Citrus Sinensis ID: 023070
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | 2.2.26 [Sep-21-2011] | |||||||
| Q6P1R4 | 473 | tRNA-dihydrouridine(16/17 | yes | no | 0.773 | 0.469 | 0.474 | 9e-61 | |
| Q8C2P3 | 475 | tRNA-dihydrouridine(16/17 | yes | no | 0.773 | 0.467 | 0.466 | 2e-60 | |
| Q8K582 | 438 | tRNA-dihydrouridine(16/17 | yes | no | 0.773 | 0.506 | 0.470 | 2e-60 | |
| Q9HGN6 | 399 | tRNA-dihydrouridine(16/17 | yes | no | 0.797 | 0.573 | 0.416 | 3e-49 | |
| P53759 | 423 | tRNA-dihydrouridine(16/17 | yes | no | 0.822 | 0.557 | 0.400 | 3e-46 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | no | 0.592 | 0.536 | 0.409 | 2e-31 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | no | 0.592 | 0.524 | 0.409 | 3e-30 | |
| O74553 | 326 | tRNA-dihydrouridine(20a/2 | no | no | 0.613 | 0.539 | 0.383 | 2e-27 | |
| Q09504 | 284 | Uncharacterized tRNA-dihy | no | no | 0.804 | 0.813 | 0.311 | 4e-27 | |
| Q06063 | 367 | tRNA-dihydrouridine(20a/2 | no | no | 0.616 | 0.482 | 0.358 | 2e-24 |
| >sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 233 bits (595), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 156/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PE+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 126 WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
W I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPG 238
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 239 VREDL 243
+R L
Sbjct: 303 IRSKL 307
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 16/252 (6%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +L
Sbjct: 86 DRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNL 145
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 146 INTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWE 205
Query: 128 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F +T
Sbjct: 206 TIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK-- 263
Query: 186 IVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVRE 241
+K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 264 -------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRS 316
Query: 242 DLNAQN-RLTFE 252
L N + T+E
Sbjct: 317 TLATMNAKATWE 328
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U16 and U17 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +E+
Sbjct: 141 VKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
+++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +
Sbjct: 81 DCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V ++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 141 VRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D L +QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V L
Sbjct: 73 DASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKL 132
Query: 68 VE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
V K L + KIR+ +L T +++E +G ++ VHGRTR +D F +
Sbjct: 133 VRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVN 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
+AI+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 191 LDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
| >sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 26/257 (10%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF +DP +L AA V VD+N GCP+ R +G+ L+ L+ +
Sbjct: 48 DSPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADM 107
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V + + P VS KIR+ +++ T+ + E AG + L VHGRT ++
Sbjct: 108 VRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---I 164
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 184
D A++ VK+++ +P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 165 DIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP 224
Query: 185 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLN 244
+D + +++L +Y + W + H+ +L F Q R N
Sbjct: 225 ----------------SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFN 266
Query: 245 AQN-RLTFE-FLYNLVD 259
N RL + FL NL+D
Sbjct: 267 ELNGRLAIDHFLNNLLD 283
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 7/184 (3%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
ED PL VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S
Sbjct: 92 EDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCS 151
Query: 67 LVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
+V K + + KIR+ L +T++ + L DAG + +HGRTR + + A
Sbjct: 152 MVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--A 209
Query: 125 DWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
+ +AIK + + +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+
Sbjct: 210 NLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYT 269
Query: 182 TAEW 185
T W
Sbjct: 270 TCPW 273
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20a and U20b in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| TAIR|locus:2155528 | 423 | AT5G67220 [Arabidopsis thalian | 0.930 | 0.631 | 0.847 | 2.4e-122 | |
| ZFIN|ZDB-GENE-030131-1435 | 511 | dus1l "dihydrouridine synthase | 0.783 | 0.440 | 0.481 | 1.7e-57 | |
| UNIPROTKB|J3QLE4 | 309 | DUS1L "tRNA-dihydrouridine(16/ | 0.773 | 0.718 | 0.474 | 1.6e-56 | |
| UNIPROTKB|Q6P1R4 | 473 | DUS1L "tRNA-dihydrouridine(16/ | 0.773 | 0.469 | 0.474 | 1.6e-56 | |
| RGD|708389 | 438 | Pp3111 "PP3111 protein" [Rattu | 0.773 | 0.506 | 0.474 | 2.5e-56 | |
| UNIPROTKB|E2R9L8 | 475 | DUS1L "Uncharacterized protein | 0.773 | 0.467 | 0.470 | 3.3e-56 | |
| UNIPROTKB|J9NYR0 | 584 | DUS1L "Uncharacterized protein | 0.773 | 0.380 | 0.470 | 3.3e-56 | |
| MGI|MGI:1915980 | 475 | Dus1l "dihydrouridine synthase | 0.773 | 0.467 | 0.466 | 5.3e-56 | |
| UNIPROTKB|E1BWI8 | 486 | DUS1L "Uncharacterized protein | 0.773 | 0.456 | 0.462 | 2.3e-55 | |
| UNIPROTKB|E1C6D2 | 478 | DUS1L "Uncharacterized protein | 0.773 | 0.464 | 0.462 | 2.3e-55 |
| TAIR|locus:2155528 AT5G67220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 227/268 (84%), Positives = 244/268 (91%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
EDRPLFVQFCANDP+ LL AA+RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS
Sbjct: 141 EDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 200
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
LVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW
Sbjct: 201 LVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 260
Query: 127 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
+AIK VKNA+RIPVLANGNVR +EDV C++ETG EGVLSAE+LLENPA FAGFRTAEW
Sbjct: 261 SAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWA 320
Query: 187 VGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 245
+EE DG LDQ DL+VEYLKLCEK+PVPWRMIRSHVHK+LGEWFRI P VRE LNA
Sbjct: 321 KDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLNA 380
Query: 246 QNRLTFEFLYNLVDRLRELGVRIPLYKK 273
QN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 381 QNILTFEFLYGLVDQLRELGGRVPLYKK 408
|
|
| ZFIN|ZDB-GENE-030131-1435 dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 117/243 (48%), Positives = 155/243 (63%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
EDRPL QFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YG FL D L++
Sbjct: 104 EDRPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEK 163
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
+++ L+VP++CKIRVFP ++ T+KYAKMLE AGC LL VHGRT+D+K A W
Sbjct: 164 MIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIASW 223
Query: 127 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
IKAV+ A+ IPV ANGN++H+ DV C+EETG +GV+SAE L NPALF G W
Sbjct: 224 KHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFEGRSPPVW- 282
Query: 187 VGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIRSHVHKLLGEWFRIQPGVREDL-N 244
++ EYL + EK+ P +R+H+ KL +I +REDL
Sbjct: 283 ---------------EMAEEYLDIVEKHSPCSLSFVRAHIFKLWHHTLQIHQDLREDLAK 327
Query: 245 AQN 247
A+N
Sbjct: 328 AKN 330
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| UNIPROTKB|J3QLE4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 113/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| UNIPROTKB|Q6P1R4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 113/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
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| RGD|708389 Pp3111 "PP3111 protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 113/238 (47%), Positives = 156/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+ AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------------ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
|
|
| UNIPROTKB|E2R9L8 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 112/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| UNIPROTKB|J9NYR0 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 112/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
|
| MGI|MGI:1915980 Dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 111/238 (46%), Positives = 156/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
|
|
| UNIPROTKB|E1BWI8 DUS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 110/238 (46%), Positives = 154/238 (64%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 191 WEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
|
|
| UNIPROTKB|E1C6D2 DUS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 110/238 (46%), Positives = 154/238 (64%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 191 WEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019548001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (413 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032354001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (252 aa) | • | • | • | 0.810 | |||||
 | GSVIVG00018638001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa) | • | 0.619 | |||||||
 | GSVIVG00038090001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa) | • | 0.607 | |||||||
 | GSVIVG00034559001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa) | • | 0.597 | |||||||
 | GSVIVG00021478001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (316 aa) | • | • | 0.577 | ||||||
 | GSVIVG00000661001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa) | • | • | 0.570 | ||||||
 | GSVIVG00026600001 | SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa) | • | 0.555 | |||||||
 | GSVIVG00005498001 | SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa) | • | 0.533 | |||||||
 | GSVIVG00028735001 | SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa) | • | 0.528 | |||||||
 | GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | 0.525 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 287 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 6e-77 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 2e-57 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 6e-55 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 2e-36 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 3e-21 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 8e-21 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 4e-15 | |
| cd02803 | 327 | cd02803, OYE_like_FMN_family, Old yellow enzyme (O | 1e-10 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 2e-10 | |
| cd02911 | 233 | cd02911, arch_FMN, Archeal FMN-binding domain | 4e-07 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 4e-06 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 2e-05 | |
| cd04732 | 234 | cd04732, HisA, HisA | 8e-05 | |
| COG0107 | 256 | COG0107, HisF, Imidazoleglycerol-phosphate synthas | 8e-05 | |
| COG0106 | 241 | COG0106, HisA, Phosphoribosylformimino-5-aminoimid | 9e-05 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 4e-04 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas | 8e-04 | |
| cd02932 | 336 | cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) Yqj | 0.002 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 6e-77
Identities = 75/183 (40%), Positives = 109/183 (59%), Gaps = 4/183 (2%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPL 63
PE+RPL VQ +DPE L AA+ VE D +D+N+GCP +G GA L+ + L
Sbjct: 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL 110
Query: 64 VKSLVEKLALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 122
V +V + + +PV+ KIR+ + ++ T++ AK LEDAG S L VHGRTR++
Sbjct: 111 VAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ--RYSG 168
Query: 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182
ADW+ I +K A+ IPV+ANG++ +ED +CLE+TG +GV+ L NP LF +
Sbjct: 169 PADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228
Query: 183 AEW 185
Sbjct: 229 LLE 231
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 2e-57
Identities = 94/272 (34%), Positives = 132/272 (48%), Gaps = 27/272 (9%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPL 63
E PL VQ +DP +L AA+ V D +DIN+GCP + RG GA L+ + L
Sbjct: 50 LEEPTPLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDL 109
Query: 64 VKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
V +V+ + +++PV+ KIR+ + ++ ++ A+ +EDAG L VHGRTR +
Sbjct: 110 VAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTR--AQNYE 167
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
ADW+AIK VK A+ IPV+ANG++ ED Q+CL TG +GV+ L NP LFA
Sbjct: 168 GPADWDAIKQVKQAVSIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQH 227
Query: 182 TAEWIVGSEEISKDGNLDQADLLVEYL-KLCEKYP---------VPWRMIRSHVHKLLGE 231
T + G D L E + E R R H+ L +
Sbjct: 228 TVKT----------GEFDPRPPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYL-K 276
Query: 232 WFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 263
F +R +LN T E L NL LR
Sbjct: 277 GFPGAAELRRELNDVFDPT-EALINLDAALRA 307
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 6e-55
Identities = 88/254 (34%), Positives = 132/254 (51%), Gaps = 19/254 (7%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLP 62
E+RP+ VQ +DPE+L AA+ E +D+N GCP +G GA L+ N
Sbjct: 63 LEEERPVAVQLGGSDPELLAEAAKIAE-ELGADIIDLNCGCPSPKVVKGGAGAALLKNPE 121
Query: 63 LVKSLVEKL-ALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDG 119
L+ +V+ + ++PV+ KIR+ + D ++ A++LEDAG L VHGRTR G
Sbjct: 122 LLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR--AQG 179
Query: 120 KKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
ADW+ IK +K A+ IPV+ANG+++ +ED ++ LE TG +GV+ L NP LF
Sbjct: 180 YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFR 239
Query: 179 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQ 236
E + E+ + D+L E+L+L +Y R +R H+ L
Sbjct: 240 QIDYLE----TGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGL---- 291
Query: 237 PGVREDLNAQNRLT 250
PG RE A N+
Sbjct: 292 PGARELRRALNKAE 305
|
Length = 323 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 2e-36
Identities = 80/267 (29%), Positives = 140/267 (52%), Gaps = 23/267 (8%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCP-QRIARRGNYGAFLMDNLPL 63
++ P+ VQ +DP+ + AA+ E D +DIN+GCP +I ++G G+ L+ + L
Sbjct: 60 EDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDL 118
Query: 64 VKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+ +V+ + +++PV+ KIR+ + ++ A++ EDAG + +HGRTR + G
Sbjct: 119 IGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GYS 176
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
A+W+ I VK A+RIPV+ NG++ ED + LE TGC+GV+ L NP LF +
Sbjct: 177 GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFR--Q 234
Query: 182 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV-HKLLGEWFRIQP 237
+++ + ++ D ++ +L+L Y R+ R H+ L G P
Sbjct: 235 IEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGF-----P 289
Query: 238 GV---REDLNAQNRLTFEFLYNLVDRL 261
G R+ LN + +F+ + L+D
Sbjct: 290 GNAALRQTLNHAS--SFQEVKQLLDDF 314
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-21
Identities = 56/169 (33%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ LVKS++ ++
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ ++ A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 8e-21
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 11/178 (6%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P + +Q P+ L NAAR VE VD+N GCP + GA L+ + L+
Sbjct: 60 PSGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119
Query: 65 ----KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119
K++ E A+ ++PV+ K+R+ + + + + A ++ AG + L VHGRT++ DG
Sbjct: 120 YQGAKAMRE--AVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--DG 175
Query: 120 -KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+ +W AI ++ L IPV+ANG + + Q+C+ TGC+ V+ L P L
Sbjct: 176 YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNL 233
|
Length = 312 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-15
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 36/199 (18%)
Query: 3 NLPPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNL 61
PE+ P+ +Q +DP L A+ E D +++N+GCP + GN+GA LM N
Sbjct: 49 KFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNA 108
Query: 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDT----IKYAKMLEDAGCSLLAVHGRTRDEK 117
LV V+ + +N+PV+ K R+ + D+ + +++ GC VH R
Sbjct: 109 DLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKA--- 165
Query: 118 DGKKFRADWNAIKAVKNALRIPVL------------------ANGNVRHMEDVQKCLEET 159
W + + K IP L NG +++ E +++ L
Sbjct: 166 --------WLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHV 217
Query: 160 GCEGVLSAESLLENPALFA 178
+GV+ ENP L A
Sbjct: 218 --DGVMVGREAYENPYLLA 234
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 76 NVPVSCKI---RVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRAD 125
+ PV ++ P L++ I+ AK LE+AG L V G + +
Sbjct: 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEG 267
Query: 126 WNA--IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+ + +K A++IPV+A G +R E ++ L E + V +LL +P L
Sbjct: 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDL 320
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 2e-10
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PE+ P+ +Q +DP L AA+ E + D +++N+GCP + G +GA LM LV
Sbjct: 62 PEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELV 121
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE------DAGCSLLAVHGR 112
V+ + +++PV+ K R+ + QD+ Y + + +AGC VH R
Sbjct: 122 ADCVKAMKDAVSIPVTVKHRIGIDDQDS--YEFLCDFVDTVAEAGCDTFIVHAR 173
|
Length = 333 |
| >gnl|CDD|239237 cd02911, arch_FMN, Archeal FMN-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 76
++ E LLNAA V ++IN C Q G L+ + + ++ L
Sbjct: 81 SSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK-ETG 139
Query: 77 VPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135
VPVS KIR + D + A+++E AG +H D + AD I+ +
Sbjct: 140 VPVSVKIRA--GVDVDDEELARLIEKAGA--DIIHVDAMDPGNH----ADLKKIRDIST- 190
Query: 136 LRIPVLANGNVRHMEDVQKCLE 157
+ ++ N +V +E ++
Sbjct: 191 -ELFIIGNNSVTTIESAKEMFS 211
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. Length = 233 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 8 DRPLFVQFCANDPEILLNAARRVE---PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PL + E A ++E PY D ++NL CP G + + L
Sbjct: 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG----GGIAIGQDPELS 145
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL----AVHGRTRDEKDGK 120
+V+ + +VPV K+ PN+ D + AK E+AG L + G D K GK
Sbjct: 146 ADVVKAVKDKTDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGK 203
Query: 121 KFRADWN------AIKAVKNALR----------IPVLANGNVRHMEDV 152
A+ AIK + ALR IP++ G + ED
Sbjct: 204 PILANKTGGLSGPAIKPI--ALRMVYDVYKMVDIPIIGVGGITSFEDA 249
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 91 DTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 147
D +++AK LE+ G L + +DG D + + A+ IPV+A+G V
Sbjct: 149 DAVEWAKKLEELGAGEILLTDID------RDGTLSGPDLELTRELAEAVNIPVIASGGVG 202
Query: 148 HMEDVQKCLEETGCEGVLSAESLLEN 173
+ED+++ L G +GV++ +L E
Sbjct: 203 SLEDLKE-LFSEGVDGVIAGSALHEG 227
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|240083 cd04732, HisA, HisA | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-05
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152
+ AK E+ G + T +DG ++ K + A IPV+A+G V ++D+
Sbjct: 149 EELAKRFEELGVKAIIY---TDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDI 205
Query: 153 QKCLEETGCEGVLSAESLLEN 173
+ L+E G GV+ ++L E
Sbjct: 206 KA-LKELGVAGVIVGKALYEG 225
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234 |
| >gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 8e-05
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 91 DTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 148
D +++AK +E+ AG LL T ++DG K D +AV+ A+ IPV+A+G
Sbjct: 156 DAVEWAKEVEELGAGEILL-----TSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGK 210
Query: 149 MEDVQKCLEETGCEGVLSA 167
E + E + L+A
Sbjct: 211 PEHFVEAFTEGKADAALAA 229
|
Length = 256 |
| >gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 96 AKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 154
AK LE+ G + + D +DG + + +K + A+ IPV+A+G V ++D++
Sbjct: 153 AKRLEEVGLAHILYT----DISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKA 208
Query: 155 CLEETGCEGVLSAESLLEN 173
E +G EGV+ +L E
Sbjct: 209 LKELSGVEGVIVGRALYEG 227
|
Length = 241 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 91 DTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 148
D +++AK +E+ G LL T ++DG K D I+AV +A+ IPV+A+G
Sbjct: 150 DAVEWAKEVEELGAGEILL-----TSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGK 204
Query: 149 MEDVQKCLEETGCEGVLSA 167
E + EE G + L+A
Sbjct: 205 PEHFVEAFEEGGADAALAA 223
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
| >gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 51/194 (26%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYC-DYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
P+ + E + A ++ D +++N+ CP G + V
Sbjct: 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNV----KGGGMAFGTDPEAVAE 144
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD- 125
+V+ + +VPV K+ PN+ D ++ A+ E+AG AD
Sbjct: 145 IVKAVKKATDVPVIVKLT--PNVTDIVEIARAAEEAG--------------------ADG 182
Query: 126 WNAIKAVKNALRI------PVLANGN------------VRHMEDVQKCLEET--GCEGVL 165
I +K + I P+L N +R + V K +E G G+
Sbjct: 183 LTLINTLK-GMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241
Query: 166 SAESLLENPALFAG 179
S E LE L AG
Sbjct: 242 SGEDALE--FLMAG 253
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296 |
| >gnl|CDD|239242 cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 89 LQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143
L+D+++ AK L++ G L+ V + G ++ + A + ++ IPV+A
Sbjct: 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPV-GPGYQVPF-A-ERIRQEAGIPVIAV 296
Query: 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
G + E + LE + V LL NP
Sbjct: 297 GLITDPEQAEAILESGRADLVALGRELLRNP 327
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. Length = 336 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 100.0 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.98 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.97 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 99.97 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.96 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.96 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.96 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.96 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.96 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.96 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.95 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.95 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.95 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.95 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.95 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.94 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.94 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.94 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.94 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.94 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.93 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.93 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.93 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.92 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.91 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.91 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.88 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.88 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.87 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.85 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.85 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.85 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.85 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.82 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.82 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.81 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.76 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.71 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.68 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.68 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.66 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.65 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.65 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.64 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.64 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.62 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.61 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.59 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.58 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.56 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.56 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 99.54 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.53 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.46 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.4 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.39 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.37 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.36 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.34 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 99.33 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 99.3 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 99.29 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.29 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.28 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.28 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.27 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.26 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.24 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 99.24 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.23 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 99.21 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.16 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.15 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.14 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 99.14 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.12 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.12 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 99.11 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.11 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.11 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 99.1 | |
| PLN02535 | 364 | glycolate oxidase | 99.09 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.08 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.05 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.03 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 99.03 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 99.01 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.94 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.93 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.92 | |
| PLN02979 | 366 | glycolate oxidase | 98.92 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.92 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.91 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.91 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.91 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.91 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.91 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.91 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.9 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.88 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.85 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 98.85 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.85 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.82 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.82 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 98.81 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.75 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.74 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.74 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.74 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.73 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.71 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.71 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 98.7 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.69 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.69 | |
| PLN02591 | 250 | tryptophan synthase | 98.68 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.68 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.67 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.67 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.66 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.66 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.66 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 98.65 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.65 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.63 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.61 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.6 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 98.59 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.59 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.59 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.58 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.57 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.57 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.56 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.56 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.55 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.55 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.55 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 98.54 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.53 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.53 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.52 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.5 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.5 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 98.48 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.48 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.46 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.46 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 98.45 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.44 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.44 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.44 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.41 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.4 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 98.39 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 98.39 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.39 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.39 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.38 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.35 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.33 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.32 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.3 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.27 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.24 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 98.22 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 98.22 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.22 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 98.21 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.21 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.2 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.19 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.19 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.17 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.16 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 98.16 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 98.14 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 98.14 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.13 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 98.13 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.11 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.09 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.07 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 98.04 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 98.03 | |
| PRK08005 | 210 | epimerase; Validated | 98.02 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.01 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 97.99 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.98 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.98 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.98 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 97.97 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.97 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.94 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.92 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.91 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 97.88 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.87 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.84 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.81 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 97.79 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.78 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.77 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 97.76 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.75 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.73 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.73 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.72 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 97.71 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.68 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.68 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.67 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 97.67 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 97.67 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.67 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.67 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 97.64 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 97.63 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 97.61 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.6 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.59 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 97.58 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.57 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 97.57 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 97.56 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 97.55 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 97.52 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 97.5 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.49 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 97.47 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 97.47 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 97.46 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.46 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 97.46 | |
| PRK06852 | 304 | aldolase; Validated | 97.4 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 97.4 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 97.38 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.38 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.36 | |
| PRK14057 | 254 | epimerase; Provisional | 97.36 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.32 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.32 | |
| PLN02535 | 364 | glycolate oxidase | 97.31 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 97.3 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.29 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 97.28 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 97.27 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 97.26 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 97.25 | |
| PLN02979 | 366 | glycolate oxidase | 97.25 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 97.22 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.18 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.17 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 97.17 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 97.17 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 97.15 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.15 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 97.14 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.13 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 97.11 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 97.11 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.1 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.09 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.09 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.08 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 97.06 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 97.06 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 97.06 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 97.06 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 97.05 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.05 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 97.04 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.03 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 97.0 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 97.0 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 96.97 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 96.95 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 96.95 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.95 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.94 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.94 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 96.93 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 96.91 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.91 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 96.9 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 96.9 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.9 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.89 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 96.89 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 96.88 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.86 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 96.86 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 96.86 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 96.84 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 96.84 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 96.83 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.82 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.81 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.78 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.77 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.77 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.77 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.75 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 96.74 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.73 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 96.72 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.71 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 96.7 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.69 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.68 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 96.68 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 96.68 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 96.65 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 96.65 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.65 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.64 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.63 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 96.63 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.61 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 96.61 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 96.53 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 96.53 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.53 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 96.53 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 96.52 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.51 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.49 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.49 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 96.49 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.49 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 96.46 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.45 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 96.43 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.42 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.42 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 96.41 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 96.4 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.4 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.34 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 96.33 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.27 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.25 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 96.22 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 96.22 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.15 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 96.14 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 96.14 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 96.11 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 96.06 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 96.06 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 96.06 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 96.05 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.04 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 96.04 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.03 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 96.02 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 96.0 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 95.98 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 95.93 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.9 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.9 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 95.9 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.88 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 95.88 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 95.88 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.86 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 95.86 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 95.84 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 95.83 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 95.81 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 95.8 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 95.77 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 95.76 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.73 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.72 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 95.71 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 95.71 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.68 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 95.66 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 95.65 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 95.63 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 95.61 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.56 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 95.56 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.54 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 95.53 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 95.5 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 95.48 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 95.48 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 95.45 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 95.45 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 95.42 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.41 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 95.41 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.4 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.4 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 95.4 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 95.38 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 95.38 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.33 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 95.32 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 95.29 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.28 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 95.27 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.25 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.23 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.23 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.23 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.21 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 95.18 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 95.17 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 95.17 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 95.15 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.15 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 95.1 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 95.07 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 95.06 | |
| COG1891 | 235 | Uncharacterized protein conserved in archaea [Func | 94.99 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 94.96 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 94.94 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 94.94 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.87 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 94.83 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 94.81 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 94.73 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 94.73 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 94.71 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.7 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 94.68 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 94.66 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.64 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.63 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 94.62 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 94.6 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 94.59 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 94.57 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 94.55 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.45 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 94.45 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.45 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.44 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 94.41 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 94.4 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.35 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 94.35 | |
| PF00793 | 270 | DAHP_synth_1: DAHP synthetase I family; InterPro: | 94.34 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.23 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 94.23 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.17 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.16 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 94.13 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 94.12 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 94.03 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.03 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.0 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 93.94 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.91 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 93.89 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 93.89 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 93.84 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 93.75 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 93.71 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 93.7 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.68 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 93.66 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 93.61 | |
| cd00740 | 252 | MeTr MeTr subgroup of pterin binding enzymes. This | 93.6 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 93.59 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 93.58 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 93.56 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.53 | |
| PRK15452 | 443 | putative protease; Provisional | 93.43 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 93.25 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 93.24 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 93.21 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 93.19 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 93.18 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 93.06 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 93.02 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 93.02 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 92.98 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 92.89 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 92.85 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 92.83 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 92.79 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 92.74 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 92.7 |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=399.83 Aligned_cols=257 Identities=49% Similarity=0.752 Sum_probs=230.3
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
+.++++|+|+|||++||||+.+.+||++++..+|+||||||||++.+++++||++|+.+|+++.++|++++..++.||++
T Consensus 67 ~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~ 146 (358)
T KOG2335|consen 67 LSTSPEDRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSV 146 (358)
T ss_pred cccCCCCCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcC
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|||++.+.+++++++++++++|++.++|||||+.++....+++||+.|+.+++.+. +||++||+|.+++|+.++++.||
T Consensus 147 KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 147 KIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998876677999999999999987 99999999999999999999999
Q ss_pred ccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhhhcCChH
Q 023070 161 CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP--WRMIRSHVHKLLGEWFRIQPG 238 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~ 238 (287)
|||||+|||+|.|||+|.... + .....+++.+|++++.+++.. +..+|.|+++|++.++..++.
T Consensus 227 ~dGVM~arglL~NPa~F~~~~---~-----------~~~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~~~~~ 292 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPALFLTAG---Y-----------GPTPWGCVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLSIHQD 292 (358)
T ss_pred CceEEecchhhcCchhhccCC---C-----------CCCHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999995411 1 112367899999999988744 999999999999999998888
Q ss_pred HHHHHHhcc-hhcHHHHHH-HHHHHHHhCCCCCCCC
Q 023070 239 VREDLNAQN-RLTFEFLYN-LVDRLRELGVRIPLYK 272 (287)
Q Consensus 239 ~r~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 272 (287)
+|..++..+ ..++.++.+ .+..+++.+.+.|...
T Consensus 293 ~r~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~ 328 (358)
T KOG2335|consen 293 LRRDLAALNSCESVIDFLEELVLMVRKRVEDGFGRG 328 (358)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHhhhccccccC
Confidence 999998775 234555555 6667777777665543
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=398.10 Aligned_cols=250 Identities=34% Similarity=0.513 Sum_probs=223.6
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEE
Q 023070 5 PPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCK 82 (287)
Q Consensus 5 ~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vK 82 (287)
.+.+.|+++||+|++|+.+++||++++. |+|+||||||||++++.++++|++||++|+++.++|++++++++ +|||||
T Consensus 63 ~~~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVK 142 (323)
T COG0042 63 LEEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVK 142 (323)
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEE
Confidence 3569999999999999999999997754 89999999999999999999999999999999999999999994 999999
Q ss_pred ecCCCChhh--HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhc
Q 023070 83 IRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 83 iR~g~~~~~--~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+|+||+..+ ..++++.++++|++.|+|||||+.+.+. +++||+.|+++++.++ +|||+||||.|++|+.++++.+
T Consensus 143 iRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~--~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 143 IRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYL--GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred EecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCC--CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 999998776 7899999999999999999999997654 4799999999999998 9999999999999999999999
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhhhcCCh
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQP 237 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~ 237 (287)
||||||||||++.|||+|+++ +++.+|+..+ ++..+..+++.+|++...++. ..+..+|+|+.||+.. +++..
T Consensus 221 g~DgVMigRga~~nP~l~~~i---~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~~-~~~a~ 295 (323)
T COG0042 221 GADGVMIGRGALGNPWLFRQI---DYLETGELLP-PTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKG-LPGAR 295 (323)
T ss_pred CCCEEEEcHHHccCCcHHHHH---HHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CccHH
Confidence 999999999999999999988 5666676654 667788999999998876655 5688999999998887 57778
Q ss_pred HHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 238 GVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 238 ~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
.+|+.+++.. +.+++..+++.+..
T Consensus 296 ~~r~~~~~~~--~~~~~~~~l~~~~~ 319 (323)
T COG0042 296 ELRRALNKAE--DGAEVRRALEAVFE 319 (323)
T ss_pred HHHHHHhccC--cHHHHHHHHHHHHh
Confidence 8899888876 77777777776544
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=390.58 Aligned_cols=250 Identities=35% Similarity=0.549 Sum_probs=191.0
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+.+.++|+++||+|+||+.+++||+++.. |+|+||||||||++.+.++++|++||++|+.+.++++++++++++|||
T Consensus 47 ~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvs 126 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVS 126 (309)
T ss_dssp S-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEE
T ss_pred ccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceE
Confidence 3456778999999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 81 CKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 81 vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
||+|+|++ .+++.++++.++++|+++|+||+||+.+.+. +++||+.++++++.+++|||+||||+|++|+.++++.
T Consensus 127 vKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~--~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~ 204 (309)
T PF01207_consen 127 VKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYK--GPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQ 204 (309)
T ss_dssp EEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCT--S---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCC
T ss_pred EecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCC--cccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHh
Confidence 99999987 6789999999999999999999999987654 4899999999999999999999999999999999999
Q ss_pred cCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CC--CchHHHHHHHHHHHHhhhcC
Q 023070 159 TGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YP--VPWRMIRSHVHKLLGEWFRI 235 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~r~~~~~~~~~~~~~ 235 (287)
+||||||||||++.|||+|++.....+ +...+.++..+..+++.+|+++..+ ++ ..+..+|+|+.||+.. +++
T Consensus 205 tg~dgvMigRgal~nP~lf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~-~~~ 280 (309)
T PF01207_consen 205 TGADGVMIGRGALGNPWLFREIDQIKE---GEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKG-FPG 280 (309)
T ss_dssp H-SSEEEESHHHCC-CCHHCHHHCHHH---HTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTT-STT
T ss_pred cCCcEEEEchhhhhcCHHhhhhhhhcc---CCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcc-CCc
Confidence 999999999999999999995322222 2222223356778899999986544 42 3467888888777665 566
Q ss_pred ChHHHHHHHhcchhcHHHHHHHHH
Q 023070 236 QPGVREDLNAQNRLTFEFLYNLVD 259 (287)
Q Consensus 236 ~~~~r~~l~~~~~~~~~~~~~~~~ 259 (287)
...+|+.+++.. +.+++.+.++
T Consensus 281 ~~~~r~~l~~~~--~~~e~~~~l~ 302 (309)
T PF01207_consen 281 ARKFRRELNKCK--TLEEFLELLE 302 (309)
T ss_dssp HHHHHHHHCCH---SHHHHHHHH-
T ss_pred HHHHHHHHHhhC--CHHHHhhhhc
Confidence 667899998876 7788888777
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-52 Score=378.13 Aligned_cols=245 Identities=24% Similarity=0.374 Sum_probs=214.0
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEE
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 80 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~ 80 (287)
.++.++|+++||+|++|+.|++||+.++ .|+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+ ++||+
T Consensus 58 ~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVs 137 (312)
T PRK10550 58 RTPSGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVT 137 (312)
T ss_pred CCCCCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceE
Confidence 4677899999999999999999998665 59999999999999988888899999999999999999999987 49999
Q ss_pred EEecCCCCh-hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 81 CKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 81 vKiR~g~~~-~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
||+|+|++. +++.++++.++++|+++|+||+||..+. +.++ ++|+.++++++.+++|||+||||.|++|+.++++.
T Consensus 138 vKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 138 VKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred EEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 999999854 4588999999999999999999998764 4455 49999999999999999999999999999999988
Q ss_pred cCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhhhcC
Q 023070 159 TGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV---PWRMIRSHVHKLLGEWFRI 235 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~r~~~~~~~~~~~~~ 235 (287)
+|||+||||||+++|||||++++. |+ +.++..++++++.+|+++..++.. .+..||+|+.||+++ +++
T Consensus 216 ~g~DgVmiGRg~l~nP~lf~~~~~------g~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~ 286 (312)
T PRK10550 216 TGCDAVMIGRGALNIPNLSRVVKY------NE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKE-YDE 286 (312)
T ss_pred cCCCEEEEcHHhHhCcHHHHHhhc------CC--CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhc-CCc
Confidence 999999999999999999998853 32 234566788889999987554432 266799999998886 678
Q ss_pred ChHHHHHHHhcchhcHHHHHHHHHHH
Q 023070 236 QPGVREDLNAQNRLTFEFLYNLVDRL 261 (287)
Q Consensus 236 ~~~~r~~l~~~~~~~~~~~~~~~~~~ 261 (287)
..++|+.+++.. +.+++.++++++
T Consensus 287 ~~~~r~~i~~~~--~~~e~~~~~~~~ 310 (312)
T PRK10550 287 ATELFQEIRALN--NSPDIARAIQAI 310 (312)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHhh
Confidence 889999999987 888888888754
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-52 Score=380.16 Aligned_cols=254 Identities=27% Similarity=0.373 Sum_probs=223.9
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.+.+++.|+++||+|++|++|++||+.+ +.|+|+||||||||++.+.+.++|++|+++|+++.++++++++.+++||++
T Consensus 59 ~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~v 138 (321)
T PRK10415 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTL 138 (321)
T ss_pred ccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEE
Confidence 3456678999999999999999999975 468999999999999988888899999999999999999999999999999
Q ss_pred EecCCCChh--hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 82 KIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 82 KiR~g~~~~--~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|+|.||+.+ ++.++++.++++|+++|+||+|++.+.+ .++++|+.++++++.+++|||+||||.|++|+.++++.+
T Consensus 139 KiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~--~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~ 216 (321)
T PRK10415 139 KIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT 216 (321)
T ss_pred EEEccccCCcchHHHHHHHHHHhCCCEEEEecCcccccc--CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhcc
Confidence 999998754 6889999999999999999999987653 457899999999999999999999999999999999889
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhhcCC
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQ 236 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~r~~~~~~~~~~~~~~ 236 (287)
|||+||+|||++.|||+|++++ .++..|+..++++..++.+++.+|++.+.+ |+. ++..+|+|+.||+++ +++.
T Consensus 217 gadgVmiGR~~l~nP~if~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~ 293 (321)
T PRK10415 217 GADALMIGRAAQGRPWIFREIQ--HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPN 293 (321)
T ss_pred CCCEEEEChHhhcCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhc-CCch
Confidence 9999999999999999999885 455556665556667888999999987654 443 378899999998886 6888
Q ss_pred hHHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 237 PGVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 237 ~~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
..+|+.+++.+ +.+++.++++++..
T Consensus 294 ~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 294 DQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 89999999987 89999999987653
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=373.59 Aligned_cols=240 Identities=22% Similarity=0.351 Sum_probs=204.7
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+++.++|+++||+|++|+.|++||+.+++ |+|+||||||||++++++++||++|+++|+++.++++++++++++||+
T Consensus 48 l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVs 127 (318)
T TIGR00742 48 LKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVT 127 (318)
T ss_pred cccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeE
Confidence 4567899999999999999999999998764 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCh----hhHHHHHHHHHHcCCCEEEEeccCC-CCcCCC-----CccccHHHHHHHHhhC-CCcEEEecCCCCH
Q 023070 81 CKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTR-DEKDGK-----KFRADWNAIKAVKNAL-RIPVLANGNVRHM 149 (287)
Q Consensus 81 vKiR~g~~~----~~~~~~a~~l~~~G~~~I~vh~rt~-~~~~~~-----~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~ 149 (287)
||+|+|++. +++.++++.++++|++.|+||+||+ .+.+.. ..+++|+.++++++.+ ++|||+||||+|+
T Consensus 128 vKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~ 207 (318)
T TIGR00742 128 VKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNS 207 (318)
T ss_pred EEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCH
Confidence 999999853 4678999999999999999999997 322211 1245899999999987 8999999999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 229 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 229 (287)
+|+.+++. |||+||||||++.|||+|.+++. ++.++ +.+.++..+..+.+++|++....+...+..+|+|+.||+
T Consensus 208 ~da~~~l~--g~dgVMigRgal~nP~if~~~~~--~l~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~ 282 (318)
T TIGR00742 208 EQIKQHLS--HVDGVMVGREAYENPYLLANVDR--EIFNE-TDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLF 282 (318)
T ss_pred HHHHHHHh--CCCEEEECHHHHhCCHHHHHHHH--HhcCC-CCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 99999995 89999999999999999999864 33333 333355566777888888765545556889999999988
Q ss_pred HhhhcCChHHHHHHHhcc
Q 023070 230 GEWFRIQPGVREDLNAQN 247 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~ 247 (287)
++ +++...+|+.+++..
T Consensus 283 ~g-~~~~~~~r~~~~~~~ 299 (318)
T TIGR00742 283 QG-KPGAKQWRRYLSENA 299 (318)
T ss_pred cc-CCCHHHHHHHHHhcc
Confidence 85 678889999998864
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=353.13 Aligned_cols=254 Identities=30% Similarity=0.519 Sum_probs=219.5
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.++++++|+++||+|++|++|++||+.++ .|+|+||||+|||+..+.+.++|+.++++|+++.++++++++.+++||+|
T Consensus 57 ~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~v 136 (319)
T TIGR00737 57 DIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTV 136 (319)
T ss_pred hcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEE
Confidence 45678999999999999999999999775 59999999999998766677777789999999999999999999999999
Q ss_pred EecCCCChh--hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 82 KIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 82 KiR~g~~~~--~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|+|.|++.. ++.++++.++++|+++|+||+|+..+. ++++++|+.++++++.+++||++||||.|++|+.++++.+
T Consensus 137 Kir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 137 KIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQG--YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred EEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccccc--CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 999987543 578999999999999999999987653 4457899999999999999999999999999999999878
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhhcCC
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQ 236 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~r~~~~~~~~~~~~~~ 236 (287)
|||+||+||+++.|||+|.+++ .++..++..++++..++++++.+|++++.+ |+. .+..+|+|+.+|+.. +++.
T Consensus 215 gad~VmigR~~l~~P~l~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~ 291 (319)
T TIGR00737 215 GCDGVMIGRGALGNPWLFRQIE--QYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKG-FPGN 291 (319)
T ss_pred CCCEEEEChhhhhCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-CCcH
Confidence 9999999999999999999885 445445444445666888999999987644 543 378899999998874 6888
Q ss_pred hHHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 237 PGVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 237 ~~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
+.+|+.++++. +++++.++++++..
T Consensus 292 ~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 292 AALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 89999999987 89999999888654
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=354.52 Aligned_cols=254 Identities=21% Similarity=0.344 Sum_probs=209.7
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+++.++|+++||+|++|+.|++||+.++. |+|+||||||||++++++++||++|+++|+++.++++++++++++||+
T Consensus 58 l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVs 137 (333)
T PRK11815 58 LAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVT 137 (333)
T ss_pred hccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceE
Confidence 4567889999999999999999999997765 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCh----hhHHHHHHHHHHcCCCEEEEeccCCC-CcCC-----CCccccHHHHHHHHhhC-CCcEEEecCCCCH
Q 023070 81 CKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHM 149 (287)
Q Consensus 81 vKiR~g~~~----~~~~~~a~~l~~~G~~~I~vh~rt~~-~~~~-----~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~ 149 (287)
+|+|++++. +++.++++.++++|+++|+||+|+.. +.+. ...+++|+.++++++.+ ++|||+||||+|+
T Consensus 138 vKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ 217 (333)
T PRK11815 138 VKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTL 217 (333)
T ss_pred EEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCH
Confidence 999998643 45789999999999999999999862 2111 11357899999999985 8999999999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 229 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 229 (287)
+|+.++++ +||+|||||+++.|||+|++++...+ |++.+.++..+..+.+.+|++....++..+..+|+|+.||+
T Consensus 218 eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~ 292 (333)
T PRK11815 218 EEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELF---GEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLF 292 (333)
T ss_pred HHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99999997 59999999999999999999864332 44333345556677777777665445556889999999988
Q ss_pred HhhhcCChHHHHHHHhcch---hcHHHHHHHHHHH
Q 023070 230 GEWFRIQPGVREDLNAQNR---LTFEFLYNLVDRL 261 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~~---~~~~~~~~~~~~~ 261 (287)
++ +++...+|+.+++... .+.+.+.+.+..+
T Consensus 293 ~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (333)
T PRK11815 293 QG-LPGARAWRRYLSENAHKPGAGIEVLEEALALV 326 (333)
T ss_pred cC-CCCHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 86 6888899999987642 3455555555443
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=323.94 Aligned_cols=258 Identities=21% Similarity=0.383 Sum_probs=212.7
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPV 79 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv 79 (287)
+.+..|.-+.|||+|+.|+.+.+||+++.+ .+|.||||||||...+-+.+.|++||++|..+.++++++....+ +|+
T Consensus 314 kRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPi 393 (614)
T KOG2333|consen 314 KRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPI 393 (614)
T ss_pred hhcCcccceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCe
Confidence 345666789999999999999999997643 58999999999999888888899999999999999999987774 699
Q ss_pred EEEecCCCChh--hHHHHHHHHH-HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 023070 80 SCKIRVFPNLQ--DTIKYAKMLE-DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 80 ~vKiR~g~~~~--~~~~~a~~l~-~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~ 154 (287)
|||||.|.... -+.+++..+. +-|+++||+|||+++|++.. .+||++|.++.+.. .+|+|+||||.|++|..+
T Consensus 394 TVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK--~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~ 471 (614)
T KOG2333|consen 394 TVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTK--SANWDYIEECADKAKSALPLIGNGDILSWEDWYE 471 (614)
T ss_pred EEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhc--ccChHHHHHHHHhcccCceeEecCccccHHHHHH
Confidence 99999986433 4556777776 89999999999999988765 79999999998875 389999999999999888
Q ss_pred HHHhcC-ccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHH-HhCCC---chHHHHHHHHHHH
Q 023070 155 CLEETG-CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKYPV---PWRMIRSHVHKLL 229 (287)
Q Consensus 155 ~l~~~g-ad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~~~r~~~~~~~ 229 (287)
.+..++ +|+||||||+|-.||+|.+|+...+. ..+..+|+++++.|.+|. +.|+. .+...|+++..+|
T Consensus 472 ~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~w-------D~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~l 544 (614)
T KOG2333|consen 472 RLNQNPNVDSVMIARGALIKPWIFTEIKEQQHW-------DISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFL 544 (614)
T ss_pred HhhcCCCcceEEeeccccccchHhhhhhhhhcC-------CccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHH
Confidence 887665 99999999999999999999875432 245678999999999995 45553 3677888876555
Q ss_pred HhhhcCChHHHHHHHhcchhcHHHHHHHHHHH-HHhCCCCCCCCCCcchhhhhhhccc
Q 023070 230 GEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL-RELGVRIPLYKKDADDAEILADDLA 286 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
.++.+..| . .+++.+ ..++.|||+|+||.++||||||.-|
T Consensus 545 SF~~RYiP--------------v---~l~e~lpqriN~RPp~y~gRdelETLm~S~ka 585 (614)
T KOG2333|consen 545 SFFHRYIP--------------V---GLLEVLPQRINDRPPLYTGRDELETLMSSQKA 585 (614)
T ss_pred HHHHhhch--------------H---HHhhcCchhhccCCccccchhHHHHHHhcccc
Confidence 54444444 1 233332 7789999999999999999999765
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=279.18 Aligned_cols=178 Identities=42% Similarity=0.699 Sum_probs=164.4
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
..++.+.|+++||+|++|++|+++|+.+.. |||+||||+|||+++.++++||++++++++++.++++++++.+++||++
T Consensus 49 ~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v 128 (231)
T cd02801 49 TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV 128 (231)
T ss_pred ccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 346788999999999999999999997755 9999999999999999999999999999999999999999998999999
Q ss_pred EecCCCChh-hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 82 KIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 82 KiR~g~~~~-~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|+|.+++.. ++.++++.+++.|+++|+||+|+..+. +.++.+|+.++++++.+++||++||||.|++|+.++++.+|
T Consensus 129 k~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~g 206 (231)
T cd02801 129 KIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTG 206 (231)
T ss_pred EEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcC
Confidence 999998776 889999999999999999999987652 23367999999999999999999999999999999999889
Q ss_pred ccEEEEehhhhhCccchhchhh
Q 023070 161 CEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~ 182 (287)
||+||+||+++.|||+|++++.
T Consensus 207 ad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 207 VDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CCEEEEcHHhHhCCHHHHhhhh
Confidence 9999999999999999998764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=265.85 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=147.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+..|+++|+.+++|+++.++++.++.++|+||||||||++.+.+.++|++|+++|+.+.++++++++ .++||+||+|++
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~ 144 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGN 144 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence 4569999999999999999999998899999999999999999999999999999999999999994 589999999999
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
++..++.++++.++++|+++|+||.+... .+.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||
T Consensus 145 ~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~Vm 218 (231)
T TIGR00736 145 CIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVS 218 (231)
T ss_pred CCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEE
Confidence 87778899999999999999999965432 12389999999999985 99999999999999999998 7999999
Q ss_pred EehhhhhC
Q 023070 166 SAESLLEN 173 (287)
Q Consensus 166 iGR~~l~n 173 (287)
+||+++.+
T Consensus 219 vgR~~l~~ 226 (231)
T TIGR00736 219 VARAILKG 226 (231)
T ss_pred EcHhhccC
Confidence 99999976
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=267.64 Aligned_cols=161 Identities=24% Similarity=0.318 Sum_probs=146.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+++||+|++|+.+.++|+.++.++|+||||||||++.+.+.++|++|+++|+.+.++++++++ .++||++|+|+++
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~ 150 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV 150 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 569999999999999999999887778999999999999998888999999999999999999997 5999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+ .++.++++.++++|++.|+++.+.. + ..+||+.+++++ +++|||+||||.|++|+.++++ +|||+||+|
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~----g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiG 220 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDP----G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVA 220 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCC----C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEc
Confidence 8 8899999999999999876654321 1 268999999987 7899999999999999999998 699999999
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
|+ .|||+|++++
T Consensus 221 R~--~~p~~~~~~~ 232 (233)
T cd02911 221 RA--SLPENIEWLV 232 (233)
T ss_pred CC--CCchHHHHhh
Confidence 99 9999998764
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=244.42 Aligned_cols=168 Identities=23% Similarity=0.319 Sum_probs=144.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
.+.|+++||+|+++++|.++|+.++. ++|+||||||||+.+ ++|+.++++|+++.++++++++.+++||++|+
T Consensus 89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi 164 (300)
T TIGR01037 89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKL 164 (300)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35699999999999999999998763 489999999999964 47899999999999999999999899999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCcccc----HHHHHHHHhhCCCcEEEecC
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRAD----WNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~~~~----~~~i~~i~~~~~ipVi~nGg 145 (287)
+. +.++..++++.++++|+|+|+||+++... ..++++++. ++.++++++.+++|||++||
T Consensus 165 ~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GG 242 (300)
T TIGR01037 165 SP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG 242 (300)
T ss_pred CC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECC
Confidence 85 44678899999999999999998653210 012233443 47888999999999999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|.|++|+.+++. +|||+||+||+++.|||+|.++.
T Consensus 243 I~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~ 277 (300)
T TIGR01037 243 ITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKII 277 (300)
T ss_pred CCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHH
Confidence 999999999998 69999999999999999998775
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=237.64 Aligned_cols=170 Identities=18% Similarity=0.276 Sum_probs=147.4
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++|++|+ ++++|.++|+.+++ |+|+||||++||+.. ...++|+.++++|+.+.++++++++.+++||+||+|.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~ 177 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC
Confidence 68999999998 99999999998765 899999999999974 3445799999999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCC-------------------CcCCCCcccc----HHHHHHHHhhC--CCcE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------------------EKDGKKFRAD----WNAIKAVKNAL--RIPV 140 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~-------------------~~~~~~~~~~----~~~i~~i~~~~--~ipV 140 (287)
. ..+..++++.++++|+++|+++.++.. ...+++|++. |+.++++++.+ ++||
T Consensus 178 ~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 178 N--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred C--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 4 457889999999999999986533211 1234555666 89999999999 8999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
|+||||.|.+|+.+++. +|||+||+||+++. +|.++.++.
T Consensus 256 ig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 256 SGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred EEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 99999999999999998 79999999999887 999998764
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=234.18 Aligned_cols=216 Identities=28% Similarity=0.493 Sum_probs=192.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
...+++|++.++|+-..++|+.+.....+||+|||||..+...+++|++|+.+|+.+..|+.++.+...+||++|||+..
T Consensus 81 ~~rlilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~ 160 (477)
T KOG2334|consen 81 NSRLILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLD 160 (477)
T ss_pred cCeEEEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCC---HHHHHHHHHhcCccE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRH---MEDVQKCLEETGCEG 163 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s---~~da~~~l~~~gad~ 163 (287)
+.++++++++++.+.|+..|+||+||++++... ++.-++++.+...+. +|||+||+..+ ..|+....+.+|+|+
T Consensus 161 s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~--~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~ 238 (477)
T KOG2334|consen 161 SKEDTLKLVKRICATGIAAITVHCRTRDERNQE--PATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADS 238 (477)
T ss_pred CcccHHHHHHHHHhcCCceEEEEeeccccCCCC--CCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccch
Confidence 999999999999999999999999999877554 677788999988886 99999999999 778888888899999
Q ss_pred EEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhcCChHHH
Q 023070 164 VLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 240 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~r 240 (287)
|||+|++..||.+|.+- ++.+..+.+++|++++.+|...+...+..+..++...+.+-|..+
T Consensus 239 vmiAR~A~~n~SiF~~e---------------G~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~ 300 (477)
T KOG2334|consen 239 VMIARAAESNPSIFREE---------------GCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGK 300 (477)
T ss_pred hhhhHhhhcCCceeeec---------------CCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhh
Confidence 99999999999999732 245678899999999998887777778888887776555545443
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=227.95 Aligned_cols=168 Identities=20% Similarity=0.315 Sum_probs=143.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+++||+|+++++|+++|+.+++ |+|+||||++||+.+. .|+.+.++++++.++++++++.+++||++|++.
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 57899999999999999999997754 8999999999999642 377888999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCccc----cHHHHHHHHhhCCCcEEEecCCC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRA----DWNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~~~----~~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
. .++..++++.++++|+|+|++++++... ....++++ .|+.++++++.+++|||++|||.
T Consensus 164 ~--~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~ 241 (296)
T cd04740 164 N--VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241 (296)
T ss_pred C--chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3 4578899999999999999986543210 01122222 46889999999999999999999
Q ss_pred CHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|++|+.++++ .|||+||+||+++.||++++++.
T Consensus 242 ~~~da~~~l~-~GAd~V~igra~l~~p~~~~~i~ 274 (296)
T cd04740 242 SGEDALEFLM-AGASAVQVGTANFVDPEAFKEII 274 (296)
T ss_pred CHHHHHHHHH-cCCCEEEEchhhhcChHHHHHHH
Confidence 9999999998 69999999999999999999775
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=226.24 Aligned_cols=169 Identities=21% Similarity=0.334 Sum_probs=143.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.|+++||+|+++++|+++|+.++. | +|+||||++||+. ..+ |..+.++++++.+++++|++.+++||++|++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~---~~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV---KHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC---CCC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 37899999999999999999997765 7 9999999999984 122 7788899999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCc----cccHHHHHHHHhhCCCcEEEecCC
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF----RADWNAIKAVKNALRIPVLANGNV 146 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~----~~~~~~i~~i~~~~~ipVi~nGgI 146 (287)
. +.++..++++.++++|+|+|++++++... ....++ +..++.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 6 44578899999999999999986543211 011112 236889999999999999999999
Q ss_pred CCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 147 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.|++|+.+++. .|||+||+||+++.||+++.++..
T Consensus 244 ~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 244 SSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHH
Confidence 99999999998 699999999999999999998753
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=225.07 Aligned_cols=169 Identities=22% Similarity=0.357 Sum_probs=146.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+++||+|++++++.++|+.+++ |+|+||||++||+.+. |..++++++.+.++++++++.+++||++|++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 47899999999999999999997755 8999999999998532 34478999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCc--------------CCCCc----cccHHHHHHHHhhC--CCcEEEecC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKF----RADWNAIKAVKNAL--RIPVLANGN 145 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~--------------~~~~~----~~~~~~i~~i~~~~--~ipVi~nGg 145 (287)
+++.++..++++.++++|+|+|++|+++.... ...++ +..+++++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 88888899999999999999999998754210 01111 12578899999988 899999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
|+|++|+.+++. .|||+||+||+++.| |++|.++.
T Consensus 252 I~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 252 IDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 999999999998 699999999999999 99999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=229.62 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=143.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----
Q 023070 21 EILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----- 85 (287)
++|++||+.+ ++|||+||||++ ||..|.|+|.||++|++|.+++.+|+++|++.++.||++|++.
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 6888999865 569999999987 9999999999999999999999999999999999999999997
Q ss_pred -CCChhhHHHHHHHHHHcCCCEEEEeccCCCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 -g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
|.+.++..++++.+++.|+|+|+||+++.... ..++ ..+|++.+++++.+++||+++|+|.|++++++++++++||
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRAD 300 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCC
Confidence 45778899999999999999999999874321 1122 2478889999999999999999999999999999988899
Q ss_pred EEEEehhhhhCccchhchhh
Q 023070 163 GVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~~ 182 (287)
+|++||++++||+|++++..
T Consensus 301 ~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 301 LIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred hHHhhHHHHhCccHHHHHHH
Confidence 99999999999999998864
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=229.38 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=139.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEec--c-------CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC---
Q 023070 21 EILLNAARRV-EPYCDYVDINL--G-------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~--g-------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~--- 87 (287)
++|++||+.+ ++|||+||||+ | ||..|.|+|+||++|++|.+++.+|+++|++.++.++.||+|+++
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~ 220 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED 220 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc
Confidence 6889999865 57999999997 4 899999999999999999999999999999999888888888753
Q ss_pred -----ChhhHHHHHHHHHHcC-CCEEEEeccCCCCc---------CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 88 -----NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEK---------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 88 -----~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~---------~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
+.++++++++.++++| +|+|+||+++.... ..++...+|+.++.+++.+++||++||+|+|++++
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~ 300 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEA 300 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHH
Confidence 4568899999999998 89999975543321 01112346888999999999999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.++++.++||+||+||+++.||||++++..
T Consensus 301 ~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 301 EQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred HHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 999998889999999999999999998865
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=230.06 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=144.9
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++||+|+ ++++|+++|+.++. |+|+||||++||++. ...++|+.++++|+.+.+|++++++.+++||+||++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~-~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGM-SERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc-cccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC
Confidence 58999999999 99999999997765 899999999999943 3345799999999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe---------------------ccCCCCcCCCCccc----cHHHHHHHHhhC---C
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDEKDGKKFRA----DWNAIKAVKNAL---R 137 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh---------------------~rt~~~~~~~~~~~----~~~~i~~i~~~~---~ 137 (287)
+..+..++++.++++|+++|++. +|+.. .+++|++ .|+.|+++++.+ +
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~--gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 178 --NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSH--GGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred --CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCc--ccccchhhhHHHHHHHHHHHhccccCC
Confidence 44467899999999999999953 23222 2344555 599999999987 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchhh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 182 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~~ 182 (287)
+|||++|||.|.+|+.+++. +|||+|||||+++. +|.++.++..
T Consensus 254 ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred CCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHH
Confidence 99999999999999999998 79999999999887 8998887754
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-28 Score=224.56 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec--
Q 023070 19 DPEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR-- 84 (287)
Q Consensus 19 ~~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR-- 84 (287)
..++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|++++.+++++|++++ ++||.+|++
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 457899999966 5699999999885 99999999999999999999999999999998 489999997
Q ss_pred ----CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC---------CccccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 85 ----VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---------KFRADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 85 ----~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~---------~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
.|++.+++.++++.+++.|+++|.||+++..+.... .....++..+++++.+++||+++|+|.++++
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~ 306 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA 306 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 478888999999999999999999999876433210 0112367888999999999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+++++++||+|++||++++||+|+++++
T Consensus 307 a~~~l~~g~aD~V~lgR~~iadP~~~~k~~ 336 (338)
T cd04733 307 MEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence 999999888999999999999999999875
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=215.47 Aligned_cols=168 Identities=15% Similarity=0.251 Sum_probs=138.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC----CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP----YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~----g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
.+.|+++||+|+ +++|.++++.++. ++|+||||++||+.. + +..+..+|+.+.++++++++.+++||+||
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~---~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP---G--KPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC---C--cccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999 9999999986653 689999999999941 1 23567799999999999999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHc--CCCEEEEeccC-----------C-----CCc-CCCCcc----ccHHHHHHHHhhC--C
Q 023070 83 IRVFPNLQDTIKYAKMLEDA--GCSLLAVHGRT-----------R-----DEK-DGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~--G~~~I~vh~rt-----------~-----~~~-~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+|.+++..+..++++.+.+. |+++|+++.++ . .+. .+.+|+ ..+..++++++.+ +
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ 243 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE 243 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence 99998877888999999888 99999964322 1 010 111221 2356678888888 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||++|||.|.+|+.+++. .|||+||+||+++. +||+|+++.
T Consensus 244 ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 287 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIE 287 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHH
Confidence 99999999999999999998 79999999999995 999999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=218.48 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=144.3
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC---
Q 023070 7 EDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--- 76 (287)
.+.|+++||+|++ .++|+++++.+..++|+||||++||+.. |...+++++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhcc
Confidence 4689999999998 7899999998877899999999999842 33347899999999999999875
Q ss_pred --CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhC--C
Q 023070 77 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 77 --~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+||++|++..++.++..++++.++++|+++|++|+++.... .+++++ ..|+.++++++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 99999999887777889999999999999999999865321 123333 3478899999988 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+||+++|||+|++|+.+++. .|||+||+||+++. +|++|.++.
T Consensus 281 ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHH
Confidence 99999999999999999998 79999999999987 599999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=219.99 Aligned_cols=162 Identities=25% Similarity=0.307 Sum_probs=140.0
Q ss_pred HHHHHHHHHH-cCCCCEEEEec---cC-------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 21 EILLNAARRV-EPYCDYVDINL---GC-------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~---gc-------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
++|++||+.+ ++|||+||||+ || |..|.|+|.||++|++|++++.+|+++|++++ ++||++|++.
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~ 229 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 6889999866 56999999996 64 88999999999999999999999999999988 5899999985
Q ss_pred ------------------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC-C----C-CccccHHHHHHHHhhCCCcEE
Q 023070 86 ------------------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-G----K-KFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 86 ------------------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~-~----~-~~~~~~~~i~~i~~~~~ipVi 141 (287)
|.+.++++++++.++++|+|+|+||+++..... . + +....++.++.+++.+++||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 345678899999999999999999988754321 0 1 111236778899999999999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++|+|++++++.+++++++||+|++||+++.||||+++++.
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 99999999999999998889999999999999999998864
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=215.90 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=139.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF--- 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g--- 86 (287)
++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|.+++.+|+++|++.++. +|++|++..
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 6888999866 4699999999888 9999999999999999999999999999998854 899999852
Q ss_pred ------CChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+.++..++++.+++.|+|+|.| ||++..+. ...+++..+.+++.+++||+++|+|+ ++++.++++++
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 25578889999999999999999 56554322 35788999999999999999999997 99999999988
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+|++||++++||||+++++.
T Consensus 307 ~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhCcCHHHHHhc
Confidence 89999999999999999998865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-27 Score=216.42 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=144.6
Q ss_pred CCCCEEEEecCC-------CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC---
Q 023070 7 EDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~-------~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--- 76 (287)
.+.|++++|+|+ ..++|++.++.+..++|+||+|++||+.. |....++++.+.+++++|++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999987 67899999998887899999999999842 23337899999999999999886
Q ss_pred --CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCcc----ccHHHHHHHHhhC--C
Q 023070 77 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 77 --~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+||+||++.+.+.++..++++.++++|+|+|++|+++... ..+.+|+ ..|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999988777789999999999999999999987432 1123333 3788999999988 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||++|||.|++|+.+++. .|||+||+||+++. +|+++.++.
T Consensus 290 ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~ 333 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIV 333 (344)
T ss_pred CCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHH
Confidence 99999999999999999998 79999999999976 599999875
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=214.98 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=139.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|+||++|++|++++.+++++|++.+ ++||++|++.
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 37888999864 5799999999875 99999999999999999999999999999998 7899999983
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc--cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF--RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~--~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|++.+++.++++.+++.|+++|.||..........+. ..+++..+++++.+++||+++|+|.|++++.++++.+
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 5678889999999999999999998543322111111 2356888999999999999999999999999999987
Q ss_pred CccEEEEehhhhhCccchhchh
Q 023070 160 GCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.||+||+||+++.||+|+.++.
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 313 RADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred CCCeehhhHHHHhCccHHHHHh
Confidence 7999999999999999998764
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=213.20 Aligned_cols=162 Identities=28% Similarity=0.348 Sum_probs=142.6
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g- 86 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|.||++++++++++.+++++|++.+ ++||++|++..
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 36888999865 569999999976 899999999999999999999999999999988 78999999863
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.+++.++++.+++.|+++|+|++++..+... .....+++.++.+++.+++||+++|||.|++++.++
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 466788999999999999999999887654321 112457788999999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchhchh
Q 023070 156 LEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
++.++||+|++||+++.||+|+.+++
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHHHh
Confidence 99879999999999999999999775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-27 Score=217.28 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=133.9
Q ss_pred HHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccC----CcEEEEecCC
Q 023070 21 EILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN----VPVSCKIRVF 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~----~pv~vKiR~g 86 (287)
++|++||+.+ ++|||+||||+ .||..|.|+|.||+++++|.+++.||+++|+++++ .++.|++|++
T Consensus 144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 6889999865 46999999995 59999999999999999999999999999999876 4555555553
Q ss_pred --------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 023070 87 --------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 87 --------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l 156 (287)
.+.++.+++++.+++.|+|+|+||+++............++.++.+++.+ ++||+++|||+|++++.+++
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l 303 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEAL 303 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 34578899999999999999999986543322111123566677777766 79999999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+. |||+|++||++++||+|+.+++.
T Consensus 304 ~~-gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 304 ET-GADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred Hc-CCChHHHhHHHHhCccHHHHHHc
Confidence 97 89999999999999999998864
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=210.72 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=137.5
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+||||++| |..|.|+|+||++|.+|.+++.+|+++|++.+ ++||.+|++.
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 5889999865 5699999999888 99999999999999999999999999999988 5899999984
Q ss_pred -------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC------------
Q 023070 86 -------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV------------ 146 (287)
Q Consensus 86 -------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI------------ 146 (287)
|.+.++..++++.+++.|+|+|+|+.+.... ..+. ..+++..+.+++.+++||+++|+|
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~ 301 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAG 301 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcC-ccchhHHHHHHHHcCCCEEEECCccccccccccccc
Confidence 2345677889999999999999887653211 1122 246777888999999999999999
Q ss_pred ------CCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 147 ------RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 147 ------~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.|+++++++++.++||+|++||+++.||||+++++.
T Consensus 302 ~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 343 (361)
T cd04747 302 DEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVRE 343 (361)
T ss_pred ccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHc
Confidence 699999999998889999999999999999998864
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=208.85 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=134.8
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--- 86 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|.+++.+|+++|++.++.++.|++|++
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 37889999865 5699999999888 9999999999999999999999999999999865555555553
Q ss_pred -------CChhhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 87 -------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 87 -------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.++++++++.+++. +|++.|+....... ...+....|+..+.+++.+++||+++|+|++++++.++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 2456778999999876 79999976532211 11122346788899999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchhchhh
Q 023070 156 LEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++++||+|++||++++||||+.+++.
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~~ 334 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIRE 334 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHHc
Confidence 998889999999999999999998875
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=206.62 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=133.7
Q ss_pred HHHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---
Q 023070 20 PEILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--- 86 (287)
.++|++||+.+ ++|||+||||. .||..|.|+|.||++|+++++++.+++++|++.++.++.+++|++
T Consensus 136 ~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D 215 (353)
T cd02930 136 IEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD 215 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc
Confidence 37889999865 57999999985 399999999999999999999999999999999865544444442
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCcc-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
++.++++++++.++++|+|+|+|+....+.. ...... ...+..+++++.+++||+++|++.+++++++++
T Consensus 216 ~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 216 LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHH
Confidence 4667889999999999999999964321110 011112 234567889999999999999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++||+||+||+++.||||+++++.
T Consensus 296 ~~g~~D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 296 ADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred HCCCCChhHhhHHHHHCccHHHHHHh
Confidence 98889999999999999999998864
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=200.78 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=137.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+++||+|+++++|.++|+.++. |+|+||||++||. .+.+.+|+.+ ++.+.++++++++.+++||+||++..
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~--~~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALP--TDPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--CCCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 6899999999999999999998764 8999999999964 2234566544 57789999999999999999999864
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
..+..++++.++++|+++|++|+|+.... ...+|+ ..+++++++++.+++|||++|||.|++|
T Consensus 174 --~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D 251 (325)
T cd04739 174 --FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED 251 (325)
T ss_pred --ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence 34788999999999999999999863221 011222 2367788898888999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+.+++. .|||+||+||+++. +|.++.++.
T Consensus 252 a~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 252 VVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred HHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 999998 79999999999988 599888664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-25 Score=222.08 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=135.8
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|+||++|+++.+++.+|+++|++.+ ++||++|++.
T Consensus 550 i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 550 RDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Confidence 36889999864 579999999988 999999999999999999999999999999987 5899999996
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEec-cCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh~-rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|++.++++++++.+++.|+|+|+||+ ++..... .+......+..+++|+.+++||+++|+|+++++++++++++
T Consensus 630 ~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 630 WVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 45677899999999999999999994 4432211 11112345667889999999999999999999999999998
Q ss_pred CccEEEEehhhhhCccchhc
Q 023070 160 GCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~ 179 (287)
+||+||+||++++||+|..+
T Consensus 710 ~~D~v~~gR~~l~dP~~~~~ 729 (765)
T PRK08255 710 RADLCALARPHLADPAWTLH 729 (765)
T ss_pred CcceeeEcHHHHhCccHHHH
Confidence 99999999999999955443
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=194.13 Aligned_cols=166 Identities=20% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+++||+|++++++.++|+.++ .|+|+|+||++||... .+..|.. .++.+.++++++++.+++||++|++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 589999999999999999999775 4899999999997632 2333432 346688999999999999999999874
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
. .+..++++.++++|+++|++|+|+.... .+.+++ ..|+.++++++.+++|||++|||+|++|
T Consensus 176 ~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 F--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred c--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 4 4678899999999999999998864321 011222 2367788888888999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+.+++. +|||+||+||+++. +|.++.++.
T Consensus 254 a~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 254 VIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred HHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 999998 79999999999998 498777653
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=193.99 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=137.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ .||.+|+..
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 6899999965 5799999998 779999999999999999999999999999999984 689999876
Q ss_pred ----CCChhhHHHHHHHHHHcC-CCEEEEeccCCC--CcCCCC-ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 86 ----FPNLQDTIKYAKMLEDAG-CSLLAVHGRTRD--EKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G-~~~I~vh~rt~~--~~~~~~-~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
|++.++..++++.+++.| +++|++.+.... +..... ..........++..+.+|||++|+|++++.++++++
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 345668899999999999 799999765443 111111 123446667788888899999999999999999999
Q ss_pred hcCccEEEEehhhhhCccchhchhh
Q 023070 158 ETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.+.||.|.+||+++.||+|..+++.
T Consensus 309 ~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 309 SGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred cCCCCEEEechhhhcCccHHHHHHc
Confidence 7679999999999999999998875
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=186.03 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecC----
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV---- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~---- 85 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ ..|.+|+..
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 6889999865 5799999999 569999999999999999999999999999999884 258888753
Q ss_pred -----CCChhh-HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 -----FPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 -----g~~~~~-~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|.+.++ ++++++.+++.|+|+|.|+........ +......+++++.+++||+++|++ |++.++++++++
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~----~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G 313 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGE----PYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKG 313 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCc----cccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC
Confidence 245566 799999999999999999864322111 223456688898899999999996 899999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||+|++||++++||+|+++++.
T Consensus 314 ~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 314 LIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred CCCEEEECHHhhhCccHHHHHhc
Confidence 79999999999999999998864
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=188.59 Aligned_cols=163 Identities=28% Similarity=0.379 Sum_probs=129.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g- 86 (287)
.++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.+ ++||.+|+...
T Consensus 148 i~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~ 227 (341)
T PF00724_consen 148 IEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeec
Confidence 36889999865 5799999999 55999999999999999999999999999999987 58899998773
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCC------CCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTR------DEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 153 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~------~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~ 153 (287)
.+.+++.++++.+++.|++.+.++.... ... .........+....+++.+++|||++|+|.+++.+.
T Consensus 228 ~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae 307 (341)
T PF00724_consen 228 FVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAE 307 (341)
T ss_dssp SSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhH
Confidence 2346778889999999999886642211 110 111112345778888998999999999999999999
Q ss_pred HHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 154 KCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 154 ~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++++.||.|.+||++++||+|.++++.
T Consensus 308 ~~l~~g~~DlV~~gR~~ladPd~~~k~~~ 336 (341)
T PF00724_consen 308 KALEEGKADLVAMGRPLLADPDLPNKARE 336 (341)
T ss_dssp HHHHTTSTSEEEESHHHHH-TTHHHHHHH
T ss_pred HHHhcCCceEeeccHHHHhCchHHHHHHc
Confidence 99999889999999999999999998875
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=181.22 Aligned_cols=170 Identities=20% Similarity=0.292 Sum_probs=136.9
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCA-NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g-~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
++|+|++|+| .++++|.+.++.+++ |+|+||||++||+...-++ .|..+.++|+.+.++++++++.+++||.+|+..
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 6899999977 899999999998765 8999999999999533333 588899999999999999999889999999865
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCC-------Cc------------CCCCccc----cHHHHHHHHhhC------
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------EK------------DGKKFRA----DWNAIKAVKNAL------ 136 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~-------~~------------~~~~~~~----~~~~i~~i~~~~------ 136 (287)
+..+..++++.+.++|+++|++..++.. .. .+.+|++ .+..+.++++.+
T Consensus 192 --n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~ 269 (385)
T PLN02495 192 --NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPE 269 (385)
T ss_pred --ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccC
Confidence 5556888999999999999999765432 00 0111121 223344455554
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
++|||+.|||.|.+|+.+++. .||+.|+++++++.+ |.++.++.
T Consensus 270 ~ipIiGvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~ 314 (385)
T PLN02495 270 DRSLSGIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLC 314 (385)
T ss_pred CCcEEEECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHH
Confidence 499999999999999999999 599999999999887 99988764
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-21 Score=175.62 Aligned_cols=169 Identities=18% Similarity=0.255 Sum_probs=139.0
Q ss_pred CCCCCEEEEecCC-------CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--
Q 023070 6 PEDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 76 (287)
Q Consensus 6 ~~~~p~~~Qi~g~-------~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-- 76 (287)
..+.|++++++++ ..++|++.++.+...+|+||||++||+.. |.....+++.+.+++++|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~ 205 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGL 205 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhh
Confidence 3467999999887 58999999998877899999999999852 33445789999999999988776
Q ss_pred -----CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCccc----cHHHHHHHHhhC
Q 023070 77 -----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFRA----DWNAIKAVKNAL 136 (287)
Q Consensus 77 -----~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~~----~~~~i~~i~~~~ 136 (287)
+||.+|+....+.++..++++.++++|+++|++..++... ..+.+|++ .+.+++++++.+
T Consensus 206 ~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~ 285 (335)
T TIGR01036 206 RRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAEL 285 (335)
T ss_pred hhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 9999999887776688999999999999999997654321 11222322 356778888776
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
++|||+.|||.|++|+.+++. .|||.|++|++++. +|+++.++.
T Consensus 286 ~~~ipiig~GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 286 QGRLPIIGVGGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred CCCCCEEEECCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHHHH
Confidence 699999999999999999999 59999999999977 699998775
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=168.44 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=141.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.+++....+...+.|.+.+..++. + +|+|+||++||+. ++ |..+-++++.+.++++++++...+||.||+.
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 45679999999999999999987764 6 8999999999993 22 7778889999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC---------------cCCCCcc----ccHHHHHHHHhhCC--CcEEEe
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFR----ADWNAIKAVKNALR--IPVLAN 143 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~---------------~~~~~~~----~~~~~i~~i~~~~~--ipVi~n 143 (287)
. +..+..++|+.+.++|+|+|++...+... ..+.+|+ ..+..++++++.++ +|||+.
T Consensus 170 P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 P--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred C--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 6 77899999999999999999987533311 1122332 35678999999876 999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
|||.|.+|+.+++. .||+.|++|++++.+ |++|.++.
T Consensus 248 GGI~s~~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~ 285 (310)
T COG0167 248 GGIETGEDALEFIL-AGASAVQVGTALIYKGPGIVKEII 285 (310)
T ss_pred cCcCcHHHHHHHHH-cCCchheeeeeeeeeCchHHHHHH
Confidence 99999999999999 599999999999887 99999774
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=177.03 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=127.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|+++++ -.|.+|+....
T Consensus 165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~ 244 (391)
T PLN02411 165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH 244 (391)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence 6899999865 5799999999 569999999999999999999999999999999984 24888887421
Q ss_pred -------ChhhHHHHHHHHHHc------CCCEEEEeccCCCCc---CC-CCc-ccc-HHHHHHHHhhCCCcEEEecCCCC
Q 023070 88 -------NLQDTIKYAKMLEDA------GCSLLAVHGRTRDEK---DG-KKF-RAD-WNAIKAVKNALRIPVLANGNVRH 148 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~------G~~~I~vh~rt~~~~---~~-~~~-~~~-~~~i~~i~~~~~ipVi~nGgI~s 148 (287)
..++..++++.+++. |+|+|.|........ .. ..+ ... ..+.+.+++.+++||+++|+| +
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 123466778887763 599999976532110 00 000 111 245678899999999999999 5
Q ss_pred HHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++.++++++.||.|.+||++++||+|..+++.
T Consensus 324 ~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 324 RELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 7999999997679999999999999999998864
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=171.01 Aligned_cols=168 Identities=17% Similarity=0.299 Sum_probs=129.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+|+||.|.++++|.+.|+.++. + +|+||||++||+.. + +..+-.+++.+.++++++++.+.+||.+|+..
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPP 166 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHHHhcCCccEEecCC
Confidence 5899999999999999999998765 6 89999999999841 1 44455689999999999999999999999988
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecc----------CCCC----c---CCCCcc----ccHHHHHHHHhhC--CCcEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGR----------TRDE----K---DGKKFR----ADWNAIKAVKNAL--RIPVLA 142 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~r----------t~~~----~---~~~~~~----~~~~~i~~i~~~~--~ipVi~ 142 (287)
..+..+..+.+..+.+.|++.|....+ +... . .+.+|+ ..+..++++++.+ ++|||+
T Consensus 167 ~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig 246 (310)
T PRK02506 167 YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIG 246 (310)
T ss_pred CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEE
Confidence 655444445555555667777644321 1100 0 111222 2456677887777 699999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||.|.+|+.+++. .|||.||++++++. +|.++.++.
T Consensus 247 ~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~ 285 (310)
T PRK02506 247 TGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLT 285 (310)
T ss_pred ECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHH
Confidence 999999999999998 69999999999887 899998764
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=166.40 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=134.9
Q ss_pred CCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---------
Q 023070 9 RPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--------- 74 (287)
Q Consensus 9 ~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--------- 74 (287)
.|++++|+++ .+++|.+.++.+...+|+|+||..||+.. |-.-+.+++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 3899999888 68999999998888899999999999952 223356788999999988643
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC------------cCCCCccc----cHHHHHHHHhhC--
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFRA----DWNAIKAVKNAL-- 136 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~------------~~~~~~~~----~~~~i~~i~~~~-- 136 (287)
..+||.||+....+.++..++++.+.++|+++|++...+... ..+.+|++ .++.++++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 468999998876666788899999999999999998654311 11223332 467788888887
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
++|||+.|||.|.+|+.+++. .||+.|+++++++. +|+++.++.
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHHHH
Confidence 799999999999999999999 59999999999876 598887664
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=164.03 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=132.0
Q ss_pred CCCEEEEecCCC---HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 8 DRPLFVQFCAND---PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~---~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
..|+++++.|.+ .++|.+.|+.+++++|+||||+.||+.. .+..+..+++...++++.+++..++||.||+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 579999999999 9999999998889999999999999853 24456678899999999999888999999998
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCC----------Cc-----CCCCccc----cHHHHHHHHhhCC--CcEEEe
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------EK-----DGKKFRA----DWNAIKAVKNALR--IPVLAN 143 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~----------~~-----~~~~~~~----~~~~i~~i~~~~~--ipVi~n 143 (287)
...+.......+..+.+.|+++|++..++.. .. .+.+|++ .+.+++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 7555455566777777999999985433210 00 0112332 4677888998887 999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchhh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 182 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~~ 182 (287)
|||.|++|+.+++. .|||.|++++++ +.+|+++.++..
T Consensus 251 GGI~s~~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 251 GGIHSGEDAIEFLM-AGASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp SS--SHHHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHH
T ss_pred CCcCCHHHHHHHHH-hCCCHheechhhhhcCcHHHHHHHH
Confidence 99999999999999 599999999999 779999998753
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=162.69 Aligned_cols=142 Identities=26% Similarity=0.260 Sum_probs=116.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.+||++. +++.+.++++.++ .|+|+|++|++||+...+ ...++++++++.+++||++|...
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~ 181 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGIL 181 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecC
Confidence 37999999987 9999999988664 589999999999984222 23467888888888999999542
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
..+.++.+.++|+++|+|+++...+ .+.+++.|+.+.++++.+ ++|||++|||+++.|+.+++. .|||+
T Consensus 182 ------s~~~a~~a~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~ 252 (299)
T cd02809 182 ------TPEDALRAVDAGADGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADA 252 (299)
T ss_pred ------CHHHHHHHHHCCCCEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCE
Confidence 2466889999999999997655332 234578899999998877 599999999999999999998 79999
Q ss_pred EEEehhhh
Q 023070 164 VLSAESLL 171 (287)
Q Consensus 164 VmiGR~~l 171 (287)
||+||+++
T Consensus 253 V~ig~~~l 260 (299)
T cd02809 253 VLIGRPFL 260 (299)
T ss_pred EEEcHHHH
Confidence 99999444
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=148.45 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=103.8
Q ss_pred ccccccCChHHHHHHHHHHhhcc--CCcE---EEEecCCCCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNL--NVPV---SCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~--~~pv---~vKiR~g~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~ 125 (287)
.|++++++|+++.++++++.+.+ .+++ .+|++ ||+. .++.++++.+++.|++.|++|++++.+++. | +|
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~--G-~d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLT--G-PN 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCcc--C-CC
Confidence 57999999999999999987665 3344 45553 6642 367899999999999999999999998754 3 59
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCccEEEEehhhhhCccchhch
Q 023070 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLE--ETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 126 ~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~--~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
|+.++++++.+++|||+||||+|++|+.++++ .+|||+||+||+++.++.-+.++
T Consensus 179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 179 LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEA 235 (241)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence 99999999999999999999999999998864 36999999999999988655443
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=141.69 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=117.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g------ 86 (287)
+|++| ....+.++.+++..|++.|.|| ++++.+|+++.++++++.+. .+++++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 56655 6666677777777799999997 56778999999999988532 26777777655
Q ss_pred -----C---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 87 -----P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 87 -----~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
| ...+..++++.+++.|++.+++|++++.+++.+ .||+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G---~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG---YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC---CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 223578999999999999999999999887653 69999999999999999999999999999999966
Q ss_pred cCccEEEEehhhhhC
Q 023070 159 TGCEGVLSAESLLEN 173 (287)
Q Consensus 159 ~gad~VmiGR~~l~n 173 (287)
+|||+|++|++++-.
T Consensus 218 ~GvdgVivg~a~~~~ 232 (258)
T PRK01033 218 LGADAAAAGSLFVFK 232 (258)
T ss_pred CCCCEEEEcceeeeC
Confidence 899999999998755
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-16 Score=142.83 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=116.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.+.|+++++++. +++++.++.+.+ ++|+++||++|++......++. +.+.+.+.++.+++.+++||.+
T Consensus 112 ~~~p~i~nl~~~~~~~~~~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 112 PNGPLIANIGAPQLVEGGPEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred CCCcEEeecCchhhccccHHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEE
Confidence 478999988753 355566666655 5789999999999776666543 3456778999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------c--CC--CCccccH-----HHHHHHHh-hCCCcEEEec
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------K--DG--KKFRADW-----NAIKAVKN-ALRIPVLANG 144 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~--~~--~~~~~~~-----~~i~~i~~-~~~ipVi~nG 144 (287)
|.. |. ....+.++.++++|+|+|+|+|+.... + .. .....+| +.+.++++ .+++|||++|
T Consensus 185 K~~-g~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasG 261 (333)
T TIGR02151 185 KEV-GF--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASG 261 (333)
T ss_pred Eec-CC--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEEC
Confidence 975 32 235788999999999999999864211 0 00 0112344 45666666 4689999999
Q ss_pred CCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 145 NVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 145 gI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
||+++.|+.+++. .|||+|++||+++.
T Consensus 262 GI~~~~di~kaLa-lGAd~V~igr~~L~ 288 (333)
T TIGR02151 262 GLRTGLDVAKAIA-LGADAVGMARPFLK 288 (333)
T ss_pred CCCCHHHHHHHHH-hCCCeehhhHHHHH
Confidence 9999999999999 58999999999984
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=141.39 Aligned_cols=138 Identities=22% Similarity=0.329 Sum_probs=103.9
Q ss_pred HHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 25 NAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 25 ~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
++|+++++ |++.|.+|.|||+..++++ |.+++++|+.+. +|++.+++||+.|+|.|. ..-++.|+++|
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~G 96 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEALG 96 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHcC
Confidence 56777765 9999999999999987777 999999999887 555567999999999863 22244444555
Q ss_pred CCEEEEec-----------------------------------------------------------------------c
Q 023070 104 CSLLAVHG-----------------------------------------------------------------------R 112 (287)
Q Consensus 104 ~~~I~vh~-----------------------------------------------------------------------r 112 (287)
+|+|.-+. .
T Consensus 97 vDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 97 VDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred CCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 55543321 1
Q ss_pred CCCCcCC--CCccccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 113 TRDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 113 t~~~~~~--~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
|.+.... ....++|+.++++++..++||+ +.|||.|++++..+++ .|||+|++|++++..+
T Consensus 177 t~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 177 SEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSG 241 (293)
T ss_pred CHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCC
Confidence 1111000 0124689999999998899998 9999999999999998 6999999999998433
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=132.13 Aligned_cols=143 Identities=23% Similarity=0.225 Sum_probs=109.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec----CCC-
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR----VFP- 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR----~g~- 87 (287)
+|+.| ......++.++++.|+|.|- .|++++.+|+.+.++++.+.+.+-+++.+|.+ .+|
T Consensus 77 v~~~G-GI~~~ed~~~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQVGG-GIRSLETVEALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEEcC-CcCCHHHHHHHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 44433 33444444445556777764 36788889999999999886554444444321 234
Q ss_pred --ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 --~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+..+..++++.+++.|++.|++|+++++++.. + +||+.++++++.+++|||++|||+|++|+.++++.+|||+||
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 23466899999999999999999999887654 2 799999999999999999999999999999999976699999
Q ss_pred EehhhhhC
Q 023070 166 SAESLLEN 173 (287)
Q Consensus 166 iGR~~l~n 173 (287)
+||+++..
T Consensus 219 vg~a~~~~ 226 (233)
T PRK00748 219 VGRALYEG 226 (233)
T ss_pred EEHHHHcC
Confidence 99999865
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=137.05 Aligned_cols=154 Identities=23% Similarity=0.243 Sum_probs=116.6
Q ss_pred CCCEEEEecC-----CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCA-----NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g-----~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|++++|+. .+++.+.++.+.+ ++|+++||++||+......++ .+.+.+.+.++++++.+++||.+|
T Consensus 120 ~~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK 192 (352)
T PRK05437 120 DGLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVK 192 (352)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEE
Confidence 7789886655 4467777777666 569999999999976665542 356667899999999899999999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cC----CCC-----ccccHHHHHHHHhh-CCCcEEEecC
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KD----GKK-----FRADWNAIKAVKNA-LRIPVLANGN 145 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~----~~~-----~~~~~~~i~~i~~~-~~ipVi~nGg 145 (287)
.... ..+.+.++.++++|+|+|+|+|+.... +. ... +.+-.+.+.++++. .++|||++||
T Consensus 193 ~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GG 269 (352)
T PRK05437 193 EVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGG 269 (352)
T ss_pred eCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECC
Confidence 8632 233678899999999999998763210 00 000 11223467777777 5899999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|+|+.|+.+++.. |||+|++||+++.
T Consensus 270 I~~~~dv~k~l~~-GAd~v~ig~~~l~ 295 (352)
T PRK05437 270 IRNGLDIAKALAL-GADAVGMAGPFLK 295 (352)
T ss_pred CCCHHHHHHHHHc-CCCEEEEhHHHHH
Confidence 9999999999995 8999999999985
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=133.01 Aligned_cols=136 Identities=26% Similarity=0.351 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEecC----------CC--Ch
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRV----------FP--NL 89 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~----------g~--~~ 89 (287)
...+.+.++.|+|.|.++ +.++.+|+.+.++++.+.+ .+-+++.+|.|. ++ +.
T Consensus 83 ~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~ 148 (243)
T cd04731 83 LEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG 148 (243)
T ss_pred HHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC
Confidence 333444445688888775 5667899999999998853 344556555443 32 23
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|+++|++|+++..+... ..+|+.++++++.+++||+++|||++++|+.++++.+|||+||+||+
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~---g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKK---GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 567899999999999999999998765432 36899999999999999999999999999999999889999999999
Q ss_pred hhhCcc
Q 023070 170 LLENPA 175 (287)
Q Consensus 170 ~l~nP~ 175 (287)
++..-.
T Consensus 226 l~~~~~ 231 (243)
T cd04731 226 FHFGEY 231 (243)
T ss_pred HHcCCC
Confidence 986543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=131.58 Aligned_cols=139 Identities=23% Similarity=0.309 Sum_probs=112.1
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g------ 86 (287)
+|+ |+++..+..+.++.+.|++.|.+| +.++++|+++.++++...+. .++++++++.+
T Consensus 77 v~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~ 140 (232)
T TIGR03572 77 LTV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDY 140 (232)
T ss_pred EEE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcE
Confidence 344 556666667666667789999886 66788999999999887433 26677777663
Q ss_pred ------C---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 87 ------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 87 ------~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
| ...++.++++.+++.|++.|++|+++..+... ..+|+.++++++.+++||+++|||+|++|+.+++.
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~ 217 (232)
T TIGR03572 141 KVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMK---GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVAL 217 (232)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcC---CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH
Confidence 1 13457899999999999999999988875433 36899999999999999999999999999999777
Q ss_pred hcCccEEEEehhh
Q 023070 158 ETGCEGVLSAESL 170 (287)
Q Consensus 158 ~~gad~VmiGR~~ 170 (287)
.+|||+|++|+++
T Consensus 218 ~~gadgV~vg~a~ 230 (232)
T TIGR03572 218 EAGASAVAAASLF 230 (232)
T ss_pred HcCCCEEEEehhh
Confidence 7899999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-16 Score=142.81 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=114.7
Q ss_pred CCCCCCEEEEecC--CCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 5 PPEDRPLFVQFCA--NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 5 ~~~~~p~~~Qi~g--~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
+++..|+.+||+| ++|+. ++|++.+++ +++. .+|+++.+++++++++. |++
T Consensus 82 ~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---Vtv 135 (369)
T TIGR01304 82 HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VIT 135 (369)
T ss_pred CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEE
Confidence 4556788999999 67777 888887765 5554 37999999999999873 999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
|+|+++ .++.++++.++++|++.|++|+|++++.+.. +..+|..+.++++..++|||+ |+|.|.+++.++++ +||
T Consensus 136 kiRl~~--~~~~e~a~~l~eAGad~I~ihgrt~~q~~~s-g~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGa 210 (369)
T TIGR01304 136 AVRVSP--QNAREIAPIVVKAGADLLVIQGTLVSAEHVS-TSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGA 210 (369)
T ss_pred EEecCC--cCHHHHHHHHHHCCCCEEEEeccchhhhccC-CCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCC
Confidence 999953 5788999999999999999999999876522 346888899988889999998 99999999999998 799
Q ss_pred cEEEEehhhh
Q 023070 162 EGVLSAESLL 171 (287)
Q Consensus 162 d~VmiGR~~l 171 (287)
|+||+|++.-
T Consensus 211 DgV~~G~gg~ 220 (369)
T TIGR01304 211 AGVIVGPGGA 220 (369)
T ss_pred CEEEECCCCC
Confidence 9999998764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=129.55 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=112.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEec----C
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR----V 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR----~ 85 (287)
+-+|+.|. .....++.++++.|+|.|-+ |+.++.+|+++.++.+.+.+ .+-+++.+|.+ .
T Consensus 74 ~pv~~~Gg-I~~~e~~~~~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~ 138 (234)
T cd04732 74 IPVQVGGG-IRSLEDIERLLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATK 138 (234)
T ss_pred CCEEEeCC-cCCHHHHHHHHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEEC
Confidence 34666553 44455555566678888744 56778899999999998754 32223333221 1
Q ss_pred CC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+| +..+..++++.+++.|++.+++|++++.+... ..+|+.++++++.+++||+++|||++++|+.++++ .|||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~---g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~ 214 (234)
T cd04732 139 GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS---GPNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVA 214 (234)
T ss_pred CCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC---CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCC
Confidence 22 23467899999999999999999998876543 38899999999999999999999999999999998 5999
Q ss_pred EEEEehhhhhCccc
Q 023070 163 GVLSAESLLENPAL 176 (287)
Q Consensus 163 ~VmiGR~~l~nP~l 176 (287)
+||+||+++.++--
T Consensus 215 gv~vg~~~~~~~~~ 228 (234)
T cd04732 215 GVIVGKALYEGKIT 228 (234)
T ss_pred EEEEeHHHHcCCCC
Confidence 99999999999853
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=132.38 Aligned_cols=154 Identities=27% Similarity=0.348 Sum_probs=114.0
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|++++++.. +++++.++.+.+ ++|+++||++||+......+. ++.+.+.+.++.+++.+++||.+|
T Consensus 112 ~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK 184 (326)
T cd02811 112 NGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVK 184 (326)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 57888777664 567777776655 579999999998865555532 355667788999999899999999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC--C-----cCCC------CccccH-----HHHHHHHhhC-CCcEEEe
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--E-----KDGK------KFRADW-----NAIKAVKNAL-RIPVLAN 143 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--~-----~~~~------~~~~~~-----~~i~~i~~~~-~ipVi~n 143 (287)
.... ..+.+.++.++++|+|+|+|+|+-.. . +... ....+| ..+.++++.+ ++|||++
T Consensus 185 ~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIias 261 (326)
T cd02811 185 EVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIAS 261 (326)
T ss_pred ecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEE
Confidence 7432 23367889999999999999874110 0 0000 001223 4566777766 8999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|||++..|+.+++. .|||+|++||+++.
T Consensus 262 GGIr~~~dv~kal~-lGAd~V~i~~~~L~ 289 (326)
T cd02811 262 GGIRNGLDIAKALA-LGADLVGMAGPFLK 289 (326)
T ss_pred CCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Confidence 99999999999999 48999999999873
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=125.98 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEE---ec-C
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCK---IR-V 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vK---iR-~ 85 (287)
+-+|+.| ....+.++..+++.|+|.|-+ |+.++++|+.+.++.+.+.. .+-+.+++| +. .
T Consensus 77 ~~l~v~G-Gi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 77 VPVQLGG-GIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred CcEEEcC-CcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 4456633 334444445555679998866 56778899999999888632 221222322 11 1
Q ss_pred CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
||.. .+..++++.+++.|++.|++|+++..+... ..+|+.++++++.+++||+++|||+|++|+.++++ .||+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~ 217 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLE---GVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAA 217 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCC
Confidence 4432 267899999999999999999998765432 47999999999999999999999999999999765 7999
Q ss_pred EEEEehhhhhCccchhchh
Q 023070 163 GVLSAESLLENPALFAGFR 181 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~ 181 (287)
+|++|++++.+|..+.++.
T Consensus 218 gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 218 GVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred EEEEEHHHhcCCcCHHHHH
Confidence 9999999999999877553
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-14 Score=123.78 Aligned_cols=141 Identities=25% Similarity=0.267 Sum_probs=109.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHh-hccCCcEEEEecC-----
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-LNLNVPVSCKIRV----- 85 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~-~~~~~pv~vKiR~----- 85 (287)
-+|+.| ......++.++++.|+|.|=+ |+.++++|+.+.++++++. +. +.+++++|.
T Consensus 74 pi~~gg-GI~~~ed~~~~~~~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~ 136 (230)
T TIGR00007 74 PVQVGG-GIRSLEDVEKLLDLGVDRVII--------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAV 136 (230)
T ss_pred CEEEeC-CcCCHHHHHHHHHcCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEE
Confidence 345533 334444444455578887743 5677789999999999885 33 455555553
Q ss_pred -CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 -FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 -g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
||. ..+..++++.+++.|++.+++|.+++.++.. ..||+.++++++.+++||+++|||+|++|+.++++ +||
T Consensus 137 ~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~---g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Ga 212 (230)
T TIGR00007 137 KGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLS---GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGV 212 (230)
T ss_pred cCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCC
Confidence 343 2366889999999999999999999887543 37899999999999999999999999999999887 799
Q ss_pred cEEEEehhhhhC
Q 023070 162 EGVLSAESLLEN 173 (287)
Q Consensus 162 d~VmiGR~~l~n 173 (287)
|+||+||+++.+
T Consensus 213 dgv~ig~a~~~~ 224 (230)
T TIGR00007 213 YGVIVGKALYEG 224 (230)
T ss_pred CEEEEeHHHHcC
Confidence 999999999976
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=116.01 Aligned_cols=142 Identities=23% Similarity=0.248 Sum_probs=109.3
Q ss_pred CCCCEEEEecCCCHHHHHH-HHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLN-AAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~-aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
.+.|+++|+..+++..+.. +|+ ..+.|+|+|+||.+||.. ++...++++++++.+ ++|+.+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~ 121 (200)
T cd04722 56 TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKL 121 (200)
T ss_pred cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEE
Confidence 4689999999998887665 234 445699999999999864 788899999999887 89999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+........ .+.+.|+++|.++++...+......+.....+..++...++||+++|||.+++++.++++. |||+
T Consensus 122 ~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~ 195 (200)
T cd04722 122 SPTGELAAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADG 195 (200)
T ss_pred CCCCccchh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCE
Confidence 875432221 1678899999999887654322111111244566667788999999999999999999995 9999
Q ss_pred EEEeh
Q 023070 164 VLSAE 168 (287)
Q Consensus 164 VmiGR 168 (287)
|++||
T Consensus 196 v~vgs 200 (200)
T cd04722 196 VIVGS 200 (200)
T ss_pred EEecC
Confidence 99997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-14 Score=124.84 Aligned_cols=128 Identities=20% Similarity=0.300 Sum_probs=103.1
Q ss_pred HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHh-h----ccC-------CcEEEEecCCCCh--hhHHH
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-L----NLN-------VPVSCKIRVFPNL--QDTIK 94 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~-~----~~~-------~pv~vKiR~g~~~--~~~~~ 94 (287)
.++.|++.|-++ +.++++|+++.++.+.+. + .++ .|++||+|.++.. ....+
T Consensus 92 ~l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (253)
T PRK02083 92 LLRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVE 157 (253)
T ss_pred HHHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHH
Confidence 344577877664 667789999999999873 1 223 4678999887643 36678
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+++.+++.|++.+++|+..+.++.. ..||+.++++++.+++|||++|||.|.+|+.++++.+|||+||+|++++..
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~---g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKN---GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCC---CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 9999999999999998866554333 268999999999999999999999999999999987799999999999865
|
|
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=129.91 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=124.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEec---
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR--- 84 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR--- 84 (287)
.|-++.||+.+ +.|||+|||| |-.|..|.|+|.||+++.+|.+++.|++++|++.+. .+..+-..
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 35677788877 7899999999 669999999999999999999999999999999872 33333322
Q ss_pred ---CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cCCCC--ccccHHHHHHHHhhCCCcEE-EecCCCCHHH
Q 023070 85 ---VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGKK--FRADWNAIKAVKNALRIPVL-ANGNVRHMED 151 (287)
Q Consensus 85 ---~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~~~~--~~~~~~~i~~i~~~~~ipVi-~nGgI~s~~d 151 (287)
.+++.++...++..+++.|++.+-++|++... ++... -....+....++...+.||| ++|+.++.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 14566778888999999999966665544321 11100 01223555666666666666 6678999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+.++++....|+|..||.+++||+|..++..
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl~~ 363 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRLLN 363 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHHHh
Confidence 9999999888999999999999999998864
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=122.75 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=95.0
Q ss_pred cccccCChHHHHHHHHHHh-hcc--CC-----cE------EEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCc
Q 023070 54 GAFLMDNLPLVKSLVEKLA-LNL--NV-----PV------SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEK 117 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~-~~~--~~-----pv------~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~ 117 (287)
|+.++.+|+++.++.+... +.+ .+ ++ .||+|.+++ ..+..++++.+++.|++.|++|++++.++
T Consensus 103 gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~ 182 (254)
T TIGR00735 103 NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182 (254)
T ss_pred ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC
Confidence 5677789999999988773 222 11 11 366666543 34678999999999999999999888654
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.. .++|+.++++++.+++||+++|||+|++|+.++++.++||+||+|++++..
T Consensus 183 ~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 183 KS---GYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred CC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 32 489999999999999999999999999999999997679999999998754
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=114.21 Aligned_cols=150 Identities=25% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC---
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--- 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--- 85 (287)
.++-+|++|. .-+...+.++++.|++-|-+ |+...++|+++.++++..... +-|++..|.
T Consensus 74 ~~~~vQvGGG-IRs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~v 136 (241)
T COG0106 74 TDVPVQVGGG-IRSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGKV 136 (241)
T ss_pred CCCCEEeeCC-cCCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCcc
Confidence 4567899774 34445555667788877766 677789999999999998744 455555554
Q ss_pred ---CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ---g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
||.. -+..++++++++.|+..|.+|..+++++.. ..|++.++++.+.+++||+++|||.|.+|+..+-+..
T Consensus 137 av~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~---G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~ 213 (241)
T COG0106 137 AVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLS---GPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELS 213 (241)
T ss_pred ccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccC---CCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcC
Confidence 5642 267899999999999999999999987655 3899999999999999999999999999999777632
Q ss_pred CccEEEEehhhhhCccchh
Q 023070 160 GCEGVLSAESLLENPALFA 178 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~ 178 (287)
|++||.+||++|..-.-+.
T Consensus 214 G~~GvIvG~ALy~g~~~l~ 232 (241)
T COG0106 214 GVEGVIVGRALYEGKFTLE 232 (241)
T ss_pred CCcEEEEehHHhcCCCCHH
Confidence 8999999999998766443
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=122.44 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
.+|+++.++++++++. + |++|+|+ +..+..++++.+.++|++.|++|+||.++.+..+ ..+|..+.++++..++
T Consensus 115 ~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~-~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 115 IKPELITERIAEIRDA-G--VIVAVSL--SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSK-EGEPLNLKEFIYELDV 188 (368)
T ss_pred CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCC-cCCHHHHHHHHHHCCC
Confidence 4699999999999986 3 5566666 3356789999999999999999999988765431 1278888888878899
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
|||+ |+|.|++++.++++ +|||+||+|++-
T Consensus 189 pVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 189 PVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999 89999999999998 799999999874
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=112.47 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHcCCC--CEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~--d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
|.+++++.++.+++++|+ |.|-|...- .+.+.+.++++.+++.. ++||.++ +. .+.
T Consensus 93 g~~~~~~~~~~~Lv~ag~~~d~i~iD~a~---------------gh~~~~~e~I~~ir~~~p~~~vi~g-----~V-~t~ 151 (326)
T PRK05458 93 GVKDDEYDFVDQLAAEGLTPEYITIDIAH---------------GHSDSVINMIQHIKKHLPETFVIAG-----NV-GTP 151 (326)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CchHHHHHHHHHHHhhCCCCeEEEE-----ec-CCH
Confidence 346899999999999954 999986432 24567788899999887 5888887 11 135
Q ss_pred HHHHHHHHcCCCEEEEe---ccCCCC-cCCCCccccHH--HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGCSLLAVH---GRTRDE-KDGKKFRADWN--AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh---~rt~~~-~~~~~~~~~~~--~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+-++.+.++|+|++.|+ |+...+ .....+.++|. .++.+++.+++|||++|||+++.|+.++|. .|||+||+|
T Consensus 152 e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG 230 (326)
T PRK05458 152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIG 230 (326)
T ss_pred HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEec
Confidence 66788899999999886 332111 11122356776 488888888999999999999999999999 499999999
Q ss_pred hhhhh
Q 023070 168 ESLLE 172 (287)
Q Consensus 168 R~~l~ 172 (287)
+.+..
T Consensus 231 ~~~~~ 235 (326)
T PRK05458 231 SLFAG 235 (326)
T ss_pred hhhcC
Confidence 88874
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=112.08 Aligned_cols=137 Identities=22% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.++...|..-.....+++.+++.|.+++|.|. ++++.+++. ++.|...+.
T Consensus 62 ~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~--- 117 (307)
T TIGR03151 62 DKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA--- 117 (307)
T ss_pred CCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC---
Confidence 56777777665544322222245667888877665542 355555544 666666542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+.++.++++|+|.|++||+...+..+ ...+|..++++++.+++|||++|||.+++++.+++. .|||+|++|
T Consensus 118 ----s~~~a~~a~~~GaD~Ivv~g~eagGh~g--~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~GA~gV~iG 190 (307)
T TIGR03151 118 ----SVALAKRMEKAGADAVIAEGMESGGHIG--ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-LGAEAVQMG 190 (307)
T ss_pred ----CHHHHHHHHHcCCCEEEEECcccCCCCC--CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEeecc
Confidence 2467889999999999999996654322 135799999999999999999999999999999998 699999999
Q ss_pred hhhhhCcc
Q 023070 168 ESLLENPA 175 (287)
Q Consensus 168 R~~l~nP~ 175 (287)
+.++.-+.
T Consensus 191 t~f~~t~E 198 (307)
T TIGR03151 191 TRFLCAKE 198 (307)
T ss_pred hHHhcccc
Confidence 99987554
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=114.69 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=110.9
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---cc------------------ccccc-----
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NY------------------GAFLM----- 58 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~------------------G~~l~----- 58 (287)
+.|..+|+.-. |.+......+.++ .|+..|=+...+|.. +..++ ++ |....
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA 203 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence 35789999874 5555555555554 599998888766552 11110 00 00000
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
-++.+..+.++.+++.+++||.+|- . ...+.++.+.++|+|+|+| ||+.. ...++..++.+.++++.+
T Consensus 204 ~~~~~~~~~l~~lr~~~~~PvivKg---v---~~~~dA~~a~~~G~d~I~vsnhGGr~----ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 204 AKQKLSPADIEFIAKISGLPVIVKG---I---QSPEDADVAINAGADGIWVSNHGGRQ----LDGGPASFDSLPEIAEAV 273 (351)
T ss_pred ccCCCCHHHHHHHHHHhCCcEEEec---C---CCHHHHHHHHHcCCCEEEEeCCCCcc----CCCCchHHHHHHHHHHHh
Confidence 0123445777888888899999992 1 2346788899999999999 66422 223467788999998887
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++|||++|||++..|+.++|. .|||+||+||+++...
T Consensus 274 ~~~i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~~l 312 (351)
T cd04737 274 NHRVPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLYGL 312 (351)
T ss_pred CCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHH
Confidence 699999999999999999999 7999999999888644
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-11 Score=112.83 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=109.7
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh----cC----------------cccccc-----cC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR----RG----------------NYGAFL-----MD 59 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~----~~----------------~~G~~l-----~~ 59 (287)
+.|...||.-. |.+...+..+.++ .|+.+|=|..-+|.. +.. .+ +.+... ..
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSA 211 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcccc
Confidence 45899999884 4454455666664 599998887666642 110 00 001000 01
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhC-
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL- 136 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~- 136 (287)
++.+.-+-++.+++.+++||++| |.. ..+.++.+.++|+++|.| ||+. +.+.+++.|+.+.++++.+
T Consensus 212 ~~~~~w~~i~~l~~~~~~PvivK---Gv~---~~eda~~a~~~Gvd~I~VS~HGGr----q~~~~~a~~~~L~ei~~av~ 281 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYSGLPVYVK---GPQ---CPEDADRALKAGASGIWVTNHGGR----QLDGGPAAFDSLQEVAEAVD 281 (367)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEe---CCC---CHHHHHHHHHcCcCEEEECCcCcc----CCCCCCcHHHHHHHHHHHhC
Confidence 23333466888888889999999 322 256788999999999876 6642 2334577899999999876
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 137 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 137 -~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++|||++|||++..|+.++|. .|||+|||||+++.
T Consensus 282 ~~i~vi~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 282 KRVPIVFDSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred CCCcEEeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 499999999999999999999 79999999998874
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=110.54 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=121.7
Q ss_pred CCCCCCCEEEEecCCC-----HHHHHHHHHHHcCCCCEEEEeccCChh-hhhcCcccccccCChHHHHHHHHHHhh---c
Q 023070 4 LPPEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQR-IARRGNYGAFLMDNLPLVKSLVEKLAL---N 74 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~-----~~~~~~aA~~~~~g~d~IdiN~gcP~~-~~~~~~~G~~l~~~~~~~~~iv~~v~~---~ 74 (287)
+++.-.++.|.++-|. ..++++-.+..-..+|...||..||++ -.|.-++-+.| .+++.+++.+--+ .
T Consensus 174 ~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L---~~ll~~v~~a~~~~~~~ 250 (398)
T KOG1436|consen 174 YPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDL---RKLLTKVVQARDKLPLG 250 (398)
T ss_pred CCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHH---HHHHHHHHHHHhccccC
Confidence 4455566888887654 345555555555678999999999994 33333221111 1222333333211 2
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC------------cCCCCcc----ccHHHHHHHHhhC--
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFR----ADWNAIKAVKNAL-- 136 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~------------~~~~~~~----~~~~~i~~i~~~~-- 136 (287)
...|+.+|+......++..+++..+.+..+|.++|.+-|.+- +.+-+|+ ...+.++.+...+
T Consensus 251 ~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g 330 (398)
T KOG1436|consen 251 KKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRG 330 (398)
T ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccC
Confidence 246999999887677788899999999999999997654321 1112222 2456777777765
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchhh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 182 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~~ 182 (287)
+||||++|||.|.+||.+.+. .||..|++++++ +..|-++.+|+.
T Consensus 331 ~IpiIG~GGV~SG~DA~Ekir-aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 331 KIPIIGCGGVSSGKDAYEKIR-AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred CCceEeecCccccHhHHHHHh-cCchHHHHHHHHhhcCchhHHHHHH
Confidence 699999999999999999998 699999999997 689999998864
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.3e-11 Score=104.53 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=116.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCC----hHHHHHHHHHH-hhccCCcEEEEe
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI 83 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~----~~~~~~iv~~v-~~~~~~pv~vKi 83 (287)
.++-+|++|.-- . .++.++++.|++-|-|| +...++ |+++.++++.. .+.+-+.+.+|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 356799999875 3 66666888999999986 455566 99999999988 444333344441
Q ss_pred cC--------CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 84 RV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 84 R~--------g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
.- ||. ..++.+++..+.+.|+..|.++...++++.. .+|++.++++.+.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~---G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRL---GIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCccc---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 12 453 2367888899999999999999998887654 389999999999999999999999999999
Q ss_pred HHHHHhc-CccEEEEehhh--hhCccch
Q 023070 153 QKCLEET-GCEGVLSAESL--LENPALF 177 (287)
Q Consensus 153 ~~~l~~~-gad~VmiGR~~--l~nP~lf 177 (287)
.++.+.+ |+.+|.+|+++ |.+-.=+
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~~y~g~~~l 250 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALDIFGGNLPY 250 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHHHhCCCccH
Confidence 9888754 78999999999 5554433
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=105.60 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=111.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec-C---
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V--- 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR-~--- 85 (287)
++-+|++|. .....++...++.|+|-|-+ |+...++|+++.++.+...+. +.+++..+ -
T Consensus 74 ~~~v~vgGG-Irs~e~~~~~l~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~--ivvslD~k~~g~~ 136 (243)
T TIGR01919 74 VVVEELSGG-RRDDSSLRAALTGGRARVNG--------------GTAALENPWWAAAVIRYGGDI--VAVGLDVLEDGEW 136 (243)
T ss_pred CCCEEEcCC-CCCHHHHHHHHHcCCCEEEE--------------CchhhCCHHHHHHHHHHcccc--EEEEEEEecCCce
Confidence 455677663 23333444455668887755 466678999999998887544 33444443 1
Q ss_pred ------CCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH--
Q 023070 86 ------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC-- 155 (287)
Q Consensus 86 ------g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~-- 155 (287)
||. ..+..++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||+|.+|+.++
T Consensus 137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~---G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~ 213 (243)
T TIGR01919 137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG---GPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKY 213 (243)
T ss_pred EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC---CcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHh
Confidence 343 2367899999999999999999988887655 389999999999999999999999999999977
Q ss_pred HHhcCccEEEEehhhhhCccchh
Q 023070 156 LEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+...|+++|++|++++.+--=+.
T Consensus 214 l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 214 LDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred hccCCeeEEEEhHHHHcCCCCHH
Confidence 43469999999999987764333
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=109.87 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+||.+++.+... +.+|+.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 478899999999999999999999865333 58999999999999999999999999999999999 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 ~l~~p~~~~ei~~ 118 (253)
T PRK02083 106 AVANPELISEAAD 118 (253)
T ss_pred HhhCcHHHHHHHH
Confidence 9999999998865
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=102.02 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=99.8
Q ss_pred CCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.++++.+++ +.+.+.++ ..+.|+|+|.+|.++|. ++++.+++ .++++.+++..
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~~ 111 (236)
T cd04730 53 DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVTS 111 (236)
T ss_pred CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCCC
Confidence 4688899999875 33444444 45669999999866332 22333332 35777776421
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.+.++.+.+.|+++|.++++.............++.++++++.+++||+++|||++++++.++++ .|+|+|+
T Consensus 112 -------~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~-~GadgV~ 183 (236)
T cd04730 112 -------VEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQ 183 (236)
T ss_pred -------HHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCcEEE
Confidence 24466777899999999887432211111124578999999888999999999999999999998 6999999
Q ss_pred EehhhhhCccc
Q 023070 166 SAESLLENPAL 176 (287)
Q Consensus 166 iGR~~l~nP~l 176 (287)
+|++++..+..
T Consensus 184 vgS~l~~~~e~ 194 (236)
T cd04730 184 MGTRFLATEES 194 (236)
T ss_pred EchhhhcCccc
Confidence 99999877653
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=107.62 Aligned_cols=144 Identities=24% Similarity=0.195 Sum_probs=106.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
.+.+.+..|.+++....+..++++|+|.|+||+.. | +++.+.++++.+++.. ++||.+ |.
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~ 142 (325)
T cd00381 82 RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN 142 (325)
T ss_pred CceEEEecCCChhHHHHHHHHHhcCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC
Confidence 34566777888888888888889999999998631 2 2356678888888765 355555 21
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc------CCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-.+.+.++.+.++|+|+|.|+.. ++.. .+.+.++|..+..+.+.. ++|||++|||.++.|+.+++.
T Consensus 143 --v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~--~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla- 217 (325)
T cd00381 143 --VVTAEAARDLIDAGADGVKVGIGPGSICTTRIV--TGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA- 217 (325)
T ss_pred --CCCHHHHHHHHhcCCCEEEECCCCCcCccccee--CCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-
Confidence 23456688888999999998632 2211 223456788777776654 699999999999999999998
Q ss_pred cCccEEEEehhhhhCccc
Q 023070 159 TGCEGVLSAESLLENPAL 176 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~l 176 (287)
.|||+||+|+.+..-..-
T Consensus 218 ~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 218 AGADAVMLGSLLAGTDES 235 (325)
T ss_pred cCCCEEEecchhcccccC
Confidence 799999999999875543
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=107.99 Aligned_cols=89 Identities=22% Similarity=0.382 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|++|.++..... .+.+++.++++++.+++||+++|||+|.+|+.++++ .|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~---~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEG---RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccccc---CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECch
Confidence 47889999999999999999999875432 257999999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 103 ~~~~p~~~~~i~~ 115 (243)
T cd04731 103 AVENPELIREIAK 115 (243)
T ss_pred hhhChHHHHHHHH
Confidence 9999999998754
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=101.32 Aligned_cols=139 Identities=13% Similarity=0.167 Sum_probs=109.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g 86 (287)
+|++| ....+.++.++++.|++-|-| |+...++|+++.++.+...+. +-+++-.+- |
T Consensus 79 i~vGG-GIrs~e~v~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~g 141 (234)
T PRK13587 79 IEVGG-GIRTKSQIMDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNG 141 (234)
T ss_pred EEEcC-CcCCHHHHHHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecC
Confidence 67755 334455555566778887755 467788999999999887433 445554443 3
Q ss_pred CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 87 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 87 ~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
|. ..+..++++.+++.|+..+.++...++++.. ..|++.++++.+.+++||++.|||+|++|+.++++ .|+++
T Consensus 142 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~ 217 (234)
T PRK13587 142 WEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMS---GPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHA 217 (234)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCC---ccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCE
Confidence 42 2356899999999999999999888876554 38899999999989999999999999999999997 69999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|.+|++++.
T Consensus 218 vivG~a~~~ 226 (234)
T PRK13587 218 AIIGKAAHQ 226 (234)
T ss_pred EEEhHHHHh
Confidence 999999986
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-10 Score=101.48 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=106.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g 86 (287)
+|++|. ...+.++.+.++.|++-|-| |+...++|+++.++ .+... .+.+++..+- |
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v~~~g 137 (241)
T PRK14114 76 IQIGGG-IRSLDYAEKLRKLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKVAFKG 137 (241)
T ss_pred EEEecC-CCCHHHHHHHHHCCCCEEEE--------------CchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEEeeCC
Confidence 566553 23334444455667777655 46677899999999 54432 2456665543 3
Q ss_pred CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc----
Q 023070 87 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET---- 159 (287)
Q Consensus 87 ~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~---- 159 (287)
|. ..++.++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+.++.+..
T Consensus 138 w~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~---G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred CeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCC---CcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccC
Confidence 42 2357899999999999999999888887654 3899999999999999999999999999999888741
Q ss_pred C-ccEEEEehhhhhCcc
Q 023070 160 G-CEGVLSAESLLENPA 175 (287)
Q Consensus 160 g-ad~VmiGR~~l~nP~ 175 (287)
| ++||.+|++++.+--
T Consensus 215 g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 215 GLLKGVIVGRAFLEGIL 231 (241)
T ss_pred CcEEEEEEehHHHCCCC
Confidence 5 999999999987653
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=102.41 Aligned_cols=145 Identities=24% Similarity=0.337 Sum_probs=108.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEec----
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR---- 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR---- 84 (287)
++-+|++|. ...+..+.++++.|++.|-|| +...++|+++.++.+.... .+-+.+.+|-.
T Consensus 73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 456788664 345556666777888877764 6677899999999998865 33333333432
Q ss_pred C-CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 85 V-FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 85 ~-g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. +|.. .+..++++.+.+.|+..+.++.-.++++.. .+|++.++++++..++|||++|||.+.+|+.++.+ .|
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G 213 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ---GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKK-AG 213 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHH-TT
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC---CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHH-CC
Confidence 0 3432 368899999999999999999988887655 37899999999888999999999999999999986 69
Q ss_pred ccEEEEehhhhhC
Q 023070 161 CEGVLSAESLLEN 173 (287)
Q Consensus 161 ad~VmiGR~~l~n 173 (287)
+++|++|++++.+
T Consensus 214 ~~gvivg~al~~g 226 (229)
T PF00977_consen 214 IDGVIVGSALHEG 226 (229)
T ss_dssp ECEEEESHHHHTT
T ss_pred CcEEEEehHhhCC
Confidence 9999999999864
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=105.90 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=110.7
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCcc-------------------cccc---cC
Q 023070 8 DRPLFVQFC-ANDPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNY-------------------GAFL---MD 59 (287)
Q Consensus 8 ~~p~~~Qi~-g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~-------------------G~~l---~~ 59 (287)
+.|+.+||. ..|.+...+..+.++ .|+++|-|+...|.. +.. +.++ +... ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 468899996 457777777777765 499999999888852 110 0000 0000 11
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---AL 136 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~ 136 (287)
++....+.++.+++.++.||.+| +. ...+.++.+.++|+++|+|.+....+.. ....-+..+..+++ .+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK---gv---~~~~dA~~a~~~G~d~I~vsnhgG~~~d--~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK---GV---QTVEDAVLAAEYGVDGIVLSNHGGRQLD--TAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE---cC---CCHHHHHHHHHcCCCEEEEECCCcccCC--CCCCHHHHHHHHHHHHHHh
Confidence 34456678899999899999999 22 2356678899999999999643211111 11233445555554 22
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++|||+.|||++..|+.++|. .|||+|+|||+++..+.
T Consensus 269 ~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 269 FDKIEVYVDGGVRRGTDVLKALC-LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 599999999999999999999 59999999999998664
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-10 Score=101.33 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=114.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
.+..|+..|+++.+|+.+.+.++ ..+.||+.|.||+|. +++...+.++++++.+ ++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 45678888999999999988776 556799999999762 2355567888888766 48899999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+|+.+++.++++.+++.|+.+| ++... +.+|+.++++++.+++||++++.+.+++++.++++.+++|.
T Consensus 185 n~~~~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 185 NQGWTPEEAVELLRELAELGVELI-------EQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEE-------ECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCE
Confidence 999999999999999999999888 22211 46889999999999999999999999999999999889999
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
|++-
T Consensus 255 v~~~ 258 (316)
T cd03319 255 INIK 258 (316)
T ss_pred EEEe
Confidence 9873
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-10 Score=103.37 Aligned_cols=89 Identities=20% Similarity=0.357 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+++..+..... ...+++.++++++.+++||+++|||+|.+|+.+++. .||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~---~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEG---RTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccc---ChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 47889999999999999999998876432 257999999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999998753
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=99.28 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=101.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCC--CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g--~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
++.+.+ |..++++.++..++++| .|.|-+-.. . .+.+.+.+.++.+++....|+.++=..
T Consensus 84 ~v~~Sv-G~t~e~~~r~~~lv~a~~~~d~i~~D~a--------h-------g~s~~~~~~i~~i~~~~p~~~vi~GnV-- 145 (321)
T TIGR01306 84 FASISV-GVKACEYEFVTQLAEEALTPEYITIDIA--------H-------GHSNSVINMIKHIKTHLPDSFVIAGNV-- 145 (321)
T ss_pred EEEEEc-CCCHHHHHHHHHHHhcCCCCCEEEEeCc--------c-------CchHHHHHHHHHHHHhCCCCEEEEecC--
Confidence 344554 67888899999888887 577665421 0 145778889999998876664444212
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe---ccCCCCc-CCCCccccH--HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH---GRTRDEK-DGKKFRADW--NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh---~rt~~~~-~~~~~~~~~--~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
.+.+.++.+.++|++.|.|+ |++...+ ....+..+| ..+.++++..++|||++|||++..|+.++|. .||
T Consensus 146 ---~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa-~GA 221 (321)
T TIGR01306 146 ---GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGA 221 (321)
T ss_pred ---CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHH-cCC
Confidence 25677899999999999997 4432111 111122334 5788888888999999999999999999999 599
Q ss_pred cEEEEehhhh
Q 023070 162 EGVLSAESLL 171 (287)
Q Consensus 162 d~VmiGR~~l 171 (287)
|+||+||.+-
T Consensus 222 d~Vmig~~~a 231 (321)
T TIGR01306 222 SMVMIGSLFA 231 (321)
T ss_pred CEEeechhhc
Confidence 9999998764
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=95.60 Aligned_cols=127 Identities=20% Similarity=0.315 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH--HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHc
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP--LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~--~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~ 102 (287)
++-.+.+.|+|.|-++... ..+|+ .+.++++.+++..++|+.+.+. +.+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHc
Confidence 4444556788888887421 11232 6778888777655688887642 22345778889
Q ss_pred CCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 103 GCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 103 G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|++++.+ +|++.... .....+++.++++++.+++||+++|||++++++.++++ .|||+|++|++++...+
T Consensus 143 G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 143 GFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred CCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEchHHhChHh
Confidence 9999965 45544322 12246789999999988999999999999999999999 58999999999765444
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=95.75 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=108.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC-----
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF----- 86 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g----- 86 (287)
-+|++|. ...+..+.+.++.|++-|-|| +...++ +++.++++...+. .+-+++-.+-+
T Consensus 80 ~v~vgGG-ir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~ 142 (233)
T cd04723 80 GLWVDGG-IRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKP 142 (233)
T ss_pred CEEEecC-cCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccc
Confidence 3666653 334555555666777777664 555677 9999999988541 34556655544
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+..+..++++.+++. ++.++++...+..+.. ..|++.++++.+.+++||+++|||+|.+|+.++++ .|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~---g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ---GPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC---CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 2345678899999999 9999998877765443 47899999999999999999999999999999998 59999999
Q ss_pred ehhhhhCc
Q 023070 167 AESLLENP 174 (287)
Q Consensus 167 GR~~l~nP 174 (287)
|++++.+-
T Consensus 218 Gsal~~g~ 225 (233)
T cd04723 218 ASALHDGG 225 (233)
T ss_pred ehHHHcCC
Confidence 99998763
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=99.48 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|+..+.... ..+.+++.++++++.+++||+++|||+|+++++++++ .|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 5788999999999999999998776421 1257899999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999998765
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-10 Score=92.51 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 101 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~ 101 (287)
.+.++-.+++.|+|.|-+-.- .-.||+.+.++++.+++.. ..+...+.. ++-+..+.+
T Consensus 53 T~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADist-------~ee~~~A~~ 110 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADIST-------LEEAINAAE 110 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE-SS-------HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeecCC-------HHHHHHHHH
Confidence 355566677889998888631 1246788999999999887 788877532 444677889
Q ss_pred cCCCEE--EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 102 AGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 102 ~G~~~I--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+|+|.| |+.|.|..... ..+|+++++++++. ++|||+-|+|+||+++.++|+ .||++|.+|. ++.+|++..
T Consensus 111 ~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~-~GA~aVVVGs-AITrP~~It 183 (192)
T PF04131_consen 111 LGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALE-LGAHAVVVGS-AITRPQEIT 183 (192)
T ss_dssp TT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHH-TT-SEEEE-H-HHH-HHHHH
T ss_pred cCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHh-cCCeEEEECc-ccCCHHHHH
Confidence 999999 45566665433 35899999999986 899999999999999999999 5999999995 557787543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=95.57 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHH-----HHHHHHhhccCCcEE--EEecCCCChh
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK-----SLVEKLALNLNVPVS--CKIRVFPNLQ 90 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~-----~iv~~v~~~~~~pv~--vKiR~g~~~~ 90 (287)
.+++++.++++.++.++|.||||+-||.+. .+ |..+.+.+..+. ++++++++.+++|+. +|+... ..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~--ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~--~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPK--YD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDY--VD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCC--CC--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchh--hh
Confidence 388999999997654599999999888763 22 556666667766 899999988889973 665541 34
Q ss_pred hHHHHHHHHHHcCCCEEEEecc-----------------------------CCCC----------------cCCCCc---
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGR-----------------------------TRDE----------------KDGKKF--- 122 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~r-----------------------------t~~~----------------~~~~~~--- 122 (287)
+..++++.+.++|++++++|.- |... .....+
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 5667778888888888888731 1000 000011
Q ss_pred ccc-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 123 RAD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 123 ~~~-~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+ .+.++++++.. +.||++.|||++++++.++++ .|||++.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 112 24677777776 589999999999999999888 59999999999874
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=94.74 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=103.2
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec-C------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V------ 85 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR-~------ 85 (287)
+|++|. ...+.++.++++.|++-|-| |+...++|+++.++.+..... .+-+++..| -
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~ 139 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIR 139 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEcc
Confidence 566552 12223334445567776655 467788999999999887322 244555553 1
Q ss_pred CCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
||. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++. ..|++++|||+|.+|+.++.+ .|+|+
T Consensus 140 gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~---G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~g 214 (232)
T PRK13586 140 GWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTK---GIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDY 214 (232)
T ss_pred CCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCc---CcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCE
Confidence 342 2256799999999999999999888887654 3889999998876 556999999999999998886 69999
Q ss_pred EEEehhhhhC
Q 023070 164 VLSAESLLEN 173 (287)
Q Consensus 164 VmiGR~~l~n 173 (287)
|.+|++++.+
T Consensus 215 vivg~Aly~g 224 (232)
T PRK13586 215 IIVGMAFYLG 224 (232)
T ss_pred EEEehhhhcC
Confidence 9999999854
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=99.80 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=108.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhc---Cccc----------------------------
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQR-IARR---GNYG---------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~---~~~G---------------------------- 54 (287)
+.|...||.-.+.+......+.++ +||++|=+..-+|.. +..+ .++-
T Consensus 115 ~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~ 194 (361)
T cd04736 115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM 194 (361)
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccc
Confidence 358999999988555555555554 599999888665552 1110 1110
Q ss_pred -------c----c-------c--cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCC
Q 023070 55 -------A----F-------L--MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR 114 (287)
Q Consensus 55 -------~----~-------l--~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~ 114 (287)
. . + .-++.+.-+.++.+++.++.|+.+| |. ...+-++.+.+.|+|+|.|++.-.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV---~~~eda~~a~~~G~d~I~VSnhGG 268 (361)
T cd04736 195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GI---VTAEDAKRCIELGADGVILSNHGG 268 (361)
T ss_pred ccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cC---CCHHHHHHHHHCCcCEEEECCCCc
Confidence 0 0 0 0123334467888888889999999 21 234557788899999999843222
Q ss_pred CCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 115 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+. ...++.++.+.++++.+++|||+.|||++..|+.++|. .|||+||+||+++.
T Consensus 269 rql--d~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~ 323 (361)
T cd04736 269 RQL--DDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALA-LGANAVLLGRATLY 323 (361)
T ss_pred CCC--cCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 121 11245678888998888999999999999999999999 69999999999874
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=94.44 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC-C----C---
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV-F----P--- 87 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~-g----~--- 87 (287)
|........+.+++..|+|-|.|| ++.+.+|+++.++-+....++ -+.|..|-+. | |
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 444455555667888999999999 445789999999988876554 3444555542 1 1
Q ss_pred -------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+.-+++++++.+++.|+..|.++...+++... .+|++.++.+++.+++|||++||..++++..+.+..+.
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~---GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ 222 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKA---GYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGK 222 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccccc---CcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcC
Confidence 22478999999999999999999887776554 48999999999999999999999999999999999888
Q ss_pred ccEEEEeh
Q 023070 161 CEGVLSAE 168 (287)
Q Consensus 161 ad~VmiGR 168 (287)
||++..+.
T Consensus 223 adAaLAAs 230 (256)
T COG0107 223 ADAALAAS 230 (256)
T ss_pred ccHHHhhh
Confidence 99887654
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=99.58 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=109.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---ccc--------------------cc----c
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NYG--------------------AF----L 57 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~G--------------------~~----l 57 (287)
+.|...|+.-. |.+...+..+.++ +||.+|=+..-+|.. +..++ ++. +. .
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 45899999874 4666666666664 599998888766662 11111 000 00 0
Q ss_pred --cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 58 --MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 58 --~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
.-++.+.-+-++.+++.++.||.+|-= -..+-++.+.++|+|+|.|.+....+ ...+++....+.++++.
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~~~PvivKgV------~~~~dA~~a~~~GvD~I~vsn~GGr~--~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSITNLPILIKGV------LTREDAIKAVEVGVAGIIVSNHGARQ--LDYSPATISVLEEVVQA 274 (364)
T ss_pred HhccCCCCCHHHHHHHHhccCCCEEEecC------CCHHHHHHHHhcCCCEEEEeCCCcCC--CCCChHHHHHHHHHHHH
Confidence 002334456678888888999999921 11244788889999999996432211 12224446778888776
Q ss_pred C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 136 L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 136 ~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+ ++|||+.|||++..|+.++|. .|||+|++||+++..+.
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHHHhhhh
Confidence 5 699999999999999999998 59999999999987655
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=93.22 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=86.2
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCCh--HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~--~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
.+.+.|+|.|-+.. |. ...| +.+.++++.+++..++++.+.+. + .+-++.+.+.|++
T Consensus 83 ~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d 141 (221)
T PRK01130 83 ALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFD 141 (221)
T ss_pred HHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCC
Confidence 34567888777642 11 1122 55677888877645677776532 2 2335678899999
Q ss_pred EEEEe--ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 106 LLAVH--GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 106 ~I~vh--~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.++ +.+.... .....+++.++++++.+++||++.|||++++++.++++ .|+|+|++|++++.
T Consensus 142 ~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~-~GadgV~iGsai~~ 207 (221)
T PRK01130 142 FIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALE-LGAHAVVVGGAITR 207 (221)
T ss_pred EEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEchHhcC
Confidence 99774 3332211 12246789999999999999999999999999999998 58999999998764
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-08 Score=90.02 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=45.1
Q ss_pred cccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 123 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++.++++++..++||+ +.|||.|++++..+++ .|||+|++|++++.
T Consensus 183 ~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 183 RVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 3678999999998899998 9999999999999998 69999999999884
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=93.54 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHc
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~ 102 (287)
|.++-.+.+.|+|.|| |-. -.+| +.+++..++...+.|+.+.++. ++-+.+..+.
T Consensus 77 ~~Ea~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st-------leEal~a~~~ 131 (283)
T cd04727 77 FVEAQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN-------LGEALRRISE 131 (283)
T ss_pred HHHHHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC-------HHHHHHHHHC
Confidence 6777667788999996 111 1234 5788888888778999988653 3346667789
Q ss_pred CCCEE--EEeccCCC------------------CcC--------CCCccccHHHHHHHHhhCCCcEE--EecCCCCHHHH
Q 023070 103 GCSLL--AVHGRTRD------------------EKD--------GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDV 152 (287)
Q Consensus 103 G~~~I--~vh~rt~~------------------~~~--------~~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da 152 (287)
|+|.| ++.|.|.. ..+ .....++|+.++++++..++||+ +.|||.+++++
T Consensus 132 Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena 211 (283)
T cd04727 132 GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADA 211 (283)
T ss_pred CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 99999 55455554 000 11124789999999999999997 99999999999
Q ss_pred HHHHHhcCccEEEEehhhhhC
Q 023070 153 QKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~n 173 (287)
.++++ .|||+|++|++++.-
T Consensus 212 ~~v~e-~GAdgVaVGSAI~~a 231 (283)
T cd04727 212 ALMMQ-LGADGVFVGSGIFKS 231 (283)
T ss_pred HHHHH-cCCCEEEEcHHhhcC
Confidence 99998 699999999999853
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=89.00 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=81.6
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecC------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~ 127 (287)
|+..+++|+++.++.. .+++-.+- +|. +...++.+.+.+.|+ .+.++.-.+.++.. .+|++
T Consensus 108 gT~a~~~p~~l~~~~~--------vvslD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~---G~d~e 174 (221)
T TIGR00734 108 ATETLDITELLRECYT--------VVSLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMK---GPNLE 174 (221)
T ss_pred cChhhCCHHHHHHhhh--------EEEEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCccccCC---CCCHH
Confidence 5666789998887651 23333321 443 356677888888998 78777766665433 47899
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 128 ~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.++++++.+++|||++|||+|++|+.++.+ .|+|+|++|++++.+
T Consensus 175 li~~i~~~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g 219 (221)
T TIGR00734 175 LLTKTLELSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCC
Confidence 999999999999999999999999998776 699999999998764
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=90.61 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=107.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCC----hHHHHHHHHHH-hhccCCcEEEEec
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKIR 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~----~~~~~~iv~~v-~~~~~~pv~vKiR 84 (287)
.+-+|++|.=- . ..+.+.++.|++.|-|| +.+.++ |+++.++.+.. .+.+-+.+.+|..
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 35678887653 3 56666788899999885 444444 88999998888 3443333344410
Q ss_pred -C--------CCCh---hhHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 85 -V--------FPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 85 -~--------g~~~---~~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
- ||.. .++. ++++.+++. +..|.++...++++.. .+|++.++++++.+++|||++||+.|.+|
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~---G~dlel~~~l~~~~~ipVIASGGv~s~eD 215 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCK---GIDEELVSKLGEWSPIPITYAGGAKSIDD 215 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccc---cCCHHHHHHHHhhCCCCEEEECCCCCHHH
Confidence 1 4532 2566 899999999 9999999999887655 38999999999999999999999999999
Q ss_pred HHHHHHh-cCccEEEEehhhhh
Q 023070 152 VQKCLEE-TGCEGVLSAESLLE 172 (287)
Q Consensus 152 a~~~l~~-~gad~VmiGR~~l~ 172 (287)
+.++.+. .|..++.+|++++.
T Consensus 216 i~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 216 LDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHhcCCCCcEEeeehHHH
Confidence 9988432 36777999999864
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-08 Score=98.59 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=109.8
Q ss_pred EEEEecCC--CHHH--------HHHHHHHHcCCCCEEEEecc---CChhhhhcCcccccccCChHHHHHHHHHHhhccCC
Q 023070 11 LFVQFCAN--DPEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 77 (287)
Q Consensus 11 ~~~Qi~g~--~~~~--------~~~aA~~~~~g~d~IdiN~g---cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 77 (287)
+=+|++|. +.++ +..+.++++.|+|-|-||-. .|-. -|-+.-..+|+++.++.+...+.+ +
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~-i 388 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQA-V 388 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCce-E
Confidence 34688775 3333 46666788899999999831 1210 112223467899999999885431 2
Q ss_pred cEEEEecC----------------------------------CC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC
Q 023070 78 PVSCKIRV----------------------------------FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 120 (287)
Q Consensus 78 pv~vKiR~----------------------------------g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~ 120 (287)
-|++..+- || +..+++++++.+++.|+..|.++...++++..
T Consensus 389 vvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~- 467 (538)
T PLN02617 389 VVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGK- 467 (538)
T ss_pred EEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccccc-
Confidence 22222211 22 23477899999999999999999888887654
Q ss_pred CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 121 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 121 ~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
..|++.++.+++.+++|||++||+.+++|+.++++.+++|+++.|.
T Consensus 468 --G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 468 --GFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred --CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 4899999999999999999999999999999999988999999884
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=93.78 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=104.8
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---ccc---------------------------
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NYG--------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~G--------------------------- 54 (287)
+.|...||.-. |.+...+..+.++ .||.+|=|..-.|.. +..++ ++.
T Consensus 137 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE 216 (383)
T ss_pred CCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCC
Confidence 35889998776 5666666666554 599988887444431 11100 000
Q ss_pred ------------cccc---CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC
Q 023070 55 ------------AFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119 (287)
Q Consensus 55 ------------~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~ 119 (287)
+..+ -++.+.-+-++.+++.++.||.+| |. ...+-++.+.+.|+|+|+|.+....+ .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV---~~~~dA~~a~~~G~d~I~vsnhGGr~--~ 288 (383)
T cd03332 217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GI---LHPDDARRAVEAGVDGVVVSNHGGRQ--V 288 (383)
T ss_pred CcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cC---CCHHHHHHHHHCCCCEEEEcCCCCcC--C
Confidence 0000 123333466778888889999999 22 22355778889999999995322111 1
Q ss_pred CCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 120 KKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+++..+.+.++++.+ ++||++.|||++..|+.++|. .|||+|++||+++
T Consensus 289 d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~l 341 (383)
T cd03332 289 DGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALA-LGAKAVLIGRPYA 341 (383)
T ss_pred CCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHH
Confidence 22345577888888776 599999999999999999998 5999999999998
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-08 Score=82.30 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=108.4
Q ss_pred CCCEEEEecCCC----HHHHHHHHHH-HcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCc
Q 023070 8 DRPLFVQFCAND----PEILLNAARR-VEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVP 78 (287)
Q Consensus 8 ~~p~~~Qi~g~~----~~~~~~aA~~-~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~p 78 (287)
..|+++++..++ .++..+.++. .+.|+|+|.+. ++++. ..+++.+.+.++++.+.+ ++|
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~p 115 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK------------EGDWEEVLEEIAAVVEAADGGLP 115 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh------------CCCHHHHHHHHHHHHHHhcCCce
Confidence 578999999988 7777777774 55699999984 32221 115788888888888874 899
Q ss_pred EEEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 023070 79 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 79 v~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~ 154 (287)
+.++...+.. .+...++++.+.+.|++.|..+..... +..+++.++++++.. ++||++.||+.+++.+..
T Consensus 116 v~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~ 189 (201)
T cd00945 116 LKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALA 189 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHH
Confidence 9999987543 455667777788899999987643221 235788888888876 679999999999999999
Q ss_pred HHHhcCccEEEEe
Q 023070 155 CLEETGCEGVLSA 167 (287)
Q Consensus 155 ~l~~~gad~VmiG 167 (287)
++.. ||+++++|
T Consensus 190 ~~~~-Ga~g~~~g 201 (201)
T cd00945 190 AIEA-GADGIGTS 201 (201)
T ss_pred HHHh-ccceeecC
Confidence 9984 99999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=91.99 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=106.3
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCccc---------------------------
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNYG--------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~G--------------------------- 54 (287)
+.|...|+.-. |.+...+-.+.++ +|+.+|=+..-+|.. +.. +.++.
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 34789999754 5555555555554 599998888666663 111 11110
Q ss_pred ccc--cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 55 AFL--MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 55 ~~l--~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
..+ .-++.+.-+-++.+++..+.||.+|- . ...+-|+.+.++|+|+|.|.+.-..+. ...++..+.+.++
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKg---V---~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei 271 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKG---V---LTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEV 271 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeec---C---CCHHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHH
Confidence 000 01233334668888888999999993 1 124567889999999999964432222 2224456777777
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 133 KNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 133 ~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+ ++||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 272 ~~~~~~~~~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 272 VKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred HHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 7765 599999999999999999998 59999999998873
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-08 Score=92.71 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|-.++.+.++..++++|+|.|-|-..- .+.+.+.++++.+++.. +.+|.++. -.+.+-
T Consensus 149 g~~~~~~~~v~~lv~aGvDvI~iD~a~---------------g~~~~~~~~v~~ik~~~p~~~vi~g~------V~T~e~ 207 (404)
T PRK06843 149 SIDIDTIERVEELVKAHVDILVIDSAH---------------GHSTRIIELVKKIKTKYPNLDLIAGN------IVTKEA 207 (404)
T ss_pred eCCHHHHHHHHHHHhcCCCEEEEECCC---------------CCChhHHHHHHHHHhhCCCCcEEEEe------cCCHHH
Confidence 557888888888999999998885421 23567888899998876 67787762 233566
Q ss_pred HHHHHHcCCCEEEEeccCCCC----c-CCCCccccHHHHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 96 AKMLEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~----~-~~~~~~~~~~~i~~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+.++|+|+|.| |.+... + ....+.+++..+.. +.+..++|||+.|||+++.|+.++|. .|||+||+|
T Consensus 208 a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmvG 285 (404)
T PRK06843 208 ALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMIG 285 (404)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEc
Confidence 78888999999987 332211 0 01112355665544 44456899999999999999999999 699999999
Q ss_pred hhhhhCc
Q 023070 168 ESLLENP 174 (287)
Q Consensus 168 R~~l~nP 174 (287)
+.+..-.
T Consensus 286 s~~agt~ 292 (404)
T PRK06843 286 NLFAGTK 292 (404)
T ss_pred ceeeeee
Confidence 9987633
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-08 Score=92.04 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=72.5
Q ss_pred HHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecC
Q 023070 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN 145 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGg 145 (287)
++.+++.++.||.+|= . -..+-++.+.+.|+++|.|.+.-..+... .....+.+.++.+.+ ++||++.||
T Consensus 237 i~~lr~~~~~pvivKg-----V-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~~i~~a~~~~~~vi~dGG 308 (381)
T PRK11197 237 LEWIRDFWDGPMVIKG-----I-LDPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALPAIADAVKGDITILADSG 308 (381)
T ss_pred HHHHHHhCCCCEEEEe-----c-CCHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHHHHHHHhcCCCeEEeeCC
Confidence 7778888899999992 1 23455778889999999995321111111 134456677776655 699999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|++..|+.++|. .|||+|++||.++.
T Consensus 309 Ir~g~Di~KALa-LGA~~V~iGr~~l~ 334 (381)
T PRK11197 309 IRNGLDVVRMIA-LGADTVLLGRAFVY 334 (381)
T ss_pred cCcHHHHHHHHH-cCcCceeEhHHHHH
Confidence 999999999998 59999999999873
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.9e-09 Score=91.04 Aligned_cols=89 Identities=22% Similarity=0.358 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+++......... ..+++.++++.+.+++||+++|||+|.+++.++++ .|++.|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~---~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR---EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 378999999999999999999887764322 57899999999999999999999999999999887 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988764
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.2e-08 Score=84.09 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=96.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|++++=++.++. ++....+.|+|+|-+.. .. + .++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~-------------~~-~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIV-------------AA-L-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEee-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 56777654446664 23334567999988752 11 1 23666777776533 3555444442
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++ ++.+.+.|++++.+|+++.... ..+++.+.++++. .++||++.|||.+++++.++++ .|+|+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~-~Ga~gvi 199 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAE-AGADAVL 199 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHH-cCCCEEE
Confidence 2222 5667789999999997764321 4667888999887 4699999999999999999998 5999999
Q ss_pred EehhhhhCccchh
Q 023070 166 SAESLLENPALFA 178 (287)
Q Consensus 166 iGR~~l~nP~lf~ 178 (287)
+|++++..++...
T Consensus 200 vGsai~~~~~p~~ 212 (217)
T cd00331 200 IGESLMRAPDPGA 212 (217)
T ss_pred ECHHHcCCCCHHH
Confidence 9999998776443
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=94.02 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=101.6
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhc----Ccccc---------------------------
Q 023070 9 RPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQRIARR----GNYGA--------------------------- 55 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~----~~~G~--------------------------- 55 (287)
.|..+||.- .+.+...+..+.++ .|+++|-++.-+|+...|. .++.-
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 678999955 46677666777665 5999988875544421110 11100
Q ss_pred ------------cc---cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEe--ccCCCCcC
Q 023070 56 ------------FL---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKD 118 (287)
Q Consensus 56 ------------~l---~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh--~rt~~~~~ 118 (287)
.+ .-++.+.-+-++.+++.++.||.||== -..+-++.+.+.|+++|.|. |.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv------~~~~da~~~~~~G~~~i~vs~hGGr~~--- 260 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV------LSPEDAKRAVDAGVDGIDVSNHGGRQL--- 260 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSS---
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec------ccHHHHHHHHhcCCCEEEecCCCcccC---
Confidence 00 013444456688888999999999932 22345788899999999995 44432
Q ss_pred CCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 119 GKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+++-.+.+.++++.+ ++||++.|||++..|+.+++. .|||+|.+||+++.
T Consensus 261 -d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 261 -DWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp -TTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred -ccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 22355667788888765 599999999999999999999 59999999998863
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=90.13 Aligned_cols=90 Identities=21% Similarity=0.364 Sum_probs=79.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+++++|++..+.|+|.++.-..|.+.... ...+++++++.+.+.+|+.+.|||+|.+|+.++|. .|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~gr---~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEGR---ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccccccc---hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeC
Confidence 45588999999999999999998777654222 47789999999999999999999999999999998 599999999
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
++++.||.|.+++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999998775
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=95.16 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=102.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.+.++-=-.|-.++.+.++..++++|+|.|-|.. +. .+...+.+.++.+++.. +.+|.++
T Consensus 235 ~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~--~~-------------g~~~~~~~~i~~ik~~~p~~~vi~g---- 295 (505)
T PLN02274 235 GKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDS--SQ-------------GDSIYQLEMIKYIKKTYPELDVIGG---- 295 (505)
T ss_pred CCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeC--CC-------------CCcHHHHHHHHHHHHhCCCCcEEEe----
Confidence 3434433356678889999999999999988864 21 24456678889998876 6788776
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEe--cc----CCCCc-CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh--~r----t~~~~-~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+ -.+.+-++.+.++|+|.|.|. +. |+... .+.+....+..+.++.+..++|||+.|||+++.|+.++|. .
T Consensus 296 -~-v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla-~ 372 (505)
T PLN02274 296 -N-VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT-L 372 (505)
T ss_pred -c-CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-c
Confidence 2 123455788889999999773 22 21100 1112223556677888778999999999999999999999 5
Q ss_pred CccEEEEehhhhh
Q 023070 160 GCEGVLSAESLLE 172 (287)
Q Consensus 160 gad~VmiGR~~l~ 172 (287)
|||+||+|+.+..
T Consensus 373 GA~~V~vGs~~~~ 385 (505)
T PLN02274 373 GASTVMMGSFLAG 385 (505)
T ss_pred CCCEEEEchhhcc
Confidence 9999999998864
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=91.78 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=105.5
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCccc--------c---------------cc-
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNYG--------A---------------FL- 57 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~G--------~---------------~l- 57 (287)
+.|...|+.-. |.+...+..+.++ +||.+|=|..-+|.. +.. +.++- . .+
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 200 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence 35789999864 5555555555554 599998887666653 111 11110 0 00
Q ss_pred -----cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 58 -----MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 58 -----~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.-++.+.-+-++.+++..+.||.+|= . ...+-++.+.++|++.|.|.+.-..+. ...++..+.+.++
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKg---V---~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~~~t~~~L~ei 272 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKG---V---LTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEV 272 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeec---C---CCHHHHHHHHHcCCCEEEECCCCCCCC--CCchhHHHHHHHH
Confidence 01222333557788888899999992 1 134667889999999999964432222 2224456777778
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 133 KNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 133 ~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+ ++||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 273 ~~av~~~~~vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 273 VKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred HHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 7765 599999999999999999998 59999999998874
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.3e-08 Score=94.31 Aligned_cols=142 Identities=23% Similarity=0.222 Sum_probs=97.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+.++-=..|..++.+.++..++++|+|.|.|+.. . .+.....+.++.+++.. +++|.++
T Consensus 229 rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a--------~-------G~s~~~~~~i~~ik~~~~~~~v~aG----- 288 (495)
T PTZ00314 229 QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS--------Q-------GNSIYQIDMIKKLKSNYPHVDIIAG----- 288 (495)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC--------C-------CCchHHHHHHHHHHhhCCCceEEEC-----
Confidence 4344345567788888888889999999999963 1 13444567888888775 6777774
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe--cc-CCCCc-CCCCccccHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh--~r-t~~~~-~~~~~~~~~~~i~~i~---~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+ -.+.+-++.+.++|+|+|.|. +. +.... ....+.+++..+..+. +..++|||+.|||+++.|+.+++. .|
T Consensus 289 ~-V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla-~G 366 (495)
T PTZ00314 289 N-VVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALA-LG 366 (495)
T ss_pred C-cCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH-cC
Confidence 1 122455777889999999872 11 11110 1112234555544444 445899999999999999999998 69
Q ss_pred ccEEEEehhhhh
Q 023070 161 CEGVLSAESLLE 172 (287)
Q Consensus 161 ad~VmiGR~~l~ 172 (287)
||+||+|+.+..
T Consensus 367 A~~Vm~G~~~a~ 378 (495)
T PTZ00314 367 ADCVMLGSLLAG 378 (495)
T ss_pred CCEEEECchhcc
Confidence 999999998654
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=83.51 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
.+.++..+.|++..+ +-|.|.|-. +.| -.|+.|+....+-.+.+.+. ++-+.--+ .+...
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc------~dd~~ 135 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYC------TDDPV 135 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEe------CCCHH
Confidence 578888888887654 457776652 222 24666666655555554321 22222111 12346
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++++.|++.|..+|...... .+..+.+.|+.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 136 ~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~ 209 (248)
T cd04728 136 LAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAK 209 (248)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcC
Confidence 79999999999996665554422 2356789999999988999999999999999999999 69999999999873
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=83.04 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=109.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+...+++.+.+.++ ..+.||..+.+++| .+++.-.++++++++.+ ++++.+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3457777777778888887776 56679999999875 13466678888888876 57888888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+++|.- ... +.+++..+++++.+++||.+.+.+.++.++.++++...+|.
T Consensus 137 n~~~~~~~a~~~~~~l~~~~i~~iEe-------P~~---~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~ 206 (265)
T cd03315 137 NRGWTPKQAIRALRALEDLGLDYVEQ-------PLP---ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADA 206 (265)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEC-------CCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCE
Confidence 88899999999999999999988832 111 35788899999999999999999999999999998888999
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 207 v~~ 209 (265)
T cd03315 207 VNI 209 (265)
T ss_pred EEE
Confidence 987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=91.57 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=100.9
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCCCChhhHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~ 93 (287)
-.+-.++.+.++..+++.|+|.|.|+..- | +...+.+.++.+++. .++||.++- -.+.
T Consensus 218 av~~~~~~~~r~~~L~~aG~d~I~vd~a~----------g-----~~~~~~~~i~~i~~~~~~~~vi~G~------v~t~ 276 (450)
T TIGR01302 218 AVGTREFDKERAEALVKAGVDVIVIDSSH----------G-----HSIYVIDSIKEIKKTYPDLDIIAGN------VATA 276 (450)
T ss_pred EecCchhHHHHHHHHHHhCCCEEEEECCC----------C-----cHhHHHHHHHHHHHhCCCCCEEEEe------CCCH
Confidence 34556788999998999999999998531 1 234677888888887 489999862 1234
Q ss_pred HHHHHHHHcCCCEEEEe--cc-CCCCc-CCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh--~r-t~~~~-~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+-++.+.++|+|+|.|. +. +...+ ....+.+.+..+.++.+ ..++|||+.|||+++.|+.++|. .|||.||+
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla-~GA~~V~~ 355 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALA-AGADAVML 355 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 55777889999999764 21 11111 11122345566665544 35899999999999999999999 59999999
Q ss_pred ehhhhhCccchh
Q 023070 167 AESLLENPALFA 178 (287)
Q Consensus 167 GR~~l~nP~lf~ 178 (287)
|+.+..-.+-..
T Consensus 356 G~~~a~~~e~pg 367 (450)
T TIGR01302 356 GSLLAGTTESPG 367 (450)
T ss_pred CchhhcCCcCCC
Confidence 998766555443
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=88.01 Aligned_cols=89 Identities=27% Similarity=0.421 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.++++....... + ...+++.++++++.+++||++.|||+|.+|+.++++ .|||.|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 4788999999999999999987643211 1 147899999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999998887654
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-08 Score=91.66 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhccC-CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC------CCCccccHHHHHHH
Q 023070 60 NLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKAV 132 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~-~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~------~~~~~~~~~~i~~i 132 (287)
+++.+.++++.+++..+ +||.+|.-.+. ...++++.++..|+|+|+|.|....+.. ...+.+....+..+
T Consensus 197 ~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 197 SIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 45668999999999887 99999986643 3346777788888999999765322110 01112222334444
Q ss_pred Hhh-------CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 133 KNA-------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 133 ~~~-------~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+. .++||+++|||+|..|+.+++. .|||+|.+||+++.--
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kala-LGAd~V~ig~~~l~al 321 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALA-LGADAVGIGTAALIAL 321 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH-cCCCeeeechHHHHhc
Confidence 332 2699999999999999999999 5999999999998543
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=87.99 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=113.2
Q ss_pred CCCCEEEEecCC--CHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEE
Q 023070 7 EDRPLFVQFCAN--DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~v 81 (287)
...|+...+.+. +++++.++++. .+.||+.|.|+.|.+.. +.++++...++++++++.+ ++++.+
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 345666666555 59999888874 56799999999874321 1167888899999999887 578999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
..+-+|+.++++++++.+++.|+.+|- +.. . +.+++..+.+++.+++||++.+.+.+++++.++++...+
T Consensus 195 DaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~--~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 195 DANGRWDLAEAIRLARALEEYDLFWFE-------EPV-P--PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred ECCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-C--ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 988899999999999999998887763 111 1 247888999999999999999999999999999998789
Q ss_pred cEEEEe
Q 023070 162 EGVLSA 167 (287)
Q Consensus 162 d~VmiG 167 (287)
|.|.+-
T Consensus 265 d~v~~k 270 (357)
T cd03316 265 DIIQPD 270 (357)
T ss_pred CEEecC
Confidence 998773
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5e-08 Score=86.35 Aligned_cols=89 Identities=27% Similarity=0.404 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++++.+.+.|++.+++-..+.... . ...+++.++++.+..++|++++|||+|.++++.+++ .|||.|++|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~-~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~-~Ga~~v~iGs~ 107 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFE-G--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLD-LGVDRVILGTA 107 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhc-C--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 4788999999999999986654432211 1 146789999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+++.++..
T Consensus 108 ~~~~~~~~~~i~~ 120 (241)
T PRK13585 108 AVENPEIVRELSE 120 (241)
T ss_pred HhhChHHHHHHHH
Confidence 9999999988764
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6e-07 Score=77.39 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+.++.+.+.|+|++.++...............|+.++++++.+++||++.||| +++++.++++ .|+|+|++|++++..
T Consensus 106 e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 106 EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcC
Confidence 34667889999999765333222111112357899999998889999999999 8999999998 699999999999854
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
++
T Consensus 184 ~~ 185 (201)
T PRK07695 184 AN 185 (201)
T ss_pred CC
Confidence 33
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=82.38 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=101.9
Q ss_pred CEEEEecCC--CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cCCc
Q 023070 10 PLFVQFCAN--DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~~p 78 (287)
-++.=|... |.+...++++. .+.|+|.|||- |.-|. +..++- +--+|. -+.+.+.++++++++. .++|
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a-~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAA-DLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 466555544 66778888874 56799999997 34444 112111 111111 2567788999999876 6788
Q ss_pred EEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEecc--------------------------CC-----------C---
Q 023070 79 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR--------------------------TR-----------D--- 115 (287)
Q Consensus 79 v~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~-----------~--- 115 (287)
+..= ...+. -...++++.+.++|++.+++|.- |. .
T Consensus 90 lv~m--~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 90 IGLL--TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV 167 (256)
T ss_pred EEEE--EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE
Confidence 6421 11111 12245677777777777777531 10 0
Q ss_pred ---CcCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 116 ---EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 116 ---~~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
...+.+| +...+.++++++.++.||++.|||+|++++.++.+ .|||+|.+|++++
T Consensus 168 y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~-~GADgvVvGSaiv 231 (256)
T TIGR00262 168 YLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAID-AGADGVIVGSAIV 231 (256)
T ss_pred EEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 0011122 12367888999888999999999999999999888 5999999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-07 Score=82.36 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=92.7
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC----
Q 023070 13 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 86 (287)
Q Consensus 13 ~Qi~g--~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g---- 86 (287)
+|+.| ++.+++.+ +.+.|++.+-+ |++.. +|+++.++.+... ++-+++..|-|
T Consensus 76 v~~gGGIrs~edv~~---l~~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~ 134 (228)
T PRK04128 76 VQVGGGLRTYESIKD---AYEIGVENVII--------------GTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAV 134 (228)
T ss_pred EEEcCCCCCHHHHHH---HHHCCCCEEEE--------------Cchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEec
Confidence 45544 34454443 34457777755 35555 8999999988773 25566665543
Q ss_pred --CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 87 --PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 87 --~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
|. .....++++.+++. +..|.++...++++..+ +| +..+. ..++|||++|||+|.+|+.++.+ .|+
T Consensus 135 ~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G---~d-~l~~~---~~~~pviasGGv~~~~Dl~~l~~-~g~ 205 (228)
T PRK04128 135 KGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTG---IE-EIERF---WGDEEFIYAGGVSSAEDVKKLAE-IGF 205 (228)
T ss_pred CCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccC---HH-HHHHh---cCCCCEEEECCCCCHHHHHHHHH-CCC
Confidence 32 23567888889888 99999998888876543 33 22221 25899999999999999999987 699
Q ss_pred cEEEEehhhhhCc
Q 023070 162 EGVLSAESLLENP 174 (287)
Q Consensus 162 d~VmiGR~~l~nP 174 (287)
++|.+|++++..-
T Consensus 206 ~gvivg~al~~g~ 218 (228)
T PRK04128 206 SGVIIGKALYEGR 218 (228)
T ss_pred CEEEEEhhhhcCC
Confidence 9999999997653
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-07 Score=79.27 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
.+.++..+.|++..+ +-+.|.|-. +-| -.++.|+....+-.+.+.+. ++-|.--+ .+...
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~llpd~~~tv~aa~~L~~~-Gf~vlpyc------~~d~~ 135 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFVVLPYC------TDDPV 135 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCC----------CCCCcCHHHHHHHHHHHHHC-CCEEEEEe------CCCHH
Confidence 578888888887654 457766652 222 23455555555544444221 22222111 12356
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++++.|++.|-.+|...... .+..+.+.++.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 136 ~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItk 209 (250)
T PRK00208 136 LAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhC
Confidence 79999999999996655544322 2345788899999988999999999999999999999 69999999999874
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-07 Score=81.22 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=102.6
Q ss_pred CEEEEecCC--CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcE
Q 023070 10 PLFVQFCAN--DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPV 79 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv 79 (287)
-++.=|... +.+...+.++ +.+.|+|.|||- |.-|. +..++- +--+|. -+.+.+.++++++++..++|+
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEA-SNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 466555554 5677888777 456799999997 45555 122211 112222 256778899999987778886
Q ss_pred EEEecCCCCh--h-hHHHHHHHHHHcCCCEEEEecc--------------------------CCC----------C----
Q 023070 80 SCKIRVFPNL--Q-DTIKYAKMLEDAGCSLLAVHGR--------------------------TRD----------E---- 116 (287)
Q Consensus 80 ~vKiR~g~~~--~-~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~----------~---- 116 (287)
. +-..++. . ...+|++.+.++|++.+++|.- |.. .
T Consensus 95 v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 95 V--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred E--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 4 2222221 1 2345677777777777777531 100 0
Q ss_pred ---cCCCCcc-----cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 117 ---KDGKKFR-----AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 117 ---~~~~~~~-----~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+.+|. .+ -+.++++++.++.||...+||++++++.++.+ .|||||.+|.+++.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~-~GADGvVVGSalv~ 236 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKG-WNINGIVIGSACVQ 236 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 0111111 11 25677888888999999999999999999887 59999999999964
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-08 Score=85.21 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.++|+.+.+.|++.|++-.-.... + ...+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+.|.+|.++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchH
Confidence 78899999999999999997655432 1 247889999999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+.||.++.++..
T Consensus 108 l~~p~l~~~i~~ 119 (241)
T PRK14024 108 LENPEWCARVIA 119 (241)
T ss_pred hCCHHHHHHHHH
Confidence 999999988754
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.8e-07 Score=82.98 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+.++.+.+.|+|.|++.|....+..+.....-+.++.++++.+++|||+.|||.|.+++..+|. .|||||++|+.++.
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESHHHHT
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCCeEEe
Confidence 45678889999999999877554332211112467888999999999999999999999999998 69999999999987
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
-+.
T Consensus 225 t~E 227 (330)
T PF03060_consen 225 TEE 227 (330)
T ss_dssp STT
T ss_pred ccc
Confidence 655
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-07 Score=80.49 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCccccccc----------CChHHHHHHHHHHhhccCCcEEE--EecC
Q 023070 19 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLM----------DNLPLVKSLVEKLALNLNVPVSC--KIRV 85 (287)
Q Consensus 19 ~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~----------~~~~~~~~iv~~v~~~~~~pv~v--KiR~ 85 (287)
+.+.+.+.++.++ .|+|.|+|++ |.+.-.-| |-... -+.+...++++.+++..++|+.+ +...
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGI--PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 5578899888655 5899999995 44222222 11111 13457889999999877888654 5332
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEec--------------------------cCCC-----------C------cCCCCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------RTRD-----------E------KDGKKF 122 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~--------------------------rt~~-----------~------~~~~~~ 122 (287)
-.. .....+++.+.++|++.++++. -|.. + ..+..|
T Consensus 88 ~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG 166 (242)
T cd04724 88 ILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTG 166 (242)
T ss_pred HHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCC
Confidence 110 0124566667777777777621 0100 0 001111
Q ss_pred ------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 ------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
....+.++++++..++||++.|||++.+++.++.+ . ||+|.+|++++
T Consensus 167 ~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~-~-ADgvVvGSaiv 219 (242)
T cd04724 167 ARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAK-Y-ADGVIVGSALV 219 (242)
T ss_pred CccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHc-c-CCEEEECHHHH
Confidence 11246788888888999999999999999999887 4 99999998876
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=85.27 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+.+.|++.|++..-.+..... ..+++.++++.+.+++||++.|||+|.+|+.+++. .|++.|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~---~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGS---EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCC---cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChH
Confidence 478999999999999999998766553322 47899999999999999999999999999999997 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988754
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.3e-07 Score=79.05 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=94.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcEEEEecCCCCh-
Q 023070 19 DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSCKIRVFPNL- 89 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~- 89 (287)
|.+...+.++ +.+.|+|.|||- |.-|. +..++. .--+|. -+.+.+.++++.+++..++|+.+= ..++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm--~Y~N~i 90 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAA-ATRALEKGTTLDSVISMLKEVAPQLSCPIVLF--TYYNPI 90 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE--ecccHH
Confidence 6778888888 456799999997 44554 122211 111222 256778899999987778886422 21111
Q ss_pred -h-hHHHHHHHHHHcCCCEEEE-------------------------e-ccCCCC-----------------cCCCCc--
Q 023070 90 -Q-DTIKYAKMLEDAGCSLLAV-------------------------H-GRTRDE-----------------KDGKKF-- 122 (287)
Q Consensus 90 -~-~~~~~a~~l~~~G~~~I~v-------------------------h-~rt~~~-----------------~~~~~~-- 122 (287)
. ...+|++.+.++|++.+.+ - +-|... ..+-+|
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 0 2234555555555555555 1 111110 011111
Q ss_pred ---cccH-HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 ---RADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ---~~~~-~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+. +.++.+++.+++||+..-||++++++.++++ .|||||.+|++++
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~-~GADGvIVGSalV 222 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAG-WGADGVIVGSAMV 222 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 2233 4588899888999999999999999999887 5999999999987
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.5e-08 Score=84.12 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.++++.+.+. ++.+++-.+..... + .+.+++.++++.+.+++||++.|||+|.+|++++++ .|+|+|.+|+++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~-g--~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFE-G--KPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhc-C--CcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchh
Confidence 788999999998 99998865543211 1 147899999999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+ ||.+++++..
T Consensus 106 ~-~~~~l~~~~~ 116 (228)
T PRK04128 106 F-DLEFLEKVTS 116 (228)
T ss_pred c-CHHHHHHHHH
Confidence 9 9999988753
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=83.88 Aligned_cols=89 Identities=6% Similarity=0.138 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++.+.|+.+.+ .|++.++|-.-...... .+.+++.|+++.+.+++||.+.|||+|.+++++++. .||+-|.+|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~---~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~-~Ga~kvvigt 106 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQ---HAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFA-AGINYCIVGT 106 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccC---CcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHH-CCCCEEEECc
Confidence 367789999999 79999999755443211 147899999999999999999999999999999998 6999999999
Q ss_pred hhhhCccchhchhh
Q 023070 169 SLLENPALFAGFRT 182 (287)
Q Consensus 169 ~~l~nP~lf~~~~~ 182 (287)
.++.||.+++++..
T Consensus 107 ~a~~~~~~l~~~~~ 120 (234)
T PRK13587 107 KGIQDTDWLKEMAH 120 (234)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999999998864
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-07 Score=87.39 Aligned_cols=140 Identities=20% Similarity=0.178 Sum_probs=96.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
.+-...+-+|+.+..+..+++.|+|.|-++. +. .+...+.+.++.+++.. +.||.++-
T Consensus 218 ~V~aai~~~~~~~e~a~~L~~agvdvivvD~--a~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~------ 276 (486)
T PRK05567 218 RVGAAVGVGADNEERAEALVEAGVDVLVVDT--AH-------------GHSEGVLDRVREIKAKYPDVQIIAGN------ 276 (486)
T ss_pred EEEeecccCcchHHHHHHHHHhCCCEEEEEC--CC-------------CcchhHHHHHHHHHhhCCCCCEEEec------
Confidence 4445556566777777678888999875542 11 12345677888888876 88998862
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCC---Cc-CCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRD---EK-DGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~---~~-~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
-.+.+-++.+.++|+++|.|-..... .+ ....+.+++..+.++++. .++|||+.|||+++.|+.++|. .|||
T Consensus 277 v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla-~GA~ 355 (486)
T PRK05567 277 VATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA-AGAS 355 (486)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH-hCCC
Confidence 22344567788999999987321100 00 112234677778777664 4799999999999999999999 5999
Q ss_pred EEEEehhhhh
Q 023070 163 GVLSAESLLE 172 (287)
Q Consensus 163 ~VmiGR~~l~ 172 (287)
.||+|+.+-.
T Consensus 356 ~v~~G~~~a~ 365 (486)
T PRK05567 356 AVMLGSMLAG 365 (486)
T ss_pred EEEECccccc
Confidence 9999987643
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-07 Score=88.38 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+..+-.+.|-.++....+..++++|+|.|-|-... .+++.+.++++.+++.. ++||.+.
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~---------------g~~~~~~~~i~~i~~~~~~~~vi~g----- 272 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAH---------------GHQVKMISAIKAVRALDLGVPIVAG----- 272 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCC---------------CCcHHHHHHHHHHHHHCCCCeEEEe-----
Confidence 44556666666777777778888999987775321 25688999999999865 7999884
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC--Cc--CCCCccc----cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD--EK--DGKKFRA----DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~--~~--~~~~~~~----~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.--+.+-++.+.++|+++|.|.++... .. ...-+.+ .++..+.+++ .++|||+.|||+++.|+.++|. .
T Consensus 273 -~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala-~ 349 (475)
T TIGR01303 273 -NVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALA-A 349 (475)
T ss_pred -ccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHH-c
Confidence 122345577788999999987433111 11 1111223 3333333343 3899999999999999999999 6
Q ss_pred CccEEEEehhhh
Q 023070 160 GCEGVLSAESLL 171 (287)
Q Consensus 160 gad~VmiGR~~l 171 (287)
|||+||+|+.+-
T Consensus 350 GA~~vm~g~~~a 361 (475)
T TIGR01303 350 GASNVMVGSWFA 361 (475)
T ss_pred CCCEEeechhhc
Confidence 999999998764
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=80.24 Aligned_cols=118 Identities=25% Similarity=0.477 Sum_probs=82.7
Q ss_pred CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE----ec-------
Q 023070 43 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----HG------- 111 (287)
Q Consensus 43 cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v----h~------- 111 (287)
-|......+ |-+-|.||..+.+|++++ .+||..|.|+|.-.+ |+.|+..|+|+|.= ++
T Consensus 50 vPaDiR~aG--GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~E-----A~iLealgVD~IDESEVLTPAD~~~Hi 118 (296)
T COG0214 50 VPADIRAAG--GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFVE-----AQILEALGVDMIDESEVLTPADEEFHI 118 (296)
T ss_pred CcHHHHhcc--CccccCCHHHHHHHHHhc----ccceeeeeecchhHH-----HHHHHHhCCCccccccccCCCchhhhc
Confidence 566544444 788899999999998874 699999999986422 67788889988832 11
Q ss_pred ------------------------------cCCCCcCCC--------------------------------CccccHHHH
Q 023070 112 ------------------------------RTRDEKDGK--------------------------------KFRADWNAI 129 (287)
Q Consensus 112 ------------------------------rt~~~~~~~--------------------------------~~~~~~~~i 129 (287)
||..+...+ ...+.++.+
T Consensus 119 ~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv 198 (296)
T COG0214 119 NKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELV 198 (296)
T ss_pred chhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHH
Confidence 111110000 001224556
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 130 KAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 130 ~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+++++.-++||+ +.|||-||.|+.-+++ .|||||.+|+|++.
T Consensus 199 ~~~~~~grLPVvnFAAGGvATPADAALMM~-LGadGVFVGSGIFK 242 (296)
T COG0214 199 KEVAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHhCCCCeEeecccCcCChhHHHHHHH-hCCCeEEecccccC
Confidence 666666578875 8999999999998887 69999999999864
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-06 Score=74.65 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
...++...+..|++.|.+-.-+ +...+.+.+.++++++.+++|++..|||+|+++++++++ .|||+|.+|
T Consensus 136 ~~~~a~aa~~~G~~~i~Le~~s-----Ga~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~-~GAD~VVVG 205 (205)
T TIGR01769 136 AAAYCLAAKYFGMKWVYLEAGS-----GASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVL-AGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHH-cCCCEEEeC
Confidence 3344444445555555442211 111135689999999999999999999999999999987 489999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-07 Score=77.38 Aligned_cols=147 Identities=16% Similarity=0.265 Sum_probs=93.3
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC
Q 023070 12 FVQFCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP 87 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~ 87 (287)
.++|...|++.+.+.++.+. .|+|.|++- +-+|.- .+.....++++++++..+.|+. ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 46778889999999999665 589999996 222321 1222345566666655556643 4432
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC---------------------C--c--------------------CCCCc-c
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E--K--------------------DGKKF-R 123 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~---------------------~--~--------------------~~~~~-~ 123 (287)
+..++++.+.++|++.|++|+.... . . .+.++ .
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~ 143 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQK 143 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccc
Confidence 2345677777888888888763110 0 0 00111 1
Q ss_pred ccHH---HHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 124 ADWN---AIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 124 ~~~~---~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
.+|. .++++++.+ ++||.+.|||+ ++.+.++++ +|+|++.+|++++..++...
T Consensus 144 ~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsai~~~~d~~~ 204 (210)
T TIGR01163 144 FIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSAIFGADDYKE 204 (210)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChHHhCCCCHHH
Confidence 2333 344454433 37999999995 799999887 69999999999998776443
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=80.70 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=97.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
-+.+.+ |-.++++.++..++++ +.|.|-|... . .+.+.+.+.++.+++...-+..+|=+
T Consensus 97 ~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~A--------h-------Ghs~~~i~~ik~ir~~~p~~~viaGN--- 157 (343)
T TIGR01305 97 NVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVA--------N-------GYSEHFVEFVKLVREAFPEHTIMAGN--- 157 (343)
T ss_pred eEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECC--------C-------CcHHHHHHHHHHHHhhCCCCeEEEec---
Confidence 355654 6788999999998887 4888777631 1 25677889999999887444555511
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe------ccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh------~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~ 158 (287)
--+.+-++.+.++|+|.|.|. ..|+.. ..-+.+.+..+..+++.. ++|||+-|||++.-|+.++|.
T Consensus 158 --V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~--~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA- 232 (343)
T TIGR01305 158 --VVTGEMVEELILSGADIVKVGIGPGSVCTTRTK--TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG- 232 (343)
T ss_pred --ccCHHHHHHHHHcCCCEEEEcccCCCcccCcee--CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH-
Confidence 123455778889999999875 122221 122235677777776653 689999999999999999998
Q ss_pred cCccEEEEehhhh
Q 023070 159 TGCEGVLSAESLL 171 (287)
Q Consensus 159 ~gad~VmiGR~~l 171 (287)
.|||+||+|.-+.
T Consensus 233 ~GAd~VMlG~llA 245 (343)
T TIGR01305 233 AGADFVMLGGMFA 245 (343)
T ss_pred cCCCEEEECHhhh
Confidence 6999999994443
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.7e-07 Score=84.82 Aligned_cols=138 Identities=19% Similarity=0.150 Sum_probs=83.2
Q ss_pred HHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHH
Q 023070 20 PEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 20 ~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
|....+.++. +++|+|.|-++-- .+...|.+. -.+|..+.++++. .++||.+.- ..+ .+.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t----~e~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VND----YTTALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHH
Confidence 4455555553 5679999999821 122223111 1256666665554 478998731 112 334555
Q ss_pred HHHcCCCEEEEeccCCC--Cc-CCCCccccHHHHHHHHh-------hC---CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 99 LEDAGCSLLAVHGRTRD--EK-DGKKFRADWNAIKAVKN-------AL---RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~--~~-~~~~~~~~~~~i~~i~~-------~~---~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++|+|.|.+ |+... .. ....+.+....+..+.. .. .+|||+.|||.+..|+.++|. .|||+||
T Consensus 205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA-lGAdaV~ 282 (369)
T TIGR01304 205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA-CGADAVV 282 (369)
T ss_pred HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH-cCCCEee
Confidence 66799999984 22111 10 11111233334444332 22 399999999999999999998 6999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+|+++..--+
T Consensus 283 iGt~~a~a~E 292 (369)
T TIGR01304 283 LGSPLARAAE 292 (369)
T ss_pred eHHHHHhhhc
Confidence 9999976444
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=76.39 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=89.3
Q ss_pred HHHHHcCCCCEEEE--eccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe---cCCCChhhHHHHHHHHH
Q 023070 26 AARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKMLE 100 (287)
Q Consensus 26 aA~~~~~g~d~Idi--N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi---R~g~~~~~~~~~a~~l~ 100 (287)
+...++.|+|.||+ |.++|. ..+.+.+.+-+.++++.+ .|+.+|+ -...+.++....++.+.
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~ 146 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAK 146 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHH
Confidence 33466789999886 444333 345777888888887755 4677787 33345667788899999
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
++|+|+|--.... . ++.+..+.++.+++.+ +++|.++|||+|++++.++++ .||+.+...++
T Consensus 147 ~agadfIKTsTG~-~-----~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~-aGA~riGtS~~ 210 (221)
T PRK00507 147 EAGADFVKTSTGF-S-----TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE-AGATRLGTSAG 210 (221)
T ss_pred HhCCCEEEcCCCC-C-----CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH-cCcceEccCcH
Confidence 9999977443221 1 1246677777777765 499999999999999999998 59998876654
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=85.80 Aligned_cols=130 Identities=17% Similarity=0.165 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 100 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~ 100 (287)
+.+.++..++++|+|.|.|- +.. ...+.+.+.++.+++....++.|+-..- .+.+-++.+.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLA 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHH
Confidence 45666777888999999985 111 1334557888888887654455553221 2234566777
Q ss_pred HcCCCEEEE--ecc----CCCCcCCCCccccHHHHHHHHhhC-------C--CcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 101 DAGCSLLAV--HGR----TRDEKDGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 101 ~~G~~~I~v--h~r----t~~~~~~~~~~~~~~~i~~i~~~~-------~--ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
++|+|+|.| |+. |+.+ ...+.+.+..+.++.++. + +|||+.|||++..|+.++|. .|||+||
T Consensus 303 ~aGAd~I~vg~g~Gs~c~tr~~--~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla-~GA~~vm 379 (502)
T PRK07107 303 EAGADFVKVGIGGGSICITREQ--KGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA-MGADFIM 379 (502)
T ss_pred HcCCCEEEECCCCCcCcccccc--cCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH-cCCCeee
Confidence 899999988 333 2222 223356677777666643 3 89999999999999999998 6999999
Q ss_pred Eehhhhh
Q 023070 166 SAESLLE 172 (287)
Q Consensus 166 iGR~~l~ 172 (287)
+||.+-+
T Consensus 380 ~G~~~ag 386 (502)
T PRK07107 380 LGRYFAR 386 (502)
T ss_pred eChhhhc
Confidence 9998765
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-06 Score=76.28 Aligned_cols=155 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-- 85 (287)
..|+.+|+.-||+..-...|. ..|+|.|.+|..|=... .+ .+.+..+...+.+.-+.+... +.|...++.
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~--A~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAA--ATGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHH--HhCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCCC--eEEEeeechhh
Confidence 569999999988876444443 23789999985544322 11 122333344444443433222 444443332
Q ss_pred C--CChhhHHHHHHH-HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 F--PNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g--~~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+ ....+..+.++. ++..++|+|+|+|..... +++.+.++++++.+++||+.++|+ |++.+.++|.. ||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~------~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~~--AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATGE------PPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLSY--AD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCcccCC------CCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHHh--CC
Confidence 1 112233444544 477899999999875432 578899999999999999999999 57999999984 99
Q ss_pred EEEEehhhhhCccchhc
Q 023070 163 GVLSAESLLENPALFAG 179 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~ 179 (287)
|+.+|+.+-.|=.+...
T Consensus 223 G~IVGS~~K~~G~~~n~ 239 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWENP 239 (254)
T ss_pred EEEEeeeeeeCCEeCCc
Confidence 99999987655554443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=80.21 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=99.7
Q ss_pred EEEEecCCCHHHHHHHHHHHc--CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 11 LFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~--~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+.+.+ |-.++++.++.++++ +++|.|-|... . .+.+.+.+.++.+++.. +.+|.+-
T Consensus 99 ~~vav-G~~~~d~er~~~L~~~~~g~D~iviD~A--------h-------Ghs~~~i~~ik~ik~~~P~~~vIaG----- 157 (346)
T PRK05096 99 VMVST-GTSDADFEKTKQILALSPALNFICIDVA--------N-------GYSEHFVQFVAKAREAWPDKTICAG----- 157 (346)
T ss_pred EEEEe-cCCHHHHHHHHHHHhcCCCCCEEEEECC--------C-------CcHHHHHHHHHHHHHhCCCCcEEEe-----
Confidence 45544 667799999999887 48898877631 1 25678889999999876 6777655
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe------ccCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh------~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+ --+.+.++.|.++|+|.+-|- ..|+.. ..-|.+.+..+.++.+ ..++|||+.|||++.-|+.++|.
T Consensus 158 N-V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v--tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla- 233 (346)
T PRK05096 158 N-VVTGEMVEELILSGADIVKVGIGPGSVCTTRVK--TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG- 233 (346)
T ss_pred c-ccCHHHHHHHHHcCCCEEEEcccCCccccCccc--cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH-
Confidence 1 233467788999999999772 122221 1223456666665554 45899999999999999999998
Q ss_pred cCccEEEEehhhhhC
Q 023070 159 TGCEGVLSAESLLEN 173 (287)
Q Consensus 159 ~gad~VmiGR~~l~n 173 (287)
.|||.||+|+-+-+-
T Consensus 234 aGAd~VMlGsllAGt 248 (346)
T PRK05096 234 GGADFVMLGGMLAGH 248 (346)
T ss_pred cCCCEEEeChhhcCc
Confidence 699999999876543
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-07 Score=86.05 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=100.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
.+-.+.|-.++....+..+++.|+|.|-|... .+ .-..+.+.++.+++.. +.+|.+. +
T Consensus 217 ~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a--------~~-------~~~~~~~~i~~ik~~~p~~~v~ag-----n- 275 (479)
T PRK07807 217 RVAAAVGINGDVAAKARALLEAGVDVLVVDTA--------HG-------HQEKMLEALRAVRALDPGVPIVAG-----N- 275 (479)
T ss_pred chHhhhccChhHHHHHHHHHHhCCCEEEEecc--------CC-------ccHHHHHHHHHHHHHCCCCeEEee-----c-
Confidence 34445555566666666677889988766531 11 2467888999998876 6788764 1
Q ss_pred hhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
-.+.+-++.+.++|+|.|-|-= .|+. ...-+.+++..+.++.+ ..++|||+.|||.++.|+.++|. .|
T Consensus 276 v~t~~~a~~l~~aGad~v~vgig~gsictt~~--~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~-~g 352 (479)
T PRK07807 276 VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRM--MTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA-AG 352 (479)
T ss_pred cCCHHHHHHHHHcCCCEEEECccCCccccccc--ccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH-cC
Confidence 2345667788899999997631 1221 12223578888888877 45899999999999999999999 59
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
||+||+|+.+..-..
T Consensus 353 a~~v~~g~~~ag~~E 367 (479)
T PRK07807 353 ASNVMIGSWFAGTYE 367 (479)
T ss_pred CCeeeccHhhccCcc
Confidence 999999998875443
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-07 Score=84.09 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=92.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
+.+-+ |..++++.++..++++|+|.|-|... . -+.+.+.+.++.+++.. ++||.+--
T Consensus 99 V~aav-g~~~~~~er~~~L~~agvD~ivID~a--------~-------g~s~~~~~~ik~ik~~~~~~~viaGN------ 156 (352)
T PF00478_consen 99 VAAAV-GTRDDDFERAEALVEAGVDVIVIDSA--------H-------GHSEHVIDMIKKIKKKFPDVPVIAGN------ 156 (352)
T ss_dssp EEEEE-ESSTCHHHHHHHHHHTT-SEEEEE-S--------S-------TTSHHHHHHHHHHHHHSTTSEEEEEE------
T ss_pred EEEEe-cCCHHHHHHHHHHHHcCCCEEEcccc--------C-------ccHHHHHHHHHHHHHhCCCceEEecc------
Confidence 34444 55557788888888999999877521 1 14566778888888877 48888761
Q ss_pred hhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
--+.+-++.|.++|+|+|-|-= .|+... .-|.+.+..+.++.+ ..++|||+.|||++.-|+.++|. .|
T Consensus 157 V~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~--GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla-~G 233 (352)
T PF00478_consen 157 VVTYEGAKDLIDAGADAVKVGIGPGSICTTREVT--GVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALA-AG 233 (352)
T ss_dssp E-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHH--SBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHH-TT
T ss_pred cCCHHHHHHHHHcCCCEEEEeccCCccccccccc--ccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeee-ec
Confidence 2335667788999999998841 112111 112355666655544 45799999999999999999998 69
Q ss_pred ccEEEEehhhhh
Q 023070 161 CEGVLSAESLLE 172 (287)
Q Consensus 161 ad~VmiGR~~l~ 172 (287)
||.||+|+.+-.
T Consensus 234 Ad~VMlG~llAg 245 (352)
T PF00478_consen 234 ADAVMLGSLLAG 245 (352)
T ss_dssp -SEEEESTTTTT
T ss_pred ccceeechhhcc
Confidence 999999987643
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=80.06 Aligned_cols=89 Identities=26% Similarity=0.411 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.++|......... ...+++.++++.+.+++||.+.|||++.++++++++ .|||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g---~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEG---GPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LGVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccC---CCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 47889999999999999999755433111 246889999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887754
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=78.08 Aligned_cols=126 Identities=25% Similarity=0.458 Sum_probs=82.7
Q ss_pred CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE----ec-------
Q 023070 43 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----HG------- 111 (287)
Q Consensus 43 cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v----h~------- 111 (287)
-|.....++ |-+-|.||..+++|..+ +.+||..|.|+|.- ++ ++.++..|+|+|.= +.
T Consensus 51 vPadiR~~G--gV~RMsDP~mIKei~~a----VsiPVMAk~RiGHF----VE-AQIlE~l~vDYiDESEvlt~AD~~hhI 119 (296)
T KOG1606|consen 51 VPADIRAQG--GVARMSDPRMIKEIKNA----VSIPVMAKVRIGHF----VE-AQILEALGVDYIDESEVLTPADWDHHI 119 (296)
T ss_pred CCHhHHhcC--CeeecCCHHHHHHHHHh----ccchhhhhhhhhhh----hH-HHHHHHhccCccchhhhcccccccchh
Confidence 355443333 67889999988777654 57999999999743 22 56677777777622 00
Q ss_pred ------------------------------cCCCCcCC--------------------------------CCccccHHHH
Q 023070 112 ------------------------------RTRDEKDG--------------------------------KKFRADWNAI 129 (287)
Q Consensus 112 ------------------------------rt~~~~~~--------------------------------~~~~~~~~~i 129 (287)
||...... ....+-++++
T Consensus 120 ~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv 199 (296)
T KOG1606|consen 120 EKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLV 199 (296)
T ss_pred hhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHH
Confidence 11100000 0001224455
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 130 KAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 130 ~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++.++.-++||+ +.|||.||.|+.-+++ .|||||.+|.+.+..++=++..
T Consensus 200 ~~t~q~GrlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~a 251 (296)
T KOG1606|consen 200 KQTKQLGRLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKRA 251 (296)
T ss_pred HHHHHcCCCceEEecccCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHHH
Confidence 555555578885 8999999999998887 6999999999998777655543
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=81.38 Aligned_cols=140 Identities=21% Similarity=0.125 Sum_probs=85.2
Q ss_pred HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHH
Q 023070 20 PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 20 ~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
+.++.+-++ ++++|+|.|-++..- +...|+..- .++..+.++++. .++||.++- -.+.+.++.
T Consensus 140 ~~~~~e~a~~l~eaGvd~I~vhgrt-----~~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~------V~t~e~A~~ 203 (368)
T PRK08649 140 PQRAQELAPTVVEAGVDLFVIQGTV-----VSAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG------CVTYTTALH 203 (368)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCCc-CCHHHHHHHHHH----CCCCEEEeC------CCCHHHHHH
Confidence 333444444 567799999998531 112222210 145555555544 478998731 122345666
Q ss_pred HHHcCCCEEEEeccCCCC----c-CCCCccccHHHHHHHHhh-------C---CCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 99 LEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKAVKNA-------L---RIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~~----~-~~~~~~~~~~~i~~i~~~-------~---~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.++|+|.|.+ |+.... + ....+.+.+..+.++.+. . ++|||+.|||++..|+.++|. .|||+
T Consensus 204 l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla-lGAd~ 281 (368)
T PRK08649 204 LMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA-CGADA 281 (368)
T ss_pred HHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH-cCCCe
Confidence 77899999977 433210 0 011112334445444321 1 599999999999999999998 69999
Q ss_pred EEEehhhhhCccch
Q 023070 164 VLSAESLLENPALF 177 (287)
Q Consensus 164 VmiGR~~l~nP~lf 177 (287)
||+|+.+..-..-.
T Consensus 282 Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 282 VMLGSPLARAAEAP 295 (368)
T ss_pred ecccchhcccccCC
Confidence 99999998654433
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-06 Score=74.30 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+++.+.++++..++ .+..+.+-+.. .+ + ++++.++|++.|.+|+|+.... ..+++...++.+.. .
T Consensus 145 ~~~~l~~li~~a~~-lGl~~lvevh~---~~---E-~~~A~~~gadiIgin~rdl~~~-----~~d~~~~~~l~~~~p~~ 211 (260)
T PRK00278 145 DDEQLKELLDYAHS-LGLDVLVEVHD---EE---E-LERALKLGAPLIGINNRNLKTF-----EVDLETTERLAPLIPSD 211 (260)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeCC---HH---H-HHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHhCCCC
Confidence 35677888887755 46666655432 22 2 3456688999999998875421 35677788887765 3
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+|+|+-|||.|++++.++++ .|+|+|.+|++++..++.-.
T Consensus 212 ~~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 212 RLVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGA 251 (260)
T ss_pred CEEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHH
Confidence 69999999999999999998 59999999999998777543
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-07 Score=83.88 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHH
Q 023070 59 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKA 131 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~ 131 (287)
.+++-+.+.|+.+++.. +.||++|+-.+...++. +..+.++|+|+|+|.|........ ..|-+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~---~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI---AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH---HHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH---HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46778899999999888 89999999876654332 233778999999998764332110 001111112333
Q ss_pred HHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 132 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 132 i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+. + ++.++++||+.|+.|+.+++. .|||+|.+||++|-
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~igt~~li 308 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-LGADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-SHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEecchhhh
Confidence 3222 1 489999999999999999998 69999999999874
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=80.94 Aligned_cols=87 Identities=14% Similarity=0.286 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-..... +. +.+++.++++.+.+ .||.+.|||+|.++++++++ .|||-|++|+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~-~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-NS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc-CC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHH-CCCCEEEECch
Confidence 4889999999999999999975543211 11 47889999999887 79999999999999999998 69999999999
Q ss_pred hhhCccchhchh
Q 023070 170 LLENPALFAGFR 181 (287)
Q Consensus 170 ~l~nP~lf~~~~ 181 (287)
++.||.+++++.
T Consensus 105 a~~~p~~l~~~~ 116 (241)
T PRK14114 105 VLEDPSFLKFLK 116 (241)
T ss_pred hhCCHHHHHHHH
Confidence 999999999883
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-06 Score=76.27 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=95.6
Q ss_pred CEEEEecCC--CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCcccccccC--ChHHHHHHHHHHh-hccCCc
Q 023070 10 PLFVQFCAN--DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLMD--NLPLVKSLVEKLA-LNLNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~~--~~~~~~~iv~~v~-~~~~~p 78 (287)
-++.=+... +.+...++++ +.+.|+|.|||- |.-|. +..++- .--+|-+ +.+.+.+++++++ +..++|
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA-SLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 356555554 6678888887 456799999997 34444 122211 1112222 4667888999998 556788
Q ss_pred EEEEecCCCCh--h-hHHHHHHHHHHcCCCEEEE--------------------------eccCCCC-------------
Q 023070 79 VSCKIRVFPNL--Q-DTIKYAKMLEDAGCSLLAV--------------------------HGRTRDE------------- 116 (287)
Q Consensus 79 v~vKiR~g~~~--~-~~~~~a~~l~~~G~~~I~v--------------------------h~rt~~~------------- 116 (287)
+.+= ..++. . ...+|++.+.++|+++++| .+.+...
T Consensus 92 ~vlm--~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLM--TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEE--ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 6432 11110 0 2223444455555555444 2111100
Q ss_pred ----cCCCCc-----ccc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ----KDGKKF-----RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ----~~~~~~-----~~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+| +.+ .+.++.+++..++||++.+||++++++.++++ .||||.+|++++
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv 232 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALV 232 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHH
Confidence 001111 123 35889999988999999999999999999986 499999999987
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-06 Score=73.21 Aligned_cols=152 Identities=18% Similarity=0.327 Sum_probs=88.6
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
++.+.|..-|+..+.+.++.+ +.|++.|.+-+. + |... .+..+-.++++.+++.++.|+.+.+-.
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~~~-~~~~~~~~~~~~i~~~~~~~~~v~l~~--- 66 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GHFV-PNLTFGPPVVKALRKHTDLPLDVHLMV--- 66 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CCCC-CccccCHHHHHHHHhhCCCcEEEEeee---
Confidence 357888899999999999855 568999988421 0 1000 011111234455544333444332211
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCC--------------------------C----------------c-CCCCc-cc
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E----------------K-DGKKF-RA 124 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------------------~----------------~-~~~~~-~~ 124 (287)
.+..++++.+.++|+++++||+.... + . .+..+ ..
T Consensus 67 -~d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 67 -ENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred -CCHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCccc
Confidence 12234455555666777666642100 0 0 00011 12
Q ss_pred cH---HHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 125 DW---NAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 125 ~~---~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+| +.++++++.. ++||++.|||+. +++.++++ .|+|+|.+|++++..++...
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~-~gad~iivgsai~~~~~~~~ 205 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAE-AGADVLVAGSALFGSDDYAE 205 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHH-cCCCEEEECHHHhCCCCHHH
Confidence 23 3455555544 489999999985 99999887 69999999999998776544
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-06 Score=71.85 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=88.1
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH-HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP-LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~-~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~ 104 (287)
.-.+++.|++.|-+..- .-.||+ .+.++++..+ ..+.-++..+. +++-+..+.++|+
T Consensus 91 Vd~L~~~Ga~IIA~DaT--------------~R~RP~~~~~~~i~~~k-~~~~l~MAD~S-------t~ee~l~a~~~G~ 148 (229)
T COG3010 91 VDALAEAGADIIAFDAT--------------DRPRPDGDLEELIARIK-YPGQLAMADCS-------TFEEGLNAHKLGF 148 (229)
T ss_pred HHHHHHCCCcEEEeecc--------------cCCCCcchHHHHHHHhh-cCCcEEEeccC-------CHHHHHHHHHcCC
Confidence 33455667777766532 224666 7778887733 33444554432 2333555678999
Q ss_pred CEE--EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 105 SLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 105 ~~I--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|+| |++|.|.... .+..+|+..++++.+ .+++||+.|.+.||+.+.++++ .||++|.+|. ++..|.
T Consensus 149 D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga~aVvVGs-AITRp~ 216 (229)
T COG3010 149 DIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGADAVVVGS-AITRPE 216 (229)
T ss_pred cEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCCeEEEECc-ccCCHH
Confidence 999 7888887433 223589999999988 7999999999999999999999 5999999995 556665
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.7e-06 Score=76.70 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=93.0
Q ss_pred CCCEEEEecCCC--------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccC
Q 023070 8 DRPLFVQFCAND--------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLN 76 (287)
Q Consensus 8 ~~p~~~Qi~g~~--------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~ 76 (287)
+.|+++.+.+.. ...+.++.+.++.|+|.|++-+- +|+. ..+.+.+.+.++++ ..+
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~----------~g~~---~~~~~~~~~~~v~~~~~~~g 139 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN----------VGSE---TEAEMLEDLGEVAEECEEWG 139 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe----------cCCh---hHHHHHHHHHHHHHHHHHcC
Confidence 567788766321 12223344467789999888631 1211 01223444444433 247
Q ss_pred CcEEEEec-------CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC--
Q 023070 77 VPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 147 (287)
Q Consensus 77 ~pv~vKiR-------~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-- 147 (287)
+|+.+=.. ...+.+.....++.+.+.|+|+|-.. + ..+.+.++++.+..++||++.|||+
T Consensus 140 ~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~--~~~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 140 MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------Y--TGDPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred CcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------C--CCCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 88776321 12233344455777889999999443 1 1356888888887789999999999
Q ss_pred CHHHHHHHHH---hcCccEEEEehhhhhCccc
Q 023070 148 HMEDVQKCLE---ETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 148 s~~da~~~l~---~~gad~VmiGR~~l~nP~l 176 (287)
+.+++.+++. +.||+|+.+||.++..|+.
T Consensus 209 ~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p 240 (267)
T PRK07226 209 TDREFLEMVRDAMEAGAAGVAVGRNVFQHEDP 240 (267)
T ss_pred CHHHHHHHHHHHHHcCCcEEehhhhhhcCCCH
Confidence 8888887762 3699999999999987763
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=82.41 Aligned_cols=89 Identities=24% Similarity=0.470 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+++.|++.++|..-.... .+ .+.+++.++++.+.+.+||.+.|||+|.+|++++++ .||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g--~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~-~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EG--RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLD-AGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CT--HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHH-TT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cC--chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHH-hCCCEEEeChH
Confidence 578899999999999999997543321 11 146889999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999998764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-06 Score=73.19 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=51.5
Q ss_pred cccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 123 RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 123 ~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+.+.+.++.+++.+ ++|++..|||+|+++++++++ .|||+|++|..++.||.++.++
T Consensus 164 ~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 164 PVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAE-AGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred CcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHH-cCCCEEEECcHHhhCHHHHHHh
Confidence 45689999999988 899999999999999999997 5999999999999999887653
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.2e-07 Score=78.50 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+++.+.++.+.+.|+..+++-.=+... ..++.+.+.++++.+.+++||-..|||+|.+++..+++ .|++-|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~---~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~-~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAK---AGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLD-AGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccc---cCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHH-CCCCEEEEecc
Confidence 478899999999999999886443321 12257889999999999999999999999999999999 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++-.
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999998764
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-06 Score=75.51 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=87.2
Q ss_pred CCCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.++|+.|.|.+..+ +.+.+..+ +++.+++.|-+.+|.|.. ++.+++ .++.|...+.
T Consensus 54 tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~-~Gi~v~~~v~ 111 (320)
T cd04743 54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEA-IGISTYLHVP 111 (320)
T ss_pred cCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHH-CCCEEEEEeC
Confidence 36788888754311 11222233 345677777777655531 133332 3666765542
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHH-HHHHhh------CCCcEEEecCCCCHHHHHHHH
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAI-KAVKNA------LRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i-~~i~~~------~~ipVi~nGgI~s~~da~~~l 156 (287)
+...++.+++.|+|.|++.|....+.-+. +.-.-|+.+ ..+.+. .++|||+.|||.+...+..++
T Consensus 112 -------s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal 184 (320)
T cd04743 112 -------SPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS 184 (320)
T ss_pred -------CHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH
Confidence 24567889999999999988776543211 001123322 222211 279999999999999998888
Q ss_pred HhcCc--------cEEEEehhhhhCccc
Q 023070 157 EETGC--------EGVLSAESLLENPAL 176 (287)
Q Consensus 157 ~~~ga--------d~VmiGR~~l~nP~l 176 (287)
. .|+ +||.+|+.++.-+..
T Consensus 185 a-LGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 185 A-LAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred H-cCCcccccccccEEEEccHHhcchhh
Confidence 7 467 899999999876654
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.9e-07 Score=79.64 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+++.|+++++|-.=.. ..+.+.+.++++.+ +++||.+.|||++ ++++++++ .|||-|++|+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg------g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~-~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA------DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLD-AGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC------CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHH-cCCCEEEEchH
Confidence 5789999999999999999864422 11467899999998 8899999999996 99999998 69999999999
Q ss_pred hhhC----ccchhchhh
Q 023070 170 LLEN----PALFAGFRT 182 (287)
Q Consensus 170 ~l~n----P~lf~~~~~ 182 (287)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 999987754
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-06 Score=74.79 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=95.1
Q ss_pred CCCCEEEEecCCCHH-------HH-HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---c
Q 023070 7 EDRPLFVQFCANDPE-------IL-LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---L 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~-------~~-~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~ 75 (287)
.+.++++.+.++.|. .+ ..+.+.++.|+|+|++-.- .|+ ..+.+.+ +.+.++++. .
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356788888554332 22 3344567789999888532 222 1122333 445555443 4
Q ss_pred CCcEEEEec-----CCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC--
Q 023070 76 NVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 147 (287)
Q Consensus 76 ~~pv~vKiR-----~g~-~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-- 147 (287)
++|+.+..- ++. +.+.....++...+.|+|+|-+. + ..+.+.++++.+..++||++.|||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhCCCcEEEecCCCCC
Confidence 788877433 222 22233344677889999999763 1 1367889999888899999999999
Q ss_pred CHHHHHHHH----HhcCccEEEEehhhhhCccchh
Q 023070 148 HMEDVQKCL----EETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 148 s~~da~~~l----~~~gad~VmiGR~~l~nP~lf~ 178 (287)
|.+++.+.+ + .|++|+.+||.++..++...
T Consensus 205 ~~~~~~~~i~~~~~-aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 205 SDREFLQMIKDAME-AGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhHhhcCCCHHH
Confidence 656555444 5 69999999999998776443
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-06 Score=73.10 Aligned_cols=146 Identities=16% Similarity=0.265 Sum_probs=99.2
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCC
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVF 86 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g 86 (287)
+.++|...|+..+.+-.+.++ .|+|.+-+- =|+=++ +.-+--++++++++. +++|+.|-+-.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvp-------------n~tfg~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVP-------------NLTFGAPICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccC-------------ccccCHHHHHHHHHhCCCCCEEEEecc-
Confidence 457889999999999888765 488875554 222222 222234567777776 57888777543
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCc-
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF- 122 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~- 122 (287)
++...+++.+.++|++.|++|.-.... ..++.|
T Consensus 68 ---~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 68 ---KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 456677888889999999998531100 011111
Q ss_pred ---cccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 ---RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ---~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+..++.++++++.. ++||.+-|||+ .+.+.++.+ .|||++.+|++++..++
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~-aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE-AGADMFVAGSAIFGQPD 203 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 22345677776654 48999999997 899998888 69999999999876544
|
|
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-07 Score=86.24 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
++-..|.+.+...+ +|.|..|+|+.||...-.++ +|.++-..|..+.|+..-|+..+.+|+.-|+-. +..+..+.+
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTP--Nitd~reva 291 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTP--NITDKREVA 291 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhhhHHHhhhhhhccccccccccCC--Ccccccccc
Confidence 45556666665544 58999999999999755554 799999999999999999998889999999755 445566777
Q ss_pred HHHHHcCCCEEEEe---------------------ccCCCCcCCCC--ccccHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 023070 97 KMLEDAGCSLLAVH---------------------GRTRDEKDGKK--FRADWNAIKAVKNAL-RIPVLANGNVRHMEDV 152 (287)
Q Consensus 97 ~~l~~~G~~~I~vh---------------------~rt~~~~~~~~--~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da 152 (287)
+.....|+..|+.. +|+..+.+.++ .|..+..+-.|++.. ..|+.+.|||.|..|+
T Consensus 292 r~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~ 371 (471)
T KOG1799|consen 292 RSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDA 371 (471)
T ss_pred hhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhcCccccccCcccccch
Confidence 87788888777441 11111111111 012233333344433 5889999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCc
Q 023070 153 QKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+++. .|+.-|.+..|.+..-
T Consensus 372 ~~Fil-~Gs~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 372 AEFIL-LGSNTVQVCTGVMMHG 392 (471)
T ss_pred hhHhh-cCCcHhhhhhHHHhcC
Confidence 99998 5999999999886543
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=70.95 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=99.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-- 85 (287)
..|+.+|+.-||+..-...|. ..|+|+|.+|..|=.. + ++ -+.+..+...+.+.-+.+.. ++.|...++.
T Consensus 79 ~~p~GvnvL~nd~~aal~iA~--a~ga~FIRv~~~~g~~-~-~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh 150 (257)
T TIGR00259 79 SIPLGINVLRNDAVAALAIAM--AVGAKFIRVNVLTGVY-A-SD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKH 150 (257)
T ss_pred CCCeeeeeecCCCHHHHHHHH--HhCCCEEEEccEeeeE-e-cc--cccccccHHHHHHHHHHcCC--CcEEEeceeecc
Confidence 458999999998875444443 3478999998544332 1 11 12333445555555555542 3444333322
Q ss_pred CC--ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 FP--NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 g~--~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+. ......+.++.....| +|+|+|+|..... +.||+.++++++.. ++||+.+||+ +++.+.++++. +
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~--a 221 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTTGT------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI--A 221 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh--C
Confidence 21 1234556677666555 9999999875432 58999999998855 6999999999 58999999985 9
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|||.+|+++- +|.
T Consensus 222 dGviVgS~~K-~~G 234 (257)
T TIGR00259 222 DGVIVATTIK-KDG 234 (257)
T ss_pred CEEEECCCcc-cCC
Confidence 9999999875 444
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=78.28 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+.|+.+++.|+++++|-.= + ..|.+.++++.+.+++||...|||++ ++++++++ .|||.|.+|..++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g---~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------G---PNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------C---CCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 88999999999999988744 1 23889999999999999999999998 99999999 69999999999999
Q ss_pred C----ccchhchhh
Q 023070 173 N----PALFAGFRT 182 (287)
Q Consensus 173 n----P~lf~~~~~ 182 (287)
| |.++.++..
T Consensus 110 ~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 110 KGKFDLKRLKEIVS 123 (253)
T ss_pred CCCCCHHHHHHHHH
Confidence 8 778887754
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=70.06 Aligned_cols=143 Identities=10% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+.+.+.-++|+++.+.+ .+.|+|+|-+|++ +. .+...+.++.+++. +.-+.+-+..
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~~~ 124 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVLNP 124 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEECC
Confidence 345678999999999988776 5668999999975 11 12234555555432 3323333221
Q ss_pred CCChhhHHHHHHHHHHcC-CCEE---EEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 FPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G-~~~I---~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
....+.++.+.+.| +|+| +|++.+..+. ..+..++.++++++. .++||.+-||| +++++.++.+ .|
T Consensus 125 ----~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~-aG 195 (229)
T PLN02334 125 ----GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAE-AG 195 (229)
T ss_pred ----CCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHH-cC
Confidence 12334455555564 9999 4454333221 113445677787776 46899999999 6899999998 69
Q ss_pred ccEEEEehhhhhCccch
Q 023070 161 CEGVLSAESLLENPALF 177 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf 177 (287)
+|+|.+|++++..++..
T Consensus 196 ad~vvvgsai~~~~d~~ 212 (229)
T PLN02334 196 ANVIVAGSAVFGAPDYA 212 (229)
T ss_pred CCEEEEChHHhCCCCHH
Confidence 99999999988766643
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-05 Score=71.40 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=84.2
Q ss_pred HHHHH-HHHHHcCCCCEE--EEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccCCcEEEEecC-CC------
Q 023070 21 EILLN-AARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRV-FP------ 87 (287)
Q Consensus 21 ~~~~~-aA~~~~~g~d~I--diN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~~pv~vKiR~-g~------ 87 (287)
..+.. +.+.++.|+|+| .+|.+-. ..+...+.+.++++ ..++|+.+-... |.
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~---------------~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~ 140 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGSE---------------EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEK 140 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCCc---------------hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCcc
Confidence 34433 334567799998 4554311 12223333333332 347888875543 11
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC--CCHHH----HHHHHHhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMED----VQKCLEETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI--~s~~d----a~~~l~~~ga 161 (287)
+.++....++...+.|+|+|-+.. +.+++.++++++.+++||++.||+ .|+++ +.++++ .|+
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga 208 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGA 208 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCC
Confidence 122333347778899999997731 126788999999899999999987 67766 666676 699
Q ss_pred cEEEEehhhhhCccch
Q 023070 162 EGVLSAESLLENPALF 177 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf 177 (287)
+||.+||.++..|+..
T Consensus 209 ~gv~vg~~i~~~~dp~ 224 (235)
T cd00958 209 AGVAVGRNIFQRPDPV 224 (235)
T ss_pred cEEEechhhhcCCCHH
Confidence 9999999999877643
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=66.64 Aligned_cols=140 Identities=14% Similarity=0.245 Sum_probs=90.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
++++-+--.||+.+ ++-+..+.|+|.|-+|+.+| +..+.++++.+++ .++++.+-+-. .
T Consensus 54 ~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~----------------~~~~~~~i~~~~~-~g~~~~~~~~~---~ 112 (206)
T TIGR03128 54 KVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKK-HGKEVQVDLIN---V 112 (206)
T ss_pred EEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCC----------------HHHHHHHHHHHHH-cCCEEEEEecC---C
Confidence 45544422366543 22224566888888885433 1335666666655 47888876311 2
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.+.+.|++++.++..+..+... +..++.++++++..+ .+|.+.||| +++.+.++++ .|+|+|.+||
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~---~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~-~Ga~~v~vGs 187 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKG---QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIK-LGPDIVIVGG 187 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCC---CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHH-cCCCEEEEee
Confidence 234455666677899999997544433222 344677788877664 455569999 7899999997 6999999999
Q ss_pred hhhhCcc
Q 023070 169 SLLENPA 175 (287)
Q Consensus 169 ~~l~nP~ 175 (287)
+++..++
T Consensus 188 ai~~~~d 194 (206)
T TIGR03128 188 AITKAAD 194 (206)
T ss_pred hhcCCCC
Confidence 9887655
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-06 Score=71.13 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKML 99 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l 99 (287)
...++...++.|+|.||+-+. +|.....+.+.+.+-+.++++.+ ++|+.+=+-.+ .+.++....++.+
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 444455567889999999752 55555567788888888888766 56665544333 3445667788889
Q ss_pred HHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 100 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 100 ~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++|+|+|-.. |... +.+..+.++.+++.+ ++||-++|||+|.+++.++++ .|++-+....
T Consensus 142 ~eaGADfvKTsTGf~~-------~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~-aGa~riGts~ 205 (211)
T TIGR00126 142 IDAGADFVKTSTGFGA-------GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIE-AGASRIGASA 205 (211)
T ss_pred HHhCCCEEEeCCCCCC-------CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HhhHHhCcch
Confidence 99999999654 3221 134455555555544 699999999999999999998 4888765543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=77.99 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+|.+.-+=++.+++.++.|+.+|==+ + .+-|+.+.++|+++|+|+.-...| ....++..+.+.++.+++ +
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGil--t----~eDA~~Ave~G~~GIIVSNHGgRQ--lD~vpAtI~~L~Evv~aV~~r 278 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVL--T----GEDARKAVEAGVAGIIVSNHGGRQ--LDYVPATIEALPEVVKAVEGR 278 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeec--c----cHHHHHHHHhCCceEEEeCCCccc--cCcccchHHHHHHHHHHhcCc
Confidence 44455566777888889999999211 2 233666778999999995332222 223378889999999887 5
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+||...|||++..|+.++|. .||.+|.+||+++..
T Consensus 279 i~V~lDGGVR~G~DVlKALA-LGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 279 IPVFLDGGVRRGTDVLKALA-LGAKGVFIGRPIVWG 313 (363)
T ss_pred eEEEEecCcccchHHHHHHh-cccceEEecCchhee
Confidence 99999999999999999998 699999999987643
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=75.02 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+++...|...+..|...+.+- .+. . ..+.+.++++++.+ ++||++.|||+|+++++++++ .|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~SG-----~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YSG-----A--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CCC-----C--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45677788888899996666554 211 1 25678999999998 999999999999999999997 59999999
Q ss_pred ehhhhhCccchhch
Q 023070 167 AESLLENPALFAGF 180 (287)
Q Consensus 167 GR~~l~nP~lf~~~ 180 (287)
|.+++.||.++.++
T Consensus 204 Gsai~~~p~~~~~~ 217 (219)
T cd02812 204 GNIVEEDPNAALET 217 (219)
T ss_pred CchhhCCHHHHHHH
Confidence 99999999988754
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=75.95 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+....||...|||+|.++++++++ .|||-|.+|+.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~ 104 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTI 104 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECch
Confidence 478999999999999999997554332 1 146779999998854459999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.+++++..
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999988653
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=85.23 Aligned_cols=92 Identities=10% Similarity=0.114 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 158 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~-----------~da~~~l~~ 158 (287)
.+++++|+.+.+.|+|.|++-.-+........-..+++.++++.+.+.+||.+.|||+|. +++.++|+
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~- 345 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR- 345 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-
Confidence 478999999999999999997665432111111345899999999999999999999997 66899998
Q ss_pred cCccEEEEehhhhhCc------------cchhchhh
Q 023070 159 TGCEGVLSAESLLENP------------ALFAGFRT 182 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP------------~lf~~~~~ 182 (287)
.|||-|.||++++.|| .++.++..
T Consensus 346 ~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~ 381 (538)
T PLN02617 346 SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR 381 (538)
T ss_pred cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence 6999999999999975 88877654
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-05 Score=69.00 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=48.4
Q ss_pred cccHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 RADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~i-pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+.+.++++++.+++ ||++.|||+|++++.+++. .|||+|.+|.++..||.
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 4678999999999988 9999999999999999888 59999999999999998
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-06 Score=75.34 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.+.++.+.+.|++.++|-.=.... + .+.+.+.++++.+.+.+||.+.|||+|.++++++++ .|||-|++|+.
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~-~Ga~~vvigT~ 105 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALT-GGRARVNGGTA 105 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHH-cCCCEEEECch
Confidence 366788888999999999886433221 1 146789999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987753
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=74.74 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+-|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~-~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLK-RGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHH-cCCCeEEEcce
Confidence 478899999999999999997655432 1 257889999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.| .++.++..
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 88887654
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-05 Score=64.32 Aligned_cols=141 Identities=19% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+++.+.-.++..+ .+-...+.|+|+|-+|.-. .++...++++.+++ .++++.+-+-
T Consensus 53 ~~~i~~~~~v~~~~~~-~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~~--- 111 (202)
T cd04726 53 DKIIVADLKTADAGAL-EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDLI--- 111 (202)
T ss_pred CCEEEEEEEeccccHH-HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEEe---
Confidence 5678887776777532 1122456799999998421 23445667777664 3555554311
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+..+..+..+ +.+.|++++.++ +++.. ..+ .....+.++++++..++||++.|||+ ++++.++++ .|+|+|.+
T Consensus 112 ~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~-~Gad~vvv 185 (202)
T cd04726 112 GVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAG--GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKK-AGADIVIV 185 (202)
T ss_pred CCCCHHHHHH-HHHCCCCEEEEcCccccc-ccC--CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHh-cCCCEEEE
Confidence 1223334444 667899999885 33222 111 23456778888876789999999995 999999998 59999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
|++++..++
T Consensus 186 Gsai~~~~d 194 (202)
T cd04726 186 GRAITGAAD 194 (202)
T ss_pred eehhcCCCC
Confidence 999876554
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-05 Score=67.79 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=102.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEE-eccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDI-NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~Idi-N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
.-|+-|+ +-+|+.|..|. ++|+|.||| ||-|=...-+. =..+.+.++.++.|+-. ++|++|-+.-
T Consensus 61 ~lPICVS--aVep~~f~~aV---~AGAdliEIGNfDsFY~qGr~--------f~a~eVL~Lt~~tR~LLP~~~LsVTVPH 127 (242)
T PF04481_consen 61 NLPICVS--AVEPELFVAAV---KAGADLIEIGNFDSFYAQGRR--------FSAEEVLALTRETRSLLPDITLSVTVPH 127 (242)
T ss_pred CCCeEee--cCCHHHHHHHH---HhCCCEEEecchHHHHhcCCe--------ecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence 3455554 46888887664 579999999 55544321111 13566778888887765 7888888765
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC--c-----cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--F-----RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~--~-----~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-...++-+++|..|++.|+|.|.--|.+........ | .+.+.....+.+.+++||++.-|+.+ -.+--++.
T Consensus 128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~-vT~PmAia- 205 (242)
T PF04481_consen 128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA-VTAPMAIA- 205 (242)
T ss_pred cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch-hhHHHHHH-
Confidence 556677789999999999999988777765432110 0 12344456677788999999999976 44545565
Q ss_pred cCccEEEEehhh
Q 023070 159 TGCEGVLSAESL 170 (287)
Q Consensus 159 ~gad~VmiGR~~ 170 (287)
.||.||.||.+.
T Consensus 206 aGAsGVGVGSav 217 (242)
T PF04481_consen 206 AGASGVGVGSAV 217 (242)
T ss_pred cCCcccchhHHh
Confidence 599999999875
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.4e-06 Score=76.51 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCC--CccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~--~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
...+++.++.|+|.|++.|-...+..+. ....-..++.++++.++ +|||+.|||.|.+++..++. .|||+|.+|+.
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT~ 215 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGTR 215 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhhh
Confidence 5678889999999999987655433221 11233577899999998 99999999999999999999 59999999999
Q ss_pred hhhCcc
Q 023070 170 LLENPA 175 (287)
Q Consensus 170 ~l~nP~ 175 (287)
++.-..
T Consensus 216 Fl~t~E 221 (336)
T COG2070 216 FLATKE 221 (336)
T ss_pred hhcccc
Confidence 986544
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.7e-05 Score=66.93 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=92.6
Q ss_pred CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cCCcEEEEecCCCC-
Q 023070 19 DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVPVSCKIRVFPN- 88 (287)
Q Consensus 19 ~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~- 88 (287)
+++...++++. .+.|+|.|||- |.-|. +..+..+ =-+|- -.++.+.++++.+++. .++|+.+=.-..+-
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~-~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH-LRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 77899999985 57799999996 34444 1222111 01121 3577889999999854 67887654321100
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-------------------------eccCCC-C-----------------cCCCCc---
Q 023070 89 LQDTIKYAKMLEDAGCSLLAV-------------------------HGRTRD-E-----------------KDGKKF--- 122 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~v-------------------------h~rt~~-~-----------------~~~~~~--- 122 (287)
.....+|.+.+.++|++.+.| .+-|.. . +.+-+|
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~ 187 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARN 187 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCc
Confidence 011223444555555555544 211110 0 011111
Q ss_pred c--cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 R--AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ~--~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+ .. -+.++++++..++||...=||++++++.++.+. ||||.+|+++.
T Consensus 188 ~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 188 PVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred ccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 1 11 356888898889999998899999999999984 99999999886
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-05 Score=67.26 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=82.5
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHHHHcC
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l~~~G 103 (287)
+-+.++.|+|.||+.+. +|..+-.+.+.+.+-+.++++.+ +.|+.+=+-.+ .+.++....++.+.++|
T Consensus 75 ve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G 144 (203)
T cd00959 75 AREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG 144 (203)
T ss_pred HHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 34467789999999752 45444456677777777777766 45555433333 23456677788889999
Q ss_pred CCEEEEe-ccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 104 CSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 104 ~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+|+|-.. |... ..+..+.++.+++. .++||-++|||+|.+++.+++. .||+-+
T Consensus 145 aD~IKTsTG~~~-------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~-~g~~ri 200 (203)
T cd00959 145 ADFIKTSTGFGP-------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE-AGATRI 200 (203)
T ss_pred CCEEEcCCCCCC-------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-hChhhc
Confidence 9999664 3321 13445544444444 4699999999999999999998 488765
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.1e-05 Score=68.12 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=93.0
Q ss_pred CCCHHH--HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhh
Q 023070 17 ANDPEI--LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD 91 (287)
Q Consensus 17 g~~~~~--~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~ 91 (287)
|+++-. ..++-..++.|+|.||+=+ +.|...-.+.+.+.+-|+++++.++-++.+|+=+ + .+.++
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 444444 3444446788999999853 1345555689999999999999886445555433 3 34556
Q ss_pred HHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 92 TIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
....++.+.++|+|+|--+ |-. ++.+..+.++.+++.+ .+.|=++|||+|.+|+..+++. |+.-+...+
T Consensus 142 ~~~A~~i~~~aGAdFVKTSTGf~-------~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~a-ga~RiGtSs 213 (228)
T COG0274 142 KRKACEIAIEAGADFVKTSTGFS-------AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEA-GATRIGTSS 213 (228)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCC-------CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHH-hHHHhcccc
Confidence 6778888999999999443 322 2245666677777665 4889999999999999999984 665554443
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=69.79 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=94.7
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHh-hccCCc
Q 023070 10 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLA-LNLNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~~~-~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~-~~~~~p 78 (287)
.++.=|... |.+.+.++++.+ +.|+|.|||- |.-|. +..++-. =-+|- -+.+.+.++++.++ +..++|
T Consensus 11 ~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~-~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 11 ALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKAS-QRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHH-HHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 355555555 458888988865 5699999997 34454 1111110 01111 25677889999999 777888
Q ss_pred EEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEec--------------------------cCCCC-------------
Q 023070 79 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHG--------------------------RTRDE------------- 116 (287)
Q Consensus 79 v~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~--------------------------rt~~~------------- 116 (287)
+.+=.-. +. ....+|++.+.++|++++++.. .|...
T Consensus 90 ivlm~Y~--N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi 167 (259)
T PF00290_consen 90 IVLMTYY--NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI 167 (259)
T ss_dssp EEEEE-H--HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred EEEEeec--cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence 8654211 10 0123455555566666665521 11100
Q ss_pred ----cCCCCcc-----cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ----KDGKKFR-----AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ----~~~~~~~-----~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+|. .. -+.++.+++.+++||.+.=||++++++.++. .++|||.||++++
T Consensus 168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v 230 (259)
T PF00290_consen 168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFV 230 (259)
T ss_dssp EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHH
T ss_pred EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHH
Confidence 0111111 11 3668889999999999988999999999888 3899999999986
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.7e-06 Score=79.42 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 137 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~- 137 (287)
.+|-.+.+.+..+++.+..|+.+| |. ....+ +..+.+.|++.|.++..... +...+.+..+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV--~~~~D-~~~a~~tg~~~I~vsnhggr--qlD~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GI--LAPED-AAGAGGTGADGIEVSNHGGR--QLDWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CC--CCHHH-HHhhccCCceEEEEEcCCCc--cccCCCChHHHHHHHHHHhCC
Confidence 345555555556655555555555 22 12222 45667889999998532222 22233566788889998875
Q ss_pred -CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 138 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 138 -ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+||++.|||++..|+.+++. .|||+|++||+++.
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAlA-LGA~~v~igrp~L~ 307 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKALA-LGADAVGIGRPFLY 307 (360)
T ss_pred CeEEEecCCCCCHHHHHHHHH-hCCchhhhhHHHHH
Confidence 99999999999999999999 59999999999874
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00019 Score=69.09 Aligned_cols=103 Identities=19% Similarity=0.340 Sum_probs=73.5
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 64 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+.++++.+++ .+.++.+.+ . +..+..+.++.+.+.|+++|.++.....+.. +...++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~-~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~---~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL-I--NVPDPVKRAVELEELGVDYINVHVGIDQQML---GKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe-c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhc---CCChHHHHHHHHhhCCCcEEEE
Confidence 5566666665 466666542 1 2223345567788899999988754322211 1234678899988888999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
||| +.+.+.++++ .|+|+|.+||+++..++
T Consensus 169 GGI-~~~n~~~~l~-aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 169 GGL-DAETAAKAVA-AGADIVIVGGNIIKSAD 198 (430)
T ss_pred CCC-CHHHHHHHHH-cCCCEEEEChHHcCCCC
Confidence 999 6899999998 59999999999987654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=67.70 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+-++.+.+.|+|+|.+......... ....+..++.++++++..++||++.|||. .+++.++++ .|+|+|.+|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~-~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLA-AGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHH-cCCCEEEEehHhhc
Confidence 3355677889999998765433211 11124678999999888899999999995 799998888 69999999999987
Q ss_pred Cccch
Q 023070 173 NPALF 177 (287)
Q Consensus 173 nP~lf 177 (287)
+++..
T Consensus 184 ~~~~~ 188 (196)
T cd00564 184 ADDPA 188 (196)
T ss_pred CCCHH
Confidence 66543
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.7e-05 Score=65.00 Aligned_cols=146 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g-~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
....+..+-.| .+.++....|++..+ +-+.|.|-.- .| .-.|+-|+-...+-.+.+.+. ++-|.--+
T Consensus 61 ~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~ 130 (247)
T PF05690_consen 61 SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYC 130 (247)
T ss_dssp CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE
T ss_pred cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecC
Confidence 34445566655 588999999997754 4677777521 11 124566666555555555432 45554443
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
. +| .-+|++|++.||..+---|-.-. ...|-.+...++.+.+..++|||..+||.++.|+..+++ .|||+
T Consensus 131 ~-----~D-~v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~da 200 (247)
T PF05690_consen 131 T-----DD-PVLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADA 200 (247)
T ss_dssp ------S--HHHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SE
T ss_pred C-----CC-HHHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCce
Confidence 1 22 45799999999998855443222 122346678889999888999999999999999999999 69999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|++.++...
T Consensus 201 VLvNTAiA~ 209 (247)
T PF05690_consen 201 VLVNTAIAK 209 (247)
T ss_dssp EEESHHHHT
T ss_pred eehhhHHhc
Confidence 999988753
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-05 Score=68.47 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCCH-----HHHHHHHH-HHcC-CCCEEEEec-cCCh-h---hhhcCcccccccC----ChHHHHHHHHH
Q 023070 7 EDRPLFVQFCANDP-----EILLNAAR-RVEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD----NLPLVKSLVEK 70 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-----~~~~~aA~-~~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~----~~~~~~~iv~~ 70 (287)
...|+|+|+.-+.. +.+...++ .++. .+. |-||+ .|.. . ..-+.|+-+-.++ ..+...++.+.
T Consensus 41 ~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~ 119 (281)
T PRK06806 41 LNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVP-VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKE 119 (281)
T ss_pred hCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHH
Confidence 35799999966432 33333333 2332 232 55664 2433 2 2234555443332 12233333333
Q ss_pred Hhh---ccCCcEEEEe-cCC-C---------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 71 LAL---NLNVPVSCKI-RVF-P---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 71 v~~---~~~~pv~vKi-R~g-~---------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
+++ ..++||-..+ .+| . +..+..+..+..++.|+|+|.+.-++.-+.+......+++.++++++.+
T Consensus 120 v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~ 199 (281)
T PRK06806 120 IVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV 199 (281)
T ss_pred HHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc
Confidence 332 3367766543 222 1 1123334333345679999987322222222222357899999999999
Q ss_pred CCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 137 RIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 137 ~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++|+++-| ||. .+++.++++ .|+++|-+.+++..+|
T Consensus 200 ~iPlV~hG~SGI~-~e~~~~~i~-~G~~kinv~T~i~~a~ 237 (281)
T PRK06806 200 HIPLVLHGGSGIS-PEDFKKCIQ-HGIRKINVATATFNSV 237 (281)
T ss_pred CCCEEEECCCCCC-HHHHHHHHH-cCCcEEEEhHHHHHHH
Confidence 99999999 995 688999988 6999999999998753
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-05 Score=71.42 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHHHHHHcC-CCEEEEeccCCCCc-CCCCccccHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 93 IKYAKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 93 ~~~a~~l~~~G-~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~--------~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+-|+.+++.| +|.|++. ....+. ...+...-+..+.++++.+ ++||++.|||.|++++..++. .|||
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-lGAd 243 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-LGAD 243 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-cCCc
Confidence 34466667777 6999986 222111 0111112234455555444 699999999999999999998 5999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+|++|+.++.-+.
T Consensus 244 ~V~~GT~flat~E 256 (418)
T cd04742 244 FIVTGSINQCTVE 256 (418)
T ss_pred EEeeccHHHhCcc
Confidence 9999999988665
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=70.54 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---cCCcEEEEecCCCCh--------hh
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCKIRVFPNL--------QD 91 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~pv~vKiR~g~~~--------~~ 91 (287)
..++.+.++.|+|+|++-+. +|...-.+.+.+.+.+.++++. .++||.+-.-+ .+. +.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 45555677889999998642 2222222344455555555443 36787776322 111 13
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc----EEEecCC------CCHHHHHHHHHhcCc
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP----VLANGNV------RHMEDVQKCLEETGC 161 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip----Vi~nGgI------~s~~da~~~l~~~ga 161 (287)
....++.+.++|+|+|-..-... ......+...++++.+..++| |.++||| ++.+++.++++ .||
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~-aGa 222 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIE-AGA 222 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHH-TTH
T ss_pred HHHHHHHHHHhCCCEEEecCCcc----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHH-cCC
Confidence 46778888999999996642211 111124556677777767889 9999999 99999999998 599
Q ss_pred --cEEEEehhhhh
Q 023070 162 --EGVLSAESLLE 172 (287)
Q Consensus 162 --d~VmiGR~~l~ 172 (287)
-|++.||.++.
T Consensus 223 ~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 223 DRIGTSSGRNIWQ 235 (236)
T ss_dssp SEEEEEEHHHHHT
T ss_pred hhHHHHHHHHHHc
Confidence 99999998764
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-05 Score=69.03 Aligned_cols=130 Identities=19% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCC-CChh-hHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF-PNLQ-DTIKYAK 97 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g-~~~~-~~~~~a~ 97 (287)
...++...++.|+|.||+=+. +|..+..+.+.+.+-+.+|++.++ .|+-|=+-.+ .+.+ +....++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 344455577889999998542 455555688888888888887654 3333333333 2334 3667888
Q ss_pred HHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 98 MLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 98 ~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~-------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+.++|+|+|-- +|.. ++.+..+.++.+++.+ ++-|=++|||+|.+++.++++. |+-
T Consensus 155 ~a~~aGADFVKTSTGf~-------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a--------g~~ 219 (257)
T PRK05283 155 IAIKAGADFIKTSTGKV-------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL--------ADE 219 (257)
T ss_pred HHHHhCCCEEEcCCCCC-------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH--------HHH
Confidence 999999999944 3321 1134555555554442 4778999999999999999984 555
Q ss_pred hhhCccc
Q 023070 170 LLENPAL 176 (287)
Q Consensus 170 ~l~nP~l 176 (287)
.+++-|+
T Consensus 220 ~lg~~~~ 226 (257)
T PRK05283 220 ILGADWA 226 (257)
T ss_pred HhChhhc
Confidence 5555443
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.4e-05 Score=65.45 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR 84 (287)
-..|+.+++.-||+-.....|. ..|+|+|-+|..|-....-. +.+..+...+.+....+...+. ..|-||..
T Consensus 84 v~iPvGvNVLrNd~vaA~~IA~--a~gA~FIRVN~~tg~~~tdq----Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa 157 (263)
T COG0434 84 VSIPVGVNVLRNDAVAALAIAY--AVGADFIRVNVLTGAYATDQ----GIIEGNAAELARYRARLGSRVKVLADVHVKHA 157 (263)
T ss_pred ccccceeeeeccccHHHHHHHH--hcCCCEEEEEeeeceEeccc----ceecchHHHHHHHHHhccCCcEEEeecchhcc
Confidence 3579999999998754333222 23789999996544321111 2333344444444455542221 12334433
Q ss_pred CCCChhhHHHHHHH-HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 85 VFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 85 ~g~~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
......+..+.++- ++..++|+++++|.+... ++|.+.++.+++..++||+++.|+ +++.+.++|+. |||
T Consensus 158 ~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~------~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~~--adG 228 (263)
T COG0434 158 VHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS------PPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLKI--ADG 228 (263)
T ss_pred cccCCcCHHHHHHHHHHccCCCEEEEecccCCC------CCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHHH--cCc
Confidence 32222234444444 778889999999875431 688999999999999999999999 68999999985 999
Q ss_pred EEEehhhhhC
Q 023070 164 VLSAESLLEN 173 (287)
Q Consensus 164 VmiGR~~l~n 173 (287)
+++|+.+=.+
T Consensus 229 ~IvgT~lK~~ 238 (263)
T COG0434 229 VIVGTSLKKG 238 (263)
T ss_pred eEEEEEEccC
Confidence 9999866433
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0001 Score=64.90 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHcC-C-------CCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 18 NDPEILLNAARRVEP-Y-------CDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~-g-------~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.+.++..+.|++..+ + -+.|.|-. |-| -.|+-|+-...+-.+.+.+. ++.|.--+
T Consensus 81 ~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~VlPY~----- 144 (267)
T CHL00162 81 QTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDP----------KYLLPDPIGTLKAAEFLVKK-GFTVLPYI----- 144 (267)
T ss_pred CCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCC----------cccCCChHHHHHHHHHHHHC-CCEEeecC-----
Confidence 577888888876533 2 45655542 211 35666776666665555432 44454332
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+| .-+|+++++.||..|---|-.-. ...|-.+...++.+.+..++||+..+||.+++|+..+++ .|||+|.+.+
T Consensus 145 ~~D-~v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nS 219 (267)
T CHL00162 145 NAD-PMLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNT 219 (267)
T ss_pred CCC-HHHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecc
Confidence 123 35799999999988844332221 122345677888999999999999999999999999999 6999999999
Q ss_pred hhhh
Q 023070 169 SLLE 172 (287)
Q Consensus 169 ~~l~ 172 (287)
|+..
T Consensus 220 aIak 223 (267)
T CHL00162 220 AVAQ 223 (267)
T ss_pred eeec
Confidence 9873
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.7e-05 Score=65.07 Aligned_cols=149 Identities=17% Similarity=0.315 Sum_probs=98.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
-+.++|...|+..+.+-.+.++. |+|.+-+-.- .+ .+..+..+-.++++++++.. ++|+.+|+-.
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~Dim-------Dg----~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~-- 74 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVM-------DG----HFVPNLSFGPPVVKSLRKHLPNTFLDCHLMV-- 74 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecc-------cC----ccCCCcCcCHHHHHHHHhcCCCCCEEEEECC--
Confidence 36789999999999999987754 7887555421 00 11112222246677777766 8999999752
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------c---------------------------------CCCC
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K---------------------------------DGKK 121 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------~---------------------------------~~~~ 121 (287)
.+...+++.+.++|++.++||+-.... . .+..
T Consensus 75 --~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~ 152 (228)
T PTZ00170 75 --SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFG 152 (228)
T ss_pred --CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCC
Confidence 456667788889999999999642111 0 0000
Q ss_pred cc----ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 122 FR----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 122 ~~----~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|. ..++.++++++.. .+.|.+.|||+ ++.+..+.+ .|+|.+++||++...++
T Consensus 153 gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~-aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 153 GQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAAD-AGANVIVAGSSIFKAKD 209 (228)
T ss_pred CcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHH-cCCCEEEEchHHhCCCC
Confidence 00 0123455555543 46788999996 588888887 59999999999887665
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00025 Score=61.50 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh--hh--cCccccc------ccCChHHHHHHHHHHhh--
Q 023070 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI--AR--RGNYGAF------LMDNLPLVKSLVEKLAL-- 73 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~--~~--~~~~G~~------l~~~~~~~~~iv~~v~~-- 73 (287)
...|+++=+.+.++++..+.++. ++.|+..||+-+-.|... .+ ...|+.. -.-+++.+...+++=.+
T Consensus 8 ~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 8 TKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLI 87 (206)
T ss_pred HhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEE
Confidence 35677777999999999999985 566899999986555411 10 1122211 01223332222221000
Q ss_pred --------------ccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 74 --------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 74 --------------~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
..+.++..- .....+ +....+.|+|++.+.+- ....++.++.+++.. +
T Consensus 88 vsp~~~~~v~~~~~~~~~~~~~G------~~t~~E-~~~A~~~Gad~vk~Fpa---------~~~G~~~l~~l~~~~~~~ 151 (206)
T PRK09140 88 VTPNTDPEVIRRAVALGMVVMPG------VATPTE-AFAALRAGAQALKLFPA---------SQLGPAGIKALRAVLPPD 151 (206)
T ss_pred ECCCCCHHHHHHHHHCCCcEEcc------cCCHHH-HHHHHHcCCCEEEECCC---------CCCCHHHHHHHHhhcCCC
Confidence 011222111 011122 34455678888876321 123468899998877 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+|+++.||| +++++.++++ .|+|+|.++++++...
T Consensus 152 ipvvaiGGI-~~~n~~~~~~-aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 152 VPVFAVGGV-TPENLAPYLA-AGAAGFGLGSALYRPG 186 (206)
T ss_pred CeEEEECCC-CHHHHHHHHH-CCCeEEEEehHhcccc
Confidence 999999999 7899999998 6999999999997643
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.7e-05 Score=69.48 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~-~gad~VmiGR 168 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+++.++++.+. +||...|||+|.+|+++++.. .+||-|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~--~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--G--LGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--C--CcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 478899999999999999987554431 1 14688999999887 499999999999999998652 2699999999
Q ss_pred hhhhCccchhchh
Q 023070 169 SLLENPALFAGFR 181 (287)
Q Consensus 169 ~~l~nP~lf~~~~ 181 (287)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999988764
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-05 Score=67.02 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+....+.|+|+|.+++........ ......++.++++++..+ +||++.||| +.+++.++++ .|+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~-~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE-AGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEeHHhhcC
Confidence 455567899999887544332111 111234889999988877 999999999 6899999998 699999999998765
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
++
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 54
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=62.51 Aligned_cols=153 Identities=14% Similarity=0.277 Sum_probs=104.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
.++.++|...|...+.+-.+.++ +|+|.|-+-.. . +-+..+.-+--.+++++++.+..|+.|-+-.
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVM-------D----ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV-- 70 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVM-------D----GHFVPNITFGPPVVKALRKITDLPLDVHLMV-- 70 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEecc-------C----CCcCCCcccCHHHHHHHhhcCCCceEEEEec--
Confidence 46789999999999999998776 58988766521 0 1112222333567888888778999888644
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC-----------------------C--------------------cCCCCc--
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------------------E--------------------KDGKKF-- 122 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~-----------------------~--------------------~~~~~~-- 122 (287)
++...+++.+.++|+++|++|.-... . ..++.|
T Consensus 71 --~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 71 --ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred --CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 45667888899999999999853100 0 011111
Q ss_pred --cccHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 123 --RADWNAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 123 --~~~~~~i~~i~~~~----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+.-++-++++++.. ++-|-+-|||+ .+.+..+.+ .|||.++.|++++.+++.-.
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~-AGad~~VaGSalF~~~d~~~ 208 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAA-AGADVFVAGSALFGADDYKA 208 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHH-cCCCEEEEEEEEeCCccHHH
Confidence 12245556665543 24577999995 588887777 59999999999998888433
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00027 Score=61.42 Aligned_cols=140 Identities=10% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.|+.+.++.++++.+.+.+ .+.|+|+|-+|.+- .+...+.++.+++. ++.+.+-+.. +
T Consensus 62 ~~~~v~l~v~d~~~~i~~~--~~~g~d~v~vh~~~-----------------~~~~~~~~~~~~~~-~~~~g~~~~~--~ 119 (220)
T PRK05581 62 LPLDVHLMVENPDRYVPDF--AKAGADIITFHVEA-----------------SEHIHRLLQLIKSA-GIKAGLVLNP--A 119 (220)
T ss_pred CcEEEEeeeCCHHHHHHHH--HHcCCCEEEEeecc-----------------chhHHHHHHHHHHc-CCEEEEEECC--C
Confidence 4677899999999887655 36799999999541 12223344444432 3444433311 1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH---HHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHhcC
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW---NAIKAVKNALR-----IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~---~~i~~i~~~~~-----ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+..+.++.+. .+++++.+-+........ ..+| +.++++++..+ .+|.+.|||+. +++.++++ .|
T Consensus 120 --t~~e~~~~~~-~~~d~i~~~~~~~g~tg~---~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~-~G 191 (220)
T PRK05581 120 --TPLEPLEDVL-DLLDLVLLMSVNPGFGGQ---KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAE-AG 191 (220)
T ss_pred --CCHHHHHHHH-hhCCEEEEEEECCCCCcc---cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHH-cC
Confidence 1123344432 347777664432211111 2233 34444444322 33567899987 89999887 69
Q ss_pred ccEEEEehhhhhCccchh
Q 023070 161 CEGVLSAESLLENPALFA 178 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~ 178 (287)
+|+|.+|++++.+|+...
T Consensus 192 aD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 192 ADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred CCEEEEChhhhCCCCHHH
Confidence 999999999998777544
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0003 Score=61.09 Aligned_cols=148 Identities=11% Similarity=0.216 Sum_probs=96.4
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+.++|.+.|+..+.+-.+.++ .|+|.+-+-.- .+. +..+.-+--++++++++.+++|+.|-+-.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~----FVPN~tfG~~~i~~l~~~t~~~~DvHLMv---- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTS----FINNITFGMKTIQAVAQQTRHPLSFHLMV---- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCC----cCCccccCHHHHHHHHhcCCCCeEEEecc----
Confidence 568899999999999888665 48887555421 111 11222233456777777777887776533
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCcc---
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKFR--- 123 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~~--- 123 (287)
.+...+++.+.++|++.|++|.-.... ..++.|.
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 355667888889999999998531100 0111111
Q ss_pred -ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 -ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 -~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.-++.++++++.. ...|.+-|||+ .+.+.++.+ .|||.+.+|++++.+++
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~-aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 1234455555443 34689999996 688887887 69999999999876655
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00019 Score=61.26 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCCh-----hhhhcCcc-----cccccCChHHHHH----------
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQ-----RIARRGNY-----GAFLMDNLPLVKS---------- 66 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~-----~~~~~~~~-----G~~l~~~~~~~~~---------- 66 (287)
..|+++=+.+.+++++.+.++. ++.|++.|++.+-.|. ...++ .| |+...-+.+.+..
T Consensus 3 ~~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~-~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRK-EFPEALIGAGTVLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred cCcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHH-HCCCCEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 4577777899999999999885 5668999999765442 11111 12 2222223333322
Q ss_pred -------HHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 67 -------LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 67 -------iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+++..+. .+.++.+-+ . +. +-+..+.+.|+|+|-+.... +...++++.+++.. ++
T Consensus 82 ~p~~~~~~~~~~~~-~~~~~i~gv----~--t~-~e~~~A~~~Gad~i~~~p~~---------~~g~~~~~~l~~~~~~~ 144 (190)
T cd00452 82 SPGLDPEVVKAANR-AGIPLLPGV----A--TP-TEIMQALELGADIVKLFPAE---------AVGPAYIKALKGPFPQV 144 (190)
T ss_pred cCCCCHHHHHHHHH-cCCcEECCc----C--CH-HHHHHHHHCCCCEEEEcCCc---------ccCHHHHHHHHhhCCCC
Confidence 2222221 234443322 1 22 22455568999999884311 12356788887765 59
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
|+++.||| +++++.++++ .|+|+|.++..++
T Consensus 145 p~~a~GGI-~~~n~~~~~~-~G~~~v~v~s~i~ 175 (190)
T cd00452 145 RFMPTGGV-SLDNAAEWLA-AGVVAVGGGSLLP 175 (190)
T ss_pred eEEEeCCC-CHHHHHHHHH-CCCEEEEEchhcc
Confidence 99999999 8999999998 5899999999887
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=65.03 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=45.3
Q ss_pred cccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 123 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 123 ~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
..|++...++...+ ++.+|+.+||.+++|+..+.. .|+|+|.||+++|..|+.-..+
T Consensus 193 ~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~-~G~davLVGe~lm~~~d~~~~~ 251 (254)
T PF00218_consen 193 EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR-AGADAVLVGEALMRSPDPGEAL 251 (254)
T ss_dssp CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT-TT-SEEEESHHHHTSSSHHHHH
T ss_pred ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHH
Confidence 46677777777765 478999999999999998887 6999999999999998865543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0003 Score=66.28 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=97.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+.++ ..+.||+.|.|..|-+ ..++.-.+.++++++.+ ++++.+...-+|+.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888888776 5567999999953210 11455678888998877 57888888888999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s-~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++- +.- .+.+++..+++++.+++||.+...+.+ ++++.++++...+|.|.+
T Consensus 209 ~~~l~~~~l~~iE-------eP~---~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYE-------DPL---REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEe-------CCC---CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9999999877662 111 134678888999999999988888999 999999999877888876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=61.15 Aligned_cols=146 Identities=14% Similarity=0.269 Sum_probs=97.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCCEEEEec--cCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCC
Q 023070 11 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVF 86 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~--gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g 86 (287)
+.++|...|+..+.+-.+.++. |+|.+-+-. |.=+ .+.-+--++++++++. +++|+.|-+-.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FV-------------PN~tfg~~~i~~lr~~~~~~~~dvHLMv- 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYV-------------PNLTIGPMVCQALRKHGITAPIDVHLMV- 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccC-------------CCcccCHHHHHHHHhhCCCCCEEEEecc-
Confidence 6789999999999999987754 888755542 2111 1222334577888876 58888877643
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCcc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKFR 123 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~~ 123 (287)
.+...+++.+.++|++.|++|.-.... ..++.|.
T Consensus 72 ---~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 72 ---EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 356667888889999999998531100 0111111
Q ss_pred ----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 ----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 ----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..++-++++++. .++.|-+.|||+ .+.+..+.+ .|||.+++|+++...++
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~-aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAA-AGADTFVAGSAIFNAPD 207 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEChhhhCCCC
Confidence 123445555543 246689999996 688888887 69999999999876555
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00053 Score=64.88 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=96.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.|--.|+..+. +-...+.|+|.+.+|... ..+.+.+.++.+++. ++-+.+.+ +
T Consensus 226 ~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea----------------~~~ti~~ai~~akk~-GikvgVD~-l-- 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE-ARMAADATADAVVISGLA----------------PISTIEKAIHEAQKT-GIYSILDM-L-- 284 (391)
T ss_pred CCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccC----------------CHHHHHHHHHHHHHc-CCEEEEEE-c--
Confidence 46799999999999886 223557799999999531 233456666666654 44444421 1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+..+..+.++.+ ..++|.+.+|.....+.. ..-|+.++++++. .+++|.+.|||. .+++.++++ .|+|.+.+
T Consensus 285 np~tp~e~i~~l-~~~vD~Vllht~vdp~~~----~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~-aGADivVV 357 (391)
T PRK13307 285 NVEDPVKLLESL-KVKPDVVELHRGIDEEGT----EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALK-AGADILVV 357 (391)
T ss_pred CCCCHHHHHHHh-hCCCCEEEEccccCCCcc----cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHH-cCCCEEEE
Confidence 123445566666 678999999942222211 2456778888774 478999999997 899988887 69999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
||+++..++
T Consensus 358 GsaIf~a~D 366 (391)
T PRK13307 358 GRAITKSKD 366 (391)
T ss_pred eHHHhCCCC
Confidence 999876555
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.7e-05 Score=66.72 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+-+..+++.|+|+|.+.......+.....+.-|+.++.+++...+|+++-||| +++.+.++++ +|+|||.+-|+++.
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga~gVAvvsai~~ 191 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCCCeEEehhHhhc
Confidence 355667788999999986655444333334567899999998888999999999 5799999998 69999999999998
Q ss_pred Cccchhc
Q 023070 173 NPALFAG 179 (287)
Q Consensus 173 nP~lf~~ 179 (287)
.++....
T Consensus 192 a~d~~~a 198 (211)
T COG0352 192 AADPAAA 198 (211)
T ss_pred CCCHHHH
Confidence 7775543
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=67.12 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=103.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..+...+++++.+.++ .++.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...
T Consensus 130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 345555665567777765554 667799888876541 23455567788888877 477888888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++.++++.+++.++.+|- +.- .+.|++..+++++.+++||.+...+.++.++.++++...+|.|
T Consensus 195 ~~~~~~~A~~~~~~l~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i 264 (355)
T cd03321 195 QSLTVPEAIERGQALDQEGLTWIE-------EPT---LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLV 264 (355)
T ss_pred CCcCHHHHHHHHHHHHcCCCCEEE-------CCC---CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeE
Confidence 789999999999999999988873 111 1357899999999999999998899999999999998778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 265 ~~ 266 (355)
T cd03321 265 MP 266 (355)
T ss_pred ec
Confidence 76
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=62.25 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
..+++.+.+.+. +.++|+|.||-. .+++ .++.+++..+.++...+..... ...+.
T Consensus 59 n~~~~~i~~ia~--~~~~d~Vqlhg~----------------e~~~----~~~~l~~~~~~~~i~~i~~~~~--~~~~~- 113 (203)
T cd00405 59 NEDLEEILEIAE--ELGLDVVQLHGD----------------ESPE----YCAQLRARLGLPVIKAIRVKDE--EDLEK- 113 (203)
T ss_pred CCCHHHHHHHHH--hcCCCEEEECCC----------------CCHH----HHHHHHhhcCCcEEEEEecCCh--hhHHH-
Confidence 445555555543 236788888721 1222 3444454445666544444322 11222
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
......|+|++.+...+.....+...+.+|+.+++++ .++||++.||| +++.+.++++...++||-+++++...|..
T Consensus 114 ~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 114 AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 2334578999988655543221112257999988876 67999999999 89999999996449999999999877764
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00031 Score=62.32 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=82.0
Q ss_pred HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----------
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F---------- 86 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g---------- 86 (287)
..+.|+++|.++. -...||+++ +.++.+++.+++||-.|==+ |
T Consensus 70 y~~~GA~aISVlT-------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 70 YETLGASAISVLT-------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHCCCcEEEEEc-------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 4456888887762 233355543 33455566667898888322 1
Q ss_pred CChhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 149 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~ 149 (287)
.+.++..++.+...+.|.+.+ -||...- +.+.-.+...|.+...++...+ +..+|+.+||.|+
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~ 214 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESR 214 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 112233444555555555444 3442100 0011112245677777777765 4678899999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+|+.++.. . +|+|.||.++|..++.-..+
T Consensus 215 ~d~~~l~~-~-~davLvG~~lm~~~d~~~~~ 243 (247)
T PRK13957 215 SDLDKFRK-L-VDAALIGTYFMEKKDIRKAW 243 (247)
T ss_pred HHHHHHHH-h-CCEEEECHHHhCCCCHHHHH
Confidence 99998775 4 99999999999988865433
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00021 Score=66.43 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc----ccHHHHHHHHhhC
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL 136 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~ 136 (287)
++...+.+..+++..++||.++++. .+.++..++++.++++|+++|.+|-..........+. .-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4566677777777778999999965 4557788999999999999999964221111111111 1357788899888
Q ss_pred CCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 137 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 137 ~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999976 556677788888888999998663
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00062 Score=61.84 Aligned_cols=163 Identities=17% Similarity=0.258 Sum_probs=93.6
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHHHcCCCC--EEEEec-cCCh-h---hhhcCcccccccC----ChHHHHHHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARRVEPYCD--YVDINL-GCPQ-R---IARRGNYGAFLMD----NLPLVKSLVE 69 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~~~~g~d--~IdiN~-gcP~-~---~~~~~~~G~~l~~----~~~~~~~iv~ 69 (287)
...|+|+|+.-+. .+.+...++.+...++ -|-+|+ .|+. . ..-+.++.+-.++ ..+...+..+
T Consensus 39 ~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~ 118 (282)
T TIGR01859 39 ENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTK 118 (282)
T ss_pred hCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 3689999986532 3345555543322233 356663 4543 2 2334555433322 1122222333
Q ss_pred HHh---hccCCcEEEEecC--C---------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 70 KLA---LNLNVPVSCKIRV--F---------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 70 ~v~---~~~~~pv~vKiR~--g---------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
.+. ...+++|-..+.. | ....+..+..+..++.|+|+|.+.-++.-+.+......+++.++++++.
T Consensus 119 ~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 119 KVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred HHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH
Confidence 332 2335666655543 1 0111333333333458999998742222211222235789999999999
Q ss_pred CCCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 136 LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 136 ~~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+++|+++-| ||. .+++.++++ .|+++|-+++.+.
T Consensus 199 ~~iPlv~hGgSGi~-~e~i~~~i~-~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 199 TNIPLVLHGASGIP-EEQIKKAIK-LGIAKINIDTDCR 234 (282)
T ss_pred hCCCEEEECCCCCC-HHHHHHHHH-cCCCEEEECcHHH
Confidence 999999999 995 588999998 5999999998775
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00051 Score=65.84 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHHHHHcC-CCEEEEeccCCCCc-CCCCccccHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 96 AKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 96 a~~l~~~G-~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~--------~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
|+.+++.| +|.|++. ....+. ...+...-++.+.++++.+ ++||++.|||.|++++..+|. .|||+|+
T Consensus 174 A~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAdgV~ 251 (444)
T TIGR02814 174 AELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGADFIV 251 (444)
T ss_pred HHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCcEEE
Confidence 45566666 5888884 221111 0111112233444444444 799999999999999999998 5999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+|+.++.-+.
T Consensus 252 ~GT~flat~E 261 (444)
T TIGR02814 252 TGSVNQCTVE 261 (444)
T ss_pred eccHHHhCcc
Confidence 9999987655
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=68.43 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=61.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+..+.+.|+|+|.+.+...........+..++.++.+++..++||++-|||. ++++.+++. .|+++|.++++++..++
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~-~Ga~gVAvisaI~~a~d 330 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQ-AGAKRVAVVRAIMGAED 330 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHH-cCCcEEEEeHHHhCCCC
Confidence 4556678999999876554432222224678999999988899999999995 899998887 69999999999986544
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=61.24 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=90.2
Q ss_pred HHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---------------
Q 023070 23 LLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------------- 86 (287)
Q Consensus 23 ~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--------------- 86 (287)
..+-++ +++.|-|+|-| |++.--+.+.+.++++++++..++|+.+=-...
T Consensus 30 ~~ei~~~~~~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~sv 95 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSV 95 (240)
T ss_pred cHHHHHHHHHcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEE
Confidence 344444 34568999988 555556778899999999988899988754320
Q ss_pred -------CChhhHHHHHHHHHHcCC-----CEEEEe--------c------cCCCC---------------------cCC
Q 023070 87 -------PNLQDTIKYAKMLEDAGC-----SLLAVH--------G------RTRDE---------------------KDG 119 (287)
Q Consensus 87 -------~~~~~~~~~a~~l~~~G~-----~~I~vh--------~------rt~~~---------------------~~~ 119 (287)
|-...-.+-++.+.+.+. .++++- + ++... ..+
T Consensus 96 LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsg 175 (240)
T COG1646 96 LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSG 175 (240)
T ss_pred ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCC
Confidence 101111233344444432 222221 1 11100 012
Q ss_pred CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.+.|...+.++++++.. |+|+.|||+|++.+.++.+ .|||.++.|..+..+|+-+.++
T Consensus 176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~-agAD~IVtG~iiee~~~~~~~~ 233 (240)
T COG1646 176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAE-AGADTIVTGTIIEEDPDKALET 233 (240)
T ss_pred CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHH-cCCCEEEECceeecCHHHHHHH
Confidence 23355667777776654 9999999999999999998 5999999999999999765543
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=61.53 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=56.9
Q ss_pred HHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
..+.+.|+|++.+......... ....+..++.++++++.. ++||++.||| +++++.++++ .|+|+|.+|++++..+
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 3466789999987544332211 111134688899888765 5999999999 5899998887 6999999999998654
Q ss_pred c
Q 023070 175 A 175 (287)
Q Consensus 175 ~ 175 (287)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0007 Score=63.42 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=106.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
...|+-..+.+.+++.+.+-++ ..+.||..+.+..|-+..+. + --.+++.-.+.++++++.+ ++.+.+..
T Consensus 111 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~-----~~~~~~~D~~~i~avr~~~g~~~~l~vDa 183 (352)
T cd03325 111 DRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--D-----TSKKVDAAVERVAALREAVGPDIDIGVDF 183 (352)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--C-----CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 3456666666778888765554 56779999999876321100 0 0023556677888888876 57788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+.+| ++.- .+.|++..+++++.+.+||.+.=.+.+++++..+++...+|.
T Consensus 184 N~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~ 253 (352)
T cd03325 184 HGRVSKPMAKDLAKELEPYRLLFI-------EEPV---LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDI 253 (352)
T ss_pred CCCCCHHHHHHHHHhccccCCcEE-------ECCC---CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCE
Confidence 878999999999999999998877 2211 135789999999999999999888999999999998777888
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
|.+-
T Consensus 254 v~~d 257 (352)
T cd03325 254 IQPD 257 (352)
T ss_pred EecC
Confidence 8763
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=58.05 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~ 93 (287)
..++++....|++..+ +.|.|.|-. +++. .|+-|+-...+-.+.+.+. ++.|..- ..+| .
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~dD-~ 141 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPY-----TTDD-P 141 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeec-----cCCC-H
Confidence 3578899999987754 457777763 3322 4555555444444444322 3444332 2233 3
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
-+|+++++.||..+-=-+-.- ...-|..+-..++.+.+..++|||+.-||.++.|+...++ .|||+|++-++.-
T Consensus 142 v~arrLee~GcaavMPl~aPI---GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA 215 (262)
T COG2022 142 VLARRLEEAGCAAVMPLGAPI---GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIA 215 (262)
T ss_pred HHHHHHHhcCceEeccccccc---cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhh
Confidence 479999999998772211111 1122345667788888888999999999999999999999 6999999988764
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0013 Score=58.58 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCCEEEEe--cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEE
Q 023070 8 DRPLFVQF--CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi--~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vK 82 (287)
..|+++-+ +..+++.+.+.++ +++.|+++|.|-=+..- .+.+..|..-+-.++...+.+++++++.+ .++.|=
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~--k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~Ii 146 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGP--KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVII 146 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC--ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEE
Confidence 46777654 3346778888776 45679999999644321 12233344445567777777777766543 244444
Q ss_pred ec-----CC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec--CC--CCHHHH
Q 023070 83 IR-----VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NV--RHMEDV 152 (287)
Q Consensus 83 iR-----~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG--gI--~s~~da 152 (287)
-| .+ ...+++++-++...++|+|.+-+++.+ +.+.++++.+.++.||.++- +- .+.+++
T Consensus 147 ARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l 215 (243)
T cd00377 147 ARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAEL 215 (243)
T ss_pred EEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Confidence 44 23 467889999999999999999998553 55888999999999988763 22 244444
Q ss_pred HHHHHhcCccEEEEehhhh
Q 023070 153 QKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l 171 (287)
. +.|+..|.+|-.++
T Consensus 216 ~----~lG~~~v~~~~~~~ 230 (243)
T cd00377 216 A----ELGVRRVSYGLALL 230 (243)
T ss_pred H----HCCCeEEEEChHHH
Confidence 3 36999999886543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00076 Score=63.19 Aligned_cols=122 Identities=12% Similarity=0.142 Sum_probs=96.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+-++ .++.||..+.+..| .+++.-.+.++++++.+ ++.+.+...-+|+..+++++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 6776665554 66789999999754 13455677888888877 47788888888999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++ ++.- .+.|++..+++++. +++||.+.=.+.+..++.++++...+|.|++
T Consensus 202 ~~~l~~~~~~~~-------EeP~---~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV---SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHhCcchh-------hCCC---ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 999999888665 2211 13578899999999 8899999888999999999999777888875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=60.00 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHH-HcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAARR-VEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~~-~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+. .+.+...++. ++. .+. |-||+ .|.. ...-+.||.|-..+ +.+...+
T Consensus 41 ~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-V~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~ 119 (286)
T PRK06801 41 ERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIP-VVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTRE 119 (286)
T ss_pred HCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3579999997643 3555555553 332 332 55664 2332 12234555544432 2233333
Q ss_pred HHHHHhhccCCcEEEEecC-C-CC------------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-PN------------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~~------------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
+++..+ ..+++|-.-+.. | .+ ..+..+..+.+++.|+|++.+.=.+..+.+......+++.++++
T Consensus 120 v~~~a~-~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i 198 (286)
T PRK06801 120 VVKMCH-AVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAI 198 (286)
T ss_pred HHHHHH-HcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHH
Confidence 433332 235555433322 1 00 11223333334479999998854444333332224799999999
Q ss_pred HhhCCCcEEEecC--CCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 133 KNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 133 ~~~~~ipVi~nGg--I~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.+++|++.-|| |. .+++.++++ .|++.|-+++.+.
T Consensus 199 ~~~~~~PLVlHGGSgi~-~e~~~~~i~-~Gi~KINv~T~~~ 237 (286)
T PRK06801 199 HQQTGLPLVLHGGSGIS-DADFRRAIE-LGIHKINFYTGMS 237 (286)
T ss_pred HHhcCCCEEEECCCCCC-HHHHHHHHH-cCCcEEEehhHHH
Confidence 9999999999998 86 588888888 6999999998774
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00026 Score=62.07 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+....+.|+|+|.+.+-... ......+..++.++++++.+++||++-||| +++++.++++ .|++||.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~-tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-TGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEECCCCCC-CCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-hCCCEEEEhHHhhCCCC
Confidence 34456799999999765322 111122345778888888889999999999 7899999998 69999999999986555
Q ss_pred c
Q 023070 176 L 176 (287)
Q Consensus 176 l 176 (287)
.
T Consensus 201 p 201 (221)
T PRK06512 201 P 201 (221)
T ss_pred H
Confidence 3
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=61.27 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=54.9
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.+.+.|+|++.+.+-..........+..|+.+.++++..++||++-||| +++++.++.+ .|++||.+-+++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 667778999999998765443322223567899999999999999999999 6899998887 699999988763
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0018 Score=59.40 Aligned_cols=134 Identities=23% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 95 (287)
.+.++..+.|++..+ +-+.|.|-.-- + --.++.|+..+.+-.+.+.+. ++-+.+-+ .+....
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEvi~-------e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc------~~d~~~ 210 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEVLG-------D--AKTLYPDMVETLKATEILVKE-GFQVMVYC------SDDPIA 210 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcC-------C--CCCcccCHHHHHHHHHHHHHC-CCEEEEEe------CCCHHH
Confidence 578888888887654 45776665311 1 123445555544444444221 33332222 122456
Q ss_pred HHHHHHcCCCEEEEec-cCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 96 AKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++++++.|+ +.|-+ ...-+ ...+-.+.+.++.+.+..++||+..+||.+++|+..+++ .|||+|.+.+|...
T Consensus 211 a~~l~~~g~--~avmPl~~pIG--sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~ 283 (326)
T PRK11840 211 AKRLEDAGA--VAVMPLGAPIG--SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHhcCC--EEEeecccccc--CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceecc
Confidence 889999999 43432 11111 111234778899999989999999999999999999999 69999999998864
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.6e-06 Score=75.66 Aligned_cols=133 Identities=25% Similarity=0.356 Sum_probs=107.8
Q ss_pred EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC
Q 023070 37 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 116 (287)
Q Consensus 37 IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~ 116 (287)
.++|++||.......+.+...+..+..+..+.+..++..+.|+ .|.|+-.+..++.++++.+++.+ .+.+|+|....
T Consensus 290 ~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~ 366 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFD 366 (477)
T ss_pred hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccc
Confidence 5677999998888887788888888888899998888888888 89999888889999999999998 56778776444
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+..+ ++.|+.++.+.....+|+++||.+....+- . .+++..||..++...+-.+|.
T Consensus 367 r~~~--pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~ 422 (477)
T KOG2334|consen 367 RPTD--PAKWDTPKMVLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWS 422 (477)
T ss_pred ccCC--CcCCCCHHHHHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccC
Confidence 4344 678888888877788999999999866653 2 357888999999987777665
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0032 Score=55.19 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC-C--CCcccc-HHHHHHHHhhC-C
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-G--KKFRAD-WNAIKAVKNAL-R 137 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~-~--~~~~~~-~~~i~~i~~~~-~ 137 (287)
.+.+.++...+ .++.+.+=+ + + .+-++.+.+.|.++|.+-++...+.. . ...+.. -+.++.+++.. +
T Consensus 102 e~~~~v~~a~~-~Gl~~I~~v--~-~----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~ 173 (223)
T PRK04302 102 DIEAVVERAKK-LGLESVVCV--N-N----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPD 173 (223)
T ss_pred HHHHHHHHHHH-CCCeEEEEc--C-C----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCC
Confidence 35556665544 354444421 1 1 12344566788888877554221110 0 000111 23345566543 6
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+||++.|||++++++..+++ .|+|||.+|++++.-+++..
T Consensus 174 ~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa~l~~~~~~~ 213 (223)
T PRK04302 174 VKVLCGAGISTGEDVKAALE-LGADGVLLASGVVKAKDPEA 213 (223)
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCCEEEEehHHhCCcCHHH
Confidence 99999999999999999887 59999999999997766544
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0003 Score=75.28 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-----CccccHHH-HHHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADWNA-IKAV 132 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-----~~~~~~~~-i~~i 132 (287)
.++-+.++|..++... +.||+||+-.+.... .++.-+.++|+|.|+|.|......... ....-|+. +.++
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg---~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~ 1055 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVG---TIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAET 1055 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCcc---HHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHH
Confidence 4566888888888876 689999987653332 244456789999999987644321100 00122333 3333
Q ss_pred Hhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+. + ++.+++.||++|+.|+.+++. .|||.|.+||++|---.
T Consensus 1056 ~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a-LGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1056 HQALVANGLRHKIRLQVDGGLKTGLDVIKAAI-LGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH-cCCcccccchHHHHHcC
Confidence 222 2 489999999999999999998 69999999999875433
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=59.61 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHH-HcC-CCC-EEEEec-cCChh---hhhcCcccccccC----ChHHHHHHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARR-VEP-YCD-YVDINL-GCPQR---IARRGNYGAFLMD----NLPLVKSLVE 69 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~-~~~-g~d-~IdiN~-gcP~~---~~~~~~~G~~l~~----~~~~~~~iv~ 69 (287)
...|+|+|+.-.. .+.+...++. ++. ++. -|-||+ .|... ..-+.++.+-.++ ..+...++.+
T Consensus 41 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~ 120 (293)
T PRK07315 41 KKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAK 120 (293)
T ss_pred HCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence 3679999996532 3444444442 332 222 266665 34432 2334555544433 1222333333
Q ss_pred HHhh---ccCCcEEEEecC--C-C------ChhhHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHH
Q 023070 70 KLAL---NLNVPVSCKIRV--F-P------NLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 70 ~v~~---~~~~pv~vKiR~--g-~------~~~~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i 132 (287)
++++ ..+++|-..+.. | . +.-...+-|+.+.+.|+|+|.+ ||..... +...+++.++++
T Consensus 121 ~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~----~k~l~~e~L~~i 196 (293)
T PRK07315 121 EVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPEN----WEGLDLDHLEKL 196 (293)
T ss_pred HHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCC----CCcCCHHHHHHH
Confidence 3332 346777655432 2 1 1102234455566899999966 4443321 114789999999
Q ss_pred HhhC-CCcEEEecC--CCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 133 KNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 133 ~~~~-~ipVi~nGg--I~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++.+ ++|+++-|| |. .+++.++++ .|++.|-+++.+..+
T Consensus 197 ~~~~~~iPlVlhGGSGi~-~e~~~~~i~-~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 197 TEAVPGFPIVLHGGSGIP-DDQIQEAIK-LGVAKVNVNTECQIA 238 (293)
T ss_pred HHhccCCCEEEECCCCCC-HHHHHHHHH-cCCCEEEEccHHHHH
Confidence 9998 599999999 85 588999998 699999999998863
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=62.36 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
+.+++++.+-++ .++.||..+.+..| .+++.-.+.++++++.+ ++.+.+...-+|+.+++.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 557787766555 66789999999764 24555677888888877 467777777789999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++.++.+| ++.- .+.|++..+++++.+ ++||.+.-.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~i-------EEP~---~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWI-------EEPT---SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEE-------ECCC---CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 99999999998776 2211 135788889999887 699988778999999999998777888875
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=61.95 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=106.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+++.+|+++.+-++ ..+.||..+.+..|-+.. . .++ ..+++.-.+.++++++.+ ++.+.+..
T Consensus 112 ~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~--~---~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDa 184 (382)
T PRK14017 112 DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ--Y---IDS--PRKVDAAVARVAAVREAVGPEIGIGVDF 184 (382)
T ss_pred ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc--c---ccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 3446666666778998865554 667799999997531110 0 000 123556678888888877 47788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+.+| ++.- .+.|++..+++++.+.+||.+.=.+.++.++..+++...+|.
T Consensus 185 N~~w~~~~A~~~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~ 254 (382)
T PRK14017 185 HGRVHKPMAKVLAKELEPYRPMFI-------EEPV---LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDI 254 (382)
T ss_pred CCCCCHHHHHHHHHhhcccCCCeE-------ECCC---CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCe
Confidence 778999999999999999988877 2211 135788899999999999999889999999999999877888
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
+.+-
T Consensus 255 v~~d 258 (382)
T PRK14017 255 IQPD 258 (382)
T ss_pred EecC
Confidence 8764
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=56.60 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh-----hhhcC-------cccccccCChHHHHHHHHH----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR-----IARRG-------NYGAFLMDNLPLVKSLVEK---- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~-----~~~~~-------~~G~~l~~~~~~~~~iv~~---- 70 (287)
..|++.=|.+.++++....++. ++.|+..+||-+-.|.. ..++. .-|+.-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 4678888999999999999995 56689999999876651 11111 0122222344444333322
Q ss_pred -------------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC
Q 023070 71 -------------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 137 (287)
Q Consensus 71 -------------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 137 (287)
.+ ..++|+.- |- ....+ +....++|+|+|-+.+.. ....++++.++...+
T Consensus 92 ivsP~~~~~v~~~~~-~~~i~~iP----G~--~T~~E-~~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p 154 (213)
T PRK06552 92 IVSPSFNRETAKICN-LYQIPYLP----GC--MTVTE-IVTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLP 154 (213)
T ss_pred EECCCCCHHHHHHHH-HcCCCEEC----Cc--CCHHH-HHHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCC
Confidence 11 11222221 11 11222 233457999999885421 122577888887765
Q ss_pred -CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 138 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 138 -ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+|+++.|||+ .+.+.++++ .|+++|.+|..++
T Consensus 155 ~ip~~atGGI~-~~N~~~~l~-aGa~~vavgs~l~ 187 (213)
T PRK06552 155 QVNVMVTGGVN-LDNVKDWFA-AGADAVGIGGELN 187 (213)
T ss_pred CCEEEEECCCC-HHHHHHHHH-CCCcEEEEchHHh
Confidence 9999999996 799999998 6999999999885
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0017 Score=65.74 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=87.8
Q ss_pred HHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----
Q 023070 24 LNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F---- 86 (287)
Q Consensus 24 ~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g---- 86 (287)
.+.|+ ..+.|+++|.+. +....||+++ +-+..+++.+++||-.|==+ |
T Consensus 73 ~~~a~~y~~~GA~aiSVl-------Te~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADav 137 (695)
T PRK13802 73 AALAREYEQGGASAISVL-------TEGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLV 137 (695)
T ss_pred HHHHHHHHHcCCcEEEEe-------cCcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEe
Confidence 33344 345578888886 2233344443 33455566677888777311 1
Q ss_pred ------CChhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEe
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLAN 143 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~n 143 (287)
.+.++..++.+...+.|.+.| -||...- +.+.-.+...|.+...++...+ ++.+|+.
T Consensus 138 LLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsE 217 (695)
T PRK13802 138 LLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAE 217 (695)
T ss_pred ehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEc
Confidence 122344555556666666555 4553210 0011112246777777777765 4678999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+||.+++|+..+.+ .|+|+|.||.++|..|+.-..+
T Consensus 218 SGI~~~~d~~~l~~-~G~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 218 SGVFGAVEVEDYAR-AGADAVLVGEGVATADDHELAV 253 (695)
T ss_pred CCCCCHHHHHHHHH-CCCCEEEECHHhhCCCCHHHHH
Confidence 99999999998887 6999999999999998854433
|
|
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=61.97 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
.++.+.++++.+. .||+.+.+..|++... .-.+.++++|+++ ++.+.+...-+|+..+++.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777878887655 6999999999887632 4567778888877 47788888889999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++ ++.- .+-|++..+++++.+.+||.+.=-+.|..|+.++++...+|.|++
T Consensus 208 ~~~l~~~~l~~i-------EeP~---~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWI-------EEPL---PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceE-------ECCC---CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 999999997766 2211 135788899999987899999999999999999999766888765
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=56.87 Aligned_cols=146 Identities=19% Similarity=0.286 Sum_probs=94.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
.+.++|...|...+.+-.+.++.|+|.+-+-.- . +.+..+.-+--++++++++.+++|+.|-+-.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------D----G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv---- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------D----GHFVPNLTLSPFFVSQVKKLASKPLDVHLMV---- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------c----CccCCCcccCHHHHHHHHhcCCCCeEEEEEe----
Confidence 377899999999999999877778887555421 1 1112222333557777877777887776533
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCC-CC-------------------------------------------cCCCCcc--
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTR-DE-------------------------------------------KDGKKFR-- 123 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~-~~-------------------------------------------~~~~~~~-- 123 (287)
.+...+++.+.++|++.|++|.-.. .. ..++.|.
T Consensus 69 ~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~f 148 (229)
T PRK09722 69 TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPF 148 (229)
T ss_pred cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhc
Confidence 3566778888889999999985421 00 0011111
Q ss_pred --ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh-hhh
Q 023070 124 --ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES-LLE 172 (287)
Q Consensus 124 --~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~-~l~ 172 (287)
.-++.|+++++. .++.|.+-|||+ .+.+.++.+ .|||.+.+|++ +..
T Consensus 149 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~-aGad~~V~Gss~iF~ 203 (229)
T PRK09722 149 IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME-AGADVFIVGTSGLFN 203 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEEChHHHcC
Confidence 112344544432 246688999997 678888887 69999999976 443
|
|
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0024 Score=57.30 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=98.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
...|+..-+.+.+++...++.+.++.||..+.+.+| ..+++.-.+.++++++.+ ++.+.+...
T Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 71 NRIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred cCcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 345666667777776665655566779999999865 123455567777887776 456677766
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++..+++.+++.++.+| ++.-. +.|++.+++++ .++||.+.=.+.++.++.++++...+|.|
T Consensus 136 ~~w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v 203 (263)
T cd03320 136 GGWSLEEALAFLEALAAGRIEYI-------EQPLP---PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGAL 203 (263)
T ss_pred CCCCHHHHHHHHHhhcccCCceE-------ECCCC---hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEE
Confidence 78999999999999999888766 22111 34677777776 78999998899999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 204 ~~ 205 (263)
T cd03320 204 VL 205 (263)
T ss_pred EE
Confidence 77
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0029 Score=56.30 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=75.2
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~ 131 (287)
-||..+.+.+++..+ .+ .+.||.+|-....+.++....++.+.+.|..-|.+.-|-......... ..|+..+..
T Consensus 104 Igs~~~~n~~LL~~v----a~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~ 178 (250)
T PRK13397 104 VGARNMQNFEFLKTL----SH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPI 178 (250)
T ss_pred ECcccccCHHHHHHH----Hc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHH
Confidence 377778886665544 32 489999997767788899999999999999766553322222111111 467888889
Q ss_pred HHhhCCCcEEEe----cCCCC--HHHHHHHHHhcCccEEEEeh
Q 023070 132 VKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 132 i~~~~~ipVi~n----GgI~s--~~da~~~l~~~gad~VmiGR 168 (287)
+++..++||++. +|.+. +.-+..++. .||||+||=+
T Consensus 179 lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA-~GAdGl~IE~ 220 (250)
T PRK13397 179 IQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKA-VGANGIMMEV 220 (250)
T ss_pred HHHHhCCCeEECCCCCCcccchHHHHHHHHHH-hCCCEEEEEe
Confidence 998889999874 55543 233455555 6999999864
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0029 Score=58.53 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=84.3
Q ss_pred HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC------------C----------
Q 023070 30 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------------F---------- 86 (287)
Q Consensus 30 ~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~------------g---------- 86 (287)
.+.|+++|.+.- -...|+|+ .+-++.+++. +++||-.|==+ |
T Consensus 149 e~~GA~aISVLT-------d~~~F~Gs--------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai 213 (338)
T PLN02460 149 EKGGAACLSVLT-------DEKYFQGS--------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV 213 (338)
T ss_pred HhCCCcEEEEec-------CcCcCCCC--------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh
Confidence 445777777751 22334443 2345667776 78999888311 1
Q ss_pred CChhhHHHHHHHHHHcCCCEE-EEeccCC-----C--C--------cCCCCccccHHHHHHHHh-----hC---CCcEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR-----D--E--------KDGKKFRADWNAIKAVKN-----AL---RIPVLA 142 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I-~vh~rt~-----~--~--------~~~~~~~~~~~~i~~i~~-----~~---~ipVi~ 142 (287)
.+..+..++.+...+.|.+.+ -||...- . + +.-.+...|++...++.. .+ ++.+|+
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~Vs 293 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVG 293 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEE
Confidence 122344556666666666555 4553210 0 0 011122467777777766 22 355789
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.+||+|++|+..+.+ .|+|+|.||.++|..|+.-..++
T Consensus 294 ESGI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l~ 331 (338)
T PLN02460 294 ESGLFTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGIA 331 (338)
T ss_pred CCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHHH
Confidence 999999999998887 69999999999999988655443
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=60.24 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+++++.+.++ .++.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++++
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~ 223 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIA 223 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 36776765554 667899999997651 23455567788888876 5778888888899999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc----cEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC----EGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga----d~Vmi 166 (287)
+++.+++.++.+| ++.- .+.|++..+++++.+++||.+.=.+.++.++.++++...+ |.+++
T Consensus 224 ~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 224 YAKALAPYGLRWY-------EEPG---DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred HHHHhhCcCCCEE-------ECCC---CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 9999999988777 2211 1357889999999999999998899999999999986555 77765
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0025 Score=54.40 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=91.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh-----h---h---cCcccccccCChHHHHHHHHH-----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI-----A---R---RGNYGAFLMDNLPLVKSLVEK----- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~-----~---~---~~~~G~~l~~~~~~~~~iv~~----- 70 (287)
..|++.=|.+.++++..+.++. ++.|++.|++-+-.|... . + ..+.|..+.. +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEE
Confidence 4577777899999999998884 567899999975333210 0 0 1112222221 332222221
Q ss_pred -----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 71 -----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 71 -----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+++..+++.. +| ..+..+ +....+.|+|++-+..- . . ..-.++++.++..+ ++
T Consensus 89 ~~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt---~--~---~~G~~~l~~~~~~~~~i 153 (187)
T PRK07455 89 FTPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV---Q--A---VGGADYIKSLQGPLGHI 153 (187)
T ss_pred ECCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC---C--c---ccCHHHHHHHHhhCCCC
Confidence 1111122211 23 122223 44556799999988431 0 0 12357899999887 69
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|+++.||| +++++.++++ .|+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHH-CCCeEEEEehhccc
Confidence 99999999 6899999999 69999999988763
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0075 Score=55.91 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc----ccHHHHHHHHhhCC
Q 023070 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALR 137 (287)
Q Consensus 62 ~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~~ 137 (287)
+...+.+...++..+.||.+-+. |.+.++..++++.++++|+|+|.++-..........+. .-.+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 44444444444455789988873 55667888999999999999999975421111111111 11467888888889
Q ss_pred CcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 138 IPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 138 ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+||++ +.++.+..++.+.+.+.|+|+|.+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 99884 4566677778777777899998663
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0031 Score=59.29 Aligned_cols=126 Identities=11% Similarity=0.130 Sum_probs=96.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-....+.+++.+.+.++ ..+.||..+.+.. .+.++++++.+ ++.+.+..+
T Consensus 115 ~v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN 171 (361)
T cd03322 115 GIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVH 171 (361)
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECC
Confidence 344444455667777755444 5667999888853 56688888877 467788877
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++..+++.+++.++.++ ++.- .+.+++.++++++.+++||.+.=.+.++.++..+++...+|.+
T Consensus 172 ~~w~~~~A~~~~~~l~~~~l~~i-------EeP~---~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~ 241 (361)
T cd03322 172 HRLTPNQAARFGKDVEPYRLFWM-------EDPT---PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYI 241 (361)
T ss_pred CCCCHHHHHHHHHHhhhcCCCEE-------ECCC---CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEE
Confidence 78999999999999999888777 2211 1357888999999999999998889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 242 ~~ 243 (361)
T cd03322 242 RT 243 (361)
T ss_pred ec
Confidence 66
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0039 Score=58.15 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCCEEEEe-cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQF-CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi-~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-... ...+++.+.+-++ .++.||..+.+..|... .. + ..+++.-.+.++++++.+ ++.+.+..
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~----~~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGP----SD--G---HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----Cc--c---hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 34554443 2458888866554 66789999999865310 00 0 023456677888888877 46777877
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
..+|+.+++..+++.+++.++.+| ++.- .+.|++..+.+++.+++||.+.=.+.+..++.++++...+|.
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWI-------EEPL---IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCccc-------cCCC---CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCE
Confidence 778999999999999999887655 2211 135788899999999999999888999999999999777888
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 249 i~~ 251 (341)
T cd03327 249 LQP 251 (341)
T ss_pred Eec
Confidence 876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00063 Score=58.76 Aligned_cols=142 Identities=15% Similarity=0.365 Sum_probs=89.7
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEe--cc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDIN--LG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN--~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.++|...|+..+.+..+.++ .|+|.+-+- -| +|+ .-+--++++++++.+++|+.+-+-.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn---------------~~~g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN---------------LTFGPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS---------------B-B-HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc---------------ccCCHHHHHHHhhcCCCcEEEEeee
Confidence 678899999999999999775 588864443 22 332 2233566777888888898888743
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF 122 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~ 122 (287)
.++..+++.+.++|++.|++|...... ..++.|
T Consensus 67 ----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 ----ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp ----SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred ----ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 234456777788888888888532110 011222
Q ss_pred c----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 123 R----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 123 ~----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
. .-++.|+++++. .++.|.+-|||+. +.+..+.+ .|||.+.+|+++..+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~-aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVE-AGADIFVAGSAIFKA 200 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHH-HT--EEEESHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHH-cCCCEEEECHHHhCC
Confidence 1 124445555443 3588999999965 78888887 599999999987653
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=60.15 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=101.0
Q ss_pred ecCCCHHHHHH-HHHHHcCCCCEEEEeccCChh---hhhcCcccc------cc----------cCChHHHHHHHHHHhhc
Q 023070 15 FCANDPEILLN-AARRVEPYCDYVDINLGCPQR---IARRGNYGA------FL----------MDNLPLVKSLVEKLALN 74 (287)
Q Consensus 15 i~g~~~~~~~~-aA~~~~~g~d~IdiN~gcP~~---~~~~~~~G~------~l----------~~~~~~~~~iv~~v~~~ 74 (287)
+.+.+++++.+ |.+.++.||..+.|.+|-|-. .....+.|. .. .+.++...+.++++++.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 45667777754 445667799999998874320 000000000 00 01224456789999988
Q ss_pred c--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 75 L--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 75 ~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
+ ++.+.+...-+|+.+++..+++.+++.++.+|- +.-. +.+++..+++++.+++||.+.=.+.++.++
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------eP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~ 272 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------DPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDC 272 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------CCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHH
Confidence 7 467888877789999999999999998887772 2111 357888999999999999998889999999
Q ss_pred HHHHHhcCccEEEE
Q 023070 153 QKCLEETGCEGVLS 166 (287)
Q Consensus 153 ~~~l~~~gad~Vmi 166 (287)
.++++...+|.|.+
T Consensus 273 ~~li~~~a~dii~~ 286 (404)
T PRK15072 273 KQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHcCCCCEEec
Confidence 99999877898886
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=57.91 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+..+.+.|+|++.+.+-....... ...+..|+.++++.+. .++||++-|||. .+++.++++ .|++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~-~Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLA-TGVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHH-cCCCEEEEhhHhhCC
Confidence 455667899999997654433221 2224567888888776 589999999995 799999998 699999999999866
Q ss_pred ccchh
Q 023070 174 PALFA 178 (287)
Q Consensus 174 P~lf~ 178 (287)
++.-.
T Consensus 193 ~d~~~ 197 (211)
T PRK03512 193 ADWRA 197 (211)
T ss_pred CCHHH
Confidence 65433
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0055 Score=56.33 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=94.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g~ 87 (287)
+....|...+++.+.+.+.. +.||..+.+..| . .+++.-.+.++++++.++ +.+.+...-+|
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 102 YYVALLPAGDPALLLLRSAK-AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred cceeeccCCCHHHHHHHHHH-hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 44555666778877765554 669999988754 1 145555677778877663 55666666689
Q ss_pred ChhhHHHHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+..++.++++.+++ .++.+| ++ |.+.+ +.++.+++.+++||.+.=.+.++.|+.++++...+|.|
T Consensus 166 ~~~~A~~~~~~l~~~~~~~i~~i-------Eq----P~~~~-~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i 233 (307)
T TIGR01927 166 SPDEAQQFLKALDPNLRGRIAFL-------EE----PLPDA-DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGAL 233 (307)
T ss_pred CHHHHHHHHHhcccccCCCceEE-------eC----CCCCH-HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceE
Confidence 99999999999997 667666 22 11222 67888988999999999999999999999987566777
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 234 ~i 235 (307)
T TIGR01927 234 VI 235 (307)
T ss_pred EE
Confidence 66
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0066 Score=57.15 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=97.7
Q ss_pred CCCEEEEecCCCHHHH-HHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEIL-LNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~-~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-..+...++++. .++.+..+ .||..+.+..| . .+++.-.+.++++++.+ ++.+.+..
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~Da 194 (368)
T TIGR02534 130 SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDV 194 (368)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3455555555665544 44444453 69999998754 1 23555567778887776 45666776
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+.+++.++++.+++.++.+| ++.-. +.|++.++++++.+++||.+.-.+.++.++.++++..++|.
T Consensus 195 N~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~ 264 (368)
T TIGR02534 195 NAAWDERTALHYLPQLADAGVELI-------EQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKASAADV 264 (368)
T ss_pred CCCCCHHHHHHHHHHHHhcChhhe-------ECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCE
Confidence 668999999999999999887655 22111 34688889999999999999889999999999999878998
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
+.+
T Consensus 265 ~~~ 267 (368)
T TIGR02534 265 FAL 267 (368)
T ss_pred EEE
Confidence 876
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0009 Score=59.54 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCHH-HHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCC---hHHHHHHHHHHhhc-c-CCcE
Q 023070 7 EDRPLFVQFCANDPE-ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDN---LPLVKSLVEKLALN-L-NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~-~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~---~~~~~~iv~~v~~~-~-~~pv 79 (287)
.+.|++.=+++.||- ++..-.+.+ +.||.+|. || |.--...+.|...|... .++=.++++..++. . .+|.
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--E
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeee
Confidence 468999999999995 344444444 45999884 65 65333344444444332 12223333333322 1 1222
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccH----HHHHHHHh---hC--CCc-EEEecCCCC
Q 023070 80 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADW----NAIKAVKN---AL--RIP-VLANGNVRH 148 (287)
Q Consensus 80 ~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~----~~i~~i~~---~~--~ip-Vi~nGgI~s 148 (287)
.. +. +-++.+.++|+|.|++| |.|..+..+......+ +.+.++.+ .+ ++- ++..|-|.+
T Consensus 157 vf------~~----e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 157 VF------NE----EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp E-------SH----HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred ec------CH----HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 11 22 33566668999999999 4454432221111222 22333333 22 343 445566999
Q ss_pred HHHHHHHHHhcC-ccEEEEehhh
Q 023070 149 MEDVQKCLEETG-CEGVLSAESL 170 (287)
Q Consensus 149 ~~da~~~l~~~g-ad~VmiGR~~ 170 (287)
|+|++.+++.+. |+|..-|..+
T Consensus 227 p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 227 PEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHHHHHHHhcCCCCCEEecccch
Confidence 999999999886 9998776543
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0096 Score=51.51 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
+.|++.=|.+.++++..+.++. ++.|++.|||.+-.|.. .+.++.+++.. ++.|.+-.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a------------------~~~i~~l~~~~~~~~vGAGT-- 66 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVA------------------LDAIRLLRKEVPDALIGAGT-- 66 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccH------------------HHHHHHHHHHCCCCEEEEEe--
Confidence 5678888999999999999995 56689999999765542 22333333222 11111110
Q ss_pred CCChhhHHHHHHHHH-----------------------------------------HcCCCEEEEeccCCCCcCCCCccc
Q 023070 86 FPNLQDTIKYAKMLE-----------------------------------------DAGCSLLAVHGRTRDEKDGKKFRA 124 (287)
Q Consensus 86 g~~~~~~~~~a~~l~-----------------------------------------~~G~~~I~vh~rt~~~~~~~~~~~ 124 (287)
=.+ .+-++.+. ++|++.+-+.+-.. .
T Consensus 67 Vl~----~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~---------~ 133 (204)
T TIGR01182 67 VLN----PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEV---------S 133 (204)
T ss_pred CCC----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchh---------c
Confidence 001 11122233 34444444432110 1
Q ss_pred c-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 125 D-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 125 ~-~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
. ..+++.++.-. ++|++..|||. ++.+.+.++ .|+.+|.+|+.++....
T Consensus 134 GG~~yikal~~plp~i~~~ptGGV~-~~N~~~~l~-aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 134 GGVKMLKALAGPFPQVRFCPTGGIN-LANVRDYLA-APNVACGGGSWLVPKDL 184 (204)
T ss_pred CCHHHHHHHhccCCCCcEEecCCCC-HHHHHHHHh-CCCEEEEEChhhcCchh
Confidence 1 36788887654 79999999995 599999999 59999999988875443
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0079 Score=56.52 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCEEEEecCCCHHHHH-HHHHHHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 9 RPLFVQFCANDPEILL-NAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~-~aA~~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.|+-..+...+++++. ++.+.+..| |..+.+..|- .+++.-.+.++++++.+ ++.+.+...
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4554445445555544 455567778 9999998641 13444456677777776 356777777
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++.++++.+++.++.+| ++.-. +.+++.++++++..++||.+.=.+.++.++.++++...+|.+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELI-------EQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCccee-------eCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 78999999999999999987655 22111 247888999999999999988889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 267 ~~ 268 (365)
T cd03318 267 SL 268 (365)
T ss_pred EE
Confidence 65
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.005 Score=56.34 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHHHHHHHhhccCCcEEEEe-cCCC------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 64 VKSLVEKLALNLNVPVSCKI-RVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKi-R~g~------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
+.+++++. ...++|+.+=+ -.|. +.+.....++...+.|+|.|-+---+... ..+-+.++++.+.+
T Consensus 156 l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~------~g~~e~f~~vv~~~ 228 (304)
T PRK06852 156 AAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG------ANPAELFKEAVLAA 228 (304)
T ss_pred HHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC------CCCHHHHHHHHHhC
Confidence 33444432 34589987522 1132 22234455677789999999775222111 13457788888888
Q ss_pred -CCcEEEecCCC-CHHHHHH----HHHhcCccEEEEehhhhhCcc
Q 023070 137 -RIPVLANGNVR-HMEDVQK----CLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 -~ipVi~nGgI~-s~~da~~----~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||+..||=. +.+++.+ .++..|+.||.+||=....|.
T Consensus 229 g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 229 GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 89999888866 4444443 444369999999998887654
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0062 Score=57.99 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=92.4
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+-++ .++ .||..+.|..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 6787777665 444 599999997541 23455567788888776 46677777778999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++ ++.++ ++ |.+ |++.++++++.+++||.+.-.+.+.+++.++++...+|.+++
T Consensus 233 ~~~l~~-~l~~i-------Ee----P~~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~ 290 (395)
T cd03323 233 AKELEG-VLAYL-------ED----PCG-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLA 290 (395)
T ss_pred HHhcCc-CCCEE-------EC----CCC-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEee
Confidence 999998 77665 22 223 788899999999999998878999999999999877888854
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=61.05 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.+.+.|+|++.+.+-..........+..++.++++++..++||++-||| +++++.++++ +|+++|.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hCCCEEEEEEEe
Confidence 455677899999997654433221122456888999998899999999999 8899999888 699999887654
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=55.09 Aligned_cols=143 Identities=13% Similarity=0.235 Sum_probs=85.4
Q ss_pred CCCCEEEEecCCC-----H--HHHHHHH-HHHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC
Q 023070 7 EDRPLFVQFCAND-----P--EILLNAA-RRVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~--~~~~~aA-~~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~ 76 (287)
.+.|+++++.++. + ..+.-.. +.+..|+|+|-++ +|.+... +..+.+.+++++. ...+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~-----------~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEH-----------QSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHH-HHhC
Confidence 4678999998842 1 2222222 2556688876654 5533210 0112233333332 3458
Q ss_pred CcEEEEecCCCCh---hhHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC-CHHH
Q 023070 77 VPVSCKIRVFPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-HMED 151 (287)
Q Consensus 77 ~pv~vKiR~g~~~---~~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-s~~d 151 (287)
+|+.+=...|... .+.+ ..++...+.|+|.|-+- +++ +.++++.+..++||+..||=. +.++
T Consensus 141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------YVE----EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 9988722224321 2233 34566789999999653 221 567888888899999999866 3344
Q ss_pred HHH----HHHhcCccEEEEehhhhhCcc
Q 023070 152 VQK----CLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 152 a~~----~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+ +++ .|+.||.+||=....|+
T Consensus 208 ~L~~v~~ai~-aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 208 ALEMCYQAID-EGASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHHH-cCCceeeechhhhccCC
Confidence 443 444 69999999998876654
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00023 Score=62.50 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 128 ~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++..+...++|+|+.|||+|.+++.++++ .|||.|++|..+..||+
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~-aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAE-AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHC-TTSSEEEESCHHHHHH-
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHH-CCCCEEEECCEEEEcch
Confidence 344444456899999999999999999998 59999999999999998
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0076 Score=53.75 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEec--c--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~--g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
..|+.++|...|...+.+-.+.++. |+|.+-+-. | +|+ .-+--++++++++ ++|+.|-
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ---------------FTVGPWAVGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc---------------cccCHHHHHHhcc--CCCeeEE
Confidence 4689999999999999999987765 888755542 2 232 1122334444443 4565555
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC------------C----------c-----------------------
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E----------K----------------------- 117 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~------------~----------~----------------------- 117 (287)
+-. .+...+++.+.++|++.|++|.-... + +
T Consensus 82 LMV----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~ 157 (254)
T PRK14057 82 LMV----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEV 157 (254)
T ss_pred eee----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCE
Confidence 422 34556677777788888888742100 0 0
Q ss_pred -------CCCCcc----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 118 -------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 118 -------~~~~~~----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++.|. .-++-|+++++. .++.|.+-|||+ .+.+.++.+ .|||.+++|++++.+++
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~-aGad~~V~GSalF~~~d 229 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIA-QGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 011111 112334444432 246689999995 578888887 69999999998876554
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.012 Score=50.89 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+++++.-+=..|...+. ++ ..++|+|.+-+-+-. +..-+...++..+ ..+.-+.+-+-.-
T Consensus 56 d~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~-~~~~~v~iDl~~~ 116 (217)
T COG0269 56 DKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAK-EYGKEVQIDLIGV 116 (217)
T ss_pred CCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHH-HcCCeEEEEeecC
Confidence 44455555444443332 33 245688888775322 3344455555443 3456666665444
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
|+ ..+-++.+++.|++.+.+|-..-.|..+. ...|+.+..+++..+ .+|-..||| +++++..+.. .|+|.|
T Consensus 117 ~~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~-~~~~iv 189 (217)
T COG0269 117 WD---PEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKG-IGADIV 189 (217)
T ss_pred CC---HHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhc-CCCCEE
Confidence 44 44556777789999999994433333222 233567777777654 789999999 5899998888 589999
Q ss_pred EEehhhhhCcc
Q 023070 165 LSAESLLENPA 175 (287)
Q Consensus 165 miGR~~l~nP~ 175 (287)
.+||++-.-.+
T Consensus 190 IvGraIt~a~d 200 (217)
T COG0269 190 IVGRAITGAKD 200 (217)
T ss_pred EECchhcCCCC
Confidence 99998865433
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=57.05 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+..++|+.+++.|+++|.+..-... . ....+.++.+++.+++||+.-|+|.+..++..+++ .|||+|.++
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~----~--~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~ 101 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKY----F--QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLI 101 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccc----c--CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEe
Confidence 3457899999999999999988643222 1 13456778888888999999999999999998888 699999988
Q ss_pred hhhhh
Q 023070 168 ESLLE 172 (287)
Q Consensus 168 R~~l~ 172 (287)
-..+.
T Consensus 102 ~~~~~ 106 (217)
T cd00331 102 VAALD 106 (217)
T ss_pred eccCC
Confidence 76654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=58.62 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=37.7
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++||++ .||.+++|+..+.+ .|+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~-~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVE-VGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHh-cCCCEEEEe
Confidence 46799999999999999888 66899999998888 699999774
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.021 Score=51.99 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCCEEEEe-cCCCHHHHHHHHHH-HcCCCCEEEEeccC-ChhhhhcCcccc---cccCChHHHHHHHHHHhhc-c--CCc
Q 023070 8 DRPLFVQF-CANDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNYGA---FLMDNLPLVKSLVEKLALN-L--NVP 78 (287)
Q Consensus 8 ~~p~~~Qi-~g~~~~~~~~aA~~-~~~g~d~IdiN~gc-P~~~~~~~~~G~---~l~~~~~~~~~iv~~v~~~-~--~~p 78 (287)
..|+++-+ .|.+|..+.+.++. ++.|+.+|.|-=.+ |. +.+.+|+ ..+-.++...+.+++++++ . +++
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~ 154 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFM 154 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCCeE
Confidence 56776554 23588888888884 56799999994321 21 1122232 2344556666666666554 3 455
Q ss_pred EEEEecC---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHH
Q 023070 79 VSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHME 150 (287)
Q Consensus 79 v~vKiR~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~ 150 (287)
|..+.-. +...+++++-++...++|+|.|-+++.. .+.+.+.++.+.+ ++|++.+.+-.-.-
T Consensus 155 IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~ 224 (285)
T TIGR02320 155 IIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------KDPDEILEFARRFRNHYPRTPLVIVPTSYYTT 224 (285)
T ss_pred EEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCC
Confidence 5555322 2357789999999999999999998321 2334555555544 46888765311111
Q ss_pred HHHHHHHhcCccEEEEehhhh
Q 023070 151 DVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 151 da~~~l~~~gad~VmiGR~~l 171 (287)
++.++-+ .|+..|..|-.++
T Consensus 225 ~~~eL~~-lG~~~v~~~~~~~ 244 (285)
T TIGR02320 225 PTDEFRD-AGISVVIYANHLL 244 (285)
T ss_pred CHHHHHH-cCCCEEEEhHHHH
Confidence 3444444 6999999985554
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0084 Score=58.01 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=83.3
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----------CC
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F----------PN 88 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g----------~~ 88 (287)
+.|+++|.+.. ....||+++ +-+..+++.+++||-.|==+ | .+
T Consensus 80 ~~gA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~ 144 (454)
T PRK09427 80 KHYASAISVLT-------DEKYFQGSF--------DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLD 144 (454)
T ss_pred HcCCeEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCC
Confidence 55677777762 223344432 23455666677888877311 1 12
Q ss_pred hhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHH
Q 023070 89 LQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMED 151 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~d 151 (287)
.++..++.+...+.|.+.+ -||...- +.+.-.+...|.+...++...+ ++.+|+-+||.|++|
T Consensus 145 ~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d 224 (454)
T PRK09427 145 DEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQ 224 (454)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHH
Confidence 2344556666666666655 5553210 0011112246777777777665 577889999999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+..+. . |+|+|.||.++|..|+.-..++
T Consensus 225 ~~~~~-~-~~davLiG~~lm~~~d~~~~~~ 252 (454)
T PRK09427 225 VRELS-P-FANGFLIGSSLMAEDDLELAVR 252 (454)
T ss_pred HHHHH-h-cCCEEEECHHHcCCCCHHHHHH
Confidence 99864 3 6999999999999998655443
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.006 Score=54.79 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=74.0
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i 132 (287)
||..+.+++++ +++. ..+.||.+|.....+.++....++.+.+.|..-|++ |..+..-........||..+..+
T Consensus 115 ~s~~~~n~~LL----~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~l 189 (260)
T TIGR01361 115 GARNMQNFELL----KEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVL 189 (260)
T ss_pred CcccccCHHHH----HHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHH
Confidence 45555555543 3333 358999999777667888989999999999976655 53232210111225799999999
Q ss_pred HhhCCCcEEE-ecCCCC-----HHHHHHHHHhcCccEEEEehhh
Q 023070 133 KNALRIPVLA-NGNVRH-----MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 133 ~~~~~ipVi~-nGgI~s-----~~da~~~l~~~gad~VmiGR~~ 170 (287)
++..++||+. ++-... +.-+..+.. .||||+||=+-+
T Consensus 190 k~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~H~ 232 (260)
T TIGR01361 190 KKETHLPIIVDPSHAAGRRDLVIPLAKAAIA-AGADGLMIEVHP 232 (260)
T ss_pred HHhhCCCEEEcCCCCCCccchHHHHHHHHHH-cCCCEEEEEeCC
Confidence 9888999999 333322 344455665 699999987544
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0048 Score=54.74 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred CCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 9 RPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.|+++-+ +|++|++..+.++ +++.|+++|.|=-+ ....+.+++++++ ++||...+.
T Consensus 74 ~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd 133 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTG 133 (240)
T ss_pred CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeC
Confidence 4676655 3456677777776 55678999888521 1234456666554 488887766
Q ss_pred CCC-----------------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC
Q 023070 85 VFP-----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 85 ~g~-----------------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
..+ ..+++++-++.++++|++.|.+.+. +.+.++++.+.+++|++++|.=.
T Consensus 134 ~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~gag~ 201 (240)
T cd06556 134 LTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIGAGS 201 (240)
T ss_pred CchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEecCc
Confidence 521 1346677788899999999998633 45788999999999999887432
Q ss_pred CHHHHHHHHHhcCccEEEEe
Q 023070 148 HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiG 167 (287)
+||+-++-
T Consensus 202 ------------~~dgq~lv 209 (240)
T cd06556 202 ------------GTDGQFLV 209 (240)
T ss_pred ------------CCCceEEe
Confidence 78887654
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0074 Score=54.51 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ +++.|+++|-+|- ..|-...-..+.-.++++.+++.+ ++||.+.+.. .+..++++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 83 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIE 83 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHH
Confidence 37778888777 4567999998882 234444445555566666666554 5888888644 34578999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi------~nGgI~s~~da~~~l~ 157 (287)
+++.+++.|++++.+..-.... .+...-+++++.+.+.+++||+ .+|---+++.+.++.+
T Consensus 84 ~a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 84 LARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 9999999999999987543221 1111234667788888889987 3466667888877775
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.031 Score=49.18 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCC--cEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~--pv~vKiR~ 85 (287)
+.|+=+.|.-.+|+.|.+. .+++|+|.|-+|.=.. ..+.++++.+++. +. ...+-+..
T Consensus 68 ~~~~DvHLMv~~P~~~i~~--~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ik~~-g~~~kaGlalnP 127 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKA--CVAAGADIVTLQVEQT-----------------HDLALTIEWLAKQ-KTTVLIGLCLCP 127 (228)
T ss_pred CCCEEEEeccCCHHHHHHH--HHHhCCCEEEEcccCc-----------------ccHHHHHHHHHHC-CCCceEEEEECC
Confidence 5688899999999998754 4667999999995311 1245666666654 44 44555545
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCCCCccccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHH
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~~~~~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~ 157 (287)
+...+....+ .+. +|.|.|-.. ...|... +.-++-|+++++. .++.|-+-|||+ .+.+.++.+
T Consensus 128 ~Tp~~~i~~~----l~~-vD~VLiMtV~PGfgGQ~f~---~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~ 198 (228)
T PRK08091 128 ETPISLLEPY----LDQ-IDLIQILTLDPRTGTKAPS---DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQ 198 (228)
T ss_pred CCCHHHHHHH----Hhh-cCEEEEEEECCCCCCcccc---HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH
Confidence 4443333333 222 788866433 3322211 2334556655542 246689999996 688888887
Q ss_pred hcCccEEEEehhhhhCcc
Q 023070 158 ETGCEGVLSAESLLENPA 175 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~ 175 (287)
.|||.+.+|+++..+++
T Consensus 199 -aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 199 -HQIDWVVSGSALFSQGE 215 (228)
T ss_pred -CCCCEEEEChhhhCCCC
Confidence 69999999999877666
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0047 Score=57.79 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=37.5
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++|||+ .||.+++|+.++.+ .|+|+|.++
T Consensus 209 ~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~-~Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHh-cCCCEEEEC
Confidence 35799999999999999988 55789999999998 699999775
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.023 Score=52.55 Aligned_cols=131 Identities=10% Similarity=0.142 Sum_probs=94.8
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~ 85 (287)
.|+.+-| .+++.+.+.++ ..+.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-
T Consensus 110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 172 (320)
T PRK02714 110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG 172 (320)
T ss_pred Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4454444 33455555444 567799999887541 23455567778888776 5677777777
Q ss_pred CCChhhHHHHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+|+.+++.++++.+++ .++.+| +|.-. ..+++..+.+++.+++||.+.=.+.++.|+..+++...+|
T Consensus 173 ~w~~~~A~~~~~~l~~l~~~~i~~i-------EqP~~---~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d 242 (320)
T PRK02714 173 GLSLEEAKRWLQLCDRRLSGKIEFI-------EQPLP---PDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG 242 (320)
T ss_pred CCCHHHHHHHHHHHhhccCCCccEE-------ECCCC---cccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC
Confidence 8999999999999987 466655 22111 2478888999999999999999999999999999876667
Q ss_pred EEEE
Q 023070 163 GVLS 166 (287)
Q Consensus 163 ~Vmi 166 (287)
.|.+
T Consensus 243 ~v~i 246 (320)
T PRK02714 243 IFVI 246 (320)
T ss_pred EEEE
Confidence 6655
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.017 Score=52.53 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCCCEEEEecC--CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEE
Q 023070 7 EDRPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vK 82 (287)
.+.|+++-+=+ .+|..+.+.++. .+.|+.+|.|-=... + .+.+..++.-+-.++...+-|++++++. +.++.+=
T Consensus 72 ~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~-p-K~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii 149 (285)
T TIGR02317 72 TDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVL-P-KRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVII 149 (285)
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCC-c-cccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEE
Confidence 35788876622 348898888884 567999999974331 1 1223333332334444444455555443 4455555
Q ss_pred ecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHHHHH
Q 023070 83 IRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKC 155 (287)
Q Consensus 83 iR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da~~~ 155 (287)
-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.+++|+.+| ||-.-.-++.++
T Consensus 150 ARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL 218 (285)
T TIGR02317 150 ARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADEL 218 (285)
T ss_pred EEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHH
Confidence 554 234678888899999999999999753 23567888888888898433 332111234444
Q ss_pred HHhcCccEEEEehhhh
Q 023070 156 LEETGCEGVLSAESLL 171 (287)
Q Consensus 156 l~~~gad~VmiGR~~l 171 (287)
-+ .|+..|..|..++
T Consensus 219 ~~-lGv~~v~~~~~~~ 233 (285)
T TIGR02317 219 RE-AGYKMVIYPVTAF 233 (285)
T ss_pred HH-cCCcEEEEchHHH
Confidence 44 6999999985554
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.023 Score=51.64 Aligned_cols=158 Identities=19% Similarity=0.317 Sum_probs=93.3
Q ss_pred CCCCEEEEecCCC----HHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHHH
Q 023070 7 EDRPLFVQFCAND----PEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 7 ~~~p~~~Qi~g~~----~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
...|+|+|+.-.. +..+...++ .++. .+. |-||+ .|.. ...-+.+|.|-+++ +.+...++
T Consensus 36 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP-V~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~v 114 (283)
T PRK08185 36 NNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP-FVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEV 114 (283)
T ss_pred hCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 4679999996532 233555555 3333 343 66775 3433 22334555454433 22334444
Q ss_pred HHHHhhccCCcEEEEecC-CC---C---------hhhHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHH
Q 023070 68 VEKLALNLNVPVSCKIRV-FP---N---------LQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAI 129 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g~---~---------~~~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i 129 (287)
++... ..+++|-..+.. |. . ..+..+..+.+++.|+|++.+ ||...... ....+++.+
T Consensus 115 v~~a~-~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~---kp~L~~e~l 190 (283)
T PRK08185 115 VELAH-KVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK---KPELQMDLL 190 (283)
T ss_pred HHHHH-HcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC---CCCcCHHHH
Confidence 43332 346666655432 11 0 113334344445669999999 76654321 124689999
Q ss_pred HHHHhhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 130 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 130 ~~i~~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+++++.+++|++.-||+..+ ++++++++ .|+.-|=|++.+
T Consensus 191 ~~I~~~~~iPLVlHGgsg~~~e~~~~ai~-~GI~KiNi~T~l 231 (283)
T PRK08185 191 KEINERVDIPLVLHGGSANPDAEIAESVQ-LGVGKINISSDM 231 (283)
T ss_pred HHHHHhhCCCEEEECCCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 99999999999999998655 45566766 689989888765
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.017 Score=53.52 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
..|+-..++..+|+++.+.++ .++.||..+.+..+ | +.-.+.++++++.. ++.+.+...-
T Consensus 121 ~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~ 182 (324)
T TIGR01928 121 KAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANE 182 (324)
T ss_pred eEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCC
Confidence 345555566678888776655 56679999988753 1 11135566666655 3556666666
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+|+.+++ ..++.+++.++.+| ++.- .+.|++.++++++.+++||.+.=.+.++.++..+++...+|.+.
T Consensus 183 ~~~~~~a-~~~~~l~~~~~~~i-------EeP~---~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~ 251 (324)
T TIGR01928 183 SYDLQDF-PRLKELDRYQLLYI-------EEPF---KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVIN 251 (324)
T ss_pred CCCHHHH-HHHHHHhhCCCcEE-------ECCC---ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 7887664 56888998887776 2111 13468889999999999999988999999999999987888886
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 252 ~ 252 (324)
T TIGR01928 252 I 252 (324)
T ss_pred e
Confidence 5
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0046 Score=51.73 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=62.3
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
|++++ +|+-+|=.==--|......+ |-+-|.||..+.+|.++ +.+||..|.|+|.- . -|+.|+..|+|
T Consensus 27 AkIAE~AGA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~a----VsIPVMAK~RIGHf----v-EAqiLealgVD 95 (208)
T PF01680_consen 27 AKIAEEAGAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDA----VSIPVMAKVRIGHF----V-EAQILEALGVD 95 (208)
T ss_dssp HHHHHHHT-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH-----SSEEEEEEETT-H----H-HHHHHHHTT-S
T ss_pred HHHHHHhCCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHh----eEeceeecccccee----e-hhhhHHHhCCc
Confidence 44444 36444322223455544433 78889999999888876 47999999999863 2 27889999999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+|.=+-.-. ++|... .--|...++|+++ |-++.-.+.+-+.+ ||..+
T Consensus 96 ~IDESEVLT--------pAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI~E-GAaMI 142 (208)
T PF01680_consen 96 YIDESEVLT--------PADEEN-HIDKHNFKVPFVC--GARNLGEALRRIAE-GAAMI 142 (208)
T ss_dssp EEEEETTS----------S-SS-----GGG-SS-EEE--EESSHHHHHHHHHT-T-SEE
T ss_pred eeccccccc--------cccccc-cccchhCCCCeEe--cCCCHHHHHhhHHh-hhhhh
Confidence 997663211 233322 1223456889876 35677888877775 66543
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.002 Score=62.02 Aligned_cols=108 Identities=18% Similarity=0.276 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC------CCCccccHHH-HHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNA-IKA 131 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~------~~~~~~~~~~-i~~ 131 (287)
.++-+.++|..+++.. ..+|+||+-.+..... ++--+.++++|.|+|.|-...... ...| .-|+. +..
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~---iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVGT---IAAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchHH---HHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHHH
Confidence 4567888999998875 4679999866443222 222277899999999754322110 0111 12332 222
Q ss_pred HHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 132 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 132 i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+. + ++-|++.||++|..|+..++. .|||.|-+|+++|-
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a-LGAd~v~~gTa~li 408 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAA-LGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHHH-hCcchhhhchHHHH
Confidence 2221 1 477999999999999999998 69999999999864
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0092 Score=53.68 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=79.9
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
|++++ +|+-+|=.=---|......+ |-+-+++|+.+.+| ++.+++||.-+++.+. ..-++.+.++|+|
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvD 89 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVD 89 (283)
T ss_pred HHHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHH----HHhCCCCeEEeeehhH-----HHHHHHHHHcCCC
Confidence 44444 46544433224566553333 67778888876655 4456899999988755 4557889999999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.|.-+.|.+ +..+.+..+|...++|+++ |+.|.+++.+..+. |+|.|-
T Consensus 90 iIDaT~r~r---------P~~~~~~~iK~~~~~l~MA--D~stleEal~a~~~-Gad~I~ 137 (283)
T cd04727 90 MIDESEVLT---------PADEEHHIDKHKFKVPFVC--GARNLGEALRRISE-GAAMIR 137 (283)
T ss_pred EEeccCCCC---------cHHHHHHHHHHHcCCcEEc--cCCCHHHHHHHHHC-CCCEEE
Confidence 996443322 2356788888877777664 89999999999984 999764
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0064 Score=57.11 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=37.6
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++|||+ .||.+++|+..+.+ .|||+|.++
T Consensus 210 ~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~-~Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHH-cCCCEEEEC
Confidence 45799999999999999988 55789999999998 699999875
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0052 Score=55.52 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----C
Q 023070 64 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 136 (287)
Q Consensus 64 ~~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~ 136 (287)
+.+.++.+++... .+|.|-++ +.+-++.+.++|+|.|-+.. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566666666542 45655432 33445566689999887542 234455554443 2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++.|.++||| +++.+.++.+ +|+|.|.+|.....-|+
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 5669999999 9999999988 79999999986664554
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0088 Score=56.21 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=76.7
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-e-ccCCCCcCCCCccccHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-H-GRTRDEKDGKKFRADWNAIKA 131 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h-~rt~~~~~~~~~~~~~~~i~~ 131 (287)
||..+.+.++ ++++. ..+.||.+|...+.+.++....++.+.+.|..-|++ | |.+.-+... ....|+..+..
T Consensus 208 ~s~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~-~~~ldl~~i~~ 281 (360)
T PRK12595 208 GARNMQNFEL----LKAAG-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKAT-RNTLDISAVPI 281 (360)
T ss_pred CcccccCHHH----HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCC-CCCcCHHHHHH
Confidence 4555555444 33333 348999999776678889988899999999865554 5 443222111 22479999999
Q ss_pred HHhhCCCcEEEe-c---CCCCHH--HHHHHHHhcCccEEEEehhhhhCccch
Q 023070 132 VKNALRIPVLAN-G---NVRHME--DVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 132 i~~~~~ipVi~n-G---gI~s~~--da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
+++..++||+++ . |-++.. -+..++. .||||+||=+-+ ||...
T Consensus 282 lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 282 LKQETHLPVMVDVTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHHhCCCEEEeCCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCCC
Confidence 999889999994 2 322222 3444555 699999998877 77643
|
|
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.021 Score=53.39 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=90.5
Q ss_pred CCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
..|+-..+...++ +++.+.++ .++.||..+.+..+ | +.-.+.++++++.+ ++.+.+..+
T Consensus 125 ~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g~~~l~lDaN 186 (354)
T cd03317 125 SIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFPDIPLMADAN 186 (354)
T ss_pred eEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCCCCeEEEECC
Confidence 3455445544443 66666554 56779999999763 1 12245567777665 345555555
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++. +++.+++.++.+| ++.- .+.|++..+++++.+++||.+.=.+.+++++..+++...+|.+
T Consensus 187 ~~~~~~~a~-~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~ 255 (354)
T cd03317 187 SAYTLADIP-LLKRLDEYGLLMI-------EQPL---AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKII 255 (354)
T ss_pred CCCCHHHHH-HHHHhhcCCccEE-------ECCC---ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEE
Confidence 578877764 7888888887666 2211 1356888899999999999998889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 256 ~i 257 (354)
T cd03317 256 NI 257 (354)
T ss_pred Ee
Confidence 76
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0075 Score=56.57 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=72.8
Q ss_pred ccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HH
Q 023070 55 AFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 128 (287)
Q Consensus 55 ~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~ 128 (287)
+..+.+|+ ..+-++.+++.. +.||.+-+..... ..+..++.+.++..+++++.+|-..........+..++ +.
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~ 177 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN 177 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence 34456787 777777787765 8898887655211 11233455566677899999985322111111223345 57
Q ss_pred HHHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 129 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 129 i~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLAD-AGVKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH-cCCCEEEEC
Confidence 88888888999996 566677888887776 699999874
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0042 Score=59.31 Aligned_cols=78 Identities=8% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~---------~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++.+.|+|+|.+.+........ ...+.-|+.++++++.+ ++||++-||| +++++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 455667899999997654433221 22245677777766544 6999999999 6899999998 7999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986554
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=51.89 Aligned_cols=142 Identities=15% Similarity=0.272 Sum_probs=87.6
Q ss_pred CCCEEEEecCC---CHHHHHHHH-----HHHcCCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh--cc
Q 023070 8 DRPLFVQFCAN---DPEILLNAA-----RRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL--NL 75 (287)
Q Consensus 8 ~~p~~~Qi~g~---~~~~~~~aA-----~~~~~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~--~~ 75 (287)
+.|+++++.++ .|+.+-++. ..+..|+|+ +-||+|+.. +.+.+.++.+.+.. ..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~--------------e~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET--------------EREMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc--------------hHHHHHHHHHHHHHHHHc
Confidence 78999999987 333333222 234457776 556766544 24444444444322 34
Q ss_pred CCcEEEEecC-CCCh--------hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC
Q 023070 76 NVPVSCKIRV-FPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 146 (287)
Q Consensus 76 ~~pv~vKiR~-g~~~--------~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI 146 (287)
+.|+.+=+-. |... +.+...++...+.|+|.|-+- + +-+-+.++++.+.+++||+..||=
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~---------y--tg~~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK---------Y--TGDPESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec---------C--CCChHHHHHHHHhCCCCEEEeCCC
Confidence 7888763322 2221 123344556688999998553 2 223377888888889999999997
Q ss_pred CC--HHHHH----HHHHhcCccEEEEehhhhhCcc
Q 023070 147 RH--MEDVQ----KCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 147 ~s--~~da~----~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+ .+++. .+++ .|+.|+.+||-++..|.
T Consensus 212 k~~~~~~~l~~~~~ai~-aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 212 KTETEREFLEMVTAAIE-AGAMGVAVGRNIFQHED 245 (265)
T ss_pred CCCChHHHHHHHHHHHH-ccCcchhhhhhhhccCC
Confidence 65 44444 3444 49999999998876554
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0036 Score=61.42 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc---EEEEehhhhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 172 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad---~VmiGR~~l~ 172 (287)
+....+.|+|+|.+.+-..........+..++.++++.+..++||++-|||. ++++.++++ +|++ +|.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~-~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVME-SGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHH-cCCCcCceEEEEeHHhc
Confidence 4556678999998754433222111124578999999888899999999995 899998888 6888 9999999985
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
.++
T Consensus 481 ~~d 483 (502)
T PLN02898 481 QED 483 (502)
T ss_pred CCC
Confidence 544
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0084 Score=56.29 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=84.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhh
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~ 91 (287)
.-|+..+.+.+ +...++++|.|.|-|.-. . | +...-.++++-|++.. ...|... + --
T Consensus 244 AaiGTre~dK~-rl~ll~~aGvdvviLDSS--------q--G-----nS~~qiemik~iK~~yP~l~ViaG-----N-VV 301 (503)
T KOG2550|consen 244 AAIGTRDDDKE-RLDLLVQAGVDVVILDSS--------Q--G-----NSIYQLEMIKYIKETYPDLQIIAG-----N-VV 301 (503)
T ss_pred eccccccchhH-HHHHhhhcCCcEEEEecC--------C--C-----cchhHHHHHHHHHhhCCCceeecc-----c-ee
Confidence 44444444443 333356789998888621 1 1 2344567888888765 4555432 1 12
Q ss_pred HHHHHHHHHHcCCCEEEEecc------CCCCcCCCCccccHHH---HHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 92 TIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNA---IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~---i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+-++.|.++|+|.+-|--. |.+-. .-|.+.... +.+.+...++|||+.|||.+..++.++|. .||+
T Consensus 302 T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevm--a~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAs 378 (503)
T KOG2550|consen 302 TKEQAANLIAAGADGLRVGMGSGSICITQKVM--ACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGAS 378 (503)
T ss_pred eHHHHHHHHHccCceeEeccccCceeeeceee--eccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCch
Confidence 345678888999999988422 22211 111222222 34555567999999999999999999998 5999
Q ss_pred EEEEehhh
Q 023070 163 GVLSAESL 170 (287)
Q Consensus 163 ~VmiGR~~ 170 (287)
.||+|--+
T Consensus 379 tVMmG~lL 386 (503)
T KOG2550|consen 379 TVMMGGLL 386 (503)
T ss_pred hheeccee
Confidence 99999533
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0019 Score=59.17 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
...++.+.++..|+..|.+.....++... ..|+++++.++.+++||||++.|-.+|+...+.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~---GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNK---GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCC---CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 56799999999999999887776654322 4899999999999999999999999999999999999998764
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0096 Score=52.77 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPV 79 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv 79 (287)
+.|+++-+ +|++|..+.+.++. .+.|+.+|.|.=. |. .-|..+. .++...+=|++++++. ++-|
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I 140 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVI 140 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence 46777766 46679999999985 5679999999865 32 1234445 4555555455554432 4555
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
..+.-.. ...+++++=++.+.++|+|.|-+++.. +.+.++++.+.++.|+.++-+ ...-++.++
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL 208 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------SEEEIERIVKAVDGPLNVNPG-PGTLSAEEL 208 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------SHHHHHHHHHHHSSEEEEETT-SSSS-HHHH
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHHhcCCCEEEEcC-CCCCCHHHH
Confidence 5554332 245677888888999999999998652 235578888888899887764 222455555
Q ss_pred HHhcCccEEEEehhhh
Q 023070 156 LEETGCEGVLSAESLL 171 (287)
Q Consensus 156 l~~~gad~VmiGR~~l 171 (287)
-+ .|+..|.+|-.++
T Consensus 209 ~~-lGv~~v~~~~~~~ 223 (238)
T PF13714_consen 209 AE-LGVKRVSYGNSLL 223 (238)
T ss_dssp HH-TTESEEEETSHHH
T ss_pred HH-CCCcEEEEcHHHH
Confidence 55 6999999886554
|
... |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=52.66 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCHH--------HHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc
Q 023070 8 DRPLFVQFCANDPE--------ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 78 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~--------~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p 78 (287)
..|+|.-+-..+|. +..+.|+.. +.|+++|-++. ....||+. .+.+.++++.+++|
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-------e~~~f~g~--------~~~l~~v~~~v~iP 113 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-------DERFFQGS--------LEYLRAARAAVSLP 113 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-------ccccCCCC--------HHHHHHHHHhcCCC
Confidence 36888888665554 236666644 45899997752 23334544 35666777778999
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
|..|--+ .+.. -+..+.++|+|+|++.+.... ...+..+-+..+..++.+++ .+.+.+++.++.+
T Consensus 114 vl~kdfi----~~~~-qi~~a~~~GAD~VlLi~~~l~-------~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~- 178 (260)
T PRK00278 114 VLRKDFI----IDPY-QIYEARAAGADAILLIVAALD-------DEQLKELLDYAHSLGLDVLV--EVHDEEELERALK- 178 (260)
T ss_pred EEeeeec----CCHH-HHHHHHHcCCCEEEEEeccCC-------HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHH-
Confidence 9987311 2233 466778999999999877532 12233333333335654444 5889999998887
Q ss_pred cCccEEEEe
Q 023070 159 TGCEGVLSA 167 (287)
Q Consensus 159 ~gad~VmiG 167 (287)
.|+|.+.+.
T Consensus 179 ~gadiIgin 187 (260)
T PRK00278 179 LGAPLIGIN 187 (260)
T ss_pred cCCCEEEEC
Confidence 599988863
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=54.07 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=66.9
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
.|+.+.+-...+.+...+.++.+++.|++.|.+|....... . ...|+.++++++.+++||++- ++.+++++..+.
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~ 190 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV 190 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH
Confidence 67777775544667777888888999999999986544321 1 257899999999999999985 478999999888
Q ss_pred HhcCccEEEEe
Q 023070 157 EETGCEGVLSA 167 (287)
Q Consensus 157 ~~~gad~VmiG 167 (287)
+ .|+|+|.+.
T Consensus 191 ~-~G~d~I~v~ 200 (299)
T cd02809 191 D-AGADGIVVS 200 (299)
T ss_pred H-CCCCEEEEc
Confidence 7 699999774
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.017 Score=50.36 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=87.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChh--hhh--cCccc-----ccccCChHHHH------------
Q 023070 8 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IAR--RGNYG-----AFLMDNLPLVK------------ 65 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~--~~~--~~~~G-----~~l~~~~~~~~------------ 65 (287)
+.+++.=+.+.++++..+.++.+ +.|++.|||-+-.|.. ..+ +..|+ +...-+++.+.
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 46788889999999999999965 4589999998765541 111 01111 11112222222
Q ss_pred -----HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 66 -----SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 66 -----~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
++++..++ .++|+.- | ..+.-| +..+.++|++.+-+.+-... ....+++.++.-. ++|
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP----G--~~TptE-i~~a~~~Ga~~vKlFPa~~~--------gg~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP----G--VSTPSE-LMLGMELGLRTFKFFPAEAS--------GGVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC----C--CCCHHH-HHHHHHCCCCEEEEccchhc--------cCHHHHHHHhccCCCCe
Confidence 22222111 1122210 1 112223 45567888888888532110 0246777777654 699
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
++..|||. ++++.+.++. | +.+.+|.+.+.++.+.
T Consensus 158 ~~ptGGV~-~~ni~~~l~a-g-~v~~vggs~L~~~~~~ 192 (212)
T PRK05718 158 FCPTGGIS-PANYRDYLAL-P-NVLCIGGSWMVPKDAI 192 (212)
T ss_pred EEEeCCCC-HHHHHHHHhC-C-CEEEEEChHhCCcchh
Confidence 99999995 5999999985 6 4455555666554443
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.019 Score=55.43 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=89.2
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
+|+++++-|+ .++ .||..+.|..|-+ +++.-.+.++++++.+ ++.+.+...-+|+.++++.+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 5777766554 454 5999999976521 2344466677777765 46677777778999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++. +.+| ++.-. +.| ++.++++++.+++||.+.-.+.++.++..+++...+|.++.
T Consensus 245 ~~~Le~~-~~~i-------EePv~---~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG---AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred HHHhhhh-hceE-------eCCCC---cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999986 5433 22111 223 78899999999999999888999999999999877888653
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.011 Score=53.22 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=73.4
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCC-ccccHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~-~~~~~~~i~ 130 (287)
-||..+.+.+++.++ ...+.||.+|-....+.++....++.+...|-.-+++ |..++.. ..|+ ...|+..+.
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~-~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTF-ETYTRNTLDLAAVA 189 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCC-CCCCHHHHHHHHHH
Confidence 345555554444433 2458999999777667888888899999999866544 4322111 1221 235788888
Q ss_pred HHHhhCCCcEEE-ecCCCC-----HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLA-NGNVRH-----MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~-nGgI~s-----~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++..++||++ ..-... +..+..++. .||||+||=+-+
T Consensus 190 ~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva-~Ga~Gl~iE~H~ 234 (266)
T PRK13398 190 VIKELSHLPIIVDPSHATGRRELVIPMAKAAIA-AGADGLMIEVHP 234 (266)
T ss_pred HHHhccCCCEEEeCCCcccchhhHHHHHHHHHH-cCCCEEEEeccC
Confidence 888888999998 343333 555666666 599999987544
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.032 Score=50.82 Aligned_cols=101 Identities=24% Similarity=0.336 Sum_probs=66.0
Q ss_pred HHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC-----CCccccHHHHHHHHhhCCCc
Q 023070 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-----KKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~-----~~~~~~~~~i~~i~~~~~ip 139 (287)
.+.+...++..+.|+.+-++ +.+.++..+.++.++++|+|+|.+|-........ .....-.+.++.+++.+++|
T Consensus 78 ~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 78 LEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCC
Confidence 33333344445788888875 4556888999999999999999997443321110 00011235677888888899
Q ss_pred EE--EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VL--ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi--~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+ .+.++.+..++.+.+.+.|+|++.+
T Consensus 157 v~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 157 VIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 88 4455555666666666689999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.039 Score=51.48 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=77.5
Q ss_pred HHcCCCCEEEEeccCChhhhhcCccccccc-----CChHHHHHHHHHHhhccCCcEEEEe--c-CCC-----------Ch
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--R-VFP-----------NL 89 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~-----~~~~~~~~iv~~v~~~~~~pv~vKi--R-~g~-----------~~ 89 (287)
+++.|+|+|-+++- ||+.-. .....+.++.++.+ ..++|+.+=+ . .+. +.
T Consensus 115 a~~~GAdAVk~lv~----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~p 183 (340)
T PRK12858 115 IKEAGADAVKLLLY----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVKP 183 (340)
T ss_pred HHHcCCCEEEEEEE----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccCH
Confidence 45679999888742 332100 11223444444433 3489987742 1 111 22
Q ss_pred hhHHHHHHHHHH--cCCCEEEEec-c---CCCCcC----CCCccccHHHHHHHHhhCCCcEEE-ecCCCCHHHHHHHHH-
Q 023070 90 QDTIKYAKMLED--AGCSLLAVHG-R---TRDEKD----GKKFRADWNAIKAVKNALRIPVLA-NGNVRHMEDVQKCLE- 157 (287)
Q Consensus 90 ~~~~~~a~~l~~--~G~~~I~vh~-r---t~~~~~----~~~~~~~~~~i~~i~~~~~ipVi~-nGgI~s~~da~~~l~- 157 (287)
+.....++.+.+ .|+|.+-+-- . ..++.. .++...-.+.++++.+.+++|++. +||+ +.+++.+.++
T Consensus 184 ~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~ 262 (340)
T PRK12858 184 EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEF 262 (340)
T ss_pred HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHH
Confidence 345567777884 9999997631 1 111100 011011125677778888999765 7887 6676665553
Q ss_pred --hcCc--cEEEEehhhhhCcc
Q 023070 158 --ETGC--EGVLSAESLLENPA 175 (287)
Q Consensus 158 --~~ga--d~VmiGR~~l~nP~ 175 (287)
+.|+ .||.+||....++-
T Consensus 263 A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 263 ACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHcCCCccchhhhHHHHhhhh
Confidence 2689 99999999887655
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.054 Score=47.74 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l 99 (287)
-+..+|...++.|+|.||+- +-..|.-| -+.|..+.+|+..+... .|||..+.=.+ +......-+..+
T Consensus 8 r~~eEA~~Al~~GaDiIDvK------~P~~GaLG---A~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~ 76 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVK------NPKEGSLG---ANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGA 76 (238)
T ss_pred CCHHHHHHHHhcCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHH
Confidence 34456666677899999995 22233333 35677788888877643 68998864222 233344445556
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH----hh-CCCcEEEecCCC-------CHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK----NA-LRIPVLANGNVR-------HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~----~~-~~ipVi~nGgI~-------s~~da~~~l~~~gad~VmiG 167 (287)
..+|+|+|-|- ..... .. ...++.++.+. .. .+..|++.+--. ++.++.....+.|++++|+-
T Consensus 77 a~~GvDyVKvG-l~~~~--~~--~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlD 151 (238)
T PRK02227 77 AATGADYVKVG-LYGGK--TA--EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLD 151 (238)
T ss_pred HhhCCCEEEEc-CCCCC--cH--HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEe
Confidence 77999999873 11110 00 12234443332 22 246677665222 56777778877899999997
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 215 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (287)
++.=..-.+|..+. .+.+.+|++.+..++
T Consensus 152 Ta~Kdg~~Lfd~l~-------------------~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 152 TAIKDGKSLFDHMD-------------------EEELAEFVAEARSHG 180 (238)
T ss_pred cccCCCcchHhhCC-------------------HHHHHHHHHHHHHcc
Confidence 76555555554331 345778888777766
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.048 Score=48.48 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=76.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+...|-..|.+.-|-..- ++. ...|+..+..+
T Consensus 99 gArn~rn~~LL----~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf--~y~r~~~D~~~ip~~ 171 (258)
T TIGR01362 99 PAFLCRQTDLL----VAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSF--GYNNLVVDMRSLPIM 171 (258)
T ss_pred CchhcchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc--CCCCcccchhhhHHH
Confidence 67777777554 44443 489999997777888899999999999999999887664421 221 13577778878
Q ss_pred HhhCCCcEEEe---------------cCCCCHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN---------------GNVRHME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n---------------GgI~s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++. +.|||.- ||.++.- -+...+. .|+||+||= .--||.
T Consensus 172 k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA-~GaDGl~iE--vHpdP~ 227 (258)
T TIGR01362 172 REL-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVA-VGIDGLFME--THPDPK 227 (258)
T ss_pred Hhc-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH-hCCCEEEEE--eCCCcc
Confidence 775 8999953 4544322 2334455 699999995 334554
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.071 Score=46.81 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l 99 (287)
-+..+|...++.|+|.||+- +-..|.-|+ ..|..+.+|++.+.. ..|||.-+.=.+ ........+...
T Consensus 8 ~~~~EA~~a~~~gaDiID~K------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~ 76 (235)
T PF04476_consen 8 RNVEEAEEALAGGADIIDLK------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGA 76 (235)
T ss_pred CCHHHHHHHHhCCCCEEEcc------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHH
Confidence 34556666677899999995 223333443 456777777666533 389998864322 333333334445
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHH----HhhC-CCcEEEec--CC-----CCHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KNAL-RIPVLANG--NV-----RHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i----~~~~-~ipVi~nG--gI-----~s~~da~~~l~~~gad~VmiG 167 (287)
...|+++|-|-=-... .. ....+.++.+ +..- +..|++.+ |- -++-++.+...+.|++++|+-
T Consensus 77 a~~GvdyvKvGl~g~~---~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlD 151 (235)
T PF04476_consen 77 AATGVDYVKVGLFGCK---DY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLD 151 (235)
T ss_pred HhcCCCEEEEecCCCC---CH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEe
Confidence 6789999988411000 00 1112333333 3321 34566665 22 245677777777899999999
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 215 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (287)
++.=....+|..+. .+.+.+|++.+..++
T Consensus 152 Ta~Kdg~~L~d~~~-------------------~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 152 TADKDGGSLFDHLS-------------------EEELAEFVAQARAHG 180 (235)
T ss_pred cccCCCCchhhcCC-------------------HHHHHHHHHHHHHcc
Confidence 88777777776432 245777887777765
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0096 Score=55.23 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
++...+.++.++....+.+. .+.+ .+..+.++.+.++|++.|.+...... + ..-++.++++++.. ++|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~----~~~~-~~~~~~~~~l~eagv~~I~vd~~~G~-----~-~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAA----VGTR-EDDKERAEALVEAGVDVIVIDSAHGH-----S-VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEe----cCCC-hhHHHHHHHHHhcCCCEEEEECCCCC-----c-HHHHHHHHHHHHHCCCce
Confidence 34455566666543222222 2322 45567888889999999988642211 0 12357788888875 488
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
|++ |.+.|++++..+++ .|||+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~-aGaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLID-AGADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHh-cCCCEEEEC
Confidence 887 99999999999988 699999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.047 Score=49.87 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=90.9
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEE
Q 023070 7 EDRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~v 81 (287)
.+.||++-+ +|+.++ ..+.++ ..+.|+.+|.|-=... ..+.+..++.-+-.++...+-|++++++. +.++.+
T Consensus 76 ~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~--pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I 152 (294)
T TIGR02319 76 VDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN--PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTI 152 (294)
T ss_pred cCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC--ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 357888776 355555 566666 4567999999974321 12233333432334444444444444432 334544
Q ss_pred EecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcE---EEecCCCCHHHHHH
Q 023070 82 KIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV---LANGNVRHMEDVQK 154 (287)
Q Consensus 82 KiR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipV---i~nGgI~s~~da~~ 154 (287)
=-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.++.|+ +..||-.-.-++.+
T Consensus 153 ~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-----------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~e 221 (294)
T TIGR02319 153 IARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-----------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKE 221 (294)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC-----------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHH
Confidence 4444 345678888899999999999999852 23467888888888787 34443322223444
Q ss_pred HHHhcCccEEEEehhhh
Q 023070 155 CLEETGCEGVLSAESLL 171 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l 171 (287)
+-+ .|++.|..+-.++
T Consensus 222 L~~-lG~~~v~~~~~~~ 237 (294)
T TIGR02319 222 LES-IGYNLAIYPLSGW 237 (294)
T ss_pred HHH-cCCcEEEEcHHHH
Confidence 444 6999999985554
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.021 Score=49.51 Aligned_cols=149 Identities=14% Similarity=0.165 Sum_probs=82.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.++.+-+=-.+.++..+.++.+....++|+++..+=. .+| .++++.+++...+++.+|+-.-
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~di-- 65 (215)
T PRK13813 4 SRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVADI-- 65 (215)
T ss_pred CCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeecccc--
Confidence 3455555334444444444433334678888742211 122 3566777766677777886411
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCC-------------c--------CC----------------------CCc---
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K--------DG----------------------KKF--- 122 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------~--------~~----------------------~~~--- 122 (287)
......+++.+.++|+|++++|.-.... . .. ..+
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1122334577778999999998643100 0 00 000
Q ss_pred -cccHHHHHHHHhhCCCc-EEEecCCCCH-HHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 123 -RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 123 -~~~~~~i~~i~~~~~ip-Vi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
....+.++++++..+-+ .+..|||+.. .++..+++ .|+|++.+||+++..++.
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~-aGad~iV~Gr~I~~~~d~ 201 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIK-AGADYVIVGRSIYNAADP 201 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHH-cCCCEEEECcccCCCCCH
Confidence 01123344555544332 3477999863 24677777 699999999998876653
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0065 Score=54.04 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=78.5
Q ss_pred HHHHHHHhhccCCcEEEEecC------------C----------CChhhHHHHHHHHHHcCCCEE-EEeccCC-------
Q 023070 65 KSLVEKLALNLNVPVSCKIRV------------F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR------- 114 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~------------g----------~~~~~~~~~a~~l~~~G~~~I-~vh~rt~------- 114 (287)
.+.++.++..+.+||-+|==+ | .+.++..+++....+.|.+.+ -||...-
T Consensus 96 ~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ 175 (254)
T COG0134 96 FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKL 175 (254)
T ss_pred HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhC
Confidence 355567777889999888422 2 122345566666677777665 4553210
Q ss_pred -------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 115 -------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 115 -------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+.+.-.+...|++...++.... +..+|.-+||.+++|+.++.. .|+|++.||.++|.+++....+
T Consensus 176 ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~-~ga~a~LVG~slM~~~~~~~a~ 249 (254)
T COG0134 176 GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAK-AGADAFLVGEALMRADDPEEAL 249 (254)
T ss_pred CCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHH-cCCCEEEecHHHhcCCCHHHHH
Confidence 0001112246778777887765 377899999999999998888 6999999999999999875433
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.058 Score=48.51 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+.+.|...|.+.-|-....+. ....|+..+..++
T Consensus 113 gAr~~rntdLL----~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~-~~~~D~~~ip~mk 186 (281)
T PRK12457 113 PAFLARQTDLV----VAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD-NLVVDMLGFRQMK 186 (281)
T ss_pred CchhhchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC-CcccchHHHHHHH
Confidence 67777776554 44433 479999997666788889999999999999999887664432222 1246888888888
Q ss_pred hh-CCCcEEEe---------------cCCCCH--HHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 134 NA-LRIPVLAN---------------GNVRHM--EDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 134 ~~-~~ipVi~n---------------GgI~s~--~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+. +++|||.- ||.+.. .-+...+. .|+||+|+= .--||.
T Consensus 187 ~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA-~GaDGl~iE--vHpdP~ 243 (281)
T PRK12457 187 RTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMA-VGLAGLFLE--AHPDPD 243 (281)
T ss_pred hhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE--ecCCcc
Confidence 85 68999953 444322 22344454 699999995 334554
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.033 Score=50.54 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=95.0
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ .++. .+ -|-||+ .|+. ...-+.||.|-+. ++.+..++
T Consensus 41 ~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~v-PV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (283)
T PRK07998 41 SGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDV-PVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKE 119 (283)
T ss_pred hCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCC-CEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 357999998442 3344554444 2332 33 244553 2332 1222445554433 23344555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
+++... ..+++|-.-+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+.. ...|++.++++++.
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~ 197 (283)
T PRK07998 120 AVDFAK-SYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEV 197 (283)
T ss_pred HHHHHH-HcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhh
Confidence 555443 246666444322 11 0 12444555556789999997754444333322 24689999999999
Q ss_pred CCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 136 LRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 136 ~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+++|++.-||=..+ +++.++++ .|+..|=|++.+.
T Consensus 198 ~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~Tel~ 233 (283)
T PRK07998 198 SPVPLVIHGGSGIPPEILRSFVN-YKVAKVNIASDLR 233 (283)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHH-cCCcEEEECHHHH
Confidence 99999988875555 66777877 6999999998764
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.014 Score=54.22 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=70.9
Q ss_pred ccccCChHHHHHHHHHHhh-ccCCcEEEEecCCCChh-hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HH
Q 023070 55 AFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 128 (287)
Q Consensus 55 ~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~g~~~~-~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~ 128 (287)
+..+.+|+..... ..+++ ..++|+.+-+....... ...++.+.++..+++++.+|--.........+..++ +.
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~ 170 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEK 170 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHH
Confidence 3345688876666 77776 56899988765421111 134455556666788888874321111111122344 67
Q ss_pred HHHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 129 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 129 i~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.+++||++ +|.-.+.+.+..+.+ .|+|+|-++
T Consensus 171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~-aGvd~I~Vs 210 (333)
T TIGR02151 171 IAEICSQLSVPVIVKEVGFGISKEVAKLLAD-AGVSAIDVA 210 (333)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 88899988999986 455578888876666 699999886
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.037 Score=50.76 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=84.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.=.++++.+++.+ .+||.+-+.. .+..++++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~ 90 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIE 90 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHH
Confidence 47788888777 5677999999982 234444455666677777777766 3788877532 34688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-...... ...-++.++.+.+++++||| +| |---+++.+.++-+
T Consensus 91 lak~a~~~Gad~il~v~PyY~k~~---~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 91 LAKHAEKLGADGILVVPPYYNKPS---QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCC---hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 999999999999988644322111 12335667778888888865 45 44456666655554
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.02 Score=50.84 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=85.7
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G~ 104 (287)
|++++ .|||+|=+-=.+-. .. -++-..-+-..+.+...++.|...+.+||++.+..|. +..+..+.++.+.+.|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~-~s--~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVA-AS--LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHH-Hh--cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 44444 48998877521111 11 1222223345677788888888888999999998875 34567788999999999
Q ss_pred CEEEEeccCCCCcCC-------CCccccHHHHHHHHhh----CCCcEEEecC---C--CCHHHHHHHH---HhcCccEEE
Q 023070 105 SLLAVHGRTRDEKDG-------KKFRADWNAIKAVKNA----LRIPVLANGN---V--RHMEDVQKCL---EETGCEGVL 165 (287)
Q Consensus 105 ~~I~vh~rt~~~~~~-------~~~~~~~~~i~~i~~~----~~ipVi~nGg---I--~s~~da~~~l---~~~gad~Vm 165 (287)
++|.+-+.....+.+ .+.....+.|+.+++. .+++|++--+ + .+.+++.+.. .+.|||+|+
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999995443221111 0001112334444443 2466666522 2 3455554332 336999999
Q ss_pred EehhhhhCccchhchh
Q 023070 166 SAESLLENPALFAGFR 181 (287)
Q Consensus 166 iGR~~l~nP~lf~~~~ 181 (287)
+=-. .++.-++++.
T Consensus 179 v~~~--~~~~~~~~~~ 192 (243)
T cd00377 179 VEGL--KDPEEIRAFA 192 (243)
T ss_pred eCCC--CCHHHHHHHH
Confidence 8422 2555555443
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.031 Score=52.26 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=76.3
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCC-ccccHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~-~~~~~~~i~ 130 (287)
-|+..+.+.+++. ++. ..+.||.+|-....+.++....++.+.+.|..-|++ |..++.-...|+ ...||..+.
T Consensus 190 Iga~~~~n~~LL~----~va-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~ 264 (352)
T PRK13396 190 VGARNMQNFSLLK----KVG-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIP 264 (352)
T ss_pred ECcccccCHHHHH----HHH-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHH
Confidence 4777888877644 443 248999999877778899999999999999876655 543322111222 357999999
Q ss_pred HHHhhCCCcEEEec----CCCC--HHHHHHHHHhcCccEEEEeh
Q 023070 131 AVKNALRIPVLANG----NVRH--MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 131 ~i~~~~~ipVi~nG----gI~s--~~da~~~l~~~gad~VmiGR 168 (287)
.+++..++|||++- |.++ +.-+..++. .||||+||=+
T Consensus 265 ~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva-~GAdGliIE~ 307 (352)
T PRK13396 265 VLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIA-AGTDSLMIEV 307 (352)
T ss_pred HHHHhhCCCEEECCcccCCcHHHHHHHHHHHHh-hCCCeEEEEe
Confidence 99988899998762 3322 233444554 6999999864
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.036 Score=50.35 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=94.0
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHH-HcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARR-VEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~-~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. +.+.+...++. ++. .+ -|-||+ .|.. ....+.||.|-+.+ +.+..++
T Consensus 39 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~ 117 (282)
T TIGR01858 39 MRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNM-PLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKE 117 (282)
T ss_pred hCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHH
Confidence 357999999652 34555555553 332 33 255664 2333 12334556554432 3344555
Q ss_pred HHHHHhhccCCcEEEEecC--C-CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--F-PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g-~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++..+. .+++|-.=+.- | .+ ..++.+..+.+++.|+|.+.|.=+|.-+.+......||+.+++++
T Consensus 118 vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~ 196 (282)
T TIGR01858 118 VVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIR 196 (282)
T ss_pred HHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHH
Confidence 5554432 35555443321 1 00 123344444556899999977544443333333358999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 197 ~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 197 EVVDVPLVLHGASDVPDEDVRRTIE-LGICKVNVATELK 234 (282)
T ss_pred HHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 9999999988865444 55666776 6999998887663
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.014 Score=55.17 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=38.2
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.|+.+++..++|||+ .||.|.+|+..+++ .|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~-~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVR-FGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHh-CCCCEEEEC
Confidence 46899999999999999888 66899999999998 699999875
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.073 Score=48.61 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=95.1
Q ss_pred CCCCEEEEecC--CCHHHHHHHHHH-HcCCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEE
Q 023070 7 EDRPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~aA~~-~~~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~v 81 (287)
.+.|+++-+=+ .+|..+.+..+. .+.|+.+|.|==.. |. +.+..++.-+-.++...+-|++++++. +.++.+
T Consensus 77 ~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~I 153 (292)
T PRK11320 77 CDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVI 153 (292)
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEE
Confidence 35688877733 289999998885 56799999996432 22 223333332334554454555554433 455555
Q ss_pred EecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE---ecCCCCHHHHHH
Q 023070 82 KIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA---NGNVRHMEDVQK 154 (287)
Q Consensus 82 KiR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~---nGgI~s~~da~~ 154 (287)
=-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.+++|+.+ ++|-.-.-++.+
T Consensus 154 iARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~ 222 (292)
T PRK11320 154 MARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADAVKVPILANITEFGATPLFTTEE 222 (292)
T ss_pred EEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH
Confidence 5554 234678888899999999999999853 2457788888888889844 333221112333
Q ss_pred HHHhcCccEEEEehhhh
Q 023070 155 CLEETGCEGVLSAESLL 171 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l 171 (287)
+- +.|+..|..|-.++
T Consensus 223 L~-~lGv~~v~~~~~~~ 238 (292)
T PRK11320 223 LA-SAGVAMVLYPLSAF 238 (292)
T ss_pred HH-HcCCcEEEEChHHH
Confidence 33 46999999986554
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.032 Score=46.96 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC---ChhhHHH
Q 023070 19 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~---~~~~~~~ 94 (287)
|.+.+.+.++. ++.|+++|.++. +.+..+.+.+... ++|+.+++.... ..+++.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 78888888884 567999999983 2333333332210 489998876532 1478889
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEE-e-cCCC-CHHHHHHH---HHhcCccEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-N-GNVR-HMEDVQKC---LEETGCEGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~-n-GgI~-s~~da~~~---l~~~gad~Vmi 166 (287)
.++.+.+.|++++.++.-....... ....-.+.++++.+.+ ++||+. | -+.. +++...++ +...|+|+|=.
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSLKEG-DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHHhCC-CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 9999999999999887422110000 0012256677888774 788764 2 2222 66666554 34568999876
Q ss_pred ehh
Q 023070 167 AES 169 (287)
Q Consensus 167 GR~ 169 (287)
..+
T Consensus 149 ~~~ 151 (201)
T cd00945 149 STG 151 (201)
T ss_pred CCC
Confidence 554
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.016 Score=54.82 Aligned_cols=43 Identities=19% Similarity=0.566 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++||+.- ||.+.+|+..+++ .|+|+|.++
T Consensus 239 ~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~-~G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVE-AGVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHH-CCCCEEEEc
Confidence 357999999999999999885 7899999999998 599999986
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=54.83 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=36.9
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+|+.++.+++..++||++-| |.+++|+..+.+ .|+|+|.+
T Consensus 208 ~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~-~G~d~I~v 248 (351)
T cd04737 208 LSPADIEFIAKISGLPVIVKG-IQSPEDADVAIN-AGADGIWV 248 (351)
T ss_pred CCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHH-cCCCEEEE
Confidence 579999999999999999875 899999998888 69999988
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.017 Score=50.98 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=47.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~ 85 (287)
++++-+ |..++.++.+.++. ..+.|+++.+.=. .+| .++++.+++. ..+++.+|+
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~Kl-- 62 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLKL-- 62 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEeeh--
Confidence 455554 55555566665543 4678888753111 122 3446666654 456666664
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEec
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHG 111 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~ 111 (287)
..-.......++.+.+.|++++|||+
T Consensus 63 ~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 63 HDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred hhccccHHHHHHHHHHcCCCEEEEcc
Confidence 22222344567778899999999996
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.081 Score=49.13 Aligned_cols=132 Identities=16% Similarity=0.232 Sum_probs=92.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~ 87 (287)
|+...+...+++.+.+.++.. .|+..+.+..|-+ | .+++.-.+.++++++.+ ++.+.+..+-+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 344444444666544443322 4777777776511 1 24555567777787776 466667767789
Q ss_pred ChhhHHHHHHHH-HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l-~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++++.+++.+ ++.++.+| ++. - .+++.++.+++.+++||.+.=.+++..|..++++..++|.+++
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~i-------EqP----~-~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYV-------EQP----C-ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CHHHHHHHHHHhhhccCceEE-------ecC----C-CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999 67777766 211 1 2367788899999999999888999999999999888999887
Q ss_pred e
Q 023070 167 A 167 (287)
Q Consensus 167 G 167 (287)
-
T Consensus 214 k 214 (327)
T PRK02901 214 K 214 (327)
T ss_pred C
Confidence 4
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=52.95 Aligned_cols=95 Identities=14% Similarity=0.325 Sum_probs=58.9
Q ss_pred HHHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHH-HHHHHh-hCCCc
Q 023070 64 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA-IKAVKN-ALRIP 139 (287)
Q Consensus 64 ~~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~-i~~i~~-~~~ip 139 (287)
+.+.++.+++... .+|.+-+ + ..+-+..+.++|+|+|-+..-+ +.++.. +..+++ ..++|
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv------~-tleea~eA~~~GaD~I~LDn~~---------~e~l~~av~~~~~~~~~i~ 245 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVET------E-TLEQVQEALEYGADIIMLDNMP---------VDLMQQAVQLIRQQNPRVK 245 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC------C-CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHHhcCCCeE
Confidence 3455555565543 3333332 1 2233445558999999886221 122222 222222 35789
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
+.++||| +.+.+.++.+ +|+|++.+|+....-|++
T Consensus 246 leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 246 IEASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 9999999 5899998887 799999999877756653
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.051 Score=49.44 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=93.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHH-HcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARR-VEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~-~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++. ++. .+ -|-||+ .|.. . ..-+.||.|-+.+ +.+..++
T Consensus 41 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~e 119 (286)
T PRK12738 41 MRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM-PLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKS 119 (286)
T ss_pred HCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHH
Confidence 357999998542 33445554442 332 33 244554 2322 1 2234556554432 3445555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++.... .+++|-.=+.- |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......|++.+++|+
T Consensus 120 vv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~ 198 (286)
T PRK12738 120 VVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIR 198 (286)
T ss_pred HHHHHHH-cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHH
Confidence 5554432 24554433321 10 0 123444455556889999987544444333333357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVLHGgSG~~~e~~~kai~-~GI~KiNi~T~l~ 236 (286)
T PRK12738 199 EVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATELK 236 (286)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 999999998885433 466777777 6999898887653
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0082 Score=56.05 Aligned_cols=72 Identities=24% Similarity=0.424 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++..+.++.|.++|+|.|+|..-.... ..-.+.++.+++..+ +|||+ |+|-|++-++.+++ .|||+|-+|-
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~-aGad~vkVGi 178 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLID-AGADAVKVGI 178 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHH-TT-SEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHH-cCCCEEEEec
Confidence 345677888999999999996332111 233577889988864 88885 88999999999888 6999999985
Q ss_pred h
Q 023070 169 S 169 (287)
Q Consensus 169 ~ 169 (287)
|
T Consensus 179 G 179 (352)
T PF00478_consen 179 G 179 (352)
T ss_dssp S
T ss_pred c
Confidence 4
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.77 E-value=0.021 Score=48.56 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC---ChhhHHHHHH
Q 023070 24 LNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQDTIKYAK 97 (287)
Q Consensus 24 ~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~---~~~~~~~~a~ 97 (287)
.+.|+.+ ..|+.+|-+|- .+-++++++.+++||. +|-.... ...-+++-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~~-----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG-----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES-----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC-----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 4455544 45789999981 2346778888999986 4532211 1123456677
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++|++.|.+.+-.+.. + ..-.+.++++++.. +..-.||.|.+++..+.+ .|+|.|.-
T Consensus 59 ~l~~aGadIIAlDaT~R~R----p-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~-~G~D~I~T 118 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPR----P-ETLEELIREIKEKY---QLVMADISTLEEAINAAE-LGFDIIGT 118 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-----S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHH-TT-SEEE-
T ss_pred HHHHcCCCEEEEecCCCCC----C-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHH-cCCCEEEc
Confidence 8889999999887644431 1 23357788898876 455679999999999998 59998753
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.053 Score=49.30 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=93.5
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ .++. .+ -|-||+ .|+. . ..-+.||.|-+.+ +.+..++
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V-PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~ 119 (284)
T PRK12737 41 LRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI-PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKE 119 (284)
T ss_pred hCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHH
Confidence 467999999753 3344545444 3332 33 255665 2432 2 2234556554432 3444555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++-.+. .++.|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......||+.+++++
T Consensus 120 vv~~Ah~-~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~ 198 (284)
T PRK12737 120 VVEFCHR-YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIR 198 (284)
T ss_pred HHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 5554432 24554443321 10 0 123344444556799999977544433333222357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++++ .|+.-|=|++.+.
T Consensus 199 ~~~~iPLVlHGgSG~~~e~~~kai~-~Gi~KiNi~T~l~ 236 (284)
T PRK12737 199 EKVSIPLVLHGASGVPDEDVKKAIS-LGICKVNVATELK 236 (284)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeCcHHH
Confidence 999999998876443 356677776 6999999988753
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.041 Score=47.47 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh--hhh--cCccc-----ccccCChHHHHHHHHHHhh----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR--IAR--RGNYG-----AFLMDNLPLVKSLVEKLAL---- 73 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~--~~~--~~~~G-----~~l~~~~~~~~~iv~~v~~---- 73 (287)
+.|++.=|.+.++++..+.++. ++.|+..|||.+-.|.. ..+ +..|+ +.-.-+++.+.+.+++=.+
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5678888999999999999995 56689999999887762 111 11222 2112344444444332100
Q ss_pred ------------ccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcE
Q 023070 74 ------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPV 140 (287)
Q Consensus 74 ------------~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipV 140 (287)
..++|+.--. .+.. | +....++|++.|-+.+-..- + -..+++.++.-. ++|+
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~---~Tpt---E-i~~A~~~Ga~~vK~FPa~~~---G-----G~~yikal~~plp~~~l 147 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGA---ATPS---E-VMALREEGYTVLKFFPAEQA---G-----GAAFLKALSSPLAGTFF 147 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCC---CCHH---H-HHHHHHCCCCEEEECCchhh---C-----CHHHHHHHHhhCCCCcE
Confidence 1112221000 1111 2 22345688888877642111 0 136788887654 7999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+..|||. ++++.+.++. |+..+..|..+.
T Consensus 148 ~ptGGV~-~~n~~~~l~a-g~~~~~ggs~l~ 176 (201)
T PRK06015 148 CPTGGIS-LKNARDYLSL-PNVVCVGGSWVA 176 (201)
T ss_pred EecCCCC-HHHHHHHHhC-CCeEEEEchhhC
Confidence 9999995 5899999995 555555565444
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.052 Score=50.49 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=77.7
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCC-cCCCCccccHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAI 129 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~-~~~~~~~~~~~~i 129 (287)
.-||..+.+.+++.++- ..+.||.+|-....+.++....++.+...|-.-+++ |..++.- .+. ....|+..+
T Consensus 181 qIgAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai 254 (335)
T PRK08673 181 QIGARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETAT-RNTLDLSAV 254 (335)
T ss_pred EECcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHH
Confidence 35788888888766654 358999999777767888888899999999876655 5222221 111 224788999
Q ss_pred HHHHhhCCCcEEEe----cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 130 KAVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 130 ~~i~~~~~ipVi~n----GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
..+++..+.|||+. +|.++ +..+..++. .||||+||=.-.
T Consensus 255 ~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~H~ 300 (335)
T PRK08673 255 PVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEVHP 300 (335)
T ss_pred HHHHHhcCCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEecC
Confidence 99998889999774 33321 244455665 699999997543
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.051 Score=49.86 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=81.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ ++..|+++|=+|- ..|-...-..+.-.++++.+++.+ ++||.+-+. . +..+++++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~ 93 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAG----------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEY 93 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHH
Confidence 6677777776 4467999999982 234444445555566666665544 589988874 3 77899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-cC-CCCHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GN-VRHMEDVQKCL 156 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-Gg-I~s~~da~~~l 156 (287)
++.+++.|++++.+..-.... .+...-.++++.+.+.+++||+ +| .| --+++.+.++.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999885432211 0001234667788888889965 33 23 33677777666
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.069 Score=48.58 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=96.4
Q ss_pred CCCCEEEEecCC------CHHHHHHHHHH-HcC-CC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAN------DPEILLNAARR-VEP-YC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~------~~~~~~~aA~~-~~~-g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-+ ..+.+...++. ++. .+ --|-||+ .|.. ...-+.||.|-+.+ +.+..
T Consensus 41 ~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T 120 (285)
T PRK07709 41 EKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETT 120 (285)
T ss_pred HCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 367999999653 23444444442 332 22 1366775 3442 23334566554442 33445
Q ss_pred HHHHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++++... ..+++|-.-+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+......||+.+++++
T Consensus 121 revv~~Ah-~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~ 199 (285)
T PRK07709 121 KKVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR 199 (285)
T ss_pred HHHHHHHH-HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH
Confidence 55555443 235665544321 11 1 224444444556889999987544444333333357999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+.+++|++.-||=..+ +++.++++ .|+.-|=|++.+
T Consensus 200 ~~~~iPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 236 (285)
T PRK07709 200 DFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 236 (285)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 9999999988876555 66777777 689888888765
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=53.47 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=37.2
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+.++.+++..++||++= ||.+++|+..+.+ .|+|+|.++
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~-~Gvd~I~VS 256 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALK-AGASGIWVT 256 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHH-cCcCEEEEC
Confidence 57999999999999999976 6999999999998 699998764
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=51.60 Aligned_cols=89 Identities=18% Similarity=0.314 Sum_probs=57.5
Q ss_pred HHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 66 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 66 ~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.-++.+++..+ .++.+-++ + .+-++.+.+.|+|+|-+-.. ..+.++++.+.+ .+||+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~---t----~eea~~A~~~gaDyI~ld~~------------~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVE---S----LEEAEEAAEAGADIIMLDNM------------KPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeC---C----HHHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhcCCCcEE
Confidence 34555555543 34444332 2 23355667899999988432 225566665544 38999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.||| +++.+.++.+ +|+|++.+|.-...-|+
T Consensus 227 AsGGI-~~~ni~~~a~-~Gvd~Isvgait~sa~~ 258 (265)
T TIGR00078 227 ASGGI-TLDNLEEYAE-TGVDVISSGALTHSVPA 258 (265)
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEeCHHHcCCCc
Confidence 99999 5899999987 79999999643332343
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.058 Score=49.64 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=83.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ ++..|+++|=+|- ..|-+..-..+.-.++++.+.+.+ ++||.+-+.. .+..++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~ 94 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA 94 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence 36777777777 4577999999982 345555555666667777666555 4888887632 35689999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-.... .+...-.++.+.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 95 ~a~~A~~~Gad~vlv~~P~y~~---~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMWLP---LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHHhCCCEEEECCCcCCC---CCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 9999999999999886432111 11123356777888877 58876 2 232335666666653
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.021 Score=51.75 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+-++.+.+.|+|+|.+. ....+.++++++..+ +||.+.||| +++.+.++.+ +|+|+|.+|.-..
T Consensus 199 eea~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 199 EQVREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33555668999999772 123366777776554 788899999 6899999998 7999999997554
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 265 sa~~ 268 (277)
T PRK08072 265 SVKA 268 (277)
T ss_pred CCcc
Confidence 3444
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.073 Score=48.39 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ +++. .+. |-||+ .|.. ...-+.||.|-+. .+.+..++
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP-V~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (284)
T PRK09195 41 LHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP-LALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKE 119 (284)
T ss_pred hCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 468999999652 3355555555 3333 332 55664 2222 1223445544333 23445555
Q ss_pred HHHHHhhccCCcEEEEecC-C-C-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++-.+ ..+++|-.=+.. | . + ..++.+..+.+++.|+|.+.|.=.|.-+.+......||+.+++++
T Consensus 120 vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~ 198 (284)
T PRK09195 120 VVDFCH-RFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIR 198 (284)
T ss_pred HHHHHH-HcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 555443 235555443321 1 0 0 123334444455889999977444433333222357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 236 (284)
T PRK09195 199 QWVNIPLVLHGASGLPTKDIQQTIK-LGICKVNVATELK 236 (284)
T ss_pred HHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 999999998775333 466777877 6999999988765
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=54.21 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCC-CCccccHHHH----HHH
Q 023070 62 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDG-KKFRADWNAI----KAV 132 (287)
Q Consensus 62 ~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~-~~~~~~~~~i----~~i 132 (287)
+...+.+..+++.. ++||.+-+--+.+.++..++++.++++|+|+|.+-=. +...+.. .....+.+.+ +.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 33333455565555 6799988755567889999999999999999988211 1100000 0001234444 555
Q ss_pred HhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 133 KNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 133 ~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.+++||+ .+-++.+..++.+.+.+.|+|||.+---+.
T Consensus 178 k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 178 NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 777789987 567888888888877778999998755444
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.037 Score=51.71 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=65.7
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCC-------CCcC----------------------------CCC
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKD----------------------------GKK 121 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~-------~~~~----------------------------~~~ 121 (287)
.|..+-+....+...+.++.++++++|++.|.+|--+. +.+. ...
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 56666555555667778899999999999998872111 0000 001
Q ss_pred ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 122 ~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+...|+.++.+++..++||++- ||.+++|+..+.+ .|+|+|.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~-~G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAE-YGVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHH-cCCCEEEEE
Confidence 2357999999999999999987 6789999998887 699999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=46.37 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=76.1
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+...|-.-|.+.-|-..- ++. ...|+..+..+
T Consensus 107 gArn~rn~~LL----~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf--~y~r~~~D~~~vp~~ 179 (264)
T PRK05198 107 PAFLCRQTDLL----VAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSF--GYNNLVVDMRGLPIM 179 (264)
T ss_pred CchhcchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCc--CCCCeeechhhhHHH
Confidence 67777777554 44443 489999997777888899999999999999999887665421 221 13577778777
Q ss_pred HhhCCCcEEEe---------------cCCCCHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN---------------GNVRHME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n---------------GgI~s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++ ..+|||+. ||-++.- -+...+. .|+||+|+= .--||.
T Consensus 180 k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA-~GadGl~iE--vHpdP~ 235 (264)
T PRK05198 180 RE-TGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVA-VGVAGLFIE--THPDPD 235 (264)
T ss_pred hh-CCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH-cCCCEEEEE--eCCCcc
Confidence 76 45999953 4444322 2334455 699999995 334554
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.067 Score=48.85 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=83.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ +++.|+|+|=++ |..|-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~ 90 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE 90 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence 36778888777 456799999988 2234444445555566666655544 488888874 35789999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee--cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n--GgI~s~~da~~~l~ 157 (287)
.++.+++.|+|++.+..-.... .+...-.++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 9999999999999886432211 0012235677888888889965 44 32347777777765
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.05 Score=49.23 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-.+ +++.|+++|=+|- ..|-+..-..+.-.++++.+++.+ ++||.+-+.. .+..++++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~ 86 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE 86 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence 36677777776 4567999999982 233333444555566666665554 4777766533 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHHh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEE 158 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~~ 158 (287)
+++.+++.|++++.+..-.... .+...-+++.+++.+.+++||+ . .|---|++.+.++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~~---~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYNK---PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEcccccCC---CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC
Confidence 9999999999999886432211 1112235677888888888987 2 4556678888777753
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.024 Score=51.41 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+-++.+.++|+|+|-+- ....+.++++.+.. ++||.++||| +++.+.++.+ +|+|++.+|.-..
T Consensus 200 eea~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt~ 265 (277)
T PRK05742 200 DELRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33556668999999663 12335566665544 7999999999 5899998887 7999999997554
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 266 s~~~ 269 (277)
T PRK05742 266 DVKA 269 (277)
T ss_pred CCcc
Confidence 4443
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.14 Score=44.81 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh--hh------cCc-----ccccccCChHHHHHHHHHHhh
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI--AR------RGN-----YGAFLMDNLPLVKSLVEKLAL 73 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~--~~------~~~-----~G~~l~~~~~~~~~iv~~v~~ 73 (287)
+.|++.=+.+.++++..+.++. ++.|+..|||-+-.|... .+ ... -|+.-.-+++.+...+++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a--- 90 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL--- 90 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc---
Confidence 4678877899999999999995 566899999998655421 00 011 111111223322222221
Q ss_pred ccCCcEEEEecCCCChhhHHHH-----------------HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 74 NLNVPVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 74 ~~~~pv~vKiR~g~~~~~~~~~-----------------a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
..++-|+ .+++ .+..+. +....++|++.+-+.+-. .....+++.++.-.
T Consensus 91 GA~FiVs----P~~~-~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~---------~~G~~~ikal~~p~ 156 (222)
T PRK07114 91 GANFIVT----PLFN-PDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGS---------VYGPGFVKAIKGPM 156 (222)
T ss_pred CCCEEEC----CCCC-HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECccc---------ccCHHHHHHHhccC
Confidence 0011110 0100 001111 112334555555444211 11246788887643
Q ss_pred -CCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 -RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 -~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++|++..|||.. .+++.+.++ .|+.+|.+|+.+..+.+
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl~-aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWFG-AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHHh-CCCEEEEEChhhcCccc
Confidence 699999999984 589999999 69999999988775444
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0079 Score=61.96 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=57.2
Q ss_pred CCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 103 GCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~---ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
|+|++.+.+-...... ..+.+..|+.++++++.++ +||++-||| +++++.++++ .|++||.+.++++..++..
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~-~Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA-TGIDGLCVVSAIMAAANPA 204 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhCCCCHH
Confidence 5999999765443322 1122357899999988887 999999999 7899999998 6999999999999766643
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=51.07 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+....+.|+|+|-+-..+. +.++++.+. .++||.+.||| +++.+.++.+ +|+|++.+|....
T Consensus 194 a~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~ 259 (269)
T cd01568 194 AEEALEAGADIIMLDNMSP------------EELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE-TGVDVISTGALTH 259 (269)
T ss_pred HHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEcHHHc
Confidence 4445578999998853221 334443333 37899999999 5799998887 7999999986555
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 260 s~~~ 263 (269)
T cd01568 260 SAPA 263 (269)
T ss_pred CCCc
Confidence 5544
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.062 Score=49.94 Aligned_cols=156 Identities=10% Similarity=0.101 Sum_probs=85.6
Q ss_pred CCCCEEEEecCCCH----H----HHHH-HHHHHcCCCCEEEE--eccCChhhhhcCcccccccCChHHHHHHHHHHhhcc
Q 023070 7 EDRPLFVQFCANDP----E----ILLN-AARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~----~----~~~~-aA~~~~~g~d~Idi--N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 75 (287)
.+.|+++.+.++.. + .+.. .-..+..|+|+|-+ |+|++... ...+.+.+++++. ...
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~-----------~ml~~l~~i~~ea-~~~ 191 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESR-----------RQIEEISEAFEEA-HEL 191 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHH-HHh
Confidence 46899999988521 1 1111 12245668887655 45533210 1122333444433 245
Q ss_pred CCcEEEEec-CCC---C-------hhhHHHHHHHHHHcCCCEEEEeccCC-CC------------c-CCCCccccHHHHH
Q 023070 76 NVPVSCKIR-VFP---N-------LQDTIKYAKMLEDAGCSLLAVHGRTR-DE------------K-DGKKFRADWNAIK 130 (287)
Q Consensus 76 ~~pv~vKiR-~g~---~-------~~~~~~~a~~l~~~G~~~I~vh~rt~-~~------------~-~~~~~~~~~~~i~ 130 (287)
++|+.+=+- .|. + .+.....++...+.|+|.|-+---+. .. . ........-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 889876221 121 1 12233445667899999997742111 00 0 0111112335567
Q ss_pred HHHhhC---CCcEEEecCCC-CHHHHH----HH---HHhcCccEEEEehhhhhCcc
Q 023070 131 AVKNAL---RIPVLANGNVR-HMEDVQ----KC---LEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 131 ~i~~~~---~ipVi~nGgI~-s~~da~----~~---l~~~gad~VmiGR~~l~nP~ 175 (287)
.+.+.+ ++||+..||=. +.+++. .+ ++ .|+.|+.+||-....|.
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR-AGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCcchhhchhhhcCCc
Confidence 777776 79999999866 444443 44 44 59999999998877664
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.035 Score=49.40 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=69.7
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCCCCccccHHHHHHHHhhCCCcEEEec----CCC
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVR 147 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG----gI~ 147 (287)
.++||-.|-.++.+.++++..|+-+...|-..+++.-| |.+.. .....|+..+..+|+.+++|||++= |=+
T Consensus 151 ~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~--TRntLDi~aV~~~kq~THLPVivDpSH~~Grr 228 (286)
T COG2876 151 QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKA--TRNTLDISAVPILKQETHLPVIVDPSHATGRR 228 (286)
T ss_pred cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccccccccc--ccceechHHHHHHHhhcCCCEEECCCCcccch
Confidence 47999999888889999999999999999999988643 33321 1225789999999999999999752 222
Q ss_pred CHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 148 HME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 148 s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++- -+..++. .||||+|+= .-.||.
T Consensus 229 ~lv~pla~AA~A-aGAdglmiE--VHp~P~ 255 (286)
T COG2876 229 DLVEPLAKAAIA-AGADGLMIE--VHPDPE 255 (286)
T ss_pred hhHHHHHHHHHh-ccCCeeEEE--ecCCcc
Confidence 221 2233344 599999984 555665
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.037 Score=51.99 Aligned_cols=43 Identities=23% Similarity=0.632 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
...|+.|+.+++..+.|||.-| |.+++|+..+.+ .|+|+|.++
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~-~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIE-LGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHH-CCcCEEEEC
Confidence 3579999999999999999875 999999999998 599999875
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.095 Score=47.68 Aligned_cols=162 Identities=19% Similarity=0.298 Sum_probs=92.7
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-.. .+.+...++ .++. .+ -|-||+ .|.. ...-+.||.|-+. .+.+..++
T Consensus 41 ~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~V-PValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~ 119 (284)
T PRK12857 41 EKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASV-PVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKK 119 (284)
T ss_pred hCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3689999997532 344544444 2332 33 255664 2432 2233455654333 24445555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-------C----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-------N----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-------~----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++..+ ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......|++.+++++
T Consensus 120 vv~~Ah-~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~ 198 (284)
T PRK12857 120 VVEIAH-AVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIK 198 (284)
T ss_pred HHHHHH-HcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 555543 234444433321 10 0 123344444456889999977444433333222357999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 236 (284)
T PRK12857 199 ELVNIPIVLHGSSGVPDEAIRKAIS-LGVRKVNIDTNIR 236 (284)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 9999999988864433 56677776 6898888887653
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.02 Score=50.87 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+.+|.|..- +.+ + ..+++.++.+++.+++||+..+.|-++.++.+... .|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~~~-F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---QSY-F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---CCc-C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 37789999999999999977521 111 1 35789999999999999999999999999999998 79999976544
Q ss_pred hhh
Q 023070 170 LLE 172 (287)
Q Consensus 170 ~l~ 172 (287)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.1 Score=48.13 Aligned_cols=149 Identities=13% Similarity=0.238 Sum_probs=78.4
Q ss_pred CCCCEEEEecCC-------C-HHHHHHHHH-HHcC-CCC-EEEEec-cCCh----hhhhcCccccccc--------CChH
Q 023070 7 EDRPLFVQFCAN-------D-PEILLNAAR-RVEP-YCD-YVDINL-GCPQ----RIARRGNYGAFLM--------DNLP 62 (287)
Q Consensus 7 ~~~p~~~Qi~g~-------~-~~~~~~aA~-~~~~-g~d-~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~ 62 (287)
...|+|+|+.-+ + ...+..+++ .++. ++. -|-||+ .|.. ...-+.+|.|-+. .+.+
T Consensus 47 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~ 126 (321)
T PRK07084 47 TKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVA 126 (321)
T ss_pred hCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHH
Confidence 468999999531 1 233444444 2332 322 366664 2322 1223455554433 2344
Q ss_pred HHHHHHHHHhhccCCcEEEEecC-C-C-------C--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-----CccccH
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRV-F-P-------N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADW 126 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~-g-~-------~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-----~~~~~~ 126 (287)
..+++++..+ ..+++|-.-+.. | . . ..++.+..+.+++.|+|.+.+.=.|.-+.+.. ....||
T Consensus 127 ~T~evv~~Ah-~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~ 205 (321)
T PRK07084 127 LTKKVVEYAH-QFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRF 205 (321)
T ss_pred HHHHHHHHHH-HcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCH
Confidence 4555555443 335555433321 1 0 0 12344444445578999997743333332221 224799
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 023070 127 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 127 ~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l 156 (287)
+.+++|++.+ ++|++.-||=..+++..+.+
T Consensus 206 d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~ 236 (321)
T PRK07084 206 DILEEIEKRIPGFPIVLHGSSSVPQEYVKTI 236 (321)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCcHHHHHHH
Confidence 9999999999 79999888765554433333
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.1 Score=47.28 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=92.6
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHHH-cC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAARRV-EP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~~~-~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-.. .+.+...++.+ +. .+ -|-||+ .|.. ....+.||.|-+. .+.+..++
T Consensus 36 ~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~V-PV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~ 114 (276)
T cd00947 36 TRSPVILQISEGAIKYAGLELLVAMVKAAAERASV-PVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKE 114 (276)
T ss_pred hCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3579999996432 34555555533 22 22 255554 2321 1223445555443 23445555
Q ss_pred HHHHHhhccCCcEEEEecC--CCC---------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHh
Q 023070 67 LVEKLALNLNVPVSCKIRV--FPN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKN 134 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~~---------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~ 134 (287)
+++-.+. .+++|-.=+.- |.. ..++.+..+.+++.|+|.+.|.=.|.-+.+.. ....||+.++++.+
T Consensus 115 vv~~ah~-~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~ 193 (276)
T cd00947 115 VVELAHA-YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAE 193 (276)
T ss_pred HHHHHHH-cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHH
Confidence 5555443 25555443321 110 12333444445578999997643333332222 23579999999999
Q ss_pred hCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 135 ALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 135 ~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++|++.-||=..+ +++.++.+ .|+.-|=+++.+
T Consensus 194 ~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 229 (276)
T cd00947 194 RVNVPLVLHGGSGIPDEQIRKAIK-LGVCKININTDL 229 (276)
T ss_pred HhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 999999988876555 55777777 699999888776
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.027 Score=52.01 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
++.-.+.++.+......-+.+ ..|.. ++..+.++.+.++| +|.|+|.--.. . ...-.+.++.+++..+-
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~AhG-----h-s~~~i~~ik~ir~~~p~ 150 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVANG-----Y-SEHFVEFVKLVREAFPE 150 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCCC-----c-HHHHHHHHHHHHhhCCC
Confidence 444444454433333223333 23333 33456677777774 99998842110 0 02345788999988766
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+..|+|-|++++..+++ .|||+|-+|
T Consensus 151 ~~viaGNV~T~e~a~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 151 HTIMAGNVVTGEMVEELIL-SGADIVKVG 178 (343)
T ss_pred CeEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 6777799999999999998 699999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.039 Score=50.40 Aligned_cols=92 Identities=21% Similarity=0.382 Sum_probs=62.5
Q ss_pred ccCCcEEEEecCCCChhhHHHHHHHHHHcC-CCEEEEeccCCCCcC-----CCCccccHHHHHHHHhhCCCcEEE--ecC
Q 023070 74 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NGN 145 (287)
Q Consensus 74 ~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipVi~--nGg 145 (287)
..+.|+.+-+. |.+.++..+.++.++++| +|+|.+......... ......-++.++.+++.+++||++ +.+
T Consensus 89 ~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 167 (301)
T PRK07259 89 EFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN 167 (301)
T ss_pred ccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34788888874 456788999999999999 999988432211111 000112356778888888899886 444
Q ss_pred CCCHHHHHHHHHhcCccEEEE
Q 023070 146 VRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~Vmi 166 (287)
+.+..++.+.+++.|+|++.+
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEE
Confidence 555556666777789999865
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.12 Score=47.13 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=80.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+. . +..+++++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~ 86 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAY 86 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHH
Confidence 6677777776 4567999999982 233333334444455566555544 589998874 3 67899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee--cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n--GgI~s~~da~~~l~ 157 (287)
++.++++|++++.+..-.... .+...-.++++.+.+.+++||+ +| |---+++.+.++.+
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999885332211 0011224667778888889975 32 32346777776665
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.035 Score=51.32 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=67.7
Q ss_pred cccC-ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 56 FLMD-NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 56 ~l~~-~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.+.+ +++...+.++.++.. .+ .+-+..|.+.++ .+.+..+.++| +|+|.+..-.. . ...-++.++.+
T Consensus 62 i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ahg-----~-s~~~~~~i~~i 131 (321)
T TIGR01306 62 IMHRFDEESRIPFIKDMQER-GL--FASISVGVKACE-YEFVTQLAEEALTPEYITIDIAHG-----H-SNSVINMIKHI 131 (321)
T ss_pred EEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCccC-----c-hHHHHHHHHHH
Confidence 4445 666655555554322 23 344445555444 45566777778 69887742110 0 02346789999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++..+.|++..|+|.+++++..+++ .|||+|.+|
T Consensus 132 ~~~~p~~~vi~GnV~t~e~a~~l~~-aGad~I~V~ 165 (321)
T TIGR01306 132 KTHLPDSFVIAGNVGTPEAVRELEN-AGADATKVG 165 (321)
T ss_pred HHhCCCCEEEEecCCCHHHHHHHHH-cCcCEEEEC
Confidence 9988899999999999999999998 699999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.092 Score=47.77 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=80.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-.+ +++.|+++|=+|. ..|-...-..+.=.++++.+++.+ ++||.+-+.. .+..++++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 87 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE 87 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence 36777777777 4567999999972 233333334444455555555444 4788766533 35688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
.++.++++|++++.+..-.... .+...-+++++.+.+.+++||+ . +|---+++.+.++.+
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 9999999999999886432211 0011234667778877888876 2 354556777776654
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.12 Score=47.44 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=80.9
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHHH-cCCC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARRV-EPYC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~~-~~g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+ ..+.+...++.+ +..- --|-||+ .|.. ....+.||.|-+.+ +.+..++
T Consensus 40 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (307)
T PRK05835 40 ENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSK 119 (307)
T ss_pred HCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 367999998653 234444455433 3221 2466664 2332 12334556554443 3344445
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCccccHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKA 131 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~~~~i~~ 131 (287)
+++-.+ ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+. .....||+.+++
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~ 198 (307)
T PRK05835 120 VVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198 (307)
T ss_pred HHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHH
Confidence 544433 234554443321 10 0 1233444445568899999775444333332 222579999999
Q ss_pred HHhhCCCcEEEecCCCCHHHHH
Q 023070 132 VKNALRIPVLANGNVRHMEDVQ 153 (287)
Q Consensus 132 i~~~~~ipVi~nGgI~s~~da~ 153 (287)
+++.+++|++.-||=..+++..
T Consensus 199 I~~~~~iPLVLHGgSGip~e~~ 220 (307)
T PRK05835 199 VKRLTNIPLVLHGASAIPDDVR 220 (307)
T ss_pred HHHHhCCCEEEeCCCCCchHHh
Confidence 9999999999999877777533
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.045 Score=50.80 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=69.4
Q ss_pred cccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HHH
Q 023070 56 FLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAI 129 (287)
Q Consensus 56 ~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~i 129 (287)
..+.+|+.. +-++.+++.. +.|+.+-+..... ..+..++.+.++..+++++.+|--.........+..++ +.+
T Consensus 92 ~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i 170 (326)
T cd02811 92 AALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERI 170 (326)
T ss_pred hhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHH
Confidence 345567765 5666676655 4888876554210 11334455566667899999984321111111123345 568
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 130 KAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 130 ~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 171 ~~l~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~vs 209 (326)
T cd02811 171 EELVKALSVPVIVKEVGFGISRETAKRLAD-AGVKAIDVA 209 (326)
T ss_pred HHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 8888888999997 455578888877666 799999875
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.13 Score=46.76 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHH-HcC-CC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARR-VEP-YC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~-~~~-g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-.. .+.+...++. ++. .+ --|-||+ .|+. ...-+.||.|-+.+ +.+..
T Consensus 41 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T 120 (286)
T PRK08610 41 ENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATT 120 (286)
T ss_pred HCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 3689999995532 3334444442 222 22 1366775 2433 22334566554432 34445
Q ss_pred HHHHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
.++++... ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+......|++.+++++
T Consensus 121 ~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~ 199 (286)
T PRK08610 121 KKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIG 199 (286)
T ss_pred HHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHH
Confidence 55555443 335555444321 11 0 123444444456899999977544444333333357899999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+.+++|++.-||=..+ +++.++++ .|+.-|=|++.+
T Consensus 200 ~~~~vPLVLHGgSG~~~e~~~~ai~-~GI~KiNi~T~l 236 (286)
T PRK08610 200 LSTGLPLVLHGGTGIPTKDIQKAIP-FGTAKINVNTEN 236 (286)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeccHH
Confidence 9999999988876555 66677777 689888887655
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=49.63 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=84.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh--hhh--cCcc-----cccccCChHHHHHHHHH-------
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR--IAR--RGNY-----GAFLMDNLPLVKSLVEK------- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~--~~~--~~~~-----G~~l~~~~~~~~~iv~~------- 70 (287)
+.+++.=|.+.++++..+.++. ++.|+..|||.+-.|.. ..+ +..| |+.-..+++.+.+.+++
T Consensus 7 ~~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 7 ENKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HHSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 3467888899999999999994 56789999999877651 111 1111 11112234433333332
Q ss_pred ----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 71 ----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 71 ----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
.++ .++|+.=-+ .+. -| +..+.++|++.+-+.+-..- + -..+++.++.-. +++
T Consensus 87 P~~~~~v~~~~~~-~~i~~iPG~---~Tp---tE-i~~A~~~G~~~vK~FPA~~~---G-----G~~~ik~l~~p~p~~~ 150 (196)
T PF01081_consen 87 PGFDPEVIEYARE-YGIPYIPGV---MTP---TE-IMQALEAGADIVKLFPAGAL---G-----GPSYIKALRGPFPDLP 150 (196)
T ss_dssp SS--HHHHHHHHH-HTSEEEEEE---SSH---HH-HHHHHHTT-SEEEETTTTTT---T-----HHHHHHHHHTTTTT-E
T ss_pred CCCCHHHHHHHHH-cCCcccCCc---CCH---HH-HHHHHHCCCCEEEEecchhc---C-----cHHHHHHHhccCCCCe
Confidence 111 122222111 011 12 22244677777766533221 0 147788888754 699
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++..|||. ++++.+.++ .|+.+|.+|+.+..+.
T Consensus 151 ~~ptGGV~-~~N~~~~l~-ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 151 FMPTGGVN-PDNLAEYLK-AGAVAVGGGSWLFPKD 183 (196)
T ss_dssp EEEBSS---TTTHHHHHT-STTBSEEEESGGGSHH
T ss_pred EEEcCCCC-HHHHHHHHh-CCCEEEEECchhcCHH
Confidence 99999996 489999998 5999999998665443
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.13 Score=49.15 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=93.6
Q ss_pred CCCCCEEEEecC---CCHHHHHHHHH-HHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcE
Q 023070 6 PEDRPLFVQFCA---NDPEILLNAAR-RVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPV 79 (287)
Q Consensus 6 ~~~~p~~~Qi~g---~~~~~~~~aA~-~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv 79 (287)
.+..|+..|++- .+++.+..-++ .+..| +..+.. +|-.. ..+....+.+.+-++++++ ..+..+
T Consensus 162 ~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~~---------~k~~~~~~~~~~ri~~lr~~g~~~~l 231 (408)
T TIGR01502 162 TNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLDG---------EKLLEYVKWLRDRIIKLGREGYAPIF 231 (408)
T ss_pred CCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCCH---------HHhhhhHHHHHHHHHHhhccCCCCeE
Confidence 456788888752 45777766554 66666 776664 54211 0111223344455555662 224567
Q ss_pred EEEecC------CCChhhHHHHHHHHHHcCCCE-EEEeccCCCCcCC-CCccccHHHHHHHHhh-----CCCcEEEecCC
Q 023070 80 SCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDG-KKFRADWNAIKAVKNA-----LRIPVLANGNV 146 (287)
Q Consensus 80 ~vKiR~------g~~~~~~~~~a~~l~~~G~~~-I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~-----~~ipVi~nGgI 146 (287)
.+...- +|+..++.++.+.+++....+ +.+ ++.-. .....+++.++++++. +++||++.=.+
T Consensus 232 ~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~ 306 (408)
T TIGR01502 232 HIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWC 306 (408)
T ss_pred EEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCC
Confidence 777764 788899999999998742211 222 11110 0001348888999877 58999999999
Q ss_pred CCHHHHHHHHHhcCccEEEE
Q 023070 147 RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~Vmi 166 (287)
.|++|+.++++...||.|.+
T Consensus 307 ~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 307 NTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCHHHHHHHHHhCCCCEEEe
Confidence 99999999999888999987
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.091 Score=47.68 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=80.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-.+ +++.|+++|=++- ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~ 85 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAISL 85 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHH
Confidence 6677777776 4577999998872 223333333444455555554433 4788877532 356789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHHh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi------~nGgI~s~~da~~~l~~ 158 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+.+++||+ ..|---+++.+.++.+.
T Consensus 86 a~~a~~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 999999999999886432211 1111234667788888888876 23545577777777653
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.016 Score=52.37 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=48.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++.+.+.|+|+|-+-.. ..+.++++.+.. ++|+.+.||| +++.+.++.+ +|+|++.+|.....-
T Consensus 195 a~~A~~~gaDyI~ld~~------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~~a 260 (268)
T cd01572 195 LKEALEAGADIIMLDNM------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHcCCCEEEECCc------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeecCC
Confidence 44556788998877422 246677776655 5999999999 5899998887 799999999755433
Q ss_pred c
Q 023070 174 P 174 (287)
Q Consensus 174 P 174 (287)
|
T Consensus 261 ~ 261 (268)
T cd01572 261 P 261 (268)
T ss_pred C
Confidence 3
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.11 Score=47.16 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhc-cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhC
Q 023070 62 PLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNAL 136 (287)
Q Consensus 62 ~~~~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~ 136 (287)
+...+-+...++. .+.|+.+-++. .+.++..+.++.++++|+++|.++..............+ .+.++.+++.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 4444444444443 47888887754 456788899999999999999997554332111110112 35677788878
Q ss_pred CCcEEE--ecCCC--CHHHHHHHHHhcCccEEEEe
Q 023070 137 RIPVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 137 ~ipVi~--nGgI~--s~~da~~~l~~~gad~VmiG 167 (287)
++||++ ++++. +..++.+.+.+.|+|++.+.
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 889874 34443 23344445566799999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=47.99 Aligned_cols=83 Identities=30% Similarity=0.322 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
...++..+..+.+...--..+++-.....+.+. ..|++.+..+......||+..|||.-.+|.+.+.. .|++||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~---G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKS---GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccccccc---CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeee
Confidence 346677777776654433333333322322222 37889999999888899999999999999998887 79999999
Q ss_pred ehhhhhC
Q 023070 167 AESLLEN 173 (287)
Q Consensus 167 GR~~l~n 173 (287)
|+++...
T Consensus 210 aTalh~G 216 (229)
T COG1411 210 ATALHEG 216 (229)
T ss_pred hhhhhcC
Confidence 9998653
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.067 Score=50.96 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++.+.++.+.++|+|.|++..-... +..-++.++++++.. +++|+ .|+|.|++++..+++ .|+|+|.+|=
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~-aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLIS-VGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHH-cCCCEEEECC
Confidence 34678899999999999998432211 123457888998875 56654 589999999999998 6999998873
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.16 Score=46.27 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=95.5
Q ss_pred CCCCEEEEecCC------CHHHHHHHHHH-Hc-CCCC-EEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAN------DPEILLNAARR-VE-PYCD-YVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~------~~~~~~~aA~~-~~-~g~d-~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-. .++.+..+.+. ++ .++. -|-||+ .|.. ....+.+|.|-+.+ +.+..
T Consensus 41 ~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T 120 (288)
T TIGR00167 41 EKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELT 120 (288)
T ss_pred HCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHH
Confidence 367999999653 34556665553 22 2222 266775 3433 22334556654443 34445
Q ss_pred HHHHHHHhhccCCcEEEEecC--C-CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc-ccHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--F-PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIK 130 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g-~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~-~~~~~i~ 130 (287)
+++++... ..+++|-.=+.. | .+ ..++.+..+-+++.|+|.+.|.=+|.-+.+..... .|++.++
T Consensus 121 ~~vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~ 199 (288)
T TIGR00167 121 KKVVERAH-KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLE 199 (288)
T ss_pred HHHHHHHH-HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHH
Confidence 55555433 235555443321 1 00 11333434444578999997754444333322223 7999999
Q ss_pred HHHhhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 131 AVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 131 ~i~~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
++++.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 200 ~I~~~v~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 200 EIQKYVNLPLVLHGGSGIPDEEIKKAIS-LGVVKVNIDTELQ 240 (288)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEcChHHH
Confidence 9999999999988876655 57777887 6898888887653
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.026 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.642 Sum_probs=35.3
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+.|+.+++..++|||.=| |.+++|+..+.+ .|+|+|.++
T Consensus 212 ~~w~~i~~~~~~~~~pvivKg-v~~~~da~~~~~-~G~~~i~vs 253 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIVKG-VLSPEDAKRAVD-AGVDGIDVS 253 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEEEE-E-SHHHHHHHHH-TT-SEEEEE
T ss_pred CCHHHHHHHhcccCCceEEEe-cccHHHHHHHHh-cCCCEEEec
Confidence 479999999999999999866 689999999998 599999886
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.16 Score=47.41 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCC---C--ccccHHHHHHHHhhC-CCcEEEecCCCCH-----------------
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGK---K--FRADWNAIKAVKNAL-RIPVLANGNVRHM----------------- 149 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~---~--~~~~~~~i~~i~~~~-~ipVi~nGgI~s~----------------- 149 (287)
.+..+.+++.|+|.+.|.=.|.-+.+.. + ...||+.+++|++.+ ++|++.-||=..+
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~ 253 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKET 253 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccccc
Confidence 4444455688999996633333222211 1 127899999999999 7999988876555
Q ss_pred -----HHHHHHHHhcCccEEEEehhh
Q 023070 150 -----EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 150 -----~da~~~l~~~gad~VmiGR~~ 170 (287)
+++.++++ .|+.-|=|++.+
T Consensus 254 ~g~p~e~i~~ai~-~GI~KVNi~Tdl 278 (347)
T TIGR01521 254 YGVPVEEIVEGIK-YGVRKVNIDTDL 278 (347)
T ss_pred CCCCHHHHHHHHH-CCCeeEEeChHH
Confidence 66677776 477777777655
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.037 Score=54.25 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+.++.+.++|++.|.|..-.. . ....|+.++++++.. ++||++ |+|.|++++..+.+ .|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G-----~-s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~-aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQG-----N-SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLID-AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCC-----C-chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHH-cCCCEEEEC
Confidence 447889999999999999864211 0 023478899999885 688777 99999999999998 599999865
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.18 Score=45.80 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-++ +++. |+++|=++- ..|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai 86 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ 86 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence 36777777777 5677 999998872 223333333444455555555443 4788876533 3567899
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
++++.+++.|++++.+..-.... .+...-+++++.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 99999999999999876432211 00012356778888888 88987 2 344457777776664
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.21 Score=43.40 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-----hhh
Q 023070 18 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-----LQD 91 (287)
Q Consensus 18 ~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-----~~~ 91 (287)
.++....++++. .+.|+..+++| .+ +.++.+++..++|+..-.+.+.+ ...
T Consensus 24 ~~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~ 80 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP 80 (219)
T ss_pred CcHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence 466778888885 45688887742 22 34455555568898643332221 011
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+.++.+.++|++.|.+....... .. +....+.++.+++..++|++. ++.|++++..+.+ .|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~-p~--~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~-~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPR-PD--GETLAELIKRIHEEYNCLLMA--DISTLEEALNAAK-LGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCC-CC--CcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHH-cCCCEEEcc
Confidence 2456788899999988775432210 00 013346677777665577776 6889999988877 599998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.19 Score=45.84 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=79.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .+..|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+.. .+..+++++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~ 87 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLEL 87 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHH
Confidence 6677777776 4567999998872 234333334444455555554433 4788876532 456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-..... +...-.++++.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~---~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKP---NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCC---CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 9999999999998875322110 0112346677888888 78876 3 244456777776664
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.17 Score=44.21 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+-+--.|+..+..-+ ..+.|+|.+.+|.. ...+.+.+.++++++ .+.-+.|-+-...
T Consensus 56 ~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~----------------a~~~~i~~~~~~~~~-~g~~~~V~llts~ 117 (216)
T PRK13306 56 DKIIVADTKIADAGKILAKM-AFEAGADWVTVICA----------------AHIPTIKAALKVAKE-FNGEIQIELYGNW 117 (216)
T ss_pred CCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCC----------------CCHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 46788888888988777744 56779999999942 134456666666553 2334555544444
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++ ++.+.+.|++.+.+|--...+..+. ..+...+.++++++ .+..+.+.|||+ ++.+.... ..|+|.+++
T Consensus 118 ~~~~----l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~-~~~~~~~~-~~~ad~~Vv 190 (216)
T PRK13306 118 TWEQ----AQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLV-VEDLKLFK-GIPVKTFIA 190 (216)
T ss_pred CHHH----HHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCC-HhhHHHHh-cCCCCEEEE
Confidence 3332 2345566776666663222221111 01233455555554 244488999997 45555543 459999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
||++...++
T Consensus 191 Gr~I~~a~d 199 (216)
T PRK13306 191 GRAIRGAAD 199 (216)
T ss_pred CCcccCCCC
Confidence 999887666
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.26 Score=44.95 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=78.9
Q ss_pred CCHHHHHHHHH-HHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-.+ .+..| +++|=+| |..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i 86 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 86 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence 36677777777 45678 9999888 2234333345555566666665544 4788877532 3568899
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+.++.+++.|+|++.+..-.... .+...-+++.+.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 87 ~la~~a~~~Gad~v~v~~P~y~~---~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHHhCCCEEEEeCCcCCC---CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 99999999999999885422111 00012245666676655 67765 3 244456666666654
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.089 Score=46.02 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=73.5
Q ss_pred HHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 65 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 65 ~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
.+.++++++.+ ++.+.+..+-+|+.+++.++++.+++.++.+| ++.-. +.|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWI-------EEPCA---PDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeE-------ECCCC---ccCHHHHHHHHhhCCCCEEe
Confidence 66777887776 47788888878999999999999999887777 22111 34688889999999999999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.=.+.++++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 777999999998888777888866
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.14 Score=46.75 Aligned_cols=162 Identities=19% Similarity=0.312 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCHHH-----HHHHHHHH-cC-CCCEEEEec--cCCh---hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCANDPEI-----LLNAARRV-EP-YCDYVDINL--GCPQ---RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~-----~~~aA~~~-~~-g~d~IdiN~--gcP~---~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+.... +...++.+ +. .. -|-||+ |... ....+.+|.|-+.+ +.+..++
T Consensus 40 ~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~v-PValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 118 (287)
T PF01116_consen 40 LNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASV-PVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITRE 118 (287)
T ss_dssp TTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTS-EEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHH
T ss_pred hCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCC-CEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHH
Confidence 4679999997644433 33333322 22 32 244443 2222 22334556554432 3334444
Q ss_pred HHHHHhhccCCcEEEEecC-C-C----C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC--CccccHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P----N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIK 130 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~----~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~--~~~~~~~~i~ 130 (287)
+++-.+ ..+++|-.=+.. + . . ..++.+..+.+++.|+|.+.|.=+|.-+.+.. ....|++.++
T Consensus 119 vv~~ah-~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~ 197 (287)
T PF01116_consen 119 VVEYAH-AYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLK 197 (287)
T ss_dssp HHHHHH-HTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHH
T ss_pred HHHhhh-hhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHH
Confidence 544433 235666555432 1 0 0 12445555556799999998854444333333 3357899999
Q ss_pred HHHhhC-CCcEEEecCCCCHH-HHHHHHHhcCccEEEEehhhh
Q 023070 131 AVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 131 ~i~~~~-~ipVi~nGgI~s~~-da~~~l~~~gad~VmiGR~~l 171 (287)
++++.+ ++|++.-||=..++ ++.++++ .|+.-|=+++.+.
T Consensus 198 ~I~~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 198 EIREAVPDIPLVLHGGSGLPDEQIRKAIK-NGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHTSEEEESSCTTS-HHHHHHHHH-TTEEEEEESHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCHHHHHHHHH-cCceEEEEehHHH
Confidence 999999 99999988765555 7777887 6999998887664
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.32 Score=41.97 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=74.4
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+.+.|...|+..+.+.++.+ +.|+|.|.+-.. + |. +..+..+..+.++.+++.+..++.+-+-.
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v---- 70 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--GH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMV---- 70 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--CC-cCCCcCcCHHHHHHHHhcCCCcEEEEeee----
Confidence 67889999999999998855 568999999421 1 11 11121233556666665444443333222
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-Vi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..++++.+.++|++.++||+...+ .....++.+++. ++. .+..+.-.+.+.+++ +. .++|.+.++
T Consensus 71 ~d~~~~i~~~~~~g~d~v~vh~~~~~--------~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~-~~-~~~d~i~~~ 138 (220)
T PRK05581 71 ENPDRYVPDFAKAGADIITFHVEASE--------HIHRLLQLIKSA-GIKAGLVLNPATPLEPLED-VL-DLLDLVLLM 138 (220)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeccch--------hHHHHHHHHHHc-CCEEEEEECCCCCHHHHHH-HH-hhCCEEEEE
Confidence 13444556667999999999986321 122445555543 433 333322233444444 43 258988775
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.3 Score=45.19 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=82.6
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
|...+++.+.+-++.. .||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 4445788777666544 788888887641 23444556666776654 455666666679999999
Q ss_pred HHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++ .++.+| +|. . .+++..+++++.+++||.+.=.+.++++. ..+. .++|.|.+
T Consensus 175 ~~~~~l~~~~~~~i~~i-------EqP--~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~~-~~~~-~~~d~i~i 236 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFL-------EEP--C---KTPDDSRAFARATGIAIAWDESLREPDFQ-FEAE-PGVRAIVI 236 (322)
T ss_pred HHHHHhhhhcCCCccEE-------ECC--C---CCHHHHHHHHHhCCCCEEECCCCCchhhh-hhhc-CCCCEEEE
Confidence 99999998 777766 221 1 12445678888899999998889988643 3333 47887644
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.053 Score=46.90 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|++.+-|+-++. ..++.|+++++..+--+++.|.|.|+++++.+++ .|++.++.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~---------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~-aGA~Fivs 86 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTP---------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD-AGAQFIVS 86 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-cCCCEEEC
Confidence 4678899999999999999999986653 3357788888766545789999999999999998 59999954
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
=+ .||.+.+..+
T Consensus 87 -P~--~~~~v~~~~~ 98 (204)
T TIGR01182 87 -PG--LTPELAKHAQ 98 (204)
T ss_pred -CC--CCHHHHHHHH
Confidence 22 3888776554
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.23 Score=45.20 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=80.5
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
|.+.+.+-.+ ++. .|+++|=++- ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~ 90 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQE 90 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHH
Confidence 6777777777 557 7999999872 233333334454555666555544 4788876532 35688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ .| |---+++.+.++.+
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 9999999999999887432211 1111235677788888888876 32 43446777766654
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.49 Score=41.45 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
++.....+..++...++..+.+-++.+ +.|++.|.+.. ..+.| ..+..+-.++++++++.++.++.+-
T Consensus 3 ~~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f----~~~~~~g~~~~~~l~~~~~~~~~vh 71 (229)
T PLN02334 3 FSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHF----VPNLTIGPPVVKALRKHTDAPLDCH 71 (229)
T ss_pred cccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCc----CCccccCHHHHHHHHhcCCCcEEEE
Confidence 344455678888888888888877755 45899988853 11111 1111111256666666666665555
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccC-CCCcCCCCccccHHHHHHHHhhCCCcEEEecCC-CCHHHHHHHHHhcC
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-RDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETG 160 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt-~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI-~s~~da~~~l~~~g 160 (287)
+-. .++.++.+.+.++|++++++|... .. ......++.+++. ++-+-.+-.- +..+.+.+.+..+|
T Consensus 72 lmv----~~p~d~~~~~~~~gad~v~vH~~q~~~-------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~ 139 (229)
T PLN02334 72 LMV----TNPEDYVPDFAKAGASIFTFHIEQAST-------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGL 139 (229)
T ss_pred ecc----CCHHHHHHHHHHcCCCEEEEeeccccc-------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccC
Confidence 422 233445666678999999999772 11 1113455666553 3222222222 23445555555323
Q ss_pred ccEEEEeh
Q 023070 161 CEGVLSAE 168 (287)
Q Consensus 161 ad~VmiGR 168 (287)
+|.|++|.
T Consensus 140 ~Dyi~~~~ 147 (229)
T PLN02334 140 VDMVLVMS 147 (229)
T ss_pred CCEEEEEE
Confidence 99999863
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.042 Score=49.69 Aligned_cols=63 Identities=13% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+..+.+.|+|+|-+-.... .++ +.++.+++. .++|+++.||| +++.+.++.+ +|+|+|++|.-
T Consensus 196 a~~A~~~gaD~I~ld~~~p---------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 196 ALAAAEAGADILQLDKFSP---------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred HHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChh
Confidence 3445589999998863322 122 233334433 36999999999 7899999988 79999977654
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.46 Score=43.04 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=89.9
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHHHH-cCCCCEEEEec-cCChhhhhcCc-ccccccCChHHHHHHHHHHhhcc-CCcE
Q 023070 7 EDRPLFVQF---CANDPEILLNAARRV-EPYCDYVDINL-GCPQRIARRGN-YGAFLMDNLPLVKSLVEKLALNL-NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi---~g~~~~~~~~aA~~~-~~g~d~IdiN~-gcP~~~~~~~~-~G~~l~~~~~~~~~iv~~v~~~~-~~pv 79 (287)
.+.||+|-+ +|+ |...++.++.+ +.|+.+|.|-- --|.+ .++ -|..+. +++...+-|++++++. +.++
T Consensus 77 ~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~---cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~f 151 (289)
T COG2513 77 VDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKR---CGHLPGKELV-SIDEMVDRIKAAVEARRDPDF 151 (289)
T ss_pred cCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchh---cCCCCCCCcC-CHHHHHHHHHHHHHhccCCCe
Confidence 467888877 445 77888877744 56998888851 11111 111 123333 3444444444444443 5566
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHH
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDV 152 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da 152 (287)
.+--|.. ...+++++=++...++|+|.|-.++. .+.+.++++.+.+++|+.+| .|-+-.-++
T Consensus 152 vi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al-----------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~ 220 (289)
T COG2513 152 VIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEAL-----------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTV 220 (289)
T ss_pred EEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccC-----------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCH
Confidence 6655651 23678889999999999999977755 34578899999988776555 232211222
Q ss_pred HHHHHhcCccEEEEehhh
Q 023070 153 QKCLEETGCEGVLSAESL 170 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~ 170 (287)
. -|+..|++.|..|-..
T Consensus 221 ~-~L~~~Gv~~V~~~~~~ 237 (289)
T COG2513 221 A-ELAELGVKRVSYGLTA 237 (289)
T ss_pred H-HHHhcCceEEEECcHH
Confidence 3 3335799999987443
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.066 Score=49.64 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccC-ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC--CEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 56 FLMD-NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 56 ~l~~-~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~--~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.+.+ +++.....++.+. ...+.+-+..+.+.+ ..+-+..+.++|+ |.|.|..-.. ....-.+.++++
T Consensus 65 ~~~k~~~e~~~~~~r~~~---~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~i 134 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMH---EQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHI 134 (326)
T ss_pred EEecCCHHHHHHHHHhcc---ccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHH
Confidence 3445 6666555554432 222344444444433 4466777888855 9999842211 012335779999
Q ss_pred HhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++..+ +||++ |+|.|++++..+.+ .|||++.+|
T Consensus 135 r~~~p~~~vi~-g~V~t~e~a~~l~~-aGad~i~vg 168 (326)
T PRK05458 135 KKHLPETFVIA-GNVGTPEAVRELEN-AGADATKVG 168 (326)
T ss_pred HhhCCCCeEEE-EecCCHHHHHHHHH-cCcCEEEEC
Confidence 98875 55554 88999999998888 699999877
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.064 Score=46.29 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=68.7
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+..=+| +.+.+++.++++.+.+.|+..|-|+-++. ...+.|+++++..+--+++.|-|.|.++++++++
T Consensus 6 vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~- 74 (201)
T PRK06015 6 VIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK- 74 (201)
T ss_pred EEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH-
Confidence 333344 35678999999999999999999986643 3357788888766556899999999999999998
Q ss_pred cCccEEEEehhhhhCccchhchh
Q 023070 159 TGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.|++.++.= -.||.+.+..+
T Consensus 75 aGA~FivSP---~~~~~vi~~a~ 94 (201)
T PRK06015 75 AGSRFIVSP---GTTQELLAAAN 94 (201)
T ss_pred cCCCEEECC---CCCHHHHHHHH
Confidence 599998752 35777776544
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.05 Score=46.75 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|+..+-|+-|+. .-++.|+.+++..+--+++.|.|.|.++++++++ .||+.++.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~---------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~-aGA~FivS 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTP---------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA-AGAQFIVS 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTST---------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH-HT-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH-cCCCEEEC
Confidence 4568999999999999999999997753 2357888888765546899999999999999999 59999875
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
= -.||.+.+..+.
T Consensus 87 P---~~~~~v~~~~~~ 99 (196)
T PF01081_consen 87 P---GFDPEVIEYARE 99 (196)
T ss_dssp S---S--HHHHHHHHH
T ss_pred C---CCCHHHHHHHHH
Confidence 2 357877765543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.2 Score=46.76 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCC----------------
Q 023070 91 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRH---------------- 148 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s---------------- 148 (287)
++.+..+.+++.|+|.+.| ||.........+...||+.+++|++.+ ++|++.-||=..
T Consensus 174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 3445555566899999965 655443100000127899999999999 799998886544
Q ss_pred ------HHHHHHHHHhcCccEEEEehhh
Q 023070 149 ------MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 149 ------~~da~~~l~~~gad~VmiGR~~ 170 (287)
.++++++++ .|+.-|=|++.+
T Consensus 254 ~~~G~~~e~i~~ai~-~GI~KINi~Tdl 280 (347)
T PRK09196 254 ETYGVPVEEIQEGIK-HGVRKVNIDTDL 280 (347)
T ss_pred ccCCCCHHHHHHHHH-CCCceEEeChHH
Confidence 366677776 477777777655
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.11 Score=50.87 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
..+|.+.+++|+|.||||+++..+ .++.+..+|+++++.+++||++..
T Consensus 168 ~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 168 EGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence 334445678899999999775432 345688999999887789999984
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.28 Score=44.24 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++. .++.||-+|-..+.+.++....++.+...|-.-|.+.-|-... ++. ...|+..+..+
T Consensus 113 gAr~~rqtdLL----~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tF--gy~~lv~D~r~ip~m 185 (290)
T PLN03033 113 PAFLCRQTDLL----VAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMF--GYNDLIVDPRNLEWM 185 (290)
T ss_pred CcHHHHHHHHH----HHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc--CCCCcccchhhhHHH
Confidence 56666665554 4433 3589999998778888999999999999999999887665422 221 23577777777
Q ss_pred HhhCCCcEEEe--------------------cCCCCH--HHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN--------------------GNVRHM--EDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n--------------------GgI~s~--~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++ +++|||.- ||-+.. .-+..++. .|+||+|+= .--||+
T Consensus 186 k~-~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA-~GaDGlfiE--vHpdP~ 246 (290)
T PLN03033 186 RE-ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVA-VGVDGIFME--VHDDPL 246 (290)
T ss_pred Hh-cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE--ecCCcc
Confidence 74 78999852 333322 12334444 699999995 334555
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.26 Score=44.34 Aligned_cols=102 Identities=26% Similarity=0.344 Sum_probs=66.8
Q ss_pred CEEEEec-C---CCHHH-HHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE---
Q 023070 10 PLFVQFC-A---NDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--- 80 (287)
Q Consensus 10 p~~~Qi~-g---~~~~~-~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--- 80 (287)
|+++-+. | .++++ +..+.+.++ .|+++|.|=-| ....+.|+++++. ++||.
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHi 137 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHL 137 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeee
Confidence 3665552 3 35555 455566666 68888888521 2455666666543 78885
Q ss_pred ------------EEecCCCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 81 ------------CKIRVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 81 ------------vKiR~g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
.|+ .|-+ .+++++-++.++++|++.|.+-+- +. +.++++.+.+++|+|+-|
T Consensus 138 GL~pq~~~~~gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----------~~--~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 138 GLTPQSVNVLGGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV----------PA--ELAKEITEALSIPTIGIG 203 (264)
T ss_pred cccceeecccCCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CH--HHHHHHHHhCCCCEEEec
Confidence 222 2323 236678888999999999988533 12 678899999999999866
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.5 Score=45.34 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCEEEEec--CCCHHHHHHHHHHHcCCCCEEEEe-ccCCh-hhhh-----c--Ccccccc-cCCh--------HHHHHHH
Q 023070 9 RPLFVQFC--ANDPEILLNAARRVEPYCDYVDIN-LGCPQ-RIAR-----R--GNYGAFL-MDNL--------PLVKSLV 68 (287)
Q Consensus 9 ~p~~~Qi~--g~~~~~~~~aA~~~~~g~d~IdiN-~gcP~-~~~~-----~--~~~G~~l-~~~~--------~~~~~iv 68 (287)
.|+++-=+ +.+.+.+.++. +.|+.+|.+- .. |+ .|.. + .+....+ +.++ +...+.+
T Consensus 15 nPv~~aag~~~~~~~~~~~~~---~~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~~~~~~~ 90 (420)
T PRK08318 15 NPFWLASAPPTNKYYNVARAF---EAGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLEVNLREI 90 (420)
T ss_pred CCcEeCCcCCCCCHHHHHHHH---HhCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHHHHHHHH
Confidence 46665543 34555555554 3488888776 22 44 2322 1 1111111 2223 2222333
Q ss_pred HHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC---CcCC-CCccccH----HHHHHHHhhCCCc
Q 023070 69 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---EKDG-KKFRADW----NAIKAVKNALRIP 139 (287)
Q Consensus 69 ~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~---~~~~-~~~~~~~----~~i~~i~~~~~ip 139 (287)
..+.+.. +.|+.+-+.-..+.++..++++.+++.|+|+|.+--.-.. .+.. .....+. +.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred HHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc
Confidence 4444433 5777776643326778899999999999999988311111 1100 0001233 4566666667889
Q ss_pred EE--EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VL--ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi--~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+ ..-++.+..++.+.+++.|+|+|.+
T Consensus 171 v~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 171 VIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred EEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 87 4566777778888787789999984
|
|
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.09 Score=50.10 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 61 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
++.-.+.++++|+++ ++.+.+....+|+..+++++++.+++.|+.++ ++.- .+.|++..+++++.+++
T Consensus 191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wi-------EEPl---~~~d~~~~~~L~~~~~~ 260 (394)
T PRK15440 191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWI-------EECL---PPDDYWGYRELKRNAPA 260 (394)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcce-------eCCC---CcccHHHHHHHHHhCCC
Confidence 455677888888877 57888888888999999999999999998877 2211 13578889999998775
Q ss_pred cEEE--ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 139 PVLA--NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 139 pVi~--nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
||.. .=.+.+..++..+++...+|.+++
T Consensus 261 ~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 261 GMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred CCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 5443 335779999999999777888865
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.26 Score=45.97 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCH----------------
Q 023070 92 TIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 149 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~---------------- 149 (287)
+.+..+.+++.|+|.+.| ||.........+...+|+.+++|++.+ ++|++.-||=..+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 344444556789999965 555432100001127899999999999 7999988876555
Q ss_pred ------HHHHHHHHhcCccEEEEehhh
Q 023070 150 ------EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 150 ------~da~~~l~~~gad~VmiGR~~ 170 (287)
++++++++ .|+.-|=|++.+
T Consensus 255 ~~g~~~e~~~kai~-~GI~KINi~Tdl 280 (347)
T PRK13399 255 TYGVPVEEIQRGIK-HGVRKVNIDTDI 280 (347)
T ss_pred cCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 56666666 466666666544
|
|
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.55 Score=43.37 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=84.7
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|+..-+...+|+++.+.++ .++.||..+.|..+ | + .-.+.++++++.+ ++.+.+.-+-+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~---------------~--~d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N---------------H--LISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C---------------c--hHHHHHHHHHHhCCCCeEEEECCCC
Confidence 45544554567787766555 56779999998752 1 1 1135567777665 34566666668
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+..++..+++.+.+.++.+| +|.-. +.+++.++... .++||.+.=.+.++.|+..+. ..+|.|.+
T Consensus 181 w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~ 246 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAML-------EQPLP---AQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI 246 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEE-------ECCCC---CCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence 999999999999999888777 22111 23455454433 479999988999999998874 35777665
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.041 Score=53.36 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+-++.+.++|++.|.|...... ...-++.++++++. .++||++ |+|.|++++..+++ .|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~-aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALID-AGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 4567788899999999988532211 12346789999987 5899998 99999999999998 599999765
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.33 Score=42.09 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=39.4
Q ss_pred CCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-hcCccEEEEehhh
Q 023070 104 CSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESL 170 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~-~~gad~VmiGR~~ 170 (287)
++++.+.... .. .+++| ..||+.++.+ ...|++..||| +++.+.+++. ..+..||=+.+|.
T Consensus 123 ~d~~LlDs~~-~~-~GGtG~~~dw~~~~~~---~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 123 VDLFIIDTPS-VS-YGGTGQTYDWTILKHI---KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred CCEEEEcCCC-CC-CCcCCcEeChHHhhhc---cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEccccc
Confidence 5666665422 11 12222 4689988765 34699999999 5788888765 3466777776665
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.28 Score=42.50 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=84.1
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+...+++++.+.+..+ +.|.|.||- . .+++.+.+ ++...++||+--++.....+ .
T Consensus 59 f~n~~~~~i~~i~~~~--~ld~VQlHG-------------~---e~~~~~~~----l~~~~~~~v~kai~v~~~~~---~ 113 (208)
T COG0135 59 FVNESIEEILEIAEEL--GLDAVQLHG-------------D---EDPEYIDQ----LKEELGVPVIKAISVSEEGD---L 113 (208)
T ss_pred ECCCCHHHHHHHHHhc--CCCEEEECC-------------C---CCHHHHHH----HHhhcCCceEEEEEeCCccc---h
Confidence 3445666666555432 579999992 1 45555444 44444677775555533212 1
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
........-++.+.+-.....+..+.....||+.+... ....|++..||+ +++.+.++++.....+|=+.+|.=.+|
T Consensus 114 ~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 114 ELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred hhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 12223345588888866544322222225799987776 457889999999 689999999964349999999988777
Q ss_pred c
Q 023070 175 A 175 (287)
Q Consensus 175 ~ 175 (287)
.
T Consensus 191 G 191 (208)
T COG0135 191 G 191 (208)
T ss_pred C
Confidence 3
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.4 Score=43.48 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 6 PEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
+...|+++++.+++.++..+.++.++ .|+|+|-+-. |.. . ..+.+-+.+-.+.|.+.+++|+.+--.
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~-------~---~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYY-------F---KPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STS-------S---SCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred cCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--ccc-------c---cchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 34579999999999999999998765 5999998853 431 1 124566778888888888999998754
Q ss_pred C---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcC
Q 023070 85 V---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 85 ~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. |.+ -..+...++.+.+ ..+-+..- ..|+..+.++..... --.+.+| +-..+...+. .|
T Consensus 136 P~~tg~~--ls~~~l~~L~~~~-nv~giK~s----------~~~~~~~~~~~~~~~~~~~v~~G---~d~~~~~~l~-~G 198 (289)
T PF00701_consen 136 PARTGND--LSPETLARLAKIP-NVVGIKDS----------SGDLERLIQLLRAVGPDFSVFCG---DDELLLPALA-AG 198 (289)
T ss_dssp HHHHSST--SHHHHHHHHHTST-TEEEEEES----------SSBHHHHHHHHHHSSTTSEEEES---SGGGHHHHHH-TT
T ss_pred CCccccC--CCHHHHHHHhcCC-cEEEEEcC----------chhHHHHHHHhhhcccCeeeecc---cccccccccc-cc
Confidence 3 322 2334455555532 22222210 234555555555532 2235555 2234556666 59
Q ss_pred ccEEEEehhhhhCccchhchh
Q 023070 161 CEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~ 181 (287)
++|++.|-+.+ -|.++.++-
T Consensus 199 ~~G~is~~~n~-~P~~~~~i~ 218 (289)
T PF00701_consen 199 ADGFISGLANV-FPELIVEIY 218 (289)
T ss_dssp SSEEEESGGGT-HHHHHHHHH
T ss_pred CCEEEEccccc-ChHHHHHHH
Confidence 99999997765 567666654
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.14 Score=46.67 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc---CCCC----c-cc--cHHHH
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DGKK----F-RA--DWNAI 129 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---~~~~----~-~~--~~~~i 129 (287)
..+...+.++.|...+++||++.+-.|-+..+....++.++++|+.+|.+-..+...+ .... . +. ..+.|
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 3445556678888888999999998886666778889999999999999943321110 0000 0 11 12334
Q ss_pred HHHHhh---CCCcEEEecCC----CCHHHHHHHH---HhcCccEEEEe
Q 023070 130 KAVKNA---LRIPVLANGNV----RHMEDVQKCL---EETGCEGVLSA 167 (287)
Q Consensus 130 ~~i~~~---~~ipVi~nGgI----~s~~da~~~l---~~~gad~VmiG 167 (287)
+.++++ .+++|++--+. ...+++.+.. .+.|||+|++=
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 444443 24677766332 2355554322 33699999984
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.2 Score=45.44 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=76.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+.. .+..+++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHH
Confidence 6677777777 4567999999872 223333333444455566555433 5788887533 356899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-.... .+...-.++++.+.+.+++||+ .| |---|++.+.++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHhhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 999999999999876432211 1111224667777777888875 33 44445666666554
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.17 Score=43.02 Aligned_cols=149 Identities=13% Similarity=0.247 Sum_probs=81.9
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc--EEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP--VSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p--v~vKiR~g 86 (287)
.+..+|..+|-..+++-.+ ++..|+|.+-+..- -+-+..+.-+---+++++|+..+.+ +.+-+-
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVM-----------Dg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmM-- 72 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVM-----------DGHFVPNITFGPPVVESLRKHTGADPFFDVHMM-- 72 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeee-----------cccccCCcccchHHHHHHHhccCCCcceeEEEe--
Confidence 3567888888777776555 55679998766510 0111112222233455566555444 222221
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEecc--------------------------CCCC-----------------cCCCCcc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGR--------------------------TRDE-----------------KDGKKFR 123 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~~-----------------~~~~~~~ 123 (287)
..+..+++..+.++|++.+++|-- |..+ ..++.|.
T Consensus 73 --V~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ 150 (224)
T KOG3111|consen 73 --VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ 150 (224)
T ss_pred --ecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh
Confidence 134445555555666666666521 1100 0011111
Q ss_pred ----ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 ----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 ----~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.-++-++.+++.. +.-+-+.||+. ++.+.++.+ .||+.+..|++.+.-++
T Consensus 151 kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~-AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 151 KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAE-AGANMIVAGSAVFGAAD 205 (224)
T ss_pred hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHH-cCCCEEEecceeecCCC
Confidence 1134466677554 44455999994 688888887 59999999998865433
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.31 Score=43.60 Aligned_cols=105 Identities=25% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCC-EEEEec-C---CCHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 8 DRP-LFVQFC-A---NDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 8 ~~p-~~~Qi~-g---~~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.| +++-+. | +++++..+.+ +.++ .|+++|.|=-| ....+.|++++++ ++||.
T Consensus 72 ~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~ 131 (254)
T cd06557 72 PRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVM 131 (254)
T ss_pred CCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCee
Confidence 457 566552 3 4577766654 5666 79999988521 2455556665533 67776
Q ss_pred EEecC--------------CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 81 CKIRV--------------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 81 vKiR~--------------g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
--+.+ +-+ .+++++-++.++++|++.|.+-+- + -+.++++.+.+++|+|+-
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----------~--~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----------P--AELAKEITEALSIPTIGI 199 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------C--HHHHHHHHHhCCCCEEEe
Confidence 32221 112 245677888899999999988543 1 157889999999999987
Q ss_pred c
Q 023070 144 G 144 (287)
Q Consensus 144 G 144 (287)
|
T Consensus 200 G 200 (254)
T cd06557 200 G 200 (254)
T ss_pred c
Confidence 6
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.64 Score=43.82 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=89.4
Q ss_pred CCCCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--C
Q 023070 6 PEDRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--V 77 (287)
Q Consensus 6 ~~~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~ 77 (287)
-.++|++.-+ .|-+|+.+++.+. .+..|+|.|-.+ ++.+.. +.+.++.+.+.+.+++..+.++ +
T Consensus 123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 3578877544 2789999999988 456689998443 332221 1122455566666666665554 4
Q ss_pred cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEe----cC-------
Q 023070 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN----GN------- 145 (287)
Q Consensus 78 pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~n----Gg------- 145 (287)
++.+-+. -+.++..+-++.++++|++++-|..-+ .-|..+..+++... +||.+- |-
T Consensus 195 ~y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~~~~----------~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~ 262 (364)
T cd08210 195 LYAPNVT--GPPTQLLERARFAKEAGAGGVLIAPGL----------TGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDG 262 (364)
T ss_pred eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeeccc----------chHHHHHHHHhcCCCcEEEEccccccccccCCCc
Confidence 5555543 345688888999999999999775332 23456667777666 887754 22
Q ss_pred CCCHHHHHHHHHhcCccEEEEe
Q 023070 146 VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiG 167 (287)
|...--..++.+..|+|.++++
T Consensus 263 is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeC
Confidence 2211235555666799988654
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.76 Score=40.04 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=83.6
Q ss_pred EEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC----C-
Q 023070 13 VQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----F- 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----g- 86 (287)
|.|.+.+.+++.+.++.+.. ++|.|||-+-+ +.. ...+.+.+.+..+++.+++|+.+=+|. |
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~---------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY---------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG---------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc---------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 67889999999888876655 99999998531 111 467788888999988889999998886 2
Q ss_pred C--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHHHHHHH---
Q 023070 87 P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLE--- 157 (287)
Q Consensus 87 ~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da~~~l~--- 157 (287)
+ +.++-.++.+.+.+.|+++|.|--.... ..... .......+..||++=- -.+.+++.+.++
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~--------~~~~~-~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFP--------DDLKS-RLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQ 140 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH--------HHHHH-HHHHHHTTSEEEEEEEESS---THHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccch--------hHHHH-HHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1 3356678899999999999999533111 11111 2333345677776643 445544544443
Q ss_pred hcCccEEEEe
Q 023070 158 ETGCEGVLSA 167 (287)
Q Consensus 158 ~~gad~VmiG 167 (287)
..|||.|=+.
T Consensus 141 ~~gadivKia 150 (224)
T PF01487_consen 141 ELGADIVKIA 150 (224)
T ss_dssp HTT-SEEEEE
T ss_pred hcCCCeEEEE
Confidence 3577765443
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.54 Score=43.71 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=72.8
Q ss_pred ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC---EEEEeccCCCCc
Q 023070 41 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEK 117 (287)
Q Consensus 41 ~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~---~I~vh~rt~~~~ 117 (287)
+|+|.-+ -||.=+.+.+++..+-+ .+.||.++... .+.++....++.+.+.|.. .+.+|..+..+.
T Consensus 108 ~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~ 176 (329)
T TIGR03569 108 LGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPA 176 (329)
T ss_pred cCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCC
Confidence 5566632 35555777777666543 48999999665 4677888888888899985 667786543221
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.....|+..|..+++..++||..++--....-...+.. .||+
T Consensus 177 --~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAva-lGA~ 218 (329)
T TIGR03569 177 --PFEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVA-LGAT 218 (329)
T ss_pred --CcccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHH-cCCC
Confidence 11247899999999988999998865444444444444 4777
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.87 Score=39.53 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=78.1
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+...+++.+.+.++ +.+.|.|.||-. .+++. ++.+++..++++.-.++.... .+...
T Consensus 61 f~~~~~~~i~~~~~--~~~~d~vQLHg~----------------e~~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~ 117 (210)
T PRK01222 61 FVNASDEEIDEIVE--TVPLDLLQLHGD----------------ETPEF----CRQLKRRYGLPVIKALRVRSA-GDLEA 117 (210)
T ss_pred EeCCCHHHHHHHHH--hcCCCEEEECCC----------------CCHHH----HHHHHhhcCCcEEEEEecCCH-HHHHH
Confidence 33567777766654 346799999832 12333 345554456677655555322 12111
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+... ...+|++.+...+. . .+++| ..||+.+. +..+.|++..||| +++.+.++++..+..||=+.+|.=..
T Consensus 118 -~~~~-~~~~d~~L~Ds~~~-~-~GGtG~~~dw~~l~---~~~~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~ 189 (210)
T PRK01222 118 -AAAY-YGDADGLLLDAYVG-L-PGGTGKTFDWSLLP---AGLAKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESA 189 (210)
T ss_pred -HHhh-hccCCEEEEcCCCC-C-CCCCCCccchHHhh---hccCCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECC
Confidence 1111 23578888875543 1 12222 46898772 1236799999999 68999999986688888887776544
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
|.
T Consensus 190 ~G 191 (210)
T PRK01222 190 PG 191 (210)
T ss_pred CC
Confidence 43
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.37 Score=43.11 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEecCC---CChhhHHHHHHHH-H
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYAKML-E 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKiR~g---~~~~~~~~~a~~l-~ 100 (287)
|++++ .|+|.|= .|.......- ++-....-..+.+...+++|++.++.| |++.+-.| .+.+++++.+.++ +
T Consensus 25 A~l~e~aG~d~i~--vGds~~~~~l-G~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 25 AKLADEAGVDVIL--VGDSLGMVVL-GYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHc-CCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 45544 5999994 4555443332 244444556777888888888888889 78777533 2355666655554 4
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
++|+++|.+-+.. ...+.|+.+++ .++||+ ..||. ++.+.+.+++ ++.
T Consensus 102 ~aGa~aVkiEd~~----------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 102 EAGADAVKLEGGA----------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 5999999996531 12244555553 378888 55654 2443333333 346
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
|||++.+
T Consensus 171 GA~~i~l 177 (254)
T cd06557 171 GAFALVL 177 (254)
T ss_pred CCCEEEE
Confidence 9999877
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=43.77 Aligned_cols=128 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCC--EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d--~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.+|+.|.+.+.+.+.|+.+..++. .|.| |.+. .-.+.++.+++. ++++.+-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~-- 108 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTA-- 108 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEE--
Confidence 4689999999999999999986654332 2333 3321 123344444433 44444331
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHh---hCCCc-EEEecCCCCHHHHHHHHHhcC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKN---ALRIP-VLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~---~~~ip-Vi~nGgI~s~~da~~~l~~~g 160 (287)
-.+.. -+..+.++|+++|... ||-.+. +. .-++.++++.+ ..+++ =+...+++++.++.+++. .|
T Consensus 109 V~s~~----Qa~~Aa~AGA~yvsP~vgR~~~~--g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~-~G 178 (211)
T cd00956 109 IFSAA----QALLAAKAGATYVSPFVGRIDDL--GG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL-AG 178 (211)
T ss_pred ecCHH----HHHHHHHcCCCEEEEecChHhhc--CC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH-cC
Confidence 11222 3445667899998664 554432 11 22344444443 33433 355678999999999888 59
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
||.|-+.
T Consensus 179 ad~vTv~ 185 (211)
T cd00956 179 ADAITLP 185 (211)
T ss_pred CCEEEeC
Confidence 9999985
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.49 Score=41.11 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=78.5
Q ss_pred EEEEecC----CCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 11 LFVQFCA----NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g----~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+..|.-- +++++..+.|+.+ +.|+.++.++ . .+.++++++.+++||....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~ 65 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKR 65 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEec
Confidence 3455544 3556777777754 4578888873 1 356677777778998644331
Q ss_pred C-CC----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 F-PN----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g-~~----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. ++ .....+.++.+.++|++.|.+-...... .. +....+.++.+++..++|++. ++.+.+++.++.+ .|
T Consensus 66 d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~--~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~-~G 139 (221)
T PRK01130 66 DYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PD--GETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQK-LG 139 (221)
T ss_pred CCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CC--CCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHH-cC
Confidence 1 00 0112356788899999988775432210 00 012235566666535677774 6789999987776 69
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
+|.+.++
T Consensus 140 ~d~i~~~ 146 (221)
T PRK01130 140 FDFIGTT 146 (221)
T ss_pred CCEEEcC
Confidence 9999774
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.29 Score=43.08 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=71.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
|=.+..+.+.+.++++.+++. ++.||+=+- ++ .+-++...+.|++.|-+|.......... .....+.+++
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~-gIrVSLFid--P~----~~qi~~A~~~GAd~VELhTG~yA~a~~~---~~~~el~~~~ 174 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDA-GIRVSLFID--PD----PEQIEAAAEVGADRIELHTGPYADAKTE---AEAAELERIA 174 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCc---chHHHHHHHH
Confidence 567778889999999998654 677765542 22 2334556689999999996554322111 1122233332
Q ss_pred ------hhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 134 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 134 ------~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
...++-|-+..|+ +++.+..+..-.+..=|-||.+++.+-
T Consensus 175 ~aa~~a~~lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 175 KAAKLAASLGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHHHHHHcCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 2346777777777 578887765556788899999888653
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.098 Score=45.32 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=66.4
Q ss_pred cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHH
Q 023070 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCL 156 (287)
Q Consensus 78 pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-Vi~nGgI~s~~da~~~l 156 (287)
++..=+|. .+.++..++++.+.+.|+..+-|+-++. ...+.++.+++..+.+ +++.|.|.+.+++..++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~---------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSP---------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 33333443 4668899999999999999999985543 2346788888776644 78999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhc
Q 023070 157 EETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
+ .|+|+++.+- .|+.+.+.
T Consensus 81 ~-aGA~fivsp~---~~~~v~~~ 99 (206)
T PRK09140 81 D-AGGRLIVTPN---TDPEVIRR 99 (206)
T ss_pred H-cCCCEEECCC---CCHHHHHH
Confidence 8 5999999863 45555443
|
|
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.3 Score=43.88 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 95 (287)
-.|++...+-|+ .+++|+|.||||++.+ ....++.+..+++.+++.+++||++... + .+.
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~------~-~~v 81 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP------N-PAA 81 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC------C-HHH
Confidence 356666666555 6788999999998732 1345778999999998888999998832 1 233
Q ss_pred HHHHHHc--CCCEE
Q 023070 96 AKMLEDA--GCSLL 107 (287)
Q Consensus 96 a~~l~~~--G~~~I 107 (287)
++...++ |++.|
T Consensus 82 ~eaaL~~~~G~~iI 95 (261)
T PRK07535 82 IEAGLKVAKGPPLI 95 (261)
T ss_pred HHHHHHhCCCCCEE
Confidence 4444444 87765
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.75 Score=41.63 Aligned_cols=126 Identities=13% Similarity=0.001 Sum_probs=79.9
Q ss_pred cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 16 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 16 ~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+.=|.+.+.+-++ +++.|+|+|=++- ..|-+..-..+.-.++++.+.+..+ +|.+-+. ..+..++++
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~ 82 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIE 82 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHH
Confidence 3458888888887 4567999999982 2344444455555666666655554 3544432 245689999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-...... +...-.++++.+.+ ++||+ + +|---+++.+.++.+
T Consensus 83 ~a~~a~~~Gad~v~v~~P~y~~~~--~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 83 LARAAKSFGIYAIASLPPYYFPGI--PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCC--CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 999999999999988643211100 00122356667766 78876 3 344567888777775
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=43.71 Aligned_cols=94 Identities=14% Similarity=0.296 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcc-CC-cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCc
Q 023070 64 VKSLVEKLALNL-NV-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIP 139 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~-pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ip 139 (287)
+.+.++++++.. .. +|.|-... .+-++.+.++|+|.|-+-.-+ +.++ +.++.++.. .++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-------~ee~~ea~~~g~d~I~lD~~~---------~~~~~~~v~~l~~~~~~v~ 129 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-------LEEAEEALEAGADIIMLDNMS---------PEDLKEAVEELRELNPRVK 129 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-------HHHHHHHHHTT-SEEEEES-C---------HHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-------HHHHHHHHHhCCCEEEecCcC---------HHHHHHHHHHHhhcCCcEE
Confidence 456666666654 23 36666432 233555667999999886332 1222 223333322 3588
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++|||+ ++.+.++.+ +|+|.+.+|...+.-|+
T Consensus 130 ie~SGGI~-~~ni~~ya~-~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 130 IEASGGIT-LENIAEYAK-TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEESSSS-TTTHHHHHH-TT-SEEEECHHHHSBE-
T ss_pred EEEECCCC-HHHHHHHHh-cCCCEEEcChhhcCCcc
Confidence 99999994 688888887 79999999987666554
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.28 Score=44.39 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~G 103 (287)
|++++ .||.+|-+- .|+-...-..|. | ....+.+.+.++.|...+++||+|.+-.|+. ..+....++.++++|
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~-~---~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDL-G---ITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCcc-c---cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Confidence 55554 599999886 222221111221 1 1236677888888888999999999988764 456778888999999
Q ss_pred CCEEEEeccCCC-------CcCCCCccccHHHHHHHHhhC-CCcEEEecC-----CCCHHHHH----HHHHhcCccEEEE
Q 023070 104 CSLLAVHGRTRD-------EKDGKKFRADWNAIKAVKNAL-RIPVLANGN-----VRHMEDVQ----KCLEETGCEGVLS 166 (287)
Q Consensus 104 ~~~I~vh~rt~~-------~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg-----I~s~~da~----~~l~~~gad~Vmi 166 (287)
+.++++-.-... .+.-.+...-.+.|+.+++.. +.+++.+.. +...+++. .+.+ .|||++..
T Consensus 107 ~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e-AGAD~if~ 185 (289)
T COG2513 107 AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE-AGADAIFP 185 (289)
T ss_pred cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH-cCCcEEcc
Confidence 999998432221 111111011123444455443 234443321 11134443 3333 69999876
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
..+.++..|+++..
T Consensus 186 --~al~~~e~i~~f~~ 199 (289)
T COG2513 186 --EALTDLEEIRAFAE 199 (289)
T ss_pred --ccCCCHHHHHHHHH
Confidence 57778887777654
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.42 E-value=2.5 Score=40.14 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred CHHHHHH-HHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCc--EEEEecCCCChhhHH
Q 023070 19 DPEILLN-AAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVP--VSCKIRVFPNLQDTI 93 (287)
Q Consensus 19 ~~~~~~~-aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~p--v~vKiR~g~~~~~~~ 93 (287)
-+|+.++ .++ .++.|.|.+.|- ..+||++-+..-++++++.- ..- ++.-+..-.+.+..+
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv 159 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYV 159 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHH
Confidence 4555555 344 456788877763 23688888888888877642 122 222223334667889
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe----cCCCCHHHHHHHHHhcCccEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n----GgI~s~~da~~~l~~~gad~Vm 165 (287)
++++.+.+.|+|.|++..-..- . ....-++.++.+|+.+++||..- -|+.. -...++++ .|+|++=
T Consensus 160 ~~akel~~~g~DSIciKDmaGl--l--tP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~-m~ylkAvE-AGvD~iD 229 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMAGL--L--TPYEAYELVKAIKKELPVPVELHTHATSGMAE-MTYLKAVE-AGVDGID 229 (472)
T ss_pred HHHHHHHHcCCCEEEeeccccc--C--ChHHHHHHHHHHHHhcCCeeEEecccccchHH-HHHHHHHH-hCcchhh
Confidence 9999999999999999643221 0 11245799999999999999854 45533 33445666 4898863
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.46 Score=43.07 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=75.9
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~ 87 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIH 87 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHH
Confidence 36777777777 456799999998 2234333334444455666555444 4788877532 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.++++|+|++.+..-.... .+...-.++++.+.+.. ||+ + .|---+++.+.++.+
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 9999999999999886432211 00012235556666654 765 2 233345666666654
|
|
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=45.50 Aligned_cols=79 Identities=24% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...+-|+ .+++|+|.||||+++..+....- ......+.+..+++.+++..++||++... + .+.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~----~~~~E~~rl~~~v~~l~~~~~~piSIDT~------~-~~v~ 89 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV----SVEEELERVIPVLRALAGEPDVPISVDTF------N-AEVA 89 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC----CHHHHHHHHHHHHHHHHhcCCCeEEEeCC------c-HHHH
Confidence 36677666665 67889999999987665421100 11223467888888888877899988731 1 3456
Q ss_pred HHHHHcCCCEE
Q 023070 97 KMLEDAGCSLL 107 (287)
Q Consensus 97 ~~l~~~G~~~I 107 (287)
+...+.|++.|
T Consensus 90 ~aaL~~g~~iI 100 (258)
T cd00423 90 EAALKAGADII 100 (258)
T ss_pred HHHHHhCCCEE
Confidence 66667787755
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.51 Score=43.01 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcC-C----CCccccHHHHHHHH
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKD-G----KKFRADWNAIKAVK 133 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~-~----~~~~~~~~~i~~i~ 133 (287)
.+...+.+....+..+.|+.+-+. |.+.++..+.++.+++++ +++|.+--....... + .....-.+.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 344444444444445678887763 567788899999999874 999988422111110 0 00011246677888
Q ss_pred hhCCCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 134 NALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 134 ~~~~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+++||.+= .++.+..++.+.+++.|+|++.+.
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 8778888754 344445555666777899999874
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.66 Score=40.05 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=78.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F--- 86 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g--- 86 (287)
++.++..++++...|. +.|+|-|||+-. .. .|+ | .|. ..+++.+++..++||.|=||+ |
T Consensus 2 ~lEvcv~s~~~a~~A~---~~GAdRiELc~~-----l~---~GG-l--TPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~ 65 (201)
T PF03932_consen 2 ILEVCVESLEDALAAE---AGGADRIELCSN-----LE---VGG-L--TPS--LGLIRQAREAVDIPVHVMIRPRGGDFV 65 (201)
T ss_dssp EEEEEESSHHHHHHHH---HTT-SEEEEEBT-----GG---GT--B-------HHHHHHHHHHTTSEEEEE--SSSS-S-
T ss_pred eEEEEeCCHHHHHHHH---HcCCCEEEECCC-----cc---CCC-c--CcC--HHHHHHHHhhcCCceEEEECCCCCCcc
Confidence 4556666766655543 579999999831 11 121 2 232 234555555778998888887 3
Q ss_pred CChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEec---CCCCHHHHHHHHHhc
Q 023070 87 PNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG---NVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nG---gI~s~~da~~~l~~~ 159 (287)
++.. ...+-++.+.++|++.+.+-.=+.+. ..|.+.++++.+.. +.|+...= -+.++..+.+.+...
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg------~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l 139 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG------EIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL 139 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS------SB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC------CcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc
Confidence 2222 23455677889999999886544432 47888888887754 68888654 456777777777667
Q ss_pred CccEEEEe
Q 023070 160 GCEGVLSA 167 (287)
Q Consensus 160 gad~VmiG 167 (287)
|++.|.-.
T Consensus 140 G~~rVLTS 147 (201)
T PF03932_consen 140 GFDRVLTS 147 (201)
T ss_dssp T-SEEEES
T ss_pred CCCEEECC
Confidence 99988754
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.13 Score=44.40 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCHHHHHHHH---HH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAA---RR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA---~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~ 93 (287)
.+++++.... +. .+.|+|+|-+=+.-|. |. =|.+.+.++++... +.|++. .|..+...+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d--------g~---iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTED--------GE---IDEEALEELIEAAG---GMPVTF-HRAFDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETT--------SS---B-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC--------CC---cCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHH
Confidence 4555555544 33 3469999887543221 11 35667777777653 688888 45544344566
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+-.+.+.+.|++.|--+|....- ....+.++++.+. -++.|+..|||+. +.+..+++.+|+.-+
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred HHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 66778888999999777665321 2345667766554 3688999999975 888888888888765
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.2 Score=37.89 Aligned_cols=129 Identities=22% Similarity=0.190 Sum_probs=81.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~~ 89 (287)
+++-|=--++++..+.++.+.++++.|+++. |. .+. +| .+.++.+++. .++|+.+-.-.. +.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~--~~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~~ 65 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGT--PL--IKS--EG----------MEAVRALREAFPDKIIVADLKTA-DA 65 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HH--HHH--hC----------HHHHHHHHHHCCCCEEEEEEEec-cc
Confidence 3455544578888888887766699999952 22 111 12 4566666664 477877632221 11
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe-cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n-GgI~s~~da~~~l~~~gad~VmiG 167 (287)
. ..+++.+.++|++++++|+.... ...-+.++.+++ .++++++. =+..|++++.+++. .|+|.|.++
T Consensus 66 ~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 66 G--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred c--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 1 23568888999999999975421 011234455554 47777664 67889999988666 599999885
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.38 Score=43.82 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=83.1
Q ss_pred HHHHc-CCCCEEEEeccCCh-hhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~-~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G 103 (287)
|++++ .||++|=+-=.+=. ..-..|. | ++ ..+.+.+.++.|...+++||++.+-.|. +..+....++.++++|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 44443 59999888621110 1111121 1 22 5566677788888888999999998875 3567778899999999
Q ss_pred CCEEEEeccCCCCcCCC-Ccc--cc----HHHHHHHHhhC-CCcEEEecCCC-----CHHHHHHHH---HhcCccEEEEe
Q 023070 104 CSLLAVHGRTRDEKDGK-KFR--AD----WNAIKAVKNAL-RIPVLANGNVR-----HMEDVQKCL---EETGCEGVLSA 167 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~-~~~--~~----~~~i~~i~~~~-~ipVi~nGgI~-----s~~da~~~l---~~~gad~VmiG 167 (287)
+.+|++-..+...+-+. .+. .+ ...|+.++++. +.+++.+.... ..+++.+-. .+.|||+|++-
T Consensus 102 ~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 102 AAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred CeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 99999965432111010 011 11 22333333332 34455444322 244443222 23599999983
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
.+.++...+++.
T Consensus 182 --g~~~~e~i~~~~ 193 (285)
T TIGR02317 182 --ALTSLEEFRQFA 193 (285)
T ss_pred --CCCCHHHHHHHH
Confidence 245555555443
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.17 Score=45.84 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh---CCCc
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA---LRIP 139 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~---~~ip 139 (287)
.+.++.+++.. ..+|.|-++ ..+-+..+.++|+|.|-+...+. .++ +.+..+++. .++.
T Consensus 170 ~~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~~---------e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMTP---------EEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCCH---------HHHHHHHHHHHhcCcCCCEE
Confidence 34444444432 345555542 23445566689999887764422 222 222223331 3577
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 234 leaSGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 234 IEVSGGI-TPENIEEYAK-LDVDVISLGALTHSVRN 267 (278)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 9999999 7899998887 79999999976553444
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.78 Score=39.24 Aligned_cols=126 Identities=22% Similarity=0.200 Sum_probs=76.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcE--EEEecCCC
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPV--SCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv--~vKiR~g~ 87 (287)
+++-+=..++++..+.++.+..|.+.|++.. |. ....-.++++.+++.. +..+ .+|+.
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~--~l--------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGT--PL--------------IKNEGIEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCC--HH--------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---
Confidence 4556667788998998887766899999941 11 1111235566665542 3334 44432
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc-HHHHHHHHhhCCCcEEEe-cCCCC-HHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLAN-GNVRH-MEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~~ipVi~n-GgI~s-~~da~~~l~~~gad~V 164 (287)
+... ..++.+.++|+++|++|+-+. ..+ -+.+..+++ .+++++.. =+..+ .+++..+.+ .|+|.|
T Consensus 63 d~~~--~~~~~~~~~Gad~i~vh~~~~--------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~-~g~d~v 130 (206)
T TIGR03128 63 DAGE--YEAEQAFAAGADIVTVLGVAD--------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKE-LGADYI 130 (206)
T ss_pred cchH--HHHHHHHHcCCCEEEEeccCC--------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHH-cCCCEE
Confidence 2121 137788899999999996532 111 234445444 57888764 23344 477777776 599999
Q ss_pred EEe
Q 023070 165 LSA 167 (287)
Q Consensus 165 miG 167 (287)
.+.
T Consensus 131 ~~~ 133 (206)
T TIGR03128 131 GVH 133 (206)
T ss_pred EEc
Confidence 774
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.28 Score=42.44 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++++.+++.+.+.|++.|-|+-|+. .-.+.|+.+++...--+|+.|=|-+++++.++.+ .|++.+..
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~-aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIA-AGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHH-cCCCEEEC
Confidence 4678999999999999999999987753 3458899999887766899999999999999998 59998763
Q ss_pred ehhhhhCccchh
Q 023070 167 AESLLENPALFA 178 (287)
Q Consensus 167 GR~~l~nP~lf~ 178 (287)
=+ -||.+.+
T Consensus 92 -P~--~~~ev~~ 100 (211)
T COG0800 92 -PG--LNPEVAK 100 (211)
T ss_pred -CC--CCHHHHH
Confidence 11 2555554
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=47.05 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHH--cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-C
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 137 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~--~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ 137 (287)
++.-.+.++.++.....-+.| ..|... +..+.++.+.+ +|+|.|+|.--.. . ...-.+.++.+++.. +
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~er~~~L~~~~~g~D~iviD~AhG-----h-s~~~i~~ik~ik~~~P~ 151 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADFEKTKQILALSPALNFICIDVANG-----Y-SEHFVQFVAKAREAWPD 151 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH-HHHHHHHHHHhcCCCCCEEEEECCCC-----c-HHHHHHHHHHHHHhCCC
Confidence 444555555555333222333 333343 33455666666 5999998842110 0 023467899999875 5
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++|| .|+|-|++-++.+++ .|||+|=+|=
T Consensus 152 ~~vI-aGNV~T~e~a~~Li~-aGAD~vKVGI 180 (346)
T PRK05096 152 KTIC-AGNVVTGEMVEELIL-SGADIVKVGI 180 (346)
T ss_pred CcEE-EecccCHHHHHHHHH-cCCCEEEEcc
Confidence 6655 499999999999888 6999986653
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=43.70 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=63.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++..++++.+.+.|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++ .|+|+++.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~-~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA-AGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-cCCCEEEc
Confidence 4567889999999999999999985432 3456788888876545688899999999999998 69999987
Q ss_pred ehhhhhCccchhch
Q 023070 167 AESLLENPALFAGF 180 (287)
Q Consensus 167 GR~~l~nP~lf~~~ 180 (287)
+- .+|.+....
T Consensus 83 p~---~~~~~~~~~ 93 (190)
T cd00452 83 PG---LDPEVVKAA 93 (190)
T ss_pred CC---CCHHHHHHH
Confidence 63 356655543
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.14 Score=44.65 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=66.5
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+| +.+.+++.++++.+.+.|++.|-|+-++. .-.+.|+.+++..+--+++.|-|.+.++++.+++ .|++
T Consensus 21 ~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~-aGA~ 89 (212)
T PRK05718 21 IV-INKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE-AGAQ 89 (212)
T ss_pred EE-cCCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH-cCCC
Confidence 44 45778999999999999999999984432 2357788888766556899999999999999998 5999
Q ss_pred EEEEehhhhhCccchhchh
Q 023070 163 GVLSAESLLENPALFAGFR 181 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~ 181 (287)
.++. --.+|.+.+..+
T Consensus 90 Fivs---P~~~~~vi~~a~ 105 (212)
T PRK05718 90 FIVS---PGLTPPLLKAAQ 105 (212)
T ss_pred EEEC---CCCCHHHHHHHH
Confidence 9875 235667666544
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.083 Score=51.88 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i-pVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.|.++|+|.|.|. +.... . ..-.+.++++++..+. -.+..|.|-|+++++.+++ .|||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g~-~---~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~-aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSEGY-S---EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE-AGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Ccccc-c---HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH-cCCCEEEECC
Confidence 356788999999999999886 22110 0 1235788899887653 2467799999999999998 6999998864
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.57 Score=41.57 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=85.3
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--ChhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~--~~~~~~~~a~~l~~~ 102 (287)
|++++ .|||.|=+-=. ..... -+|-....-..+.+...+++|++.+. .||++.+-.|. +.+++.+.++++.++
T Consensus 25 A~i~e~aG~dai~v~~s--~~a~~-~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a 101 (240)
T cd06556 25 AKQFADAGLNVMLVGDS--QGMTV-AGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA 101 (240)
T ss_pred HHHHHHcCCCEEEEChH--HHHHh-cCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 44444 48888877421 11111 12222222356777888888888775 79999998874 336788889999999
Q ss_pred CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC---------------CHHHHHHHH------HhcCc
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR---------------HMEDVQKCL------EETGC 161 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~---------------s~~da~~~l------~~~ga 161 (287)
|+++|.+-+.. ...+.++.+++. .+||++==|.. +.+.+.+++ ++.||
T Consensus 102 Ga~gv~iED~~----------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGA 170 (240)
T cd06556 102 GAAGVKIEGGE----------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGA 170 (240)
T ss_pred CCcEEEEcCcH----------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCC
Confidence 99999996531 122446666554 47888665551 223333333 34699
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
|+|.+= +. ++...+++.
T Consensus 171 d~i~~e-~~--~~e~~~~i~ 187 (240)
T cd06556 171 DLIVME-CV--PVELAKQIT 187 (240)
T ss_pred CEEEEc-CC--CHHHHHHHH
Confidence 999984 22 555555554
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.067 Score=52.19 Aligned_cols=70 Identities=33% Similarity=0.372 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
+..+.++.|.++|++.|.+..-.. .+ ..-.+.++++++.. ++|||+ |.+-|.+.+..+.+ .|||+|-+|=
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g-----~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~-~G~d~i~vg~ 295 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHG-----HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLE-AGANIIKVGV 295 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCC-----Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHH-hCCCEEEECC
Confidence 556888999999999998842211 00 23357788998864 799999 88999999999998 6999987653
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.084 Score=51.93 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+-++.|.++|+|.|.+..-. +. ...-|+.++++++.. +++|++ |+|.|.+++..+++ .|||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~-aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQ-AGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHH-cCcCEEEEC
Confidence 355678899999999999886421 11 124578999999875 455554 89999999999998 699999775
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.7 Score=42.94 Aligned_cols=100 Identities=15% Similarity=0.286 Sum_probs=66.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC-CEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~-~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
||.-+.+..++..+-+ .+.||.+|... .+.++....++.+.+.|. +.+.+|+.+.-+ ......|+..|..+
T Consensus 117 ~S~~~~n~~LL~~va~-----~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP--~~~~~~nL~~i~~l 188 (327)
T TIGR03586 117 ASFEITDLPLIRYVAK-----TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYP--APLEDANLRTIPDL 188 (327)
T ss_pred CCccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCC--CCcccCCHHHHHHH
Confidence 4544677777666543 48999999766 467788888888889998 456668643221 11224789999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
++..++||..++--....-...+.. .||+
T Consensus 189 k~~f~~pVG~SDHt~G~~~~~aAva-~GA~ 217 (327)
T TIGR03586 189 AERFNVPVGLSDHTLGILAPVAAVA-LGAC 217 (327)
T ss_pred HHHhCCCEEeeCCCCchHHHHHHHH-cCCC
Confidence 9988999977763333333334444 4776
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.42 Score=41.97 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~ 131 (287)
.|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|............ ...++.+..
T Consensus 101 gGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP--d----~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~ 173 (234)
T cd00003 101 GGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP--D----PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAK 173 (234)
T ss_pred ccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC--C----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHH
Confidence 3667778889999999998765 6777765422 2 234556679999999999654432211100 111222222
Q ss_pred ---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 132 ---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 132 ---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.....++-|-+..|+ +++.+..+.+-.+..=|-||.+++.+-
T Consensus 174 aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 174 AAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 222346767776777 578887777667889999999888654
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.47 Score=41.79 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i 132 (287)
|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|............ ...++.+...
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP--~----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~a 174 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAA-GIEVSLFIDA--D----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKA 174 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHC-CCEEEEEeCC--C----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHH
Confidence 556777889999999998654 6777655322 2 234556669999999999655432211100 1112222222
Q ss_pred ---HhhCCCcEEEecCCCCHHHHHHHHHhcC-ccEEEEehhhhhCc
Q 023070 133 ---KNALRIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENP 174 (287)
Q Consensus 133 ---~~~~~ipVi~nGgI~s~~da~~~l~~~g-ad~VmiGR~~l~nP 174 (287)
....++-|-+..|+ +++.+..+...-+ .+=|-||.+++.+-
T Consensus 175 a~~A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 175 SVHAHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADA 219 (237)
T ss_pred HHHHHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHH
Confidence 22356777777777 5788877766555 88899999988654
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.25 Score=45.13 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=84.0
Q ss_pred HHHHc-CCCCEEEEe-ccCC-hhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDIN-LGCP-QRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP-~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~ 102 (287)
|++++ .||++|-+- .++- ...-..|. | +-..+.+.+.++.|.+.+++||++.+-.|. +..+....++.++++
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 45554 599998775 2222 11111221 1 234566677888888889999999998875 556777889999999
Q ss_pred CCCEEEEeccCCCCcCCC-Ccc--cc-HHHHHHH---HhhC-CCcEEEec--CCCC---HHHHHHHH---HhcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDGK-KFR--AD-WNAIKAV---KNAL-RIPVLANG--NVRH---MEDVQKCL---EETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~-~~~--~~-~~~i~~i---~~~~-~ipVi~nG--gI~s---~~da~~~l---~~~gad~Vmi 166 (287)
|+.+|++-......+.+. .+. .+ -+.+.+| ++.. +.+++.+. +... .+++.+-. .+.|||+|++
T Consensus 106 Gaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi 185 (292)
T PRK11320 106 GAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP 185 (292)
T ss_pred CCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 999999954331100010 010 11 1333443 3332 34444443 3322 44443221 2369999998
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
- .+.++.-++++.
T Consensus 186 ~--~~~~~~~i~~~~ 198 (292)
T PRK11320 186 E--AMTELEMYRRFA 198 (292)
T ss_pred c--CCCCHHHHHHHH
Confidence 4 355666555443
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.2 Score=40.77 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEE
Q 023070 8 DRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSC 81 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~v 81 (287)
+.||++-+ +|+.+ ...+.++ ..+.|+.+|.|-=.. |..+--.. -|..-+-+++...+-|++++++ .+.++.+
T Consensus 75 ~lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~-~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I 152 (290)
T TIGR02321 75 SIPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRT-DGRQELVRIEEFQGKIAAATAARADRDFVV 152 (290)
T ss_pred CCCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCccccccc-CCCccccCHHHHHHHHHHHHHhCCCCCEEE
Confidence 56888776 35555 5777776 456799999997532 32210000 0211123444444555555443 3445555
Q ss_pred EecC-----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEec---CCCCHHH
Q 023070 82 KIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHMED 151 (287)
Q Consensus 82 KiR~-----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nG---gI~s~~d 151 (287)
--|+ +...+++++=++...++|+|.|-+++.. .+.+.++++.+.++ +||.... ...+.++
T Consensus 153 ~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~ 222 (290)
T TIGR02321 153 IARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD 222 (290)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH
Confidence 4444 2345788888999999999999998632 23466778877765 5886543 2334444
Q ss_pred HHHHHHhcC-ccEEEEehhh
Q 023070 152 VQKCLEETG-CEGVLSAESL 170 (287)
Q Consensus 152 a~~~l~~~g-ad~VmiGR~~ 170 (287)
+. + .| +..|..|-.+
T Consensus 223 l~---~-lg~~~~v~~g~~~ 238 (290)
T TIGR02321 223 IA---A-LSKVGIVIYGNHA 238 (290)
T ss_pred HH---H-hcCCcEEEEChHH
Confidence 33 2 34 6667777444
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.1 Score=50.88 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=73.6
Q ss_pred HHHHHHHhhccCCcE-EEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCc---------------------CCCC
Q 023070 65 KSLVEKLALNLNVPV-SCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------DGKK 121 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv-~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---------------------~~~~ 121 (287)
+++|+..|.. +.|+ .|-|..| ++.+++.++++.|-+.|+.++.+.+.+.++- ....
T Consensus 111 krLv~kara~-G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraG 189 (717)
T COG4981 111 KRLVQKARAS-GAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAG 189 (717)
T ss_pred HHHHHHHHhc-CCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccC
Confidence 4566665543 3333 2333444 4678889999999889999998876543220 0111
Q ss_pred ccccHH--------HHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----------cCccEEEEehhhhhCc
Q 023070 122 FRADWN--------AIKAVKNALRIPVLANGNVRHMEDVQKCLEE----------TGCEGVLSAESLLENP 174 (287)
Q Consensus 122 ~~~~~~--------~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~----------~gad~VmiGR~~l~nP 174 (287)
|+..|+ ...++++.-+|-+++.|||.+++++...|.- .-.||+.+|+++|.--
T Consensus 190 GHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 190 GHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred CccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence 234443 2356777778999999999999999998841 1489999999998643
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.49 Score=43.79 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC----------
Q 023070 18 NDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---------- 85 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~---------- 85 (287)
.++++..+.|. +++ .|+++|.|--|+ ....++|+++. ..++||.--+.+
T Consensus 110 ~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 110 SSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGG 170 (332)
T ss_pred CCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcC
Confidence 46777777665 444 689999986221 22345666665 458999844332
Q ss_pred ----CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 86 ----FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 86 ----g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
|.+. ...++-|+.++++|+..|.+-+.. -+..++|.+.++||+|+-|
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------APVAAAITSALQIPTIGIG 224 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 1222 245677889999999999886442 2478899999999999866
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.51 Score=40.90 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+|.=|.+.++|+....++. ++.|++.|||-+-.|. ..+.++++++... .+=+..|
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~------------------a~e~I~~l~~~~p---~~lIGAG 70 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA------------------ALEAIRALAKEFP---EALIGAG 70 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC------------------HHHHHHHHHHhCc---ccEEccc
Confidence 5689999999999999999994 5678999999986665 3566666665543 2222222
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
. .-+. +-++.+.++|++++ |++. .+-+.++... ..++|++ =|+.|+.++..+++ .|++.+=
T Consensus 71 T-VL~~-~q~~~a~~aGa~fi-VsP~-----------~~~ev~~~a~-~~~ip~~--PG~~TptEi~~Ale-~G~~~lK 131 (211)
T COG0800 71 T-VLNP-EQARQAIAAGAQFI-VSPG-----------LNPEVAKAAN-RYGIPYI--PGVATPTEIMAALE-LGASALK 131 (211)
T ss_pred c-ccCH-HHHHHHHHcCCCEE-ECCC-----------CCHHHHHHHH-hCCCccc--CCCCCHHHHHHHHH-cChhhee
Confidence 1 1122 33566779999977 4322 2335444443 3466655 58999999999998 5888763
|
|
| >COG1891 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.3 Score=37.39 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH-HHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-AKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~-a~~l 99 (287)
-.-.+|.+.++-|+|.||+. |-.. ++|-.+..++.+-++++... +.+|+.-+.--+..--+..+ +--.
T Consensus 8 in~eEA~eAieGGAdIiDVK------NP~E----GSLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGa 76 (235)
T COG1891 8 INREEAIEAIEGGADIIDVK------NPAE----GSLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGA 76 (235)
T ss_pred CCHHHHHHHhhCCCceEecc------Cccc----CcccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHh
Confidence 34456666777899999985 1122 34455666655544544322 35666654321211122222 3334
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecC-------CCCHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGN-------VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGg-------I~s~~da~~~l~~~gad~VmiG 167 (287)
.-+|+|+|-|.-.... .+ ...++.++.+.+++ +..|++.|- --+|-++-+.-.+.|||-+|+-
T Consensus 77 av~GaDYiKVGLYg~k---n~--~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvD 151 (235)
T COG1891 77 AVAGADYIKVGLYGTK---NE--EEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVD 151 (235)
T ss_pred HhhCCceEEEeecccc---cH--HHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEe
Confidence 5689999988421110 11 12345555554443 356777772 2345555666667899999999
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 216 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (287)
++.-....+|.-.+ .+.+.+|.+.+.+|+.
T Consensus 152 TaiKDGkslFdfm~-------------------~e~l~eFvd~Ah~hGL 181 (235)
T COG1891 152 TAIKDGKSLFDFMD-------------------EEELEEFVDLAHEHGL 181 (235)
T ss_pred cccccchhHHhhhc-------------------HHHHHHHHHHHHHcch
Confidence 98877777775322 3457788888777763
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.62 Score=41.48 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=78.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F---P 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g---~ 87 (287)
+-++..++++...| .+.|+|-|||+-.-. .| .+.-.+..+ +.+++.+++||.+=||+ | .
T Consensus 4 lEvcv~s~~~a~~A---~~~GAdRiELc~~L~--------~G-GlTPS~g~i----~~~~~~~~ipv~vMIRPR~gdF~Y 67 (248)
T PRK11572 4 LEICCYSMECALTA---QQAGADRIELCAAPK--------EG-GLTPSLGVL----KSVRERVTIPVHPIIRPRGGDFCY 67 (248)
T ss_pred EEEEECCHHHHHHH---HHcCCCEEEEccCcC--------CC-CcCCCHHHH----HHHHHhcCCCeEEEEecCCCCCCC
Confidence 44555666554333 456999999973211 11 122333344 44445567888877776 3 2
Q ss_pred Chh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecC---CCCHHHHHHHHHhcC
Q 023070 88 NLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg---I~s~~da~~~l~~~g 160 (287)
+.. ...+-++.+.+.|++.|.+-.=+.+. ..|.+.++++.+.. ++|+...=- +.++..+.+.+...|
T Consensus 68 s~~E~~~M~~di~~~~~~GadGvV~G~L~~dg------~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 68 SDGEFAAMLEDIATVRELGFPGLVTGVLDVDG------HVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC------CcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 222 23455677889999999886544432 47777777776654 466665432 345666666555568
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
++.|.-
T Consensus 142 ~~rILT 147 (248)
T PRK11572 142 VARILT 147 (248)
T ss_pred CCEEEC
Confidence 877753
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.4 Score=38.71 Aligned_cols=135 Identities=12% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEec--c--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~--g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
..++.++|...|+..+.+-.+.++ .|+|.+-+-. | +|+ .-+--.+++.+++ +.|+.|-
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---------------FTVGAIAIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------cccCHHHHHHhCC--CCCEEEE
Confidence 457889999999999999988775 4888755542 2 332 2222345566653 5677666
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+-. .+..++++.+.++|++.|++|.-... .-...+..+++.- +.-|..|=+ +..+++..++..
T Consensus 75 LMv----~~P~~~i~~~~~aGad~It~H~Ea~~--------~~~~~l~~Ik~~g~~~kaGlalnP~-Tp~~~i~~~l~~- 140 (228)
T PRK08091 75 LMV----RDQFEVAKACVAAGADIVTLQVEQTH--------DLALTIEWLAKQKTTVLIGLCLCPE-TPISLLEPYLDQ- 140 (228)
T ss_pred ecc----CCHHHHHHHHHHhCCCEEEEcccCcc--------cHHHHHHHHHHCCCCceEEEEECCC-CCHHHHHHHHhh-
Confidence 533 45677889999999999999955221 1125567777652 333445444 678888888885
Q ss_pred CccEEEEehhhhhCccch
Q 023070 160 GCEGVLSAESLLENPALF 177 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf 177 (287)
+|.|++ +--||.+-
T Consensus 141 -vD~VLi---MtV~PGfg 154 (228)
T PRK08091 141 -IDLIQI---LTLDPRTG 154 (228)
T ss_pred -cCEEEE---EEECCCCC
Confidence 898877 33477754
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.15 Score=45.02 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=69.2
Q ss_pred CcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc---HH
Q 023070 51 GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD---WN 127 (287)
Q Consensus 51 ~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~---~~ 127 (287)
-..|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|..............+ ++
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~~-gIrvSLFiDP--~----~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~ 172 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKDA-GIRVSLFIDP--D----PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLE 172 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHHT-T-EEEEEE-S-------HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHH
T ss_pred CCcCChhhcCHHHHHHHHHHHHhC-CCEEEEEeCC--C----HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHH
Confidence 334667778889999999999874 7777766422 2 344566679999999999554322111000011 12
Q ss_pred HHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 128 AIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 128 ~i~~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+.. .....++-|-+..|+ +++.+..+.+.-+..-|.||.+++.+-
T Consensus 173 ~l~~aa~~a~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 173 RLRDAARYAHELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHHHHHHHHHHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHH
Confidence 2222 223457878888888 467777777767899999999988654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.21 Score=43.46 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=64.7
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~---ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.+.+++..+++.+.+.|+..+-|+-|+. ..++.|+++++..+ --+++.|-|.|+++++++++ .|++.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~-aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL-AGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH-cCCCE
Confidence 4678899999999999999999987653 33578888887653 13799999999999999998 59999
Q ss_pred EEEehhhhhCccchhchh
Q 023070 164 VLSAESLLENPALFAGFR 181 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~ 181 (287)
++. =-.||.+.+..+
T Consensus 92 ivs---P~~~~~v~~~~~ 106 (213)
T PRK06552 92 IVS---PSFNRETAKICN 106 (213)
T ss_pred EEC---CCCCHHHHHHHH
Confidence 982 345777666443
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.036 Score=46.75 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.....-.+.+++...|++-+-+.. --..++++++.+++|||+.|=|++.+|+.++|+ .||++|.-+..
T Consensus 104 ~al~~~~~~i~~~~PD~vEilPg~-----------~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~-aGa~aVSTS~~ 171 (175)
T PF04309_consen 104 SALETGIKQIEQSKPDAVEILPGV-----------MPKVIKKIREETNIPIIAGGLIRTKEDVEEALK-AGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESCC-----------HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCC-TTCEEEEE--H
T ss_pred HHHHHHHHHHhhcCCCEEEEchHH-----------HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHH-cCCEEEEcCCh
Confidence 333444667778899999886431 125677888888999999999999999999999 59999988754
Q ss_pred h
Q 023070 170 L 170 (287)
Q Consensus 170 ~ 170 (287)
-
T Consensus 172 ~ 172 (175)
T PF04309_consen 172 E 172 (175)
T ss_dssp H
T ss_pred H
Confidence 3
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.16 Score=46.45 Aligned_cols=87 Identities=14% Similarity=0.254 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
+.+...++++.+.+.|++.|.+.|.|.+.... +..-..+.++.+.+.+ ++||++.=+-.+.+++.+.. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~L-s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSL-TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccC-CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 45567788899999999999999887764321 1112234455555544 58998766656666665443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999999887774
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.59 Score=43.70 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-cCCcEEEEecCC------CChhhHHHHHHHHHHcCCCEEEEe--cc-CCCCcCCCCccccHHHHHHHH
Q 023070 64 VKSLVEKLALN-LNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVH--GR-TRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 64 ~~~iv~~v~~~-~~~pv~vKiR~g------~~~~~~~~~a~~l~~~G~~~I~vh--~r-t~~~~~~~~~~~~~~~i~~i~ 133 (287)
+...++.+++. .++||.+-+.-. ...++..+.++.+.+ ++|+|.+- .- +........+..-.+.++.++
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 34444444433 578888887431 123455555555544 49999773 11 111111100011235677788
Q ss_pred hhCC-----CcEEE--ecCCC--CHHHHHHHHHhcCccEEEEehhh
Q 023070 134 NALR-----IPVLA--NGNVR--HMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~-----ipVi~--nGgI~--s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+.++ +||++ +-++. +..++.+.+++.|+|+|.+--..
T Consensus 203 ~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 7776 89873 44444 24455566666899999775443
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.15 Score=49.97 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+.++.+.++|++.|++..-... . ..-++.++.+++.. ++||++ |+|.|.+++..+.+ .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~---~---~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~-aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGH---S---EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIE-AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCc---c---hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHH-cCCCEEEEC
Confidence 4578899999999998877422110 0 12357788888876 899888 99999999999998 699999875
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.33 Score=44.01 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCCCcE
Q 023070 63 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPV 140 (287)
Q Consensus 63 ~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipV 140 (287)
-+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|.+|.-+.++ --+.++.+++ ..++.|
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~--------l~~~v~~l~~~~~~~~l 238 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ--------LHHLHERLKFFDHIPTL 238 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHhccCCCEEE
Confidence 3566777777653 355665543 3444566678999999999443221 1133444432 246789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.++||| +++.+.++.+ +|+|.+++|-...+.|
T Consensus 239 easGGI-~~~ni~~ya~-~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 239 AAAGGI-NPENIADYIE-AGIDLFITSAPYYAAP 270 (277)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCcceecCc
Confidence 999999 5789988887 7999999986544444
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.36 Score=44.01 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=55.9
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++++++... .+|.|-. +..+-++.+.++|+|.|-+..-+. +.++++.+.+ ++.+
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv-------~tleea~~a~~agaDiImLDnmsp------------e~l~~av~~~~~~~~l 244 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEV-------ESLAAAEEAAAAGADIIMLDNMSL------------EQIEQAITLIAGRSRI 244 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEEC-------CCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhcCceEE
Confidence 344555554432 3444443 223445566689999998863332 3333333322 5789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.. +|+|.+.+|.-...-|+
T Consensus 245 eaSGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 277 (290)
T PRK06559 245 ECSGNI-DMTTISRFRG-LAIDYVSSGSLTHSAKS 277 (290)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCccccCCcc
Confidence 999999 5788888877 79999999975443343
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.91 Score=41.48 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--cCCC--CccccH----HHHHHH
Q 023070 62 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDGK--KFRADW----NAIKAV 132 (287)
Q Consensus 62 ~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--~~~~--~~~~~~----~~i~~i 132 (287)
+...+-+..+.+.. +.|+.+-+--..+.++..+.++.+++.|+++|.+--.-... .... ....+. +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 33333344444443 57887766433477888999999999999999883111111 0000 001222 445666
Q ss_pred HhhCCCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++||++= -++.+..++.+.+.+.|+|+|.+.
T Consensus 164 ~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 164 REAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred HHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 77778898753 344555566666666899999764
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.48 Score=42.02 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=72.6
Q ss_pred HHHHc-CCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC--hhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~--~~~~~~~a~~l~~~ 102 (287)
|++++ .||++|=+-=.+ -...-..|. .+ -..+.+.+.++.|...+++||++.+..|.. ..+..+.++.++++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~---~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a 97 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDG---GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA 97 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SS---S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCC---CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence 56554 499998765111 111111121 12 245556788888888889999999999753 66888999999999
Q ss_pred CCCEEEEeccCCCCcCCCCccccH-HH---HHHHHhh---CCCcEEEecCCCC--HHHHHHHHH------hcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADW-NA---IKAVKNA---LRIPVLANGNVRH--MEDVQKCLE------ETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~-~~---i~~i~~~---~~ipVi~nGgI~s--~~da~~~l~------~~gad~Vmi 166 (287)
|+.+|.+-.. +....... -.+. +. |+.+++. .++-|++=-+... .+...+.++ +.|||+|++
T Consensus 98 G~agi~IEDq-~~~~~~~~-l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 98 GAAGINIEDQ-RCGHGGKQ-LVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp T-SEEEEESB-STTTSTT--B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCcEEEeecc-ccCCCCCc-eeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999999654 11111111 1121 23 3333332 3455555555432 333333332 359999987
|
... |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.7 Score=41.51 Aligned_cols=94 Identities=26% Similarity=0.315 Sum_probs=62.2
Q ss_pred CHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE-------EEecC----
Q 023070 19 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-------CKIRV---- 85 (287)
Q Consensus 19 ~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~-------vKiR~---- 85 (287)
++++..+.| ++++ .|+++|.|-- + ..+.+.++.+.+ .++||. ...|.
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEg-------------g------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy 149 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEG-------------G------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY 149 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcC-------------c------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence 476666655 4566 6899999862 1 223455555543 367877 32222
Q ss_pred ---CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 86 ---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 86 ---g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
|.+. +.+++-++.++++|++.|.+-+. + -+..+++.+.+++|+|+-|
T Consensus 150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v----------p--~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECV----------P--VELAAKITEALAIPVIGIG 202 (263)
T ss_pred eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------c--HHHHHHHHHhCCCCEEeec
Confidence 2232 25677788899999999988543 2 2678899999999999766
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.16 Score=45.36 Aligned_cols=91 Identities=7% Similarity=0.017 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEE---eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~v---h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+.+...+.|+.+.++|+..+-= .+||......+.|..-+..+.++++..++|++. .+.+++++..+.+ .+|.+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vdil 102 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLDVI 102 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCCEE
Confidence 5567789999999999987733 356654333333334567788888889999988 7999999987766 59999
Q ss_pred EEehhhhhCccchhchhh
Q 023070 165 LSAESLLENPALFAGFRT 182 (287)
Q Consensus 165 miGR~~l~nP~lf~~~~~ 182 (287)
.||...+.|..|...+..
T Consensus 103 qIgs~~~~n~~LL~~va~ 120 (250)
T PRK13397 103 QVGARNMQNFEFLKTLSH 120 (250)
T ss_pred EECcccccCHHHHHHHHc
Confidence 999999999999887653
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.6 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..||..+....-....|++..||| +++.+.+++...+..||=+.+|.=..|.
T Consensus 185 t~DW~~l~~~~~~~~~p~iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG 236 (256)
T PLN02363 185 GFNWQNFKLPSVRSRNGWLLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDG 236 (256)
T ss_pred ccCHHHhcccccccCCCEEEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCC
Confidence 357876541110124689999999 5799999988778888888877755554
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=44.39 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
+|-+.+++|+|.||||.++-.+.. -........+.+..+++.+++ ..++||++...- .+.++...++|
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-------~~v~~~aL~~g 92 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-------PEVAEAALKAG 92 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-------HHHHHHHHHcC
Confidence 344477899999999987643321 111223456678888888876 568999998532 23344444447
Q ss_pred CCEE
Q 023070 104 CSLL 107 (287)
Q Consensus 104 ~~~I 107 (287)
++.|
T Consensus 93 ~~~i 96 (210)
T PF00809_consen 93 ADII 96 (210)
T ss_dssp SSEE
T ss_pred cceE
Confidence 7755
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.4 Score=41.72 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHH-HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAAR-RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 76 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~-~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-- 76 (287)
-.++|++.-++ |-|++.+++.+. .+..|+|+|-.. +|-+. -..+.++.+.+.+.++.+.+.++
T Consensus 127 v~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~ 198 (367)
T cd08205 127 VHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRK 198 (367)
T ss_pred CCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 35788887765 457999999888 456689998553 22111 01123455666677777665554
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe----cC-------
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GN------- 145 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n----Gg------- 145 (287)
.++..-+ ..+.++.++.++.++++|++++-|..-.. -+..+..+++..++||.+- |-
T Consensus 199 ~~y~~ni--t~~~~e~i~~a~~a~~~Gad~vmv~~~~~----------g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 199 TLYAPNI--TGDPDELRRRADRAVEAGANALLINPNLV----------GLDALRALAEDPDLPIMAHPAFAGALSRSPDY 266 (367)
T ss_pred ceEEEEc--CCCHHHHHHHHHHHHHcCCCEEEEecccc----------cccHHHHHHhcCCCeEEEccCcccccccCCCC
Confidence 3333333 23348889999999999999997763321 1122344444456666531 11
Q ss_pred CCCHHHHHHHHHhcCccEEEEe
Q 023070 146 VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiG 167 (287)
+.+.--..++.+..|+|.+..+
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~ 288 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFP 288 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccC
Confidence 3344455566666788888765
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.66 Score=40.21 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc
Q 023070 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 112 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r 112 (287)
++++.+++.. .++.+.+.++.-.......++.+.+.|+|++|||+.
T Consensus 40 ~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 40 KIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5666666543 345444434332233345566678899999999963
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.39 Score=43.08 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=50.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+.+...+-|. .+++|+|.||||+-+..+... +-.-....+.+..+++.+++.+++||++...- .+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~-------~~v~e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTFR-------AEVAR 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-------HHHHH
Confidence 5555555554 678899999999643322110 11112345567778888888778999987321 24456
Q ss_pred HHHHcCCCEE-EEec
Q 023070 98 MLEDAGCSLL-AVHG 111 (287)
Q Consensus 98 ~l~~~G~~~I-~vh~ 111 (287)
...+.|++.| .|.+
T Consensus 91 ~al~~G~~iINdisg 105 (257)
T cd00739 91 AALEAGADIINDVSG 105 (257)
T ss_pred HHHHhCCCEEEeCCC
Confidence 6666788877 3443
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.52 Score=43.09 Aligned_cols=150 Identities=9% Similarity=0.087 Sum_probs=82.8
Q ss_pred HHHHc-CCCCEEEEe-ccCChh-hhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDIN-LGCPQR-IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP~~-~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~ 102 (287)
|++++ .||+++=+- .+.-.. .-..|. | +-..+...+.++.|...+++||++.+-.|.. ..+....++.++++
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~-g---~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDL-G---FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCc-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 55554 599998663 111111 111121 1 2234556777788888889999999988753 34567789999999
Q ss_pred CCCEEEEeccCCCCcCC-CCcc--cc-HHHHHHH---HhhC-CCcEEEec--CC---CCHHHHHHHH---HhcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDG-KKFR--AD-WNAIKAV---KNAL-RIPVLANG--NV---RHMEDVQKCL---EETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~-~~~~--~~-~~~i~~i---~~~~-~ipVi~nG--gI---~s~~da~~~l---~~~gad~Vmi 166 (287)
|+.+|++-.-+...+-+ ..+. .+ -+.+.+| ++.. +.+++.|. +. ...+++.+-. .+.|||+|++
T Consensus 105 Gaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi 184 (294)
T TIGR02319 105 GIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFL 184 (294)
T ss_pred CCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999996443210000 0011 11 1333443 3332 23344443 22 2244443222 2369999999
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
- .+.++...+++..
T Consensus 185 ~--~~~~~~ei~~~~~ 198 (294)
T TIGR02319 185 E--AMLDVEEMKRVRD 198 (294)
T ss_pred c--CCCCHHHHHHHHH
Confidence 4 3567776665543
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=38.04 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=75.8
Q ss_pred EEEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChh
Q 023070 12 FVQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 90 (287)
Q Consensus 12 ~~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~ 90 (287)
.++|||- ++++...|+ +.|+|.|=+.|-.+.+. .=+++.+.+|.+.+...+ .+|.|=. ..
T Consensus 4 ~vKICGi~~~eda~~~~---~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~-----~~ 64 (210)
T PRK01222 4 RVKICGITTPEDAEAAA---ELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFV-----NA 64 (210)
T ss_pred eEEECCCCcHHHHHHHH---HcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEe-----CC
Confidence 4899995 566544433 46888888875422211 124667777777654222 2333331 13
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~-~gad~VmiGR 168 (287)
+..++.+.+++.+.+.|.+||- .+.+.++.+++..+++|+-.=.+.+..++....+. ..||.+++-.
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~-----------e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGD-----------ETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCC-----------CCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence 4445666777999999999963 22356777777667777755556555555443332 2578877753
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.52 Score=42.80 Aligned_cols=86 Identities=9% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++++++... .+|.|-++ + .+-+..+.++|+|.|-+..-+. +.++++.+.. ..|+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~------------e~l~~av~~~~~~~~l 241 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP------------DTLREAVAIVAGRAIT 241 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH------------HHHHHHHHHhCCCceE
Confidence 344555555442 44554432 2 2334455689999998763322 3344433332 5789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
.++||| +++.+.++-+ +|+|.+.+|.-..
T Consensus 242 eaSGGI-~~~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 242 EASGRI-TPETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeChhhc
Confidence 999999 5788888877 7999999997444
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.21 Score=45.82 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=61.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH---HHhcCc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 161 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~---l~~~ga 161 (287)
.|.+...++++.+.+.|+++|.+-|-|.+.... +..-..+.++.+++.+ ++|||+.-|=.+.+++.+. .+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~L-s~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTL-TLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhc-CHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 355677889999999999999998887764321 1112234556666665 5898875554445555433 344799
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|++|+-...|..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999999998887
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.17 Score=46.00 Aligned_cols=42 Identities=29% Similarity=0.656 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+-++.+++.++.||+.-| |-+.+|+..+.+ .|++|+++.
T Consensus 210 l~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave-~G~~GIIVS 251 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVVKG-VLTGEDARKAVE-AGVAGIIVS 251 (363)
T ss_pred CChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHH-hCCceEEEe
Confidence 479999999999999999865 778899999999 599999884
|
|
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.9 Score=37.30 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=85.1
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
.+++-|.|.+++++.+.++.+ ..++|.||+=+- -+.. ..+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---------~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---------FLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec---------hhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 367999999999998887754 468999999642 2211 124466677777777655 689998888722
Q ss_pred -------ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHHHHH
Q 023070 88 -------NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKC 155 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da~~~ 155 (287)
+.++..++.+.+.+.| +++|.|--... ......+....+..++.||++=- --+.+++.+.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~--------~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~ 157 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG--------KDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVER 157 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC--------hHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHH
Confidence 3345567778888889 89999852211 11122222222234567777642 2233454433
Q ss_pred H---HhcCccEEEEeh
Q 023070 156 L---EETGCEGVLSAE 168 (287)
Q Consensus 156 l---~~~gad~VmiGR 168 (287)
+ ...|||.|=+..
T Consensus 158 ~~~~~~~gaDivKia~ 173 (253)
T PRK02412 158 LRKMESLGADIVKIAV 173 (253)
T ss_pred HHHHHHhCCCEEEEEe
Confidence 3 335777665543
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.63 Score=40.82 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+.+.+++.++++.+.+.|+..|-|+-|+.. ..+.|+.+++. .+--+++.|-|.|+++++.+++ .|+
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~-aGA 92 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQ-LGA 92 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHH-cCC
Confidence 356789999999999999999999977642 34566666532 2223799999999999999998 599
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
+.++.= -.||.+.+..+
T Consensus 93 ~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 93 NFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred CEEECC---CCCHHHHHHHH
Confidence 998752 35888777554
|
|
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.63 Score=43.03 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=61.5
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEe
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 110 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh 110 (287)
+.|+|.|+||+-..-+... ...++.+.++++.|.+.+++|+.+-..... ..++.-+-..++.++=....+.
T Consensus 87 ~~GAd~Idl~~~s~dp~~~--------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~-~kD~evleaale~~~g~~pLIn 157 (319)
T PRK04452 87 EYGADMITLHLISTDPNGK--------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNP-EKDAEVLEKVAEAAEGERCLLG 157 (319)
T ss_pred HhCCCEEEEECCCCCcccc--------cchHHHHHHHHHHHHHhCCCCEEEecCCCC-CCCHHHHHHHHHHhCCCCCEEE
Confidence 4589999999632211100 123566788999998889999986632211 1133222233333332222333
Q ss_pred ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHHhcCc
Q 023070 111 GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGC 161 (287)
Q Consensus 111 ~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG--gI~s~~da~~~l~~~ga 161 (287)
+-+. .+|+.+..+....+.||++.. +|.-..++...+.+.|.
T Consensus 158 Sat~---------en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi 201 (319)
T PRK04452 158 SAEE---------DNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGV 201 (319)
T ss_pred ECCH---------HHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCC
Confidence 2221 257777777777788888775 33333333344444555
|
|
| >PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.49 Score=42.75 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=73.2
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC-CEEEE-eccCCCCcCCCCccccHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAV-HGRTRDEKDGKKFRADWNAI 129 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~-~~I~v-h~rt~~~~~~~~~~~~~~~i 129 (287)
.-|+.++.++.++..+ ..++.||.+|-....+.++....++.+...|+ +.+.+ |-..+..........|+..+
T Consensus 112 qIgAr~~~n~~ll~~a-----s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 112 QIGARLMENQDLLEAA-----SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp EE-GGGTTCHHHHHHH-----HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred EECcchhcCHHHHHHh-----ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 3466677776654333 25689999998888778888889999999995 66644 32222211111113577778
Q ss_pred HHHHhhCCCcEEEec----CCCC-------HHHHHHHHHhcCccEEEEeh
Q 023070 130 KAVKNALRIPVLANG----NVRH-------MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 130 ~~i~~~~~ipVi~nG----gI~s-------~~da~~~l~~~gad~VmiGR 168 (287)
..+++..++||+..- +-.+ +..+...+. .|+||+|+=.
T Consensus 187 ~~~~~~~~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia-~GidGlmiEs 235 (270)
T PF00793_consen 187 PIMKKKTHLPVIVDPSHANSRKDGGRQELVPPLARAAIA-AGIDGLMIES 235 (270)
T ss_dssp HHHHHHTSSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHH-HTESEEEEEE
T ss_pred HHHHHhcCCCEEECchhhhccccCCchhhHHHHHHHHHh-hcCCEEEEee
Confidence 888888789999653 2333 556677777 5899999964
|
Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A .... |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.6 Score=39.34 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=75.4
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEecCC---CChhhHHHHHH-HHH
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYAK-MLE 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKiR~g---~~~~~~~~~a~-~l~ 100 (287)
|++++ .|+|.|= .|.......- +|-....-..+.+...+++|++.++.| |++.+..| .+.++.++.+. .++
T Consensus 28 Arl~e~aG~d~i~--vGds~~~~~l-G~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 28 AKLFDEAGVDVIL--VGDSLGMVVL-GYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHc-CCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 55554 5999995 3544443332 233444456777788888888888775 88887533 23345455444 455
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
++|+++|.+-+. ....+.|+.+++ .+|||+ ..||. ++.+.+.+++ ++.
T Consensus 105 ~aGa~aVkiEdg----------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eA 173 (264)
T PRK00311 105 EAGAHAVKLEGG----------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEA 173 (264)
T ss_pred HhCCeEEEEcCc----------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHC
Confidence 599999998653 112245666654 389987 44543 3434343333 346
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
|||++.+
T Consensus 174 GA~~i~l 180 (264)
T PRK00311 174 GAFALVL 180 (264)
T ss_pred CCCEEEE
Confidence 9999877
|
|
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.23 Score=43.09 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.+++.+.|+..|-|..|.-.. ...|+....++.+.+ ++-+++-.||+|++|+...-+ .|+.+|.+|..++..
T Consensus 199 m~raleiGakvvGvNNRnL~s-----FeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~-~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 199 MQRALEIGAKVVGVNNRNLHS-----FEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK-AGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHhCcEEEeecCCccce-----eeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH-cCceEEEecHHHHhc
Confidence 444555688888887776542 257788778887765 456777789999999998877 599999999999853
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.27 Score=44.73 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=58.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+-|-|.+..... .....+.++.+.+.+ ++|||++-+- +.+++.+.. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls-~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLT-PDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCC-HHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455667788999999999999988877643221 111224455555554 5999987665 666665544 447999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
++|+--+.+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999988887665
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.46 Score=40.44 Aligned_cols=72 Identities=15% Similarity=0.351 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|++.|.+.-++. ...+.++.+++....-.++.|-+.+.+++..+++ .|||+|++
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~-~gAdgv~~ 90 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGTILTLEDLEEAIA-AGAQFCFT 90 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH-cCCCEEEC
Confidence 4668889999999999999999975543 2236667776655555578889999999999998 59999988
Q ss_pred eh
Q 023070 167 AE 168 (287)
Q Consensus 167 GR 168 (287)
+-
T Consensus 91 p~ 92 (187)
T PRK07455 91 PH 92 (187)
T ss_pred CC
Confidence 74
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.1 Score=40.23 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=64.7
Q ss_pred CHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----------
Q 023070 19 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----------- 85 (287)
Q Consensus 19 ~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----------- 85 (287)
++++..+.| ++++ .|+|+|-|- |+. ...++++++.+. ++||.--+.+
T Consensus 92 s~e~av~nA~rl~ke~GadaVKlE-------------Gg~------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGy 151 (261)
T PF02548_consen 92 SPEQAVRNAGRLMKEAGADAVKLE-------------GGA------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGY 151 (261)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEE-------------BSG------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEec-------------cch------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCc
Confidence 555555544 5666 689999986 221 234455555433 8999877754
Q ss_pred ---CCChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ---FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ---g~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|-+.+ ..++.|+.++++|+-.|.+-.. + -+.-+.+.+.++||+|+-|.= .
T Consensus 152 r~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p--~~la~~It~~l~IPtIGIGaG------------~ 207 (261)
T PF02548_consen 152 RVQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------P--AELAKAITEALSIPTIGIGAG------------P 207 (261)
T ss_dssp --CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------B--HHHHHHHHHHSSS-EEEESS-------------S
T ss_pred eEEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------H--HHHHHHHHHhCCCCEEecCCC------------C
Confidence 22323 4467788999999999988643 2 256678899999999977642 3
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
+|||-++
T Consensus 208 ~cDGQvL 214 (261)
T PF02548_consen 208 GCDGQVL 214 (261)
T ss_dssp TSSEEEE
T ss_pred CCCceEE
Confidence 6898654
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.9 Score=37.32 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC---Chhh
Q 023070 18 NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQD 91 (287)
Q Consensus 18 ~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~---~~~~ 91 (287)
.+++.+...|+.++ .|+-+|.+| | .+=+++++..+++||. +|-..-. ...-
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-------------g----------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp 86 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-------------G----------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITP 86 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-------------c----------hhhHHHHHhhCCCCeEEEEecCCCCCCceecc
Confidence 46678888887654 578999998 1 2335678888999986 5532211 1123
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH-HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~-~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+++-++.|.++|++.|.+.+..+.. .. . +++ .+++ .+..+ ..+--|+.|+++...+.+ .|+|.|.
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~R---P~-~-~~~~~i~~-~k~~~--~l~MAD~St~ee~l~a~~-~G~D~IG 152 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPR---PD-G-DLEELIAR-IKYPG--QLAMADCSTFEEGLNAHK-LGFDIIG 152 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCC---Cc-c-hHHHHHHH-hhcCC--cEEEeccCCHHHHHHHHH-cCCcEEe
Confidence 4566778889999999887655431 11 1 332 3333 22333 566679999999999998 5999863
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.2 Score=41.18 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=81.7
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE-EecCC---CChhhHHHHHHHH-H
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIRVF---PNLQDTIKYAKML-E 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v-KiR~g---~~~~~~~~~a~~l-~ 100 (287)
|++++ .|+|.|=+ |....++.-| |-+.+--..+.+...+++|++....|++| .+-.+ .+.+++++-+.++ .
T Consensus 48 A~i~d~aGvD~ILV--GDSlgmv~lG-~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 48 AVHVDSAGIDVCLV--GDSAAMVVHG-HDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHcCCCEEEE--CCcHHHHhcC-CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 44443 47777655 3333333322 44445556777888888999888889887 77766 3567788878877 6
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
+.|+++|-+-|... ...+.|+.+. ..+|||+ .-||. ++.+.+.+++ ++.
T Consensus 125 eaGa~aVKlEGg~~---------~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~A 194 (332)
T PLN02424 125 EGGMDAVKLEGGSP---------SRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEA 194 (332)
T ss_pred HhCCcEEEECCCcH---------HHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHc
Confidence 79999998875531 1236677777 4589999 33552 3444443333 446
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
||+++.+
T Consensus 195 GAf~ivL 201 (332)
T PLN02424 195 GCFAVVL 201 (332)
T ss_pred CCcEEEE
Confidence 9998875
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.86 Score=41.38 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++.+++... .+|.|-++ ..+-++.+.++|+|.|-+..-+. +.++++.+.+ ...+
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~-------slee~~ea~~~gaDiImLDn~s~------------e~l~~av~~~~~~~~l 240 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVD-------RLDQIEPVLAAGVDTIMLDNFSL------------DDLREGVELVDGRAIV 240 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHhcCCCEEEECCCCH------------HHHHHHHHHhCCCeEE
Confidence 344445554432 44555432 23334555689999998863322 2333333322 3578
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.. +|+|.+.+|.-...=|+
T Consensus 241 eaSGgI-~~~ni~~yA~-tGVD~Is~galths~~~ 273 (281)
T PRK06543 241 EASGNV-NLNTVGAIAS-TGVDVISVGALTHSVRA 273 (281)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCccccCCcc
Confidence 999999 5788888877 79999999975544444
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.66 Score=42.35 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+..-+. +.+++..+.+ ++.+.
T Consensus 193 ~~av~~~r~~~~~~kIeVEve-------tleea~eA~~aGaDiImLDnmsp------------e~l~~av~~~~~~~~lE 253 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVE-------TLAQLETALAHGAQSVLLDNFTL------------DMMREAVRVTAGRAVLE 253 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcC-------CHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHhhcCCeEEE
Confidence 35555555432 234444432 24445556689999998864432 2333333322 57799
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
++||| +++.+.++-+ +|+|.+.+|.-...-||+
T Consensus 254 aSGGI-t~~ni~~yA~-tGVD~IS~galthsa~~l 286 (294)
T PRK06978 254 VSGGV-NFDTVRAFAE-TGVDRISIGALTKDVRAT 286 (294)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCccc
Confidence 99999 5788888877 799999999766555553
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=93.94 E-value=1 Score=41.15 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=84.5
Q ss_pred HHHHc-CCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~G 103 (287)
|++++ .||++|-+-=.+ -...-..| | .+ -..+.+.+.++.|...+++||++.+-.|.. ..+..+.++.++++|
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD--~-g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aG 103 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPD--A-NI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAG 103 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCC--c-cc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcC
Confidence 55554 499988775110 00000112 1 12 245667788888888899999999988753 235677799999999
Q ss_pred CCEEEEeccCCCCcCCC--Cc---cccH-HHHHHH---Hhh-CCCcEEEecCCC------CHHHHHHH---HHhcCccEE
Q 023070 104 CSLLAVHGRTRDEKDGK--KF---RADW-NAIKAV---KNA-LRIPVLANGNVR------HMEDVQKC---LEETGCEGV 164 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~--~~---~~~~-~~i~~i---~~~-~~ipVi~nGgI~------s~~da~~~---l~~~gad~V 164 (287)
+.+|.+-......+.+. .+ -.+. +.+.+| ++. .+.+++.|.... ..+++.+- ..+.|||+|
T Consensus 104 vagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~i 183 (290)
T TIGR02321 104 ASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAI 183 (290)
T ss_pred CeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 99999954332111000 01 1122 233343 332 233444444322 23444322 223699999
Q ss_pred EEehhhhhCccchhchhh
Q 023070 165 LSAESLLENPALFAGFRT 182 (287)
Q Consensus 165 miGR~~l~nP~lf~~~~~ 182 (287)
++- +.+.+|..+.++..
T Consensus 184 fv~-~~~~~~~ei~~~~~ 200 (290)
T TIGR02321 184 LIH-SRQKTPDEILAFVK 200 (290)
T ss_pred Eec-CCCCCHHHHHHHHH
Confidence 993 34567776666543
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.75 Score=41.96 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHh-hCCCcEEE
Q 023070 66 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKN-ALRIPVLA 142 (287)
Q Consensus 66 ~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~-~~~ipVi~ 142 (287)
+.++.+++.. ..++.|=++ + .+-+..+.++|+|.|-+..-+.+ ++ +.+..+++ ..++.+.+
T Consensus 188 ~ai~~~r~~~~~~kIeVEv~---t----l~ea~eal~~gaDiI~LDnm~~e---------~vk~av~~~~~~~~~v~iea 251 (289)
T PRK07896 188 AALRAVRAAAPDLPCEVEVD---S----LEQLDEVLAEGAELVLLDNFPVW---------QTQEAVQRRDARAPTVLLES 251 (289)
T ss_pred HHHHHHHHhCCCCCEEEEcC---C----HHHHHHHHHcCCCEEEeCCCCHH---------HHHHHHHHHhccCCCEEEEE
Confidence 4445555433 345555542 2 23344456899999988633211 11 11222222 23578999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 252 SGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 252 SGGL-TLDTAAAYAE-TGVDYLAVGALTHSVPV 282 (289)
T ss_pred ECCC-CHHHHHHHHh-cCCCEEEeChhhcCCCc
Confidence 9999 5788888777 79999999975553444
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=43.96 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+.|.+.+.... +..-..+.++.+.+.+ ++||++.=|=.+.+++.+.. +..|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~l-s~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhC-CHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 55566788899999999999998887664321 1111223444445543 48988665544556665543 347999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+.-+.+..|.
T Consensus 99 av~~~~P~y~~~~ 111 (280)
T PLN02417 99 AALHINPYYGKTS 111 (280)
T ss_pred EEEEcCCccCCCC
Confidence 9999988777763
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.31 Score=44.65 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|+++|.+-|-+.+..... ..-..+.++.+.+.+ ++|||+.-|- +.+++.+.. +..|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt-~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLT-PDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCC-HHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 555677889999999999999988776643221 111234455555554 5999876554 566665444 446999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+.-+.+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999988776655
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=93.84 E-value=2.5 Score=40.51 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|...+.+.+++..+.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 208 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRF------------EERVEKLYKVRDKVEAE 208 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccH------------HHHHHHHHHHHHHHHHH
Confidence 45789987764 67899999999854 456777643 23 3444 24455566666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hCCCcEEE---------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA--------- 142 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~--------- 142 (287)
++.....=.++.-+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++ ..++||.+
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVMVDVVV----------CGWSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeec----------cchHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 665554444444456777888888899999988775332 22455666655 45788876
Q ss_pred ---ecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 143 ---NGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 143 ---nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+-||.. .-..++..-.|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 235654 44667777789999998865
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.35 Score=40.40 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
...-.+.+++.++|+|-|-++- --..++++.+.+++|||+.|=|++-|++.++++ .||-+|.-
T Consensus 110 l~~~~~~i~~~~pD~iEvLPGv-----------~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~-aGA~avST 172 (181)
T COG1954 110 LEKGIKQIEKSEPDFIEVLPGV-----------MPKVIKEITEKTHIPIIAGGLIETEEEVREALK-AGAVAVST 172 (181)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-----------cHHHHHHHHHhcCCCEEeccccccHHHHHHHHH-hCcEEEee
Confidence 3344556678899999886441 126789999999999999999999999999999 48877763
|
|
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.2 Score=40.51 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEe-ccCChhhhhcCcccccc--cCChHHHHHHHHHHhhccC--CcEEEEecCCC----
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDIN-LGCPQRIARRGNYGAFL--MDNLPLVKSLVEKLALNLN--VPVSCKIRVFP---- 87 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN-~gcP~~~~~~~~~G~~l--~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g~---- 87 (287)
..||.+.+.=+ .+++|+|.|+-| |||-.-+..+ ||-.- ..=-....+|-+++.+..+ .|..|-=.+|+
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lad--y~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~ 127 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLAD--YGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKT 127 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhh--hChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCc
Confidence 56788777776 688999999999 6765533332 33110 0001122344444433322 34444322221
Q ss_pred ---------ChhhH----HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCC------
Q 023070 88 ---------NLQDT----IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNV------ 146 (287)
Q Consensus 88 ---------~~~~~----~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI------ 146 (287)
++++. .+-++.+.+-|+|.|.+-.-.- . ....+-+..++++.+. .++||+++|-|
T Consensus 128 ~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D--~--l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~t 203 (311)
T COG0646 128 LSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD--T--LNAKAAVFAAREVFEELGVRLPVMISGTITDSGRT 203 (311)
T ss_pred CCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc--H--HHHHHHHHHHHHHHHhcCCcccEEEEEEEecCcee
Confidence 12222 3556678899999997742210 0 0001223334444433 35999999966
Q ss_pred ---CCHHHHHHHHHhcCccEEEE
Q 023070 147 ---RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 147 ---~s~~da~~~l~~~gad~Vmi 166 (287)
.+++++...++..|+|.|.+
T Consensus 204 l~Gq~~~a~~~~l~~~~~~~vGl 226 (311)
T COG0646 204 LSGQTIEAFLNSLEHLGPDAVGL 226 (311)
T ss_pred cCCCcHHHHHHHhhccCCcEEee
Confidence 35667777777666665544
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.71 Score=42.22 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=55.8
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++++++.. ..+|.|-++ +.+-++.+.++|+|.|-+..-+. +.++++.+.. ++.+.
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~------------e~~~~av~~~~~~~~ie 256 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT------------EQMREAVKRTNGRALLE 256 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh------------HHHHHHHHhhcCCeEEE
Confidence 34444544433 355665543 23445556689999998753322 3333333322 57899
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++-+ +|+|.+.+|.-.-.-||
T Consensus 257 aSGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 288 (296)
T PRK09016 257 VSGNV-TLETLREFAE-TGVDFISVGALTKHVQA 288 (296)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCCc
Confidence 99999 5788887776 79999999964443333
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.2 Score=38.34 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=73.1
Q ss_pred HHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE-EEecCC-C-ChhhHHHHHHHHHH-
Q 023070 27 ARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-CKIRVF-P-NLQDTIKYAKMLED- 101 (287)
Q Consensus 27 A~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~-vKiR~g-~-~~~~~~~~a~~l~~- 101 (287)
|+++ +.|+|.|=+ |.......- ||-+.+--..+.+...+++|++....|+. +.+..+ . +.++.++-+.++.+
T Consensus 28 A~i~~~aG~d~ilv--GdSlgm~~l-G~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~e 104 (263)
T TIGR00222 28 AKLFADAGVDVILV--GDSLGMVVL-GHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHcCCCEEEE--CccHhHHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHH
Confidence 5555 458998874 433333332 24444445677777888888877433322 233222 1 35666666666554
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE---------Ee--cCC----CCHHHHHHHH------HhcC
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---------AN--GNV----RHMEDVQKCL------EETG 160 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi---------~n--GgI----~s~~da~~~l------~~~g 160 (287)
+|++++.+-|. ....+.++.+.+ .++||+ ++ ||. ++.+.+.+++ ++.|
T Consensus 105 aGa~aVkiEgg----------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AG 173 (263)
T TIGR00222 105 TGANAVKLEGG----------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAG 173 (263)
T ss_pred hCCeEEEEcCc----------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcC
Confidence 99999998764 112245555543 478888 33 655 3555554444 3469
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
|+++.+
T Consensus 174 A~~ivl 179 (263)
T TIGR00222 174 AQLLVL 179 (263)
T ss_pred CCEEEE
Confidence 999876
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.1 Score=48.20 Aligned_cols=106 Identities=10% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++.+.++ .++.||..+.+..|-. .+++.-.+.++++++.+ ++.+.+..+-+|+.+++.+
T Consensus 1089 ~~~~~~~~~a~~~~~~Gf~~~KlKvG~~--------------~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1089 GSPLEVAYVARKLVEEGFSAIKLKVGRR--------------VSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 48888877666 5677999998875410 13455567788888876 4566677667899999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 149 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~ 149 (287)
+++.+++.++.+|- +. . .+++.+.++++.+++||.+.=.+.+.
T Consensus 1155 ~~~~L~~~~i~~iE-------qP----l-~~~~~l~~l~~~~~iPIA~DEs~~~~ 1197 (1655)
T PLN02980 1155 FGSLVKSCNLKYIE-------EP----V-QDEDDLIKFCEETGLPVALDETIDKF 1197 (1655)
T ss_pred HHHHHhhcCCCEEE-------CC----C-CCHHHHHHHHHhCCCCEEeCCCcCCc
Confidence 99999999888772 10 0 13344555666666666655555544
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.37 Score=44.34 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+-|-|.+..... ..-..+.++.+++.+ ++|||+.=+=.+.+++.++. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt-~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECATLT-WEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchhCC-HHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 455667888999999999999988876643211 111223445555544 59998766555556665544 346999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+--..+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999998877666
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00740 MeTr MeTr subgroup of pterin binding enzymes | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.9 Score=38.59 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...+-|+ .+++|+|.||||++ | | .....+.+.+++..+.+.+++||++... ++ +.+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~---------~--~~~~~ee~~r~v~~i~~~~~~piSIDT~------~~-~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD-Y---------G--GLDGVSAMKWLLNLLATEPTVPLMLDST------NW-EVI 83 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-C---------C--CCCHHHHHHHHHHHHHHhcCCcEEeeCC------cH-HHH
Confidence 66676666665 67889999999975 2 1 1223556677777777666899998832 12 233
Q ss_pred HHHHHc--CCCEE-EEe
Q 023070 97 KMLEDA--GCSLL-AVH 110 (287)
Q Consensus 97 ~~l~~~--G~~~I-~vh 110 (287)
+...+. |++.| .|.
T Consensus 84 e~aL~~~~G~~iINsIs 100 (252)
T cd00740 84 EAGLKCCQGKCVVNSIN 100 (252)
T ss_pred HHHHhhCCCCcEEEeCC
Confidence 444443 88866 344
|
This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.2 Score=40.96 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
.|+.+.+-++.+++..+.|+.+.+.... ....+.++.+.+.|++.|.+++.. + .+.++++++. +++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g~----------p-~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAGN----------P-GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCCC----------c-HHHHHHHHHc-CCE
Confidence 5888999999999888889888765421 122355666778999999875321 1 2477888765 777
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|++ .+.|.+.+.++.+ .|+|.|.+
T Consensus 112 v~~--~v~s~~~a~~a~~-~GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEK-AGADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 774 7889999988887 59999987
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=93.58 E-value=2.2 Score=40.77 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|.+.+.+.+++..+.
T Consensus 140 v~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 207 (406)
T cd08207 140 VEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPL------------DERVRAVMRVINDHAQR 207 (406)
T ss_pred CCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcH------------HHHHHHHHHHHHHHHHh
Confidence 45799988774 67899999998854 456676532 23 2444 24455566666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE----Eec------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL----ANG------ 144 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi----~nG------ 144 (287)
++.....=.++.-+.++..+-++.+.+.|+.++-|..-+ .-|..+..+++..++||. +.|
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p 277 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS----------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSP 277 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc----------cchHHHHHHHhcCCceEEECCCcceecccCC
Confidence 666555444554456778888888999999988775332 335667778777888887 344
Q ss_pred --CCCCHHHHHHHHHhcCccEEEEeh
Q 023070 145 --NVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 145 --gI~s~~da~~~l~~~gad~VmiGR 168 (287)
||.. .-..+++.-.|+|.+.++.
T Consensus 278 ~~Gis~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 278 ALGISF-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred CCCCcH-HHHHHHHHHcCCCccccCC
Confidence 4443 3466777778999999865
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.25 Score=42.39 Aligned_cols=142 Identities=22% Similarity=0.334 Sum_probs=79.1
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~ 91 (287)
|+|||- +++++..++ +.|+|.+=+.+- |.+ .+ .-.++.+.++++.+.. .+|.|-. ..+
T Consensus 1 vKICGi~~~~da~~~~---~~g~d~~Gfi~~-~~S--~R-------~v~~~~a~~l~~~~~~---~~VgVf~-----~~~ 59 (197)
T PF00697_consen 1 VKICGITRPEDARLAA---ELGADYLGFIFY-PKS--PR-------YVSPDQARELVSAVPP---KIVGVFV-----NQS 59 (197)
T ss_dssp EEEE---SHHHHHHHH---HHTSSEEEEE---TTC--TT-------B--HHHHHHHHCCSSS---SEEEEES-----SS-
T ss_pred CeECCCCcHHHHHHHH---HcCCCEEeeecC-CCC--CC-------ccCHHHHHHHHHhcCC---CEEEEEc-----CCC
Confidence 467774 555544443 457787777753 221 00 1245666666554431 1444442 234
Q ss_pred HHHHHHHHHHcCCCEEEEeccCC--------------------C--------------------CcCCCCc-cccHHHHH
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTR--------------------D--------------------EKDGKKF-RADWNAIK 130 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~--------------------~--------------------~~~~~~~-~~~~~~i~ 130 (287)
..++.+.+.+.+.+.|.+||-.. . ...+++| ..||+.++
T Consensus 60 ~~~I~~~~~~~~ld~vQLHG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~ 139 (197)
T PF00697_consen 60 PEEILEIVEELGLDVVQLHGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLK 139 (197)
T ss_dssp HHHHHHHHHHCTESEEEE-SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhh
Confidence 44566667788888888887320 0 0011122 46899888
Q ss_pred HHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 131 AVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 131 ~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
.+.+. .+.|++..||| +++.+.++++..+..||=+..|.=.+|..
T Consensus 140 ~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 140 KIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp CCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred hhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 88764 37999999999 57899999998899999998888666654
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.42 Score=43.54 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 88 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
+.+....+++.+.+ .|++.|.+-|.+.+.... +..-..+.++.+.+.+ ++||++.=|-.+.+++.++. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~L-s~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLL-STEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccC-CHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 45667788999999 999999998877664221 1112234455555554 48998766556667665443 44799
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+--+.+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999998887773
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.1 Score=39.53 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh---hhHHH
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL---QDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~---~~~~~ 94 (287)
.+.+.+.. +++.|+|.|-+-...-....+...+ ..+.+.+.++..++ .++.|.+.+..-... ....+
T Consensus 11 g~~e~l~a---Ai~~GADaVY~G~~~~~~R~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~ 80 (443)
T PRK15452 11 GTLKNMRY---AFAYGADAVYAGQPRYSLRVRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIR 80 (443)
T ss_pred CCHHHHHH---HHHCCCCEEEECCCccchhhhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHH
Confidence 34444433 3567999999843211111111111 23445566555443 367777776654433 34456
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
..+.+.+.|+|+|+|. |+..+..+++. +++||.++- .|++...+.-+.+ .|++.|.++|-+
T Consensus 81 ~l~~l~~~gvDgvIV~--------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~-lG~~rvvLSrEL 144 (443)
T PRK15452 81 DLEPVIAMKPDALIMS--------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQ-MGLTRVILSREL 144 (443)
T ss_pred HHHHHHhCCCCEEEEc--------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHH-CCCcEEEECCcC
Confidence 6777889999999885 34556666664 367777665 4677666664444 688888888765
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.42 Score=46.74 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+..+.++.+.+.|++.|.+..-... ...-++.++++++.. +++|++ |+|.|.+.+..+++ .|||+|-+|-|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~-aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVE-AGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHH-cCCCEEEECcc
Confidence 4567888899999999988532221 134578899999875 566666 99999999999998 69999875533
|
|
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.8 Score=39.90 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=93.5
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++..+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|...+.+.+++..+.
T Consensus 121 v~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 121 VHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPA------------LERIRACRPVLQEVYEQ 188 (391)
T ss_pred CCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 45799988874 67899999998854 446776532 22 2444 24555666666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh--hCCCcEEE----ec----
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 144 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipVi~----nG---- 144 (287)
++.....=.++.-+.++..+-++.+.+.|+.++-+..-+ .-|..+..+++ ..++||.+ .|
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~ 258 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFA----------YGLDVLEALASDPEINVPIFAHPAFAGALYG 258 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccc----------cchHHHHHHHhcCcCCcEEEecCCccccccc
Confidence 666555555554456788888889999999988775322 23456677776 45677762 23
Q ss_pred ----CCCCHHHHHHHHHhcCccEEEEehh
Q 023070 145 ----NVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 145 ----gI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
||...--..+++.-.|+|.+.++..
T Consensus 259 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 259 SPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 4543345567777789999988764
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.8 Score=42.08 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=45.9
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+|+|.|-+......+... ..+.+.+++..+.+ ..|+.++||| +++.+.++.. +|+|.+.+|.-...-|+
T Consensus 228 agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~-tGVD~Is~Galthsa~~ 298 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQ-TGVTYISSGALTHSVKA 298 (308)
T ss_pred CCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHH-cCCCEEEeCccccCCCc
Confidence 899999886541111111 23445566555443 4789999999 5788888877 79999999964443344
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.4 Score=41.05 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=70.9
Q ss_pred HHHHHHHHH-HcCCCCEEEEec-------cCChhhhhcCcccccccCCh----HHHHHHHHHHhh-ccCCcEEEEecCC-
Q 023070 21 EILLNAARR-VEPYCDYVDINL-------GCPQRIARRGNYGAFLMDNL----PLVKSLVEKLAL-NLNVPVSCKIRVF- 86 (287)
Q Consensus 21 ~~~~~aA~~-~~~g~d~IdiN~-------gcP~~~~~~~~~G~~l~~~~----~~~~~iv~~v~~-~~~~pv~vKiR~g- 86 (287)
+...+..+. ...||.+|.+-- |-|.+...+.--..++++.. .-+...++.+++ ..+.||.+-+...
T Consensus 66 ~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~ 145 (335)
T TIGR01036 66 DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNK 145 (335)
T ss_pred CCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCC
Confidence 344444543 456999999862 22222111110012233221 123444444443 2345665554221
Q ss_pred --C---ChhhHHHHHHHHHHcCCCEEEE--eccCCCCc-CCCCccccHHHHHHHHhhCC-------CcEE--EecCCC--
Q 023070 87 --P---NLQDTIKYAKMLEDAGCSLLAV--HGRTRDEK-DGKKFRADWNAIKAVKNALR-------IPVL--ANGNVR-- 147 (287)
Q Consensus 87 --~---~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~-~~~~~~~~~~~i~~i~~~~~-------ipVi--~nGgI~-- 147 (287)
. ..++..+.++.+.+ .+|+|.+ +.-..... .......-.+.++.+++.++ +||+ .+-++.
T Consensus 146 ~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~ 224 (335)
T TIGR01036 146 DTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTES 224 (335)
T ss_pred CCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHH
Confidence 1 23344444444443 3999977 22221111 01000111244566665554 8887 445554
Q ss_pred CHHHHHHHHHhcCccEEEEehhhh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+..++.+.+.+.|+|||.+.--+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCC
Confidence 366666666668999998765443
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.5 Score=36.16 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=70.1
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQ 90 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~ 90 (287)
++|||- ++++...| ++.|+|.|-+-+--+.+. .-+++.+.++.+.+.... .++|.+. +
T Consensus 1 vKiCGi~~~ed~~~a---~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn-------~ 60 (203)
T cd00405 1 VKICGITTLEDALAA---AEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVN-------E 60 (203)
T ss_pred CEECCCCCHHHHHHH---HHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeC-------C
Confidence 357774 45544333 456899999986432210 123566666666654421 3445443 2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH--HHHhcCccEEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK--CLEETGCEGVLS 166 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~--~l~~~gad~Vmi 166 (287)
+..++.+.+.+.|+++|++|+.. +.+.++.+++..+.+++-.=++.+..+... ... .++|.+++
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e-----------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~aD~il~ 126 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDE-----------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYA-GEVDAILL 126 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhcc-ccCCEEEE
Confidence 33445556668899999999642 124567777766666664334555555442 222 58999865
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.06 E-value=4 Score=37.02 Aligned_cols=161 Identities=20% Similarity=0.321 Sum_probs=90.8
Q ss_pred CCCCEEEEecCCCHHH------HHHHHH-HHcCCCCEEEEec-cCCh--h--hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCANDPEI------LLNAAR-RVEPYCDYVDINL-GCPQ--R--IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~------~~~aA~-~~~~g~d~IdiN~-gcP~--~--~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-....- ++...+ +++..--=|-||+ .|+. . ...+.+|.|-+++ +....++
T Consensus 41 ~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tke 120 (286)
T COG0191 41 EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKE 120 (286)
T ss_pred hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHH
Confidence 4679999996543332 223333 2333222355664 3433 2 3345666665543 3334455
Q ss_pred HHHHHhhccCCcEEEEecC-C-C--------C---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P--------N---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAV 132 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~--------~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i 132 (287)
+++... ..+++|-+-+.. | . + ..++.+..+.++..|+|.|.+.=.+.-+.+. .....+.+.++++
T Consensus 121 vv~~ah-~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i 199 (286)
T COG0191 121 VVEFAH-AYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEI 199 (286)
T ss_pred HHHHHH-HcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHH
Confidence 555432 335666555432 1 1 1 2244455556667889999663222222222 1224688999999
Q ss_pred HhhCCCcEEEecCCC-CHHHHHHHHHhcCccEEEEehh
Q 023070 133 KNALRIPVLANGNVR-HMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~-s~~da~~~l~~~gad~VmiGR~ 169 (287)
++.+++|++.-||=- +.+++++.++ .|+--|=|.+-
T Consensus 200 ~~~~~~PlVlHGgSGip~~eI~~aI~-~GV~KvNi~Td 236 (286)
T COG0191 200 QEAVSLPLVLHGGSGIPDEEIREAIK-LGVAKVNIDTD 236 (286)
T ss_pred HHHhCCCEEEeCCCCCCHHHHHHHHH-hCceEEeeCcH
Confidence 999999999777532 4478899998 58877777653
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=39.70 Aligned_cols=103 Identities=15% Similarity=0.268 Sum_probs=63.5
Q ss_pred HHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCCc---------------CCCCccccHHHH
Q 023070 66 SLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAI 129 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---------------~~~~~~~~~~~i 129 (287)
+..+.++..-..-+..=+-.|+ +.+.+.++++.+.+.|+|.|-+-=-+.++. .+.+....++.+
T Consensus 6 ~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~ 85 (265)
T COG0159 6 QKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELV 85 (265)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3344444333223334444565 788999999999999999998831111111 112223457888
Q ss_pred HHHHhh-CCCcEEEecCCC-----CHHHHHHHHHhcCccEEEEeh
Q 023070 130 KAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 130 ~~i~~~-~~ipVi~nGgI~-----s~~da~~~l~~~gad~VmiGR 168 (287)
+++++. .++|++.-+-.+ -.+...+..++.|+||+++-=
T Consensus 86 ~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD 130 (265)
T COG0159 86 EEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD 130 (265)
T ss_pred HHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 888854 789998776432 234444555668999999853
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.56 Score=42.23 Aligned_cols=86 Identities=27% Similarity=0.379 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH---HHhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~---l~~~gad 162 (287)
|.+...++++.+.+.|++.|.+-|-+.+..... ..-..+.++.+.+.+ ++||++.-+-.+.+++.+. .++.|+|
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls-~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLT-DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCC-HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 556677889999999999999988776643211 111124455555554 5898866555555555443 3446999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+.-..+..|
T Consensus 95 ~v~v~pP~y~~~ 106 (281)
T cd00408 95 GVLVVPPYYNKP 106 (281)
T ss_pred EEEECCCcCCCC
Confidence 999988776554
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.57 Score=42.61 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=46.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccccc---CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+-|. ++++|+|.|||+.-+-.+ |+... ...+.+..+++++++..++||+|...- .+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-------g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~-------~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSK-------PE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCC-------HH
Confidence 4555555444 678899999999533211 22222 234456678888887778999988421 24
Q ss_pred HHHHHHHcCCCEE
Q 023070 95 YAKMLEDAGCSLL 107 (287)
Q Consensus 95 ~a~~l~~~G~~~I 107 (287)
.++.+.++|++.|
T Consensus 102 va~~AL~~GadiI 114 (282)
T PRK11613 102 VIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 4555556677766
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=41.32 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=69.5
Q ss_pred cCChHHHHHHHHHHhhccCCcEEEEecC--C----C----C-----hhhHHHHHHHHHHcCC----CEEEEeccCCCCcC
Q 023070 58 MDNLPLVKSLVEKLALNLNVPVSCKIRV--F----P----N-----LQDTIKYAKMLEDAGC----SLLAVHGRTRDEKD 118 (287)
Q Consensus 58 ~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g----~----~-----~~~~~~~a~~l~~~G~----~~I~vh~rt~~~~~ 118 (287)
..+.+..+++++... ..+++|-.-+.. | . . ..++.+..+.+++.|+ |.+.|.=+|.-+.+
T Consensus 142 EeNI~~TkevVe~Ah-~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Y 220 (350)
T PRK09197 142 EENIEICSKYLERMA-KAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVY 220 (350)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCc
Confidence 345666677666554 335555443321 1 0 0 1233333344456777 89977544444333
Q ss_pred C-CCccccHHHHHHHHhhC---------CCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 119 G-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 119 ~-~~~~~~~~~i~~i~~~~---------~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
. .....|++.++++++.+ ++|++.-||=..+ ++++++++ .|+.-|=|++.+.
T Consensus 221 k~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~-~GI~KINi~T~l~ 283 (350)
T PRK09197 221 KPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS-YGVVKMNIDTDTQ 283 (350)
T ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH-CCCeeEEeCcHHH
Confidence 2 22357899999999988 7999988875555 67777887 6898888887653
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.65 Score=42.30 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEe-cCCCCHHHHHHH---HHhcC
Q 023070 88 NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKC---LEETG 160 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~n-GgI~s~~da~~~---l~~~g 160 (287)
+.+...+.++.+.+.| ++.|.+.|-|.+..... ..-..+.++.+.+.+ ++||++. |+..+ +++.+. .++.|
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt-~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t-~~~i~la~~a~~~G 96 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLS-TEEKKEIFRIAKDEAKDQIALIAQVGSVNL-KEAVELGKYATELG 96 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHHhC
Confidence 4556678888899999 99999988877643221 111223444455544 5898766 55544 544433 34579
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
+|+||+.-+.+..|.
T Consensus 97 ad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 97 YDCLSAVTPFYYKFS 111 (290)
T ss_pred CCEEEEeCCcCCCCC
Confidence 999999988877664
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.3 Score=40.24 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH-HHHHHHh-hCCCcE
Q 023070 64 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKN-ALRIPV 140 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~-~i~~i~~-~~~ipV 140 (287)
+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+-..+ +.++. .++.+++ ..++.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~ea~~agaDiI~LDn~~---------~e~l~~av~~~~~~~~~~~l 239 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIAALRAQPDVLQLDKFS---------PQQATEIAQIAPSLAPHCTL 239 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhhccCCCeEE
Confidence 345566666543 344555542 3445666678999999884222 12222 2222221 246789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++||| +++.+.++-+ +|+|.+.+|--
T Consensus 240 eaSGGI-~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 240 SLAGGI-NLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEECcc
Confidence 999999 5788888887 79999988864
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=92.79 E-value=2.6 Score=36.64 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
+++.+.++++.+++..+.|+.+.+-.........++++.+.++|++.|++++. . ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~---------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG--P---------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--C---------CHHHHHHHHH-cCCE
Confidence 56777788888876555566655544321135667888899999999999754 1 1244555554 4677
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.. +.+.+++.++.+ .|+|++.+
T Consensus 105 ~i~~--v~~~~~~~~~~~-~gad~i~~ 128 (236)
T cd04730 105 VIPT--VTSVEEARKAEA-AGADALVA 128 (236)
T ss_pred EEEe--CCCHHHHHHHHH-cCCCEEEE
Confidence 7653 678888887776 58999876
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.4 Score=35.65 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 127 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 127 ~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+.++++.+ +.|+-..=||.++++....=. -+|||++|..+.
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgs--vaDGVvvGSkiv 239 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGS--VADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhh--hccceEecHHHH
Confidence 4577888887 799988889999999997776 499999998775
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.65 Score=38.41 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH----HHHhcCccEEE
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 165 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~----~l~~~gad~Vm 165 (287)
+...++++.+.+.|++.+.+........... ...++.+..+++..++|++++..+.++.+... .....|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 4678889999999999998865443322111 11224567777778899999998877776542 44557999999
Q ss_pred Eehhh
Q 023070 166 SAESL 170 (287)
Q Consensus 166 iGR~~ 170 (287)
+.-..
T Consensus 90 l~~~~ 94 (200)
T cd04722 90 IHGAV 94 (200)
T ss_pred EeccC
Confidence 97554
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 287 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 3e-16 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 5e-15 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 1e-13 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 7e-45
Identities = 60/267 (22%), Positives = 116/267 (43%), Gaps = 25/267 (9%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 64
P +R + VQ ++P L AAR + ++D+N GCP +++ + G G L+ +L
Sbjct: 56 PHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHF 114
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
+ +V +L +++ S K R+ + + ++L + G + +H RT RA
Sbjct: 115 RYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRA 172
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF----AGF 180
+W A+ ++ RIP +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 173 EWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFL 230
Query: 181 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW-FRIQPG- 238
R+ ++ S E +LL++ E+ V +R + + G
Sbjct: 231 RSGKYSEPSREEILRTFERHLELLIKT--KGERKAV--VEMRKFLA-----GYTKDLKGA 281
Query: 239 --VREDLNAQNRLTFEFLYNLVDRLRE 263
RE + + L + +
Sbjct: 282 RRFREKVMKIE--EVQILKEMFYNFIK 306
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPL 63
PE+ P+ +Q +DP+ L AAR E + D +++NLGCP A+ G YGA L+ +L
Sbjct: 54 RPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLAR 113
Query: 64 VKSLVEKLALNLNVPVSCKIRV-------FPNLQDTIKYAKMLEDAGCSLLAVHGR 112
V+ +++ + + VPV+ K+R+ + L ++ + + +AG + VH R
Sbjct: 114 VREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSV---EAMAEAGVKVFVVHAR 166
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 7e-06
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 91 DTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 148
T++ AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186
Query: 149 MEDVQKCLEETGCEGV 164
+ ++ + + G
Sbjct: 187 PDMYKRVM-DLGVHCS 201
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 9e-06
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
D + L GC+ V T KDG + +K V A PV+A+G V ++
Sbjct: 147 DLYETLDRLNKEGCARYVV---TDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLD 203
Query: 151 DVQKC--LEETGCEGVLSAESLLEN 173
D++ L G EG + ++L
Sbjct: 204 DLRAIAGLVPAGVEGAIVGKALYAK 228
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
D + L+ GCS V T KDG + + + V + PV+A+G V ++
Sbjct: 150 DLWDVLERLDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLD 206
Query: 151 DVQKC--LEETGCEGVLSAESLLEN 173
D++ L G EG + ++L
Sbjct: 207 DLRAIATLTHRGVEGAIVGKALYAR 231
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 149
D + K L++ G + T EKDG D++ K + + VLA G +
Sbjct: 144 IDPVSLLKRLKEYGLEEIVH---TEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSE 200
Query: 150 EDVQK-----CLEETGCEGVLSAESLLEN 173
++ +GV+ + LE
Sbjct: 201 NSLKTAQKVHTETNGLLKGVIVGRAFLEG 229
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* Length = 297 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 5e-04
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 92 TIKYAKMLEDAG-CSLLAVHGRTRD-EKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRH 148
T + A + E+AG +++A+ D G R +D IK + A+ IPV+A + H
Sbjct: 30 TPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGH 89
Query: 149 MEDVQKCLEETGCEGVLSAESL 170
+ LE G + + +E L
Sbjct: 90 FVEAM-ILEAIGVDFIDESEVL 110
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---GKKFRADWNA--IKAVKNALRIPVLAN 143
+T++ A+ +E AG +++ + + + + +K + +P++
Sbjct: 227 FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTT 286
Query: 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+ + L + V A L + L
Sbjct: 287 NRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 28/166 (16%)
Query: 8 DRPLFVQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ +F + A + + + I+L Q I +F
Sbjct: 116 NGLIFANLGSEATAAQAKEAVEMIG--ANALQIHLNVIQEIVMPEGDRSF-----SGALK 168
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRT--------RDE 116
+E++ ++VPV K F + + A L +AG + + + +G T R +
Sbjct: 169 RIEQICSRVSVPVIVKEVGFGMSKAS---AGKLYEAGAAAVDIGGYGGTNFSKIENLRRQ 225
Query: 117 KDGKKFRADW-----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 156
+ F W ++ +++ ++A+G ++ DV K +
Sbjct: 226 RQISFFN-SWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAI 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.97 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.97 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.97 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.97 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.96 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.96 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.96 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.96 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.96 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.96 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.96 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.96 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.96 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.96 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.96 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.95 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.95 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.95 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.95 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.94 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.94 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.94 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.94 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.93 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.92 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.91 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.85 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.84 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.81 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 99.8 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.79 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.76 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.73 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.73 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.73 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.71 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.7 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.67 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.66 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.65 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.64 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.6 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.59 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.58 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.56 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.56 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.56 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.55 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.54 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.53 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.52 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.5 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.5 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.49 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.47 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.47 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.46 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 99.44 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.43 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.41 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.38 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.37 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.36 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.35 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.34 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.34 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.31 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 99.31 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.3 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 99.29 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 99.28 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.27 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.27 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 99.26 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 99.25 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 99.24 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.24 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 99.21 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 99.2 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 99.19 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.16 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 99.15 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.15 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.15 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.14 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.14 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 99.14 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.13 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.13 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 99.13 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.12 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 99.12 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 99.11 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 99.1 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 99.04 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 99.04 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.03 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 99.03 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.01 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 99.01 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 99.01 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 99.0 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.0 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.99 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.99 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.98 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.98 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.96 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.95 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.95 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.93 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.92 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.92 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.91 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.91 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.91 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.9 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 98.9 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.89 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.89 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 98.86 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.85 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.83 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.83 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.83 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.83 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.81 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.81 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.8 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 98.79 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.78 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.78 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 98.77 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 98.77 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 98.77 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.76 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.76 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.75 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 98.74 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 98.73 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 98.73 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 98.72 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 98.72 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.72 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 98.71 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 98.7 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.7 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 98.7 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 98.69 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 98.69 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.67 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 98.66 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 98.66 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.65 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.65 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 98.65 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.64 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.62 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.62 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 98.61 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 98.61 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 98.61 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.59 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.59 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 98.59 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 98.57 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 98.56 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 98.55 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 98.54 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.53 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.53 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 98.52 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 98.52 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 98.51 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.5 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.5 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.5 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 98.5 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 98.49 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.49 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 98.48 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.47 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.47 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.46 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.45 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 98.45 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 98.45 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 98.44 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.44 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 98.44 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 98.43 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 98.42 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.41 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 98.41 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 98.4 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 98.38 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.38 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.36 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 98.35 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.34 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 98.32 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 98.31 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.25 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.23 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 98.23 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 98.23 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.21 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.2 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.19 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 98.17 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.17 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.14 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 98.14 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.13 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 98.11 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.07 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.06 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.99 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.98 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.98 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 97.98 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.96 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.93 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.92 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.89 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 97.89 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 97.89 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 97.86 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 97.84 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.84 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 97.76 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 97.75 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 97.74 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.74 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 97.73 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.72 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 97.71 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.63 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.63 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 97.63 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 97.63 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 97.62 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.62 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 97.62 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 97.61 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.6 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 97.57 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 97.54 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.53 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 97.5 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 97.41 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.38 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.38 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.37 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.35 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.35 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.33 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 97.32 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.31 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 97.3 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.27 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.26 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 97.2 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 97.19 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 97.19 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 97.16 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 97.15 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 97.14 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.13 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.1 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.06 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 97.01 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.0 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 96.96 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 96.95 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.92 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.92 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 96.92 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 96.89 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.88 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.87 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.81 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 96.81 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.81 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 96.8 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 96.79 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.75 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 96.74 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 96.73 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 96.73 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.73 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.72 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 96.72 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.72 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 96.71 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.71 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 96.7 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 96.69 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.69 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.67 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 96.66 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.66 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.66 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 96.62 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 96.6 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.6 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 96.59 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.58 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.54 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 96.53 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 96.53 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 96.52 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.51 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 96.5 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 96.5 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 96.49 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 96.49 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 96.48 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 96.46 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 96.45 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 96.44 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 96.42 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 96.4 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 96.39 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 96.38 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 96.37 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 96.37 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.37 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.37 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 96.36 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 96.35 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 96.34 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.34 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.34 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.33 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 96.29 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.28 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.28 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 96.24 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 96.24 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 96.19 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 96.19 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 96.18 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 96.17 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 96.16 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 96.09 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 96.05 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.04 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 96.04 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.04 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 96.03 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.02 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 96.02 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 96.01 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.95 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 95.95 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.93 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 95.92 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 95.9 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 95.86 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 95.85 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 95.84 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 95.84 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.84 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 95.83 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.82 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 95.81 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 95.78 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 95.77 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 95.76 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.75 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 95.74 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 95.71 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 95.7 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 95.69 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 95.68 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.67 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 95.67 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 95.67 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.66 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 95.66 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 95.65 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 95.64 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 95.63 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 95.61 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 95.6 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 95.6 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.57 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 95.56 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 95.54 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 95.54 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.49 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 95.48 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 95.47 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 95.46 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 95.44 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 95.41 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 95.38 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 95.37 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 95.34 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 95.31 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 95.28 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 95.26 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.25 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 95.24 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 95.23 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 95.23 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 95.21 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 95.17 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 95.17 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 95.13 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 95.13 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 95.13 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 95.1 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 95.1 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 95.07 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.06 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 95.05 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 95.03 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 95.02 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 95.02 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 95.02 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 94.96 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 94.94 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 94.93 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 94.91 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 94.81 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 94.76 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 94.76 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 94.75 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 94.69 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 94.66 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 94.64 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 94.54 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 94.5 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 94.5 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 94.48 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.46 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 94.45 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 94.43 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 94.42 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 94.4 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 94.37 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 94.34 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 94.33 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 94.33 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 94.31 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 94.3 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 94.27 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 94.22 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 94.21 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.2 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.18 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 94.16 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.14 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.13 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 94.08 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 94.07 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 94.07 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.07 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.06 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 94.02 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 94.01 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 94.0 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 93.99 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 93.99 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 93.94 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 93.92 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.91 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.9 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 93.82 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.82 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 93.79 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 93.73 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 93.72 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.62 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 93.58 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.53 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 93.51 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 93.5 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 93.49 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 93.43 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.43 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.41 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 93.32 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 93.3 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 93.22 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 93.2 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 93.09 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 93.09 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 93.06 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 93.06 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 93.04 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 93.04 |
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=346.56 Aligned_cols=252 Identities=22% Similarity=0.332 Sum_probs=214.6
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+++.+.|+++||+|++|++|++||+.++ .|||+||||+|||.+++++++||++|+++++++.++++++++.+++||++|
T Consensus 53 ~~~~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vK 132 (350)
T 3b0p_A 53 FRPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVK 132 (350)
T ss_dssp CCGGGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred cCCCCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEE
Confidence 5677899999999999999999999764 589999999999999999999999999999999999999999899999999
Q ss_pred ecCCCCh----hhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-----CccccHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 023070 83 IRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADWNAIKAVKNAL-RIPVLANGNVRHMEDV 152 (287)
Q Consensus 83 iR~g~~~----~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-----~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da 152 (287)
+|+|++. +++.++++.++++|+++|+||+|+..+.... ..+.+|+.++++++.+ ++|||+||||+|++|+
T Consensus 133 iR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda 212 (350)
T 3b0p_A 133 MRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEA 212 (350)
T ss_dssp EESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHH
T ss_pred EecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHH
Confidence 9998753 3678999999999999999999987532111 1146899999999998 8999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhh
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 232 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~ 232 (287)
.++++ |||+||+||+++.|||+|.++....| + ..+.++..+..+.+.+|++....++..+..+|+|+.||+++
T Consensus 213 ~~~l~--GaD~V~iGRa~l~~P~l~~~i~~~l~---~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~kh~~~~~~g- 285 (350)
T 3b0p_A 213 LFHLK--RVDGVMLGRAVYEDPFVLEEADRRVF---G-LPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRG- 285 (350)
T ss_dssp HHHHT--TSSEEEECHHHHHCGGGGTTHHHHTT---C-CSCCCCHHHHHHHHHHHHHHHHHHTCCHHHHHTTSTTTTTT-
T ss_pred HHHHh--CCCEEEECHHHHhCcHHHHHHHHHhc---C-CCCCCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHcc-
Confidence 99997 79999999999999999999986544 2 23345566677777788775545666789999999987775
Q ss_pred hcCChHHHHHHHhcchhcHHHHHHHHHHHHHh
Q 023070 233 FRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 264 (287)
Q Consensus 233 ~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 264 (287)
+++...+|+.|++.. +.+++.++++++...
T Consensus 286 ~~~~~~~r~~l~~~~--~~~~~~~~l~~~~~~ 315 (350)
T 3b0p_A 286 RPKGRLWRRLLSEGR--SLQALDRALRLMEEE 315 (350)
T ss_dssp STTHHHHHHHHHHHC--SHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCC--CHHHHHHHHHHHhhh
Confidence 567778999999886 889999999887543
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=340.24 Aligned_cols=250 Identities=22% Similarity=0.363 Sum_probs=217.4
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
.++.+.|+++||+|++|++|++||+.+++.||+||||+|||.+++++++||++|+++++++.++++++++.+++||++|+
T Consensus 54 ~~~~~~~~~~QL~g~~~~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 133 (318)
T 1vhn_A 54 PQPHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKT 133 (318)
T ss_dssp CCTTCTTEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred hCcCCCeEEEEeCCCCHHHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 46778999999999999999999997754499999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
|.|++..+..++++.++++|+++|+||+|+..+. +.++++|+.++++++ ++|||+||||+|++|+.++++.+|||+
T Consensus 134 r~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~--~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~ 209 (318)
T 1vhn_A 134 RLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDG 209 (318)
T ss_dssp ESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred cCCCChHHHHHHHHHHHHhCCCEEEEcCCCcccc--CCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCE
Confidence 9999877778999999999999999999988653 334688998888887 999999999999999999999789999
Q ss_pred EEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhhcCChHHH
Q 023070 164 VLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQPGVR 240 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~r~~~~~~~~~~~~~~~~~r 240 (287)
||+||+++.|||+|.++... +.+| ..+.++..+..+++.+|+++..+ ++. .+..+|+|+.||++. +++...+|
T Consensus 210 V~iGR~~l~~P~l~~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~r 285 (318)
T 1vhn_A 210 LLVARGAIGRPWIFKQIKDF--LRSG-KYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKD-LKGARRFR 285 (318)
T ss_dssp EEESGGGTTCTTHHHHHHHH--HHHS-CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTT-CTTHHHHH
T ss_pred EEECHHHHhCcchHHHHHHH--HhCC-CCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhc-CCChHHHH
Confidence 99999999999999988642 2224 33345677889999999988654 443 478899999998775 56777899
Q ss_pred HHHHhcchhcHHHHHHHHHHHHH
Q 023070 241 EDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
+.+++.. +.+++.++++++.+
T Consensus 286 ~~~~~~~--~~~~~~~~~~~~~~ 306 (318)
T 1vhn_A 286 EKVMKIE--EVQILKEMFYNFIK 306 (318)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHHcCC--CHHHHHHHHHHHHH
Confidence 9999886 88999999988643
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=242.23 Aligned_cols=162 Identities=14% Similarity=0.204 Sum_probs=144.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----- 85 (287)
++|++||+.+ ++|||+||||++| |..|.|+++||++++++++++.+++++|++++++||++|++.
T Consensus 144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~ 223 (338)
T 1z41_A 144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence 7899999865 5799999999886 999999999999999999999999999999999999999998
Q ss_pred -CCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 -g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
|++.+++.++++.+++.|+++|+||+++.... .......+++.++++++.+++||+++|||+|++++.++++.++||+
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~ 303 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADL 303 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceE
Confidence 57788899999999999999999999875421 1111124789999999999999999999999999999999766999
Q ss_pred EEEehhhhhCccchhchhh
Q 023070 164 VLSAESLLENPALFAGFRT 182 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~ 182 (287)
|++||+++.||+|+.++..
T Consensus 304 V~iGR~~i~nPdl~~ki~~ 322 (338)
T 1z41_A 304 IFIGRELLRDPFFARTAAK 322 (338)
T ss_dssp EEECHHHHHCTTHHHHHHH
T ss_pred EeecHHHHhCchHHHHHHc
Confidence 9999999999999998875
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-30 Score=236.71 Aligned_cols=167 Identities=21% Similarity=0.270 Sum_probs=144.9
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-------c
Q 023070 8 DRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-------L 75 (287)
Q Consensus 8 ~~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-------~ 75 (287)
+.|+++||+|| ++++|+++++.+..++|+||||++||+.. |..++++++.+.++++++++. .
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~------G~~~l~~~~~l~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTA------GLRSLQGKAELRRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCC------CccccCCHHHHHHHHHHHHHHHhhccccC
Confidence 57999999997 89999999999988899999999999963 345789999999999999754 6
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCccc----cHHHHHHHHhhC--CC
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFRA----DWNAIKAVKNAL--RI 138 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~~----~~~~i~~i~~~~--~i 138 (287)
++||+||++.+++.++..++|+.++++|+|+|++|+++... ..+.+|++ .|+.++++++.+ ++
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~i 299 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRV 299 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCS
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCc
Confidence 89999999999988899999999999999999999887432 11223333 468899999998 89
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 181 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~ 181 (287)
|||++|||+|++|+.+++. .|||+||+||++ +.+||++.++.
T Consensus 300 pvI~~GGI~s~~da~~~l~-~GAd~V~vgra~l~~gP~~~~~i~ 342 (367)
T 3zwt_A 300 PIIGVGGVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp CEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHhcCcHHHHHHH
Confidence 9999999999999999998 699999999999 57899998775
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-30 Score=235.36 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=143.0
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC----
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~---- 85 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|.||+++++|++++.+++++|++.+++||+||++.
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~ 222 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYH 222 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47899999966 469999999988 5999999999999999999999999999999999999999997
Q ss_pred --CCChhhHHHHHHHHHHcCCCEEEEecc-CCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 --FPNLQDTIKYAKMLEDAGCSLLAVHGR-TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 --g~~~~~~~~~a~~l~~~G~~~I~vh~r-t~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
|++.+++.++++.++++|+|+|+||.+ +..+........+++.++++++.+++||+++|||+|+++++++++.++||
T Consensus 223 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD 302 (340)
T 3gr7_A 223 PDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRAD 302 (340)
T ss_dssp TTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCee
Confidence 356789999999999999999999954 33221111123578999999999999999999999999999999976699
Q ss_pred EEEEehhhhhCccchhchhh
Q 023070 163 GVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~~ 182 (287)
+|++||+++.||+|+.++..
T Consensus 303 ~V~iGR~~lanPdl~~ki~~ 322 (340)
T 3gr7_A 303 LVFLGRELLRNPYWPYAAAR 322 (340)
T ss_dssp EEEECHHHHHCTTHHHHHHH
T ss_pred EEEecHHHHhCchHHHHHHH
Confidence 99999999999999998875
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=239.50 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=145.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc----CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~----~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
.+.|+++||+|+++++|.++|+.++ .|+|+||||++||+.. + |..|+.+|+.+.++++++++.+++||+||
T Consensus 125 ~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~---g--g~~l~~~~e~~~~il~av~~~~~~PV~vK 199 (354)
T 4ef8_A 125 GKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP---G--KPQVAYDFDAMRQCLTAVSEVYPHSFGVK 199 (354)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST---T--SCCGGGSHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC---C--chhhccCHHHHHHHHHHHHHhhCCCeEEE
Confidence 3689999999999999999999776 3799999999999963 2 67888999999999999999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHcC-CCEEEEeccC------------CC-----CcCCCCc----cccHHHHHHHHhhC-CCc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRT------------RD-----EKDGKKF----RADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G-~~~I~vh~rt------------~~-----~~~~~~~----~~~~~~i~~i~~~~-~ip 139 (287)
+|.+++..+..++++.++++| +++|+++..+ .. ...+++| +.+|+.++++++.. ++|
T Consensus 200 i~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ip 279 (354)
T 4ef8_A 200 MPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL 279 (354)
T ss_dssp ECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSE
T ss_pred ecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCC
Confidence 999998778888899999998 9999875432 11 1112233 35799999999986 799
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
||++|||+|++|+.+++. .|||+||+||+++.| ||+|.++.
T Consensus 280 II~~GGI~s~~da~~~l~-aGAd~V~vgra~l~~GP~~~~~i~ 321 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp EEEESCCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHH
T ss_pred EEEECCcCCHHHHHHHHH-cCCCEEEEhHHHHHhCHHHHHHHH
Confidence 999999999999999998 699999999999998 99998774
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=235.37 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=137.6
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF--- 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g--- 86 (287)
++|++||+.+ ++|||+||||++| |..|.|+++||++++++++++.+|+++|+++++ .||++|++..
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 7999999865 5699999999886 999999999999999999999999999999885 3999999874
Q ss_pred ------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
++.+++.++++.++++|+++|+||+++..+.. ++ .+|+.++++++.+++|||++||| +++++.++++.++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~--~~-~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~ 321 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--IT-YPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNT 321 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------C-CCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCC--Cc-chHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCC
Confidence 23467889999999999999999998754321 11 36888999999999999999999 6999999999877
Q ss_pred ccEEEEehhhhhCccchhchhh
Q 023070 161 CEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~ 182 (287)
||+||+||+++.||||+.+++.
T Consensus 322 aD~V~igR~~l~~P~l~~k~~~ 343 (377)
T 2r14_A 322 ADAVAFGRPFIANPDLPERFRL 343 (377)
T ss_dssp CSEEEESHHHHHCTTHHHHHHH
T ss_pred ceEEeecHHHHhCchHHHHHHc
Confidence 9999999999999999998875
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=232.13 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=142.1
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+|||| |+||..|.|+|.||+++++|++++.+++++|++++ ++||++|++.
T Consensus 142 i~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~ 221 (343)
T 3kru_A 142 VKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD 221 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred HHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh
Confidence 47899999865 5699999999 88999999999999999999999999999999998 6899999997
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|++.+++.++++.++++ +|+|+| +|++..+........+|+.++++++.+++||+++|||+|+++++++++.++
T Consensus 222 ~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~ 300 (343)
T 3kru_A 222 YMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNER 300 (343)
T ss_dssp SSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTS
T ss_pred hhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchh
Confidence 35678899999999999 999999 576654221111135789999999999999999999999999999999877
Q ss_pred ccEEEEehhhhhCccchhchh
Q 023070 161 CEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~ 181 (287)
||+||+||+++.||+|+.+++
T Consensus 301 aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 301 ADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp CSEEEESHHHHHCTTHHHHTC
T ss_pred hHHHHHHHHHhcCCeEEEEEe
Confidence 999999999999999999886
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=234.99 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=140.3
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+||||++| |..|.|+|.||+++++|++++.+|+++|+++++ .||++|++.+.
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~ 250 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDH 250 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 8999999965 6799999999886 999999999999999999999999999999885 59999999752
Q ss_pred -------ChhhHHHHHHHHHHcC------CCEEEEeccCCCCcCCCC------ccccHHHHHHHHhhCCCcEEEecCCCC
Q 023070 88 -------NLQDTIKYAKMLEDAG------CSLLAVHGRTRDEKDGKK------FRADWNAIKAVKNALRIPVLANGNVRH 148 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G------~~~I~vh~rt~~~~~~~~------~~~~~~~i~~i~~~~~ipVi~nGgI~s 148 (287)
+.+++.++++.+++.| +++|+||+++..+....+ +..+|+.++.+++.+++|||++||| |
T Consensus 251 ~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~ 329 (402)
T 2hsa_B 251 LDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-T 329 (402)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC-C
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC-C
Confidence 2356789999999999 999999998765411111 1136888999999999999999999 9
Q ss_pred HHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++.++++.++||+||+||+++.||||+.+++.
T Consensus 330 ~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~~ 363 (402)
T 2hsa_B 330 RELGIEAVAQGDADLVSYGRLFISNPDLVMRIKL 363 (402)
T ss_dssp HHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHCCCCceeeecHHHHhCchHHHHHHh
Confidence 9999999998789999999999999999998875
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=227.28 Aligned_cols=166 Identities=16% Similarity=0.235 Sum_probs=136.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCC-EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVE-PYCD-YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d-~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.|+++||+|+++++|.++|+.++ .+++ +||||++||+.. + |.+|+++|+.+.++++++++.+++||+||+|
T Consensus 127 ~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~---G--~~~l~~~~e~l~~il~av~~~~~~PV~vKi~ 201 (345)
T 3oix_A 127 DSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP---G--XPQIAYDFETTDQILSEVFTYFTKPLGIKLP 201 (345)
T ss_dssp TCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST---T--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEEC
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC---C--chhhcCCHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4789999999999999999999886 4665 999999999964 2 5788899999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEE-------------EeccCCCC-----cCCCCcccc----HHHHHHHHhhC--CCcE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLA-------------VHGRTRDE-----KDGKKFRAD----WNAIKAVKNAL--RIPV 140 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~-------------vh~rt~~~-----~~~~~~~~~----~~~i~~i~~~~--~ipV 140 (287)
.+.+ ..++++.++++|++.|+ +|.|+... ..+++|++. |+.++++++.+ ++||
T Consensus 202 p~~~---~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipI 278 (345)
T 3oix_A 202 PYFD---IVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQI 278 (345)
T ss_dssp CCCC---HHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEE
T ss_pred CCCC---HHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcE
Confidence 8754 45666666676665553 44443221 122344444 78899999998 7999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehh-hhhCccchhchh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAES-LLENPALFAGFR 181 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~-~l~nP~lf~~~~ 181 (287)
|++|||+|++|+.+++. .|||+||+||+ ++.+||+|.++.
T Consensus 279 Ig~GGI~s~~da~~~l~-aGAd~V~igra~~~~gP~~~~~i~ 319 (345)
T 3oix_A 279 IGTGGVXTGRDAFEHIL-CGASMVQIGTALHQEGPQIFKRIT 319 (345)
T ss_dssp EEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHH
T ss_pred EEECCCCChHHHHHHHH-hCCCEEEEChHHHhcChHHHHHHH
Confidence 99999999999999998 69999999999 899999998774
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-29 Score=232.67 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=137.0
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+||||++| |..|.|++.||++++++++++.+++++|+++++ .||++|++...
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~ 246 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHY 246 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 7999999865 6799999999886 999999999999999999999999999999985 39999999642
Q ss_pred -------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+.+++.++++.++++|+++|++|+++..+. .+...+|+.++.+++.+++||+++||| +++++.++++.++
T Consensus 247 ~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~ 323 (376)
T 1icp_A 247 NEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--WEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIEDR 323 (376)
T ss_dssp TTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC--CCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHCCC
Confidence 234578999999999999999999875432 112245677889999999999999999 8999999999878
Q ss_pred ccEEEEehhhhhCccchhchhh
Q 023070 161 CEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~ 182 (287)
||+||+||+++.||||+.+++.
T Consensus 324 aD~V~~gR~~l~~P~l~~k~~~ 345 (376)
T 1icp_A 324 ADLVAYGRLFISNPDLPKRFEL 345 (376)
T ss_dssp CSEEEESHHHHHCTTHHHHHHH
T ss_pred CcEEeecHHHHhCccHHHHHHc
Confidence 9999999999999999998874
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=228.09 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=138.7
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+||||++| |..|.|+++||++++++++++.+++++|++.++ .||++|++.+.
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 7999999865 6799999999886 999999999999999999999999999999984 39999999862
Q ss_pred --------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 --------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 --------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+.+++.++++.+++.|+++|++|+++..+. . ..+|+.++++++.+++||+++||| |++++.++++.+
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--~--~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g 315 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG--K--PYSEAFRQKVRERFHGVIIGAGAY-TAEKAEDLIGKG 315 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC--C--CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC--C--cccHHHHHHHHHHCCCCEEEECCc-CHHHHHHHHHCC
Confidence 233578899999999999999998865432 1 246888999999999999999999 899999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+||+||+++.||||+.+++.
T Consensus 316 ~aD~V~~gR~~l~~P~~~~~~~~ 338 (364)
T 1vyr_A 316 LIDAVAFGRDYIANPDLVARLQK 338 (364)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHH
T ss_pred CccEEEECHHHHhChhHHHHHHc
Confidence 79999999999999999998874
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=226.85 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=143.3
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|+||+++++|++++.+++++|++.+ ++||++|++.
T Consensus 151 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~ 230 (349)
T 3hgj_A 151 LQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATD 230 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccc
Confidence 47899999865 5799999999999 99999999999999999999999999999998 7999999997
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCC-CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~-~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|++.+++.++++.+++.|+++|+|| |++...... .....+++.++++++.+++||+++|||+|++++.++++.+
T Consensus 231 ~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G 310 (349)
T 3hgj_A 231 WGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAG 310 (349)
T ss_dssp CSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCC
Confidence 5788899999999999999999999 444322111 1113578999999999999999999999999999999976
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||+|++||+++.||+|+.++..
T Consensus 311 ~aD~V~iGR~~lanPdl~~k~~~ 333 (349)
T 3hgj_A 311 SADLVLLGRVLLRDPYFPLRAAK 333 (349)
T ss_dssp SCSEEEESTHHHHCTTHHHHHHH
T ss_pred CceEEEecHHHHhCchHHHHHHH
Confidence 69999999999999999998864
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=226.91 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=138.6
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCC-C-
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF-P- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g-~- 87 (287)
++|++||+.+ ++|||+||||++| |..|.|+++||+++++|++++.+++++|++.++. ||++|++.. +
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 8999999865 6799999999886 9999999999999999999999999999998843 999999983 2
Q ss_pred -------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+.+++.++++.+++.|+++|++|+++..... ...|+.++.+++.+++|||++||| |++++.++++.++
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~----~~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~ 315 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAP----DTPVSFKRALREAYQGVLIYAGRY-NAEKAEQAINDGL 315 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC----CCCHHHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCC----CccHHHHHHHHHHCCCcEEEeCCC-CHHHHHHHHHCCC
Confidence 3457789999999999999999998653211 135788999999999999999999 9999999999867
Q ss_pred ccEEEEehhhhhCccchhchhh
Q 023070 161 CEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~ 182 (287)
||+||+||+++.||||+.+++.
T Consensus 316 aD~V~igR~~i~~P~l~~~~~~ 337 (365)
T 2gou_A 316 ADMIGFGRPFIANPDLPERLRH 337 (365)
T ss_dssp CSEEECCHHHHHCTTHHHHHHH
T ss_pred cceehhcHHHHhCchHHHHHHc
Confidence 9999999999999999998874
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=222.36 Aligned_cols=168 Identities=16% Similarity=0.256 Sum_probs=144.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCC-EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCD-YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d-~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++||+|+++++|.++++.++ .|+| +|+||++||+. + .|..+..+++.+.++++++++.+++||++|++.
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~---~--g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~ 167 (311)
T 1jub_A 93 EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV---P--GEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPP 167 (311)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS---S--SCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECC
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC---C--CcccccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 789999999999999999999765 5899 99999999996 1 156666799999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCC-----C---C---------cCCCCcc----ccHHHHHHHHhhC--CCcEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----D---E---------KDGKKFR----ADWNAIKAVKNAL--RIPVLA 142 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~-----~---~---------~~~~~~~----~~~~~i~~i~~~~--~ipVi~ 142 (287)
+++.++..++++.++++|+|+|++|+++. + . ..+.+++ ..|+.++++++.+ ++|||+
T Consensus 168 ~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~ 247 (311)
T 1jub_A 168 YFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIG 247 (311)
T ss_dssp CCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEE
Confidence 88877888999999999999999998751 1 0 0011122 3488999999998 899999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||+|++|+.+++. .|||+||+||+++. +||++.++.
T Consensus 248 ~GGI~~~~da~~~l~-~GAd~V~vg~~~l~~~p~~~~~i~ 286 (311)
T 1jub_A 248 TGGIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDRII 286 (311)
T ss_dssp ESSCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHH
T ss_pred ECCCCCHHHHHHHHH-cCCCEEEEchHHHhcCcHHHHHHH
Confidence 999999999999997 59999999999996 999998775
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=223.74 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=143.7
Q ss_pred CCCEEEEecCCC-------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-----
Q 023070 8 DRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL----- 75 (287)
Q Consensus 8 ~~p~~~Qi~g~~-------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~----- 75 (287)
+.|+++||++++ +++|.++++.+..|+|+|+||++||+.+ |...+++++++.+++++|++.+
T Consensus 133 ~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr~~~~~~~~ 206 (336)
T 1f76_A 133 DGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDLQA 206 (336)
T ss_dssp CSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 469999999998 9999999998877999999999999864 2345678999999999999887
Q ss_pred ----CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhC
Q 023070 76 ----NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL 136 (287)
Q Consensus 76 ----~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~ 136 (287)
++||++|++.+++.++..++++.++++|+|+|+||+++.... .+.+++ ..++.++++++.+
T Consensus 207 ~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~ 286 (336)
T 1f76_A 207 MHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLEL 286 (336)
T ss_dssp HHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHH
T ss_pred cccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHh
Confidence 899999999988888899999999999999999998763211 011222 2457888999887
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
++|||++|||+|++|+.+++. .|||+||+||+++. |||++.++.
T Consensus 287 ~~~ipVi~~GGI~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~i~ 333 (336)
T 1f76_A 287 NGRLPIIGVGGIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKEIV 333 (336)
T ss_dssp TTSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHHHH
Confidence 899999999999999999998 58999999999998 999999875
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=227.59 Aligned_cols=167 Identities=19% Similarity=0.170 Sum_probs=140.3
Q ss_pred CCCEEEEecCCC-----HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc--------
Q 023070 8 DRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-------- 74 (287)
Q Consensus 8 ~~p~~~Qi~g~~-----~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-------- 74 (287)
..|+++||++++ +++|.++++.+...+|+|+||++||++. |..++++++.+.++++++++.
T Consensus 181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~ 254 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN 254 (415)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 457999999998 8999999999988899999999999963 677899999999999999875
Q ss_pred ------------cCCc-EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC---------cCCCCccccH----HH
Q 023070 75 ------------LNVP-VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------KDGKKFRADW----NA 128 (287)
Q Consensus 75 ------------~~~p-v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~---------~~~~~~~~~~----~~ 128 (287)
..+| |+||++.+++.++..++|+.++++|+|+|++|+++... ..+.+|++.| +.
T Consensus 255 ~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~ 334 (415)
T 3i65_A 255 IMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 334 (415)
T ss_dssp CSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred cccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence 2689 99999999988889999999999999999999988642 1223445554 78
Q ss_pred HHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 129 IKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 129 i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
++++++.+ ++|||++|||+|++|+.+++. .|||+|||||+++.+ ||++.++.
T Consensus 335 I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~-aGAd~VqIgra~l~~GP~~~~~i~ 389 (415)
T 3i65_A 335 ICEMYNYTNKQIPIIASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQIK 389 (415)
T ss_dssp HHHHHHHTTTCSCEEECSSCCSHHHHHHHHH-HTEEEEEESHHHHHHGGGHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHhcCHHHHHHHH
Confidence 99999988 799999999999999999998 699999999999876 99998775
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=230.48 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=140.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccc-cCChHHHHHHHHHHhhcc------CCcEEEEe
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL------NVPVSCKI 83 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l-~~~~~~~~~iv~~v~~~~------~~pv~vKi 83 (287)
++|++||+.+ ++|||+||||++| |..|.|+|.||+++ ++|++++.+|+++|++++ ++||++|+
T Consensus 170 ~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRi 249 (419)
T 3l5a_A 170 QQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRA 249 (419)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEec
Confidence 7899999865 6799999999887 99999999999999 999999999999999877 68999999
Q ss_pred cC--------CCChhhHHHHHHHHHH-cCCCEEEEeccCCCCc---CCCCcc-ccHHHHHHHHhhC--CCcEEEecCCCC
Q 023070 84 RV--------FPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEK---DGKKFR-ADWNAIKAVKNAL--RIPVLANGNVRH 148 (287)
Q Consensus 84 R~--------g~~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~---~~~~~~-~~~~~i~~i~~~~--~ipVi~nGgI~s 148 (287)
+. |++.+++.++++.+++ +|+|+|+||+++.... ....++ .+++.++.+++.+ ++|||++|||+|
T Consensus 250 s~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t 329 (419)
T 3l5a_A 250 TPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINS 329 (419)
T ss_dssp CSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCS
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCC
Confidence 98 6678899999999999 9999999998875211 111122 3677888899887 699999999999
Q ss_pred HHHHHHHHHhcCccEEEEehhhhhCccchhchhhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~ 183 (287)
+++++++++. ||+|++||+++.||+|+.+++..
T Consensus 330 ~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki~~G 362 (419)
T 3l5a_A 330 PESALDALQH--ADMVGMSSPFVTEPDFVHKLAEQ 362 (419)
T ss_dssp HHHHHHHGGG--CSEEEESTHHHHCTTHHHHHHTT
T ss_pred HHHHHHHHHh--CCcHHHHHHHHHCcHHHHHHHcC
Confidence 9999999996 99999999999999999988753
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=225.07 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=144.9
Q ss_pred CCCEEEEecCCC-----HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc--------
Q 023070 8 DRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-------- 74 (287)
Q Consensus 8 ~~p~~~Qi~g~~-----~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-------- 74 (287)
..|+++||+|++ +++|+++++.+..++|+||||++||+++ |...+++++.+.+|+++|++.
T Consensus 179 ~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~~~~~~~~~~~ 252 (443)
T 1tv5_A 179 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN 252 (443)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred CceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 468999999999 9999999998888999999999999963 677888999999999999753
Q ss_pred ------------------------------------------cCCc-EEEEecCCCChhhHHHHHHHHHHcCCCEEEEec
Q 023070 75 ------------------------------------------LNVP-VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG 111 (287)
Q Consensus 75 ------------------------------------------~~~p-v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~ 111 (287)
.++| |+||++.+++.++..++|+.++++|+|+|++|+
T Consensus 253 ~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~n 332 (443)
T 1tv5_A 253 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 332 (443)
T ss_dssp -----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3678 999999998888899999999999999999999
Q ss_pred cCCCCc---------CCCCccc----cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Ccc
Q 023070 112 RTRDEK---------DGKKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPA 175 (287)
Q Consensus 112 rt~~~~---------~~~~~~~----~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~ 175 (287)
++.... .+.+|++ .++.++++++.+ ++|||++|||.|++|+.+++. .|||+||+||+++. +||
T Consensus 333 tt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~-aGAd~Vqigrall~~gP~ 411 (443)
T 1tv5_A 333 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMK 411 (443)
T ss_dssp CBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-TTEEEEEESHHHHHHGGG
T ss_pred CCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHhcChH
Confidence 876321 1122332 468899999998 899999999999999999998 58999999999875 999
Q ss_pred chhchh
Q 023070 176 LFAGFR 181 (287)
Q Consensus 176 lf~~~~ 181 (287)
++.++.
T Consensus 412 l~~~i~ 417 (443)
T 1tv5_A 412 SAVQIK 417 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998775
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=218.66 Aligned_cols=169 Identities=18% Similarity=0.276 Sum_probs=144.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHc-CCCC---EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVE-PYCD---YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d---~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
.+.|+++||+|+++++|.++|+.++ .|+| +|+||++||+. .+ |..+..+++.+.++++++++.+++||++|
T Consensus 92 ~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g----~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK 166 (314)
T 2e6f_A 92 SKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PG----KPQVAYDFEAMRTYLQQVSLAYGLPFGVK 166 (314)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TT----CCCGGGSHHHHHHHHHHHHHHHCSCEEEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CC----chhhcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999999999999775 4899 99999999996 11 45666789999999999999889999999
Q ss_pred ecCCCChhhHHHHHHHHHHcC-CCEEEEeccCC-----C---C---------cCCCCc----cccHHHHHHHHhhC-CCc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR-----D---E---------KDGKKF----RADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G-~~~I~vh~rt~-----~---~---------~~~~~~----~~~~~~i~~i~~~~-~ip 139 (287)
++.+++.++..++++.++++| +++|++|+++. + . ..+.++ +..|+.++++++.+ ++|
T Consensus 167 ~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ip 246 (314)
T 2e6f_A 167 MPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKL 246 (314)
T ss_dssp ECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSE
T ss_pred ECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCC
Confidence 999888788889999999999 99999998761 1 0 001112 23478999999998 999
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
||++|||+|++|+.+++. .|||+||+||+++. +||++.++.
T Consensus 247 vi~~GGI~~~~da~~~l~-~GAd~V~ig~~~l~~~p~~~~~i~ 288 (314)
T 2e6f_A 247 VFGCGGVYSGEDAFLHIL-AGASMVQVGTALQEEGPGIFTRLE 288 (314)
T ss_dssp EEEESSCCSHHHHHHHHH-HTCSSEEECHHHHHHCTTHHHHHH
T ss_pred EEEECCCCCHHHHHHHHH-cCCCEEEEchhhHhcCcHHHHHHH
Confidence 999999999999999997 58999999999996 999998775
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=221.75 Aligned_cols=163 Identities=15% Similarity=0.197 Sum_probs=141.1
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g- 86 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|.||+++++|++++.+++++|++.+ ++||.+|++..
T Consensus 157 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~ 236 (363)
T 3l5l_A 157 KQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLE 236 (363)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchh
Confidence 47899999865 569999999965 899999999999999999999999999999998 58999999873
Q ss_pred ------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
++.+++.++++.+++.|+++|+||+++...... .....+++.++.+++.+++||+++|||+|++++.++++.
T Consensus 237 ~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~ 316 (363)
T 3l5l_A 237 YDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQA 316 (363)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHC
Confidence 456688999999999999999999764332111 111257889999999999999999999999999999997
Q ss_pred cCccEEEEehhhhhCccchhchhh
Q 023070 159 TGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++||+|++||+++.||+|+.++..
T Consensus 317 G~aD~V~iGR~~lanPdl~~k~~~ 340 (363)
T 3l5l_A 317 NQLDLVSVGRAHLADPHWAYFAAK 340 (363)
T ss_dssp TSCSEEECCHHHHHCTTHHHHHHH
T ss_pred CCccEEEecHHHHhCchHHHHHHH
Confidence 669999999999999999998874
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=219.36 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=134.0
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP- 87 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~- 87 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|.||+++++|++++.+++++|+++++ .||++|++...
T Consensus 152 i~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~ 231 (362)
T 4ab4_A 152 VEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRAD 231 (362)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccc
Confidence 47899999855 5799999999988 999999999999999999999999999999884 39999999742
Q ss_pred --------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 --------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 --------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+.+++.++++.++++|+++|+||+++. + + +.++.+++.+++|||++||| |+++++++++.+
T Consensus 232 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~----~---~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g 300 (362)
T 4ab4_A 232 AHDMGDADRAETFTYVARELGKRGIAFICSREREA----D---D---SIGPLIKEAFGGPYIVNERF-DKASANAALASG 300 (362)
T ss_dssp SSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC----T---T---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT
T ss_pred ccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC----C---H---HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC
Confidence 134678999999999999999998861 1 1 34678888889999999999 999999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+|++||+++.||||+.+++.
T Consensus 301 ~aD~V~iGR~~lanPdl~~k~~~ 323 (362)
T 4ab4_A 301 KADAVAFGVPFIANPDLPARLAA 323 (362)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHT
T ss_pred CccEEEECHHhHhCcHHHHHHHc
Confidence 79999999999999999998875
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=234.80 Aligned_cols=162 Identities=12% Similarity=0.165 Sum_probs=142.6
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+||||++| |..|.|+|.||++++++++++.+++++|++.+ ++||++|++.
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 7999999865 6799999999876 99999999999999999999999999999988 7999999985
Q ss_pred ---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC----CCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 86 ---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD----GKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 ---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~----~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
|++.+++.++++.++++|+++|++|+++.++.. ...+ ...++.++++++.+++||+++|||.|++++.++++
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~ 300 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILS 300 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 577788999999999999999999987654321 1111 23468899999999999999999999999999999
Q ss_pred hcCccEEEEehhhhhCccchhchhh
Q 023070 158 ETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.++||+|++||+++.||+|+.+++.
T Consensus 301 ~g~aD~V~~gR~~l~~P~l~~k~~~ 325 (671)
T 1ps9_A 301 RGDADMVSMARPFLADAELLSKAQS 325 (671)
T ss_dssp TTSCSEEEESTHHHHCTTHHHHHHT
T ss_pred cCCCCEEEeCHHHHhCcHHHHHHHc
Confidence 8679999999999999999998875
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=237.45 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=141.4
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|+||+++++|++++.+|+++|++++ ++||++|++.
T Consensus 148 i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 148 QQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 38999999965 5799999999998 99999999999999999999999999999998 7999999985
Q ss_pred -----CCC-hhhHHHHHHHHHHcCCCEEEEeccCC---CC---cCCC-CccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 86 -----FPN-LQDTIKYAKMLEDAGCSLLAVHGRTR---DE---KDGK-KFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 86 -----g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~---~~---~~~~-~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
|++ .+++.++++.+++ |+|+|.||.++. .. ...+ +...+++.++.+++.+++|||++|||.|++++
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a 306 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKM 306 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHH
T ss_pred CcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHH
Confidence 455 5788999999988 799999998752 10 0111 11236889999999999999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhchhhh
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGFRTA 183 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~ 183 (287)
.++++.++||+||+||+++.||||+.+++..
T Consensus 307 ~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g 337 (729)
T 1o94_A 307 IEIVTKGYADIIGCARPSIADPFLPQKVEQG 337 (729)
T ss_dssp HHHHHTTSCSBEEESHHHHHCTTHHHHHHTT
T ss_pred HHHHHCCCCCEEEeCchhhcCchHHHHHHcC
Confidence 9999987799999999999999999988753
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-27 Score=217.61 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=134.0
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP- 87 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g~- 87 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|.||+++++|++++.+++++|++.++. ||++|++...
T Consensus 160 i~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~ 239 (361)
T 3gka_A 160 VAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD 239 (361)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc
Confidence 47899999865 5799999999988 9999999999999999999999999999998843 9999999731
Q ss_pred --------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 --------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 --------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+.+++.++++.++++|+++|+||+++. . + +.++.+++.+++|||++||| |+++++++++.+
T Consensus 240 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~----~---~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G 308 (361)
T 3gka_A 240 AHTMGDSDPAATFGHVARELGRRRIAFLFARESFG----G---D---AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAG 308 (361)
T ss_dssp SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS----T---T---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC----C---H---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcC
Confidence 134678999999999999999998761 1 1 34678888889999999999 999999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+|++||+++.||||+.+++.
T Consensus 309 ~aD~V~iGR~~ladPdl~~k~~~ 331 (361)
T 3gka_A 309 QADAVAWGKLFIANPDLPRRFKL 331 (361)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHH
T ss_pred CccEEEECHHhHhCcHHHHHHHh
Confidence 79999999999999999998875
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=209.21 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=140.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc--CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~--~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++||+|++++++.++++.++ .|+|+|+||++||+.+.+ |..+..+++++.++++++++.+++||++|++.
T Consensus 98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g----~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~ 173 (311)
T 1ep3_A 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG----GQAFGTDPEVAAALVKACKAVSKVPLYVKLSP 173 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT----TEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc----hhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 789999999999999999999876 799999999999996533 45556799999999999999889999999997
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe---------ccCCCCc-----CCCCcccc----HHHHHHHHhhCCCcEEEecCCC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH---------GRTRDEK-----DGKKFRAD----WNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh---------~rt~~~~-----~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
++ .+..++++.++++|+|+|++. .++.... .++.++.. ++.++++++.+++|||++|||+
T Consensus 174 ~~--~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~ 251 (311)
T 1ep3_A 174 NV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVA 251 (311)
T ss_dssp CS--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCC
T ss_pred Ch--HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 65 356788999999999999994 3333210 11223333 4788899998999999999999
Q ss_pred CHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|++|+.++++ .|||+|++||+++.+|+++.++.
T Consensus 252 ~~~d~~~~l~-~GAd~V~vg~~~l~~p~~~~~i~ 284 (311)
T 1ep3_A 252 NAQDVLEMYM-AGASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp SHHHHHHHHH-HTCSEEEECTHHHHCTTHHHHHH
T ss_pred CHHHHHHHHH-cCCCEEEECHHHHcCcHHHHHHH
Confidence 9999999998 58999999999999999988764
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=232.57 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=138.6
Q ss_pred HHHHHHHHHH-cCCCCEEEEecc----------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 21 EILLNAARRV-EPYCDYVDINLG----------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~g----------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
++|++||+.+ ++|||+||||++ ||..|.|+|.||+++++|++++.+|+++|++.+ ++||.+|+..
T Consensus 156 ~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~ 235 (690)
T 3k30_A 156 RWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEE 235 (690)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 8999999966 469999999754 677899999999999999999999999999998 5788888854
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEeccCCCC----cCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~----~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
|++.+++.++++.+++ |+|+|+||+++... ....+...+++.++.+++.+++|||++|||+++++++++++
T Consensus 236 ~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~ 314 (690)
T 3k30_A 236 EIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIK 314 (690)
T ss_dssp CSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHH
Confidence 5667889999999998 89999999875321 01112235678899999999999999999999999999999
Q ss_pred hcCccEEEEehhhhhCccchhchhh
Q 023070 158 ETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++||+||+||+++.||||+.+++.
T Consensus 315 ~g~~d~v~~gR~~~~~P~~~~~~~~ 339 (690)
T 3k30_A 315 AGILDLIGAARPSIADPFLPNKIRD 339 (690)
T ss_dssp TTSCSEEEESHHHHHCTTHHHHHHT
T ss_pred CCCcceEEEcHHhHhCccHHHHHHc
Confidence 8789999999999999999999875
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=209.81 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=136.9
Q ss_pred CCHHHHHHHHHHH--cCCCCEEEEeccC---------Chhhhh-cCcccc-cccCChHHHHHHHHHHhhccC-CcEEEEe
Q 023070 18 NDPEILLNAARRV--EPYCDYVDINLGC---------PQRIAR-RGNYGA-FLMDNLPLVKSLVEKLALNLN-VPVSCKI 83 (287)
Q Consensus 18 ~~~~~~~~aA~~~--~~g~d~IdiN~gc---------P~~~~~-~~~~G~-~l~~~~~~~~~iv~~v~~~~~-~pv~vKi 83 (287)
.-.++|++||+.+ ++|||+||||++| |..|.| +|.||+ +++++++++.+++++|+++++ .||.+|+
T Consensus 171 ~~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRi 250 (379)
T 3aty_A 171 GIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRI 250 (379)
T ss_dssp THHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4567889999854 5699999999875 999999 999999 999999999999999999885 4899999
Q ss_pred cCC---------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 023070 84 RVF---------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 84 R~g---------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~ 154 (287)
+.. ++.+++.++++.+++.|+++|++|+++... ... ..+ ++.+++.+++|||++||| |++++.+
T Consensus 251 s~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-~~~----~~~-~~~ir~~~~iPvi~~G~i-t~~~a~~ 323 (379)
T 3aty_A 251 SPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN-QQI----GDV-VAWVRGSYSGVKISNLRY-DFEEADQ 323 (379)
T ss_dssp CTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS-CCC----CCH-HHHHHTTCCSCEEEESSC-CHHHHHH
T ss_pred CcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC-CCc----cHH-HHHHHHHCCCcEEEECCC-CHHHHHH
Confidence 883 234578899999999999999999876432 111 226 889999999999999999 9999999
Q ss_pred HHHhcCccEEEEehhhhhCccchhchhh
Q 023070 155 CLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++.++||+||+||+++.||+|+.+++.
T Consensus 324 ~l~~g~aD~V~igR~~l~~P~l~~k~~~ 351 (379)
T 3aty_A 324 QIREGKVDAVAFGAKFIANPDLVERAQQ 351 (379)
T ss_dssp HHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred HHHcCCCeEEEecHHHHhCcHHHHHHHc
Confidence 9998779999999999999999998874
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=209.62 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=133.4
Q ss_pred HH-HHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC-
Q 023070 21 EI-LLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP- 87 (287)
Q Consensus 21 ~~-~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~- 87 (287)
++ |++||+.+ ++|||+||||++| |..|.|+|.||+++++|++++.+|+++|++.++ .||++|++...
T Consensus 167 ~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~ 246 (407)
T 3tjl_A 167 YEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWAT 246 (407)
T ss_dssp HTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccc
Confidence 56 99999865 5799999999999 999999999999999999999999999999885 48999999732
Q ss_pred --------C----hhhHHHHHHHH---HHcC--CCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH
Q 023070 88 --------N----LQDTIKYAKML---EDAG--CSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 149 (287)
Q Consensus 88 --------~----~~~~~~~a~~l---~~~G--~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~ 149 (287)
+ .++..++++.+ ++.| +++|+|| +|+..+.... ...+|+.+..+++..++|||+||||.+.
T Consensus 247 ~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~~-~~~~~~~~~~ir~~~~~PvI~~Ggi~~~ 325 (407)
T 3tjl_A 247 FQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVS-EEDQAGDNEFVSKIWKGVILKAGNYSYD 325 (407)
T ss_dssp GGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEECC-GGGCCCCSHHHHHHCCSEEEEESCGGGG
T ss_pred cCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcCC-ccchhHHHHHHHHHhCCCEEecCCCCCH
Confidence 2 23467899999 8889 9999998 6654332111 1123455677888888999999999999
Q ss_pred HHHHHHHHh---cCccEEEEehhhhhCccchhchhh
Q 023070 150 EDVQKCLEE---TGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 150 ~da~~~l~~---~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++.++++. ++||+||+||+++.||||+.+++.
T Consensus 326 ~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri~~ 361 (407)
T 3tjl_A 326 APEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRD 361 (407)
T ss_dssp TTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHhhccCCCeEEEeChhhhhCchHHHHHHc
Confidence 888888876 789999999999999999998875
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=220.81 Aligned_cols=168 Identities=18% Similarity=0.309 Sum_probs=138.6
Q ss_pred CCCEEEEe-cCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQF-CANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi-~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++|+ +|+++++|.++++.+ +.|+|+|+||++||+. .+.+++|++++++++++.++++++++.+++||++|++.
T Consensus 634 ~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~ 712 (1025)
T 1gte_A 634 DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP 712 (1025)
T ss_dssp TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCC
Confidence 57888887 688999999999977 5699999999999998 55677999999999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe----------------------ccCCCCcCCCCccccH----HHHHHHHhhC-CC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH----------------------GRTRDEKDGKKFRADW----NAIKAVKNAL-RI 138 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh----------------------~rt~~~~~~~~~~~~~----~~i~~i~~~~-~i 138 (287)
+. .+..++++.++++|+++|+++ +|+..+ ++++++.| +.++++++.+ ++
T Consensus 713 ~~--~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~g--g~sg~~~~~~~~~~v~~v~~~~~~i 788 (1025)
T 1gte_A 713 NV--TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYG--GVSGTAIRPIALRAVTTIARALPGF 788 (1025)
T ss_dssp CS--SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCE--EEESGGGHHHHHHHHHHHHHHSTTC
T ss_pred Ch--HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCC--CCCcccchhHHHHHHHHHHHHcCCC
Confidence 43 478899999999999999993 333221 23345554 6789999988 89
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
|||++|||+|++|+.+++. .|||+||+||+++. +|.++.++.
T Consensus 789 pvi~~GGI~s~~da~~~l~-~Ga~~v~vg~~~l~~~~~~~~~~~ 831 (1025)
T 1gte_A 789 PILATGGIDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDYC 831 (1025)
T ss_dssp CEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHHH
T ss_pred CEEEecCcCCHHHHHHHHH-cCCCEEEEeeccccCCccHHHHHH
Confidence 9999999999999999998 69999999999998 555665443
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=177.62 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=129.2
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCC--
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g-- 86 (287)
.++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ -+|.+|+...
T Consensus 151 i~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~ 230 (358)
T 4a3u_A 151 LDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGE 230 (358)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSC
T ss_pred HHHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcc
Confidence 36899999965 5799999999 459999999999999999999999999999999883 4588888752
Q ss_pred ----C---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 ----P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ----~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
. +.+....+++.+.+.|++++.++.......... .....+.+.+++....||++ ||+.|++.++++|+++
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~a~~ik~~~~~~v~~-~g~~~~~~ae~~l~~G 307 (358)
T 4a3u_A 231 IQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGK--TDQPKLSPEIRKVFKPPLVL-NQDYTFETAQAALDSG 307 (358)
T ss_dssp BTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSSSB--CSSCCCHHHHHHHCCSCEEE-ESSCCHHHHHHHHHHT
T ss_pred cCCCcccchHHHHHHHHHhhhccCccccccccccccCcccc--cccHHHHHHHHHhcCCcEEE-eCCCCHHHHHHHHHcC
Confidence 1 223456778889999999999986654432221 12223456777777777775 6678999999999987
Q ss_pred CccEEEEehhhhhCccchhchhhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRTA 183 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~ 183 (287)
.||.|.+||++++||+|.++++..
T Consensus 308 ~aD~V~~gR~~ladPdlp~k~~~g 331 (358)
T 4a3u_A 308 VADAISFGRPFIGNPDLPRRFFEK 331 (358)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHHT
T ss_pred CceEeHhhHHHHhChhHHHHHHhC
Confidence 799999999999999999998753
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=172.52 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=124.4
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc----CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 6 PEDRPLFVQFCANDPEILLNAARRVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~~~----~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
..+.|+++||+|++++++.+.++.+. .++|+|+||++||+.. .|..+..+++.+.++++++++.+..|+.+
T Consensus 124 ~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~~~~~~pv~v 198 (354)
T 3tjx_A 124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVSEVYPHSFGV 198 (354)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHHCCSCEEE
T ss_pred cCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHHHHhhccccc
Confidence 44789999999999999988877442 3789999999999853 25678889999999999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcC-CCEEEE----------eccCCC-------CcCCCCccccHH----HHHHHHhhC-CC
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAG-CSLLAV----------HGRTRD-------EKDGKKFRADWN----AIKAVKNAL-RI 138 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G-~~~I~v----------h~rt~~-------~~~~~~~~~~~~----~i~~i~~~~-~i 138 (287)
|++..++.......+..+.+.+ ++.++. ..++.. +..+.+|++.|+ .++++++.+ ++
T Consensus 199 K~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~ 278 (354)
T 3tjx_A 199 KMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK 278 (354)
T ss_dssp EECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTS
T ss_pred ccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCC
Confidence 9999887666556666666554 333322 111111 112234566654 455665554 69
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 181 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~ 181 (287)
|||++|||.|.+|+.+++. .|||+|||||++ +.+|+++.++.
T Consensus 279 pIIg~GGI~s~~Da~e~i~-aGAs~Vqv~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 279 LIFGCGGVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFERLT 321 (354)
T ss_dssp EEEEESSCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHH
T ss_pred cEEEeCCcCCHHHHHHHHH-cCCCEEEEChhhhhcCchHHHHHH
Confidence 9999999999999999998 699999999996 58999998774
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=167.30 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=123.2
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHc-CCCCEEEEeccCChh------------------hhhc----Ccccccc---c--
Q 023070 8 DRPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQR------------------IARR----GNYGAFL---M-- 58 (287)
Q Consensus 8 ~~p~~~Qi~g-~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~------------------~~~~----~~~G~~l---~-- 58 (287)
+.|+.+||++ +|++...++++.++ .|+++|+||++||.. +... ...|+.+ +
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 6799999988 89999999998765 599999999999982 2210 3346655 3
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 136 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-- 136 (287)
.++.+..++++++++.+++||++|.- .+.+.++.++++|+|+|+|++....+ ...+++.|+.+.++++.+
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~v------~~~e~a~~a~~~Gad~I~vs~~ggr~--~~~g~~~~~~l~~v~~~v~~ 283 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKGI------QHPEDADMAIKRGASGIWVSNHGARQ--LYEAPGSFDTLPAIAERVNK 283 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTS--CSSCCCHHHHHHHHHHHHTT
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEcC------CCHHHHHHHHHcCCCEEEEcCCCcCC--CCCCCChHHHHHHHHHHhCC
Confidence 37788889999999999999999942 23567889999999999995543222 234578899999999887
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++|||++|||++++|+.++|. .|||+|||||+++
T Consensus 284 ~ipVia~GGI~~g~D~~kala-lGAd~V~iGr~~l 317 (368)
T 2nli_A 284 RVPIVFDSGVRRGEHVAKALA-SGADVVALGRPVL 317 (368)
T ss_dssp SSCEEECSSCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 699999999999999999999 6999999999655
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=170.66 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=119.6
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++++ ..||.+|+....
T Consensus 172 ~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~ 251 (400)
T 4gbu_A 172 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF 251 (400)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 5899999965 5799999999 56999999999999999999999999999999988 358999987521
Q ss_pred ----C------hhhHHHHHHHHHHcC-----CCEEEEeccCCCCcCC--CCccccHHHHHHHHhhCCCcEEEecCCCCHH
Q 023070 88 ----N------LQDTIKYAKMLEDAG-----CSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHME 150 (287)
Q Consensus 88 ----~------~~~~~~~a~~l~~~G-----~~~I~vh~rt~~~~~~--~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~ 150 (287)
+ ..+..+++..++..+ .+++.+.......... ..+.........+++.+++|||++|||.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~ 331 (400)
T 4gbu_A 252 NSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHP 331 (400)
T ss_dssp TTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHCCSCEEEESSCTTCH
T ss_pred CCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHhCCCEEEeCCCCChH
Confidence 1 123445566665443 4455554322111100 0001111123346777899999999999877
Q ss_pred HHHHHHHhcCccEEEEehhhhhCccchhchhhh
Q 023070 151 DVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183 (287)
Q Consensus 151 da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~ 183 (287)
++.+.+...+||.|.+||++++||+|.++++..
T Consensus 332 ~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~G 364 (400)
T 4gbu_A 332 EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG 364 (400)
T ss_dssp HHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred HHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHcC
Confidence 877777668999999999999999999998763
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=159.56 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=114.4
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHH--HHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFC-ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPL--VKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~--~~~iv~~v~~~~~~pv~vKi 83 (287)
.+.|+++|+. |.+++.+.++++. .|+|+|+||++||+...... | ++++ +.++++++++.+++||.+|+
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~--~gad~i~i~~~~~~~~~~~~--~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~ 185 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEM--IGANALQIHLNVIQEIVMPE--G-----DRSFSGALKRIEQICSRVSVPVIVKE 185 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHH--TTCSEEEEEECTTTTC---------------CTTHHHHHHHHHHHCSSCEEEEE
T ss_pred CCceeEEeecCCCCHHHHHHHHHh--cCCCeEEecccchhhhcCCC--C-----CcchHHHHHHHHHHHHHcCCCEEEEe
Confidence 4689999999 8899887765443 48999999999998543321 1 3443 77899999988899999998
Q ss_pred -cCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCC-----cC-------CCCccccHHHHHHHHhhC-CCcEEEecCCC
Q 023070 84 -RVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDE-----KD-------GKKFRADWNAIKAVKNAL-RIPVLANGNVR 147 (287)
Q Consensus 84 -R~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~-----~~-------~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~ 147 (287)
..+.+ .+.++.+.++|+|+|+| ||+|... +. ...+.+.++.++++++.+ ++|||++|||+
T Consensus 186 ~~~~~~----~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~ 261 (349)
T 1p0k_A 186 VGFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQ 261 (349)
T ss_dssp ESSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCC
T ss_pred cCCCCC----HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCC
Confidence 44444 45688899999999999 7665210 10 123456788899998886 89999999999
Q ss_pred CHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
|++|+.+++. .|||+|++||+++..+
T Consensus 262 ~~~d~~k~l~-~GAd~V~iG~~~l~~~ 287 (349)
T 1p0k_A 262 DALDVAKAIA-LGASCTGMAGHFLKAL 287 (349)
T ss_dssp SHHHHHHHHH-TTCSEEEECHHHHHHH
T ss_pred CHHHHHHHHH-cCCCEEEEcHHHHHHH
Confidence 9999999998 5999999999887654
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=160.70 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=121.0
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHc-CCCCEEEEeccCChh---------------hh-----h------cC----ccc
Q 023070 7 EDRPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQR---------------IA-----R------RG----NYG 54 (287)
Q Consensus 7 ~~~p~~~Qi~g-~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~---------------~~-----~------~~----~~G 54 (287)
.+.|+.+||++ .|++...+.++.++ .|+++|+||++||.. .. . .. +.|
T Consensus 145 ~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g 224 (392)
T 2nzl_A 145 PEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDD 224 (392)
T ss_dssp TTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC----------------
T ss_pred CCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCc
Confidence 36799999987 79999999888775 599999999999984 11 0 00 112
Q ss_pred c---cccC---ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHH
Q 023070 55 A---FLMD---NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 128 (287)
Q Consensus 55 ~---~l~~---~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~ 128 (287)
+ .++. +|++..+.++++++.+++||.+|.- ...+.++.++++|+|+|+|+++...+ ...+++.|+.
T Consensus 225 ~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv------~~~e~A~~a~~aGad~I~vs~~ggr~--~~~g~~~~~~ 296 (392)
T 2nzl_A 225 SGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI------LRGDDAREAVKHGLNGILVSNHGARQ--LDGVPATIDV 296 (392)
T ss_dssp -CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE------CCHHHHHHHHHTTCCEEEECCGGGTS--STTCCCHHHH
T ss_pred chHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec------CCHHHHHHHHHcCCCEEEeCCCCCCc--CCCCcChHHH
Confidence 2 2444 7777888899999999999999942 12566889999999999996554322 2334788999
Q ss_pred HHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 129 IKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 129 i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.++++.+ ++|||++|||++++|+.++|. .|||+||+||+++.
T Consensus 297 l~~v~~av~~~ipVia~GGI~~g~Dv~kala-lGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 297 LPEIVEAVEGKVEVFLDGGVRKGTDVLKALA-LGAKAVFVGRPIVW 341 (392)
T ss_dssp HHHHHHHHTTSSEEEECSSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHcCCCCEEEEECCCCCHHHHHHHHH-hCCCeeEECHHHHH
Confidence 99999877 599999999999999999999 69999999997664
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=152.30 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=118.2
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCC-----hHHHHHHHHHHh-hccCCcEEEE
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN-----LPLVKSLVEKLA-LNLNVPVSCK 82 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~-----~~~~~~iv~~v~-~~~~~pv~vK 82 (287)
.|+-+|++|.-.. . ++.+++ .|+|.|-+ |++++++ |+++.++++++. +.+-+++.+|
T Consensus 75 ~~~pv~vgGGir~-~-~~~~~l-~Ga~~Vii--------------gs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k 137 (260)
T 2agk_A 75 SPQFLQVGGGIND-T-NCLEWL-KWASKVIV--------------TSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCR 137 (260)
T ss_dssp STTTSEEESSCCT-T-THHHHT-TTCSCEEE--------------CGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEE
T ss_pred CCceEEEeCCCCH-H-HHHHHh-cCCCEEEE--------------CcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEee
Confidence 3556788887763 4 777777 88887765 5788888 999999999997 5444555555
Q ss_pred ec---------CCCChh---hHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC----CCcEEEecC
Q 023070 83 IR---------VFPNLQ---DTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIPVLANGN 145 (287)
Q Consensus 83 iR---------~g~~~~---~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~----~ipVi~nGg 145 (287)
.+ .||... ++. ++++.+++. ++.|++|+++++++..+ .||+.++++++.+ ++|||++||
T Consensus 138 ~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~~G---~d~eli~~l~~~~~~~~~iPVIasGG 213 (260)
T 2agk_A 138 KTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLCGG---IDELLVSKLFEWTKDYDDLKIVYAGG 213 (260)
T ss_dssp EEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC-------CC---CCHHHHHHHHHHHTTCSSCEEEEESC
T ss_pred ecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCcCC---CCHHHHHHHHHhhcccCCceEEEeCC
Confidence 32 156432 556 999999999 99999999999876543 5999999999998 999999999
Q ss_pred CCCHHHHHHHHHhc-CccEEEEehhh--hhCc-cchhchh
Q 023070 146 VRHMEDVQKCLEET-GCEGVLSAESL--LENP-ALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~-gad~VmiGR~~--l~nP-~lf~~~~ 181 (287)
|.|++|+.++++.+ |||+||+||++ +.+| |.|.++.
T Consensus 214 i~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~ 253 (260)
T 2agk_A 214 AKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCC 253 (260)
T ss_dssp CCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHH
Confidence 99999999999877 99999999997 9999 9988764
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=152.11 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=119.3
Q ss_pred CCEEEEec-CCCHHHHHHHHHHHc-CCCCEEEEeccCChh--------------------hhhc-------Ccccccc--
Q 023070 9 RPLFVQFC-ANDPEILLNAARRVE-PYCDYVDINLGCPQR--------------------IARR-------GNYGAFL-- 57 (287)
Q Consensus 9 ~p~~~Qi~-g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~--------------------~~~~-------~~~G~~l-- 57 (287)
.|..+||+ +.|++...+.++.++ .|++.|+||++||.. +... ...|+.+
T Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 202 (370)
T 1gox_A 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSS 202 (370)
T ss_dssp CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHH
T ss_pred CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHH
Confidence 78999996 889999888888665 589999999999974 1111 1234443
Q ss_pred ----cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 58 ----MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 58 ----~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+.++.+..+.++.+++.+++||.+|... + .+.++.+.++|+|+|+|.+....+ ...++++++.+.+++
T Consensus 203 ~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~--~----~e~a~~a~~~Gad~I~vs~~ggr~--~~~~~~~~~~l~~v~ 274 (370)
T 1gox_A 203 YVAGQIDRSLSWKDVAWLQTITSLPILVKGVI--T----AEDARLAVQHGAAGIIVSNHGARQ--LDYVPATIMALEEVV 274 (370)
T ss_dssp HHHHTBCTTCCHHHHHHHHHHCCSCEEEECCC--S----HHHHHHHHHTTCSEEEECCGGGTS--STTCCCHHHHHHHHH
T ss_pred HHHhhcCccchHHHHHHHHHHhCCCEEEEecC--C----HHHHHHHHHcCCCEEEECCCCCcc--CCCcccHHHHHHHHH
Confidence 4466666678999999899999999763 2 356788999999999994321111 223367899999999
Q ss_pred hhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 134 NAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 134 ~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+ ++|||++|||++++|+.+++. .|||+|||||+++.
T Consensus 275 ~~~~~~ipvia~GGI~~~~D~~k~l~-~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 275 KAAQGRIPVFLDGGVRRGTDVFKALA-LGAAGVFIGRPVVF 314 (370)
T ss_dssp HHTTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred HHhCCCCEEEEECCCCCHHHHHHHHH-cCCCEEeecHHHHH
Confidence 987 799999999999999999998 69999999998774
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=157.74 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=121.8
Q ss_pred CCCCEEEEec-CCCHHHHHHHHHHHcC-CCCEEEEeccCCh-hh----hhc-----------------Ccccc--ccc--
Q 023070 7 EDRPLFVQFC-ANDPEILLNAARRVEP-YCDYVDINLGCPQ-RI----ARR-----------------GNYGA--FLM-- 58 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~-~~----~~~-----------------~~~G~--~l~-- 58 (287)
.+.|..+||+ +.|++.+.++++.++. |+++|.|++.||+ .+ .+. +.+++ .++
T Consensus 245 ~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~ 324 (511)
T 1kbi_A 245 DKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSK 324 (511)
T ss_dssp SSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBT
T ss_pred CCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhh
Confidence 4678999998 8999999999997764 9999999999998 11 111 11111 233
Q ss_pred -CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-
Q 023070 59 -DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 136 (287)
Q Consensus 59 -~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 136 (287)
.+|.+..++++++++.+++||++|.- . ..+.++.++++|+|+|+|++....+. ..+++.|+.+.++++.+
T Consensus 325 ~~d~~~~~~~i~~lr~~~~~PvivKgv---~---~~e~A~~a~~aGad~I~vs~hgG~~~--d~~~~~~~~l~~v~~~v~ 396 (511)
T 1kbi_A 325 FIDPSLTWKDIEELKKKTKLPIVIKGV---Q---RTEDVIKAAEIGVSGVVLSNHGGRQL--DFSRAPIEVLAETMPILE 396 (511)
T ss_dssp TBCTTCCHHHHHHHHHHCSSCEEEEEE---C---SHHHHHHHHHTTCSEEEECCTTTTSS--TTCCCHHHHHHHHHHHHH
T ss_pred ccChHhHHHHHHHHHHHhCCcEEEEeC---C---CHHHHHHHHHcCCCEEEEcCCCCccC--CCCCchHHHHHHHHHHHH
Confidence 57787888899999999999999932 1 15668899999999999944322222 22356788888888876
Q ss_pred ------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 137 ------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 137 ------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++|||++|||+++.|+.++|. .|||+|||||+++.
T Consensus 397 ~~~~~~~ipVia~GGI~~g~Dv~kaLa-lGAdaV~iGr~~l~ 437 (511)
T 1kbi_A 397 QRNLKDKLEVFVDGGVRRGTDVLKALC-LGAKGVGLGRPFLY 437 (511)
T ss_dssp TTTCBTTBEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred hhccCCCcEEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 799999999999999999999 69999999996663
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=159.67 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=130.8
Q ss_pred CCEEEEecCCCHHH----------HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCC
Q 023070 9 RPLFVQFCANDPEI----------LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNV 77 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~----------~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~ 77 (287)
.++-+|++|.-.+. +..+.++++.|+|.|.||.+| ..+..+-..++.++.+|+++.++.+...+ .+-+
T Consensus 326 ~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv 404 (555)
T 1jvn_A 326 VFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYGAQAVVI 404 (555)
T ss_dssp CCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEE
T ss_pred CCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHH-hhCchhhccccccccCHHHHHHHHHHhCCCcEEE
Confidence 46678888876442 344555778899999999988 33322222234468899999999998743 2212
Q ss_pred cEEEEe--------------------------------cCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc
Q 023070 78 PVSCKI--------------------------------RVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 122 (287)
Q Consensus 78 pv~vKi--------------------------------R~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~ 122 (287)
.+.+|. ..||.. .++.++++.+++.|++.|++|+++++++..+
T Consensus 405 ~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G-- 482 (555)
T 1jvn_A 405 SVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSG-- 482 (555)
T ss_dssp EECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSC--
T ss_pred EEEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCC--
Confidence 222221 124543 3578999999999999999999999876542
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||+.++++++.+++|||++|||.|++|+.++++.+|||+||+||+++.+||.|.+++.
T Consensus 483 -~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~ 541 (555)
T 1jvn_A 483 -YDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKE 541 (555)
T ss_dssp -CCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHH
T ss_pred -CCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHH
Confidence 69999999999999999999999999999999986799999999999999999998764
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=138.21 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=121.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc----CCc-----
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL----NVP----- 78 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~----~~p----- 78 (287)
+.|+++-.+=.+|+++.. .++.|+|.|-++ +.++.+|+.+.++++.+...+ +.+
T Consensus 74 ~ipv~v~ggi~~~~~~~~---~l~~Gad~V~lg--------------~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~ 136 (244)
T 2y88_A 74 DVQVELSGGIRDDESLAA---ALATGCARVNVG--------------TAALENPQWCARVIGEHGDQVAVGLDVQIIDGE 136 (244)
T ss_dssp SSEEEEESSCCSHHHHHH---HHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTE
T ss_pred CCcEEEECCCCCHHHHHH---HHHcCCCEEEEC--------------chHhhChHHHHHHHHHcCCCEEEEEeccccCCC
Confidence 457777666678776333 345688988774 556788999999999876433 222
Q ss_pred EEEEecCCCCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 79 VSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 79 v~vKiR~g~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
.+||+| +|.. .++.++++.+++.|++.|.+|+|++.+... ..+|+.++++++.+++||+++|||.+++|+.+++
T Consensus 137 ~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~---g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~ 212 (244)
T 2y88_A 137 HRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLG---GPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIA 212 (244)
T ss_dssp EEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTS---CCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHH
T ss_pred CEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccC---CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH
Confidence 357777 6632 267889999999999999999998875432 2589999999998999999999999999999999
Q ss_pred Hhc--CccEEEEehhhhhCccchhchh
Q 023070 157 EET--GCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 157 ~~~--gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+ |||+||+||+++.+|+.+.++.
T Consensus 213 ~~~~~Gad~v~vG~al~~~~~~~~~~~ 239 (244)
T 2y88_A 213 TLTHRGVEGAIVGKALYARRFTLPQAL 239 (244)
T ss_dssp TTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred hhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence 855 9999999999999999988764
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=136.98 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=111.1
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEE--EeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe---
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVD--INLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI--- 83 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~Id--iN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi--- 83 (287)
.|+.+|+.++.+... .+.++.|+|+|| +|+|| .+.+ +++.+.+.++++++.++ |+.+|+
T Consensus 62 ~P~g~~~~~~k~~~~---~~A~~~Gad~Id~viN~g~----~~~~--------~~~~~~~~i~~v~~a~~-pv~vKvi~e 125 (225)
T 1mzh_A 62 FPLGLNKTSVKVKEA---VEAVRDGAQELDIVWNLSA----FKSE--------KYDFVVEELKEIFRETP-SAVHKVIVE 125 (225)
T ss_dssp TTTCCSCHHHHHHHH---HHHHHTTCSEEEEECCHHH----HHTT--------CHHHHHHHHHHHHHTCT-TSEEEEECC
T ss_pred CCCCccchhhhHHHH---HHHHHcCCCEEEEEecHHH----HhcC--------ChHHHHHHHHHHHHHhc-CceEEEEEe
Confidence 455666655544443 234568999999 79998 2333 34677788999999888 999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+.+++.++..++++.++++|+|+|.. +| +. +++.++|+.++.+++.+ ++||+++|||+|++|+.++++ .||
T Consensus 126 ~~~l~~~~~~~~a~~a~eaGad~I~t--st--g~--~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~-aGA 198 (225)
T 1mzh_A 126 TPYLNEEEIKKAVEICIEAGADFIKT--ST--GF--APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE-AGA 198 (225)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCSEEEC--CC--SC--SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEE--CC--CC--CCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-hCc
Confidence 77788888899999999999999922 22 21 23457899999999876 799999999999999999998 699
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
|.|.++++ .+++.+++
T Consensus 199 ~~iG~s~~----~~i~~~~~ 214 (225)
T 1mzh_A 199 DRIGTSSG----ISIAEEFL 214 (225)
T ss_dssp SEEEESCH----HHHHHHHH
T ss_pred hHHHHccH----HHHHHHHH
Confidence 98777665 34555443
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=139.98 Aligned_cols=154 Identities=22% Similarity=0.190 Sum_probs=113.2
Q ss_pred CCCCEE-----EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 7 EDRPLF-----VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 7 ~~~p~~-----~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.+.|++ .|+++.+++.+.++++.+. +|++.+|..+.+.... + |. .+.+.+.++++++++ +++||++
T Consensus 116 ~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~--~~a~~i~~n~~~~~~~-~--~~---~~~~~~~~~i~~vr~-~~~Pv~v 186 (332)
T 1vcf_A 116 PKALLIANLGLAQLRRYGRDDLLRLVEMLE--ADALAFHVNPLQEAVQ-R--GD---TDFRGLVERLAELLP-LPFPVMV 186 (332)
T ss_dssp SSSCEEEEEEGGGGGTCCHHHHHHHHHHHT--CSEEEEECCHHHHHHT-T--SC---CCCTTHHHHHHHHCS-CSSCEEE
T ss_pred CCceeecccChhhhhccChHHHHHHHhhcC--CCceeeccchHHHHhc-C--CC---ccHHHHHHHHHHHHc-CCCCEEE
Confidence 478886 7888899999999988664 5665555443333221 1 11 122336788999999 9999999
Q ss_pred E-ecCCCChhhHHHHHHHHHHcCCCEEEE--eccC--------CCC------cCCCCccccHHHHHHHHhhC-CCcEEEe
Q 023070 82 K-IRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRT--------RDE------KDGKKFRADWNAIKAVKNAL-RIPVLAN 143 (287)
Q Consensus 82 K-iR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt--------~~~------~~~~~~~~~~~~i~~i~~~~-~ipVi~n 143 (287)
| +..|++ .+.++.++++|+|+|+| ||++ +.+ .....+.+.++.+.++++.+ ++|||++
T Consensus 187 K~v~~g~~----~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~ 262 (332)
T 1vcf_A 187 KEVGHGLS----REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVAS 262 (332)
T ss_dssp ECSSSCCC----HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEE
T ss_pred EecCCCCC----HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEE
Confidence 9 544444 34578899999999999 6654 221 00223457788999999988 7999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
|||+|++|+.++|. .|||+||+||+++..+
T Consensus 263 GGI~~~~d~~kal~-~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 263 GGVYTGTDGAKALA-LGADLLAVARPLLRPA 292 (332)
T ss_dssp SSCCSHHHHHHHHH-HTCSEEEECGGGHHHH
T ss_pred CCCCCHHHHHHHHH-hCCChHhhhHHHHHHH
Confidence 99999999999998 5999999999877543
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=138.87 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=110.0
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+.+|++..+|+ +.+.++ ..+.|+|+|++|+|||.. +++.+++ .++||.+|+.
T Consensus 63 ~~p~gvnl~~~~~~-~~~~~~~a~~~g~d~V~~~~g~p~~--------------------~i~~l~~-~g~~v~~~v~-- 118 (332)
T 2z6i_A 63 DKPFGVNIMLLSPF-VEDIVDLVIEEGVKVVTTGAGNPSK--------------------YMERFHE-AGIIVIPVVP-- 118 (332)
T ss_dssp CSCEEEEECTTSTT-HHHHHHHHHHTTCSEEEECSSCGGG--------------------THHHHHH-TTCEEEEEES--
T ss_pred CCCEEEEecCCCCC-HHHHHHHHHHCCCCEEEECCCChHH--------------------HHHHHHH-cCCeEEEEeC--
Confidence 57999999997765 555555 456799999999999832 3455554 3789999872
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+.++.+++.|+|+|.++|+...+..+ ...+|+.++++++.+++||+++|||.|++++.+++. .|||+|++
T Consensus 119 -----~~~~a~~~~~~GaD~i~v~g~~~GG~~g--~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~-~GAdgV~v 190 (332)
T 2z6i_A 119 -----SVALAKRMEKIGADAVIAEGMEAGGHIG--KLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM-LGAEAVQV 190 (332)
T ss_dssp -----SHHHHHHHHHTTCSCEEEECTTSSEECC--SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-TTCSEEEE
T ss_pred -----CHHHHHHHHHcCCCEEEEECCCCCCCCC--CccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEe
Confidence 3456788899999999999874322111 246789999999999999999999999999999998 59999999
Q ss_pred ehhhhhCccch
Q 023070 167 AESLLENPALF 177 (287)
Q Consensus 167 GR~~l~nP~lf 177 (287)
||+++.+|...
T Consensus 191 Gs~~l~~~e~~ 201 (332)
T 2z6i_A 191 GTRFVVAKESN 201 (332)
T ss_dssp CHHHHTBTTCC
T ss_pred cHHHhcCcccc
Confidence 99999999654
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-15 Score=131.02 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=115.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE---e-
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK---I- 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK---i- 83 (287)
+.|+++-.+=.+|+++.+ .++.|+|.|-+ |+.++.+|+.+.++++.....+.+.+.++ +
T Consensus 75 ~ipv~v~ggI~~~~~~~~---~l~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~ 137 (244)
T 1vzw_A 75 DIKVELSGGIRDDDTLAA---ALATGCTRVNL--------------GTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLR 137 (244)
T ss_dssp SSEEEEESSCCSHHHHHH---HHHTTCSEEEE--------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEEC
T ss_pred CCcEEEECCcCCHHHHHH---HHHcCCCEEEE--------------CchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEE
Confidence 457777666678876333 34568898876 45567789999999888764444444444 1
Q ss_pred cCCCCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc--
Q 023070 84 RVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET-- 159 (287)
Q Consensus 84 R~g~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~-- 159 (287)
+.+|.. .+..++++.+++.|++.|.+|++++.+... ..+|+.++++++.+++||+++|||++++++.++++.+
T Consensus 138 ~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~---g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~ 214 (244)
T 1vzw_A 138 GRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ---GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPA 214 (244)
T ss_dssp CSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGG
T ss_pred EcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccC---CCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccC
Confidence 224532 167888999999999999999988765332 3689999999999999999999999999999999855
Q ss_pred CccEEEEehhhhhCccchhchh
Q 023070 160 GCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|||+|++||+++.+||.+.++.
T Consensus 215 Gadgv~vG~al~~~~~~~~~~~ 236 (244)
T 1vzw_A 215 GVEGAIVGKALYAKAFTLEEAL 236 (244)
T ss_dssp TEEEEEECHHHHTTSSCHHHHH
T ss_pred CCceeeeeHHHHcCCCCHHHHH
Confidence 9999999999999999887654
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=127.85 Aligned_cols=147 Identities=20% Similarity=0.326 Sum_probs=108.4
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+|..+ .++++ |++.+ +|+.+|-..-+||......+ |.+-|.+|+.+.+| ++++++||.-|.|.|.
T Consensus 14 vimdv--~~~eq----a~iae~aGa~av~~l~~~p~d~r~~g--Gv~Rm~dp~~I~~I----~~aVsIPVm~k~righ-- 79 (291)
T 3o07_A 14 VIMDV--VTPEQ----AKIAEKSGACAVMALESIPADMRKSG--KVCRMSDPKMIKDI----MNSVSIPVMAKVRIGH-- 79 (291)
T ss_dssp EEEEE--SSHHH----HHHHHHHTCSEEEECSSCHHHHHTTT--CCCCCCCHHHHHHH----HTTCSSCEEEEEETTC--
T ss_pred eeeec--CCHHH----HHHHHHhCchhhhhccCCCchhhhcC--CccccCCHHHHHHH----HHhCCCCeEEEEecCc--
Confidence 45555 34433 55554 49999999999999866544 78889999887665 5667999999999876
Q ss_pred hhHHHHHHHHHHcCCCEEEEecc-----------------------------------------CCCC------------
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGR-----------------------------------------TRDE------------ 116 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~r-----------------------------------------t~~~------------ 116 (287)
..-++.++++|+|+|.-+.+ |...
T Consensus 80 ---~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h 156 (291)
T 3o07_A 80 ---FVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKH 156 (291)
T ss_dssp ---HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHH
T ss_pred ---HHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHH
Confidence 33366777778877755321 1000
Q ss_pred ----------cCCC-----------CccccHHHHHHHHhhCCCcE--EEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 117 ----------KDGK-----------KFRADWNAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 117 ----------~~~~-----------~~~~~~~~i~~i~~~~~ipV--i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
..++ ...++|+.++++++.+++|| |+||||.|++|+.++++ +|||+||+||+++..
T Consensus 157 ~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le-~GaDGVmVGrAI~~s 235 (291)
T 3o07_A 157 IRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQ-LGCDGVFVGSGIFKS 235 (291)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHH-TTCSCEEECGGGGGS
T ss_pred HHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHH-hCCCEEEEchHHhCC
Confidence 0011 12478999999999999998 57999999999999996 799999999999874
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
|+
T Consensus 236 ~D 237 (291)
T 3o07_A 236 SN 237 (291)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-14 Score=123.08 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=115.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEE------
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVS------ 80 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~------ 80 (287)
+.|+++.=+=++++++.++. +.|+|+|-+ |..++.+|+.+.++.+.... .+-+.++
T Consensus 75 ~iPvi~~Ggi~~~~~~~~~~---~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g 137 (252)
T 1ka9_F 75 FIPLTVGGGVRSLEDARKLL---LSGADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWRGD 137 (252)
T ss_dssp CSCEEEESSCCSHHHHHHHH---HHTCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETT
T ss_pred CCCEEEECCcCCHHHHHHHH---HcCCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCC
Confidence 56777655446666544444 347888866 56677889999998888742 2223333
Q ss_pred ---EEecCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 023070 81 ---CKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 81 ---vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~ 154 (287)
+++ .+|.. .++.+.++.+++.|++.|.+|++++.+... ..+|+.++++++.+++||+++|||.+++|+.+
T Consensus 138 ~~~v~~-~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~ 213 (252)
T 1ka9_F 138 FPEVHV-AGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKE---GYDLRLTRMVAEAVGVPVIASGGAGRMEHFLE 213 (252)
T ss_dssp EEEEEE-TTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHH
T ss_pred CEEEEE-CCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCCcC---CCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 333 24542 356888999999999999999887765433 25899999999999999999999999999999
Q ss_pred HHHhcCccEEEEehhhhhCccchhchh
Q 023070 155 CLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+++ +|||+|++|++++.+||-+.++.
T Consensus 214 ~~~-~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 214 AFQ-AGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp HHH-TTCSEEEESHHHHTTSSCHHHHH
T ss_pred HHH-CCCHHHHHHHHHHcCCCCHHHHH
Confidence 997 79999999999999999887664
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-15 Score=132.85 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=104.8
Q ss_pred HHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh--------------
Q 023070 25 NAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL-------------- 89 (287)
Q Consensus 25 ~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~-------------- 89 (287)
+.|+..+ .|+++|... ||++...+...|+++|++|+.+.+|.+ ++++||+.|.|+||..
T Consensus 28 e~A~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~Id 101 (330)
T 2yzr_A 28 EQAQIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDMID 101 (330)
T ss_dssp HHHHHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCEEe
Confidence 3555444 489999332 399877777779999999999988865 4689999999998721
Q ss_pred -----------h----------------hHHHHHHHHHHcCCCEEEEec--------------cC------------CCC
Q 023070 90 -----------Q----------------DTIKYAKMLEDAGCSLLAVHG--------------RT------------RDE 116 (287)
Q Consensus 90 -----------~----------------~~~~~a~~l~~~G~~~I~vh~--------------rt------------~~~ 116 (287)
. +..+.++++ +.|+++|.+|| |+ ..+
T Consensus 102 ~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~E 180 (330)
T 2yzr_A 102 ESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEE 180 (330)
T ss_dssp EETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHHH
Confidence 0 245666666 78888888888 44 111
Q ss_pred cCC--CCccccH-------------------------------------HHHHHHHhhCCCcE--EEecCCCCHHHHHHH
Q 023070 117 KDG--KKFRADW-------------------------------------NAIKAVKNALRIPV--LANGNVRHMEDVQKC 155 (287)
Q Consensus 117 ~~~--~~~~~~~-------------------------------------~~i~~i~~~~~ipV--i~nGgI~s~~da~~~ 155 (287)
.+. ....++| +.++++++..++|| +++|||.|++|+.++
T Consensus 181 l~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~~ 260 (330)
T 2yzr_A 181 VYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAALM 260 (330)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHHH
T ss_pred HHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH
Confidence 100 0012344 88889998889998 699999999999999
Q ss_pred HHhcCccEEEEehhhh--hCcc
Q 023070 156 LEETGCEGVLSAESLL--ENPA 175 (287)
Q Consensus 156 l~~~gad~VmiGR~~l--~nP~ 175 (287)
++. |||+|+||++++ .||.
T Consensus 261 l~~-GaDgV~VGsaI~~a~dP~ 281 (330)
T 2yzr_A 261 MQL-GSDGVFVGSGIFKSENPL 281 (330)
T ss_dssp HHT-TCSCEEESHHHHTSSCHH
T ss_pred HHc-CcCEEeeHHHHhcCCCHH
Confidence 995 999999999999 4554
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=121.38 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=116.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEE-----
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSC----- 81 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~v----- 81 (287)
+.|+++--+=++++++.++ ++.|+|+|-+ |+.++.+|+.+.++++.+.. .+.+.+++
T Consensus 74 ~ipvi~~ggI~~~~~~~~~---~~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g 136 (253)
T 1thf_D 74 DIPFTVGGGIHDFETASEL---ILRGADKVSI--------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDG 136 (253)
T ss_dssp CSCEEEESSCCSHHHHHHH---HHTTCSEEEE--------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETT
T ss_pred CCCEEEeCCCCCHHHHHHH---HHcCCCEEEE--------------ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCC
Confidence 5677776555777764443 3468998866 46667789999998888743 22233333
Q ss_pred ----EecCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 023070 82 ----KIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 82 ----KiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~ 154 (287)
+++ +|.. .+..++++.+++.|++.|.+|++++.+... ..+|+.++++++.+++||+++|||++++|+.+
T Consensus 137 ~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~ 212 (253)
T 1thf_D 137 EFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLE 212 (253)
T ss_dssp EEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHH
T ss_pred cEEEEEC-CCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCC---CCCHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 332 4432 257888999999999999999888765433 35899999999999999999999999999999
Q ss_pred HHHhcCccEEEEehhhhhCccchhchh
Q 023070 155 CLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+++ +|||+|++|++++.+|+-+.++.
T Consensus 213 ~~~-~Gadgv~vGsal~~~~~~~~~~~ 238 (253)
T 1thf_D 213 AFL-AGADAALAASVFHFREIDVRELK 238 (253)
T ss_dssp HHH-TTCSEEEESHHHHTTCSCHHHHH
T ss_pred HHH-cCChHHHHHHHHHcCCCCHHHHH
Confidence 997 79999999999999997776553
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=133.31 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=113.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEE--------------eccCChh---hhh--------c--Ccccccc--
Q 023070 8 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDI--------------NLGCPQR---IAR--------R--GNYGAFL-- 57 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~Idi--------------N~gcP~~---~~~--------~--~~~G~~l-- 57 (287)
+.|..+||.....+...+..+.+ +.|+..+.| |.||+.+ +.. + ...+.++
T Consensus 123 ~~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~ 202 (380)
T 1p4c_A 123 DGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAA 202 (380)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHH
T ss_pred CCCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHH
Confidence 67899999854444444444433 457776654 6788532 111 1 1112222
Q ss_pred -cC---ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHH
Q 023070 58 -MD---NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKA 131 (287)
Q Consensus 58 -~~---~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~ 131 (287)
+. +|++..++++++++.+++||.+|. . .+.+.++.+.++|+|.|+| ||++. ...+.++|+.+.+
T Consensus 203 ~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkg---v---~t~e~a~~a~~aGad~I~vs~~gg~~----~d~~~~~~~~l~~ 272 (380)
T 1p4c_A 203 LMSRQMDASFNWEALRWLRDLWPHKLLVKG---L---LSAEDADRCIAEGADGVILSNHGGRQ----LDCAISPMEVLAQ 272 (380)
T ss_dssp HTSSCCCTTCCHHHHHHHHHHCCSEEEEEE---E---CCHHHHHHHHHTTCSEEEECCGGGTS----CTTCCCGGGTHHH
T ss_pred HHHhhcCccccHHHHHHHHHhcCCCEEEEe---c---CcHHHHHHHHHcCCCEEEEcCCCCCc----CCCCcCHHHHHHH
Confidence 22 677788999999999999999994 1 2356788999999999999 66542 1223578999999
Q ss_pred HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 132 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 132 i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+++.+++|||++|||++++|+.+++. .|||+||+||+++..
T Consensus 273 v~~~~~~pVia~GGI~~~~dv~kal~-~GAdaV~iGr~~l~~ 313 (380)
T 1p4c_A 273 SVAKTGKPVLIDSGFRRGSDIVKALA-LGAEAVLLGRATLYG 313 (380)
T ss_dssp HHHHHCSCEEECSSCCSHHHHHHHHH-TTCSCEEESHHHHHH
T ss_pred HHHHcCCeEEEECCCCCHHHHHHHHH-hCCcHhhehHHHHHH
Confidence 99988899999999999999999998 699999999999853
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=124.58 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=111.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE-----Ee
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-----KI 83 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v-----Ki 83 (287)
.|+++.=+=++++++.+ +++.|+|+|-+ |+.++.+|+++.++ +...+.+-+.+++ ++
T Consensus 74 ipvi~~Ggi~~~~~~~~---~~~~Gad~V~l--------------g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~ 135 (241)
T 1qo2_A 74 EHIQIGGGIRSLDYAEK---LRKLGYRRQIV--------------SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAF 135 (241)
T ss_dssp GGEEEESSCCSHHHHHH---HHHTTCCEEEE--------------CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECC
T ss_pred CcEEEECCCCCHHHHHH---HHHCCCCEEEE--------------CchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEE
Confidence 45444333345555444 34468998854 56778889988888 7664332223333 33
Q ss_pred cCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-
Q 023070 84 RVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET- 159 (287)
Q Consensus 84 R~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~- 159 (287)
.||.. .++.++++.+++.|++.|.+|++++.+... ..||+.++++++.+++|||++|||++++|+.++++.+
T Consensus 136 -~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~---g~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~ 211 (241)
T 1qo2_A 136 -KGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHT 211 (241)
T ss_dssp -TTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTC---CCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHH
T ss_pred -CCceecCCCCHHHHHHHHHhCCCCEEEEEeecccccCC---cCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhccc
Confidence 25542 257788999999999999999988765433 2589999999999999999999999999999999865
Q ss_pred ---C-ccEEEEehhhhhCccchhchh
Q 023070 160 ---G-CEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 160 ---g-ad~VmiGR~~l~nP~lf~~~~ 181 (287)
| ||+|++|++++..+.-+.++.
T Consensus 212 ~~~G~adgv~vgsal~~~~~~~~~~~ 237 (241)
T 1qo2_A 212 ETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_dssp HTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred ccCCeEeEEEeeHHHHcCCCCHHHHH
Confidence 9 999999999999988766553
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=129.30 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=109.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCC--CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g--~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR 84 (287)
..|+.+|+ |.+++.+..+..+++.| ++.|++|++. | ++....++++.+++.++ .||... .
T Consensus 94 g~~v~v~~-g~~~~~~~~a~~~~~~g~~~~~i~i~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi~G-~ 156 (336)
T 1ypf_A 94 GLIASISV-GVKEDEYEFVQQLAAEHLTPEYITIDIAH----------G-----HSNAVINMIQHIKKHLPESFVIAG-N 156 (336)
T ss_dssp TCCCEEEE-CCSHHHHHHHHHHHHTTCCCSEEEEECSS----------C-----CSHHHHHHHHHHHHHCTTSEEEEE-E
T ss_pred CCeEEEeC-CCCHHHHHHHHHHHhcCCCCCEEEEECCC----------C-----CcHHHHHHHHHHHHhCCCCEEEEC-C
Confidence 45889995 88888887776677778 9999999741 2 67788899999999885 555432 0
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEE--eccCCCC-c-CCCCccc--cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDE-K-DGKKFRA--DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~-~-~~~~~~~--~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-.+.+.|+.+.++|+|+|++ |+++... . ..+.+.+ .++.+.++++.+++|||++|||+++.|+.+++.
T Consensus 157 -----v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala- 230 (336)
T 1ypf_A 157 -----VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR- 230 (336)
T ss_dssp -----ECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH-
T ss_pred -----cCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH-
Confidence 12246789999999999999 5543110 0 0111123 688899999999999999999999999999998
Q ss_pred cCccEEEEehhhhh
Q 023070 159 TGCEGVLSAESLLE 172 (287)
Q Consensus 159 ~gad~VmiGR~~l~ 172 (287)
.|||+||+||+++.
T Consensus 231 lGAdaV~iGr~~l~ 244 (336)
T 1ypf_A 231 FGATMVMIGSLFAG 244 (336)
T ss_dssp TTCSEEEESGGGTT
T ss_pred cCCCEEEeChhhhc
Confidence 69999999999995
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=122.35 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCccccccc-C--ChHHHHHHHHHHh---hcc--CCcE
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM-D--NLPLVKSLVEKLA---LNL--NVPV 79 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~-~--~~~~~~~iv~~v~---~~~--~~pv 79 (287)
+.|+++.=+-++++++.++. +.|+|+|-+. +.++ . +|+.+.++++... +.+ .+++
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~---~~Gad~v~lg--------------~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~ 136 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAF---LAGADKALAA--------------SVFHFREIDMRELKEYLKKHGGSGQAVVVAIDA 136 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHH---HHTCSEEECC--------------CCC------CHHHHHHCC----CCCEEEEEEEE
T ss_pred CCCEEEECCCCCHHHHHHHH---HcCCcHhhhh--------------HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEE
Confidence 56777754446777765554 3588888763 4445 4 7888888776654 121 2222
Q ss_pred -------EEEecCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH
Q 023070 80 -------SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 149 (287)
Q Consensus 80 -------~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~ 149 (287)
.|+++ +|.. .+..++++.+++.|++.|.+|++++.+... ..+|+.++++++.+++|||++|||+++
T Consensus 137 ~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~---g~~~~~i~~l~~~~~ipvia~GGI~~~ 212 (266)
T 2w6r_A 137 KRVDGEFMVFTH-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKM 212 (266)
T ss_dssp EEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCS---CCCHHHHHHHGGGCCSCEEEESCCCSH
T ss_pred EecCCCEEEEEC-CCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHHcCCCEEEeCCCCCH
Confidence 34443 4432 256788999999999999999988765433 358999999999999999999999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+|+.++++ +|||+|++|++++.+|+.+.++.
T Consensus 213 ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~~ 243 (266)
T 2w6r_A 213 EHFLEAFL-AGADAALAASVFHFREIDMRELK 243 (266)
T ss_dssp HHHHHHHH-HTCSEEEESTTTC----------
T ss_pred HHHHHHHH-cCCHHHHccHHHHcCCCCHHHHH
Confidence 99999997 79999999999999999888765
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-14 Score=128.92 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCCEE-----EEecC-CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH-HHHHHHHHHhhccCCcEE
Q 023070 8 DRPLF-----VQFCA-NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP-LVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 8 ~~p~~-----~Qi~g-~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~-~~~~iv~~v~~~~~~pv~ 80 (287)
+.|++ +|+.+ .+++.+.++++.+++++..|+||. ...+.... |. .+.. ...+.++.+++.+++||.
T Consensus 119 ~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~---~~~~~~p~-g~---~~~~~~~~~~i~~i~~~~~vPVi 191 (368)
T 3vkj_A 119 TIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNP---AQEVFQPE-GE---PEYQIYALEKLRDISKELSVPII 191 (368)
T ss_dssp SSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCH---HHHHHSSS-CC---CBCBTHHHHHHHHHHTTCSSCEE
T ss_pred CcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecc---hhhhhCCC-CC---chhhHHHHHHHHHHHHHcCCCEE
Confidence 34665 45555 889999999998876766777773 32222211 11 1222 367889999999999999
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCCEEEEe--ccC--------CCCc-----------CCCCccccHHHHHHHHhhC-CC
Q 023070 81 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRT--------RDEK-----------DGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 81 vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh--~rt--------~~~~-----------~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+|. .|+.. +.+.|+.+.++|+++|+|. |+| +... ...-+.+....+.++++.+ ++
T Consensus 192 vK~-vG~g~--s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~i 268 (368)
T 3vkj_A 192 VKE-SGNGI--SMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDS 268 (368)
T ss_dssp EEC-SSSCC--CHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTC
T ss_pred EEe-CCCCC--CHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCC
Confidence 996 54432 2467899999999999994 443 1100 0000122335677888777 49
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
|||++|||+++.|+.+++. .|||+||+||+++
T Consensus 269 pvia~GGI~~~~d~~kal~-lGA~~v~ig~~~l 300 (368)
T 3vkj_A 269 FLVGSGGIRSGLDAAKAIA-LGADIAGMALPVL 300 (368)
T ss_dssp EEEEESSCCSHHHHHHHHH-HTCSEEEECHHHH
T ss_pred cEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHH
Confidence 9999999999999999999 5999999999765
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=117.27 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=115.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-cc----CC-----
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NL----NV----- 77 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~----~~----- 77 (287)
+.|+++.-+-.+++++.++ ++.|+|+|.++. .++.+|+.+.++.+.... .+ +.
T Consensus 77 ~ipvi~~g~i~~~~~~~~~---~~~Gad~V~i~~--------------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g 139 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDATTL---FRAGADKVSVNT--------------AAVRNPQLVALLAREFGSQSTVVAIDAKWNGE 139 (253)
T ss_dssp SSCEEEESSCCSHHHHHHH---HHHTCSEEEESH--------------HHHHCTHHHHHHHHHHCGGGEEEEEEEEECSS
T ss_pred CCCEEEECCCCCHHHHHHH---HHcCCCEEEECh--------------HHhhCcHHHHHHHHHcCCCcEEEEEEeecCCC
Confidence 4688777666788775443 345899999972 345678888888777542 11 22
Q ss_pred cEEEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 78 PVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 78 pv~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.++++.++. ..+..++++.+.+.|+++|.+|+++..+... ..+++.++++++.+++||+++|||++++++.++
T Consensus 140 ~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~---~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~ 216 (253)
T 1h5y_A 140 YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGL---GYDVELIRRVADSVRIPVIASGGAGRVEHFYEA 216 (253)
T ss_dssp SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHH
T ss_pred cEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcC---cCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 15777776542 2356788999999999999999988765432 358999999999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchhch
Q 023070 156 LEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++ .|||+|++|++++.+++-+.++
T Consensus 217 ~~-~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 217 AA-AGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp HH-TTCSEEEESHHHHTTSSCHHHH
T ss_pred HH-cCCcHHHHHHHHHcCCCCHHHH
Confidence 97 7999999999999887655443
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=123.01 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=106.0
Q ss_pred CCCEEEEecCC----CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCAN----DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~----~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|+.++++.+ +++ +.+.++ +++.|+|+|.+|+|||. ++++.+++. ++++..+
T Consensus 67 ~~p~~v~l~v~~~~~~~~-~~~~~~~~~~~g~d~V~~~~g~p~--------------------~~~~~l~~~-gi~vi~~ 124 (328)
T 2gjl_A 67 DRPFGVNLTLLPTQKPVP-YAEYRAAIIEAGIRVVETAGNDPG--------------------EHIAEFRRH-GVKVIHK 124 (328)
T ss_dssp SSCCEEEEEECCCSSCCC-HHHHHHHHHHTTCCEEEEEESCCH--------------------HHHHHHHHT-TCEEEEE
T ss_pred CCCeEEEEeccccccCcc-HHHHHHHHHhcCCCEEEEcCCCcH--------------------HHHHHHHHc-CCCEEee
Confidence 46899999997 343 444444 45679999999998872 234455544 7888877
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+. +.+.++.+.+.|+|+|.+++++..+..+.....+|+.++++++.+++||+++|||.+++++.+++. .|||
T Consensus 125 v~-------t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al~-~GAd 196 (328)
T 2gjl_A 125 CT-------AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAALA-LGAD 196 (328)
T ss_dssp ES-------SHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCS
T ss_pred CC-------CHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCC
Confidence 52 234567788999999999987653221111236899999999989999999999999999999998 5999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+|++||+++..|.
T Consensus 197 gV~vGs~~~~~~e 209 (328)
T 2gjl_A 197 AINMGTRFLATRE 209 (328)
T ss_dssp EEEESHHHHTSSS
T ss_pred EEEECHHHHcCcc
Confidence 9999999999988
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-13 Score=122.60 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=106.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.++++..+|+.-..+..+++.|+|.|.+|+|||.. +++.+++ .+++|.+++.
T Consensus 77 ~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~p~~--------------------~~~~l~~-~g~~v~~~v~--- 132 (326)
T 3bo9_A 77 DKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPTK--------------------YIRELKE-NGTKVIPVVA--- 132 (326)
T ss_dssp SSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSCCHH--------------------HHHHHHH-TTCEEEEEES---
T ss_pred CCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCCcHH--------------------HHHHHHH-cCCcEEEEcC---
Confidence 579999999976643222223456799999999998842 2333433 3788888762
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+.++.+.+.|+|+|.++++...+..+ ...+|+.+.++++.+++||+++|||.|++++.+++. .|||+|++|
T Consensus 133 ----s~~~a~~a~~~GaD~i~v~g~~~GG~~G--~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~-~GA~gV~vG 205 (326)
T 3bo9_A 133 ----SDSLARMVERAGADAVIAEGMESGGHIG--EVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA-LGAEAVQMG 205 (326)
T ss_dssp ----SHHHHHHHHHTTCSCEEEECTTSSEECC--SSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEES
T ss_pred ----CHHHHHHHHHcCCCEEEEECCCCCccCC--CccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-hCCCEEEec
Confidence 2455778889999999999876443212 146899999999989999999999999999999998 699999999
Q ss_pred hhhhhCccc
Q 023070 168 ESLLENPAL 176 (287)
Q Consensus 168 R~~l~nP~l 176 (287)
++++..+..
T Consensus 206 s~~~~~~e~ 214 (326)
T 3bo9_A 206 TRFVASVES 214 (326)
T ss_dssp HHHHTBSSC
T ss_pred hHHHcCccc
Confidence 999988874
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=127.41 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=107.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN 88 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~ 88 (287)
++++.+.. +++....+..+++.|+|.|+||+++ | +++.+.++++.+++.+ ++||.++.
T Consensus 143 ~~~~~i~~-~~~~~~~a~~~~~~G~d~i~i~~~~----------g-----~~~~~~e~i~~ir~~~~~~pviv~~----- 201 (404)
T 1eep_A 143 RVGAAVSI-DIDTIERVEELVKAHVDILVIDSAH----------G-----HSTRIIELIKKIKTKYPNLDLIAGN----- 201 (404)
T ss_dssp CCEEEECS-CTTHHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHHHHHHHHCTTCEEEEEE-----
T ss_pred eEEEEeCC-ChhHHHHHHHHHHCCCCEEEEeCCC----------C-----ChHHHHHHHHHHHHHCCCCeEEEcC-----
Confidence 46777765 3445555555677899999999653 1 4688899999999888 89999852
Q ss_pred hhhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
-.+.+.++.++++|+|+|+|.. ++... ...+.++++.+..+++ ..++|||++|||++++|+.+++. .
T Consensus 202 -v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~--~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala-~ 277 (404)
T 1eep_A 202 -IVTKEAALDLISVGADCLKVGIGPGSICTTRIV--AGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA-A 277 (404)
T ss_dssp -ECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHH--HCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH-H
T ss_pred -CCcHHHHHHHHhcCCCEEEECCCCCcCcCcccc--CCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHH-c
Confidence 1224678889999999999921 11100 0112346666666665 56899999999999999999998 5
Q ss_pred CccEEEEehhhhhCccchhc
Q 023070 160 GCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~ 179 (287)
|||+|++||+++..|+....
T Consensus 278 GAd~V~iG~~~l~~~e~~~~ 297 (404)
T 1eep_A 278 GADSVMIGNLFAGTKESPSE 297 (404)
T ss_dssp TCSEEEECHHHHTBTTSSSC
T ss_pred CCCHHhhCHHHhcCCCCCcc
Confidence 99999999999999887643
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-13 Score=122.80 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=102.7
Q ss_pred CCCEEEEecCCCH-HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|++.+|....+ +++.++++.+ ++|++.||+...+......+ ..+.+-+.+.++.+++.+++||.+|. .|
T Consensus 144 ~~~~ianig~~~~~e~~~~~ve~~--~adal~ihln~~qe~~~p~G-----d~~~~~~~~~I~~l~~~~~~PVivK~-vg 215 (365)
T 3sr7_A 144 HLLLATNIGLDKPYQAGLQAVRDL--QPLFLQVHINLMQELLMPEG-----EREFRSWKKHLSDYAKKLQLPFILKE-VG 215 (365)
T ss_dssp -CCEEEEEETTSCHHHHHHHHHHH--CCSCEEEEECHHHHHTSSSS-----CCCCHHHHHHHHHHHHHCCSCEEEEE-CS
T ss_pred CCcEEEEeCCCCCHHHHHHHHHhc--CCCEEEEeccccccccCCCC-----CCcHHHHHHHHHHHHHhhCCCEEEEE-CC
Confidence 6788889876543 3344444333 67777777654444333322 23455577899999999999999994 33
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----C---C-----CCccccHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----D---G-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDV 152 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----~---~-----~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da 152 (287)
+. ...+.++.+.++|+|+|+|+++..... . . ..+.+....+..++... ++|||++|||+++.|+
T Consensus 216 ~g--~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv 293 (365)
T 3sr7_A 216 FG--MDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDI 293 (365)
T ss_dssp SC--CCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHH
T ss_pred CC--CCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHH
Confidence 32 234668889999999999965522110 0 0 11123335666664432 7999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhh
Q 023070 153 QKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~ 172 (287)
.++|. .|||+||+||+++.
T Consensus 294 ~KaLa-lGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 294 IKALV-LGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHHH-HTCSEEEESHHHHH
T ss_pred HHHHH-cCCCEEEECHHHHH
Confidence 99998 69999999997653
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-13 Score=124.25 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=114.8
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hh----hcC----------cc--------ccc---ccC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IA----RRG----------NY--------GAF---LMD 59 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~----~~~----------~~--------G~~---l~~ 59 (287)
+.|...||.-. |.+...+..+.++ .||.+|=+..-.|.. +. +.+ .+ ++. -.-
T Consensus 121 ~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T 3sgz_A 121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFP 200 (352)
T ss_dssp TCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CC
T ss_pred CccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhcc
Confidence 46789998654 5555555556665 599888887666652 11 000 00 111 123
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+|.+..+.++.+++.+++||.+|... ..+.++.+.++|+|+|+|++....+. ..+++.++.+.++++.+ +
T Consensus 201 d~~~~w~~i~~lr~~~~~PvivK~v~------~~e~A~~a~~~GaD~I~vsn~GG~~~--d~~~~~~~~L~~i~~av~~~ 272 (352)
T 3sgz_A 201 KASFCWNDLSLLQSITRLPIILKGIL------TKEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGK 272 (352)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEEEEC------SHHHHHHHHHTTCSEEEECCGGGTSS--CSSCCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEecC------cHHHHHHHHHcCCCEEEEeCCCCCcc--CCCccHHHHHHHHHHHhCCC
Confidence 56777788999999999999999753 24668899999999999965433222 23467899999998877 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+|||++|||++..|+.++|. .|||+||+||+++..+
T Consensus 273 ipVia~GGI~~g~Dv~kaLa-lGA~aV~iGr~~l~~l 308 (352)
T 3sgz_A 273 IEVYMDGGVRTGTDVLKALA-LGARCIFLGRPILWGL 308 (352)
T ss_dssp SEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHH
Confidence 99999999999999999998 6999999999877443
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=119.29 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=127.6
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
..|+...+.+.+++.|.++|+ ..+.||+.|+||+|| +++...+++++|++++ ++++.++.+.
T Consensus 136 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~ 199 (384)
T 2pgw_A 136 AVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANE 199 (384)
T ss_dssp EEEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTT
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 345556666789999999887 456799999999875 6788899999999988 6899999999
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+|+.++++++++.+++.|+++|. +.. .+.+|+.++++++.+++||++++.+.+++++.++++.+.||.|+
T Consensus 200 ~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ 269 (384)
T 2pgw_A 200 GWSVHDAINMCRKLEKYDIEFIE-------QPT---VSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMIC 269 (384)
T ss_dssp CCCHHHHHHHHHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEe-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999999999885 211 14689999999999999999999999999999999988899999
Q ss_pred EehhhhhCccchhchh
Q 023070 166 SAESLLENPALFAGFR 181 (287)
Q Consensus 166 iGR~~l~nP~lf~~~~ 181 (287)
+..+.++.++-+.++.
T Consensus 270 ik~~~~GGit~~~~i~ 285 (384)
T 2pgw_A 270 IGPREIGGIQPMMKAA 285 (384)
T ss_dssp ECHHHHTSHHHHHHHH
T ss_pred EcchhhCCHHHHHHHH
Confidence 9999999998766553
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=126.57 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+++.+.++..+++.|+|+|+||.+|. +++...++++++++.+ ++||.+|- -.+.+.
T Consensus 251 G~~~~~~~~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~~~~~pvi~~~------v~t~~~ 309 (514)
T 1jcn_A 251 GTREDDKYRLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQKYPHLQVIGGN------VVTAAQ 309 (514)
T ss_dssp CSSTTHHHHHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHHCTTCEEEEEE------ECSHHH
T ss_pred cCchhhHHHHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHhCCCCceEecc------cchHHH
Confidence 5556666677667788999999998652 3467788999999888 89999861 123566
Q ss_pred HHHHHHcCCCEEEEe---ccC---CCCc-CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 96 AKMLEDAGCSLLAVH---GRT---RDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 96 a~~l~~~G~~~I~vh---~rt---~~~~-~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++.+.++|+|+|.|. |.+ +... .+.+....+..+.++++.+++|||++|||+++.|+.+++. .|||+||+||
T Consensus 310 a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala-~GAd~V~iG~ 388 (514)
T 1jcn_A 310 AKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALA-LGASTVMMGS 388 (514)
T ss_dssp HHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEEST
T ss_pred HHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH-cCCCeeeECH
Confidence 889999999999982 111 1110 0111234577888888888999999999999999999999 5999999999
Q ss_pred hhhhCccchhch
Q 023070 169 SLLENPALFAGF 180 (287)
Q Consensus 169 ~~l~nP~lf~~~ 180 (287)
+++..|+.....
T Consensus 389 ~~l~~~e~~~~~ 400 (514)
T 1jcn_A 389 LLAATTEAPGEY 400 (514)
T ss_dssp TTTTSTTSSCC-
T ss_pred HHHcCCcCCcce
Confidence 999999866543
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-12 Score=117.54 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=94.0
Q ss_pred HHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHc
Q 023070 24 LNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102 (287)
Q Consensus 24 ~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~ 102 (287)
.+.++ +++.|+|.|.+|+|||. .++++.+++ .+++|.+++. +.+.++.+++.
T Consensus 112 ~~~~~~~~~~g~~~V~~~~g~~~-------------------~~~i~~~~~-~g~~v~~~v~-------t~~~a~~a~~~ 164 (369)
T 3bw2_A 112 DAKLAVLLDDPVPVVSFHFGVPD-------------------REVIARLRR-AGTLTLVTAT-------TPEEARAVEAA 164 (369)
T ss_dssp HHHHHHHHHSCCSEEEEESSCCC-------------------HHHHHHHHH-TTCEEEEEES-------SHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCc-------------------HHHHHHHHH-CCCeEEEECC-------CHHHHHHHHHc
Confidence 34444 34568999999999874 123444444 3788888762 23457788899
Q ss_pred CCCEEEEeccCCCCcCCC----C---c--cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 103 GCSLLAVHGRTRDEKDGK----K---F--RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~----~---~--~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
|+|+|.++++...+..+. . + ...|+.++++++.+++||++.|||.+++++.+++. .|||+|++||+++.+
T Consensus 165 GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~~~l~-~GAd~V~vGs~~~~~ 243 (369)
T 3bw2_A 165 GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIAAVLA-AGADAAQLGTAFLAT 243 (369)
T ss_dssp TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTS
T ss_pred CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHH-cCCCEEEEChHHhCC
Confidence 999999987543211000 0 0 12389999999989999999999999999999998 599999999999999
Q ss_pred ccchh
Q 023070 174 PALFA 178 (287)
Q Consensus 174 P~lf~ 178 (287)
|+...
T Consensus 244 ~e~~~ 248 (369)
T 3bw2_A 244 DESGA 248 (369)
T ss_dssp TTCCC
T ss_pred cccCc
Confidence 98753
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=125.71 Aligned_cols=143 Identities=20% Similarity=0.136 Sum_probs=106.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+..+..-.|..++.+..+..++++|+|.|.||..|| +.+.+.++++.+++.. ++||.++-
T Consensus 219 rL~v~aavG~~~d~~~~a~~l~~aG~d~I~id~a~g---------------~~~~~~~~i~~ir~~~p~~~Vi~g~---- 279 (496)
T 4fxs_A 219 RLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHG---------------HSEGVLQRIRETRAAYPHLEIIGGN---- 279 (496)
T ss_dssp CBCCEEECCSSSCCHHHHHHHHHTTCSEEEEECSCT---------------TSHHHHHHHHHHHHHCTTCCEEEEE----
T ss_pred ceeeeeeeccccchHHHHHHHHhccCceEEeccccc---------------cchHHHHHHHHHHHHCCCceEEEcc----
Confidence 333334456666777777778889999999998876 3456778899998887 78998852
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc------CCCCcCCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-.+.+.++.+.++|+|+|.|.+. ++.. .+.+.+++..+.++.+. .++|||++|||.+++|+.+++.
T Consensus 280 --v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~--~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala- 354 (496)
T 4fxs_A 280 --VATAEGARALIEAGVSAVKVGIGPGSICTTRIV--TGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIA- 354 (496)
T ss_dssp --ECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHH--HCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-
T ss_pred --cCcHHHHHHHHHhCCCEEEECCCCCcCcccccc--cCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHH-
Confidence 12245688899999999998421 1111 11234677777777764 4799999999999999999998
Q ss_pred cCccEEEEehhhhhCcc
Q 023070 159 TGCEGVLSAESLLENPA 175 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~ 175 (287)
.|||+||+||+++.-..
T Consensus 355 ~GAd~V~iGs~f~~t~E 371 (496)
T 4fxs_A 355 AGASCVMVGSMFAGTEE 371 (496)
T ss_dssp TTCSEEEESTTTTTBTT
T ss_pred cCCCeEEecHHHhcCCC
Confidence 59999999999876443
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=113.06 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=85.4
Q ss_pred EEEEecCCCCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 79 VSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 79 v~vKiR~g~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
..||+|.++.. .++.++++.+++.|+++|+++..+...... ..+++.++++++.+++||+++|||+|++++.+++
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~~~---~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l 98 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 98 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTCSS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccCCC---cccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 56788855432 378999999999999999999877653222 4789999999999999999999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+ .|||+|++||+++.||+++.++..
T Consensus 99 ~-~Gad~V~ig~~~l~dp~~~~~~~~ 123 (247)
T 3tdn_A 99 L-RGADKVSINTAAVENPSLITQIAQ 123 (247)
T ss_dssp H-TTCSEECCSHHHHHCTHHHHHHHH
T ss_pred H-cCCCeeehhhHHhhChHHHHHHHH
Confidence 7 589999999999999999887754
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-12 Score=107.88 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=109.5
Q ss_pred CEEEEecCC----CHHHHHHHHHHH-cCCCCEEEEe-----------ccCChhhh-hcC-------------------cc
Q 023070 10 PLFVQFCAN----DPEILLNAARRV-EPYCDYVDIN-----------LGCPQRIA-RRG-------------------NY 53 (287)
Q Consensus 10 p~~~Qi~g~----~~~~~~~aA~~~-~~g~d~IdiN-----------~gcP~~~~-~~~-------------------~~ 53 (287)
-+++|+.++ +++...+.|+.+ +.|+++|.++ .++|.-.. +++ ..
T Consensus 8 ~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 87 (223)
T 1y0e_A 8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES 87 (223)
T ss_dssp EEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhC
Confidence 367899999 888888888865 4599999887 45776211 111 11
Q ss_pred cccc-------cCCh-HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEe--ccCCCCcCCCCc
Q 023070 54 GAFL-------MDNL-PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKF 122 (287)
Q Consensus 54 G~~l-------~~~~-~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh--~rt~~~~~~~~~ 122 (287)
|+.. ..+| ..+.++++.+++.. +.++.+.+. + .+.++.+++.|+++|.+. +.+.........
T Consensus 88 Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t----~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~ 160 (223)
T 1y0e_A 88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---T----VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLY 160 (223)
T ss_dssp TCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---S----HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTT
T ss_pred CCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---C----HHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCC
Confidence 2211 1133 34567777777655 667766542 2 223566889999999763 343322211112
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
..+++.++++++.+++||+++|||+|++++.++++ .|||+|++||+++. |+...
T Consensus 161 ~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~-~Gad~v~vG~al~~-p~~~~ 214 (223)
T 1y0e_A 161 QNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD-LGVHCSVVGGAITR-PKEIT 214 (223)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHC-HHHHH
T ss_pred cccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHH-cCCCEEEEChHHcC-cHHHH
Confidence 45788999999999999999999999999999998 59999999999765 76543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=121.69 Aligned_cols=136 Identities=21% Similarity=0.168 Sum_probs=104.3
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 16 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 16 ~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.|..++.+.++..++++|+|.|.||..|+. +..+.++++.+++.. ++||.++- -.+.+
T Consensus 224 vG~~~~~~~~a~~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~p~~~Vi~g~------v~t~e 282 (490)
T 4avf_A 224 VGTGADTGERVAALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTFPDVQVIGGN------IATAE 282 (490)
T ss_dssp ECSSTTHHHHHHHHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHCTTSEEEEEE------ECSHH
T ss_pred eccccchHHHHHHHhhcccceEEecccCCc---------------chhHHHHHHHHHHHCCCceEEEee------eCcHH
Confidence 355667777777788899999999987753 456778889998887 78998862 12245
Q ss_pred HHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 95 YAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.++.+.++|+|+|.|.. .++.. .+.+.+++..+.++++. .++|||++|||.+++|+.+++. .|||+||
T Consensus 283 ~a~~l~~aGaD~I~vg~g~Gs~~~t~~~--~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~-~GAd~V~ 359 (490)
T 4avf_A 283 AAKALAEAGADAVKVGIGPGSICTTRIV--AGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV-AGAYCVM 359 (490)
T ss_dssp HHHHHHHTTCSEEEECSSCSTTCHHHHH--TCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHHcCCCEEEECCCCCcCCCcccc--CCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHH-cCCCeee
Confidence 68889999999999831 11110 12234678888888774 4799999999999999999998 5999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+|++++.-+.
T Consensus 360 vGs~~~~~~E 369 (490)
T 4avf_A 360 MGSMFAGTEE 369 (490)
T ss_dssp ECTTTTTBTT
T ss_pred ecHHHhcCCC
Confidence 9999987554
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=109.47 Aligned_cols=151 Identities=14% Similarity=0.215 Sum_probs=106.0
Q ss_pred CCCCEEEEecCCC-----HHH---HHHHHHHHcCCCCEE--EEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC
Q 023070 7 EDRPLFVQFCAND-----PEI---LLNAARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~---~~~aA~~~~~g~d~I--diN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~ 76 (287)
.+.|+++|+.+.. +.. ..++.+.++.|+|.| .+|.+|+.. ..+ .+.+.++++..+ ..+
T Consensus 78 ~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~--------~~~---~~~~~~v~~~~~-~~g 145 (273)
T 2qjg_A 78 KDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDED--------WEA---YRDLGMIAETCE-YWG 145 (273)
T ss_dssp CCCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEEETSTTH--------HHH---HHHHHHHHHHHH-HHT
T ss_pred CCCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEecCCCCH--------HHH---HHHHHHHHHHHH-HcC
Confidence 4678999998765 211 333444567899999 788887621 111 133444554443 247
Q ss_pred CcEEEEec-------CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCC-
Q 023070 77 VPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH- 148 (287)
Q Consensus 77 ~pv~vKiR-------~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s- 148 (287)
+|+.+.+- .+++..+..+.++.+++.|+|+|.++. +.+|+.++++++.+++||+++|||.+
T Consensus 146 ~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~-----------~~~~~~l~~i~~~~~ipvva~GGi~~~ 214 (273)
T 2qjg_A 146 MPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY-----------TGDIDSFRDVVKGCPAPVVVAGGPKTN 214 (273)
T ss_dssp CCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC-----------CSSHHHHHHHHHHCSSCEEEECCSCCS
T ss_pred CCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC-----------CCCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 88888752 123444555666889999999998872 25789999999989999999999995
Q ss_pred -HHHHHHHHH---hcCccEEEEehhhhhCccchhch
Q 023070 149 -MEDVQKCLE---ETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 149 -~~da~~~l~---~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.+|+.+.+. ..||++|++||+++..||.+..+
T Consensus 215 ~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~ 250 (273)
T 2qjg_A 215 TDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGIT 250 (273)
T ss_dssp SHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHH
Confidence 888554442 36999999999999999876543
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-12 Score=115.52 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=107.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
...|+.++++.++ ...+..+++.|+|.|.||... .+++.+.+.++.+++..++||.++.-
T Consensus 94 ~~~pvga~ig~~~---~e~a~~l~eaGad~I~ld~a~---------------G~~~~~~~~i~~i~~~~~~~Vivg~v-- 153 (361)
T 3khj_A 94 GGLRVGAAIGVNE---IERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIKSKMNIDVIVGNV-- 153 (361)
T ss_dssp TCCCCEEEECTTC---HHHHHHHHHTTCSEEEECCSC---------------CSBHHHHHHHHHHHHHCCCEEEEEEE--
T ss_pred cCceEEEEeCCCH---HHHHHHHHHcCcCeEEEeCCC---------------CCcHHHHHHHHHHHHhcCCcEEEccC--
Confidence 3578999997766 333444567899999999542 14677788899988877999998631
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCC--Cc--CCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRD--EK--DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--~~--~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+.+.++.+.++|+|+|.|...... .. ....+.+++..+.++++ .+++|||++|||.+++|+.+++. .
T Consensus 154 ----~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala-~ 228 (361)
T 3khj_A 154 ----VTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALA-V 228 (361)
T ss_dssp ----CSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHH-H
T ss_pred ----CCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHH-c
Confidence 2346688899999999999311100 00 01122456777766643 45899999999999999999999 5
Q ss_pred CccEEEEehhhhhCccchhc
Q 023070 160 GCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~ 179 (287)
|||+||+|++++..+....+
T Consensus 229 GAd~V~vGs~~~~t~Esp~~ 248 (361)
T 3khj_A 229 GASSVMIGSILAGTEESPGE 248 (361)
T ss_dssp TCSEEEESTTTTTBTTSSCE
T ss_pred CCCEEEEChhhhcCCcCCcc
Confidence 99999999999988775443
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=107.00 Aligned_cols=127 Identities=13% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
.++...++.|+|.|-++.. ...+|+.+.++++.+++. +.++.+.+. +.+.++.+++.|
T Consensus 92 ~~i~~~~~aGad~I~l~~~--------------~~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~G 149 (229)
T 3q58_A 92 QDVDALAQAGADIIAFDAS--------------FRSRPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGISCHQKG 149 (229)
T ss_dssp HHHHHHHHHTCSEEEEECC--------------SSCCSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECcc--------------ccCChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHHHHHhCC
Confidence 3444456679999988743 124667788888888764 788887753 345678889999
Q ss_pred CCEEEE--eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 104 CSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 104 ~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+++|.+ +|+|...+ ...++|+.++++++. ++|||++|||.|++|+.++++ .|||+|++|++++ +|+.+.
T Consensus 150 ad~Ig~~~~g~t~~~~---~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~-~GadgV~VGsai~-~p~~~~ 220 (229)
T 3q58_A 150 IEFIGTTLSGYTGPIT---PVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIE-HGAWAVTVGSAIT-RIEHIC 220 (229)
T ss_dssp CSEEECTTTTSSSSCC---CSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHH-TTCSEEEECHHHH-CHHHHH
T ss_pred CCEEEecCccCCCCCc---CCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHH-cCCCEEEEchHhc-ChHHHH
Confidence 999964 55554432 235789999999988 999999999999999999998 5999999996665 677554
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=111.75 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=121.0
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..++-.+++++.++|+ ..+.||+.|+||+||+ +++...++++++++.+ ++++.++.+
T Consensus 133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 197 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYN 197 (359)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 345555543368999998887 4567999999999872 4677889999999887 689999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+|+.+++.++++.+++.|+++|- +.. .+.||+.++++++.+++||++++.+.+++++.++++...||.|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v 267 (359)
T 1mdl_A 198 QSLDVPAAIKRSQALQQEGVTWIE-------EPT---LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLA 267 (359)
T ss_dssp TCSCHHHHHHHHHHHHHHTCSCEE-------CCS---CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEE-------CCC---ChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999999872 211 1468999999999999999999999999999999998889999
Q ss_pred EEehhhhhCccchhc
Q 023070 165 LSAESLLENPALFAG 179 (287)
Q Consensus 165 miGR~~l~nP~lf~~ 179 (287)
++..+-++.++-+.+
T Consensus 268 ~ik~~~~GGi~~~~~ 282 (359)
T 1mdl_A 268 MPDAMKIGGVTGWIR 282 (359)
T ss_dssp CCBTTTTTHHHHHHH
T ss_pred eecchhhCCHHHHHH
Confidence 997766666554443
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=106.38 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=95.6
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
.++-..++.|+|.|-++.. ...+|+.+.++++.+++. ++++.+.+. +.+.++.+++.|
T Consensus 92 ~~i~~~~~~Gad~V~l~~~--------------~~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~G 149 (232)
T 3igs_A 92 DDVDALAQAGAAIIAVDGT--------------ARQRPVAVEALLARIHHH-HLLTMADCS-------SVDDGLACQRLG 149 (232)
T ss_dssp HHHHHHHHHTCSEEEEECC--------------SSCCSSCHHHHHHHHHHT-TCEEEEECC-------SHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECcc--------------ccCCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHHHHHHhCC
Confidence 3444456679999988742 224667788888888764 778887643 245678889999
Q ss_pred CCEEEE--eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 104 CSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 104 ~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
+++|.+ +|+|...+ ....+|+.++++++. ++|||++|||.|++|+.++++ .|||+|++|++++ +|+..
T Consensus 150 ad~Ig~~~~g~t~~~~---~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~-~GadgV~VGsal~-~p~~~ 219 (232)
T 3igs_A 150 ADIIGTTMSGYTTPDT---PEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIR-YGAWAVTVGSAIT-RLEHI 219 (232)
T ss_dssp CSEEECTTTTSSSSSC---CSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHH-CHHHH
T ss_pred CCEEEEcCccCCCCCC---CCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHH-cCCCEEEEehHhc-CHHHH
Confidence 999964 45554332 235789999999988 999999999999999999998 5999999997766 67644
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-11 Score=110.42 Aligned_cols=144 Identities=12% Similarity=0.067 Sum_probs=120.7
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..+...+++.+.++|+ ..+.||+.|+||+|+ +++...+++++|++.+ ++++.++.+
T Consensus 134 ~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan 197 (379)
T 2rdx_A 134 GAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADAN 197 (379)
T ss_dssp SEEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECT
T ss_pred ceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 345555554478999999887 456799999999886 4688889999999988 599999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+|+.++++++++.+++.|+ +|. + .. + +|+..+++++.+++||++++.+.+++++.++++.+.||.|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i-~iE-------~--P~--~-~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v 264 (379)
T 2rdx_A 198 QGWRVDNAIRLARATRDLDY-ILE-------Q--PC--R-SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEIC 264 (379)
T ss_dssp TCSCHHHHHHHHHHTTTSCC-EEE-------C--CS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhCCe-EEe-------C--Cc--C-CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 99999999999999999999 762 2 12 3 8999999999999999999999999999999998889999
Q ss_pred EEehhhhhCccchhch
Q 023070 165 LSAESLLENPALFAGF 180 (287)
Q Consensus 165 miGR~~l~nP~lf~~~ 180 (287)
++-.+-.+.++-+.++
T Consensus 265 ~ik~~~~GGit~~~~i 280 (379)
T 2rdx_A 265 CLKISNLGGLSKARRT 280 (379)
T ss_dssp EEETTTTTSHHHHHHH
T ss_pred EEeccccCCHHHHHHH
Confidence 9987777776654443
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=110.45 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=125.9
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
.+..|+..++++.+|+.+++.++ .++.||+.|.|++|| +++...+++++|++++ ++++.++
T Consensus 132 r~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vD 195 (378)
T 3eez_A 132 RTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYD 195 (378)
T ss_dssp CSCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEE
T ss_pred CCeEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEE
Confidence 34567888999999999999887 457799999999986 3666788999999987 6899999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+.+|+.+++.++++.+++.|+ +|. + .. + +|+.++++++.+++||++++.+.+++++.++++.+++|
T Consensus 196 an~~~~~~~a~~~~~~l~~~~i-~iE-------q--P~--~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d 262 (378)
T 3eez_A 196 VNRGWTRQQALRVMRATEDLHV-MFE-------Q--PG--E-TLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAE 262 (378)
T ss_dssp CTTCCCHHHHHHHHHHTGGGTC-CEE-------C--CS--S-SHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHhccCCe-EEe-------c--CC--C-CHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCC
Confidence 9999999999999999999998 772 2 11 3 89999999999999999999999999999999988899
Q ss_pred EEEEehhhhhCccchhch
Q 023070 163 GVLSAESLLENPALFAGF 180 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~ 180 (287)
.|++..+..+.++-+.++
T Consensus 263 ~v~ik~~~~GGit~~~~i 280 (378)
T 3eez_A 263 VFGIKLNRVGGLTRAARM 280 (378)
T ss_dssp EEEEEHHHHTSHHHHHHH
T ss_pred EEEeCchhcCCHHHHHHH
Confidence 999999888888766554
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=105.90 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=106.6
Q ss_pred CCCEEEEecCCC----HH--HHHHHHHHH-cCCCCEEEEe-----------ccCChh-hhhcC-----------------
Q 023070 8 DRPLFVQFCAND----PE--ILLNAARRV-EPYCDYVDIN-----------LGCPQR-IARRG----------------- 51 (287)
Q Consensus 8 ~~p~~~Qi~g~~----~~--~~~~aA~~~-~~g~d~IdiN-----------~gcP~~-~~~~~----------------- 51 (287)
..++++|...++ ++ .+.+.++.+ +.|+++|.++ .++|.- ..+++
T Consensus 17 ~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~ 96 (234)
T 1yxy_A 17 GIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQ 96 (234)
T ss_dssp SCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHH
T ss_pred CEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHH
Confidence 445667776655 66 677777654 4588888887 345541 11111
Q ss_pred --ccccccc-------CCh--HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEE--EEeccCCCCc
Q 023070 52 --NYGAFLM-------DNL--PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--AVHGRTRDEK 117 (287)
Q Consensus 52 --~~G~~l~-------~~~--~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I--~vh~rt~~~~ 117 (287)
..|+... .+| ..+.++++.+++.. +.++.+.++. .+-++.+.+.|+|+| ++++.+....
T Consensus 97 ~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t-------~~ea~~a~~~Gad~i~~~v~g~~~~~~ 169 (234)
T 1yxy_A 97 LAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIST-------FDEGLVAHQAGIDFVGTTLSGYTPYSR 169 (234)
T ss_dssp HHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSS-------HHHHHHHHHTTCSEEECTTTTSSTTSC
T ss_pred HHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCC-------HHHHHHHHHcCCCEEeeeccccCCCCc
Confidence 1232211 123 24567777777665 6777776432 233777889999999 7787654321
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.. ...+++.++++++. ++||+++|||+|++++.++++ .|||+|++||+++. |+
T Consensus 170 -~~-~~~~~~~i~~~~~~-~ipvia~GGI~s~~~~~~~~~-~Gad~v~vGsal~~-p~ 222 (234)
T 1yxy_A 170 -QE-AGPDVALIEALCKA-GIAVIAEGKIHSPEEAKKIND-LGVAGIVVGGAITR-PK 222 (234)
T ss_dssp -CS-SSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHT-TCCSEEEECHHHHC-HH
T ss_pred -CC-CCCCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCEEEEchHHhC-hH
Confidence 11 24689999999988 999999999999999999998 59999999999887 64
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.2e-11 Score=107.36 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=96.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.+++++. +|.++++++ .+.|+|+|.+. ||.+...+...|+..+++++.+.++. +.+++||.+|+|.+..
T Consensus 22 ~g~i~~~---~~~~~a~~~--~~~Ga~~I~~l--~p~~~~~~~~~G~~~~~~~~~i~~I~----~~~~iPv~~k~r~g~~ 90 (305)
T 2nv1_A 22 GGVIMDV---INAEQAKIA--EEAGAVAVMAL--ERVPADIRAAGGVARMADPTIVEEVM----NAVSIPVMAKARIGHI 90 (305)
T ss_dssp TCEEEEE---SSHHHHHHH--HHTTCSEEEEC--CC-------CCCCCCCCCHHHHHHHH----HHCSSCEEEEECTTCH
T ss_pred CCeeecC---CHHHHHHHH--HHcCCCEEEEc--CCCcchhhhccCcccCCCHHHHHHHH----HhCCCCEEecccccch
Confidence 3465533 555544433 45699999544 36655555556777888888777664 4468999999998531
Q ss_pred ---------------------h--------------------hhHHHHHHHHHHcCCCEEEEecc--------------C
Q 023070 89 ---------------------L--------------------QDTIKYAKMLEDAGCSLLAVHGR--------------T 113 (287)
Q Consensus 89 ---------------------~--------------------~~~~~~a~~l~~~G~~~I~vh~r--------------t 113 (287)
. .+..+.. +..+.|+++|.++|. +
T Consensus 91 ~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~-~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt 169 (305)
T 2nv1_A 91 VEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEAT-RRIAEGASMLRTKGEPGTGNIVEAVRHMRK 169 (305)
T ss_dssp HHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHH-HHHHTTCSEEEECCCTTSCCTHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHH-HHHHCCCCEEEeccccCccchHHHHhhhhh
Confidence 0 0011222 223566776666431 1
Q ss_pred ------------CCCcCC--CCccccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 114 ------------RDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 114 ------------~~~~~~--~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
..+.+. ...+.+++.++++++.+++||+ ++|||.|++|+.++++ .|||+|++||+++..+
T Consensus 170 ~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~-~GadgV~vGsai~~~~ 245 (305)
T 2nv1_A 170 VNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSD 245 (305)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHH-TTCSCEEECGGGGGSS
T ss_pred hhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHH-cCCCEEEEcHHHHcCC
Confidence 000000 0024678899999988899999 9999999999999998 6999999999999644
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-11 Score=110.40 Aligned_cols=137 Identities=13% Similarity=0.090 Sum_probs=117.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.++|+ ..+.||+.|+|++||+ +++...++++++++.+ ++++.++.+.+|+.++++++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~ 210 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRA 210 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 8999998887 4577999999999874 4677788999999887 69999999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++.+++.|+++|- +.. .+.||+.++++++.+++||++++.+.|++++.++++...||.|++..+-++.++
T Consensus 211 ~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~ 280 (371)
T 2ovl_A 211 ARALAPFDLHWIE-------EPT---IPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYT 280 (371)
T ss_dssp HHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHH
T ss_pred HHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHH
Confidence 9999999999873 211 146899999999999999999999999999999999888999999877777776
Q ss_pred chhch
Q 023070 176 LFAGF 180 (287)
Q Consensus 176 lf~~~ 180 (287)
-+.++
T Consensus 281 ~~~~i 285 (371)
T 2ovl_A 281 TFRKV 285 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=99.25 E-value=9.4e-11 Score=109.19 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=122.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+...+++.+.++|+. ++.||+.|+|++||| +++...++++++++.+ ++++.++.
T Consensus 133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDa 197 (378)
T 2qdd_A 133 TPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDV 197 (378)
T ss_dssp CCEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEEC
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 34566667766899999998874 567999999999886 4678889999999987 68999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+|+.++++++++.++ .|+ +| ++ .. + ||+.++++++.+++||++++.+.+++++.++++...+|.
T Consensus 198 n~~~~~~~a~~~~~~l~-~~i-~i-------Eq--P~--~-d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~ 263 (378)
T 2qdd_A 198 NRAWTPAIAVEVLNSVR-ARD-WI-------EQ--PC--Q-TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEG 263 (378)
T ss_dssp TTCCCHHHHHHHHTSCC-CCC-EE-------EC--CS--S-SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHhC-CCc-EE-------Ec--CC--C-CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCE
Confidence 99999999999999998 888 66 22 12 3 899999999999999999999999999999999889999
Q ss_pred EEEehhhhhCccchhch
Q 023070 164 VLSAESLLENPALFAGF 180 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~ 180 (287)
|++-.+.++.++-+.++
T Consensus 264 v~ik~~~~GGi~~~~~i 280 (378)
T 2qdd_A 264 VKIKPNRVGGLTRARQI 280 (378)
T ss_dssp EEECHHHHTSHHHHHHH
T ss_pred EEecccccCCHHHHHHH
Confidence 99988888887755544
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-11 Score=109.55 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=120.1
Q ss_pred CCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 9 RPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.|+-..++ ..++++|.++|+ ..+.||+.|+|++|| .+++. .++++++++++ ++++.++.+
T Consensus 153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 45555554 368999999887 456799999999875 24677 89999999877 699999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+|+.+++.++++.+++.|+++|. +.. .+.+|+..+++++.+++||++++.+.+++++.++++...||.|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 286 (388)
T 2nql_A 217 WNQTPERALELIAEMQPFDPWFAE-------APV---WTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIV 286 (388)
T ss_dssp SCSCHHHHHHHHHHHGGGCCSCEE-------CCS---CTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEE-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999999873 211 1468999999999999999999999999999999998889999
Q ss_pred EEehhhhhCccchhch
Q 023070 165 LSAESLLENPALFAGF 180 (287)
Q Consensus 165 miGR~~l~nP~lf~~~ 180 (287)
++-..- +.++-+.++
T Consensus 287 ~ik~~~-GGit~~~~i 301 (388)
T 2nql_A 287 QPEMGH-KGITNFIRI 301 (388)
T ss_dssp CCCHHH-HCHHHHHHH
T ss_pred EecCCC-CCHHHHHHH
Confidence 997777 776644433
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.4e-11 Score=108.51 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|..++....+..++++|+|.|.|+..+. .++.+.++++.+++.. ++||.+|-- .+.+.
T Consensus 96 g~~~~~~e~~~~a~~aGvdvI~id~a~G---------------~~~~~~e~I~~ir~~~~~~~Vi~G~V------~T~e~ 154 (361)
T 3r2g_A 96 GCTENELQRAEALRDAGADFFCVDVAHA---------------HAKYVGKTLKSLRQLLGSRCIMAGNV------ATYAG 154 (361)
T ss_dssp CSSHHHHHHHHHHHHTTCCEEEEECSCC---------------SSHHHHHHHHHHHHHHTTCEEEEEEE------CSHHH
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEeCCCC---------------CcHhHHHHHHHHHHhcCCCeEEEcCc------CCHHH
Confidence 3344444444446678999999985432 1345678888998876 799999721 22456
Q ss_pred HHHHHHcCCCEEEEe--ccCCCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 96 AKMLEDAGCSLLAVH--GRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 96 a~~l~~~G~~~I~vh--~rt~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.+.++|+|+|.|. +...... ..+.+.+.++.+.++++... |||++|||+++.|+.++|. .|||+||+||+++
T Consensus 155 A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa-~GAd~V~iGr~f~ 232 (361)
T 3r2g_A 155 ADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKALA-FGADFVMIGGMLA 232 (361)
T ss_dssp HHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHH-TTCSEEEESGGGT
T ss_pred HHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence 888999999999983 2111000 00112346777777776655 9999999999999999999 5999999999998
Q ss_pred hCccc
Q 023070 172 ENPAL 176 (287)
Q Consensus 172 ~nP~l 176 (287)
.....
T Consensus 233 ~t~Es 237 (361)
T 3r2g_A 233 GSAPT 237 (361)
T ss_dssp TBTTS
T ss_pred CCccC
Confidence 77653
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=106.20 Aligned_cols=147 Identities=10% Similarity=0.133 Sum_probs=123.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+..++++.+|+++.++|+ .++.||+.|+||+|. +++...++++++++.+ ++++.++.
T Consensus 129 ~~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDa 192 (369)
T 2p8b_A 129 EEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDV 192 (369)
T ss_dssp SCEECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CceeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 3456667888889999999887 457799999999873 4778889999999887 68999999
Q ss_pred cCCCChhhHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 84 RVFPNLQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 84 R~g~~~~~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+|+.++++ ++++.+++.|+++|. +.. .+.||+..+++++.+++||++++.+.+++++.++++...+|
T Consensus 193 n~~~~~~~a~~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d 262 (369)
T 2p8b_A 193 NQGWKNSANTLTALRSLGHLNIDWIE-------QPV---IADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAAD 262 (369)
T ss_dssp TTTTBSHHHHHHHHHTSTTSCCSCEE-------CCB---CTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEE-------CCC---CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCC
Confidence 9999999999 999999999999873 211 14689999999999999999999999999999999988899
Q ss_pred EEEEehhhhhCccchhc
Q 023070 163 GVLSAESLLENPALFAG 179 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~ 179 (287)
.|++-.+-++.+.-+.+
T Consensus 263 ~v~ik~~~~GGit~~~~ 279 (369)
T 2p8b_A 263 KVNIKLMKCGGIYPAVK 279 (369)
T ss_dssp EEEECHHHHTSHHHHHH
T ss_pred EEEeecchhCCHHHHHH
Confidence 99998777766654443
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-10 Score=105.78 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=123.9
Q ss_pred CCCCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCCh-HHHHHHHHHHhhcc--CCcEEE
Q 023070 7 EDRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL-PLVKSLVEKLALNL--NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~-~~~~~iv~~v~~~~--~~pv~v 81 (287)
+..|+-..+. +.+++++.++|+ ..+.||+.|+|++ ||. |+ ++ +...+++++|++.+ ++++.+
T Consensus 132 ~~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~v 198 (401)
T 2hzg_A 132 HGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMV 198 (401)
T ss_dssp CCBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 3456655554 679999999887 4567999999996 664 33 45 77889999999887 689999
Q ss_pred EecCCC--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHHHh
Q 023070 82 KIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 82 KiR~g~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+.+.+| +.++++++++.+++.|+++|- +.. .+.||+..+++++ .+++||++++.+.+++++.++++.
T Consensus 199 Dan~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~ 268 (401)
T 2hzg_A 199 DVGQIFGEDVEAAAARLPTLDAAGVLWLE-------EPF---DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDY 268 (401)
T ss_dssp ECTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CCS---CTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHC
Confidence 999999 999999999999999999873 211 1468999999999 899999999999999999999998
Q ss_pred cCccEEEEehhhhhCccchhch
Q 023070 159 TGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~ 180 (287)
..||.|++-..-++.++-+.++
T Consensus 269 ~~~d~v~ik~~~~GGit~~~~i 290 (401)
T 2hzg_A 269 GRIGFIQIDCGRIGGLGPAKRV 290 (401)
T ss_dssp SCCSEEEECHHHHTSHHHHHHH
T ss_pred CCCCEEEeCcchhCCHHHHHHH
Confidence 8899999988777777654433
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-10 Score=103.36 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+++++.++|+. ++.||+.|.|++|++. +| ...+++...++++++++++ ++++.++.+-+|+.+++++
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~ 218 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 218 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 689999998874 5679999999999864 22 3458899999999999977 6899999999999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+++.+++.|+++|- +. . .+.+|+..+++++.+++||++.+.+.+ ++++.++++...+|.|++--.-.+.
T Consensus 219 ~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 288 (382)
T 1rvk_A 219 LGRGLEKLGFDWIE-------EP--M-DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGG 288 (382)
T ss_dssp HHHHHHTTTCSEEE-------CC--S-CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTS
T ss_pred HHHHHHhcCCCEEe-------CC--C-ChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCC
Confidence 99999999999873 21 1 136899999999999999999999999 9999999998889999996555554
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
..
T Consensus 289 it 290 (382)
T 1rvk_A 289 IT 290 (382)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=104.53 Aligned_cols=97 Identities=12% Similarity=0.264 Sum_probs=83.0
Q ss_pred EEEEecCCCCh------hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 79 VSCKIRVFPNL------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 79 v~vKiR~g~~~------~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
..||++.||.. .++.++++.+++.|++.|+++.++...... ..+++.+++++ .+++||+++|||++++++
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~---~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~ 88 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENS---GENLPVLEKLS-EFAEHIQIGGGIRSLDYA 88 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHCC---CTTHHHHHHGG-GGGGGEEEESSCCSHHHH
T ss_pred EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccCC---chhHHHHHHHH-hcCCcEEEECCCCCHHHH
Confidence 56788887632 478899999999999999999876542221 46789999998 789999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhch
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.++++ .|||+|++|++++.||+++.++
T Consensus 89 ~~~~~-~Gad~V~lg~~~l~~p~~~~~~ 115 (241)
T 1qo2_A 89 EKLRK-LGYRRQIVSSKVLEDPSFLKSL 115 (241)
T ss_dssp HHHHH-TTCCEEEECHHHHHCTTHHHHH
T ss_pred HHHHH-CCCCEEEECchHhhChHHHHHH
Confidence 99998 5999999999999999998887
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=101.53 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=120.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+.+.+++++.++|+. .+.||+.|.|++|. +++...++++++++.+ ++++.++.
T Consensus 134 ~~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDa 197 (371)
T 2ps2_A 134 TRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDA 197 (371)
T ss_dssp SCEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 35577777888899999998874 56799999999873 4778889999999987 68999999
Q ss_pred cCCCChhhHHHHHHHH-HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 84 RVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l-~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+-+|+.++++++++.+ ++.|+ +|. + +.+ ||+..+++++.+++||++.+.+.+++++.++++...||
T Consensus 198 n~~~~~~~a~~~~~~l~~~~~i-~iE-------~----P~~-~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d 264 (371)
T 2ps2_A 198 NGKLSVETALRLLRLLPHGLDF-ALE-------A----PCA-TWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAE 264 (371)
T ss_dssp TTBCCHHHHHHHHHHSCTTCCC-EEE-------C----CBS-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCS
T ss_pred CCCcCHHHHHHHHHHHHhhcCC-cCc-------C----CcC-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence 9999999999999999 99998 762 1 113 89999999999999999999999999999999988899
Q ss_pred EEEEehhhhhCccchh
Q 023070 163 GVLSAESLLENPALFA 178 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~ 178 (287)
.|++--+-.+...-+.
T Consensus 265 ~v~ik~~~~GGit~~~ 280 (371)
T 2ps2_A 265 GIDLKISKAGGLTRGR 280 (371)
T ss_dssp EEEEEHHHHTSHHHHH
T ss_pred EEEechhhcCCHHHHH
Confidence 9999776666655333
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=110.39 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=100.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
+.+.+ |...+.+.++..+++.|+|.|.||..+| ++..+.++++.+++.. ++||.++-
T Consensus 247 V~aav-g~~~d~~era~aLveaGvd~I~Id~a~g---------------~~~~v~~~i~~i~~~~~~~~vi~g~------ 304 (511)
T 3usb_A 247 VGAAV-GVTADAMTRIDALVKASVDAIVLDTAHG---------------HSQGVIDKVKEVRAKYPSLNIIAGN------ 304 (511)
T ss_dssp CEEEE-CSSTTHHHHHHHHHHTTCSEEEEECSCT---------------TSHHHHHHHHHHHHHCTTSEEEEEE------
T ss_pred eeeee-eeccchHHHHHHHHhhccceEEeccccc---------------chhhhhhHHHHHHHhCCCceEEeee------
Confidence 44555 3345667777777889999999997654 3455778888888876 57888862
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCc-----CCCCccccHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEK-----DGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----~~~~~~~~~~~i~~i~---~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
-.+.+.++.+.++|+|+|.| |...... ..+.+.+++..+..++ +..++|||++|||+++.|+.+++. .||
T Consensus 305 v~t~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala-~GA 382 (511)
T 3usb_A 305 VATAEATKALIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALA-AGA 382 (511)
T ss_dssp ECSHHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH-TTC
T ss_pred eccHHHHHHHHHhCCCEEEE-CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-hCc
Confidence 12356688899999999998 2211100 0112245666666654 345799999999999999999998 599
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+||+++.-..
T Consensus 383 ~~V~vGs~~~~~~e 396 (511)
T 3usb_A 383 HVVMLGSMFAGVAE 396 (511)
T ss_dssp SEEEESTTTTTBTT
T ss_pred hhheecHHHhcCcc
Confidence 99999999865444
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=110.27 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHH
Q 023070 20 PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 20 ~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
.+...++..+++.|+|.|.+|+. .| .+....++++++++.+ ++||.++- +.+ .+.++.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~----------~G-----~~~~~~e~i~~i~~~~p~~pvi~g~--~~t----~e~a~~ 294 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTA----------HG-----HSRRVIETLEMIKADYPDLPVVAGN--VAT----PEGTEA 294 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCS----------CC-----SSHHHHHHHHHHHHHCTTSCEEEEE--ECS----HHHHHH
T ss_pred HhHHHHHHHHHHhCCCEEEEEec----------CC-----chHHHHHHHHHHHHHCCCceEEeCC--cCC----HHHHHH
Confidence 34444455567889999999863 12 3566778899999887 79998862 122 344678
Q ss_pred HHHcCCCEEEEeccCCC--C-c-CCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 99 LEDAGCSLLAVHGRTRD--E-K-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~--~-~-~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.++|+|+|.|.+.... . . ....+.+.+..+..+++ .+++|||++|||+++.|+.+++. .|||+|++||+++
T Consensus 295 l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala-~GAd~V~iGr~~l 373 (494)
T 1vrd_A 295 LIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALA-AGAESVMVGSIFA 373 (494)
T ss_dssp HHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred HHHcCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHH-cCCCEEEECHHHh
Confidence 88999999999432110 0 0 00012244555555544 36899999999999999999998 5999999999999
Q ss_pred hCccchhc
Q 023070 172 ENPALFAG 179 (287)
Q Consensus 172 ~nP~lf~~ 179 (287)
..|.+..+
T Consensus 374 ~~~e~~~~ 381 (494)
T 1vrd_A 374 GTEEAPGE 381 (494)
T ss_dssp TBTTSSSE
T ss_pred cCCcCCcc
Confidence 98887553
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-10 Score=96.33 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=112.4
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHHcCCCCEEEEe--ccCChh-hh-hcCccccccc--CChHHHHHHHHHHhhccCCcE
Q 023070 8 DRPLFVQFCANDP--EILLNAARRVEPYCDYVDIN--LGCPQR-IA-RRGNYGAFLM--DNLPLVKSLVEKLALNLNVPV 79 (287)
Q Consensus 8 ~~p~~~Qi~g~~~--~~~~~aA~~~~~g~d~IdiN--~gcP~~-~~-~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv 79 (287)
..++++.|.+.|| +.+.+.++.+++++|.|+++ ++||.- .. .....-.+|. .+.....++++++++.+++||
T Consensus 4 ~~~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv 83 (248)
T 1geq_A 4 DGSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPI 83 (248)
T ss_dssp TTEEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCE
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCE
Confidence 3568999999999 58888888654339999999 677762 00 0000000000 266777899999999888998
Q ss_pred EEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCC---------------------CC---------------------
Q 023070 80 SCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTR---------------------DE--------------------- 116 (287)
Q Consensus 80 ~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~---------------------~~--------------------- 116 (287)
.+....... .....++++.+.++|+++|++|.-.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~ 163 (248)
T 1geq_A 84 VLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLV 163 (248)
T ss_dssp EEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred EEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEE
Confidence 876421000 01125678888889999998874100 00
Q ss_pred -cCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 117 -KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 117 -~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
..+..+ +..++.++++++.+++||++.|||++++++.++++ .|+|+|.+|++++..
T Consensus 164 ~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~-~Gad~vivGsai~~~ 226 (248)
T 1geq_A 164 SLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLK-EGANGVVVGSALVKI 226 (248)
T ss_dssp CCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred ECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHH-cCCCEEEEcHHHHhh
Confidence 000011 12367888999888999999999999999999987 599999999998864
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-10 Score=104.21 Aligned_cols=130 Identities=21% Similarity=0.189 Sum_probs=95.5
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
..+..+++.|+|.|.|+.. .| .++.+.++++.+++..++||.++.- .+.+.++.+.++|
T Consensus 147 e~~~~lveaGvdvIvldta----------~G-----~~~~~~e~I~~ik~~~~i~Vi~g~V------~t~e~A~~a~~aG 205 (400)
T 3ffs_A 147 ERAKLLVEAGVDVIVLDSA----------HG-----HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEATKELIENG 205 (400)
T ss_dssp HHHHHHHHHTCSEEEECCS----------CC-----SBHHHHHHHHHHHTTCCCEEEEEEE------CSHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEeCC----------CC-----CcccHHHHHHHHHhcCCCeEEEeec------CCHHHHHHHHHcC
Confidence 3344456779999988642 11 4567788889998887899988621 2356788899999
Q ss_pred CCEEEEec------cCCCCcCCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 104 CSLLAVHG------RTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 104 ~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+|+|.+.. .++.. ...+.+++..+.++++. +++|||++|||.+++|+.+++. .|||+||+|++++.-+
T Consensus 206 AD~I~vG~g~Gs~~~tr~~--~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kala-lGAd~V~vGt~f~~t~ 282 (400)
T 3ffs_A 206 ADGIKVGIGPGSICTTRIV--AGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALA-VGASSVMIGSILAGTE 282 (400)
T ss_dssp CSEEEECC---------CC--SCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHT-TTCSEEEECGGGTTBT
T ss_pred CCEEEEeCCCCcCcccccc--cccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-cCCCEEEEChHHhcCC
Confidence 99999931 11211 11234677878877654 5899999999999999999998 5999999999999866
Q ss_pred cch
Q 023070 175 ALF 177 (287)
Q Consensus 175 ~lf 177 (287)
.-.
T Consensus 283 Es~ 285 (400)
T 3ffs_A 283 ESP 285 (400)
T ss_dssp TSS
T ss_pred CCC
Confidence 633
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.5e-10 Score=103.18 Aligned_cols=142 Identities=10% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCEEEEe-c-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 9 RPLFVQF-C-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 9 ~p~~~Qi-~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
.|+-..+ . +.+|+++++.++ .++.||+.|.|++|| +++...+++++|++.+ ++++.++.
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa 202 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA 202 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 5777777 5 689999999887 457799999999886 4677788899999886 68999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH-hhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-NALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~-~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+|+.+++.++++.+++.|+++|. +.. .+.|++.+++++ +.+++||++++.+.+++++.++++...+|
T Consensus 203 n~~~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d 272 (389)
T 3ozy_A 203 NQSLGRHDALAMLRILDEAGCYWFE-------EPL---SIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAID 272 (389)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCSEEE-------SCS---CTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCS
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999983 211 135899999999 99999999999999999999999988899
Q ss_pred EEEEehhhhhCccc
Q 023070 163 GVLSAESLLENPAL 176 (287)
Q Consensus 163 ~VmiGR~~l~nP~l 176 (287)
.|++--+-.+...-
T Consensus 273 ~v~ik~~~~GGit~ 286 (389)
T 3ozy_A 273 VLQADASRAGGITE 286 (389)
T ss_dssp EECCCTTTSSCHHH
T ss_pred EEEeCccccCCHHH
Confidence 99996655555543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=96.11 Aligned_cols=151 Identities=11% Similarity=0.160 Sum_probs=109.8
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC--
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV-- 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~-- 85 (287)
.++-+|++|.- ..+..+.++++.|+|-|-|| +...++|+++.++.+..... +-+.+.+|.+-
T Consensus 74 ~~~pl~vGGGI-rs~e~~~~~l~~GadkVii~--------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~ 138 (243)
T 4gj1_A 74 VSVNLQVGGGI-RSKEEVKALLDCGVKRVVIG--------------SMAIKDATLCLEILKEFGSEAIVLALDTILKEDY 138 (243)
T ss_dssp CCSEEEEESSC-CCHHHHHHHHHTTCSEEEEC--------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSE
T ss_pred cCCCeEecccc-ccHHHHHHHHHcCCCEEEEc--------------cccccCCchHHHHHhcccCceEEEEEEEEeCCCC
Confidence 35567887742 33445556778899999886 66788999999999887533 22333343322
Q ss_pred -----CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 023070 86 -----FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 86 -----g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l 156 (287)
+|. ..+..++++.+++.|+..|.+|...++++.. .+|++.++.+.+.. ++|||++||+.+.+|+.++
T Consensus 139 ~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~---G~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l- 214 (243)
T 4gj1_A 139 VVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQ---GVNVRLYKLIHEIFPNICIQASGGVASLKDLENL- 214 (243)
T ss_dssp EEC--------CCBHHHHHHHHHTTTCCEEEEEETTC--------CCCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-
T ss_pred EEEecCceecccchHHHHHHHHhhcCCcEEEeeeeccccccc---CCCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-
Confidence 332 2357899999999999999999988887655 37999999999876 7999999999999999875
Q ss_pred HhcCccEEEEehhhhhCccchhc
Q 023070 157 EETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
+ .+++||.+|++++.+-.=+.+
T Consensus 215 ~-~~~~gvivg~Al~~g~i~l~e 236 (243)
T 4gj1_A 215 K-GICSGVIVGKALLDGVFSVEE 236 (243)
T ss_dssp T-TTCSEEEECHHHHTTSSCHHH
T ss_pred H-ccCchhehHHHHHCCCCCHHH
Confidence 4 479999999999876554443
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-10 Score=104.94 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=98.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
..|+++.+.+.+..++++.+ .+.|+|.|.+| +.|.. ..++. ++...+-+..+++.+++||.+|- ..
T Consensus 155 g~~v~~~v~~~~~~e~a~~~--~~agad~i~i~-~~~~~----~~~~~-----~~~~~~~i~~l~~~~~~pvi~gg--i~ 220 (393)
T 2qr6_A 155 GEIVAVRVSPQNVREIAPIV--IKAGADLLVIQ-GTLIS----AEHVN-----TGGEALNLKEFIGSLDVPVIAGG--VN 220 (393)
T ss_dssp TSCCEEEECTTTHHHHHHHH--HHTTCSEEEEE-CSSCC----SSCCC-----C-----CHHHHHHHCSSCEEEEC--CC
T ss_pred CCeEEEEeCCccHHHHHHHH--HHCCCCEEEEe-CCccc----cccCC-----CcccHHHHHHHHHhcCCCEEECC--cC
Confidence 56788888876655544333 35689999887 33310 11221 11111224566666799999972 12
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCC--CCcCCCCccccHHHHHHHHhh-------CC---CcEEEecCCCCHHHHHHH
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTR--DEKDGKKFRADWNAIKAVKNA-------LR---IPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~--~~~~~~~~~~~~~~i~~i~~~-------~~---ipVi~nGgI~s~~da~~~ 155 (287)
+ .+.++.+.++|+|+|.| ++.. .......+.+.++.+.++++. ++ +|||++|||++..|+.++
T Consensus 221 t----~e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~ka 295 (393)
T 2qr6_A 221 D----YTTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKA 295 (393)
T ss_dssp S----HHHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHH
T ss_pred C----HHHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHH
Confidence 3 34477888999999999 4311 000112235677778777665 44 999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCcc
Q 023070 156 LEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~ 175 (287)
+. .|||+||+||+++..+.
T Consensus 296 la-lGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 296 IA-CGADAVVLGSPLARAEE 314 (393)
T ss_dssp HH-HTCSEEEECGGGGGSTT
T ss_pred HH-cCCCEEEECHHHHcCCC
Confidence 98 59999999999998886
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-09 Score=100.67 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=117.9
Q ss_pred CEEEEecCCCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC
Q 023070 10 PLFVQFCANDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~ 85 (287)
|+-.-+.+.+++.+.++|+ .++ .||+.|.|++||+ +++...++++++++.+ ++++.++.+.
T Consensus 133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 197 (370)
T 1nu5_A 133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQ 197 (370)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4444455678999998887 567 8999999999874 3566778888888876 5899999999
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+|+.++++++++.+++.|+++|. +.. .+.||+..+++++.+++||++.+.+.+++++.++++...+|.|+
T Consensus 198 ~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 267 (370)
T 1nu5_A 198 GWDEQTASIWIPRLEEAGVELVE-------QPV---PRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFS 267 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEE-------CCS---CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCcceEe-------CCC---CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999873 211 14689999999999999999999999999999999988899999
Q ss_pred EehhhhhCccchh
Q 023070 166 SAESLLENPALFA 178 (287)
Q Consensus 166 iGR~~l~nP~lf~ 178 (287)
+--.-.+...-+.
T Consensus 268 ik~~~~GGit~~~ 280 (370)
T 1nu5_A 268 LKLCNMGGIANTL 280 (370)
T ss_dssp ECHHHHTSHHHHH
T ss_pred EchhhcCCHHHHH
Confidence 9766666655433
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=105.53 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...++..++++|+|.|.||.. .| +++.+.+.++.+++.. ++||.+.. -.+.+.+
T Consensus 105 ~~~~~~~~~~~lieaGvd~I~idta----------~G-----~~~~~~~~I~~ik~~~p~v~Vi~G~------v~t~e~A 163 (366)
T 4fo4_A 105 AAPGNEERVKALVEAGVDVLLIDSS----------HG-----HSEGVLQRIRETRAAYPHLEIIGGN------VATAEGA 163 (366)
T ss_dssp SCTTCHHHHHHHHHTTCSEEEEECS----------CT-----TSHHHHHHHHHHHHHCTTCEEEEEE------ECSHHHH
T ss_pred cChhHHHHHHHHHhCCCCEEEEeCC----------CC-----CCHHHHHHHHHHHHhcCCCceEeee------eCCHHHH
Confidence 3444444444567889999999842 01 4566778888888876 78887752 1234567
Q ss_pred HHHHHcCCCEEEEeccCCCCc-----CCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 97 KMLEDAGCSLLAVHGRTRDEK-----DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~-----~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
+.+.++|+|+|.+ |...... ....+.+++..+.++++ .+++|||+.|||.++.|+.+++. .|||+||+|+
T Consensus 164 ~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala-~GAd~V~vGs 241 (366)
T 4fo4_A 164 RALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIA-AGASCVMVGS 241 (366)
T ss_dssp HHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEEST
T ss_pred HHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECh
Confidence 8889999999999 2111100 00112456677776664 46899999999999999999999 5999999999
Q ss_pred hhhhCccchh
Q 023070 169 SLLENPALFA 178 (287)
Q Consensus 169 ~~l~nP~lf~ 178 (287)
.++.-+.-..
T Consensus 242 ~f~~t~Esp~ 251 (366)
T 4fo4_A 242 MFAGTEEAPG 251 (366)
T ss_dssp TTTTBTTSSS
T ss_pred HhhcCCCCCc
Confidence 9998666433
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-10 Score=103.54 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=119.1
Q ss_pred CCCEEEE-ec-C-C-------CHHHHHHHHH-HHcCCCCEEEEec------cC----ChhhhhcCccccccc-CChHHHH
Q 023070 8 DRPLFVQ-FC-A-N-------DPEILLNAAR-RVEPYCDYVDINL------GC----PQRIARRGNYGAFLM-DNLPLVK 65 (287)
Q Consensus 8 ~~p~~~Q-i~-g-~-------~~~~~~~aA~-~~~~g~d~IdiN~------gc----P~~~~~~~~~G~~l~-~~~~~~~ 65 (287)
..|+... +. | . ++++|.++|+ .++.||+.|.|+. |+ |..| ..||++.. ++++...
T Consensus 129 ~vp~y~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~---~~~GG~~~~~~~~~~~ 205 (410)
T 2gl5_A 129 KLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRN---RNYSGLLLADQLKMGE 205 (410)
T ss_dssp SEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCC---GGGGSCCCHHHHHHHH
T ss_pred ceeEeEecccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccccccc---ccccCccchhHHHHHH
Confidence 3466555 65 4 4 8999998887 4577999999996 66 3332 25777664 5778889
Q ss_pred HHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 66 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 66 ~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+++++|++++ ++++.++..-+|+.++++++++.+++.|+++|. +.. .+.+|+..+++++.+++||++.
T Consensus 206 e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~iPIa~d 275 (410)
T 2gl5_A 206 ARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE-------EPI---HPLNSDNMQKVSRSTTIPIATG 275 (410)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------CSS---CSSCHHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEE-------CCC---ChhhHHHHHHHHhhCCCCEEec
Confidence 9999999977 689999999899999999999999999988763 111 1368999999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEE
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+.+++++.++++...+|.|++
T Consensus 276 E~~~~~~~~~~~i~~~~~d~v~i 298 (410)
T 2gl5_A 276 ERSYTRWGYRELLEKQSIAVAQP 298 (410)
T ss_dssp TTCCTTHHHHHHHHTTCCSEECC
T ss_pred CCcCCHHHHHHHHHcCCCCEEec
Confidence 99999999999999878999987
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=100.24 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=118.1
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~ 85 (287)
.|+-.++.+.+|+++.+.|+ .++.||+.|.+++||+ +++...++++++++.+ ++++.++.+.
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan~ 194 (366)
T 1tkk_A 130 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 194 (366)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 45567788889999988887 4567999999998862 4677788899998876 6899999999
Q ss_pred CCChhhHHHHHHHHHH--cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~--~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+|+.++++++++.+++ .|+++|- +.. .+.||+..+++++.+++||++.+.+.+++++.++++...+|.
T Consensus 195 ~~~~~~a~~~~~~l~~~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~ 264 (366)
T 1tkk_A 195 GWRPKEAVTAIRKMEDAGLGIELVE-------QPV---HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADL 264 (366)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred CCCHHHHHHHHHHHhhcCCCceEEE-------CCC---CcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCE
Confidence 9999999999999999 8887772 211 146899999999999999999999999999999999888999
Q ss_pred EEEehhhhhCcc
Q 023070 164 VLSAESLLENPA 175 (287)
Q Consensus 164 VmiGR~~l~nP~ 175 (287)
|++--.-.+...
T Consensus 265 v~ik~~~~GGit 276 (366)
T 1tkk_A 265 INIKLMKAGGIS 276 (366)
T ss_dssp EEECHHHHTSHH
T ss_pred EEeehhhhcCHH
Confidence 999655555544
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-09 Score=101.65 Aligned_cols=141 Identities=12% Similarity=0.070 Sum_probs=116.9
Q ss_pred Eec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCCh
Q 023070 14 QFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 89 (287)
Q Consensus 14 Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~ 89 (287)
.+. +.+++++.++|+ ..+.||+.|.|+.|+. .++...++++++++.+ ++++.++.+.+|+.
T Consensus 143 ~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 207 (391)
T 2qgy_A 143 WSDLKKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDL 207 (391)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCH
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCH
Confidence 344 578999999887 4567999999997621 1688889999999877 69999999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
++++++++.+++.|+++|- +.. .+.+|+..+++++.+++||++.+.+.+++++.++++...+|.|++-..
T Consensus 208 ~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 277 (391)
T 2qgy_A 208 DQTKSFLKEVSSFNPYWIE-------EPV---DGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDIS 277 (391)
T ss_dssp HHHHHHHHHHGGGCCSEEE-------CSS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred HHHHHHHHHHHhcCCCeEe-------CCC---ChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcc
Confidence 9999999999999999873 211 146899999999999999999999999999999999888999999766
Q ss_pred hhhCccchhc
Q 023070 170 LLENPALFAG 179 (287)
Q Consensus 170 ~l~nP~lf~~ 179 (287)
-.+.+.-+.+
T Consensus 278 ~~GGit~~~~ 287 (391)
T 2qgy_A 278 GMGGLIDIIE 287 (391)
T ss_dssp TSSCHHHHHH
T ss_pred hhCCHHHHHH
Confidence 6666654433
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=102.24 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChh-h-hhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhh
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQR-I-ARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQD 91 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~-~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~ 91 (287)
+.+++++.++|+ ..+.||+.|.|+.||+.. . .....||++..++++...+++++|++.+ ++++.++.+-+|+.++
T Consensus 135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~ 214 (392)
T 2poz_A 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDE 214 (392)
T ss_dssp CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 468999988887 457799999999987431 0 0012466666678899999999999977 6899999998999999
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++++.+++.|+++|- +.. .+.||+..+++++.+++||++.+.+.+++++.++++...+|.|++
T Consensus 215 a~~~~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 279 (392)
T 2poz_A 215 TIRFCRKIGELDICFVE-------EPC---DPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQP 279 (392)
T ss_dssp HHHHHHHHGGGCEEEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred HHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 99999999999988763 111 135899999999999999999999999999999999878999987
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.8e-09 Score=92.58 Aligned_cols=160 Identities=14% Similarity=0.226 Sum_probs=109.9
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHH-cCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cC
Q 023070 8 DRPLFVQFCANDP--EILLNAARRV-EPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LN 76 (287)
Q Consensus 8 ~~p~~~Qi~g~~~--~~~~~aA~~~-~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~ 76 (287)
...++.-|...|| +.+.+.++.+ +.|+|.|||. |.-|. +.+.+-. -.+|. -+.+.+.++++++++. .+
T Consensus 17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~-~~AL~~G~~~~~~~~~v~~ir~~~~~ 95 (267)
T 3vnd_A 17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGAN-LRSLAAGTTSSDCFDIITKVRAQHPD 95 (267)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 4568888888888 9999999865 5699999998 55565 1222111 00111 3567788999999987 78
Q ss_pred CcEEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEecc--------------------------CC-----------CC
Q 023070 77 VPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR--------------------------TR-----------DE 116 (287)
Q Consensus 77 ~pv~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~-----------~~ 116 (287)
+|+.+-. .++. .....|++.+.++|++.++++.- |. .+
T Consensus 96 ~Pivlm~--Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~g 173 (267)
T 3vnd_A 96 MPIGLLL--YANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEG 173 (267)
T ss_dssp CCEEEEE--CHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCS
T ss_pred CCEEEEe--cCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCC
Confidence 9987652 1111 12356888888888888888431 10 00
Q ss_pred ------cCCCCc-----c-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ------KDGKKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ------~~~~~~-----~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+| + ...+.++++++.+++||++.|||++++++.+.+. .|||+|.+|++++
T Consensus 174 fvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~-~gADgvVVGSaiv 239 (267)
T 3vnd_A 174 YTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIK-AGAAGAISGSAVV 239 (267)
T ss_dssp CEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred cEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 011111 1 1247789999888999999999999999998887 4999999999886
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.3e-09 Score=93.21 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=96.8
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
..|+++.+.+ .+.|+ ..+.|+++|+++.++|...... .|..+.+.++.+ +.+++.+++|+.++.+.+
T Consensus 21 ~~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~--~G~~~~~~~~~i----~~i~~~~~~Pvi~~~~~~ 88 (297)
T 2zbt_A 21 KGGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADIRAQ--GGVARMSDPKII----KEIMAAVSIPVMAKVRIG 88 (297)
T ss_dssp TTEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHHHHT--TCCCCCCCHHHH----HHHHTTCSSCEEEEEETT
T ss_pred hCCeeeeech------HHHHHHHHHCCCcEEEeccccchHHHhh--cCCccCCCHHHH----HHHHHhcCCCeEEEeccC
Confidence 4578877754 33444 3456999999987776643222 255566676654 456666789998876543
Q ss_pred CC------------------------------h----------hhHHHHHHHHHHcCCCEEEEeccCCCC----------
Q 023070 87 PN------------------------------L----------QDTIKYAKMLEDAGCSLLAVHGRTRDE---------- 116 (287)
Q Consensus 87 ~~------------------------------~----------~~~~~~a~~l~~~G~~~I~vh~rt~~~---------- 116 (287)
+. . -...+-+..+.+.|+++|.+||....+
T Consensus 89 ~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~ 168 (297)
T 2zbt_A 89 HFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHAR 168 (297)
T ss_dssp CHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHH
Confidence 20 0 001112233345555555555310000
Q ss_pred -----------c-CC------CCccccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 117 -----------K-DG------KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 117 -----------~-~~------~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
. .. ...+.+++.++++++.+++||+ +.|||.|++++.++++ .|||+|++|++++..
T Consensus 169 ~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~-aGadgvvvGsai~~~ 244 (297)
T 2zbt_A 169 TMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMH-LGMDGVFVGSGIFKS 244 (297)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHH-TTCSEEEECGGGGGS
T ss_pred HHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHH-cCCCEEEEchHHhCC
Confidence 0 00 0023467889999988889998 9999999999999998 599999999999853
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=96.93 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCccc-ccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G-~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|+++++ +|.+|+...+.++. ++.|+++|.|.-+|..+ +.++.| ..|....+.+.+|-.++....+.++.|.
T Consensus 78 ~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k--~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~ 155 (295)
T 1xg4_A 78 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK--RSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIM 155 (295)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSC--CCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEE
T ss_pred CCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCc--ccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 47999999 88899999998884 56699999999988422 223333 4466555666665555555556677777
Q ss_pred ecCCC----ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC--CCHHHHHHHH
Q 023070 83 IRVFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMEDVQKCL 156 (287)
Q Consensus 83 iR~g~----~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI--~s~~da~~~l 156 (287)
-|... ..+++++-++.++++|++.|.+++. .+++.++++.+.+++|+++|.-. .++..-.+-|
T Consensus 156 aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL 224 (295)
T 1xg4_A 156 ARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI-----------TELAMYRQFADAVQVPILANITEFGATPLFTTDEL 224 (295)
T ss_dssp EEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC-----------CSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHH
T ss_pred EecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC-----------CCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHH
Confidence 77643 2368889999999999999999865 25688999999999999988754 2333333455
Q ss_pred HhcCccEEEEehhhh
Q 023070 157 EETGCEGVLSAESLL 171 (287)
Q Consensus 157 ~~~gad~VmiGR~~l 171 (287)
.+.|++.|++|.+++
T Consensus 225 ~~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 225 RSAHVAMALYPLSAF 239 (295)
T ss_dssp HHTTCSEEEESSHHH
T ss_pred HHcCCCEEEEChHHH
Confidence 568999999998876
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-09 Score=96.28 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=99.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
++.+.+ |..++++.++..+++. |+|.|.+++. .| ++..+.+.++.+++.. ++||.+|.-
T Consensus 108 ~v~~~~-g~~~~~~~~~~~l~~~~~g~~~i~i~~~----------~g-----~~~~~~~~i~~lr~~~~~~~vi~g~v-- 169 (351)
T 2c6q_A 108 HLAASS-GTGSSDFEQLEQILEAIPQVKYICLDVA----------NG-----YSEHFVEFVKDVRKRFPQHTIMAGNV-- 169 (351)
T ss_dssp TEEEEE-CSSHHHHHHHHHHHHHCTTCCEEEEECS----------CT-----TBHHHHHHHHHHHHHCTTSEEEEEEE--
T ss_pred eeEeec-CCChHHHHHHHHHHhccCCCCEEEEEec----------CC-----CcHHHHHHHHHHHHhcCCCeEEEEeC--
Confidence 456665 5567777777666665 8999888742 12 4556778899999888 899998731
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCC--CC-cC-CCCccccHHHHHHH---HhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTR--DE-KD-GKKFRADWNAIKAV---KNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~--~~-~~-~~~~~~~~~~i~~i---~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+.+.++.+.++|+|+|.|..... .. +. ...+.+.+..+..+ .+..++|||+.|||+++.|+.++|. .
T Consensus 170 ----~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAla-l 244 (351)
T 2c6q_A 170 ----VTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFG-A 244 (351)
T ss_dssp ----CSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH-T
T ss_pred ----CCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHH-c
Confidence 124567889999999998842110 00 00 00112334444444 3445899999999999999999999 5
Q ss_pred CccEEEEehhhhhCcc
Q 023070 160 GCEGVLSAESLLENPA 175 (287)
Q Consensus 160 gad~VmiGR~~l~nP~ 175 (287)
|||+|++||.++.-+.
T Consensus 245 GA~~V~vG~~fl~~~E 260 (351)
T 2c6q_A 245 GADFVMLGGMLAGHSE 260 (351)
T ss_dssp TCSEEEESTTTTTBTT
T ss_pred CCCceeccHHHhcCcc
Confidence 9999999999986433
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-09 Score=99.06 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=110.1
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEec------cCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCCh
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINL------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 89 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~ 89 (287)
+++++.++|+ .++.||+.|.|+. |++... ...|....++++...+++++|++++ ++++.++.+-+|+.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~ 222 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL 222 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence 8999998887 4577999999996 664211 1122222356788889999999877 68999999989999
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++++++++.+++.|+++|- +.. .+.||+..+++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus 223 ~~ai~~~~~l~~~~i~~iE-------~P~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 223 VSAIQFAKAIEEFNIFFYE-------EIN---TPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp HHHHHHHHHHGGGCEEEEE-------CCS---CTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHHHHHHhhCCCEEe-------CCC---ChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999988763 211 1358899999999999999999999999999999998789999883
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=97.98 Aligned_cols=124 Identities=11% Similarity=0.105 Sum_probs=107.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
++++|.++|+ ..+.||+.|.|+.|- .+++...+++++|++.+ ++++.++.+-+|+.++++++
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~ 226 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRM 226 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 8999999887 457799999998751 25788889999999886 68999999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.|+++|. +.. .+.+|+..+++++.+++||++.+.+.+++++.++++...||.|++-
T Consensus 227 ~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 227 CRIFEPFNLVWIE-------EPL---DAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp HHHHGGGCCSCEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHhhCCCEEE-------CCC---CcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 9999999999873 211 1368999999999999999999999999999999998889999884
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=88.69 Aligned_cols=147 Identities=17% Similarity=0.223 Sum_probs=107.1
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 9 RPLFVQFCA-NDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
..+..+-.| .+.++.+..|++..+ +-+.|.|-.-. + --.++.|+....+..+.+.+. ++.|..-+
T Consensus 74 ~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~-------d--~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~- 142 (265)
T 1wv2_A 74 YTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLA-------D--QKTLFPNVVETLKAAEQLVKD-GFDVMVYT- 142 (265)
T ss_dssp SEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBS-------C--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE-
T ss_pred CEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeec-------C--ccccCcCHHHHHHHHHHHHHC-CCEEEEEe-
Confidence 345555555 588999999997755 56777776321 1 125677888777777776543 44444222
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+...+++++++.|++.+..++..... ..+-.+++.++.+++..++|||+.|||.+++|+..+++ .|||+|
T Consensus 143 -----~dd~~~akrl~~~G~~aVmPlg~pIGs---G~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Ame-LGAdgV 213 (265)
T 1wv2_A 143 -----SDDPIIARQLAEIGCIAVMPLAGLIGS---GLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAV 213 (265)
T ss_dssp -----CSCHHHHHHHHHSCCSEEEECSSSTTC---CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEE
T ss_pred -----CCCHHHHHHHHHhCCCEEEeCCccCCC---CCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEE
Confidence 122578999999999999777763221 22346899999999999999999999999999999999 599999
Q ss_pred EEehhhhh--Ccc
Q 023070 165 LSAESLLE--NPA 175 (287)
Q Consensus 165 miGR~~l~--nP~ 175 (287)
++|+++.. ||.
T Consensus 214 lVgSAI~~a~dP~ 226 (265)
T 1wv2_A 214 LMNTAIAHAKDPV 226 (265)
T ss_dssp EESHHHHTSSSHH
T ss_pred EEChHHhCCCCHH
Confidence 99999853 454
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-09 Score=97.31 Aligned_cols=140 Identities=14% Similarity=0.210 Sum_probs=114.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+...++..+++.+.++|+ .++.||+.|.|+.|+ +++...+++++|++.+ ++++.++.+
T Consensus 134 ~vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan 197 (397)
T 2qde_A 134 RIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDIN 197 (397)
T ss_dssp SEEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECT
T ss_pred CcceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 345555554478999998887 456799999999762 4677788999999876 689999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.++++++++.+++.|+++|- +.- .+.+|+..+++++.+++||++.+.+.+++++.++++...+|.|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 267 (397)
T 2qde_A 198 GAWTYDQALTTIRALEKYNLSKIE-------QPL---PAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGL 267 (397)
T ss_dssp TCCCHHHHHHHHHHHGGGCCSCEE-------CCS---CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 899999999999999999999873 211 1368999999999999999999999999999999998889999
Q ss_pred EEehhhhhC
Q 023070 165 LSAESLLEN 173 (287)
Q Consensus 165 miGR~~l~n 173 (287)
++--.-.+.
T Consensus 268 ~ik~~~~GG 276 (397)
T 2qde_A 268 MIKTQKAGG 276 (397)
T ss_dssp EECHHHHTS
T ss_pred EEeccccCC
Confidence 985444433
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-10 Score=96.66 Aligned_cols=89 Identities=19% Similarity=0.329 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.++++|++.|+++..+.... ....+++.++++++.+++||+++|||++++++.++++ .|||+|++|++
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~-~Gad~V~lg~~ 105 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINTA 105 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc---CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEChH
Confidence 4788999999999999999997654321 1246788899999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+++.++..
T Consensus 106 ~l~~p~~~~~~~~ 118 (253)
T 1thf_D 106 AVENPSLITQIAQ 118 (253)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhChHHHHHHHH
Confidence 9999998887653
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=91.93 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
+.|+++.+.+.+++++.+.++.+ +.|++.|++++.||.. .+.++.+++.. ++++.+-
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~-- 68 (205)
T 1wa3_A 9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAG-- 68 (205)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEE--
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEec--
Confidence 46899999999999999998865 4589999999987632 23455555443 2333332
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCC-------------------CCc-------------CCCC-ccccHHHHHH
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------------------DEK-------------DGKK-FRADWNAIKA 131 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~-------------------~~~-------------~~~~-~~~~~~~i~~ 131 (287)
.-.+.+ -++.+.+.|+|+| +++... ... ...+ ....++.+++
T Consensus 69 ~v~~~~----~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~ 143 (205)
T 1wa3_A 69 TVTSVE----QCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKA 143 (205)
T ss_dssp SCCSHH----HHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHH
T ss_pred ccCCHH----HHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHH
Confidence 111222 2455566788877 654432 000 0000 0123567888
Q ss_pred HHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 132 VKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 132 i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+++.+ ++||++.|||+ ++++.++++ .|+|+|.+|++++.
T Consensus 144 l~~~~~~~pvia~GGI~-~~~~~~~~~-~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 144 MKGPFPNVKFVPTGGVN-LDNVCEWFK-AGVLAVGVGSALVK 183 (205)
T ss_dssp HHTTCTTCEEEEBSSCC-TTTHHHHHH-HTCSCEEECHHHHC
T ss_pred HHHhCCCCcEEEcCCCC-HHHHHHHHH-CCCCEEEECccccC
Confidence 88877 89999999996 789999998 59999999999987
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.7e-09 Score=96.99 Aligned_cols=147 Identities=10% Similarity=0.046 Sum_probs=118.8
Q ss_pred CCCCEEEE-ecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 7 EDRPLFVQ-FCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Q-i~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
+..|+-.. +...+|+.+++.|+ .++.||+.|.|++|++-. + |+ ++++...+++++||+.+ ++++.++
T Consensus 166 ~~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~----d--g~---~~~~~die~v~avReavG~d~~L~vD 236 (412)
T 3stp_A 166 DRIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK----D--GM---PGMRENLKRVEAVREVIGYDNDLMLE 236 (412)
T ss_dssp SSEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34566555 45578999999888 457799999999987521 1 22 45677888999999887 6899999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+-+|+.++++++++.+++.|+.+|- +.-. +.|++.++++++.+++||++.+.+.++.++.++++...+|
T Consensus 237 aN~~~~~~~Ai~~~~~Le~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D 306 (412)
T 3stp_A 237 CYMGWNLDYAKRMLPKLAPYEPRWLE-------EPVI---ADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVS 306 (412)
T ss_dssp CTTCSCHHHHHHHHHHHGGGCCSEEE-------CCSC---TTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---cccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999883 2111 3588999999999999999999999999999999987899
Q ss_pred EEEEehhhhh
Q 023070 163 GVLSAESLLE 172 (287)
Q Consensus 163 ~VmiGR~~l~ 172 (287)
.|++--+-.+
T Consensus 307 ~v~ik~~~~G 316 (412)
T 3stp_A 307 VLQYDTNRVG 316 (412)
T ss_dssp EECCCHHHHT
T ss_pred EEecChhhcC
Confidence 9988544443
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-08 Score=94.40 Aligned_cols=123 Identities=9% Similarity=0.088 Sum_probs=105.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.++|+ .++.||+.|.|++|+ .+++...+++++|++.+ ++++.+..+-+|+.++++++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~ 209 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTK 209 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHH
Confidence 8999998887 457799999999876 24577789999999987 68999999989999999999
Q ss_pred HHHHHH--cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 96 AKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 96 a~~l~~--~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++ .++.+|- +.. .+.||+..+++++.+ ++||++.+.+ +++++.++++...+|.|++.
T Consensus 210 ~~~l~~~g~~i~~iE-------qP~---~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 210 LVAIREAGHDLLWVE-------DPI---LRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp HHHHHHTTCCCSEEE-------SCB---CTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHhcCCCceEEe-------CCC---CCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 7777652 211 135899999999999 9999999999 99999999998889999997
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-09 Score=97.64 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=119.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccc-cccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~-~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
.+|+++++.|+ .++.||..|.++.|+|.... .|. ...++++...+++++||+.+ ++++.++.+-+|+.+++.
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~----~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~ 220 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR----GGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAI 220 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT----CCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc----cCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHH
Confidence 68999999887 56789999999999986421 222 12235677888999999887 589999999899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++++.+++.|+.+|. +. . .+.+++.++++++.+++||++.+.+.++.++.++++...+|.|++--+-.+.
T Consensus 221 ~~~~~Le~~~i~~iE-------eP--~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GG 290 (433)
T 3rcy_A 221 RLGQAIEPYSPLWYE-------EP--V-PPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGG 290 (433)
T ss_dssp HHHHHHGGGCCSEEE-------CC--S-CTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTH
T ss_pred HHHHHhhhcCCCEEE-------CC--C-ChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCC
Confidence 999999999999884 11 1 1357899999999999999999999999999999998789999987665555
Q ss_pred ccchhc
Q 023070 174 PALFAG 179 (287)
Q Consensus 174 P~lf~~ 179 (287)
..-..+
T Consensus 291 it~~~k 296 (433)
T 3rcy_A 291 IWEMKK 296 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 543333
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=95.75 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|.++..+.... ....+++.++++++.+++||+++|||++++++.++++ .|||+|++|++
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~-~Gad~V~lg~~ 106 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSA 106 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 4788999999999999999997654321 1245788899999999999999999999999999998 48999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+++.++..
T Consensus 107 ~l~~p~~~~~~~~ 119 (252)
T 1ka9_F 107 AVRRPELIRELAD 119 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 9999998887653
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=96.32 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=111.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEec----cCChhhhhcCccccccc--CChHHHHHHHHHHhhcc--CCcEEEEecCCCCh
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINL----GCPQRIARRGNYGAFLM--DNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 89 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~----gcP~~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~ 89 (287)
+|+.+.+.|+ .++.||+.|.++. |+.... ||+.+. ++++...+++++|++++ ++++.++..-+|+.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~-----~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRD-----FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSC-----SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCC-----cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 7999988887 5577999999998 653221 555555 47788899999999876 58899999889999
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++++++++.+++.|+++|- +.. .+.||+..+++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus 224 ~~a~~~~~~l~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 291 (410)
T 2qq6_A 224 PSSIRFARAMEPFGLLWLE-------EPT---PPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMPD 291 (410)
T ss_dssp HHHHHHHHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred HHHHHHHHHHhhcCCCeEE-------CCC---ChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecC
Confidence 9999999999999999874 111 1367999999999999999999999999999999998789999873
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=95.49 Aligned_cols=124 Identities=11% Similarity=0.082 Sum_probs=106.8
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+.|+ ..+.||+.|.|+.|. .+++...+++++|++.+ ++++.++.+-+|+.++++++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~ 239 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRM 239 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 8999998887 457799999999763 35788889999999886 68999999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.|+++|- +.. .+.+|+..+++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus 240 ~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 240 GRKMEQFNLIWIE-------EPL---DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp HHHHGGGTCSCEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHcCCceee-------CCC---ChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999873 211 1368999999999999999999999999999999998889999884
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=96.22 Aligned_cols=135 Identities=18% Similarity=0.238 Sum_probs=108.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEec------cCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCCh
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINL------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL 89 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~ 89 (287)
++++|.++|+ .++.||+.|.|+. |++.. +...|....++++...+++++|++++ ++++.++..-+|+.
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~---s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 228 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQ---QNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT 228 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSC---SCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcccc---CcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 8999998887 4577999999996 54311 11112222346678889999999876 68999999989999
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++++++.+++.|+++|- +.. .+.+|+..+++++.+++||++.+.+.+++++.++++...+|.|++
T Consensus 229 ~~a~~~~~~l~~~~i~~iE-------~P~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 295 (407)
T 2o56_A 229 TSAIQFGRMIEELGIFYYE-------EPV---MPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQP 295 (407)
T ss_dssp HHHHHHHHHHGGGCCSCEE-------CSS---CSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHHHHhcCCCEEe-------CCC---ChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 9999999999999999873 111 136899999999999999999999999999999999878999987
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=95.52 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=120.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+-..+.+.+|+++++.++ .++.||..|.| .|+|.... .....+++...+++++||+.+ ++++.+..
T Consensus 113 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~avG~d~~L~vDa 185 (405)
T 3rr1_A 113 DKMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAFGNTVEFGLDF 185 (405)
T ss_dssp SCEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTTGGGSEEEEEC
T ss_pred CceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHhCCCceEEEEC
Confidence 4567778888899999999887 56789999999 88874210 111234566788899999887 68999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.++++++++.+++.|+.+|. +.- .+.|++.++++++.+++||++.+.+.++.++.++++...+|.
T Consensus 186 N~~~~~~~A~~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~ 255 (405)
T 3rr1_A 186 HGRVSAPMAKVLIKELEPYRPLFIE-------EPV---LAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSI 255 (405)
T ss_dssp CSCBCHHHHHHHHHHHGGGCCSCEE-------CSS---CCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCe
Confidence 9999999999999999999999883 211 135788999999999999999999999999999999888999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|++--+-.+
T Consensus 256 v~~d~~~~G 264 (405)
T 3rr1_A 256 LQPDLSHAG 264 (405)
T ss_dssp ECCBTTTTT
T ss_pred EEEChhhcC
Confidence 998544443
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=94.86 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCEEEEecC--CCH---HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEE
Q 023070 9 RPLFVQFCA--NDP---EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 80 (287)
Q Consensus 9 ~p~~~Qi~g--~~~---~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~ 80 (287)
.|+-..+++ .+| +.+.+.|+ .++.||+.|.|+.|+ .+++...++++++++.+ ++++.
T Consensus 124 vp~~~~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~ 188 (382)
T 2gdq_A 124 IPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMI 188 (382)
T ss_dssp EEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred eeEEEEecccCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEE
Confidence 355444433 678 99988877 457799999999875 24677889999999877 68999
Q ss_pred EEecCCCChhhHHHHHHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 81 CKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 81 vKiR~g~~~~~~~~~a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
++.+-+|+.++++++++.+++. |+++|- +.. .+.+|+..+++++.+++||++.+.+.+++++.++++..
T Consensus 189 vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 258 (382)
T 2gdq_A 189 LDANQSYDAAAAFKWERYFSEWTNIGWLE-------EPL---PFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQR 258 (382)
T ss_dssp EECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CCS---CSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhhccCCeEEE-------CCC---CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC
Confidence 9999999999999999999999 888763 211 13689999999999999999999999999999999987
Q ss_pred CccEEEEe
Q 023070 160 GCEGVLSA 167 (287)
Q Consensus 160 gad~VmiG 167 (287)
.+|.|++-
T Consensus 259 ~~d~v~ik 266 (382)
T 2gdq_A 259 CLDIIQPD 266 (382)
T ss_dssp CCSEECCC
T ss_pred CCCEEecC
Confidence 89999873
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-08 Score=96.23 Aligned_cols=161 Identities=8% Similarity=0.063 Sum_probs=123.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhh--c----Cccccccc--CChHHHHHHHHHHhhcc--
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR--R----GNYGAFLM--DNLPLVKSLVEKLALNL-- 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~--~----~~~G~~l~--~~~~~~~~iv~~v~~~~-- 75 (287)
+..|+-..+.+.+|+++++.++ .++.||..|.+++|++..... . ..-|..+. +.++...+++++||+++
T Consensus 121 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~ 200 (401)
T 3sbf_A 121 DAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGN 200 (401)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCC
Confidence 4456666778899999999887 567899999999997531100 0 01122221 22567788899999887
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++++.++.+-+|+.++++++++.+++.|+.+|. +.- .+.+++.++++++.+++||++.+.+.+++++.++
T Consensus 201 d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~ 270 (401)
T 3sbf_A 201 QFHILHDVHERLFPNQAIQFAKEVEQYKPYFIE-------DIL---PPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSL 270 (401)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------CSS---CTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---ChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHH
Confidence 689999999999999999999999999998884 211 1357888899999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccch
Q 023070 156 LEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf 177 (287)
++...+|.|++--+-.+...-.
T Consensus 271 i~~~~~d~v~~k~~~~GGit~~ 292 (401)
T 3sbf_A 271 IANRRIDFIRCHVSQIGGITPA 292 (401)
T ss_dssp HHTTCCSEECCCGGGGTSHHHH
T ss_pred HhcCCCCEEecCccccCCHHHH
Confidence 9988899999866555555433
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-08 Score=93.86 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=106.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++.+.+.|+ .++.||+.|.|+.|+ .+++...++++++++.+ ++++.+..+-+|+.++++++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~---------------~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~ 229 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAY 229 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 8999988887 456799999999886 24677788999998876 68999999999999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc----CccEEEEeh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET----GCEGVLSAE 168 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~----gad~VmiGR 168 (287)
++.+++.|+++|- +... +.||+..+++++.+++||++.+.+.+++++.++++.. .+|.|++--
T Consensus 230 ~~~l~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 230 AKMLRDYPLFWYE-------EVGD---PLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp HHHHTTSCCSEEE-------CCSC---TTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred HHHHHHcCCCeec-------CCCC---hhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 9999999999873 2111 4689999999999999999999999999999999986 699998843
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-08 Score=87.58 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=107.7
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHH-cCCCCEEEEec--cCCh---hhhh-----cCcccccccCChHHHHHHHHHHhhc
Q 023070 8 DRPLFVQFCANDP--EILLNAARRV-EPYCDYVDINL--GCPQ---RIAR-----RGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 8 ~~p~~~Qi~g~~~--~~~~~aA~~~-~~g~d~IdiN~--gcP~---~~~~-----~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
+..++.-|...+| +.+.+.++.+ +.|+|.|+|+. .-|. +.+. .-..| -+.....++++++++.
T Consensus 16 ~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G----~~~~~~~~~v~~ir~~ 91 (268)
T 1qop_A 16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAG----VTPAQCFEMLAIIREK 91 (268)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence 4557888888888 8888888755 56899999974 3332 0111 01112 1566778999999988
Q ss_pred -cCCcEEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEeccCCC---------------------C-------------
Q 023070 75 -LNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E------------- 116 (287)
Q Consensus 75 -~~~pv~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~---------------------~------------- 116 (287)
+++||.+=. .++. .....+++.+.++|++++++|.-+.+ .
T Consensus 92 ~~~~Pv~lm~--y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~ 169 (268)
T 1qop_A 92 HPTIPIGLLM--YANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY 169 (268)
T ss_dssp CSSSCEEEEE--CHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH
T ss_pred CCCCCEEEEE--cccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh
Confidence 789986511 0111 12256788888888888888532110 0
Q ss_pred ---------cCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 117 ---------KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 117 ---------~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+.+| +...+.++++++.+++||++.|||+|++++.+++. .|||+|++|++++.
T Consensus 170 ~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~-agAD~vVVGSai~~ 239 (268)
T 1qop_A 170 GRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVR-AGAAGAISGSAIVK 239 (268)
T ss_dssp CCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred CCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHH-cCCCEEEEChHHhh
Confidence 001111 12368899999988999999999999999999887 48999999999864
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-08 Score=91.46 Aligned_cols=143 Identities=12% Similarity=0.167 Sum_probs=117.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+...+...+|+.+.+.++ .++. ||..+.+++|++ +++.-.+++++|++.+ ++++.++.
T Consensus 137 ~v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDa 201 (383)
T 3i4k_A 137 KVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------DPAEDTRRVAELAREVGDRVSLRIDI 201 (383)
T ss_dssp EEEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------CHHHHHHHHHHHHHTTTTTSEEEEEC
T ss_pred eEEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 346666777889999887666 5676 999999998752 4666778899999987 58999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+|+.+++.++++.+++.|+.+|. +.- .+.|++.++++++.+++||.+.+.+.+++++.++++...+|.
T Consensus 202 n~~~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~ 271 (383)
T 3i4k_A 202 NARWDRRTALHYLPILAEAGVELFE-------QPT---PADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADV 271 (383)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCEEE-------SCS---CTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---ChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCE
Confidence 9999999999999999999999884 211 135789999999999999999999999999999999888999
Q ss_pred EEEehhhhhCcc
Q 023070 164 VLSAESLLENPA 175 (287)
Q Consensus 164 VmiGR~~l~nP~ 175 (287)
|++--+-.+...
T Consensus 272 v~~k~~~~GGit 283 (383)
T 3i4k_A 272 IALKTTKHGGLL 283 (383)
T ss_dssp EEECTTTTTSHH
T ss_pred EEEcccccCCHH
Confidence 999654444433
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=91.15 Aligned_cols=160 Identities=14% Similarity=0.233 Sum_probs=103.9
Q ss_pred CCCEEEEecCCC--HHHHHHHHHHH-cCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cC
Q 023070 8 DRPLFVQFCAND--PEILLNAARRV-EPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LN 76 (287)
Q Consensus 8 ~~p~~~Qi~g~~--~~~~~~aA~~~-~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~ 76 (287)
...++.=|...+ .+...+.++.+ +.|+|.|||. |.-|. +..++- .-.+|. -+.+.+.++++++++. .+
T Consensus 19 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a-~~rAL~~G~~~~~~~~~v~~~r~~~~~ 97 (271)
T 3nav_A 19 QGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGA-NLRALAAKTTPDICFELIAQIRARNPE 97 (271)
T ss_dssp BCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 345666666555 57888888855 5699999998 45555 112210 001111 2566788999999987 78
Q ss_pred CcEEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEec--------------------------cCCCC-----------
Q 023070 77 VPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHG--------------------------RTRDE----------- 116 (287)
Q Consensus 77 ~pv~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~--------------------------rt~~~----------- 116 (287)
+|+.+-. .++. .....|++.+.++|++.+++.. .+...
T Consensus 98 ~Pivlm~--Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~g 175 (271)
T 3nav_A 98 TPIGLLM--YANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKG 175 (271)
T ss_dssp SCEEEEE--CHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCS
T ss_pred CCEEEEe--cCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCC
Confidence 9998742 1111 1234677777777777776621 11000
Q ss_pred ------cCCCCcc-----c-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ------KDGKKFR-----A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ------~~~~~~~-----~-~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+|. . ..+.++++++.+++||++.+||++++++.+.+. .|||||.+|++++
T Consensus 176 fiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~-~gADgvIVGSAiv 241 (271)
T 3nav_A 176 YTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIE-AGAAGAISGSAVV 241 (271)
T ss_dssp CEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred eEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 0011111 1 246788999988999999999999999998887 4899999999986
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=93.97 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=114.9
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+..+++..+|+.+.+.++ .++.||..|.+++|| +++.-.+.++++++.+ ++++.++.+
T Consensus 129 ~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan 192 (356)
T 3ro6_B 129 SLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPN 192 (356)
T ss_dssp CEEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECT
T ss_pred ceeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346667888889999998777 567899999999875 3566677888888876 689999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc-CccE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEG 163 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~-gad~ 163 (287)
.+|+.+++.++++.+++.|+.+|- +... +.|++.++++++.+++||.+++.+.+++++.++++.. .+|.
T Consensus 193 ~~~~~~~a~~~~~~l~~~~i~~iE-------qP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~ 262 (356)
T 3ro6_B 193 QSYDRDGLLRLDRLVQELGIEFIE-------QPFP---AGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGI 262 (356)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCCEE-------CCSC---TTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CCCC---CCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCE
Confidence 999999999999999999999883 2111 3588999999888899999999999999999999977 7999
Q ss_pred EEEehhhh
Q 023070 164 VLSAESLL 171 (287)
Q Consensus 164 VmiGR~~l 171 (287)
|++--+-.
T Consensus 263 v~~k~~~~ 270 (356)
T 3ro6_B 263 FNIKLMKC 270 (356)
T ss_dssp EEECHHHH
T ss_pred EEEccccc
Confidence 99854443
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=94.61 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=107.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCC-hhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPN-LQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~-~~~~~~ 94 (287)
+++++++.|+ .++.||+.|.|++||+ | .+++...+.+++||+.+ ++++.++.+-+|+ .+++++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~---------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~ 212 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVM---------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAM 212 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTT---------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCC---------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHH
Confidence 3488888777 5677999999999975 2 25788889999999886 6899999999999 999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+++.+++.|+.+|. +.- .+.+++.++++++.+++||++.+.+.+++++.++++...+|.|++-
T Consensus 213 ~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 213 MAKRLEEFNLNWIE-------EPV---LADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp HHHHSGGGCCSEEE-------CSS---CTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred HHHHhhhcCceEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 99999999999883 211 1358899999999999999999999999999999998889999874
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-09 Score=97.07 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=120.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcC----c-------------ccccccCChHHHHHHH
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRG----N-------------YGAFLMDNLPLVKSLV 68 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~----~-------------~G~~l~~~~~~~~~iv 68 (287)
+..|+-..+.+.+|+++++.++ .++.||..|.+++|+|......+ . .+-...++++...+++
T Consensus 131 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v 210 (418)
T 3r4e_A 131 DGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLF 210 (418)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHH
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 4456666677899999999887 56789999999999975221100 0 0011112356778889
Q ss_pred HHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC
Q 023070 69 EKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 146 (287)
Q Consensus 69 ~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI 146 (287)
++||+.+ ++++.++.+-+|+.++++++++.+++.|+.+|. +.. .+.+++.++++++.+++||++.+.+
T Consensus 211 ~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~ 280 (418)
T 3r4e_A 211 EELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------DCT---PAENQEAFRLVRQHTVTPLAVGEIF 280 (418)
T ss_dssp HHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------SCS---CCSSGGGGHHHHHHCCSCEEECTTC
T ss_pred HHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CccCHHHHHHHHhcCCCCEEEcCCc
Confidence 9999987 689999999999999999999999999999884 211 1357888899999999999999999
Q ss_pred CCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 147 RHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.+++++.++++...+|.|++--+-.+.
T Consensus 281 ~~~~~~~~~l~~~a~d~v~~k~~~~GG 307 (418)
T 3r4e_A 281 NTIWDAKDLIQNQLIDYIRATVVGAGG 307 (418)
T ss_dssp CSGGGTHHHHHTTCCSEECCCTTTTTH
T ss_pred CCHHHHHHHHHcCCCCeEecCccccCC
Confidence 999999999998789999885444433
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=87.24 Aligned_cols=132 Identities=18% Similarity=0.150 Sum_probs=109.0
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|+-..+.+.+++++.+.|+ .++.||+.|.|+.|+ +++...+++++|++.- ++++.+..+-+
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~g~~~~l~vDan~~ 192 (345)
T 2zad_A 129 IETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKVTRGAKYIVDANMG 192 (345)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHSTTCEEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 45555677779999988887 567899999999764 4566677888888762 47888888888
Q ss_pred CChhhHHHHHHHHHHcCCC--EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~--~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
|+.++++++++.+++.|++ +|- +. . .+.|++..+++++.+++||.+.+.+.+++++.++++...+|.|
T Consensus 193 ~~~~~a~~~~~~l~~~~i~~~~iE-------~P--~-~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v 262 (345)
T 2zad_A 193 YTQKEAVEFARAVYQKGIDIAVYE-------QP--V-RREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYV 262 (345)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSEEE-------CC--S-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHHhcCCCeeeee-------CC--C-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 9999999999999999999 763 21 1 1368999999999999999999999999999999998889999
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 263 ~i 264 (345)
T 2zad_A 263 NI 264 (345)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-08 Score=90.72 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=117.7
Q ss_pred CCCCEEEEec---CCCHHHHHHHH-H-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcE
Q 023070 7 EDRPLFVQFC---ANDPEILLNAA-R-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi~---g~~~~~~~~aA-~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv 79 (287)
+..|+-..+. ..+|+++++.+ + .++.||..|.++.|++.+. ...+++.-.+.+++|++.+ ++++
T Consensus 124 ~~v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l 194 (393)
T 4dwd_A 124 TRLPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVI 194 (393)
T ss_dssp SEEEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCE
T ss_pred CceeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeE
Confidence 3456666653 36899998877 6 5667999999999987532 2457888889999999886 6899
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 80 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 80 ~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.++.+-+|+.++++++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+.+.+.+++++.++++..
T Consensus 195 ~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 264 (393)
T 4dwd_A 195 GFDANNGYSVGGAIRVGRALEDLGYSWFE-------EPV---QHYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSG 264 (393)
T ss_dssp EEECTTCCCHHHHHHHHHHHHHTTCSEEE-------CCS---CTTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC
Confidence 99999999999999999999999999884 211 13578999999999999999999999999999999976
Q ss_pred CccEEEEehhh
Q 023070 160 GCEGVLSAESL 170 (287)
Q Consensus 160 gad~VmiGR~~ 170 (287)
+|.|++--+-
T Consensus 265 -~d~v~~k~~~ 274 (393)
T 4dwd_A 265 -VRMVQPDIVK 274 (393)
T ss_dssp -CCEECCCTTT
T ss_pred -CCEEEeCccc
Confidence 9999884433
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=93.03 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=113.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccc-ccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF-LMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~-l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
.+|+++++.|+ .++.||..+.++.|+|.. +..|.. ...+++...+++++||+.+ ++++.++.+-+|+.++++
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~ 225 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYT----IYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAK 225 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCc----ccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHH
Confidence 58999998777 567799999999998753 111221 1224667788899999887 689999999999999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++++.+++.|+++|. +.- .+.|++..+++++.+++||++.+.+.+++++.++++...+|.|++--+-.+.
T Consensus 226 ~~~~~l~~~~i~~iE-------eP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GG 295 (404)
T 4e5t_A 226 RLARRLEAYDPLWFE-------EPI---PPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGG 295 (404)
T ss_dssp HHHHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSC
T ss_pred HHHHHHhhcCCcEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCC
Confidence 999999999999884 111 1357899999999999999999999999999999998889999875444433
Q ss_pred c
Q 023070 174 P 174 (287)
Q Consensus 174 P 174 (287)
.
T Consensus 296 i 296 (404)
T 4e5t_A 296 L 296 (404)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.6e-08 Score=88.74 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=113.6
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g 86 (287)
|+...+...+|+.+.+.++ .++.||..+.+++|++ ++.-.+++++|++.+ ++++.++.+-+
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~~ 193 (354)
T 3jva_A 130 ITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQA 193 (354)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCCC
Confidence 4445677789999988776 5678999999998764 345567888888876 68999999999
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.+++.++++.+++.|+.+|. +.. .+.|++..+++++.+++||.+.+.+.+++++.++++...+|.|++
T Consensus 194 ~~~~~a~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 263 (354)
T 3jva_A 194 WTPKDAVKAIQALADYQIELVE-------QPV---KRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINI 263 (354)
T ss_dssp SCHHHHHHHHHHTTTSCEEEEE-------CCS---CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE-------CCC---ChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999988884 211 135789999999999999999999999999999999888999999
Q ss_pred ehhhhhCc
Q 023070 167 AESLLENP 174 (287)
Q Consensus 167 GR~~l~nP 174 (287)
--+-.+..
T Consensus 264 k~~~~GGi 271 (354)
T 3jva_A 264 KLMKCGGI 271 (354)
T ss_dssp CHHHHTSH
T ss_pred CchhcCCH
Confidence 65554443
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-08 Score=93.93 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred CCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
.++ +.+.++|+ .++.||+.|.|+.|+ +++...+++++|++++ ++++.++.+-+|+.++++
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai 246 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTMADAR 246 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 578 88888877 456799999999775 4677788999999876 689999999899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++.|+++|- +.. .+.+++..+++++.++ +||++.+.+.+++++.++++...+|.|++
T Consensus 247 ~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 310 (428)
T 3bjs_A 247 RVLPVLAEIQAGWLE-------EPF---ACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP 310 (428)
T ss_dssp HHHHHHHHTTCSCEE-------CCS---CTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhcCCCEEE-------CCC---CccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 999999999999873 211 1368999999999998 99999999999999999998878999887
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-07 Score=82.84 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=100.1
Q ss_pred CCCEEEEecCCCH--HHHHHHHHHH-cCCCCEEEEeccCChhh-----hh-----cCcccccccCChHHHHHHHHHHhhc
Q 023070 8 DRPLFVQFCANDP--EILLNAARRV-EPYCDYVDINLGCPQRI-----AR-----RGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 8 ~~p~~~Qi~g~~~--~~~~~aA~~~-~~g~d~IdiN~gcP~~~-----~~-----~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
...+++-|...+| +.+.+.++.+ +.|+|.|+|+.-++-+. +. .-..| -+++...++++++++.
T Consensus 17 ~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g----~~~~~~~~~i~~ir~~ 92 (262)
T 1rd5_A 17 KTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG----TTMDAVLEMLREVTPE 92 (262)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT----CCHHHHHHHHHHHGGG
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence 4567888877777 8888888755 56899999986443111 10 00111 2678889999999988
Q ss_pred cCCcEEEEecCC--------------C--------ChhhHHHHHHHHHHcCCCEEEE-eccCCC-----------C----
Q 023070 75 LNVPVSCKIRVF--------------P--------NLQDTIKYAKMLEDAGCSLLAV-HGRTRD-----------E---- 116 (287)
Q Consensus 75 ~~~pv~vKiR~g--------------~--------~~~~~~~~a~~l~~~G~~~I~v-h~rt~~-----------~---- 116 (287)
+++||.+-.+.. . ..++..++.+.+.+.|.+.+.+ ...+.. .
T Consensus 93 ~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~ 172 (262)
T 1rd5_A 93 LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYL 172 (262)
T ss_dssp CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEE
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEE
Confidence 899988743210 0 0112223333333333332211 111100 0
Q ss_pred --cCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 117 --KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 117 --~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+.+| +...+.++++++.+++||++.|||+|++++.++++ .|||+|.+|++++.
T Consensus 173 ~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~-~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 173 VSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQ-WGADGVIIGSAMVR 235 (262)
T ss_dssp ECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred ecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHH-cCCCEEEEChHHHh
Confidence 001011 11346788999888999999999999999999988 69999999999864
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-09 Score=89.71 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+..++++.+++.|+++|+++..+.... +...+ +.++++++.+++||+++|||.+++++.++++ .|||+|++|+++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~-~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFG---RGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALA-TGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCccccc---CCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHH-cCCCEEEECchH
Confidence 788999999999999999986543321 11345 8899999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+.+|+++.++..
T Consensus 107 l~~p~~~~~~~~ 118 (244)
T 2y88_A 107 LENPQWCARVIG 118 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhChHHHHHHHH
Confidence 999998877643
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=89.09 Aligned_cols=89 Identities=27% Similarity=0.387 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+++.++++.+++.|+++|+++....... ....+++.++++++.+++||+++|+|.+++++.++++ .|||+|++|+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~-~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCcccc---CCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChH
Confidence 4678999999999999999997654321 1235678899999999999999999999999998888 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+++.++..
T Consensus 109 ~~~~~~~~~~~~~ 121 (253)
T 1h5y_A 109 AVRNPQLVALLAR 121 (253)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HhhCcHHHHHHHH
Confidence 9999998887643
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-07 Score=78.19 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
....++++.+...|+..+.+++.+..+... ..+++.++++++..++|||+.||+.+++++.++++ .|+|+|++|++
T Consensus 130 ~~~~~~i~~~~~~~~~~vli~~~~~~g~~~---g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~-~G~~~~~vg~a 205 (237)
T 3cwo_X 130 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASV 205 (237)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTTTCCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESHH
T ss_pred cCHHHHHHHHhhcCCCeEEEEecCCCCccc---cccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-cCcHHHhhhHH
Confidence 356788899999999989998864443322 23488999999989999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+-+.++..
T Consensus 206 ~~~~~~~~~~~~~ 218 (237)
T 3cwo_X 206 FHFREIDVRELKE 218 (237)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHcCCCCHHHHHH
Confidence 9999999987754
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-08 Score=93.18 Aligned_cols=162 Identities=10% Similarity=0.063 Sum_probs=122.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhh-----cC-ccccccc--CChHHHHHHHHHHhhcc--
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR-----RG-NYGAFLM--DNLPLVKSLVEKLALNL-- 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~-----~~-~~G~~l~--~~~~~~~~iv~~v~~~~-- 75 (287)
+..|+-..+.+.+|+++++.++ .++.||..|.+.+|++..... ++ .-|..+. +.++...+++++||+++
T Consensus 142 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~ 221 (422)
T 3tji_A 142 DAIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGW 221 (422)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCS
T ss_pred CeEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCC
Confidence 3456656677889999998887 567899999999987421000 00 0111111 12566788899999886
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++++.++.+-+|+.++++++++.+++.|+.+|- +.- .+.+++.++++++.+++||++.+.+.+++++.++
T Consensus 222 d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~l 291 (422)
T 3tji_A 222 KLHILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------DIL---PPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDL 291 (422)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CCS---CGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHH
Confidence 689999999999999999999999999999883 211 1357788899999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchh
Q 023070 156 LEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
++...+|.|++--+-.+...-..
T Consensus 292 l~~ga~d~v~~k~~~~GGit~~~ 314 (422)
T 3tji_A 292 IVNRRIDFIRCHVSQIGGITPAL 314 (422)
T ss_dssp HHTTCCSEECCCGGGGTSHHHHH
T ss_pred HhcCCCCEEecCccccCCHHHHH
Confidence 99888999998665555554333
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-07 Score=80.44 Aligned_cols=141 Identities=17% Similarity=0.228 Sum_probs=98.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|++..=+.-++.++.+|. ..|+|+|=|... .+ +++.+.++++..++ .++.+.+-+.
T Consensus 113 ~lPvl~kdfiid~~qv~~A~---~~GAD~VlLi~a--------------~l-~~~~l~~l~~~a~~-lGl~~lvev~--- 170 (272)
T 3qja_A 113 SIPVLRKDFVVQPYQIHEAR---AHGADMLLLIVA--------------AL-EQSVLVSMLDRTES-LGMTALVEVH--- 170 (272)
T ss_dssp SSCEEEESCCCSHHHHHHHH---HTTCSEEEEEGG--------------GS-CHHHHHHHHHHHHH-TTCEEEEEES---
T ss_pred CCCEEECccccCHHHHHHHH---HcCCCEEEEecc--------------cC-CHHHHHHHHHHHHH-CCCcEEEEcC---
Confidence 45777665666776555443 468898888531 11 24556677776654 4666665542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.+ + ++.+.+.|+++|-+++|.... . ..+++.+.++.+.+ ++||++.|||+|++|+.++++ .|+|+|.
T Consensus 171 t~e---e-~~~A~~~Gad~IGv~~r~l~~---~--~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~-~Gadgvl 240 (272)
T 3qja_A 171 TEQ---E-ADRALKAGAKVIGVNARDLMT---L--DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAG-AGADAVL 240 (272)
T ss_dssp SHH---H-HHHHHHHTCSEEEEESBCTTT---C--CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHH-TTCSEEE
T ss_pred CHH---H-HHHHHHCCCCEEEECCCcccc---c--ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHH-cCCCEEE
Confidence 222 2 344557899999999875432 1 35678888888877 799999999999999999998 5999999
Q ss_pred EehhhhhCccchhch
Q 023070 166 SAESLLENPALFAGF 180 (287)
Q Consensus 166 iGR~~l~nP~lf~~~ 180 (287)
||++++..++.-..+
T Consensus 241 VGsal~~a~dp~~~~ 255 (272)
T 3qja_A 241 VGEGLVTSGDPRAAV 255 (272)
T ss_dssp ECHHHHTCSCHHHHH
T ss_pred EcHHHhCCCCHHHHH
Confidence 999999877654433
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=89.22 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+..++++.++++|+++|+++..+.... +...+ +.++++++.+++||+++|||.+++++.++++ .|||+|.+|+.+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~-~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG---TGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALA-TGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc---CCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHH-cCCCEEEECchH
Confidence 778899999999999999986543211 11355 8899999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+.+|+++.++..
T Consensus 108 l~~p~~~~~~~~ 119 (244)
T 1vzw_A 108 LETPEWVAKVIA 119 (244)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhCHHHHHHHHH
Confidence 999998877643
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-07 Score=86.67 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=110.4
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g 86 (287)
|+...+...+|+.+.+.++ .++.||..+.+..|+ +++.-.+.+++|++.+ ++++.+..+-+
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~~ 194 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG----------------SKELDVERIRMIREAAGDSITLRIDANQG 194 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 5556777789999998776 567899999999864 2455677888888876 68899999999
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.++++++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+.+.+.+++++.++++...+|.|++
T Consensus 195 ~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~ 264 (368)
T 3q45_A 195 WSVETAIETLTLLEPYNIQHCE-------EPV---SRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNL 264 (368)
T ss_dssp BCHHHHHHHHHHHGGGCCSCEE-------CCB---CGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CChHHHHHHHHHHhhcCCCEEE-------CCC---ChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEe
Confidence 9999999999999999999884 211 135788889999999999999999999999999999888999998
Q ss_pred e
Q 023070 167 A 167 (287)
Q Consensus 167 G 167 (287)
-
T Consensus 265 k 265 (368)
T 3q45_A 265 K 265 (368)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.6e-08 Score=85.64 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhhHHHHHHHHHH
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLED 101 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~~~~~a~~l~~ 101 (287)
++...++.|+|.||+.+ ++|..+..+.+.+.+-+.+|++.++-+ .+|+=+ + .+.++....++...+
T Consensus 131 Ea~~Ai~~GAdEIDmVI----------Nig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia~e 199 (288)
T 3oa3_A 131 EAKRAMQNGASELDMVM----------NYPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLSSL 199 (288)
T ss_dssp HHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEe----------ehhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHHHH
Confidence 44446788999999543 145555568888999999998887655 366533 2 345666777888899
Q ss_pred cCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHh--hCCCcEEEecCCCCHHHHHHHHHhcCcc--EEEEehhhh
Q 023070 102 AGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 171 (287)
Q Consensus 102 ~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipVi~nGgI~s~~da~~~l~~~gad--~VmiGR~~l 171 (287)
+|+|+|--+ |-+. ......|...++++.+ ..+++|.++|||+|.+++.++++ .||+ |...|+.++
T Consensus 200 aGADfVKTSTGf~~----~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~-aGA~RiGtS~g~~I~ 269 (288)
T 3oa3_A 200 AGADYVKTSTGFNG----PGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVR-AGAERLGASAGVKIV 269 (288)
T ss_dssp TTCSEEECCCSSSS----CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHH-TTCSEEEESCHHHHH
T ss_pred cCCCEEEcCCCCCC----CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-cCCceeehhhHHHHH
Confidence 999999544 3221 1111235566666654 24799999999999999999998 5999 444444444
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-07 Score=89.19 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccc-cCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDT 92 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l-~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~ 92 (287)
..+|+++++.|+ .++.||..|.++.|+|... ..|... ..+++...+++++||+.+ ++++.++.+-+|+.+++
T Consensus 142 ~~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A 217 (412)
T 4e4u_A 142 YDDPDLAAECAAENVKLGFTAVKFDPAGPYTA----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSA 217 (412)
T ss_dssp SSCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcc----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHH
Confidence 358999998777 5677999999999987531 112111 123667788899999887 58999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+++++.+++.|+.+|. +.- .+.|++.++++++.+++||.+.+.+.+++++.++++...+|.|++--+-.+
T Consensus 218 ~~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~G 287 (412)
T 4e4u_A 218 IRLAKRLEKYDPLWFE-------EPV---PPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287 (412)
T ss_dssp HHHHHHHGGGCCSEEE-------CCS---CSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred HHHHHHhhhcCCcEEE-------CCC---ChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccC
Confidence 9999999999999884 111 135789999999999999999999999999999999878999988554444
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
...
T Consensus 288 Git 290 (412)
T 4e4u_A 288 GLL 290 (412)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.2e-08 Score=81.58 Aligned_cols=149 Identities=24% Similarity=0.275 Sum_probs=94.7
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhh--hh--cCccccccc------CChHHHHHHHHH-----
Q 023070 7 EDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRI--AR--RGNYGAFLM------DNLPLVKSLVEK----- 70 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~--~~--~~~~G~~l~------~~~~~~~~iv~~----- 70 (287)
.+.|+++.|.+.+++++.+.++.+ +.|++.|++...+|... .+ ...++.-++ .+++.+...++.
T Consensus 5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V 84 (212)
T 2v82_A 5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLI 84 (212)
T ss_dssp SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEE
Confidence 478999999999999999988865 55899999997776521 11 112222111 123332222211
Q ss_pred -----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--
Q 023070 71 -----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 137 (287)
Q Consensus 71 -----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 137 (287)
.++..+.++.+.+ .+..+ +....+.|+|+|.++.. ....++.++++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~g~~~~~g~------~t~~e-~~~a~~~G~d~v~v~~t---------~~~g~~~~~~l~~~~~~~ 148 (212)
T 2v82_A 85 VTPNIHSEVIRRAVGYGMTVCPGC------ATATE-AFTALEAGAQALKIFPS---------SAFGPQYIKALKAVLPSD 148 (212)
T ss_dssp ECSSCCHHHHHHHHHTTCEEECEE------CSHHH-HHHHHHTTCSEEEETTH---------HHHCHHHHHHHHTTSCTT
T ss_pred EeCCCCHHHHHHHHHcCCCEEeec------CCHHH-HHHHHHCCCCEEEEecC---------CCCCHHHHHHHHHhccCC
Confidence 0001122221110 11122 33446678888876421 0235788899988775
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+||++.|||. ++++.++++ .|+|+|.+|++++..
T Consensus 149 ipvia~GGI~-~~~i~~~~~-~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 149 IAVFAVGGVT-PENLAQWID-AGCAGAGLGSDLYRA 182 (212)
T ss_dssp CEEEEESSCC-TTTHHHHHH-HTCSEEEECTTTCCT
T ss_pred CeEEEeCCCC-HHHHHHHHH-cCCCEEEEChHHhCC
Confidence 9999999997 899999998 699999999998865
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=88.60 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|.++......... ..+++.++++++.+++||+++|||.+++++.++++ .|||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~---g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~-~Gad~v~lg~~ 105 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADKALAASV 105 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSCSS---CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHH-HTCSEEECCCC
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccCCC---cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCcHhhhhHH
Confidence 468899999999999999998766543222 36789999999999999999999999999999998 69999999999
Q ss_pred hh-h--Cccchhchh
Q 023070 170 LL-E--NPALFAGFR 181 (287)
Q Consensus 170 ~l-~--nP~lf~~~~ 181 (287)
++ . +|+.+.++.
T Consensus 106 ~~~~~~~~~~~~~~~ 120 (266)
T 2w6r_A 106 FHFREIDMRELKEYL 120 (266)
T ss_dssp C------CHHHHHHC
T ss_pred HHhCCCCHHHHHHHH
Confidence 99 5 899888764
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.7e-08 Score=90.89 Aligned_cols=125 Identities=11% Similarity=0.142 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
+.+++++.++|+ ..+.||+.|.|+.|+ +++...+++++|++.+ ++++.+..+-+|+.++++
T Consensus 196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 259 (441)
T 2hxt_A 196 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 259 (441)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 358999988887 557799999999763 3677788899999876 689999998899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++++.+++.|+++|- +. . .+.|++..+++++.+ ++||++.+.+.+++++.++++...+|.|++-
T Consensus 260 ~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 260 DWMRQLAEFDIAWIE-------EP--T-SPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp HHHHTTGGGCCSCEE-------CC--S-CTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred HHHHHHHhcCCCeee-------CC--C-CHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999773 21 1 135889999999887 6999999999999999999998889999873
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-07 Score=86.67 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=108.4
Q ss_pred CCEEEEecC---CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEE
Q 023070 9 RPLFVQFCA---NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 81 (287)
Q Consensus 9 ~p~~~Qi~g---~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~v 81 (287)
.|+-..+.| .+++.+.+.++ .++. ||..|.+++|+| +++.-.+.++++++.+ ++++.+
T Consensus 138 v~~y~s~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~v 202 (372)
T 3tj4_A 138 VEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHD---------------DPNIDIARLTAVRERVDSAVRIAI 202 (372)
T ss_dssp EEEEECTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCCS---------------SHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEecCCccCCCHHHHHHHHHHHHHccCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCcEEe
Confidence 455554333 38888887766 6778 999999998865 3455678889999877 689999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+.+-+|+.+++.++++.+++.|+.+|- +.. .+.|++.++++++.+++||.+.+.+.+++++.++++...+
T Consensus 203 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~ 272 (372)
T 3tj4_A 203 DGNGKWDLPTCQRFCAAAKDLDIYWFE-------EPL---WYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAV 272 (372)
T ss_dssp ECTTCCCHHHHHHHHHHTTTSCEEEEE-------SCS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHHhhcCCCEEE-------CCC---CchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCC
Confidence 999999999999999999999988773 211 1357899999999999999999999999999999998789
Q ss_pred cEEEE
Q 023070 162 EGVLS 166 (287)
Q Consensus 162 d~Vmi 166 (287)
|.|++
T Consensus 273 d~v~~ 277 (372)
T 3tj4_A 273 AYVQP 277 (372)
T ss_dssp SEECC
T ss_pred CEEEe
Confidence 98887
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=86.34 Aligned_cols=141 Identities=12% Similarity=0.117 Sum_probs=112.9
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..+...+++.+.+.++ .++.||..+.+..|+. +++.-.+.+++|++.+ ++++.++.+
T Consensus 135 ~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan 199 (377)
T 3my9_A 135 RIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------PHAEELRILETMRGEFGERIDLRLDFN 199 (377)
T ss_dssp EEEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------cHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 345656676678888877665 5667999999998742 3455567788888876 689999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.++++++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+.+.+.++.++.++++...+|.|
T Consensus 200 ~~~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v 269 (377)
T 3my9_A 200 QALTPFGAMKILRDVDAFRPTFIE-------QPV---PRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAI 269 (377)
T ss_dssp TCCCTTTHHHHHHHHHTTCCSCEE-------CCS---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCcCHHHHHHHHHHHhhcCCCEEE-------CCC---CccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999998883 211 1357999999999999999999999999999999998889999
Q ss_pred EEehhhhhC
Q 023070 165 LSAESLLEN 173 (287)
Q Consensus 165 miGR~~l~n 173 (287)
++--+-.+.
T Consensus 270 ~~k~~~~GG 278 (377)
T 3my9_A 270 SVKIMKCGG 278 (377)
T ss_dssp ECCHHHHTS
T ss_pred EecccccCC
Confidence 985444333
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-07 Score=86.71 Aligned_cols=135 Identities=10% Similarity=0.210 Sum_probs=111.4
Q ss_pred CCCEEEEecC---CCHHHHHHHHH-HHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCc
Q 023070 8 DRPLFVQFCA---NDPEILLNAAR-RVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVP 78 (287)
Q Consensus 8 ~~p~~~Qi~g---~~~~~~~~aA~-~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~p 78 (287)
..|+-..+++ .+|+.+.+.++ .++. ||..|.+..|.+ +++.-.+.+++|++.+ +++
T Consensus 157 ~v~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~~ 221 (390)
T 3ugv_A 157 SVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDTA 221 (390)
T ss_dssp EEEEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSE
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCE
Confidence 3455566666 78999988776 6788 999999998753 3556677888888876 689
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+.+..+-+|+.++++++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+.+.+.++.++.++++.
T Consensus 222 l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~ 291 (390)
T 3ugv_A 222 LMVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------EPV---VYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQA 291 (390)
T ss_dssp EEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHc
Confidence 999999999999999999999999998883 211 1357899999999999999999999999999999998
Q ss_pred cCccEEEEe
Q 023070 159 TGCEGVLSA 167 (287)
Q Consensus 159 ~gad~VmiG 167 (287)
..+|.|++-
T Consensus 292 ~a~d~v~ik 300 (390)
T 3ugv_A 292 GACDLVMPD 300 (390)
T ss_dssp TCCSEECCB
T ss_pred CCCCEEEeC
Confidence 789999874
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.2e-07 Score=86.86 Aligned_cols=145 Identities=12% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCCEEEEec----CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEE
Q 023070 8 DRPLFVQFC----ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 80 (287)
Q Consensus 8 ~~p~~~Qi~----g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~ 80 (287)
..|+-..++ ..+|+.+++.|+ .++.||..|.+++|+ +++.-.+.+++|++.+ ++++.
T Consensus 127 ~v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~ 190 (391)
T 3gd6_A 127 KIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIK 190 (391)
T ss_dssp EEEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEE
T ss_pred eEEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEE
Confidence 456666777 788999988887 567899999999875 2456677888888876 58899
Q ss_pred -EEecCCCChhhHHHHHHHHHHcCC--CEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 81 -CKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 81 -vKiR~g~~~~~~~~~a~~l~~~G~--~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
+..+-+|+.+++.++++.+++.|+ .+|. +.- .+.|++.++++++.+++|| .+.+.+++++.++++
T Consensus 191 ~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------qP~---~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~ 258 (391)
T 3gd6_A 191 SYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------SPA---PRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIK 258 (391)
T ss_dssp EEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------CCS---CTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHHhcCCCcceec-------CCC---ChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHH
Confidence 999999999999999999999999 7774 211 1357999999999999999 888999999999999
Q ss_pred hcCccEEEEehhhhhCccchhch
Q 023070 158 ETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
...+|.|++--+-.+...-+.++
T Consensus 259 ~~~~d~v~~k~~~~GGit~~~~i 281 (391)
T 3gd6_A 259 KDAIDIFNISPVFIGGLTSAKKA 281 (391)
T ss_dssp HTCCSEEEECHHHHTSHHHHHHH
T ss_pred cCCCCEEEECchhcCCHHHHHHH
Confidence 88899999987777776644433
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-07 Score=84.97 Aligned_cols=134 Identities=12% Similarity=0.125 Sum_probs=110.8
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-..++..+|+.+.+.++ .++. ||..+.+..|++ +++.-.+.++++++.+ ++++.+..
T Consensus 156 ~v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vDa 220 (383)
T 3toy_A 156 PIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLDF 220 (383)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ceEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 346656665679999988776 5678 999999998753 3556677888888876 68999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.++++++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+.+.+.++.++.++++...+|.
T Consensus 221 N~~~~~~~A~~~~~~l~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~ 290 (383)
T 3toy_A 221 NQSLDPAEATRRIARLADYDLTWIE-------EPV---PQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDF 290 (383)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCEEE-------CCC---CcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCE
Confidence 9999999999999999999998883 211 135789999999999999999999999999999999878999
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 291 v~i 293 (383)
T 3toy_A 291 IMP 293 (383)
T ss_dssp ECC
T ss_pred EEe
Confidence 876
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=82.69 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=96.1
Q ss_pred HHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE------ecCCCC--------h
Q 023070 25 NAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK------IRVFPN--------L 89 (287)
Q Consensus 25 ~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK------iR~g~~--------~ 89 (287)
++++ +.+.|+|.|+|-. +.--+.+.+.++++++++ .++|+.+= +..|.+ .
T Consensus 24 ~~~~~l~~~GaD~ielG~--------------S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdLp~ 88 (240)
T 1viz_A 24 EQLEILCESGTDAVIIGG--------------SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSVLN 88 (240)
T ss_dssp HHHHHHHTSCCSEEEECC------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEETT
T ss_pred HHHHHHHHcCCCEEEECC--------------CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEcccCc
Confidence 3444 4567999999975 122467789999999998 78998852 112211 1
Q ss_pred hhHHHH-----HHHHHHcC-----CCEEE----E-eccCC-------------C--------------Cc---CCCCccc
Q 023070 90 QDTIKY-----AKMLEDAG-----CSLLA----V-HGRTR-------------D--------------EK---DGKKFRA 124 (287)
Q Consensus 90 ~~~~~~-----a~~l~~~G-----~~~I~----v-h~rt~-------------~--------------~~---~~~~~~~ 124 (287)
++..++ .+.+.+.| .+.|. + ++.+. . .. .......
T Consensus 89 ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G~~~ 168 (240)
T 1viz_A 89 SKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLG 168 (240)
T ss_dssp BSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTTSCC
T ss_pred ccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCCccC
Confidence 212233 45567777 76664 3 11110 0 00 0001145
Q ss_pred cHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc-chhchhh
Q 023070 125 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA-LFAGFRT 182 (287)
Q Consensus 125 ~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~-lf~~~~~ 182 (287)
+.+.++++++.+ ++||++.|||+|++++.++++ |||+|.+|+++..+|. ++++++.
T Consensus 169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~--gAd~VIVGSa~v~~~~~~~~~v~~ 226 (240)
T 1viz_A 169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE--HADVIVVGNAVYEDFDRALKTVAA 226 (240)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT--TCSEEEECTHHHHCHHHHHTHHHH
T ss_pred hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh--CCCEEEEChHHHhCHHHHHHHHHH
Confidence 789999999999 999999999999999999876 8999999999999999 8887654
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.8e-08 Score=89.24 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
|.+|+++++.++ .++.||..|.|++|+ +++.-.+.+++||+.+ ++++.+..+-+|+.+++.
T Consensus 153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~ 216 (392)
T 3ddm_A 153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLPRAR 216 (392)
T ss_dssp EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 445888888777 456799999999873 4566778889999886 689999999999999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCcccc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++++.+++.|+.+|- +.- .+.| ++.++++++.+++||.+.+.+.+++++.++++...+|.|++-
T Consensus 217 ~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 217 QMAQRLGPAQLDWLE-------EPL---RADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp HHHHHHGGGCCSEEE-------CCS---CTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHhCCCEEE-------CCC---CccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999884 211 1356 899999999999999999999999999999988789998873
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-07 Score=84.06 Aligned_cols=144 Identities=12% Similarity=0.170 Sum_probs=117.6
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
.+..|+-..+...+|+++++.++ .++.||..|.+++|||.. ..+++.-.+.++++++.+ ++++.+.
T Consensus 132 ~~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vD 200 (386)
T 3fv9_G 132 AGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLAD 200 (386)
T ss_dssp SSCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEE
T ss_pred CCceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 34568888888999999998887 567899999999998732 124667778899999987 5899999
Q ss_pred ecCCCChhhHHHHHHHH-HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 83 IRVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l-~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
.+-+|+..++.++++.+ ++.++ +| ++ |.+ +++..+++++.+++||.+...+.++.++.++++...+
T Consensus 201 aN~~~~~~~A~~~~~~l~~~~~i-~i-------Ee----P~~-~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~ 267 (386)
T 3fv9_G 201 ANNGLTVEHALRMLSLLPPGLDI-VL-------EA----PCA-SWAETKSLRARCALPLLLDELIQTETDLIAAIRDDLC 267 (386)
T ss_dssp CTTCCCHHHHHHHHHHSCSSCCC-EE-------EC----CCS-SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHhhccCCc-EE-------ec----CCC-CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCC
Confidence 99999999999999999 77776 65 22 123 8899999999999999999999999999999998889
Q ss_pred cEEEEehhhhhC
Q 023070 162 EGVLSAESLLEN 173 (287)
Q Consensus 162 d~VmiGR~~l~n 173 (287)
|.|++--+-.+.
T Consensus 268 d~v~~k~~~~GG 279 (386)
T 3fv9_G 268 DGVGLKVSKQGG 279 (386)
T ss_dssp SEEEEEHHHHTS
T ss_pred CEEEECccccCC
Confidence 999985444433
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-07 Score=78.45 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=95.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.+.-.++... .+-..++.|+|+|-++... ..+.+.++++.+++. +.++.+-+..
T Consensus 53 ~~~i~~~~~~~~~~~~-~~~~~~~~Gad~v~v~~~~----------------~~~~~~~~~~~~~~~-g~~~~v~~~~-- 112 (211)
T 3f4w_A 53 HKEVLADAKIMDGGHF-ESQLLFDAGADYVTVLGVT----------------DVLTIQSCIRAAKEA-GKQVVVDMIC-- 112 (211)
T ss_dssp TSEEEEEEEECSCHHH-HHHHHHHTTCSEEEEETTS----------------CHHHHHHHHHHHHHH-TCEEEEECTT--
T ss_pred CCEEEEEEEeccchHH-HHHHHHhcCCCEEEEeCCC----------------ChhHHHHHHHHHHHc-CCeEEEEecC--
Confidence 4677666655554432 1222456799999997421 123445566665543 5565554221
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
..+..+.++.+.+.|+++|.++.....+... +..++.++++++.. ++||++.|||+ ++++.++++ .|||+|.+
T Consensus 113 -~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~---~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~-~Gad~vvv 186 (211)
T 3f4w_A 113 -VDDLPARVRLLEEAGADMLAVHTGTDQQAAG---RKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYAL-LGPDVVIV 186 (211)
T ss_dssp -CSSHHHHHHHHHHHTCCEEEEECCHHHHHTT---CCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHT-TCCSEEEE
T ss_pred -CCCHHHHHHHHHHcCCCEEEEcCCCcccccC---CCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHH-cCCCEEEE
Confidence 2345577888899999999887432221111 24678899999886 89999999996 999999998 59999999
Q ss_pred ehhhhhCccc
Q 023070 167 AESLLENPAL 176 (287)
Q Consensus 167 GR~~l~nP~l 176 (287)
||+++..++.
T Consensus 187 Gsai~~~~d~ 196 (211)
T 3f4w_A 187 GSAITHAADP 196 (211)
T ss_dssp CHHHHTCSSH
T ss_pred CHHHcCCCCH
Confidence 9999876653
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=87.98 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=118.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccc------------------c--cCChHHHH
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF------------------L--MDNLPLVK 65 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~------------------l--~~~~~~~~ 65 (287)
+..|+-.-+.+.+|+++++.++ .++.||..+.+..|-|... ..||.. . ..+.+...
T Consensus 137 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~---~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~ 213 (424)
T 3v3w_A 137 ERILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIA---KTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIP 213 (424)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCS---CCTTCC-----CCSCCBSSCCEEEECHHHHHHHHH
T ss_pred CceeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCcccc---ccccccccccccccccccccccccccchhHHHHHH
Confidence 3456655677889999998887 5678999999998864310 001110 0 01245678
Q ss_pred HHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 66 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 66 ~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+++++||+++ ++++.+..+-+|+.++++++++.+++.|+.+|. +.- .+.+++.++++++.+++||++.
T Consensus 214 e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~d 283 (424)
T 3v3w_A 214 DVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME-------DAV---PAENQESFKLIRQHTTTPLAVG 283 (424)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCS---CCSSTTHHHHHHHHCCSCEEEC
T ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---ChHhHHHHHHHHhhCCCCEEEc
Confidence 8899999887 689999999999999999999999999999884 111 1357788999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+.+.+++++.++++...+|.|++--+-.+..
T Consensus 284 E~~~~~~~~~~~i~~ga~d~v~~k~~~~GGi 314 (424)
T 3v3w_A 284 EVFNSIHDCRELIQNQWIDYIRTTIVHAGGI 314 (424)
T ss_dssp TTCCSGGGTHHHHHTTCCSEECCCTTTTTHH
T ss_pred cCcCCHHHHHHHHHcCCCCeEeecchhcCCH
Confidence 9999999999999987899998854444433
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-07 Score=84.94 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=110.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChH-HHHHHHHHHhhcc--CCcEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLP-LVKSLVEKLALNL--NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~-~~~~iv~~v~~~~--~~pv~v 81 (287)
+..|+...++..+|+.+.+.++ .++. ||..+.+..|.. +. .-.+.+++|++.+ ++++.+
T Consensus 127 ~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~----------------~~~~d~~~v~avR~a~g~~~~l~v 190 (367)
T 3dg3_A 127 DRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRR----------------PVQLDTAVVRALRERFGDAIELYV 190 (367)
T ss_dssp SEEEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCS----------------STHHHHHHHHHHHHHHGGGSEEEE
T ss_pred CeEEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCC----------------hhhhHHHHHHHHHHHhCCCCEEEE
Confidence 3446667777789999988776 5677 999999997641 22 4466788888876 689999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
..+-+|+.+++.++++.+++.|+.+|. +.- .+.|++..+++++.+++||.+.+.+.+++++.++++...+
T Consensus 191 Dan~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~ 260 (367)
T 3dg3_A 191 DGNRGWSAAESLRAMREMADLDLLFAE-------ELC---PADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSA 260 (367)
T ss_dssp ECTTCSCHHHHHHHHHHTTTSCCSCEE-------SCS---CTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCEEE-------CCC---CcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998884 211 1357888999999999999999999999999999998789
Q ss_pred cEEEE
Q 023070 162 EGVLS 166 (287)
Q Consensus 162 d~Vmi 166 (287)
|.|++
T Consensus 261 d~v~~ 265 (367)
T 3dg3_A 261 TAISI 265 (367)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 99988
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-07 Score=88.81 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=117.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccc-----cc---------------CChHHHH
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAF-----LM---------------DNLPLVK 65 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~-----l~---------------~~~~~~~ 65 (287)
+..|+-.-+.+.+|+++++.++ .++.||..|.+..|.|.. ...||.. .. +..+...
T Consensus 138 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~---~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~ 214 (425)
T 3vcn_A 138 TGVTVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGL---ASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVP 214 (425)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC---SCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTH
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCccc---cccccccccccccCcccccccccccccchhHHHHHH
Confidence 4456656677889999998887 567899999999887431 0011100 00 0123456
Q ss_pred HHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 66 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 66 ~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+++++||+.+ ++++.+..+-+|+.++++++++.+++.|+.+|. +.- .+.+++.++++++.+++||++.
T Consensus 215 e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~d 284 (425)
T 3vcn_A 215 KLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE-------DSV---PAENQAGFRLIRQHTTTPLAVG 284 (425)
T ss_dssp HHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CCS---CCSSTTHHHHHHHHCCSCEEEC
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---ChhhHHHHHHHHhcCCCCEEeC
Confidence 7888888876 689999999999999999999999999999884 111 1347788999999999999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+.+++++.++++...+|.|++--+-.+...
T Consensus 285 E~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 316 (425)
T 3vcn_A 285 EIFAHVWDAKQLIEEQLIDYLRATVLHAGGIT 316 (425)
T ss_dssp TTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CCcCCHHHHHHHHHcCCCCeEecChhhcCCHH
Confidence 99999999999999878999998654444333
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-07 Score=83.31 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=45.5
Q ss_pred cccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..+++.++++++.+++||+ +.|||.+++|+.++++ .|||+|++|++++..++
T Consensus 193 ~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~-~GAdgVlVGsai~~a~d 246 (297)
T 4adt_A 193 RAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQ-LGMDGVFVGSGIFESEN 246 (297)
T ss_dssp TCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHH-TTCSCEEESHHHHTSSC
T ss_pred CCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHH-cCCCEEEEhHHHHcCCC
Confidence 3578889999988888887 9999999999999998 59999999999997543
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-07 Score=83.09 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=112.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
+..|+-..+...+++.+.+.++ .++.||..+.+..|+. +++.-.+.++++++.+ ++++.+..+
T Consensus 136 ~~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~~~~~l~vDan 200 (385)
T 3i6e_A 136 DTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------DHAFDIMRLELIARDFPEFRVRVDYN 200 (385)
T ss_dssp SEEEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred CceEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 3456667777778888777665 5677999999998742 3455567788888776 688999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+|+.+++.++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+...+.++.++.++++...+|.|
T Consensus 201 ~~~~~~~A~~~~~~L~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v 270 (385)
T 3i6e_A 201 QGLEIDEAVPRVLDVAQFQPDFIE-------QPV---RAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGV 270 (385)
T ss_dssp TCCCGGGHHHHHHHHHTTCCSCEE-------CCS---CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999998883 211 1357999999999999999999999999999999998889999
Q ss_pred EEehhhhh
Q 023070 165 LSAESLLE 172 (287)
Q Consensus 165 miGR~~l~ 172 (287)
++--+-.+
T Consensus 271 ~~k~~~~G 278 (385)
T 3i6e_A 271 SIKIMKSG 278 (385)
T ss_dssp EECHHHHT
T ss_pred EecccccC
Confidence 98544433
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.5e-07 Score=85.55 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=103.7
Q ss_pred CCEEEEecC-CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 9 RPLFVQFCA-NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.|+...++. .+++.+.+.|+ .++.||+.|.++.+ |+...++++++++.+ ++++.+..+
T Consensus 130 ~~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~------------------~~~~~e~v~avr~~~g~~~~l~vDan 191 (368)
T 1sjd_A 130 VPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE------------------PGWDVEPVRAVRERFGDDVLLQVDAN 191 (368)
T ss_dssp EEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB------------------TTBSHHHHHHHHHHHCTTSEEEEECT
T ss_pred ccceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC------------------chhHHHHHHHHHHhcCCCceEEEecc
Confidence 344445543 48999988887 45679999999863 233457777777766 588888888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.++ +++++.+++.|+++|- +. . .+.+++..+++++.+++||++.+.+.+++++.++++...+|.|
T Consensus 192 ~~~~~~~-~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v 260 (368)
T 1sjd_A 192 TAYTLGD-APQLARLDPFGLLLIE-------QP--L-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIV 260 (368)
T ss_dssp TCCCGGG-HHHHHTTGGGCCSEEE-------CC--S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHH-HHHHHHHHhcCCCeEe-------CC--C-ChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEE
Confidence 8999999 9999999999999873 21 1 1368999999999999999999999999999999998889999
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 261 ~i 262 (368)
T 1sjd_A 261 NI 262 (368)
T ss_dssp EE
T ss_pred Ee
Confidence 98
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=81.62 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=89.0
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhhHHHHHHHHHH
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLED 101 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~~~~~a~~l~~ 101 (287)
++...++.|+|.||+.+ ++|.....+.+.+.+-+.++++.++- ..+|+=+ + .+.++....++...+
T Consensus 100 Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~ 168 (239)
T 3ngj_A 100 ETKVAVEQGAEEVDMVI----------NIGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVA 168 (239)
T ss_dssp HHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEe----------ehHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHH
Confidence 44446788999999875 25555556788888888888887741 2344422 2 355667778888899
Q ss_pred cCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEE--EEehhhh
Q 023070 102 AGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV--LSAESLL 171 (287)
Q Consensus 102 ~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~V--miGR~~l 171 (287)
+|+|+|-.. |.. ++.+..+.++.+++.+ +++|.++|||+|.+|+.++++ .||+.+ ..|+.++
T Consensus 169 aGADfVKTSTGf~-------~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~-aGA~riGtS~~~~I~ 235 (239)
T 3ngj_A 169 AGAEYVKTSTGFG-------THGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMIN-NGASRIGASAGIAIL 235 (239)
T ss_dssp HTCSEEECCCSSS-------SCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHH-TTEEEEEESCHHHHH
T ss_pred HCcCEEECCCCCC-------CCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHH-hcccceecccHHHHH
Confidence 999999654 321 1235555566555543 699999999999999999998 599944 4444444
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=89.88 Aligned_cols=134 Identities=19% Similarity=0.159 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l 99 (287)
....++..+++.|+|.|.+... + .+++...+.++.+++.+ ++|+..+-= ...+.++.+
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a-----------~----g~~~~~~~~i~~l~~~~p~~pvi~G~v------~t~~~a~~~ 291 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTA-----------H----GHSAGVLRKIAEIRAHFPNRTLIAGNI------ATAEGARAL 291 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCS-----------C----TTCHHHHHHHHHHHHHCSSSCEEEEEE------CSHHHHHHH
T ss_pred hHHHHHHHHHHcCCCeEEEeee-----------c----CcchhHHHHHHHHHHHCCCCcEeCCCc------cCHHHHHHH
Confidence 3444555566779999998741 1 13455667888888877 889885511 123567788
Q ss_pred HHcCCCEEEEecc------CCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 100 EDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 100 ~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
.++|+++|.|... ++. ... .+.+.++.++++.. ..++|||++|||+++.|+.+++. .|||+|++||++
T Consensus 292 ~~~Gad~I~vg~g~g~~~~tr~-~~~-~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~-~GA~~v~vG~~~ 368 (491)
T 1zfj_A 292 YDAGVDVVKVGIGPGSICTTRV-VAG-VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALA-AGGNAVMLGSMF 368 (491)
T ss_dssp HHTTCSEEEECSSCCTTBCHHH-HTC-CCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTT
T ss_pred HHcCCCEEEECccCCcceEEee-ecC-CCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHH-cCCcceeeCHHh
Confidence 8999999988411 110 001 12345666666655 46899999999999999999998 599999999999
Q ss_pred hhCccchh
Q 023070 171 LENPALFA 178 (287)
Q Consensus 171 l~nP~lf~ 178 (287)
+..++...
T Consensus 369 ~~~~e~~~ 376 (491)
T 1zfj_A 369 AGTDEAPG 376 (491)
T ss_dssp TTBSSCCC
T ss_pred hCCCcCcc
Confidence 97665443
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-07 Score=83.74 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=108.5
Q ss_pred CCCEEEEecCCCH-HHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDP-EILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+..-+...++ +.+.++++.++ .||..+.+..|+. +++.-.+.+++|++.+ ++++.++.
T Consensus 131 ~v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDa 195 (370)
T 1chr_A 131 AIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDV 195 (370)
T ss_dssp EEEBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSSS---------------CSHHHHHHHHHHHHHSSTTCCEEEEC
T ss_pred ceeEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3455444544454 55666777666 6999999998742 4566678889999887 48999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+|+.+++.++++.+++.|+.+|. +.- .+.|++.++++++.+++||.+.+.+.+++++.++++...+|.
T Consensus 196 n~~~~~~~a~~~~~~l~~~~i~~iE-------qP~---~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~~~d~ 265 (370)
T 1chr_A 196 NQAWDEQVASVYIPELEALGVELIE-------QPV---GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDV 265 (370)
T ss_dssp TTCCCTTHHHHHTHHHHTTTEEEEE-------CCS---CTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTTSCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCE
Confidence 9999999999999999999988773 211 146788999999999999999999999999999999878999
Q ss_pred EEEeh
Q 023070 164 VLSAE 168 (287)
Q Consensus 164 VmiGR 168 (287)
|++--
T Consensus 266 v~~k~ 270 (370)
T 1chr_A 266 FSLKL 270 (370)
T ss_dssp EEECT
T ss_pred EEECc
Confidence 99843
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.6e-07 Score=77.78 Aligned_cols=144 Identities=9% Similarity=0.112 Sum_probs=96.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+-++.+||+.+.+.+. +.|+|+|.+|.+.+ ++.+.+.++.+++. ++.+.+-+....
T Consensus 64 ~~~~~v~lmv~d~~~~i~~~~--~agad~v~vH~~~~----------------~~~~~~~~~~i~~~-g~~igv~~~p~t 124 (228)
T 1h1y_A 64 KAYLDCHLMVTNPSDYVEPLA--KAGASGFTFHIEVS----------------RDNWQELIQSIKAK-GMRPGVSLRPGT 124 (228)
T ss_dssp CSEEEEEEESSCGGGGHHHHH--HHTCSEEEEEGGGC----------------TTTHHHHHHHHHHT-TCEEEEEECTTS
T ss_pred CCcEEEEEEecCHHHHHHHHH--HcCCCEEEECCCCc----------------ccHHHHHHHHHHHc-CCCEEEEEeCCC
Confidence 468899999999988755553 36899999995411 11124555565543 566666554433
Q ss_pred ChhhHHHHHHHHHHc--CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~--G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.. +..+.+.+. ++|+|.+.+...........+..++.++++++.. ++||++.|||+. +++.++++ .|+|++
T Consensus 125 ~~----e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~~-aGaD~v 198 (228)
T 1h1y_A 125 PV----EEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAAS-AGANCI 198 (228)
T ss_dssp CG----GGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHH-HTCCEE
T ss_pred CH----HHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHHH-cCCCEE
Confidence 32 223445555 8999988544322111111133457778888887 899999999986 89988887 499999
Q ss_pred EEehhhhhCccc
Q 023070 165 LSAESLLENPAL 176 (287)
Q Consensus 165 miGR~~l~nP~l 176 (287)
.+|++++..|+.
T Consensus 199 vvGsai~~~~d~ 210 (228)
T 1h1y_A 199 VAGSSIFGAAEP 210 (228)
T ss_dssp EESHHHHTSSCH
T ss_pred EECHHHHCCCCH
Confidence 999999987663
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-06 Score=76.43 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=101.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+..+=|..++.++.+| ...|+|+|=|+.. .+ +++.+.++++..++ .+..+.+-+.
T Consensus 120 ~lPVl~Kdfi~d~~qi~ea---~~~GAD~VlLi~a--------------~L-~~~~l~~l~~~a~~-lGl~~lvevh--- 177 (272)
T 3tsm_A 120 SLPALRKDFLFDPYQVYEA---RSWGADCILIIMA--------------SV-DDDLAKELEDTAFA-LGMDALIEVH--- 177 (272)
T ss_dssp SSCEEEESCCCSTHHHHHH---HHTTCSEEEEETT--------------TS-CHHHHHHHHHHHHH-TTCEEEEEEC---
T ss_pred CCCEEECCccCCHHHHHHH---HHcCCCEEEEccc--------------cc-CHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence 4577666666676654433 3458888877632 12 35667777777654 4666666542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+. +-++++.+.|++.|-+..|..... ..|++...++.+.+ ++|||+.|||+|++|+.++.+ .|+|+|.
T Consensus 178 ~~----eEl~~A~~~ga~iIGinnr~l~t~-----~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~-~Ga~gvL 247 (272)
T 3tsm_A 178 DE----AEMERALKLSSRLLGVNNRNLRSF-----EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEK-SGIGTFL 247 (272)
T ss_dssp SH----HHHHHHTTSCCSEEEEECBCTTTC-----CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHT-TTCCEEE
T ss_pred CH----HHHHHHHhcCCCEEEECCCCCccC-----CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHH-cCCCEEE
Confidence 22 224566789999999988865421 46788888888776 699999999999999999987 6999999
Q ss_pred EehhhhhCccchhchh
Q 023070 166 SAESLLENPALFAGFR 181 (287)
Q Consensus 166 iGR~~l~nP~lf~~~~ 181 (287)
||.+++..++.-..++
T Consensus 248 VG~almr~~d~~~~~~ 263 (272)
T 3tsm_A 248 IGESLMRQHDVAAATR 263 (272)
T ss_dssp ECHHHHTSSCHHHHHH
T ss_pred EcHHHcCCcCHHHHHH
Confidence 9999999888766554
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-07 Score=82.20 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=96.3
Q ss_pred CEEEEecCCCH--HHHHHHHHHHcCCCCEEEEec--cCCh---hhh-----hcCcccccccCChHHHHHHHHHHhhccCC
Q 023070 10 PLFVQFCANDP--EILLNAARRVEPYCDYVDINL--GCPQ---RIA-----RRGNYGAFLMDNLPLVKSLVEKLALNLNV 77 (287)
Q Consensus 10 p~~~Qi~g~~~--~~~~~aA~~~~~g~d~IdiN~--gcP~---~~~-----~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 77 (287)
-++.=|...+| +...+.++.+.+++|.|+|.+ .-|. +.. +.-..| -+.+.+.++++++++.+++
T Consensus 17 ~li~~i~~GdP~~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G----~~~~~~~~~v~~ir~~~~~ 92 (271)
T 1ujp_A 17 ALIPYLTAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKG----MSVQGALELVREVRALTEK 92 (271)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCCS
T ss_pred eEEEEecCCCCChHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCC
Confidence 35655655555 566667775544499999963 3342 011 111112 3567788999999988889
Q ss_pred cEEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEecc--------------------------CCCC------------
Q 023070 78 PVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR--------------------------TRDE------------ 116 (287)
Q Consensus 78 pv~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~~------------ 116 (287)
||.+ + ..++. .....+++.+.++|++++++-.- +...
T Consensus 93 Pii~-m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gf 170 (271)
T 1ujp_A 93 PLFL-M-TYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGF 170 (271)
T ss_dssp CEEE-E-CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSC
T ss_pred CEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCC
Confidence 9887 2 11110 12345667777777776655110 0000
Q ss_pred -----cCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 117 -----KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 117 -----~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
..+.+| ....+.++++++.+++||++.|||+|++++.++ .|||+|++|+++...
T Consensus 171 iy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~---~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 171 VYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSALVRA 235 (271)
T ss_dssp EEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHHHHHH
T ss_pred EEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh---cCCCEEEEChHHhcc
Confidence 000111 123578899999889999999999999999997 389999999998743
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.6e-07 Score=80.25 Aligned_cols=130 Identities=19% Similarity=0.204 Sum_probs=90.6
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCC-CChhhHHHHHHHHHHc
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-PNLQDTIKYAKMLEDA 102 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g-~~~~~~~~~a~~l~~~ 102 (287)
++...++.|+|.||+.+ ++|.....+.+.+.+-+.++++.++ .|+-|=+-.+ .+.++....++...++
T Consensus 116 Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~ea 185 (260)
T 3r12_A 116 EAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLA 185 (260)
T ss_dssp HHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEEe----------ehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 34446778999999864 2566666788889988899888774 4443323323 3556677788888999
Q ss_pred CCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCcc--EEEEehhhh
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 171 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad--~VmiGR~~l 171 (287)
|+|+|--..... ++.+..+.++.+++. .+++|-++|||+|.+++.++++ .||+ |...|+.++
T Consensus 186 GADfVKTSTGf~------~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~-aGA~RiGtS~g~~I~ 251 (260)
T 3r12_A 186 GAHFVKTSTGFG------TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIM-YGADRIGTSSGVKIV 251 (260)
T ss_dssp TCSEEECCCSSS------SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESCHHHHH
T ss_pred CcCEEEcCCCCC------CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-cCCceeecchHHHHH
Confidence 999995441111 123555555555554 3699999999999999999998 5999 555555554
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-07 Score=85.80 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=119.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChh------hhhc-----Cc------------ccccc--cCC
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQR------IARR-----GN------------YGAFL--MDN 60 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~------~~~~-----~~------------~G~~l--~~~ 60 (287)
+..|+-..+.+.+|+++++.++ .++.||..+.+.+|-... +.+. +. -|..+ ...
T Consensus 143 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (440)
T 3t6c_A 143 DGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAY 222 (440)
T ss_dssp SSEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHH
T ss_pred CeeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhh
Confidence 4456666677889999998887 567899999999874320 0000 00 00000 011
Q ss_pred hHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 61 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
.+...+.+++||+++ ++++.++.+.+|+..+++++++.+++.|+.+|- +.- .+.+++.++++++.+++
T Consensus 223 ~~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~i 292 (440)
T 3t6c_A 223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------DPV---APENTEWLKMLRQQSST 292 (440)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CSS---CGGGGGGHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------CCC---ChhhHHHHHHHHhhcCC
Confidence 456678899999887 689999999999999999999999999999883 211 13478888999999999
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
||.+.+.+.++.++.++++...+|.|++--+-.+...-
T Consensus 293 PIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~ 330 (440)
T 3t6c_A 293 PIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITP 330 (440)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHH
T ss_pred CEEeCcccCCHHHHHHHHHcCCccceeechhhhCCHHH
Confidence 99999999999999999998789999986655555443
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=81.31 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=112.2
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..++..+|+.+++.++ .++.||..+.++.|. +++.-.+.++++++.+ ++++.+..+
T Consensus 131 ~v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDaN 194 (379)
T 3r0u_A 131 SIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDAN 194 (379)
T ss_dssp EEEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEECT
T ss_pred eEEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 345667777889999888776 567899999999762 3566778889999887 589999999
Q ss_pred CCCChhhHHHHHHHHHH--cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 85 VFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~--~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
-+|+.++++++++.+++ .|+.+|- +.- .+.|++.++++++.+++||.++..+.++.++.++++...+|
T Consensus 195 ~~w~~~~A~~~~~~l~~~~~~l~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d 264 (379)
T 3r0u_A 195 QGWNLAQTKQFIEEINKYSLNVEIIE-------QPV---KYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACN 264 (379)
T ss_dssp TCCCHHHHHHHHHHHHTSCCCEEEEE-------CCS---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCS
T ss_pred CCcCHHHHHHHHHHHhhcCCCcEEEE-------CCC---CcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCC
Confidence 99999999999999999 6776662 211 13578999999999999999999999999999999987899
Q ss_pred EEEEehhh
Q 023070 163 GVLSAESL 170 (287)
Q Consensus 163 ~VmiGR~~ 170 (287)
.|++--+.
T Consensus 265 ~v~~k~~~ 272 (379)
T 3r0u_A 265 MINIKLAK 272 (379)
T ss_dssp EEEECHHH
T ss_pred EEEECccc
Confidence 99985443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-07 Score=79.93 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHc-C-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 9 RPLFVQFCA-NDPEILLNAARRVE-P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~~~~-~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
.+++.+..+ .++++..+.++.+. . +.+.|.++.-. +. ..+ ++...++++.+++.+ ++.+..-.
T Consensus 66 ~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~-------d~--~~~---~~e~~~~~~~a~~~~~~g~~vi~~~ 133 (264)
T 1xm3_A 66 YTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIG-------CS--RSL---LPDPVETLKASEQLLEEGFIVLPYT 133 (264)
T ss_dssp SEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBC-------CT--TTC---CBCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecC-------CC--ccc---ccchHHHHHHHHHHHCCCeEEEEEc
Confidence 456678877 78887666666543 3 45677776411 00 000 122345555554432 33333211
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
..+ .+.++++.+.|+++|...+...... .+..+++.++.+++..++||++.|||.+++|+.++++ .|||+
T Consensus 134 --~~~----~~~a~~~~~~gad~v~~~~~~~Gt~---~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~-~GAdg 203 (264)
T 1xm3_A 134 --SDD----VVLARKLEELGVHAIMPGASPIGSG---QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADG 203 (264)
T ss_dssp --CSC----HHHHHHHHHHTCSCBEECSSSTTCC---CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSE
T ss_pred --CCC----HHHHHHHHHhCCCEEEECCcccCCC---CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH-cCCCE
Confidence 112 2357788899999993323221111 1123478889999888999999999999999999998 59999
Q ss_pred EEEehhhhhCcc
Q 023070 164 VLSAESLLENPA 175 (287)
Q Consensus 164 VmiGR~~l~nP~ 175 (287)
|.+|++++..++
T Consensus 204 ViVGSAi~~a~d 215 (264)
T 1xm3_A 204 VLLNTAVSGADD 215 (264)
T ss_dssp EEESHHHHTSSS
T ss_pred EEEcHHHhCCCC
Confidence 999999886544
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=7e-08 Score=84.52 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+++++|+.+.+.|++.+++-.-+... .....+++.++++.+.+.+|+.+.|||+|.++++++|+ .|||-|.+|+.
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~---~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~-~GadkVii~t~ 106 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAK---DPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLD-CGVKRVVIGSM 106 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHH---CGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHH-TTCSEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCccc---ccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHH-cCCCEEEEccc
Confidence 478899999999999999986433221 11146789999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 107 a~~~p~li~e~~~ 119 (243)
T 4gj1_A 107 AIKDATLCLEILK 119 (243)
T ss_dssp TTTCHHHHHHHHH
T ss_pred cccCCchHHHHHh
Confidence 9999999887643
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-07 Score=85.90 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=112.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhh---cCcccc--------c--------ccCChHHHHHH
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR---RGNYGA--------F--------LMDNLPLVKSL 67 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~---~~~~G~--------~--------l~~~~~~~~~i 67 (287)
..|+-....+.+++++.+.++ .++.||..|-+..|.|..... ..+.+- . ..+..++..++
T Consensus 138 ~v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (426)
T 4e4f_A 138 GVMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKL 217 (426)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred ceeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 456666777889988877665 567899999999987642100 000000 0 00113456788
Q ss_pred HHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC
Q 023070 68 VEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 68 v~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg 145 (287)
+++||+++ ++++.+..+-+|+.+++.++++.+++.|+.+|- +.- .+.+++.++++++.+++||++.+.
T Consensus 218 v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~ 287 (426)
T 4e4f_A 218 FEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWME-------DPT---PAENQACFRLIRQHTVTPIAVGEV 287 (426)
T ss_dssp HHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------CCS---CCSSGGGGHHHHTTCCSCEEECTT
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------CCC---ChHHHHHHHHHHhcCCCCEEeCCC
Confidence 99999987 689999999999999999999999999999883 111 135778889999999999999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+++++.++++...+|.|++--+-.+
T Consensus 288 ~~~~~~~~~~i~~ga~d~v~~k~~~~G 314 (426)
T 4e4f_A 288 FNSIWDCKQLIEEQLIDYIRTTITHAG 314 (426)
T ss_dssp CCSGGGTHHHHHTTCCSEECCCTTTTT
T ss_pred cCCHHHHHHHHHcCCCCEEEeCccccC
Confidence 999999999999878999987543333
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.8e-07 Score=78.26 Aligned_cols=129 Identities=20% Similarity=0.280 Sum_probs=91.0
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-C----ChhhHHHHHH
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-P----NLQDTIKYAK 97 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~----~~~~~~~~a~ 97 (287)
++...++.|+|.||+.+ ++|..+..+.+.+.+-+.++++.++ ...+|+=+ + . +.++....++
T Consensus 85 E~~~Ai~~GAdEIDmVi----------nig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a~~ 153 (231)
T 3ndo_A 85 EAELAVAAGATEIDMVI----------DVGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADVCR 153 (231)
T ss_dssp HHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEEe----------ehHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHHHH
Confidence 34446788999999875 2566666788999999999988874 22346433 1 2 4556677888
Q ss_pred HHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCcc--EEEEehhhh
Q 023070 98 MLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 171 (287)
Q Consensus 98 ~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad--~VmiGR~~l 171 (287)
...++|+|+|--. |-.. ++.+..+.++.+++.+ +++|-++|||+|.+++.++++ .||+ |+..|+.++
T Consensus 154 ia~~aGADfVKTSTGf~~------~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~-aGa~RiGtS~g~~I~ 225 (231)
T 3ndo_A 154 VARDAGADFVKTSTGFHP------SGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLD-AGATRLGLSGSRAVL 225 (231)
T ss_dssp HHHHTTCSEEECCCSCCT------TCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESSHHHHH
T ss_pred HHHHHCcCEEEcCCCCCC------CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-hcchhcccchHHHHH
Confidence 8899999999543 2210 1235555566555543 699999999999999999998 5999 555555554
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.3e-07 Score=83.10 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=102.0
Q ss_pred CEEEEecC-CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 10 PLFVQFCA-NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g-~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
|+...++. .+++++.+.|+ .++.||+.|.++.+ |+...+.++++++.+ ++++.+..+-+
T Consensus 138 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~~ 199 (375)
T 1r0m_A 138 EVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK------------------PGWDVQPVRATREAFPDIRLTVDANSA 199 (375)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTTC
T ss_pred eeeEEecCCCCHHHHHHHHHHHHHhcccEEEEecC------------------hHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 44444443 48999988777 56789999999863 122345566776665 68899999889
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.++ +++++.+++.|+.+|- +. . .+.||+..+++++.+++||.+.+.+.+++++.++++...+|.|++
T Consensus 200 ~~~~~-~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 200 YTLAD-AGRLRQLDEYDLTYIE-------QP--L-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp CCGGG-HHHHHTTGGGCCSCEE-------CC--S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred CCHHH-HHHHHHHHhCCCcEEE-------CC--C-CcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence 99999 9999999999999884 21 1 146788999999999999999999999999999999888999998
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=82.23 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=111.3
Q ss_pred CCCCEEEEec---CCC--HH----HHHHHHH-HHcCCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc
Q 023070 7 EDRPLFVQFC---AND--PE----ILLNAAR-RVEPYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 75 (287)
Q Consensus 7 ~~~p~~~Qi~---g~~--~~----~~~~aA~-~~~~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 75 (287)
+..|+-..++ +.+ ++ .+++.++ .++.||..+.++ .|-+ ..+++.-.+++++|++.+
T Consensus 131 ~~v~~y~s~~~~~~~~~~~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~~~v~avR~a~ 197 (394)
T 3mqt_A 131 AQLTPYFTLYPSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPND-------------KVSDKEIVAYLRELREVI 197 (394)
T ss_dssp SSBCCEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCT-------------TSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHcCCCEEEecccCCC-------------ccCHHHHHHHHHHHHHHh
Confidence 3445555554 233 44 5555555 567899999994 4311 135677788999999886
Q ss_pred --CCcEEEEecCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 76 --NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 76 --~~pv~vKiR~g~-~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
++++.++.+-+| +.++++++++.+++.|+++|. +.- .+.+++.++++++.+++||++.+.+.+++++
T Consensus 198 G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iE-------eP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~ 267 (394)
T 3mqt_A 198 GWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIE-------ACL---QHDDLIGHQKLAAAINTRLCGAEMSTTRFEA 267 (394)
T ss_dssp CSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEE-------SCS---CTTCHHHHHHHHHHSSSEEEECTTCCHHHHH
T ss_pred CCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEE-------CCC---CcccHHHHHHHHhhCCCCEEeCCCcCCHHHH
Confidence 689999999999 999999999999999999883 211 1357899999999999999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCcc
Q 023070 153 QKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++++...+|.|++--+-.+...
T Consensus 268 ~~~l~~~~~d~v~~k~~~~GGit 290 (394)
T 3mqt_A 268 QEWLEKTGISVVQSDYNRCGGVT 290 (394)
T ss_dssp HHHHHHHCCSEECCCTTTSSCHH
T ss_pred HHHHHcCCCCeEecCccccCCHH
Confidence 99999888999998554444443
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=75.47 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhhHHHHHHHHH
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLE 100 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~~~~~a~~l~ 100 (287)
.++-..++.|+|.||+.+ ++|.....+.+.+.+-+.++++.++-+ .+|+=+ + .+.++....++...
T Consensus 75 ~e~~~Ai~~GAdevd~vi----------nig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~ 143 (220)
T 1ub3_A 75 LEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAI 143 (220)
T ss_dssp HHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecc----------cchhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHH
Confidence 334446788999999975 245555567888888888888877433 455322 1 34566777888889
Q ss_pred HcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHh--hCCCcEEEecCCCCHHHHHHHHHhcCcc--EEEEehhhh
Q 023070 101 DAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 171 (287)
Q Consensus 101 ~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipVi~nGgI~s~~da~~~l~~~gad--~VmiGR~~l 171 (287)
++|+|+|-.. |-+ ++.+..+.++.+++ ..++||-++|||+|.+++.++++ .|++ |+..|+.++
T Consensus 144 eaGADfVKTsTGf~-------~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~-aGa~RiG~S~g~~I~ 211 (220)
T 1ub3_A 144 RGGADFLKTSTGFG-------PRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLK-AGASRLGTSSGVALV 211 (220)
T ss_dssp HHTCSEEECCCSSS-------SCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSEEEETTHHHHH
T ss_pred HhCCCEEEeCCCCC-------CCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHH-CCCcccchhHHHHHH
Confidence 9999999543 222 12344555555555 45799999999999999999998 6999 666666554
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-07 Score=80.88 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
..++...+..|...+.+-+.. .+.+.+.++++++.+ ++||++.|||+|++++.++++ .|||+|.+|+++
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~--------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~-aGAD~VVVGSAa 259 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN--------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLD-SGADYVGFAGAL 259 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS--------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHH-TTCSEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEEcCCC--------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECchh
Confidence 456666678888888776432 146789999999999 899999999999999999998 599999999999
Q ss_pred hhC--ccchhchh
Q 023070 171 LEN--PALFAGFR 181 (287)
Q Consensus 171 l~n--P~lf~~~~ 181 (287)
+.| |.++.++.
T Consensus 260 v~d~~Pelv~e~a 272 (286)
T 3vk5_A 260 EQPDWRSALAEIA 272 (286)
T ss_dssp SSTTHHHHHHHHH
T ss_pred hcCCCHHHHHHHH
Confidence 999 88888765
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=82.45 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=96.2
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 16 CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 16 ~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.|-.++.+.++..++++|+|.|-|... . -..+.+.+.++.+++.. +++|.+-- --+.+
T Consensus 276 Vgv~~d~~eR~~aLv~AGvD~iviD~a--------h-------Ghs~~v~~~i~~ik~~~p~~~viaGN------VaT~e 334 (556)
T 4af0_A 276 IGTRPGDKDRLKLLAEAGLDVVVLDSS--------Q-------GNSVYQIEFIKWIKQTYPKIDVIAGN------VVTRE 334 (556)
T ss_dssp ECSSHHHHHHHHHHHHTTCCEEEECCS--------C-------CCSHHHHHHHHHHHHHCTTSEEEEEE------ECSHH
T ss_pred eccCccHHHHHHHHHhcCCcEEEEecc--------c-------cccHHHHHHHHHHHhhCCcceEEecc------ccCHH
Confidence 466789999999999999999888631 1 13566788888888765 67887662 22345
Q ss_pred HHHHHHHcCCCEEEEe------ccCCCCcCCCCccccHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 95 YAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh------~rt~~~~~~~~~~~~~~~i~~i~---~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
-++.|.++|+|.|.|- ..|+.. ..-|.+.+..+..+. +..++|||+.|||++.-|+.++|. .|||.||
T Consensus 335 ~a~~Li~aGAD~vkVGiGpGSiCtTr~v--~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAla-aGAd~VM 411 (556)
T 4af0_A 335 QAAQLIAAGADGLRIGMGSGSICITQEV--MAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALA-LGASAVM 411 (556)
T ss_dssp HHHHHHHHTCSEEEECSSCSTTBCCTTT--CCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEE
T ss_pred HHHHHHHcCCCEEeecCCCCcccccccc--cCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhh-cCCCEEE
Confidence 6778889999999883 123322 122345565555554 345799999999999999999999 6999999
Q ss_pred Eehhhh
Q 023070 166 SAESLL 171 (287)
Q Consensus 166 iGR~~l 171 (287)
+|.-+-
T Consensus 412 lGsllA 417 (556)
T 4af0_A 412 MGGLLA 417 (556)
T ss_dssp ESTTTT
T ss_pred Echhhc
Confidence 997553
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=80.78 Aligned_cols=136 Identities=11% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~vKi 83 (287)
..|+-..+...+|+.+.+.++ .++.||..|.+++|++ +++.-.+.++++++.+ ++++.+..
T Consensus 153 ~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDa 217 (391)
T 4e8g_A 153 RVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDG 217 (391)
T ss_dssp EEECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEEC
T ss_pred cEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeC
Confidence 346667788889999998777 5678999999998863 3455567778887764 57899999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+..++.++++.+++.++ +| ++. ..+++.++++++.+++||.+...+.+..++.++++...+|.
T Consensus 218 N~~w~~~~A~~~~~~L~~~~i-~i-------EeP-----~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~ 284 (391)
T 4e8g_A 218 NRSLPSRDALRLSRECPEIPF-VL-------EQP-----CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGLCDG 284 (391)
T ss_dssp TTCCCHHHHHHHHHHCTTSCE-EE-------ESC-----SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHhhcCe-EE-------ecC-----CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCE
Confidence 999999999999999999887 66 221 25789999999999999999999999999999999878999
Q ss_pred EEEehhhh
Q 023070 164 VLSAESLL 171 (287)
Q Consensus 164 VmiGR~~l 171 (287)
|++--+-.
T Consensus 285 v~ik~~~~ 292 (391)
T 4e8g_A 285 FGMKLTRI 292 (391)
T ss_dssp EEEEHHHH
T ss_pred EEeCcccc
Confidence 99854443
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=81.50 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=107.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhh---cCccc----ccccC---ChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR---RGNYG----AFLMD---NLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~---~~~~G----~~l~~---~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.+|+++++.++ .++.||..|.+..+.+....- ..+.| ..... ..+...+++++||+++ ++++.++.+
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN 221 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLN 221 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 47899988877 567899999998742211000 00111 11111 1456778899999886 689999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.++++++++.+++.|+.+|..- ..+++.++++++.+++||++.+.+.+++++.++++...+|.|
T Consensus 222 ~~~~~~~A~~~~~~L~~~~i~~iE~P------------~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 289 (409)
T 3go2_A 222 FNAKPEGYLKILRELADFDLFWVEID------------SYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDVA 289 (409)
T ss_dssp TCSCHHHHHHHHHHTTTSCCSEEECC------------CSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCeEEEeC------------cCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999998621 247888999999999999999999999999999998789999
Q ss_pred EEeh
Q 023070 165 LSAE 168 (287)
Q Consensus 165 miGR 168 (287)
++--
T Consensus 290 ~~k~ 293 (409)
T 3go2_A 290 IVDT 293 (409)
T ss_dssp EECH
T ss_pred EeCC
Confidence 9843
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=81.00 Aligned_cols=128 Identities=10% Similarity=0.083 Sum_probs=101.7
Q ss_pred CEEEEecC-CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 10 PLFVQFCA-NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g-~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
|+...++. .+++++.+.|+ .++.||+.|.++.+ |+...+.++++++.+ ++++.+..+-+
T Consensus 131 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~~ 192 (369)
T 2zc8_A 131 EVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIK------------------PGWDYEVLKAVREAFPEATLTADANSA 192 (369)
T ss_dssp EBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTTC
T ss_pred eceEEecCCCCHHHHHHHHHHHHHhhhheeeeecC------------------hhHHHHHHHHHHHHcCCCeEEEecCCC
Confidence 44444443 48999988776 56789999999863 122345566666665 68899999889
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.++ +++++.+++.|+.+|. +. . .+.|++..+++++.+++||.+.+.+.+++++.++++...+|.|++
T Consensus 193 ~~~~~-~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 193 YSLAN-LAQLKRLDELRLDYIE-------QP--L-AYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp CCGGG-HHHHHGGGGGCCSCEE-------CC--S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHH-HHHHHHHHhCCCcEEE-------CC--C-CcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 99999 9999999999999885 11 1 135788899999999999999999999999999999878999998
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.1e-07 Score=77.12 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.++....|...+-.|...+.+.+ +.. ..+.+.++++++.+ ++||++.|||+|++++.+++ . |||+|++|
T Consensus 139 ~e~~~~~a~~a~~~g~~~VYld~-sG~-------~~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~-gAD~VVVG 208 (228)
T 3vzx_A 139 MDDIVAYARVSELLQLPIFYLEY-SGV-------LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-E-HADVIVVG 208 (228)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC-TTS-------CCCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-T-TCSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEecC-CCC-------cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-h-CCCEEEEC
Confidence 35666677777778899998876 321 13789999999999 79999999999999999988 3 99999999
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
.++..||.++.++-
T Consensus 209 Sa~v~~p~~~~~~v 222 (228)
T 3vzx_A 209 NAVYEDFDRALKTV 222 (228)
T ss_dssp THHHHCHHHHHHHH
T ss_pred hHHhcCHHHHHHHH
Confidence 99999999988663
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=76.33 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+..+=|=.|+.++.+ ....|+|+|-|.. ..+. +.+.++++..+. .++.+.|-+.
T Consensus 106 ~lPvl~kdfI~d~~qi~~---a~~~GAD~VlL~~--------------~~l~--~~l~~l~~~a~~-lGl~~lvev~--- 162 (254)
T 1vc4_A 106 DLPLLRKDFVVDPFMLEE---ARAFGASAALLIV--------------ALLG--ELTGAYLEEARR-LGLEALVEVH--- 162 (254)
T ss_dssp CSCEEEESCCCSHHHHHH---HHHTTCSEEEEEH--------------HHHG--GGHHHHHHHHHH-HTCEEEEEEC---
T ss_pred CCCEEECCcCCCHHHHHH---HHHcCCCEEEECc--------------cchH--HHHHHHHHHHHH-CCCeEEEEEC---
Confidence 346555555566654433 3346888888862 2222 456666665433 3444433332
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+ + ++.+.+.|+++|-++.|.... ...|++...++.+.+ ++|+++.|||+|++|+.++.+ |+|
T Consensus 163 ~~~---E-~~~a~~~gad~IGvn~~~l~~-----~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~--Ga~ 231 (254)
T 1vc4_A 163 TER---E-LEIALEAGAEVLGINNRDLAT-----LHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG--LFD 231 (254)
T ss_dssp SHH---H-HHHHHHHTCSEEEEESBCTTT-----CCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT--TCS
T ss_pred CHH---H-HHHHHHcCCCEEEEccccCcC-----CCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc--CCC
Confidence 222 3 346678899999999886432 246777777777665 789999999999999998886 999
Q ss_pred EEEEehhhhhCccchhch
Q 023070 163 GVLSAESLLENPALFAGF 180 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~ 180 (287)
+|.||++++..++.-..+
T Consensus 232 gvlVGsAl~~~~d~~~~~ 249 (254)
T 1vc4_A 232 AVLIGTSLMRAPDLEAAL 249 (254)
T ss_dssp EEEECHHHHTSSCHHHHH
T ss_pred EEEEeHHHcCCCCHHHHH
Confidence 999999999988765544
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-06 Score=72.95 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred CEEEEecCCC--HHHHHHHHHHH-cCCCCEEEEec--cCCh---hhhhc-----CcccccccCChHHHHHHHHHHhhcc-
Q 023070 10 PLFVQFCAND--PEILLNAARRV-EPYCDYVDINL--GCPQ---RIARR-----GNYGAFLMDNLPLVKSLVEKLALNL- 75 (287)
Q Consensus 10 p~~~Qi~g~~--~~~~~~aA~~~-~~g~d~IdiN~--gcP~---~~~~~-----~~~G~~l~~~~~~~~~iv~~v~~~~- 75 (287)
.++.=|...+ .+...+.++.+ +.|+|.|+|++ ..|. +...+ -..| -+.+.+.++++++++.+
T Consensus 18 ~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G----~~~~~~~~~v~~ir~~~~ 93 (262)
T 2ekc_A 18 ALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNG----IRFEDVLELSETLRKEFP 93 (262)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHCT
T ss_pred eEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhhcC
Confidence 4554444444 46777777754 56899999973 3342 11110 1112 25677889999999888
Q ss_pred CCcEEEEecCCCChh---hHHHHHHHHHHcCCCEEEEecc--------------------------CCCC----------
Q 023070 76 NVPVSCKIRVFPNLQ---DTIKYAKMLEDAGCSLLAVHGR--------------------------TRDE---------- 116 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~---~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~~---------- 116 (287)
++|+.+ + ..++.- ....+++.+.++|+++++++.- +...
T Consensus 94 ~~Pi~~-m-~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~ 171 (262)
T 2ekc_A 94 DIPFLL-M-TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAAD 171 (262)
T ss_dssp TSCEEE-E-CCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCS
T ss_pred CCCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 899877 2 111111 1246677777777777766321 0000
Q ss_pred -------cCCCCc---c---c-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 117 -------KDGKKF---R---A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 117 -------~~~~~~---~---~-~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
..+..| + . ..+.++++++.+++||++.|||++++++.+ +. .|||+|++|++++..
T Consensus 172 gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~-~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 172 EMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IG-SFADGVVVGSALVKL 240 (262)
T ss_dssp SCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HH-TTSSEEEECHHHHHH
T ss_pred CCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HH-cCCCEEEECHHHHhh
Confidence 000111 0 1 136788999988999999999999999999 55 379999999999754
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-06 Score=79.12 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=108.1
Q ss_pred CHHHHHHH-HHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNA-ARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~a-A~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
+|++..+. ++. .+.||..+.+..|++. +......++...+.++++|+.+ ++++.++.+-+|+..++++
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~--------~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~ 217 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEV--------GRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIE 217 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTT--------CTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCc--------ccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHH
Confidence 56655554 444 3579999999998764 1222234667778899999886 6899999999999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+++.+++.|+.+|- +.-. +.|++.++++++.+++||.+...+.++.++.++++...+|.|++--+-.+..
T Consensus 218 ~~~~l~~~~i~~iE-------eP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGi 287 (388)
T 3tcs_A 218 VGHMLQDHGFCHFE-------EPCP---YWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGI 287 (388)
T ss_dssp HHHHHHHTTCCEEE-------CCSC---TTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSH
T ss_pred HHHHHhhcCCeEEE-------CCCC---ccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCH
Confidence 99999999998872 2111 3578999999999999999999999999999999987899998754444433
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-07 Score=79.57 Aligned_cols=155 Identities=15% Similarity=0.186 Sum_probs=93.3
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcE
Q 023070 10 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPV 79 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~~~-~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv 79 (287)
-++.=|... +++...+.++.+ +.|+|.|||. |.-|. +..++. .--+|. -+.+.+.++++++++. +|+
T Consensus 15 ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a-~~rAL~~g~~~~~~~~~~~~~r~~--~Pi 91 (252)
T 3tha_A 15 ANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADA-AKIALDQGVDIHSVFELLARIKTK--KAL 91 (252)
T ss_dssp EEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHH-HHHHHHTTCCHHHHHHHHHHCCCS--SEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHH-HHHHHHCCCCHHHHHHHHHHHhcC--CCE
Confidence 355555444 558888888855 5699999998 45554 111111 001111 2567788888888765 676
Q ss_pred EEEecCCCCh---hhHHHHHHHHHHcCCCEEEE--------------------------eccCCCC--------------
Q 023070 80 SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAV--------------------------HGRTRDE-------------- 116 (287)
Q Consensus 80 ~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~v--------------------------h~rt~~~-------------- 116 (287)
.+=. .++. .....|++.+.++|++.+++ .+.+...
T Consensus 92 vlm~--Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY 169 (252)
T 3tha_A 92 VFMV--YYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIY 169 (252)
T ss_dssp EEEC--CHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEE
T ss_pred EEEe--ccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEE
Confidence 5421 1110 01234555555555555544 1111100
Q ss_pred ---cCCCCccc------cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ---KDGKKFRA------DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ---~~~~~~~~------~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+|.. -.+.++++++.+++||++.+||++++++.++.+ +||||.+|++++
T Consensus 170 ~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~--~ADGVIVGSAiV 231 (252)
T 3tha_A 170 LLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK--VADGVIVGTSIV 231 (252)
T ss_dssp EECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT--TSSEEEECHHHH
T ss_pred EEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh--cCCEEEECHHHH
Confidence 01112211 135788888888999999999999999998765 599999999987
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6e-06 Score=72.95 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---cCCcEEEEecC-CC------ChhhHHHH
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCKIRV-FP------NLQDTIKY 95 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~pv~vKiR~-g~------~~~~~~~~ 95 (287)
+.+.++.|+|.|++... +|+ .+.+.+.+.+.++++. .++|+.+=..+ |. +.+.....
T Consensus 98 ve~Ai~~Ga~~v~~~~n----------ig~---~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a 164 (263)
T 1w8s_A 98 VEEAVSLGASAVGYTIY----------PGS---GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYA 164 (263)
T ss_dssp HHHHHHTTCSEEEEEEC----------TTS---TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEe----------cCC---cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHH
Confidence 33456789999998641 121 1233444444444432 37888765443 11 33444555
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC-cEEEecCCC--CHHHHHHHHH---hcCccEEEEehh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVR--HMEDVQKCLE---ETGCEGVLSAES 169 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i-pVi~nGgI~--s~~da~~~l~---~~gad~VmiGR~ 169 (287)
++...+.|+|+|-+. +. .+.+.++++++.+++ ||++.|||+ +.+++.+.+. +.|++|+.+||+
T Consensus 165 ~~~a~~~GAD~vkt~--~~---------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgra 233 (263)
T 1w8s_A 165 ARIALELGADAMKIK--YT---------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN 233 (263)
T ss_dssp HHHHHHHTCSEEEEE--CC---------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HHHHHHcCCCEEEEc--CC---------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehh
Confidence 788899999999776 11 246778888888777 999999999 9999988873 269999999999
Q ss_pred hhhCccchh
Q 023070 170 LLENPALFA 178 (287)
Q Consensus 170 ~l~nP~lf~ 178 (287)
++..|+...
T Consensus 234 I~~~~dp~~ 242 (263)
T 1w8s_A 234 VWQRRDALK 242 (263)
T ss_dssp HHTSTTHHH
T ss_pred hcCCcCHHH
Confidence 998877443
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=81.48 Aligned_cols=124 Identities=7% Similarity=-0.097 Sum_probs=100.7
Q ss_pred HHHHHHH-HHcCCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCC-ChhhHHHHH
Q 023070 22 ILLNAAR-RVEPYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYA 96 (287)
Q Consensus 22 ~~~~aA~-~~~~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~-~~~~~~~~a 96 (287)
++++.++ .++.||..+.++ .|.+ ..+++...+++++||+.+ ++++.+..+-+| +.+++++++
T Consensus 160 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~ 226 (394)
T 3mkc_A 160 GYAPLLEKAKAHNIRAVKVCVPIKA-------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLL 226 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTC-------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeCccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHH
Confidence 5555555 567899999994 4421 135677788899999887 689999999999 999999999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
+.+++.|+++|. +.. .+.+++.++++++.+++||++.+.+.+++++.++++...+|.|++--
T Consensus 227 ~~L~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 288 (394)
T 3mkc_A 227 NSIEDLELYFAE-------ATL---QHDDLSGHAKLVENTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDY 288 (394)
T ss_dssp HHTGGGCCSEEE-------SCS---CTTCHHHHHHHHHHCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred HHhhhcCCeEEE-------CCC---CchhHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCc
Confidence 999999999883 211 13578999999999999999999999999999999987899998743
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=82.20 Aligned_cols=103 Identities=18% Similarity=0.310 Sum_probs=79.3
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
+++.+.++++.+++. +.++.++++. ....+.++.+.+.|++.+.+|++...+....+ ..+|+.+.++++.+++|
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~----~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~-~~~~~~i~~l~~~~~~p 213 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSP----QNVREIAPIVIKAGADLLVIQGTLISAEHVNT-GGEALNLKEFIGSLDVP 213 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECT----TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC------CHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCC----ccHHHHHHHHHHCCCCEEEEeCCccccccCCC-cccHHHHHHHHHhcCCC
Confidence 788899999998876 8999998864 24567788888999999999976532222111 12677788999999999
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
|++ |||.|++++..+++ .|||+|++|+|.
T Consensus 214 vi~-ggi~t~e~a~~~~~-~Gad~i~vg~Gg 242 (393)
T 2qr6_A 214 VIA-GGVNDYTTALHMMR-TGAVGIIVGGGE 242 (393)
T ss_dssp EEE-ECCCSHHHHHHHHT-TTCSEEEESCCS
T ss_pred EEE-CCcCCHHHHHHHHH-cCCCEEEECCCc
Confidence 999 89999999999987 699999998754
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-07 Score=93.68 Aligned_cols=111 Identities=15% Similarity=0.079 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAV 132 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~i 132 (287)
+++.+.++++.+++.. ++||.+|+-... ...+.|+.+.++|+|+|+|.|........ ..+.+....+.++
T Consensus 1011 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev 1087 (1520)
T 1ofd_A 1011 SIEDLAQLIYDLHQINPEAQVSVKLVAEI---GIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEV 1087 (1520)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECST---THHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEecCCC---ChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHH
Confidence 4566788999999887 899999975432 33456788999999999997654221100 0111223445555
Q ss_pred HhhC-------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 133 KNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 133 ~~~~-------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+.+ ++|||+.|||.|..|+.+++. .|||+|++||+++.-.
T Consensus 1088 ~~al~~~glr~~IpVIAdGGIrtG~DVakALa-LGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1088 HRVLMENQLRDRVLLRADGGLKTGWDVVMAAL-MGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp HHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH-TTCSEEECSHHHHHHT
T ss_pred HHHHHhcCCCCCceEEEECCCCCHHHHHHHHH-cCCCeeEEcHHHHHHH
Confidence 4432 699999999999999999998 5999999999997644
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.4e-07 Score=93.56 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHHHH
Q 023070 61 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAVK 133 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~i~ 133 (287)
++.+.++++.+++.. ++||.+|+-... ...+.|+.+.++|+|+|+|.|........ ..+.+....+.++.
T Consensus 977 ~edl~~~I~~Lk~~~~~~PV~VKlv~~~---gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~ 1053 (1479)
T 1ea0_A 977 IEDLAQLIYDLKQINPDAKVTVKLVSRS---GIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVH 1053 (1479)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECCT---THHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCC---ChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHH
Confidence 466788999999887 899999975532 23446888999999999997553221100 01122234555555
Q ss_pred hhC-------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 134 NAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 134 ~~~-------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+.+ ++|||+.|||+|..|+.+++. .|||+|++||+++..
T Consensus 1054 ~al~~~glr~~VpVIAdGGIrtG~DVakALa-LGAdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1054 QVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM-LGAEEFGIGTASLIA 1099 (1479)
T ss_dssp HHHHTTTCTTTSEEEEESSCCSHHHHHHHHH-TTCSEEECCHHHHHH
T ss_pred HHHHHcCCCCCceEEEECCCCCHHHHHHHHH-cCCCeeeEcHHHHHH
Confidence 542 699999999999999999998 599999999999763
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.8e-07 Score=77.65 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++.+.+.|+|+|.+......+......+.+|+.++++++..++||++.||| +++++.++++ .|+|+|.+|++++..++
T Consensus 123 ~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~-~Ga~gv~vgs~i~~~~d 200 (221)
T 1yad_A 123 AVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQ-AGADGIAVMSGIFSSAE 200 (221)
T ss_dssp HHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHH-TTCSEEEESHHHHTSSS
T ss_pred HHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEhHHhhCCCC
Confidence 566778999999887642222111111467899999988889999999999 8999999998 69999999999987665
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=80.75 Aligned_cols=137 Identities=9% Similarity=0.024 Sum_probs=107.3
Q ss_pred CCEEEEec-CCC--HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 9 RPLFVQFC-AND--PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 9 ~p~~~Qi~-g~~--~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
.|+-..++ +.+ |+.+++.++ .++.||..|.++++ | ..+ .+.+++|++.+ ++++.+.
T Consensus 150 v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~-------------~~d----~~~v~avR~a~G~~~~L~vD 211 (400)
T 3mwc_A 150 IESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-P-------------GWD----VEPLQETRRAVGDHFPLWTD 211 (400)
T ss_dssp EEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-T-------------TBS----HHHHHHHHHHHCTTSCEEEE
T ss_pred EEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-c-------------chH----HHHHHHHHHhcCCCCEEEEe
Confidence 45555554 335 999988777 56779999999973 1 122 45677777765 6899999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+-+|+.++ .++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+...+.++.++.++++...+|
T Consensus 212 aN~~w~~~~-~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d 280 (400)
T 3mwc_A 212 ANSSFELDQ-WETFKAMDAAKCLFHE-------QPL---HYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISN 280 (400)
T ss_dssp CTTCCCGGG-HHHHHHHGGGCCSCEE-------SCS---CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHH-HHHHHHHHhcCCCEEe-------CCC---ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCC
Confidence 999999988 8999999999998883 211 13579999999999999999999999999999999988899
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
.|++--+-.+..
T Consensus 281 ~v~~k~~~~GGi 292 (400)
T 3mwc_A 281 IWNIKIQRVGGL 292 (400)
T ss_dssp EEEECHHHHTSH
T ss_pred EEEEcchhhCCH
Confidence 999865544443
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-06 Score=77.83 Aligned_cols=139 Identities=12% Similarity=0.150 Sum_probs=108.6
Q ss_pred CCEEEEecCCCHHH-HHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 9 RPLFVQFCANDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~-~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.|+-..+...+++. +.++++.++ .||..+.+..|+. +++.-.+.++++++.+ ++++.+..+
T Consensus 138 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN 202 (382)
T 3dgb_A 138 LPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG---------------EVDRDLAHVIAIKKALGDSASVRVDVN 202 (382)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred eeEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 45544555556665 455556666 5899999997642 3455567788888876 488999999
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++.++++.+++.|+.+|- +.- .+.|++.++++++.+++||.+...+.++.++.++++...+|.|
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v 272 (382)
T 3dgb_A 203 QAWDEAVALRACRILGGNGIDLIE-------QPI---SRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVF 272 (382)
T ss_dssp TCBCHHHHHHHHHHHHTTTCCCEE-------CCB---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCcCeee-------CCC---CccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 999999999999999999998872 211 1358999999999999999999999999999999998889999
Q ss_pred EEehhhhh
Q 023070 165 LSAESLLE 172 (287)
Q Consensus 165 miGR~~l~ 172 (287)
++--+-.+
T Consensus 273 ~~k~~~~G 280 (382)
T 3dgb_A 273 ALKIAKNG 280 (382)
T ss_dssp EECHHHHT
T ss_pred EecccccC
Confidence 98544443
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-06 Score=77.16 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=109.2
Q ss_pred CCCEEEEecCCCHHHHHH-HHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEILLN-AARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~-aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-..+...+++.+.+ +++.++ .||..+.+..|+. +++.-.+.++++++.+ ++++.+..
T Consensus 136 ~v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDa 200 (381)
T 3fcp_A 136 ALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR---------------ELATDLRHTRAIVEALGDRASIRVDV 200 (381)
T ss_dssp EEEBCEEECSSCHHHHHHHHHHHTC----CEEEEECCSS---------------CHHHHHHHHHHHHHHTCTTCEEEEEC
T ss_pred ceeeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCCC---------------ChHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 345555565567776544 555666 4899999998642 3556677888998887 47899999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+..++.++++.+++.|+.+| ++.- .+.|++.++++++.+++||.+...+.+..++.++++..++|.
T Consensus 201 N~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~ 270 (381)
T 3fcp_A 201 NQAWDAATGAKGCRELAAMGVDLI-------EQPV---SAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQGFTGA 270 (381)
T ss_dssp TTCBCHHHHHHHHHHHHHTTCSEE-------ECCB---CTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHhhcCccce-------eCCC---CcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCE
Confidence 999999999999999999999888 2211 135899999999999999999999999999999999888999
Q ss_pred EEEehhhhhCcc
Q 023070 164 VLSAESLLENPA 175 (287)
Q Consensus 164 VmiGR~~l~nP~ 175 (287)
|++--+-.+...
T Consensus 271 v~~k~~~~GGit 282 (381)
T 3fcp_A 271 YALKIAKAGGPN 282 (381)
T ss_dssp EEECHHHHTSTT
T ss_pred EEecccccCCHH
Confidence 998655444433
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=83.26 Aligned_cols=121 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-C-CcEEEEecCCCChhhHHHHHHHHHHcCCCE
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-N-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 106 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~-~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~ 106 (287)
+++.|++.+.+... . | ++..+.+.++.+++.. + +||.++--. ..+-++.+.++|+++
T Consensus 250 l~e~gv~~l~Vd~~--------~--g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~------t~~~a~~l~~aGad~ 308 (503)
T 1me8_A 250 LVEAGADVLCIDSS--------D--G-----FSEWQKITIGWIREKYGDKVKVGAGNIV------DGEGFRYLADAGADF 308 (503)
T ss_dssp HHHHTCSEEEECCS--------C--C-----CSHHHHHHHHHHHHHHGGGSCEEEEEEC------SHHHHHHHHHHTCSE
T ss_pred HHhhhccceEEecc--------c--C-----cccchhhHHHHHHHhCCCCceEeecccc------CHHHHHHHHHhCCCe
Confidence 45568887776532 0 1 2333556667777665 5 888877322 234567788999999
Q ss_pred EEEeccCCC----Cc-CCCCccccHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 107 LAVHGRTRD----EK-DGKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 107 I~vh~rt~~----~~-~~~~~~~~~~~i~~i~~~~---------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.| |.... .+ ....+.+.+..+.++.+.+ ++|||+.|||+++.|+.++|. .|||+||+|+.++.
T Consensus 309 I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAla-lGA~~V~iG~~~~~ 386 (503)
T 1me8_A 309 IKI-GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-MGADFIMLGRYFAR 386 (503)
T ss_dssp EEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHT
T ss_pred EEe-cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhc
Confidence 988 43221 00 0111234566666665432 699999999999999999998 59999999999874
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-06 Score=73.76 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=99.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc--cCCcEEEEec
Q 023070 10 PLFVQFCANDPEILLNAARRVE-PYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNVPVSCKIR 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~-~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--~~~pv~vKiR 84 (287)
-+..+|...|...+.+..+.++ .|+|. +|+--|-=++|.+ +| .++++++++. .++|+.+++-
T Consensus 6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~---~G----------~~~v~~ir~~~~~~~~~dvhLm 72 (228)
T 3ovp_A 6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT---FG----------HPVVESLRKQLGQDPFFDMHMM 72 (228)
T ss_dssp EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC---BC----------HHHHHHHHHHHCSSSCEEEEEE
T ss_pred EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc---cC----------HHHHHHHHHhhCCCCcEEEEEE
Confidence 3678999999999999998765 57875 4443331112221 22 3466677766 4788888765
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCC--------------------------C-----------------cCCCC
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E-----------------KDGKK 121 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------------------~-----------------~~~~~ 121 (287)
.. +. ..+++.+.++|++.|++|.-... . ..++.
T Consensus 73 v~-~p---~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~ 148 (228)
T 3ovp_A 73 VS-KP---EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFG 148 (228)
T ss_dssp CS-CG---GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTC
T ss_pred eC-CH---HHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCC
Confidence 42 22 34566777899999999862110 0 00111
Q ss_pred c----cccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 122 F----RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 122 ~----~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
| +..++.++++++.. ++||.+.|||+ ++.+.++.+ .|||.+.+||+++..++.
T Consensus 149 Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~-aGAd~~VvGsaIf~a~dp 206 (228)
T 3ovp_A 149 GQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAE-AGANMIVSGSAIMRSEDP 206 (228)
T ss_dssp SCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHH-HTCCEEEESHHHHTCSCH
T ss_pred CcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCCH
Confidence 1 23456688888765 68999999995 799999988 599999999998876653
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=72.84 Aligned_cols=142 Identities=11% Similarity=0.164 Sum_probs=90.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEecc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.+-++-++|+.+.+.+ .+.|+|+|-+|.. .+ +...++++.+++. ++.+.+-+..
T Consensus 68 ~~~~~v~l~vnd~~~~v~~~--~~~Gad~v~vh~~~~~~-----------------~~~~~~~~~~~~~-g~~ig~~~~p 127 (230)
T 1rpx_A 68 DLPLDVHLMIVEPDQRVPDF--IKAGADIVSVHCEQSST-----------------IHLHRTINQIKSL-GAKAGVVLNP 127 (230)
T ss_dssp CSCEEEEEESSSHHHHHHHH--HHTTCSEEEEECSTTTC-----------------SCHHHHHHHHHHT-TSEEEEEECT
T ss_pred CCcEEEEEEecCHHHHHHHH--HHcCCCEEEEEecCccc-----------------hhHHHHHHHHHHc-CCcEEEEeCC
Confidence 46888999999988766655 4579999999842 11 1124555555443 5556655554
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCC-cCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+.+.+.. +.+ ..++++|.+.+..... .... .+..++.++++++.+ ++|+++.|||+ ++++.++++ .
T Consensus 128 ~t~~e~~----~~~-~~~~d~vl~~~~~pg~~g~~~-~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~-a 199 (230)
T 1rpx_A 128 GTPLTAI----EYV-LDAVDLVLIMSVNPGFGGQSF-IESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIE-A 199 (230)
T ss_dssp TCCGGGG----TTT-TTTCSEEEEESSCTTCSSCCC-CTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHH-H
T ss_pred CCCHHHH----HHH-HhhCCEEEEEEEcCCCCCccc-cHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH-c
Confidence 4332221 111 2579998554433211 0111 122345566666655 79999999998 799988887 5
Q ss_pred CccEEEEehhhhhCccch
Q 023070 160 GCEGVLSAESLLENPALF 177 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf 177 (287)
|+|+|.+|+++...++.-
T Consensus 200 Gad~vvvgSaI~~a~dp~ 217 (230)
T 1rpx_A 200 GANALVAGSAVFGAPDYA 217 (230)
T ss_dssp TCCEEEESHHHHTSSCHH
T ss_pred CCCEEEEChhhhCCCCHH
Confidence 999999999999866643
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-06 Score=69.60 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCAND-PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~-~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+++-+...| |+.+.+.+ ++.|+|+|-+|.+.. .+.+.++++.+++. +.++.+-+- .
T Consensus 53 ~~~i~~~l~~~di~~~~~~~a--~~~Gad~v~vh~~~~----------------~~~~~~~~~~~~~~-g~~~gv~~~-s 112 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEADIA--FKAGADLVTVLGSAD----------------DSTIAGAVKAAQAH-NKGVVVDLI-G 112 (207)
T ss_dssp TSEEEEEEEECSCHHHHHHHH--HHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-T
T ss_pred CCeEEEEEEecCccHHHHHHH--HhCCCCEEEEeccCC----------------hHHHHHHHHHHHHc-CCceEEEEe-c
Confidence 568888777788 88866433 457999999996422 22344555555432 455444331 1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
. .+..+.++.+.+.|++++.++ +.+... .+.. ... +.++++++. ++||++.|||+ ++++.++++ .|||+|.
T Consensus 113 ~--~~p~~~~~~~~~~g~d~v~~~~~~~~~~-~g~~-~~~-~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~-aGad~vv 184 (207)
T 3ajx_A 113 I--EDKATRAQEVRALGAKFVEMHAGLDEQA-KPGF-DLN-GLLAAGEKA-RVPFSVAGGVK-VATIPAVQK-AGAEVAV 184 (207)
T ss_dssp C--SSHHHHHHHHHHTTCSEEEEECCHHHHT-STTC-CTH-HHHHHHHHH-TSCEEEESSCC-GGGHHHHHH-TTCSEEE
T ss_pred C--CChHHHHHHHHHhCCCEEEEEecccccc-cCCC-chH-HHHHHhhCC-CCCEEEECCcC-HHHHHHHHH-cCCCEEE
Confidence 1 222233455667799999554 443211 1110 122 556665544 78999999998 788888887 6999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+||+++..++
T Consensus 185 vGsaI~~~~d 194 (207)
T 3ajx_A 185 AGGAIYGAAD 194 (207)
T ss_dssp ESHHHHTSSS
T ss_pred EeeeccCCCC
Confidence 9999987655
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=75.24 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=98.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhh---------hcCcccccccCChHHH-------------
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIA---------RRGNYGAFLMDNLPLV------------- 64 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~---------~~~~~G~~l~~~~~~~------------- 64 (287)
+.|+++-+.+.+++++.+.++. ++.|++.|++++-+|.... ..-++|. ++ +.+.+
T Consensus 12 ~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~ 89 (207)
T 2yw3_A 12 ESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVS 89 (207)
T ss_dssp HHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEE
T ss_pred hCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEc
Confidence 4689999999999999888875 4668999999998886421 1123343 22 22222
Q ss_pred ----HHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccc-cHHHHHHHHhhC-CC
Q 023070 65 ----KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNAL-RI 138 (287)
Q Consensus 65 ----~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~-~i 138 (287)
.++++..+. .++|+...+. + ..+ +....+.|+|+|.+++- . .. -.+.++.++... ++
T Consensus 90 ~~~d~~v~~~~~~-~g~~~i~G~~---t---~~e-~~~A~~~Gad~v~~fpa---~------~~gG~~~lk~l~~~~~~i 152 (207)
T 2yw3_A 90 PGLLEEVAALAQA-RGVPYLPGVL---T---PTE-VERALALGLSALKFFPA---E------PFQGVRVLRAYAEVFPEV 152 (207)
T ss_dssp SSCCHHHHHHHHH-HTCCEEEEEC---S---HHH-HHHHHHTTCCEEEETTT---T------TTTHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHH-hCCCEEecCC---C---HHH-HHHHHHCCCCEEEEecC---c------cccCHHHHHHHHhhCCCC
Confidence 233333332 3455544321 2 222 34556789999999641 1 11 257788888877 89
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
||++.|||+ ++++.++++ .|+++|.+|++++.
T Consensus 153 pvvaiGGI~-~~n~~~~l~-aGa~~vavgSai~~ 184 (207)
T 2yw3_A 153 RFLPTGGIK-EEHLPHYAA-LPNLLAVGGSWLLQ 184 (207)
T ss_dssp EEEEBSSCC-GGGHHHHHT-CSSBSCEEESGGGS
T ss_pred cEEEeCCCC-HHHHHHHHh-CCCcEEEEehhhhC
Confidence 999999997 699999998 69999999999876
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=82.22 Aligned_cols=133 Identities=11% Similarity=-0.019 Sum_probs=104.0
Q ss_pred ecCCCH-------HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 15 FCANDP-------EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 15 i~g~~~-------~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
+.+.+| +.+.++|+ .++.||+.|.++.|-... +-.. .++++...++++++++.+ ++++.+...
T Consensus 137 ~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~------~~~~-~~~~~~~~e~v~avR~~~g~d~~l~vDan 209 (392)
T 3p3b_A 137 FDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGR------HMPL-WEGTKRDIAIVRGISEVAGPAGKIMIDAN 209 (392)
T ss_dssp BTTTTCCSHHHHHHHHHHHHHHHHHTTCCCEEEECCHHHH------TSCH-HHHHHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred cCCCCcccccchHHHHHHHHHHHHHhCCCEEEECcCcCcc------cCCc-cccHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 333678 88888776 567799999998762110 0001 125677788999998876 688999988
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhc
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
-+|+.++++++++.+++.|+++|- + ..+ .+++..+++++. +++||++.+ +.+++++.++++..
T Consensus 210 ~~~~~~~ai~~~~~l~~~~i~~iE-------~--P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~ 277 (392)
T 3p3b_A 210 NAYNLNLTKEVLAALSDVNLYWLE-------E--AFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRG 277 (392)
T ss_dssp TCCCHHHHHHHHHHTTTSCEEEEE-------C--SSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEe-------c--CCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcC
Confidence 899999999999999999887663 1 111 578889999988 899999999 99999999999987
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
.+|.|++
T Consensus 278 ~~d~v~i 284 (392)
T 3p3b_A 278 RVDVLQY 284 (392)
T ss_dssp SCCEECC
T ss_pred CCCEEEe
Confidence 7999887
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=75.35 Aligned_cols=144 Identities=13% Similarity=0.203 Sum_probs=92.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.+..+||+.|.+.+ ++.|+|+|-++.... + .+...+.++.+++ .+.-+.+-+....
T Consensus 62 ~~~~~vhlmv~dp~~~i~~~--~~aGadgv~vh~e~~----------~-----~~~~~~~~~~i~~-~g~~~gv~~~p~t 123 (230)
T 1tqj_A 62 KKTLDVHLMIVEPEKYVEDF--AKAGADIISVHVEHN----------A-----SPHLHRTLCQIRE-LGKKAGAVLNPST 123 (230)
T ss_dssp CSEEEEEEESSSGGGTHHHH--HHHTCSEEEEECSTT----------T-----CTTHHHHHHHHHH-TTCEEEEEECTTC
T ss_pred CCcEEEEEEccCHHHHHHHH--HHcCCCEEEECcccc----------c-----chhHHHHHHHHHH-cCCcEEEEEeCCC
Confidence 46899999999998877554 445899999994310 1 0123455555543 2444444443333
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
..+. .+.+. .++|+|.+.+...........+..++.++++++.. ++||.+-|||+. +++.++.+ .|||
T Consensus 124 ~~e~----~~~~~-~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~-aGad 196 (230)
T 1tqj_A 124 PLDF----LEYVL-PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLE-AGAN 196 (230)
T ss_dssp CGGG----GTTTG-GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHH-HTCC
T ss_pred cHHH----HHHHH-hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHH-cCCC
Confidence 2221 22222 37998866443322111111245577888888766 799999999987 99998887 5999
Q ss_pred EEEEehhhhhCccc
Q 023070 163 GVLSAESLLENPAL 176 (287)
Q Consensus 163 ~VmiGR~~l~nP~l 176 (287)
++.+|++++..|+.
T Consensus 197 ~vvvGSai~~a~d~ 210 (230)
T 1tqj_A 197 AIVAGSAVFNAPNY 210 (230)
T ss_dssp EEEESHHHHTSSCH
T ss_pred EEEECHHHHCCCCH
Confidence 99999999987664
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.9e-06 Score=78.33 Aligned_cols=150 Identities=9% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhh-----cCccccccc---CChHHHHHHHHHHhhcc--
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIAR-----RGNYGAFLM---DNLPLVKSLVEKLALNL-- 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~-----~~~~G~~l~---~~~~~~~~iv~~v~~~~-- 75 (287)
+..|+...+.+.+++++.+.++ .++.||..+.+..|.+..+.. ......... ++++...+.++++++.+
T Consensus 141 ~~v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~ 220 (421)
T 4hnl_A 141 TAIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGN 220 (421)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence 4567777888889999988777 567899999999886542111 111112222 23456677788888877
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.+.+...-+|+.++++++++.+++.++.+| ++.- .+.|++.++++++.+++||.+.-.+.++.++.++
T Consensus 221 ~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~ 290 (421)
T 4hnl_A 221 QFQMLHDVHERLHPNQAIQFAKAAEPYQLFFL-------EDIL---PPDQSHWLTQLRSQSATPIATGELFNNPMEWQEL 290 (421)
T ss_dssp SSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE-------ECCS---CGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHH
T ss_pred CceEeccccccCCHHHHHHHHHHhhhhhhccc-------ccCC---cccchHHHHHHHhcCCCCeecCcceehhHHHHHH
Confidence 57888888889999999999999999999887 2211 1357888999999999999999999999999999
Q ss_pred HHhcCccEEEE
Q 023070 156 LEETGCEGVLS 166 (287)
Q Consensus 156 l~~~gad~Vmi 166 (287)
++...+|.|++
T Consensus 291 i~~~a~d~v~~ 301 (421)
T 4hnl_A 291 VKNRQIDFMRA 301 (421)
T ss_dssp HHTTCCSEECC
T ss_pred HhcCCceEEEe
Confidence 99878998876
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.4e-07 Score=79.12 Aligned_cols=159 Identities=22% Similarity=0.236 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCCHH-HHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEe
Q 023070 7 EDRPLFVQFCANDPE-ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~-~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKi 83 (287)
.+.|++.|+.+.||- .+....+.+ +.||.+| +|+ |..-...+.|...|..+.--..++++.|+.+-..- +|+=+
T Consensus 93 ~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~ 169 (286)
T 2p10_A 93 RHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPY 169 (286)
T ss_dssp SSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCE
T ss_pred CCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 378999999999985 444444544 4599999 997 43333344455555554444445555554332111 11110
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEecc-CCCCcCCCCc---ccc-HHHHHHHHhh-----CCCcEEEec-CCCCHHHH
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGR-TRDEKDGKKF---RAD-WNAIKAVKNA-----LRIPVLANG-NVRHMEDV 152 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~r-t~~~~~~~~~---~~~-~~~i~~i~~~-----~~ipVi~nG-gI~s~~da 152 (287)
-...+-++.+.++|+|.|.+|.. |..+.-+... ..+ -+.+.++.+. .++.|++.| +|.+++|+
T Consensus 170 ------v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv 243 (286)
T 2p10_A 170 ------VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDA 243 (286)
T ss_dssp ------ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHH
T ss_pred ------cCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHH
Confidence 11234466677999999999955 3322111110 122 2344443332 356666555 99999999
Q ss_pred HHHHHhc-CccEEEEehhhhhCc
Q 023070 153 QKCLEET-GCEGVLSAESLLENP 174 (287)
Q Consensus 153 ~~~l~~~-gad~VmiGR~~l~nP 174 (287)
..+++.+ |+||+..++++..=|
T Consensus 244 ~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 244 RFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp HHHHHHCTTCCEEEESHHHHHHH
T ss_pred HHHHhcCCCccEEEeehhhhcCC
Confidence 9999854 699999999987655
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.9e-06 Score=92.13 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=98.7
Q ss_pred CCCEEEEecCCCHHH---HHHHHH-HHcCCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 8 DRPLFVQFCANDPEI---LLNAAR-RVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~---~~~aA~-~~~~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
++|+++.++-.+|+. +.+..+ +++.|++. |.+.+|.|. ++.+.++++. .++++..
T Consensus 637 ~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~---------------~e~~~~~l~~----~gi~~i~ 697 (2060)
T 2uva_G 637 GRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPS---------------IEVANEYIQT----LGIRHIS 697 (2060)
T ss_dssp TCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCC---------------HHHHHHHHHH----SCCSEEE
T ss_pred CCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCC---------------HHHHHHHHHH----cCCeEEE
Confidence 578888887766653 223333 34557766 777666552 2234444443 2666653
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEE---EeccCCCCcCCCC--ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLA---VHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~---vh~rt~~~~~~~~--~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
.+ . +..++.+.+..+.++|+|.|+ +.|....+..+.. ...-+..+.++++.+++|||+.|||.+.+++.++|
T Consensus 698 ~v-~--~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aal 774 (2060)
T 2uva_G 698 FK-P--GSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYL 774 (2060)
T ss_dssp EC-C--CSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHH
T ss_pred ec-C--CHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHh
Confidence 32 2 336677777788999999998 6665443322110 01235778999999999999999999999999999
Q ss_pred -----------HhcCccEEEEehhhhhCcc
Q 023070 157 -----------EETGCEGVLSAESLLENPA 175 (287)
Q Consensus 157 -----------~~~gad~VmiGR~~l~nP~ 175 (287)
. .|||+|++|+.++.-+.
T Consensus 775 tg~ws~~~g~pa-lGAdgV~~GT~f~~t~E 803 (2060)
T 2uva_G 775 TGSWSTKFGYPP-MPFDGCMFGSRMMTAKE 803 (2060)
T ss_dssp HTCGGGTTTSCC-CCCSCEEESGGGGGBTT
T ss_pred cCcchhhcCCCC-CCCCEEEEchhhhcCcC
Confidence 6 59999999999987654
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-06 Score=74.51 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=100.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHc-CCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 10 PLFVQFCANDPEILLNAARRVE-PYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~-~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
.+..+|...|...+.+..+.++ .|+|. +|+--|-=++|.. +| .++++++++.. +.|+.+.+-.
T Consensus 29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit---~G----------~~~v~~lr~~~p~~~ldvHLmv 95 (246)
T 3inp_A 29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLT---FG----------PMVLKALRDYGITAGMDVHLMV 95 (246)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC---CC----------HHHHHHHHHHTCCSCEEEEEEC
T ss_pred eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchh---cC----------HHHHHHHHHhCCCCeEEEEEee
Confidence 4779999999999999998765 57875 4443232112211 22 36677777777 8899988754
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCC--------------------------C-----------------cCCCCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E-----------------KDGKKF 122 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------------------~-----------------~~~~~~ 122 (287)
. ++..+++.+.++|+++|++|.-... . ..++.|
T Consensus 96 ~----~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgG 171 (246)
T 3inp_A 96 K----PVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGG 171 (246)
T ss_dssp S----SCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--
T ss_pred C----CHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCC
Confidence 2 3344677788999999999852110 0 001111
Q ss_pred ----cccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 123 ----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 123 ----~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
+..++.++++++. .+++|.+.|||+ ++.+.++.+ .|||.+.+|++++..++.
T Consensus 172 Q~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~-aGAD~~V~GSaIf~a~dp 232 (246)
T 3inp_A 172 QKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAV-CGVNAFVAGSAIFNSDSY 232 (246)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHT-TTCCEEEESHHHHTSSCH
T ss_pred cccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHH-cCCCEEEEehHHhCCCCH
Confidence 2345667777654 358999999997 688988887 699999999998876553
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=74.79 Aligned_cols=78 Identities=17% Similarity=0.329 Sum_probs=60.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+..+.+.|+++|.+++...........+.+|+.++++++..++||++.|||+ ++++.++++ .|+|+|++|++++..|+
T Consensus 121 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i~~~~d 198 (215)
T 1xi3_A 121 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLK-TGVDGIAVISAVMGAED 198 (215)
T ss_dssp HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHT-TTCSEEEESHHHHTSSS
T ss_pred HHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHH-cCCCEEEEhHHHhCCCC
Confidence 3456778999999876432211111124689999999988899999999999 999999887 69999999999998765
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-05 Score=73.52 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
..|+...+...+|+.+.+.++ .++.||..|.+..|.. +++.-.+.++++++.+ +.++.+..+-
T Consensus 132 ~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~ 196 (365)
T 3ik4_A 132 QLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV---------------DVAYDLARLRAIHQAAPTAPLIVDGNC 196 (365)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS---------------CHHHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred ceeeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 345556777889999988776 5678999999987632 3566677788888766 5778888888
Q ss_pred CCChhhHHHHHHHH--HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~~~~~~~~a~~l--~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+|+..++.++++.+ ++.++.+|- +.- .+.|++.++++++.+++||.+...+.++.++.++++...+|.
T Consensus 197 ~~~~~~A~~~~~~L~~~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~ 266 (365)
T 3ik4_A 197 GYDVERALAFCAACKAESIPMVLFE-------QPL---PREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASV 266 (365)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEEEEE-------CCS---CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTCCSE
T ss_pred CCCHHHHHHHHHHHhhCCCCceEEE-------CCC---CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCE
Confidence 99999999999999 666665552 211 135789999999999999999999999999999998888999
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
|++-
T Consensus 267 v~ik 270 (365)
T 3ik4_A 267 INIK 270 (365)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9873
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=76.25 Aligned_cols=127 Identities=8% Similarity=0.043 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
|.+|+++++.|+ .++.||..+.++.|+ +++.-.+.++++++.+ ++++.+..+-+|+..+++
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~ 262 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAV 262 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 568999998877 567899999999764 3555567788888876 688999999999999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
++++.+++.++.+| ++.- .+.|++.++++++. +++||.+.-.+.+..++.++++...+|.|++--+
T Consensus 263 ~~~~~L~~~~~~~i-------EeP~---~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d~~ 331 (441)
T 4a35_A 263 EWMSKLAKFKPLWI-------EEPT---SPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQIDSC 331 (441)
T ss_dssp HHHHHHGGGCCSEE-------ECCS---CTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred HHHHhhcccCccEE-------eCCC---CcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEECcc
Confidence 99999999998887 2211 13578888889886 7899999999999999999999888999987433
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=69.52 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=93.4
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 9 RPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.++...-.| .++++...++++..+ |-+.|.|-.- .+. -.++.|+....+-.+.+.+. ++.|.-.+
T Consensus 64 ~~~lpntaG~~taeeAv~~a~lare~~gt~~iKlEvi-------~d~--~~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~-- 131 (268)
T 2htm_A 64 VRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVI-------PDP--TYLLPDPLETLKAAERLIEE-DFLVLPYM-- 131 (268)
T ss_dssp SEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCC-------SCT--TTTCCCHHHHHHHHHHHHHT-TCEECCEE--
T ss_pred hhccCcccCCCCHHHHHHHHHhhhHhcCcceeeeeec-------cCc--cccCcCHHHHHHHHHHHHHC-CCEEeecc--
Confidence 345555555 688888888886543 4566554321 111 12556666665555555332 32222111
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCC-CcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALR-IPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~-ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
. .+ ..+++++++.|++.|---+..-.. ..+-.+.+.++.+++ ..+ +|||+.|||.+++|+..+++ .|||+
T Consensus 132 ~---~D-~~~ak~l~~~G~~aVmPlg~pIGs---G~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~Ame-LGAdg 203 (268)
T 2htm_A 132 G---PD-LVLAKRLAALGTATVMPLAAPIGS---GWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVME-LGLDA 203 (268)
T ss_dssp C---SC-HHHHHHHHHHTCSCBEEBSSSTTT---CCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHH-TTCCE
T ss_pred C---CC-HHHHHHHHhcCCCEEEecCccCcC---CcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHH-cCCCE
Confidence 1 22 378999999999988432321111 112346778899998 678 99999999999999999999 69999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|++|+++..
T Consensus 204 VlVgSAI~~ 212 (268)
T 2htm_A 204 VLVNTAIAE 212 (268)
T ss_dssp EEESHHHHT
T ss_pred EEEChHHhC
Confidence 999999874
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.8e-05 Score=67.27 Aligned_cols=140 Identities=13% Similarity=0.123 Sum_probs=103.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|++-|=|.-++-+..+ ....|+|+|=|+..+ + +.+.+.++++..++ .+..+.|-+.
T Consensus 101 ~lPvLrKDfi~~~~qi~e---a~~~GAD~ilLi~a~--------------l-~~~~l~~l~~~a~~-lGl~~lvEv~--- 158 (251)
T 1i4n_A 101 CRPILAKDFYIDTVQVKL---ASSVGADAILIIARI--------------L-TAEQIKEIYEAAEE-LGMDSLVEVH--- 158 (251)
T ss_dssp CSCEEEECCCCSTHHHHH---HHHTTCSEEEEEGGG--------------S-CHHHHHHHHHHHHT-TTCEEEEEEC---
T ss_pred CCCEEEeeCCCCHHHHHH---HHHcCCCEEEEeccc--------------C-CHHHHHHHHHHHHH-cCCeEEEEeC---
Confidence 568888888877765444 345699999998531 1 23567777777665 4777777653
Q ss_pred ChhhHHHHHHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+.++ ++++.+. |++.|-++.|.... ...|++...++.+.+ ++++|+.|||+|++|+.++.+ . +|+|
T Consensus 159 ~~eE----~~~A~~l~g~~iIGinnr~l~t-----~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~-~-a~av 227 (251)
T 1i4n_A 159 SRED----LEKVFSVIRPKIIGINTRDLDT-----FEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRG-K-VNAV 227 (251)
T ss_dssp SHHH----HHHHHTTCCCSEEEEECBCTTT-----CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTT-T-CSEE
T ss_pred CHHH----HHHHHhcCCCCEEEEeCccccc-----CCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHH-h-CCEE
Confidence 2222 5666788 99999999886532 146788788887776 589999999999999999987 5 9999
Q ss_pred EEehhhhhCccchhch
Q 023070 165 LSAESLLENPALFAGF 180 (287)
Q Consensus 165 miGR~~l~nP~lf~~~ 180 (287)
.||.+++..++.-..+
T Consensus 228 LVG~aimr~~d~~~~~ 243 (251)
T 1i4n_A 228 LVGTSIMKAENPRRFL 243 (251)
T ss_dssp EECHHHHHCSSHHHHH
T ss_pred EEcHHHcCCcCHHHHH
Confidence 9999999887765544
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=69.83 Aligned_cols=128 Identities=17% Similarity=0.107 Sum_probs=83.3
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEEEecCC-CChhhHHHHHHHH
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRVF-PNLQDTIKYAKML 99 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~vKiR~g-~~~~~~~~~a~~l 99 (287)
.++-..++.|+|.||+.+. +|+... .+.+-+.++++.+ +.|+-+=+-.+ .+.++....++..
T Consensus 92 ~e~~~Av~~GAdEID~vin----------ig~~~~----~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria 157 (234)
T 1n7k_A 92 VEAQTVLEAGATELDVVPH----------LSLGPE----AVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSS 157 (234)
T ss_dssp HHHHHHHHHTCCEEEECCC----------GGGCHH----HHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecc----------chHHHH----HHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHH
Confidence 3344467789999998642 343222 4555555555544 35653322222 2456667788888
Q ss_pred HHcCCCEEEEe-ccCCCCcCCCCccccHHHHHH--HHhhCCCcEEEecCCCCHHHHHHHHHhcCcc--EEEEehhhhh
Q 023070 100 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKA--VKNALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 172 (287)
Q Consensus 100 ~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~--i~~~~~ipVi~nGgI~s~~da~~~l~~~gad--~VmiGR~~l~ 172 (287)
.++|+|+|-.. |.+. .+.+..+.++. +++.+++||-++|||++.+++.++++ .|++ |+..|+.++.
T Consensus 158 ~eaGADfVKTsTG~~~------~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i~-aGa~RiG~S~g~~I~~ 228 (234)
T 1n7k_A 158 RRAGADIVKTSTGVYT------KGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVG-AGADIIGTSSAVKVLE 228 (234)
T ss_dssp HHTTCSEEESCCSSSC------CCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHH-TTCSEEEETTHHHHHH
T ss_pred HHhCCCEEEeCCCCCC------CCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHH-cCccccchHHHHHHHH
Confidence 99999999543 2211 02355555555 66666699999999999999999997 6999 7766666554
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-05 Score=74.10 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHH
Q 023070 20 PEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 20 ~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a 96 (287)
|+++++.++ .++. ||..+.+..| .+++.-.+.++++++.+ ++++.+..+-+|+..+++.++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~ 232 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAG 232 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHH
Confidence 688888766 6677 9999999875 13555667788888776 678999998899999999999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+++.|+.+|- + |.+ |++.++++++.+++||.+...+.++.++.++++...+|.|++--+-.+...
T Consensus 233 ~~l~~~~i~~iE-------q----P~~-d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 299 (398)
T 4dye_A 233 IALEELDLEYLE-------D----PCV-GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIA 299 (398)
T ss_dssp HHHGGGCCSEEE-------C----CSS-HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred HHHhhcCCCEEc-------C----CCC-CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence 999999999883 2 123 889999999999999999999999999999999888999998665555444
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.3e-06 Score=69.22 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=84.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+-++-+|++++.+.+ .+.|+|+|.+|.+.+ ..+. ++++.+++. +..+.+-+....
T Consensus 61 ~~~~~v~l~v~d~~~~i~~~--~~~gad~v~vh~~~~--------------~~~~---~~~~~~~~~-g~~i~~~~~~~t 120 (220)
T 2fli_A 61 KLVFDCHLMVVDPERYVEAF--AQAGADIMTIHTEST--------------RHIH---GALQKIKAA-GMKAGVVINPGT 120 (220)
T ss_dssp CSEEEEEEESSSGGGGHHHH--HHHTCSEEEEEGGGC--------------SCHH---HHHHHHHHT-TSEEEEEECTTS
T ss_pred CCCEEEEEeecCHHHHHHHH--HHcCCCEEEEccCcc--------------ccHH---HHHHHHHHc-CCcEEEEEcCCC
Confidence 45788888888887654333 445899999985311 2333 344444432 455555543322
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCc-CCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
..+. ++.+ ..++++|.+-+...... ... .+..++.++.+++.. ++||++.|||+ ++++.++++ .|+
T Consensus 121 ~~e~----~~~~-~~~~d~vl~~~~~~g~~g~~~-~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~-~Ga 192 (220)
T 2fli_A 121 PATA----LEPL-LDLVDQVLIMTVNPGFGGQAF-IPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYE-AGA 192 (220)
T ss_dssp CGGG----GGGG-TTTCSEEEEESSCTTCSSCCC-CGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHH-HTC
T ss_pred CHHH----HHHH-HhhCCEEEEEEECCCCccccc-CHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHH-cCC
Confidence 2221 2222 24589885533221110 111 122235556665543 79999999998 799988777 599
Q ss_pred cEEEEehhhhhCccc
Q 023070 162 EGVLSAESLLENPAL 176 (287)
Q Consensus 162 d~VmiGR~~l~nP~l 176 (287)
|+|.+||+++..++.
T Consensus 193 d~vvvGsai~~~~d~ 207 (220)
T 2fli_A 193 NVFVAGSYLFKASDL 207 (220)
T ss_dssp CEEEESHHHHTSSCH
T ss_pred CEEEEChHHhCCCCH
Confidence 999999999986663
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=71.60 Aligned_cols=142 Identities=12% Similarity=0.226 Sum_probs=87.6
Q ss_pred CCCEEEEecCCCH---H-----HHHHHHHHHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCC
Q 023070 8 DRPLFVQFCANDP---E-----ILLNAARRVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 77 (287)
Q Consensus 8 ~~p~~~Qi~g~~~---~-----~~~~aA~~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 77 (287)
+.|+|+.+.++.. + .+..+...++.|+|+|++. .|.+.. . ...+.+.++++...+ .++
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~~-------~----~~l~~i~~v~~~a~~-~Gl 172 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYE-------H----QSIKNIIQLVDAGMK-VGM 172 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTTH-------H----HHHHHHHHHHHHHHT-TTC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCcH-------H----HHHHHHHHHHHHHHH-cCC
Confidence 6789998877652 1 1123334567899998876 331110 0 011223344444332 368
Q ss_pred cEEEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC-CHHHH
Q 023070 78 PVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-HMEDV 152 (287)
Q Consensus 78 pv~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-s~~da 152 (287)
|+.+=...| .+.+.....++...++|+|+|-+.. + . +.++++.+.+++||++.||+. +.+++
T Consensus 173 pvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~-t---------~---e~~~~vv~~~~vPVv~~GG~~~~~~~~ 239 (295)
T 3glc_A 173 PTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYY-V---------E---KGFERIVAGCPVPIVIAGGKKLPEREA 239 (295)
T ss_dssp CEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEEC-C---------T---TTHHHHHHTCSSCEEEECCSCCCHHHH
T ss_pred EEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCC-C---------H---HHHHHHHHhCCCcEEEEECCCCCHHHH
Confidence 887743222 2322234577888899999987751 1 0 225777778899999999998 44444
Q ss_pred ----HHHHHhcCccEEEEehhhhhCcc
Q 023070 153 ----QKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 153 ----~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..+++ .|++|+.+||.++..|+
T Consensus 240 l~~v~~ai~-aGA~Gv~vGRnI~q~~d 265 (295)
T 3glc_A 240 LEMCWQAID-QGASGVDMGRNIFQSDH 265 (295)
T ss_dssp HHHHHHHHH-TTCSEEEESHHHHTSSS
T ss_pred HHHHHHHHH-hCCeEEEeHHHHhcCcC
Confidence 44456 59999999999997654
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.7e-06 Score=73.51 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=60.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++...+.|+|+|.+.+...........+..++.++++++. .++||++-||| +++++.++++ .|+|+|.+|++++..
T Consensus 148 a~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~-aGa~gvav~sai~~a 225 (243)
T 3o63_A 148 VAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLD-AGARRIVVVRAITSA 225 (243)
T ss_dssp HHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHH-TTCCCEEESHHHHTC
T ss_pred HHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHH-cCCCEEEEeHHHhCC
Confidence 4556679999999976533221111124678999999876 58999999999 8999999998 699999999999976
Q ss_pred ccchh
Q 023070 174 PALFA 178 (287)
Q Consensus 174 P~lf~ 178 (287)
++...
T Consensus 226 ~dp~~ 230 (243)
T 3o63_A 226 DDPRA 230 (243)
T ss_dssp SSHHH
T ss_pred CCHHH
Confidence 66433
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.6e-05 Score=73.21 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=97.0
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccc-cCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFL-MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l-~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~ 104 (287)
+.++.||..+.++ |...... +-|... ..+++...+.+++||+.+ ++++.+...-+|+.++++++++.+++.|+
T Consensus 166 ~~~~~G~~~~K~~---~~~~~~~-K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i 241 (410)
T 3dip_A 166 SLVAEGYAAMKIW---PFDDFAS-ITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGV 241 (410)
T ss_dssp HHHHTTCSEEEEC---TTHHHHT-TCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTC
T ss_pred HHHHcCCCEEEEC---CccCccc-cccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 3567899999997 2211110 112211 123556778899999887 58999999889999999999999999999
Q ss_pred CEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 105 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 105 ~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|- +... .+.+++..+++++.+++||.+.+.+.+++++.++++...+|.|++-
T Consensus 242 ~~iE-------qP~~--~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 242 LWVE-------DPIA--KMDNIPAVADLRRQTRAPICGGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp SEEE-------CCBS--CTTCHHHHHHHHHHHCCCEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CEEE-------CCCC--CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 9884 1100 1347888999999999999999999999999999998789999883
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-05 Score=65.16 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=47.4
Q ss_pred cccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 123 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 123 ~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
..|++...++...+ ++.+|+.+||.|++|+.++.+ .|+|+|.||.++|.+|+-.+
T Consensus 188 ~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~-~G~~a~LVGealmr~~d~~~ 244 (258)
T 4a29_A 188 EINKENQRKLISMIPSNVVKVAKLGISERNEIEELRK-LGVNAFLISSSLMRNPEKIK 244 (258)
T ss_dssp CBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHH-TTCCEEEECHHHHHCTTHHH
T ss_pred ccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCcHHH
Confidence 57888888888775 588899999999999998887 69999999999999987444
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=71.33 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=58.4
Q ss_pred HHHHHHcCCCEEEEeccCCCC-cCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~-~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++.+.+.|+|++.+....... ..+...+.+|+.++++++.++ +||++.|||. ++++.++++ .|+|+|.+|++++..
T Consensus 129 ~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 129 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQ-AGADGVSMISAISQA 206 (227)
T ss_dssp HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHH-TTCSEEEESHHHHTS
T ss_pred HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHH-cCCCEEEEhHHhhcC
Confidence 455668899999873221111 111012457999999998887 9999999998 999999887 699999999999875
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
++
T Consensus 207 ~d 208 (227)
T 2tps_A 207 ED 208 (227)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-05 Score=66.19 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe--cCC-CChhhHHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI--RVF-PNLQDTIKYAKM 98 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi--R~g-~~~~~~~~~a~~ 98 (287)
...++.. ++.|+|.||+-+ ++|.....+.+.+.+-+.++++.++- ..+|+ -.+ .+.++....++.
T Consensus 69 k~~E~~~-i~~GAdEID~Vi----------nig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~i 136 (226)
T 1vcv_A 69 RIALVSR-LAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDI 136 (226)
T ss_dssp HHHHHHH-HTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCEEEEec----------chhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHH
Confidence 3455556 888999999875 24555556788888888888887742 24553 222 345667788888
Q ss_pred HHHcCCCEEEEe-ccCC---CCcCCCCccccHHHHHHHHhh---C--CCcEEEecCCCCHHHHHHHHHh--cCcc
Q 023070 99 LEDAGCSLLAVH-GRTR---DEKDGKKFRADWNAIKAVKNA---L--RIPVLANGNVRHMEDVQKCLEE--TGCE 162 (287)
Q Consensus 99 l~~~G~~~I~vh-~rt~---~~~~~~~~~~~~~~i~~i~~~---~--~ipVi~nGgI~s~~da~~~l~~--~gad 162 (287)
..++|+|+|-.+ |-+. ......++.+..+.++.+++. + ++||-++|||+|.+++.++++. .|++
T Consensus 137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 999999999553 3320 000011123444444444443 4 4999999999999999999983 1565
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=69.40 Aligned_cols=70 Identities=7% Similarity=0.086 Sum_probs=58.5
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.|..+|.+-. +.. +.+.+.++++++.+ ++||++.|||+|++++.++.+ |||+|.+|.++..||..+.++
T Consensus 158 ~g~~~vY~e~-sG~-------~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~--gAD~VVVGSai~~~~~~~~e~ 227 (235)
T 3w01_A 158 YRLPVMYIEY-SGI-------YGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA--IADTIIVGDIIYKDIKKALKT 227 (235)
T ss_dssp TCCSEEEEEC-TTS-------CCCHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT--TSSEEEECTHHHHCHHHHHHT
T ss_pred cCCCEEEEec-CCC-------cCCHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc--CCCEEEECCceecCHHHHHHH
Confidence 4778887654 211 13689999999998 899999999999999998775 899999999999999988876
Q ss_pred h
Q 023070 181 R 181 (287)
Q Consensus 181 ~ 181 (287)
-
T Consensus 228 v 228 (235)
T 3w01_A 228 V 228 (235)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=73.58 Aligned_cols=127 Identities=13% Similarity=0.012 Sum_probs=97.4
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
+.++.||..+.+..|-|...... .|..-..+++...+.+++|++.+ ++++.+...-+|+.++++++++.+++.|+.
T Consensus 162 ~~~~~G~~~~Kik~g~~~~~~~~--~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~ 239 (400)
T 4dxk_A 162 SLLEDGITAMKIWPFDAAAEKTR--GQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTF 239 (400)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCS
T ss_pred HHHHhCCCEEEEcCCCccccccc--cCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 45678999999986633210000 11100123566788899999887 589999998899999999999999999999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+|. +.- .+.+++..+++++.+++||.+.+.+.+++++.++++...+|.|++
T Consensus 240 ~iE-------eP~---~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~ 290 (400)
T 4dxk_A 240 WHE-------DPI---KMDSLSSLTRYAAVSPAPISASETLGSRWAFRDLLETGAAGVVML 290 (400)
T ss_dssp EEE-------CCB---CTTSGGGHHHHHHHCSSCEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred EEE-------cCC---CcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 885 111 124677789999999999999999999999999999877999987
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.07 E-value=8.1e-06 Score=79.52 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 158 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~-----------~da~~~l~~ 158 (287)
.+..++|+.+.+.|++.|++..-+...........+.+.++++++.+.+||++.|||++. +++.++++
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~- 358 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR- 358 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH-
Confidence 478899999999999999886544321100001245788999999899999999999998 55999998
Q ss_pred cCccEEEEehhhhh-------------Cccchhchhh
Q 023070 159 TGCEGVLSAESLLE-------------NPALFAGFRT 182 (287)
Q Consensus 159 ~gad~VmiGR~~l~-------------nP~lf~~~~~ 182 (287)
.|||.|.||++++. +|.+++++..
T Consensus 359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~ 395 (555)
T 1jvn_A 359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISK 395 (555)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHH
T ss_pred cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHH
Confidence 59999999999987 4788888754
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-06 Score=71.19 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=58.5
Q ss_pred HHHHHHHHcCC-----CEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGC-----SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~-----~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.++.+.+.|. .+|.+-+ +.. ..+.+.++++++.+ ++||++.|||+|++++.++++ |||+|.+|
T Consensus 149 e~~~~~a~~g~~~l~~~~Vyl~~-~G~-------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~--gAd~VIVG 218 (234)
T 2f6u_A 149 ELAASYALVGEKLFNLPIIYIEY-SGT-------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVG 218 (234)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TTS-------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEEC
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CCC-------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh--CCCEEEEC
Confidence 34555655555 6666554 211 35789999999999 999999999999999999887 79999999
Q ss_pred hhhhhCccc
Q 023070 168 ESLLENPAL 176 (287)
Q Consensus 168 R~~l~nP~l 176 (287)
+++..+|.-
T Consensus 219 Sa~v~~~~~ 227 (234)
T 2f6u_A 219 NVIYEKGID 227 (234)
T ss_dssp HHHHHHCHH
T ss_pred hHHHhCHHH
Confidence 999999863
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.5e-06 Score=73.09 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.+++-.-+. .+.+.++++.+.+++||...|||++. ++.+++ .|||-|.+|..
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~---------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l--~Ga~~Viigs~ 105 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP---------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL--KWASKVIVTSW 105 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS---------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT--TTCSCEEECGG
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC---------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh--cCCCEEEECcH
Confidence 5788999999999999998853332 46788999999999999999999987 999999 59999999999
Q ss_pred hhhC-----ccchhchhh
Q 023070 170 LLEN-----PALFAGFRT 182 (287)
Q Consensus 170 ~l~n-----P~lf~~~~~ 182 (287)
++.| |.++.++-.
T Consensus 106 a~~~~g~~~p~~~~~~~~ 123 (260)
T 2agk_A 106 LFTKEGHFQLKRLERLTE 123 (260)
T ss_dssp GBCTTCCBCHHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHHH
Confidence 9999 998887753
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.8e-05 Score=73.55 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
.++..+++.++|.+-+.- .|+ ....+.+.++.+++..++||.+|-=. + .+-++.+. |
T Consensus 231 ~~a~~l~~~gvd~lvvdt-----------a~G----~~~~~L~~I~~l~~~~~vpvi~k~v~--~----~~~a~~l~--G 287 (486)
T 2cu0_A 231 KRAIELDKAGVDVIVVDT-----------AHA----HNLKAIKSMKEMRQKVDADFIVGNIA--N----PKAVDDLT--F 287 (486)
T ss_dssp HHHHHHHHTTCSEEEEEC-----------SCC----CCHHHHHHHHHHHHTCCSEEEEEEEC--C----HHHHTTCT--T
T ss_pred HHHHHHHHhcCCceEEEe-----------cCC----cEeehhhHHHHHHHHhCCccccCCcC--C----HHHHHHhh--C
Confidence 333345667888775541 111 22334555677777778999888311 1 23344455 9
Q ss_pred CCEEEEeccCCCCc------C--CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 104 CSLLAVHGRTRDEK------D--GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 104 ~~~I~vh~rt~~~~------~--~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.|.| |...... . +.+....+..+.++.+..++|||+.|||.+..|+.++|. .|||+||+|+.++.
T Consensus 288 ~d~v~v-g~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kala-lGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 288 ADAVKV-GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIA-AGADAVMLGNLLAG 362 (486)
T ss_dssp SSEEEE-CSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred CCeEEE-eeeeccceeeeEEeecCcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHH-cCCCceeeChhhhc
Confidence 999998 3211100 0 110012233445555556899999999999999999998 69999999999985
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.98 E-value=6.6e-05 Score=64.84 Aligned_cols=138 Identities=8% Similarity=0.127 Sum_probs=94.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHH---HHhhccCCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE---KLALNLNVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~---~v~~~~~~pv~vKiR 84 (287)
+.|+.+.+.-+||+.|.+.. ++ +|.|-+|..... .+ +.+.++ .+++ .+.-+.+-+.
T Consensus 64 ~~~~dvhLmv~dp~~~i~~~--~~--Ad~itvH~ea~~-------------~~---~~~~i~~~~~i~~-~G~k~gvaln 122 (227)
T 1tqx_A 64 SIFFDVHLMVEYPEKYVPLL--KT--SNQLTFHFEALN-------------ED---TERCIQLAKEIRD-NNLWCGISIK 122 (227)
T ss_dssp SCEEEEEEESSCGGGGGGGC--TT--SSEEEEEGGGGT-------------TC---HHHHHHHHHHHHT-TTCEEEEEEC
T ss_pred CCcEEEEEEEcCHHHHHHHH--Hh--CCEEEEeecCCc-------------cC---HHHHHHHHHHHHH-cCCeEEEEeC
Confidence 57899999999999775332 22 899999954210 02 334555 6654 3555555554
Q ss_pred CCCChhhHHHHHHHHHHcC-CCEEEEec---cCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhc
Q 023070 85 VFPNLQDTIKYAKMLEDAG-CSLLAVHG---RTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G-~~~I~vh~---rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.... .+.++.+.+.| +|+|.+.+ ....|.. .+..++.++++++.. +++|.+.|||+ ++.+.++.+ .
T Consensus 123 p~tp----~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f---~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~~-a 193 (227)
T 1tqx_A 123 PKTD----VQKLVPILDTNLINTVLVMTVEPGFGGQSF---MHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISAS-H 193 (227)
T ss_dssp TTSC----GGGGHHHHTTTCCSEEEEESSCTTCSSCCC---CGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHHH-H
T ss_pred CCCc----HHHHHHHhhcCCcCEEEEeeeccCCCCccc---chHHHHHHHHHHHhccCCeEEEECCCC-HHHHHHHHH-c
Confidence 4333 33445556666 99996544 3333321 245678888888876 78999999996 789999988 5
Q ss_pred CccEEEEehhhhhCcc
Q 023070 160 GCEGVLSAESLLENPA 175 (287)
Q Consensus 160 gad~VmiGR~~l~nP~ 175 (287)
|||.+.+|++++..++
T Consensus 194 GAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 194 GANIIVAGTSIFNAED 209 (227)
T ss_dssp TCCEEEESHHHHTCSS
T ss_pred CCCEEEEeHHHhCCCC
Confidence 9999999999997665
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=97.98 E-value=9.9e-05 Score=68.33 Aligned_cols=133 Identities=6% Similarity=0.088 Sum_probs=103.5
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC---CcEEEEec
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN---VPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~---~pv~vKiR 84 (287)
.|+-..+.+.+|+.+.+.++ .++.||..+.+..|. .+++...+.++++++.++ +.+.+..+
T Consensus 152 vp~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN 216 (377)
T 2pge_A 152 IPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDAN 216 (377)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEECT
T ss_pred EEEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 45555677788998887666 567899999998652 246666778888887664 77888888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHH--HHHHHHhcCcc
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED--VQKCLEETGCE 162 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d--a~~~l~~~gad 162 (287)
-+|+.++++++++.+++.++.+| ++.- .+.||+.++++++.+++||.+.-.+.+..+ +.++++...+|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~i-------EqP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d 286 (377)
T 2pge_A 217 GAFSPANAPQRLKRLSQFHLHSI-------EQPI---RQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQ 286 (377)
T ss_dssp TBBCTTTHHHHHHHHHTTCCSEE-------ECCB---CSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE-------EccC---CcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhCCCC
Confidence 88999999999999999988776 2211 135899999999999999999998988888 77888877899
Q ss_pred EEEE
Q 023070 163 GVLS 166 (287)
Q Consensus 163 ~Vmi 166 (287)
.|++
T Consensus 287 ~i~i 290 (377)
T 2pge_A 287 YIIL 290 (377)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4e-05 Score=66.40 Aligned_cols=139 Identities=9% Similarity=0.145 Sum_probs=92.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+-+-+...||+.|.+.+ ++.|+|+|-+|.-.| . .+ +.++++.+++ .+..+.+-+..+.
T Consensus 57 ~~~~dvhLmv~dp~~~i~~~--~~aGAd~itvh~Ea~-----------~--~~---~~~~i~~i~~-~G~k~gv~lnp~t 117 (231)
T 3ctl_A 57 TKPLDCHLMVTRPQDYIAQL--ARAGADFITLHPETI-----------N--GQ---AFRLIDEIRR-HDMKVGLILNPET 117 (231)
T ss_dssp CSCEEEEEESSCGGGTHHHH--HHHTCSEEEECGGGC-----------T--TT---HHHHHHHHHH-TTCEEEEEECTTC
T ss_pred CCcEEEEEEecCHHHHHHHH--HHcCCCEEEECcccC-----------C--cc---HHHHHHHHHH-cCCeEEEEEECCC
Confidence 67999999999999876444 566999999994321 0 12 3456666654 3555555555544
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
..+.. +.+.+ ++|.|.+.+. +..|.. .+..++.++++++.. +++|.+.|||+ ++.+.++.+ .
T Consensus 118 p~~~~----~~~l~-~~D~VlvmsV~pGfggQ~f---~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~-a 187 (231)
T 3ctl_A 118 PVEAM----KYYIH-KADKITVMTVDPGFAGQPF---IPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMA-A 187 (231)
T ss_dssp CGGGG----TTTGG-GCSEEEEESSCTTCSSCCC---CTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHH-H
T ss_pred cHHHH----HHHHh-cCCEEEEeeeccCcCCccc---cHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHH-c
Confidence 33322 22222 6999976433 333321 244566677776653 68999999997 588888888 5
Q ss_pred CccEEEEe-hhhhhCcc
Q 023070 160 GCEGVLSA-ESLLENPA 175 (287)
Q Consensus 160 gad~VmiG-R~~l~nP~ 175 (287)
|||.+.+| ++++..++
T Consensus 188 GAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 188 GADVFIVGTSGLFNHAE 204 (231)
T ss_dssp TCCEEEECTTTTGGGCS
T ss_pred CCCEEEEccHHHhCCCC
Confidence 99999999 99887544
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=4.2e-05 Score=67.26 Aligned_cols=129 Identities=19% Similarity=0.169 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecC--C-CChhh-HHHHHHH
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV--F-PNLQD-TIKYAKM 98 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~--g-~~~~~-~~~~a~~ 98 (287)
.++...++.|+|.||+-+. +|..+..+.+.+.+-+.++++.++ .+..+|+=+ + .+.++ ....++.
T Consensus 89 ~E~~~Av~~GAdEIDmVin----------ig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~i 158 (260)
T 1p1x_A 89 AETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEI 158 (260)
T ss_dssp HHHHHHHHHTCSEEEEECC----------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecc----------HHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHH
Confidence 3444467789999998752 455555677888888888887763 123445433 1 12234 4577888
Q ss_pred HHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhh-------CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 99 LEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA-------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 99 l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~-------~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
..++|+|+|-.+ |-+ ++.+..+.++.+++. .+++|-++|||+|.+++.++++. |.-.
T Consensus 159 a~eaGADfVKTSTGf~-------~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~a--------ga~~ 223 (260)
T 1p1x_A 159 SIKAGADFIKTSTGKV-------AVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI--------ADEL 223 (260)
T ss_dssp HHHTTCSEEECCCSCS-------SCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHH--------HHHH
T ss_pred HHHhCCCEEEeCCCCC-------CCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHh--------hhhh
Confidence 899999999543 222 124566655444443 36999999999999999999984 3345
Q ss_pred hhCccch
Q 023070 171 LENPALF 177 (287)
Q Consensus 171 l~nP~lf 177 (287)
++..|+=
T Consensus 224 lG~~w~~ 230 (260)
T 1p1x_A 224 FGADWAD 230 (260)
T ss_dssp HCTTSCS
T ss_pred ccccccc
Confidence 5555543
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00035 Score=66.09 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=104.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.-+=|.-++-+..+ ....|+|+|=|+..+ + +.+.+.++++..++ .+..+.+-+..
T Consensus 108 ~lPvLrKDFI~d~~Qi~e---a~~~GAD~ILLi~a~--------------l-~~~~l~~l~~~a~~-lgm~~LvEvh~-- 166 (452)
T 1pii_A 108 PQPILCKDFIIDPYQIYL---ARYYQADACLLMLSV--------------L-DDDQYRQLAAVAHS-LEMGVLTEVSN-- 166 (452)
T ss_dssp CSCEEEESCCCSHHHHHH---HHHTTCSEEEEETTT--------------C-CHHHHHHHHHHHHH-TTCEEEEEECS--
T ss_pred CCCeEEEeccCCHHHHHH---HHHcCCCEEEEEccc--------------C-CHHHHHHHHHHHHH-cCCeEEEEeCC--
Confidence 467777777777765444 345699999998542 1 24567777777665 47777776532
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.+-++++.++|++.|-+..|.... ...|++...++.+.+ +++||+.|||+|++|+.++.+ . +|+|.
T Consensus 167 -----~eE~~~A~~lga~iIGinnr~L~t-----~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~-~-a~avL 234 (452)
T 1pii_A 167 -----EEEQERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH-F-ANGFL 234 (452)
T ss_dssp -----HHHHHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTT-T-CSEEE
T ss_pred -----HHHHHHHHHCCCCEEEEeCCCCCC-----CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHH-h-CCEEE
Confidence 223456678999999999886532 257888888887765 689999999999999999987 5 99999
Q ss_pred EehhhhhCccchhchh
Q 023070 166 SAESLLENPALFAGFR 181 (287)
Q Consensus 166 iGR~~l~nP~lf~~~~ 181 (287)
||.+++..++.-..++
T Consensus 235 VGealmr~~d~~~~~~ 250 (452)
T 1pii_A 235 IGSALMAHDDLHAAVR 250 (452)
T ss_dssp ECHHHHTCSCHHHHHH
T ss_pred EcHHHcCCcCHHHHHH
Confidence 9999999888666554
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=9.1e-05 Score=65.73 Aligned_cols=120 Identities=11% Similarity=0.150 Sum_probs=77.9
Q ss_pred HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH---HHHHHHHHHhhccCCcEEEEecCC---CChhh-HHHHH
Q 023070 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP---LVKSLVEKLALNLNVPVSCKIRVF---PNLQD-TIKYA 96 (287)
Q Consensus 24 ~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~---~~~~iv~~v~~~~~~pv~vKiR~g---~~~~~-~~~~a 96 (287)
.++...++.|+|.||+-+. +|..+..+.+ .+.+-+.++++.++ ...+|+=+- .+.++ ....+
T Consensus 110 ~E~~~Av~~GAdEIDmVin----------ig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~ 178 (281)
T 2a4a_A 110 NDTEKALDDGADEIDLVIN----------YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTT 178 (281)
T ss_dssp HHHHHHHHHTCSEEEEECC----------HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEecc----------hHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHH
Confidence 4444467789999998752 4444445667 88888889988874 234454332 12233 45778
Q ss_pred HHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHh---------hCCCcEEEecCCCCHHHHHHHHHh
Q 023070 97 KMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKN---------ALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 97 ~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~---------~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+...++|+|+|-.. |-+.. .....+...++++.+ ..+++|-++|||+|.+++.++++.
T Consensus 179 ~ia~eaGADfVKTSTGf~~~----gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~a 246 (281)
T 2a4a_A 179 LAVLNGNADFIKTSTGKVQI----NATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILL 246 (281)
T ss_dssp HHHHTTTCSEEECCCSCSSC----CCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHH
T ss_pred HHHHHhCCCEEEeCCCCCCC----CCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHH
Confidence 88899999999543 32211 101234444554432 346999999999999999999984
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00018 Score=67.09 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=101.5
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|+...+...+|+.+++.++ .++.||..|.+..|.+.... .-...++.-.+.++++++.+ +..+.+..+-+
T Consensus 155 v~~~~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~-------~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~ 227 (393)
T 3u9i_A 155 LETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA-------TTIRTMEHDLARIVAIRDVAPTARLILDGNCG 227 (393)
T ss_dssp EECCEEEC---CHHHHHHHHHHHTTTCCEEEEECC--------------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSC
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc-------cccccHHHHHHHHHHHHHHCCCCeEEEEccCC
Confidence 34445667788999888776 56789999999987543110 00112455566777787766 56777887889
Q ss_pred CChhhHHHHHHHH--HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l--~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
|+..+++++++.+ ++.++.+| ++.- .+.|++.++++++.+++||.+.-.+.+..++.++++...+|.|
T Consensus 228 w~~~~A~~~~~~L~~~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i 297 (393)
T 3u9i_A 228 YTAPDALRLLDMLGVHGIVPALF-------EQPV---AKDDEEGLRRLTATRRVPVAADESVASATDAARLARNAAVDVL 297 (393)
T ss_dssp CCHHHHHHHHHTTTTTTCCCSEE-------ECCS---CTTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCHHHHHHHHHHHhhCCCCeEEE-------ECCC---CCCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcCCCCEE
Confidence 9999999999999 77777766 2211 1347788899999999999999999999999999998789998
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 298 ~~ 299 (393)
T 3u9i_A 298 NI 299 (393)
T ss_dssp EE
T ss_pred Ee
Confidence 87
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=67.71 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=98.5
Q ss_pred CCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 9 RPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
.|+-..++ +.+++++.+.++ .++.||..+.+..| | ..+ .+.++++++.+ ++.+.+..+-
T Consensus 150 v~~~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d----~~~v~avr~a~~~~~l~vDaN~ 211 (393)
T 1wuf_A 150 IKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-P-------------NKD----IQFVEAVRKSFPKLSLMADANS 211 (393)
T ss_dssp EEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-T-------------TBS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred ceeeEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-h-------------HHH----HHHHHHHHHHcCCCEEEEECCC
Confidence 34444454 346898887766 56679999999764 1 112 35567777766 5677788777
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+|+.+++ ++++.+++.++.+|- +.- .+.|++..+++++.+++||.+.-.+.++.++.++++...+|.|+
T Consensus 212 ~~~~~~a-~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ 280 (393)
T 1wuf_A 212 AYNREDF-LLLKELDQYDLEMIE-------QPF---GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAIN 280 (393)
T ss_dssp CCCGGGH-HHHHTTGGGTCSEEE-------CCS---CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHH-HHHHHHHhCCCeEEE-------CCC---CCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEE
Confidence 8998888 999999999988874 211 13578889999999999999999999999999999877789998
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 281 i 281 (393)
T 1wuf_A 281 L 281 (393)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.8e-05 Score=81.33 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHcCCCEE---EEeccCCCCcCCCC--ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-------
Q 023070 90 QDTIKYAKMLEDAGCSLL---AVHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE------- 157 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I---~vh~rt~~~~~~~~--~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~------- 157 (287)
...+..+...+++|+|++ .+.|....+..+.. ...-+..+.++++.++||||+.|||.+.+++..+|.
T Consensus 710 ~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~ 789 (2051)
T 2uv8_G 710 IDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKF 789 (2051)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHcccccccc
Confidence 556677788899999994 44455443321110 012234578899999999999999999999999993
Q ss_pred ---hcCccEEEEehhhhhCcc
Q 023070 158 ---ETGCEGVLSAESLLENPA 175 (287)
Q Consensus 158 ---~~gad~VmiGR~~l~nP~ 175 (287)
..|||||++|+.++.-..
T Consensus 790 g~~~lgadGv~~GTrf~~t~E 810 (2051)
T 2uv8_G 790 DYPPMPFDGFLFGSRVMIAKE 810 (2051)
T ss_dssp TCCCCCCSCEECSGGGTTSTT
T ss_pred CccCCCCceeeechHHHhCcc
Confidence 369999999999987554
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00016 Score=67.30 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=99.8
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|+...+...+|+.+++.++ .++.||..|.+..|.. +++.-.+.++++++.+ +..+.+..+-+
T Consensus 134 v~~~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~---------------~~~~d~~~v~avR~~~~~~~L~vDaN~~ 198 (389)
T 3s5s_A 134 LTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGR---------------LAASDPARIEAIHAAAPGASLILDGNGG 198 (389)
T ss_dssp EECCEEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG---------------GTTTHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred eEEEeeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 34445677788999888776 5667999999987521 1233345566666655 56777887789
Q ss_pred CChhhHHHHHHHH--HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l--~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
|+..++.++++.+ ++.++.+| ++.- .+.|++.++++++.+++||.+.-.+.+..++.++++...+|.|
T Consensus 199 w~~~~A~~~~~~L~~~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v 268 (389)
T 3s5s_A 199 LTAGEALALVAHARRLGADVALL-------EQPV---PRDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAERAATVV 268 (389)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE-------ECCS---CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTTCCSEE
T ss_pred CCHHHHHHHHHHHhhCCCCeEEE-------ECCC---CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEE
Confidence 9999999999999 54444444 2211 1357899999999999999999999999999999998789999
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 269 ~~ 270 (389)
T 3s5s_A 269 NI 270 (389)
T ss_dssp EE
T ss_pred Ee
Confidence 87
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00019 Score=61.85 Aligned_cols=149 Identities=13% Similarity=0.223 Sum_probs=95.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChh--hhh--cC-------cccccccCChHHHH----------
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQR--IAR--RG-------NYGAFLMDNLPLVK---------- 65 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~--~~~--~~-------~~G~~l~~~~~~~~---------- 65 (287)
+.|++.=|.+.+++++.+.++ +++.|++.|++-+-.|.. ..+ +. ++|. ++ +.+.+.
T Consensus 16 ~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl-~~d~~~~A~~aGAd~v 93 (224)
T 1vhc_A 16 ELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VL-TAEQVVLAKSSGADFV 93 (224)
T ss_dssp HHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CC-SHHHHHHHHHHTCSEE
T ss_pred HCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-Ee-eHHHHHHHHHCCCCEE
Confidence 357888888999999988888 456789999998654431 111 11 2233 22 333332
Q ss_pred -------HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-C
Q 023070 66 -------SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 137 (287)
Q Consensus 66 -------~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ 137 (287)
++++..++ .+.++.+-+ .+..+ +..+.+.|+|+|-+++ .. . ..-.++++.++..+ +
T Consensus 94 ~~p~~d~~v~~~ar~-~g~~~i~Gv------~t~~e-~~~A~~~Gad~vk~Fp---a~---~--~gG~~~lk~l~~~~~~ 157 (224)
T 1vhc_A 94 VTPGLNPKIVKLCQD-LNFPITPGV------NNPMA-IEIALEMGISAVKFFP---AE---A--SGGVKMIKALLGPYAQ 157 (224)
T ss_dssp ECSSCCHHHHHHHHH-TTCCEECEE------CSHHH-HHHHHHTTCCEEEETT---TT---T--TTHHHHHHHHHTTTTT
T ss_pred EECCCCHHHHHHHHH-hCCCEEecc------CCHHH-HHHHHHCCCCEEEEee---Cc---c--ccCHHHHHHHHhhCCC
Confidence 22333332 344443321 11222 4556689999999864 11 0 01257889999887 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
+||++.||| +++.+.++++..|+++|. |+++...+.+
T Consensus 158 ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~~~~~i 194 (224)
T 1vhc_A 158 LQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFVEKKLI 194 (224)
T ss_dssp CEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGCHHHH
T ss_pred CeEEEECCc-CHHHHHHHHhcCCCEEEE-EchhcCcchh
Confidence 999999999 568999999855999999 9888766554
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=9.9e-05 Score=65.50 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCccccccc---CChHHHHHHHHHHhhccCCcEEEEecC--C-CChhh-HHHH
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD-TIKY 95 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~-~~~~ 95 (287)
..++...++.|+|.||+=+ ++|..+. .+.+.+.+-++++++.++ +..+|+=+ + .+.++ ....
T Consensus 103 ~~Ea~~Av~~GAdEIDmVi----------nig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A 171 (297)
T 4eiv_A 103 SLEAVGALKDGADEIECLI----------DWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRA 171 (297)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeee----------eHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHH
Confidence 3345557788999999753 1455444 578888888888888874 34555533 3 22233 5677
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh------------------------CCCcEEEe-cCCCCHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA------------------------LRIPVLAN-GNVRHME 150 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~------------------------~~ipVi~n-GgI~s~~ 150 (287)
++.+.++|+|+|--+.... ++.+..+.++.+++. .++.|=++ |||+|.+
T Consensus 172 ~~ia~~AGADFVKTSTGf~------~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e 245 (297)
T 4eiv_A 172 AVAALEGGADFLQTSSGLG------ATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAE 245 (297)
T ss_dssp HHHHHHHTCSEEECCCSSS------SCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHH
T ss_pred HHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHH
Confidence 8888999999994432211 112444443333322 34778899 9999999
Q ss_pred HHHHHHHh
Q 023070 151 DVQKCLEE 158 (287)
Q Consensus 151 da~~~l~~ 158 (287)
++.++++.
T Consensus 246 ~A~~~i~~ 253 (297)
T 4eiv_A 246 TADFLMQM 253 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999984
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00063 Score=62.58 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=100.7
Q ss_pred EEEEec-CCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC
Q 023070 11 LFVQFC-ANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 86 (287)
Q Consensus 11 ~~~Qi~-g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g 86 (287)
+..-+. +..++.+.++++.+. .|+..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~~ 198 (370)
T 2chr_A 134 IAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQA 198 (370)
T ss_dssp BEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEECTTC
T ss_pred eeeeeccCchhhhHHHHHHHHhhcccceeeccccc---------------CChHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 333343 456677777777654 589999887652 23445556677888776 57788888889
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.+++.++++.+++.++.+| ++.- .+.|++.++++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 199 ~~~~~A~~~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~ 268 (370)
T 2chr_A 199 WDEQVASVYIPELEALGVELI-------EQPV---GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFSL 268 (370)
T ss_dssp CCTHHHHHHHHHHHTTTCCEE-------ECCS---CSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEECC
T ss_pred CCHHHHHHHHHHHHhcCCcee-------cCCC---ChhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHcCCCcEEEe
Confidence 999999999999999998876 2211 135789999999999999999999999999999998777888865
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=63.79 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=87.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--------CCcEEEEe
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--------NVPVSCKI 83 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--------~~pv~vKi 83 (287)
=+-+.-++|+.+.+.+ ++.|+|+|-+|.... +.+.+.++.+++.. +.-+.+-+
T Consensus 73 DvhLMv~~p~~~i~~~--~~aGAd~itvH~ea~-----------------~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l 133 (237)
T 3cu2_A 73 DVHLMVRNQLEVAKAV--VANGANLVTLQLEQY-----------------HDFALTIEWLAKQKTTYANQVYPVLIGACL 133 (237)
T ss_dssp EEEEECSCHHHHHHHH--HHTTCSEEEEETTCT-----------------TSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred CeEEEEECHHHHHHHH--HHcCCCEEEEecCCc-----------------ccHHHHHHHHHhcccccccccCCceEEEEE
Confidence 5677778998887766 467999999995421 11456667766541 33444444
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEE---eccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHH
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~v---h~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~ 155 (287)
......+. ++.+. .++|+|.+ ++.+..|.. .+..++.++++++.. ++||.+-|||+ .+.+.++
T Consensus 134 ~p~Tp~~~----l~~~l-~~~D~vlvMsv~pgfggq~f---~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~ 204 (237)
T 3cu2_A 134 CPETPISE----LEPYL-DQIDVIQLLTLDPRNGTKYP---SELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYF 204 (237)
T ss_dssp CTTSCGGG----GTTTT-TTCSEEEEESEETTTTEECC---HHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHH
T ss_pred eCCChHHH----HHHHh-hcCceeeeeeeccCcCCeec---ChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHH
Confidence 33333222 22222 36999855 666554322 234466677777664 58999999996 7888888
Q ss_pred HH--hcCccEEEEehhhhhC
Q 023070 156 LE--ETGCEGVLSAESLLEN 173 (287)
Q Consensus 156 l~--~~gad~VmiGR~~l~n 173 (287)
.+ . |||++.+|++++..
T Consensus 205 ~~~~a-Gad~~VvGSaIf~~ 223 (237)
T 3cu2_A 205 KQGTH-QIDWLVSGSALFSG 223 (237)
T ss_dssp HHSSS-CCCCEEECGGGGSS
T ss_pred HHhCC-CCcEEEEeeHHhCC
Confidence 76 5 99999999999874
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00057 Score=61.48 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----CC--Ch-hhHHHHHHH
Q 023070 29 RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-----FP--NL-QDTIKYAKM 98 (287)
Q Consensus 29 ~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-----g~--~~-~~~~~~a~~ 98 (287)
.++.|+|+|.+. ++...+ . ....+.+.++.+..+ ..++|+.+-+-. +. +. +...+.++.
T Consensus 117 a~~~GAdaV~vlv~~~~d~~---------~-~~~~~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~ 185 (304)
T 1to3_A 117 VKRDGAKALKLLVLWRSDED---------A-QQRLNMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKE 185 (304)
T ss_dssp HHHTTCCEEEEEEEECTTSC---------H-HHHHHHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEEcCCCcc---------H-HHHHHHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHHHHHH
Confidence 456699998854 331100 0 111233444444433 348888776532 21 12 334555888
Q ss_pred HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh----CCCc-EEEecCCCCHH----HHHHHHHhcCccEEEEehh
Q 023070 99 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIP-VLANGNVRHME----DVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ip-Vi~nGgI~s~~----da~~~l~~~gad~VmiGR~ 169 (287)
+.+.|+|++-++.-.. . ..+++.+.++.+. +++| |++.||+ +.+ .+..+++ .|++||.+||+
T Consensus 186 a~~lGaD~iKv~~~~~-~------~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~-aGa~Gv~vGRa 256 (304)
T 1to3_A 186 LGDSGADLYKVEMPLY-G------KGARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAME-AGASGFLAGRA 256 (304)
T ss_dssp HTTSSCSEEEECCGGG-G------CSCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHH-TTCCEEEESHH
T ss_pred HHHcCCCEEEeCCCcC-C------CCCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHH-cCCeEEEEehH
Confidence 8999999999985322 1 1256777776666 8999 9999999 553 3666666 59999999999
Q ss_pred hhhC
Q 023070 170 LLEN 173 (287)
Q Consensus 170 ~l~n 173 (287)
+...
T Consensus 257 I~q~ 260 (304)
T 1to3_A 257 VWSS 260 (304)
T ss_dssp HHGG
T ss_pred HhCc
Confidence 9876
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00051 Score=63.41 Aligned_cols=113 Identities=11% Similarity=0.099 Sum_probs=91.4
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
+....||..+.+..|- +++.-.+.++++++.+ ++.+.+...-+|+..+++++++.+++.++.
T Consensus 154 ~~~~~Gf~~~K~k~g~----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~ 217 (378)
T 4hpn_A 154 ERRAEGFHACKIKIGF----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGID 217 (378)
T ss_dssp HHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCCS
T ss_pred HHHHhccceecccccC----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcccc
Confidence 3556799999988652 3455567788888876 578888888899999999999999999987
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+| ++.- .+.|++.++++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 218 ~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 268 (378)
T 4hpn_A 218 WF-------EEPV---VPEQLDAYARVRAGQPIPVAGGETWHGRYGMWQALSAGAVDILQP 268 (378)
T ss_dssp CE-------ECCS---CTTCHHHHHHHHHHSSSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred hh-------hcCC---CccchhhhHHHHhhCCceeeCCcCccchHhHHHHHHcCCCCEEee
Confidence 76 2211 135789999999999999999999999999999999878888865
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.7e-05 Score=64.22 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=56.2
Q ss_pred HHHHHHcCCCEEEEeccCCCCc-CCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+..+. .|+|+|.+.+-..... .+...+.+|+.++.+++. .++||++.|||. ++++.++++ .|++||.++++++.
T Consensus 101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~-~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKD-FGFGGAVVLGDLWN 177 (210)
T ss_dssp HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHH-TTCSEEEESHHHHT
T ss_pred HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHH-hCCCEEEEhHHhHc
Confidence 44455 8999998865432221 111124688999999887 689999999997 899999998 79999999999986
Q ss_pred Cc
Q 023070 173 NP 174 (287)
Q Consensus 173 nP 174 (287)
.+
T Consensus 178 ~~ 179 (210)
T 3ceu_A 178 KF 179 (210)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00048 Score=64.53 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=96.1
Q ss_pred ecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhh
Q 023070 15 FCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQD 91 (287)
Q Consensus 15 i~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~ 91 (287)
+...+++.+++.++ ..+.||..+.+..|.. ++...+.++++++.+ ++.+.+...-+|+..+
T Consensus 184 ~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~----------------~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~ 247 (412)
T 4h1z_A 184 LPEDTRAKRAELAAAWQAKGFSSFKFASPVA----------------DDGVAKEMEILRERLGPAVRIACDMHWAHTASE 247 (412)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCCEEEEEGGGC----------------TTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHH
T ss_pred CCCCcHHHHHHHHHHHHhcCcceeccccccc----------------hhhHHHHHHHHHhccCCeEEEEeccccCCCHHH
Confidence 33457888888776 5667999999875421 122344466777765 5778888888999999
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++++.+++.|+.+| ++.-. +.|++.++++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 248 A~~~~~~l~~~~l~~i-------EqP~~---~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~ 312 (412)
T 4h1z_A 248 AVALIKAMEPHGLWFA-------EAPVR---TEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARRALAIVQP 312 (412)
T ss_dssp HHHHHHHHGGGCEEEE-------ECCSC---TTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHhhccccccee-------cCCCC---ccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcCCCCEEEe
Confidence 9999999999997665 22111 35789999999999999999999999999999999777787654
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00016 Score=61.79 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=78.9
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-Chhh
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 91 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~ 91 (287)
+-+. ..|+.+.+. .++.|+|+|-++... ..+.+.++++.+++. +..+.+.+ ++. +.
T Consensus 66 ~~l~-d~p~~~~~~--~~~aGad~i~vh~~~----------------~~~~~~~~~~~~~~~-g~~~~~d~-l~~~T~-- 122 (218)
T 3jr2_A 66 MKTT-DGGAILSRM--AFEAGADWITVSAAA----------------HIATIAACKKVADEL-NGEIQIEI-YGNWTM-- 122 (218)
T ss_dssp EEEC-SCHHHHHHH--HHHHTCSEEEEETTS----------------CHHHHHHHHHHHHHH-TCEEEEEC-CSSCCH--
T ss_pred Eeec-ccHHHHHHH--HHhcCCCEEEEecCC----------------CHHHHHHHHHHHHHh-CCccceee-eecCCH--
Confidence 3444 456654433 345688999888431 123456666666543 55444422 222 22
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+-++.+.+.|++++.++.....+..+. ..+..++.+++++. .++||++.||| +++.+.++++ .|||+|.+||++
T Consensus 123 --~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~-~~~pi~v~GGI-~~~~~~~~~~-aGAd~vvvGsaI 197 (218)
T 3jr2_A 123 --QDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSA-LGIELSITGGI-VPEDIYLFEG-IKTKTFIAGRAL 197 (218)
T ss_dssp --HHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTT-SCEEEEEESGGG
T ss_pred --HHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHhC-CCCCEEEECCC-CHHHHHHHHH-cCCCEEEEchhh
Confidence 224445667999987742211111011 01233444555543 58999999999 5899988887 699999999998
Q ss_pred hhCc
Q 023070 171 LENP 174 (287)
Q Consensus 171 l~nP 174 (287)
...+
T Consensus 198 ~~a~ 201 (218)
T 3jr2_A 198 AGAE 201 (218)
T ss_dssp SHHH
T ss_pred cCCC
Confidence 7543
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0012 Score=59.93 Aligned_cols=124 Identities=8% Similarity=0.060 Sum_probs=95.7
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+++.+.+.++ .++.||..+.|..|. .+++.-.+.++++++.+ ++.+.+...-+|+.+++++
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~ 179 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANR 179 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHH
Confidence 46777766555 667899999998652 23555567788888876 4778888788899999999
Q ss_pred HHHHHHHc---CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 95 YAKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 95 ~a~~l~~~---G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+++.+++. ++.+| ++.- .+.|++.++++++.+++||.+.=.+.+..++.++++...+|.+.+
T Consensus 180 ~~~~l~~~~~~~i~~i-------EqP~---~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~i 244 (332)
T 2ozt_A 180 WFAWLDRHGNGKIEYV-------EQPL---PPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVI 244 (332)
T ss_dssp HHHHHHHHCCTTEEEE-------ECCS---CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhhccCCccee-------ECCC---CCCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999998 65544 2211 135789999999999999999999999999999998756777666
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0012 Score=61.31 Aligned_cols=131 Identities=12% Similarity=0.215 Sum_probs=99.7
Q ss_pred CCCEEEEecCCC-HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRPLFVQFCAND-PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~-~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
..|+-..++..+ |+.+.+.++ .++.||..+.+..| | ..+. +.++++++.+ ++.+.+..+
T Consensus 137 ~v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~-------------~~d~----~~v~avR~~~~~~~l~vDaN 198 (388)
T 3qld_A 137 RVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P-------------GRDR----AAIKAVRLRYPDLAIAADAN 198 (388)
T ss_dssp EEEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T-------------TBSH----HHHHHHHHHCTTSEEEEECT
T ss_pred eEEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c-------------HHHH----HHHHHHHHHCCCCeEEEECC
Confidence 345666666665 999988776 56789999999875 1 1233 4556666654 577888888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++.. ++.+++.++.+| ++.- .+.|++..+++++.+++||.+.=.+.+..++.++++...+|.|
T Consensus 199 ~~~~~~~A~~-~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v 267 (388)
T 3qld_A 199 GSYRPEDAPV-LRQLDAYDLQFI-------EQPL---PEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLGAARVL 267 (388)
T ss_dssp TCCCGGGHHH-HHHGGGGCCSCE-------ECCS---CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCChHHHHH-HHHHhhCCCcEE-------ECCC---CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 8999888876 788998887766 2211 1357888999999999999999899999999999997779999
Q ss_pred EEe
Q 023070 165 LSA 167 (287)
Q Consensus 165 miG 167 (287)
++-
T Consensus 268 ~~k 270 (388)
T 3qld_A 268 NVK 270 (388)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00051 Score=65.02 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=98.2
Q ss_pred CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++++.|+ .+++ ||..+.|..|-. +++.-.+.++++++.+ ++++.+..+-+|+..++++
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~ 254 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF---------------PPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKW 254 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHH
Confidence 68999988877 4554 999999986521 3444456777887776 6788888888999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+++.+++. +.+| ++. ..+++.++++++.+++||.+.-.+.+..++.++++...+|.|++-
T Consensus 255 ~~~~L~~~-l~~i-------EeP-----~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d 314 (445)
T 3va8_A 255 VAKELEGI-VEYL-------EDP-----AGEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQDAVQVILSD 314 (445)
T ss_dssp HHHHTTTT-CSEE-------ESC-----BSHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHTTCCSEEEEC
T ss_pred HHHHHhhh-cCeE-------eec-----CcCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEec
Confidence 99999987 7666 221 137888999999999999998899999999999998789998874
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00054 Score=58.30 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=84.9
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhH
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDT 92 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~ 92 (287)
+-+. ..|+.+.+ ..++.|+|.|.+|... ..+.+.++++.+++ .+.++.+++-.+.+ ..
T Consensus 63 ~kl~-dip~t~~~--~~~~~Gad~itvh~~~----------------g~~~l~~~~~~~~~-~g~~~~~~ll~~~t-~~- 120 (216)
T 1q6o_A 63 AKIA-DAGKILSR--MCFEANADWVTVICCA----------------DINTAKGALDVAKE-FNGDVQIELTGYWT-WE- 120 (216)
T ss_dssp EEEC-SCHHHHHH--HHHHTTCSEEEEETTS----------------CHHHHHHHHHHHHH-TTCEEEEEECSCCC-HH-
T ss_pred EEec-ccHHHHHH--HHHhCCCCEEEEeccC----------------CHHHHHHHHHHHHH-cCCCceeeeeeCCC-hh-
Confidence 5554 46777766 3456799999999531 12335566666655 36777666531333 21
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
-++.+++.|.+.+.+|--......+..+ ..+.++.+++.. ++||++.|||+ ++.+.++++ .|+|++.+||++
T Consensus 121 --~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~~-aGad~ivvG~~I 194 (216)
T 1q6o_A 121 --QAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFKG-IPIHVFIAGRSI 194 (216)
T ss_dssp --HHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGTT-SCCSEEEESHHH
T ss_pred --hHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHHH-cCCCEEEEeehh
Confidence 2344556688777776321111112222 245566666654 68899999998 788888887 699999999999
Q ss_pred hhCcc
Q 023070 171 LENPA 175 (287)
Q Consensus 171 l~nP~ 175 (287)
+..++
T Consensus 195 ~~a~d 199 (216)
T 1q6o_A 195 RDAAS 199 (216)
T ss_dssp HTSSC
T ss_pred cCCCC
Confidence 87544
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00066 Score=64.24 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=99.8
Q ss_pred CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++++.|+ .++. ||..+.|..|-. +++.-.+.++++|+.+ ++++.+..+-+|+..+++.
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF---------------APEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 68999998877 4554 999999986521 3444456777887776 6788999888999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+++.+++. +.+| ++. . .+++.++++++.+++||.+.-.+.++.++.++++...+|.+++-=.-.
T Consensus 257 ~~~~L~~~-l~~i-------EeP----~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~ 320 (445)
T 3vdg_A 257 VAAGLEGV-LEYL-------EDP----T-PGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYW 320 (445)
T ss_dssp HHHHTTTT-CSEE-------ECC----S-SSHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHH
T ss_pred HHHHHhhH-HHee-------eCC----C-CCHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCccee
Confidence 99999987 7666 221 1 378889999999999999988999999999999988899998743333
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00065 Score=63.01 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=96.2
Q ss_pred CEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 10 PLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
|+-..++ +.+++++.+.++ .++.||..+.+..| | ..+. +.++++++.+ ++.+.+..+-+
T Consensus 151 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~----~~v~avr~a~~~~~l~vDaN~~ 212 (386)
T 1wue_A 151 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDV----EPVALIRQHFPNLPLMVDANSA 212 (386)
T ss_dssp ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSH----HHHHHHHHHCTTSCEEEECTTC
T ss_pred EeeEEecCCCCHHHHHHHHHHHHHhhhheEEEeeC-c-------------HHHH----HHHHHHHHhCCCCeEEEeCCCC
Confidence 4434443 346888887665 56789999999765 2 1233 4456666554 57788888888
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.+++ ++++.+++.++.+|- +.- .+.||+..+++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 213 ~~~~~a-~~~~~l~~~~i~~iE-------qP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~i 281 (386)
T 1wue_A 213 YTLADL-PQLQRLDHYQLAMIE-------QPF---AADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINL 281 (386)
T ss_dssp CCGGGH-HHHHGGGGSCCSCEE-------CCS---CTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHH-HHHHHHHhCCCeEEe-------CCC---CcccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEE
Confidence 998888 889999998887762 211 135788899999999999999989999999999998877999987
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00028 Score=60.30 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=96.1
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChh--hhh--cC-------cccccccCChHHHHHHHHHH----
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQR--IAR--RG-------NYGAFLMDNLPLVKSLVEKL---- 71 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~--~~~--~~-------~~G~~l~~~~~~~~~iv~~v---- 71 (287)
+.|++.=|-+.+++++.+.++ +++.|++.|++-+-.|.. ..+ +. ++|. ++ +.+.+...++.=
T Consensus 15 ~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi-~~d~~~~A~~aGAd~v 92 (214)
T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VL-NPQQLAEVTEAGAQFA 92 (214)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CC-SHHHHHHHHHHTCSCE
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EE-EHHHHHHHHHcCCCEE
Confidence 578999999999999988888 456789999998654431 111 11 2333 22 223333222211
Q ss_pred ------------hhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 72 ------------ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 72 ------------~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
++..++++..-+ .+..+ +....+.|+|+|.+++- . . ....++++.++..+ ++
T Consensus 93 ~~p~~d~~v~~~~~~~g~~~i~G~------~t~~e-~~~A~~~Gad~v~~Fpa---~---~--~gG~~~lk~i~~~~~~i 157 (214)
T 1wbh_A 93 ISPGLTEPLLKAATEGTIPLIPGI------STVSE-LMLGMDYGLKEFKFFPA---E---A--NGGVKALQAIAGPFSQV 157 (214)
T ss_dssp EESSCCHHHHHHHHHSSSCEEEEE------SSHHH-HHHHHHTTCCEEEETTT---T---T--TTHHHHHHHHHTTCTTC
T ss_pred EcCCCCHHHHHHHHHhCCCEEEec------CCHHH-HHHHHHCCCCEEEEecC---c---c--ccCHHHHHHHhhhCCCC
Confidence 111234443321 11222 45566899999988651 1 0 01257889999887 89
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
||++.|||+ ++.+.++++..|+++|. |+++...+.+
T Consensus 158 pvvaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~~~ 193 (214)
T 1wbh_A 158 RFCPTGGIS-PANYRDYLALKSVLCIG-GSWLVPADAL 193 (214)
T ss_dssp EEEEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHHHH
T ss_pred eEEEECCCC-HHHHHHHHhcCCCeEEE-eccccChhhh
Confidence 999999994 69999999855999999 9888766654
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=82.59 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=56.8
Q ss_pred HHHHHHHcCCC------EEEEeccCCCCcCCCCccccHHHH----HHHHhhCCCcEEEecCCCCHHHHHHHH--------
Q 023070 95 YAKMLEDAGCS------LLAVHGRTRDEKDGKKFRADWNAI----KAVKNALRIPVLANGNVRHMEDVQKCL-------- 156 (287)
Q Consensus 95 ~a~~l~~~G~~------~I~vh~rt~~~~~~~~~~~~~~~i----~~i~~~~~ipVi~nGgI~s~~da~~~l-------- 156 (287)
.++++.+.|++ .|++.|.+..+..+. ..-...+ .++++.+++||++.|||.|++++..++
T Consensus 556 ~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g~--~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~ 633 (3089)
T 3zen_D 556 QIRSVIRIAAEVPTKPVIVHIEGGRAGGHHSW--EDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVH 633 (3089)
T ss_dssp HHHHHHHHHTTSTTSCEEEEECCSSSSEECCS--CCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTT
T ss_pred HHHHHHHhhhhcCCCcEEEEEeCCCcCCCCCc--ccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhcccccccc
Confidence 34455566666 777777665443221 1112344 777777899999999999999999999
Q ss_pred ---HhcCccEEEEehhhhhCcc
Q 023070 157 ---EETGCEGVLSAESLLENPA 175 (287)
Q Consensus 157 ---~~~gad~VmiGR~~l~nP~ 175 (287)
. .|||||++|+.++.-+.
T Consensus 634 ~~p~-lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 634 GYPL-MPIDGILVGTAAMATLE 654 (3089)
T ss_dssp TCCC-CCCSEEECSSTTTTCTT
T ss_pred CccC-CCCCEEEecHHHHhCcc
Confidence 5 59999999999987654
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00092 Score=63.19 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=97.8
Q ss_pred CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++++.|+ .++. ||..+.|..|.. +++.-.+.++++|+.+ ++.+.+..+-+|+..++++
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~ 251 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF---------------PPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR 251 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence 68999998887 4554 999999986521 3444456677787776 6788899888999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+++.+++. +.+| ++. ..+++.++++++.+++||.+.-.+.+..++.++++...+|.+++-
T Consensus 252 ~~~~L~~~-l~~i-------EeP-----~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d 311 (441)
T 3vc5_A 252 VGRALDGV-LEYL-------EDP-----TPGIDGMARVAAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLID 311 (441)
T ss_dssp HHHHTTTT-CSEE-------ECC-----SSSHHHHHHHHTTSSSCEEESSSCCSGGGHHHHHHHCCCSEEEEC
T ss_pred HHHHHHHH-HHHh-------hcc-----CCCHHHHHHHHhcCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeec
Confidence 99999987 7666 221 137888999999999999998889999999999998889998874
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00033 Score=58.67 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.-.+.+.+...|++-+-+. .. -+.++++++.+++|||+.|+|+|.+|+.++++ .||++|..+...+.+
T Consensus 118 ~~~~~i~~~~PD~iEiLPG----------i~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~-aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 118 KGVALIQKVQPDCIELLPG----------II-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIA-SGAIAVTTSNKHLWE 185 (192)
T ss_dssp HHHHHHHHHCCSEEEEECT----------TC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHT-TTEEEEEECCGGGGT
T ss_pred HHHHHHhhcCCCEEEECCc----------hh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCeEEEeCCHHHhC
Confidence 3455566666777755422 22 26899999999999999999999999999999 599999999776654
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00061 Score=63.26 Aligned_cols=126 Identities=9% Similarity=0.029 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
+.+++.+++.++ ..+.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+|+..+++
T Consensus 162 ~~~~~~~~~~~~~~~~~G~~~~Kikvg~---------------~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~ 226 (388)
T 4h83_A 162 GEPLGSIADEMHNYQELGLAGVKFKVGG---------------LSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAV 226 (388)
T ss_dssp TCTTCSHHHHHHHHHHHTBSEEEEECSS---------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCceEeecCCC---------------CCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHH
Confidence 345577777666 556799999998641 13344456677787776 578888888899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++.++.+| ++. .+...+++.++++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 227 ~~~~~l~~~~~~~i-------EeP--~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 290 (388)
T 4h83_A 227 DLSRRIADLNIRWF-------EEP--VEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNF 290 (388)
T ss_dssp HHHHHTTTSCCCCE-------ESC--BCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECC
T ss_pred HHHHHhhhcCccee-------ecC--cccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEee
Confidence 99999999998776 221 11123578889999999999999999999999999999877888765
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0024 Score=58.97 Aligned_cols=132 Identities=8% Similarity=0.146 Sum_probs=99.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~vK 82 (287)
+..|+-..++..+++++.+.++ .++.||..+.+..|.. +++.-.+.++++++++ ++.+.+.
T Consensus 138 ~~v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~---------------~~~~di~~v~~vr~a~~g~~~~l~vD 202 (376)
T 4h2h_A 138 DSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR---------------PIEIDIEAIRKVWEAVRGTGIALAAD 202 (376)
T ss_dssp SEEECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CceeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC---------------CHHHHHHHHHHHHhhccCCeeEEEEe
Confidence 3456777888899999888776 5667999999987621 2233345566666543 5778888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+-+|+..+++.+++.+++.+. ++ ++. -.+++.++.+++.+++||.+.-.+.+..++.++++...+|
T Consensus 203 aN~~~~~~~A~~~~~~l~~~~~-~i-------EeP-----~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d 269 (376)
T 4h2h_A 203 GNRGWTTRDALRFSRECPDIPF-VM-------EQP-----CNSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVD 269 (376)
T ss_dssp CTTCCCHHHHHHHHHHCTTSCE-EE-------ESC-----SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred eccCCCHHHHHHHHHHHhhccc-cc-------cCC-----cchhhhHhhhhhcccCccccCcccCCHHHHHHHHHhhccC
Confidence 8889999999999999887764 22 221 1357778899999999999988999999999999977788
Q ss_pred EEEE
Q 023070 163 GVLS 166 (287)
Q Consensus 163 ~Vmi 166 (287)
.|++
T Consensus 270 ~v~~ 273 (376)
T 4h2h_A 270 GFGM 273 (376)
T ss_dssp EECC
T ss_pred cccc
Confidence 8865
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0015 Score=59.39 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
.+++...++++.+++ .+.|+++.+ +.+ .+..+.++.+.+.| ++.+.++... + .....|+.++.+++.+
T Consensus 78 ~~~~~~~~~i~~~~~-~g~~v~v~~--g~~-~~~~~~a~~~~~~g~~~~~i~i~~~~-----G-~~~~~~~~i~~lr~~~ 147 (336)
T 1ypf_A 78 FQPEKRISFIRDMQS-RGLIASISV--GVK-EDEYEFVQQLAAEHLTPEYITIDIAH-----G-HSNAVINMIQHIKKHL 147 (336)
T ss_dssp SSGGGHHHHHHHHHH-TTCCCEEEE--CCS-HHHHHHHHHHHHTTCCCSEEEEECSS-----C-CSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh-cCCeEEEeC--CCC-HHHHHHHHHHHhcCCCCCEEEEECCC-----C-CcHHHHHHHHHHHHhC
Confidence 344556666776654 356888774 444 34456788899999 9999886421 1 1135689999999998
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.|++..|+|.++++++.+.+ .|||+|.++
T Consensus 148 ~~~~vi~G~v~s~e~A~~a~~-aGad~Ivvs 177 (336)
T 1ypf_A 148 PESFVIAGNVGTPEAVRELEN-AGADATKVG 177 (336)
T ss_dssp TTSEEEEEEECSHHHHHHHHH-HTCSEEEEC
T ss_pred CCCEEEECCcCCHHHHHHHHH-cCCCEEEEe
Confidence 655555677999999999988 599999993
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=60.74 Aligned_cols=95 Identities=24% Similarity=0.352 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
.++...+.++.+++....|+.+-+.... .+.++.+.++|++.|+++.-. +.+ ...++.++++++..++|
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~a~-----G~~-~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDSAH-----GHS-LNIIRTLKEIKSKMNID 147 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECCSC-----CSB-HHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeCCC-----CCc-HHHHHHHHHHHHhcCCc
Confidence 5677788888888777788888874422 677888999999999886221 110 12346788888888999
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
|++ |++.|++++..+.+ .|+|+|.+|
T Consensus 148 Viv-g~v~t~e~A~~l~~-aGaD~I~VG 173 (361)
T 3khj_A 148 VIV-GNVVTEEATKELIE-NGADGIKVG 173 (361)
T ss_dssp EEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred EEE-ccCCCHHHHHHHHH-cCcCEEEEe
Confidence 987 67899999998887 699999996
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00048 Score=59.31 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChh--hhh--cC-------cccccccCChHHHHHHHHHHh----
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQR--IAR--RG-------NYGAFLMDNLPLVKSLVEKLA---- 72 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~--~~~--~~-------~~G~~l~~~~~~~~~iv~~v~---- 72 (287)
.|++.=+.+.+++++.+.++ +++.|++.|++-+-.|.. ..+ +. ++|. ++ +.+.+...++.=.
T Consensus 26 ~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl-~~d~~~~A~~aGAd~v~ 103 (225)
T 1mxs_A 26 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VL-DRSMFAAVEAAGAQFVV 103 (225)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CC-SHHHHHHHHHHTCSSEE
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-Ee-eHHHHHHHHHCCCCEEE
Confidence 57787788899998888887 456789999997654431 111 11 2243 22 3333333222211
Q ss_pred ------------hccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccc-cHHHHHHHHhhC-CC
Q 023070 73 ------------LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNAL-RI 138 (287)
Q Consensus 73 ------------~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~-~i 138 (287)
+..++++..-+ .+..+ +..+.+.|+|+|-+++- . .. -.++++.++..+ ++
T Consensus 104 ~p~~d~~v~~~~~~~g~~~i~G~------~t~~e-~~~A~~~Gad~vk~FPa--~-------~~~G~~~lk~i~~~~~~i 167 (225)
T 1mxs_A 104 TPGITEDILEAGVDSEIPLLPGI------STPSE-IMMGYALGYRRFKLFPA--E-------ISGGVAAIKAFGGPFGDI 167 (225)
T ss_dssp CSSCCHHHHHHHHHCSSCEECEE------CSHHH-HHHHHTTTCCEEEETTH--H-------HHTHHHHHHHHHTTTTTC
T ss_pred eCCCCHHHHHHHHHhCCCEEEee------CCHHH-HHHHHHCCCCEEEEccC--c-------cccCHHHHHHHHhhCCCC
Confidence 11222322211 11222 34456788888888541 0 11 257888998877 89
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
||++.||| +++.+.++++..|+++|. |++++..+++
T Consensus 168 pvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~~i 203 (225)
T 1mxs_A 168 RFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDSSWI 203 (225)
T ss_dssp EEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred eEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCchhh
Confidence 99999999 568999999856999999 9888765544
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0027 Score=53.63 Aligned_cols=127 Identities=9% Similarity=0.077 Sum_probs=80.1
Q ss_pred EEEec--CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-
Q 023070 12 FVQFC--ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN- 88 (287)
Q Consensus 12 ~~Qi~--g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~- 88 (287)
=+-++ +++|+.+.+.+ ++.|+|.|.+|.... .+ .++.+++.. -|++...+...
T Consensus 57 D~kl~DI~~t~~~~v~~~--~~~Gad~vtvh~~~g----------------~~----~i~~~~~~~--gv~vl~~t~~~~ 112 (208)
T 2czd_A 57 DLKLADIPNTNRLIARKV--FGAGADYVIVHTFVG----------------RD----SVMAVKELG--EIIMVVEMSHPG 112 (208)
T ss_dssp EEEECSCHHHHHHHHHHH--HHTTCSEEEEESTTC----------------HH----HHHHHHTTS--EEEEECCCCSGG
T ss_pred EeeeCchHHHHHHHHHHH--HhcCCCEEEEeccCC----------------HH----HHHHHHHhC--CcEEEEecCCcc
Confidence 35666 66666554433 467999999995311 11 244444443 34444333211
Q ss_pred -----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCH-HHHHHHHHhcCc
Q 023070 89 -----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHM-EDVQKCLEETGC 161 (287)
Q Consensus 89 -----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~-~da~~~l~~~ga 161 (287)
.+....+++...+.|++++.+.+. ..+.++++++..+ -++++.|||+.. .++.++++ .|+
T Consensus 113 ~~~~~~~~v~~~~~~a~~~G~~G~~~~~~------------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~-aGa 179 (208)
T 2czd_A 113 ALEFINPLTDRFIEVANEIEPFGVIAPGT------------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVK-AGA 179 (208)
T ss_dssp GGTTTGGGHHHHHHHHHHHCCSEEECCCS------------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHH-HTC
T ss_pred hhhHHHHHHHHHHHHHHHhCCcEEEECCC------------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHH-cCC
Confidence 233456677788999998865422 1244566766655 367799999862 27888887 599
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|.+.+||+++..++
T Consensus 180 d~vvvGr~I~~a~d 193 (208)
T 2czd_A 180 DYIIVGRAIYNAPN 193 (208)
T ss_dssp SEEEECHHHHTSSS
T ss_pred CEEEEChHHhcCCC
Confidence 99999999987654
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0012 Score=57.09 Aligned_cols=148 Identities=10% Similarity=0.121 Sum_probs=95.2
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh--hh---hc------CcccccccCChHHHHHHHHH------
Q 023070 9 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR--IA---RR------GNYGAFLMDNLPLVKSLVEK------ 70 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~--~~---~~------~~~G~~l~~~~~~~~~iv~~------ 70 (287)
.|++.=|.+.++++..+.++. ++.|++.||+-+-.|.. .. ++ -+.|. ++ +++.+...+++
T Consensus 34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGT-Vl-t~~~a~~Ai~AGA~fIv 111 (232)
T 4e38_A 34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGT-IL-NGEQALAAKEAGATFVV 111 (232)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEEC-CC-SHHHHHHHHHHTCSEEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECC-cC-CHHHHHHHHHcCCCEEE
Confidence 478888999999999999984 56789999998765541 11 11 12233 22 35544444332
Q ss_pred -----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 71 -----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 71 -----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
.++ .++|+...+. +.. | +....++|+|+|-+.+... . ...++++.++..+ ++
T Consensus 112 sP~~~~~vi~~~~~-~gi~~ipGv~---Tpt---E-i~~A~~~Gad~vK~FPa~~---~-----gG~~~lkal~~p~p~i 175 (232)
T 4e38_A 112 SPGFNPNTVRACQE-IGIDIVPGVN---NPS---T-VEAALEMGLTTLKFFPAEA---S-----GGISMVKSLVGPYGDI 175 (232)
T ss_dssp CSSCCHHHHHHHHH-HTCEEECEEC---SHH---H-HHHHHHTTCCEEEECSTTT---T-----THHHHHHHHHTTCTTC
T ss_pred eCCCCHHHHHHHHH-cCCCEEcCCC---CHH---H-HHHHHHcCCCEEEECcCcc---c-----cCHHHHHHHHHHhcCC
Confidence 222 1444433321 222 2 3445789999998854311 0 1358899998865 79
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
|++..|||. ++.+.+.++ .|+.++.+|. .+.+|.+.
T Consensus 176 p~~ptGGI~-~~n~~~~l~-aGa~~~vgGs-~l~~~~~i 211 (232)
T 4e38_A 176 RLMPTGGIT-PSNIDNYLA-IPQVLACGGT-WMVDKKLV 211 (232)
T ss_dssp EEEEBSSCC-TTTHHHHHT-STTBCCEEEC-GGGCHHHH
T ss_pred CeeeEcCCC-HHHHHHHHH-CCCeEEEECc-hhcChHHh
Confidence 999999995 899999998 5899888775 44566554
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0066 Score=55.82 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=92.5
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+.++ .++.||..+.+..|- +++.-.+.++++++.+ ++.+.+...-+|+.++++++
T Consensus 144 ~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~ 207 (372)
T 3cyj_A 144 PLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYW 207 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 4566666554 667899999997541 3444566777777765 57888888889999999999
Q ss_pred HHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++. ++.+| ++.- .+.||+..+++++.++ +||.+.-.+.+..++.++ . ..+|.|.+
T Consensus 208 ~~~l~~~~~i~~i-------EqP~---~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~-~-~a~d~i~i 269 (372)
T 3cyj_A 208 AGAFAREAGISYL-------EEPV---SSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL-A-GCVDILQA 269 (372)
T ss_dssp HHHHHHHHCCCEE-------ECSS---CTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH-H-TTCSEEEE
T ss_pred HHHHHhhcCCcEE-------ECCC---CcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH-h-CCCCEEec
Confidence 9999998 88776 2211 1357899999998887 799999999999999888 4 68999987
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0045 Score=54.12 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+++|.|- |-.. . + ....+.++.+++.+++||..-+.|.+..++.+++. .|||+|.++-.
T Consensus 65 ~~p~~~A~~~~~~GA~~isvl--t~~~-~-f--~G~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~-~GAD~VlL~~~ 137 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVL--TEPH-R-F--GGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEE--CCCS-S-S--CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEEHH
T ss_pred CCHHHHHHHHHHcCCCEEEEe--cchh-h-h--ccCHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHH-cCCCEEEECcc
Confidence 578899999999999999883 1111 1 1 12457788888899999999999999999998887 69999999999
Q ss_pred hhh
Q 023070 170 LLE 172 (287)
Q Consensus 170 ~l~ 172 (287)
.+.
T Consensus 138 ~l~ 140 (254)
T 1vc4_A 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred chH
Confidence 887
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0074 Score=53.36 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=94.8
Q ss_pred CCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEE
Q 023070 9 RPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSC 81 (287)
Q Consensus 9 ~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~v 81 (287)
.|+++-+ +|.+|++..+.++ +++.|+.+|.|--+... -|..| -..+...+-|++++++. ++|+.+
T Consensus 77 ~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~-------~~k~l-~~~~e~~~~I~aa~~a~~~~g~~~~i 148 (275)
T 2ze3_A 77 IPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGL-------TPTEL-YDLDSQLRRIEAARAAIDASGVPVFL 148 (275)
T ss_dssp SCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSS-------SSSCB-CCHHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCC-------CCCcc-CCHHHHHHHHHHHHHhHhhcCCCeEE
Confidence 5777654 4568988888877 55779999999855421 12233 35555556666665542 677766
Q ss_pred EecCCC-----------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec--CCCC
Q 023070 82 KIRVFP-----------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRH 148 (287)
Q Consensus 82 KiR~g~-----------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG--gI~s 148 (287)
--|... ..+++++=++.++++|++.|.+++. .+.+.++++.+.+++|+-.++ +..+
T Consensus 149 ~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~n~~~~~~~~~ 217 (275)
T 2ze3_A 149 NARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA-----------LQSQDIRALADALRVPLNVMAFPGSPV 217 (275)
T ss_dssp EEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC-----------CCHHHHHHHHHHCSSCEEEECCTTSCC
T ss_pred EEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC-----------CCHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 666532 2467788888999999999988754 345778999999999987764 3445
Q ss_pred HHHHHHHHHhcCccEEEEehhhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l 171 (287)
.+ ++- +.|+..|.+|-.++
T Consensus 218 ~~---eL~-~lGv~~v~~~~~~~ 236 (275)
T 2ze3_A 218 PR---ALL-DAGAARVSFGQSLM 236 (275)
T ss_dssp HH---HHH-HTTCSEEECTTHHH
T ss_pred HH---HHH-HcCCcEEEEChHHH
Confidence 43 333 46999998875543
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=58.56 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccCC-cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 64 VKSLVEKLALNLNV-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 64 ~~~iv~~v~~~~~~-pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
+.+-++++++.... +|.+-+. +. +-++...++|+|+|-++. .+.+.++++++.+ ++||
T Consensus 195 i~~ai~~~r~~~~~~kI~vev~---tl----ee~~eA~~aGaD~I~ld~------------~~~e~l~~~v~~~~~~~~I 255 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEVEVE---NL----DELDDALKAGADIIMLDN------------FNTDQMREAVKRVNGQARL 255 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEESS------------CCHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---CH----HHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCeE
Confidence 34556666665432 4555432 22 234445678999998863 3346667766665 5999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.+ +|+|++.+|.....-|+
T Consensus 256 ~ASGGI-t~~~i~~~a~-~GvD~isvGsli~~a~~ 288 (296)
T 1qap_A 256 EVSGNV-TAETLREFAE-TGVDFISVGALTKHVRA 288 (296)
T ss_dssp EECCCS-CHHHHHHHHH-TTCSEEECSHHHHEEEC
T ss_pred EEECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCCC
Confidence 999999 8999999988 69999999986655554
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0034 Score=56.12 Aligned_cols=149 Identities=14% Similarity=0.154 Sum_probs=91.5
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCccc-ccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYG-AFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G-~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|+++-+ +| +|+...+.++. .+.|+.+|.|--+...+ +.++.+ ..|....+.+.+|-.++....+.++.|-
T Consensus 83 ~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ 159 (298)
T 3eoo_A 83 NLPLLVDIDTGWG-GAFNIARTIRSFIKAGVGAVHLEDQVGQK--RCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIM 159 (298)
T ss_dssp CSCEEEECTTCSS-SHHHHHHHHHHHHHTTCSEEEEECBCCCC--CTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEE
T ss_pred CCeEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEECCCCCCc--ccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEE
Confidence 45777544 33 88888888874 56799999997443111 112222 3344444445554443333334445544
Q ss_pred ecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHHHHH
Q 023070 83 IRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKC 155 (287)
Q Consensus 83 iR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da~~~ 155 (287)
-|.. ...+++++=++.+.++|+|.|-+++. .+.+.++++.+.+++||.+| +|-.-.-+..++
T Consensus 160 ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~-----------~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL 228 (298)
T 3eoo_A 160 ARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM-----------KTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDEL 228 (298)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-----------CSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHH
T ss_pred EeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC-----------CCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHH
Confidence 4442 23457788888899999999999865 24577888888888999876 332111123333
Q ss_pred HHhcCccEEEEehhhh
Q 023070 156 LEETGCEGVLSAESLL 171 (287)
Q Consensus 156 l~~~gad~VmiGR~~l 171 (287)
- +.|+..|.+|-.++
T Consensus 229 ~-~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 229 K-GANVDIALYCCGAY 243 (298)
T ss_dssp H-HTTCCEEEECSHHH
T ss_pred H-HcCCeEEEEchHHH
Confidence 3 46999999986654
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=57.64 Aligned_cols=124 Identities=14% Similarity=0.268 Sum_probs=95.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-Chhh
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 91 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~ 91 (287)
..+...+|+.+++.++...+||..+.+..|.. . -.+.++++++..+..+.+..+-+| +..+
T Consensus 128 ~~~~~~~~e~~~~~a~~~~~g~~~~K~Kvg~~--------------~----d~~~v~avR~~~~~~l~vDaN~~~t~~~~ 189 (338)
T 3ijl_A 128 FTIGIDTPDVVRAKTKECAGLFNILKVKLGRD--------------N----DKEMIETIRSVTDLPIAVDANQGWKDRQY 189 (338)
T ss_dssp CBCCCCCHHHHHHHHHHHHTTCSSEEEECSSS--------------C----HHHHHHHHHTTCCCCEEEECTTCCCCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHhcccEEEEecCcH--------------H----HHHHHHHHHhhcCCcEEEECcCCCCCHHH
Confidence 45566799999988875434899999987631 1 345678888888888888888899 5899
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++++.+++.++.+| ++.- .+.|++.++++++.+++||.+.-.+.+..++.+++ ..+|.|++
T Consensus 190 A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~--~a~d~i~~ 252 (338)
T 3ijl_A 190 ALDMIHWLKEKGIVMI-------EQPM---PKEQLDDIAWVTQQSPLPVFADESLQRLGDVAALK--GAFTGINI 252 (338)
T ss_dssp HHHHHHHHHHTTEEEE-------ECCS---CTTCHHHHHHHHHTCSSCEEESTTCCSGGGTGGGB--TTBSEEEE
T ss_pred HHHHHHHHhhCCCCEE-------ECCC---CCCcHHHHHHHHhcCCCCEEECCCCCCHHHHHHHH--hhCCEEEe
Confidence 9999999999987665 2211 13578999999999999999998999999887765 36887764
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.009 Score=53.21 Aligned_cols=147 Identities=9% Similarity=0.066 Sum_probs=91.8
Q ss_pred CCCEEEEec---CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccc--ccccCChHHHHHHHHHHhhc---cCCc
Q 023070 8 DRPLFVQFC---ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYG--AFLMDNLPLVKSLVEKLALN---LNVP 78 (287)
Q Consensus 8 ~~p~~~Qi~---g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G--~~l~~~~~~~~~iv~~v~~~---~~~p 78 (287)
+.|+++-+= | +|+...+.++ +++.|+.+|.|--+... .+.++.| +.-+-..+...+-|++++++ .++-
T Consensus 75 ~~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~~--k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~ 151 (290)
T 2hjp_A 75 SIPLIADIDTGFG-NAVNVHYVVPQYEAAGASAIVMEDKTFP--KDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_dssp SSCEEEECTTTTS-SHHHHHHHHHHHHHHTCSEEEEECBCSS--CCC-------CCBCCHHHHHHHHHHHHHHCSSTTSE
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCC--ccccccccCCCcccCHHHHHHHHHHHHHhcccCCcE
Confidence 467776542 4 8888888887 45679999999855321 1223333 22233344444444544443 2455
Q ss_pred EEEEecC---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEec---CCCCHH
Q 023070 79 VSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHME 150 (287)
Q Consensus 79 v~vKiR~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nG---gI~s~~ 150 (287)
|..|.-. +...+++++=++.++++|++.|.++++.. +.+.++++.+.++ +|+++|- ...+.
T Consensus 152 i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~----------~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~- 220 (290)
T 2hjp_A 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK----------TPDEILAFVKSWPGKVPLVLVPTAYPQLTE- 220 (290)
T ss_dssp EEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCCS----------SSHHHHHHHHHCCCSSCEEECGGGCTTSCH-
T ss_pred EEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCCC----------CHHHHHHHHHHcCCCCCEEEeccCCCCCCH-
Confidence 5555432 22367888889999999999999987432 2356788888888 9999873 23343
Q ss_pred HHHHHHHhcC-ccEEEEehhhh
Q 023070 151 DVQKCLEETG-CEGVLSAESLL 171 (287)
Q Consensus 151 da~~~l~~~g-ad~VmiGR~~l 171 (287)
.+ |.+.| +..|.+|-.++
T Consensus 221 --~e-L~~lG~v~~v~~~~~~~ 239 (290)
T 2hjp_A 221 --AD-IAALSKVGIVIYGNHAI 239 (290)
T ss_dssp --HH-HHTCTTEEEEEECSHHH
T ss_pred --HH-HHhcCCeeEEEechHHH
Confidence 33 33479 99999986654
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0019 Score=58.51 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=89.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g 86 (287)
.|+-.-+...+|+++.+.++ +.||..+.+..|.+ |.. ++.-.+.++++++.+ ++.+.+..+-+
T Consensus 70 v~~~~ti~~~~~e~~~~~~~--~~G~~~~KiKvg~~---------g~~----~~~d~~~v~avR~~~G~~~~L~vDaN~~ 134 (327)
T 2opj_A 70 VPVNATVPAVGPEEAARIVA--SSGCTTAKVKVAER---------GQS----EANDVARVEAVRDALGPRGRVRIDVNGA 134 (327)
T ss_dssp EEBCEEECSCCHHHHHHHHH--HHCCSEEEEECCC-------------------CHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eEEeEEeCCCCHHHHHHHHH--HCCCCEEEEEeCCC---------CCC----HHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 35555566678888655544 56999999987643 112 222346677777765 57888888889
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.++++++++.+++.++.+| ++. . .+++.++++++.+++||.+.-.+.+..++.++++...+|.|.+
T Consensus 135 w~~~~A~~~~~~L~~~~l~~i-------EqP----~-~~~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~i 202 (327)
T 2opj_A 135 WDVDTAVRMIRLLDRFELEYV-------EQP----C-ATVDELAEVRRRVSVPIAADESIRRAEDPLRVRDAEAADVVVL 202 (327)
T ss_dssp SCHHHHHHHHHHHGGGCEEEE-------ECC----S-SSHHHHHHHHHHCSSCEEC-----------CTTTTTCCSBEEE
T ss_pred CCHHHHHHHHHHHHhcCCcEE-------eCC----C-CCHHHHHHHHhhCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 999999999999999887655 221 1 2577888999999999999999999999999888777899887
Q ss_pred ehhhhhC
Q 023070 167 AESLLEN 173 (287)
Q Consensus 167 GR~~l~n 173 (287)
==.-.+.
T Consensus 203 k~~~~GG 209 (327)
T 2opj_A 203 KVQPLGG 209 (327)
T ss_dssp CHHHHTS
T ss_pred CccccCC
Confidence 4433333
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0085 Score=54.03 Aligned_cols=146 Identities=14% Similarity=0.084 Sum_probs=92.6
Q ss_pred CCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEE
Q 023070 8 DRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVS 80 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~ 80 (287)
+.|+++-+ +| +|+...+.++ +++.|+.+|.|--+... .+.++.|+.-+-..+...+-|++++++. ++-|.
T Consensus 101 ~~PviaD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~--k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ 177 (318)
T 1zlp_A 101 NLCVVVDGDTGGG-GPLNVQRFIRELISAGAKGVFLEDQVWP--KKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLV 177 (318)
T ss_dssp SSEEEEECTTCSS-SHHHHHHHHHHHHHTTCCEEEEECBCSS--CCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCEEEeCCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCC--ccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEE
Confidence 46777665 35 8888888777 55679999999755321 1223334332334444444455554432 34444
Q ss_pred EEecCC--CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cC---CCCHHHH
Q 023070 81 CKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GN---VRHMEDV 152 (287)
Q Consensus 81 vKiR~g--~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---Gg---I~s~~da 152 (287)
.|.-.. ...+++++=++.++++|+|.|.+++. .+.+.++++.+.+++|+.+| || ..+.+
T Consensus 178 ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-----------~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~-- 244 (318)
T 1zlp_A 178 ARTDARAPHGLEEGIRRANLYKEAGADATFVEAP-----------ANVDELKEVSAKTKGLRIANMIEGGKTPLHTPE-- 244 (318)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-----------CSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHH--
T ss_pred EeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHH--
Confidence 443211 11257788889999999999999854 34577899999999999765 32 34433
Q ss_pred HHHHHhcCccEEEEehhhh
Q 023070 153 QKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l 171 (287)
++- +.|+..|.+|-.++
T Consensus 245 -eL~-~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 245 -EFK-EMGFHLIAHSLTAV 261 (318)
T ss_dssp -HHH-HHTCCEEEECSHHH
T ss_pred -HHH-HcCCeEEEEchHHH
Confidence 333 46999999987655
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0054 Score=58.03 Aligned_cols=124 Identities=13% Similarity=0.115 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
+.+|+++++.|+ .++ .||..|.|..|.+ +++.-.+.++++++.. ++.+.+...-+|+..+++
T Consensus 180 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~ 244 (450)
T 3mzn_A 180 AMTPEAVANLARAAYDRYGFKDFKLKGGVL---------------RGEEEADCIRALHEAFPEARLALDPNGAWKLDEAV 244 (450)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTCBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 358999998887 455 5999999987642 2333355677777765 577888888899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+++.+++. +.+| ++.-. +.| ++.++++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus 245 ~~~~~L~~~-i~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~ 310 (450)
T 3mzn_A 245 RVLEPIKHL-LSYA-------EDPCG---QEGGFSGRETMAEFKKRTGLPTATNMIATDYKQLQYAVQLNSVDIPLA 310 (450)
T ss_dssp HHHGGGGGG-CSEE-------ESSBC---CBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred HHHHHhhhc-ccee-------eCCCC---cccccchHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999999887 6655 22111 223 67889999999999988777889999999998777887754
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0036 Score=59.60 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
+.+|+++++.|+ .++ .||..|.|..|.+ +++.-.+.++++++.. ++.+.+...-+|+..+++
T Consensus 198 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai 262 (470)
T 3p0w_A 198 AMTPAAIARLAEAATERYGFADFKLKGGVM---------------PGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI 262 (470)
T ss_dssp BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTBBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHH
Confidence 468999998887 466 5999999987642 2233345677777765 677888888889999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+++.+++. +.+| ++.-. +.| ++.++++++.+++||.+.=-+.++.++.++++...+|.+++
T Consensus 263 ~~~~~Le~~-l~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~ 328 (470)
T 3p0w_A 263 ALCKGQGHL-VAYA-------EDPCG---PEAGYSGREVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLA 328 (470)
T ss_dssp HHHTTCTTT-CSEE-------ESCBC---CBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBC
T ss_pred HHHHhcccc-ceee-------cCCCC---hhhccchHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999988876 6555 22111 223 67889999999999998777889999999999777887754
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00077 Score=57.67 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCcccc-H-HHHHHHHhhC-C
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRAD-W-NAIKAVKNAL-R 137 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~-~-~~i~~i~~~~-~ 137 (287)
.+.+.++..++. ++.+.+=+. .. .+ .+++.+.|.+.|.++++..-++.. .+...+ . ..++.+++.. +
T Consensus 99 e~~~~~~~a~~~-Gl~~iv~v~--~~-~e----~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~ 170 (219)
T 2h6r_A 99 DIEAVINKCKNL-GLETIVCTN--NI-NT----SKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKD 170 (219)
T ss_dssp HHHHHHHHHHHH-TCEEEEEES--SS-HH----HHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHC-CCeEEEEeC--Cc-hH----HHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCC
Confidence 355555554432 554544432 22 11 244566788888888776421110 111112 3 3344455544 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+||++.|||++++++..+.+ .|+|||.+|++++.-+++..
T Consensus 171 ~~ii~ggGI~~~~~~~~~~~-~gaDgvlVGsAi~~~~d~~~ 210 (219)
T 2h6r_A 171 VKVLCGAGISKGEDVKAALD-LGAEGVLLASGVVKAKNVEE 210 (219)
T ss_dssp CEEEECSSCCSHHHHHHHHT-TTCCCEEESHHHHTCSSHHH
T ss_pred CeEEEEeCcCcHHHHHHHhh-CCCCEEEEcHHHhCcccHHH
Confidence 99999999999999998876 69999999999997666544
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=59.99 Aligned_cols=128 Identities=12% Similarity=0.027 Sum_probs=92.7
Q ss_pred HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHH
Q 023070 20 PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 20 ~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a 96 (287)
++++.+.|+ .++.||..+.+..|.+.. +-. -..+++.-.+.++++|+.+ ++++.+...-+|+..+++.++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~------~~~-~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~ 221 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGR------HMP-LWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVL 221 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTT------TSC-HHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCc------ccc-ccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHH
Confidence 466666555 567899999999874321 000 0012455667788888864 688999998999999999999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+++.++.+| ++ |.+.|++.++++++. +.+||...-.+. ..++.++++...+|.|.+
T Consensus 222 ~~L~~~~l~~i-------Ee----P~~~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~ 284 (392)
T 3v5c_A 222 AALSDVNLYWL-------EA----AFHEDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HHTTTSCCCEE-------EC----SSSCCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECC
T ss_pred HhcccCCCeEE-------eC----CCCcCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEe
Confidence 99999888777 22 112467777888765 678888777777 788999998777888866
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0086 Score=53.25 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=95.7
Q ss_pred CCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcE
Q 023070 8 DRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPV 79 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv 79 (287)
+.|+++-+ +| +|++..+.++ +++.|+++|.|--+. |.++ ++..+. +-..+...+-|++++++- ++-|
T Consensus 82 ~~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrc---gh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i 156 (287)
T 3b8i_A 82 RLPVIADADHGYG-NALNVMRTVVELERAGIAALTIEDTLLPAQF---GRKSTD-LICVEEGVGKIRAALEARVDPALTI 156 (287)
T ss_dssp SSCEEEECTTCSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCT---TTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEE
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCcccc---CCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEE
Confidence 46777665 35 8888888887 456799999998653 3222 333334 455666666666665542 3445
Q ss_pred EEEecC-CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe-cC---CCCHHHHHH
Q 023070 80 SCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GN---VRHMEDVQK 154 (287)
Q Consensus 80 ~vKiR~-g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n-Gg---I~s~~da~~ 154 (287)
..|.-. ....+++++=++.++++|++.|.+++. .+.+.++++.+.+++|++.. || ..|.+ +
T Consensus 157 ~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~---e 222 (287)
T 3b8i_A 157 IARTNAELIDVDAVIQRTLAYQEAGADGICLVGV-----------RDFAHLEAIAEHLHIPLMLVTYGNPQLRDDA---R 222 (287)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC-----------CSHHHHHHHHTTCCSCEEEECTTCGGGCCHH---H
T ss_pred EEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhCCCCEEEeCCCCCCCCCHH---H
Confidence 555433 123467888899999999999999854 23477899999999998843 32 34443 3
Q ss_pred HHHhcCccEEEEehhhh
Q 023070 155 CLEETGCEGVLSAESLL 171 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l 171 (287)
+- +.|+..|..|-.++
T Consensus 223 L~-~lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 223 LA-RLGVRVVVNGHAAY 238 (287)
T ss_dssp HH-HTTEEEEECCCHHH
T ss_pred HH-HcCCcEEEEChHHH
Confidence 33 46999999886554
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0035 Score=53.63 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=82.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChh
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQ 90 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~ 90 (287)
+-+. ..|+.+.+++ .+.|+|.|.+|..+. .+.+.+.++.+++.- ...+.|-+-..++.+
T Consensus 65 lKl~-Dip~t~~~~~--~~~Gad~vtVH~~~g----------------~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~ 125 (221)
T 3exr_A 65 TKCA-DAGGTVAKNN--AVRGADWMTCICSAT----------------IPTMKAARKAIEDINPDKGEIQVELYGDWTYD 125 (221)
T ss_dssp EEEC-SCHHHHHHHH--HTTTCSEEEEETTSC----------------HHHHHHHHHHHHHHCTTTCEEEEECCSSCCHH
T ss_pred EEee-ccHHHHHHHH--HHcCCCEEEEeccCC----------------HHHHHHHHHHHHhcCCCcceEEEEEcCCCCHH
Confidence 4454 6688877763 667999999995311 233555556555431 133444443434433
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
. ++.+.+.|++.+.+|-....+..+. ......++.+++.. +++|.+.||| +++++..+.+ .|+|.+++||
T Consensus 126 ~----~~~~~~~~~~~~v~~~a~~~~~~Gv--v~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~~-aGad~~VvG~ 197 (221)
T 3exr_A 126 Q----AQQWLDAGISQAIYHQSRDALLAGE--TWGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFEG-VDVFTFIAGR 197 (221)
T ss_dssp H----HHHHHHTTCCEEEEECCHHHHHHTC--CCCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGTT-CCCSEEEECH
T ss_pred H----HHHHHcCCHHHHHHHHHHhcCCCcc--ccCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHH-CCCCEEEECc
Confidence 3 3345678999998873222111111 12233455555543 6889999999 5677776666 6999999999
Q ss_pred hhhhCcc
Q 023070 169 SLLENPA 175 (287)
Q Consensus 169 ~~l~nP~ 175 (287)
+++..++
T Consensus 198 ~I~~a~d 204 (221)
T 3exr_A 198 GITEAKN 204 (221)
T ss_dssp HHHTSSS
T ss_pred hhhCCCC
Confidence 9886544
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0065 Score=54.04 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred HHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 66 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 66 ~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
+-++.+++..+ .+|.+-++ + .+-++.+.++|+|+|-++..+. +.++++.+.+ ++|++
T Consensus 184 ~av~~ar~~~~~~~~IgVev~---t----~eea~eA~~aGaD~I~ld~~~~------------~~~k~av~~v~~~ipi~ 244 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEVR---S----LEELEEALEAGADLILLDNFPL------------EALREAVRRVGGRVPLE 244 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEES---S----HHHHHHHHHHTCSEEEEESCCH------------HHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHhCCCCCEEEEEeC---C----HHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhCCCCeEE
Confidence 34555555542 45555321 2 2334556678999999985322 2334443333 69999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
++||| +++.+.++.+ +|+|+|.+|.....-|++
T Consensus 245 AsGGI-t~eni~~~a~-tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 245 ASGNM-TLERAKAAAE-AGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp EESSC-CHHHHHHHHH-HTCSEEECTHHHHSCCCC
T ss_pred EEcCC-CHHHHHHHHH-cCCCEEEEcHHHcCCCce
Confidence 99999 5899998887 799999999877665653
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0079 Score=54.23 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=84.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. .+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~~ai~l 98 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCG----------NTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATSTAIEL 98 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHHHHHHH
Confidence 6778888777 5677999998872 223333334555566666665554 589999875 377899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 99 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~ 159 (316)
T 3e96_A 99 GNAAKAAGADAVMIHMPIHPY---VTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAP 159 (316)
T ss_dssp HHHHHHHTCSEEEECCCCCSC---CCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTT
T ss_pred HHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHc
Confidence 999999999999875322110 0111234667888888889986 66 65567777777664
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=60.11 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+.++.+.++|++.|+++.-.. . ...-|+.++.+++.. ++||++ |+|.|++++..+.+ .|||+|.+|
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G-----~-~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~-aGaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA-----H-AKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLAS-CGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC-----S-SHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-----C-cHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHH-cCCCEEEEc
Confidence 5677889999999999999963221 1 023478899999875 788887 67999999998888 599999985
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=56.54 Aligned_cols=91 Identities=15% Similarity=0.251 Sum_probs=60.7
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----CC
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LR 137 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ 137 (287)
.+-++++++... .++.+-+. +.++ ++...++|+|+|-++.. +.+.++++++. .+
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 229 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE---SFEE----AKNAMNAGADIVMCDNL------------SVLETKEIAAYRDAHYPF 229 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES---SHHH----HHHHHHHTCSEEEEETC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCceEEEEcC---CHHH----HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 455666666553 35555432 2222 34445689999988741 12344443332 24
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
+||.++||| +++.+.++.+ +|+|++.+|+.....|++
T Consensus 230 ~~i~AsGGI-~~~ni~~~~~-aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 230 VLLEASGNI-SLESINAYAK-SGVDAISVGALIHQATFI 266 (273)
T ss_dssp CEEEEESSC-CTTTHHHHHT-TTCSEEECTHHHHTCCCC
T ss_pred cEEEEECCC-CHHHHHHHHH-cCCcEEEEcHHhcCCCCC
Confidence 999999999 8899999987 699999999987766654
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0071 Score=52.09 Aligned_cols=104 Identities=15% Similarity=0.258 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 62 PLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 62 ~~~~~iv~~v~~~~~~pv~vKiR~g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
..+..+++.+...-++-|+|.--.+. +..+..++|+.+++.|+.+|.+. ..+.++++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~--------------~~~~i~~ir~~v~~ 70 (232)
T 3igs_A 5 SLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE--------------GIDNLRMTRSLVSV 70 (232)
T ss_dssp CHHHHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE--------------SHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC--------------CHHHHHHHHHhcCC
Confidence 44566666663333455555432222 35577899999999999998762 24779999999999
Q ss_pred cEEE-e----cC--C---CCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 139 PVLA-N----GN--V---RHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 139 pVi~-n----Gg--I---~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
||++ + || + .+.+++.++++ .|+|.|.++.+...+|....++
T Consensus 71 Pvig~~k~d~~~~~~~I~~~~~~i~~~~~-~Gad~V~l~~~~~~~p~~l~~~ 121 (232)
T 3igs_A 71 PIIGIIKRDLDESPVRITPFLDDVDALAQ-AGAAIIAVDGTARQRPVAVEAL 121 (232)
T ss_dssp CEEEECBCCCSSCCCCBSCSHHHHHHHHH-HTCSEEEEECCSSCCSSCHHHH
T ss_pred CEEEEEeecCCCcceEeCccHHHHHHHHH-cCCCEEEECccccCCHHHHHHH
Confidence 9985 1 33 3 46678988887 5999999998888888654443
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.02 Score=50.87 Aligned_cols=126 Identities=16% Similarity=0.138 Sum_probs=84.4
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 86 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCG----------TTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGS-NSTAEAIA 86 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHH
Confidence 37778888777 5677999998872 223333345555566666666544 4899887532 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~------nGgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+. .|---+++.+.++.+
T Consensus 87 la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (292)
T 2vc6_A 87 FVRHAQNAGADGVLIVSPYYNK---PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE 152 (292)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence 9999999999999776432211 00012245677888888999875 343457888887765
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.028 Score=50.27 Aligned_cols=131 Identities=16% Similarity=0.095 Sum_probs=86.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 102 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIRL 102 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHH
Confidence 6778888777 5677999998872 223333334555566666666554 589988753 2466899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHHhcCccE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~~~gad~ 163 (287)
++.+++.|+|++.+..-.... .+...-.++++.+.+++++||+ +| |---+++.+.++.+...+-|
T Consensus 103 a~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvg 173 (304)
T 3l21_A 103 AKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVG 173 (304)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEE
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 999999999999886432211 0111234667888888899986 54 55567888877765333333
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.012 Score=53.00 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=83.6
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. +..++++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~ 97 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNG----------NTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIE 97 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECc----------ccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHH
Confidence 36777888777 5677999988762 223333344555566666666544 5899998755 6788999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE-e-cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N-GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~-n-GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+. | .|+-+++.+.++.+
T Consensus 98 la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~tg~l~~~~~~~La~ 159 (314)
T 3d0c_A 98 LGKSAIDSGADCVMIHQPVHPY---ITDAGAVEYYRNIIEALDAPSIIYFKDAHLSDDVIKELAP 159 (314)
T ss_dssp HHHHHHHTTCSEEEECCCCCSC---CCHHHHHHHHHHHHHHSSSCEEEEECCTTSCTHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCHHHHHHHHc
Confidence 9999999999999876332211 00012246677888888999864 4 22267787777754
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0037 Score=55.24 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+++|.|-.- .. + + .-..+.++.+++.+++||+..+.|.++.++.++.. .|||+|.++-.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd--~~-~-f--~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~-~GAD~VlLi~a 151 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTD--TP-S-F--QGAPEFLTAARQACSLPALRKDFLFDPYQVYEARS-WGADCILIIMA 151 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECC--ST-T-T--CCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHH-TTCSEEEEETT
T ss_pred CCHHHHHHHHHHCCCCEEEEecc--cc-c-c--CCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHH-cCCCEEEEccc
Confidence 47889999999999999977521 11 1 1 13567888999999999999999999999999887 69999999988
Q ss_pred hhhC
Q 023070 170 LLEN 173 (287)
Q Consensus 170 ~l~n 173 (287)
++.+
T Consensus 152 ~L~~ 155 (272)
T 3tsm_A 152 SVDD 155 (272)
T ss_dssp TSCH
T ss_pred ccCH
Confidence 7743
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0021 Score=62.18 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=58.9
Q ss_pred HHHHHHHHcC---CCEEEEeccCCCCcC-CCC-ccccHHHHHHHHhh------CCCcEEEecCCCCHHHHHHHHHh----
Q 023070 94 KYAKMLEDAG---CSLLAVHGRTRDEKD-GKK-FRADWNAIKAVKNA------LRIPVLANGNVRHMEDVQKCLEE---- 158 (287)
Q Consensus 94 ~~a~~l~~~G---~~~I~vh~rt~~~~~-~~~-~~~~~~~i~~i~~~------~~ipVi~nGgI~s~~da~~~l~~---- 158 (287)
+-+....+.| +|+|.+......... ... .+..++.++++++. .++||++-||| +++++.++++.
T Consensus 119 eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~ 197 (540)
T 3nl6_A 119 EEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSS 197 (540)
T ss_dssp HHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCT
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhccc
Confidence 3355667889 999998654433221 111 12447777777665 48999999999 68999999972
Q ss_pred ---cCccEEEEehhhhhCccch
Q 023070 159 ---TGCEGVLSAESLLENPALF 177 (287)
Q Consensus 159 ---~gad~VmiGR~~l~nP~lf 177 (287)
.|+|+|.++++++..|+..
T Consensus 198 g~~~GadgvAVvsaI~~a~dp~ 219 (540)
T 3nl6_A 198 NGKRSLDGICVVSDIIASLDAA 219 (540)
T ss_dssp TSSCBCSCEEESHHHHTCTTHH
T ss_pred ccccCceEEEEeHHHhcCCCHH
Confidence 5899999999999766543
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=56.26 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=91.9
Q ss_pred CCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++++.|+ .++ .||..+.|..|.+ +++.-.+.++++++.. ++.+.+...-+|+..+++.
T Consensus 184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~ 248 (455)
T 3pfr_A 184 MDTQAVIELAAASKDRYGFKDFKLKGGVF---------------EGSKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQ 248 (455)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHCTTCCEEEECTTBSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhCCCCeEeecCCCCCCHHHHHH
Confidence 58999998877 455 5999999987632 2233345677777765 6788888888999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+++.+++. +.+| ++.-. +.| ++.++++++.+++||.+.=-+.+..++.++++...+|.+++
T Consensus 249 ~~~~L~~~-l~~i-------EeP~~---~~d~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~~ 313 (455)
T 3pfr_A 249 LCKGLNDV-LTYA-------EDPCI---GENGYSGREIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPLA 313 (455)
T ss_dssp HHTTCTTT-CSEE-------ESCBC---CBTTBCHHHHHHHHHHHHCCCEEESSSCCSHHHHHHHHHHTCCSEEBC
T ss_pred HHHhhccc-ceee-------ecCCC---hhhccchHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99988876 6555 22111 223 67889999999999988767889999999998777887754
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.01 Score=53.87 Aligned_cols=123 Identities=9% Similarity=-0.019 Sum_probs=87.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN 88 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~ 88 (287)
|+-..+.|.+++.+ .+.++.||..+.+..| ++ -.+.++++++.+ ++.+.+..+-+|+
T Consensus 121 ~~~~~~~g~~~e~~---~~~~~~G~~~~KiKvg------------------~~-d~~~v~avr~~~~~~~l~vDaN~~~~ 178 (342)
T 2okt_A 121 AYGATASGLSNKQL---ESLKATKPTRIKLKWT------------------PQ-IMHQIRVLRELDFHFQLVIDANESLD 178 (342)
T ss_dssp ECEEEESSCCHHHH---HHHHHHCCSEEEEECC------------------TT-HHHHHHHHTTSSSCCEEEEECTTCCC
T ss_pred eeeEEEecCCHHHH---HHHHHcCCcEEEEEeC------------------HH-HHHHHHHHHHhCCCCeEEEECCCCCC
Confidence 33444424444555 3345679999998764 23 357788888876 5667888788899
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+++ ++++.+++.++.+| ++.-. +.|++..++ +.+++||.+.=.+.+..++.++++...+|.|.+-
T Consensus 179 ~~~A-~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~--~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k 244 (342)
T 2okt_A 179 RQDF-TQLQLLAREQVLYI-------EEPFK---DISMLDEVA--DGTIPPIALDEKATSLLDIINLIELYNVKVVVLK 244 (342)
T ss_dssp GGGH-HHHHHHGGGCEEEE-------ECCCS---SGGGGGGSC--TTSSCCEEESTTCCCHHHHHHHHHHSCCCEEEEC
T ss_pred HHHH-HHHHHHhhCCCcEE-------ECCCC---CccHHHHHH--hcCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 9999 99999999887666 21110 234444444 4568999999999999999999988889999873
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.04 Score=49.20 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=83.8
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~l 99 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASIDL 99 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC-CCCHHHHHHH
Confidence 6777878777 5677999998872 223333344555566666666544 589988753 2456889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHHh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 158 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~~ 158 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+.
T Consensus 100 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 165 (301)
T 1xky_A 100 TKKATEVGVDAVMLVAPYYNK---PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEI 165 (301)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTS
T ss_pred HHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHcC
Confidence 999999999999776332211 0011224667788888899986 45 333578888777653
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.053 Score=48.16 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=82.5
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 87 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCG----------TTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTG-GNATHEAVHL 87 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 7777888777 5677999998872 223333334555566666665544 488887753 2456889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL 156 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l 156 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.
T Consensus 88 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (294)
T 2ehh_A 88 TAHAKEVGADGALVVVPYYNK---PTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLA 151 (294)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHH
Confidence 999999999999776332211 0111224667788888899976 45 3335788888776
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.046 Score=48.49 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=83.3
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~ 86 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVG----------TTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAG-SNCTEEAIE 86 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHH
Confidence 37778888777 5678999999872 223333344555566666665544 488888753 245678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL 156 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l 156 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.
T Consensus 87 la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 87 LSVFAEDVGADAVLSITPYYNK---PTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp HHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999776332211 0001224667788888899986 45 4335788888776
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.043 Score=49.10 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=82.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-~st~~ai~l 99 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKL 99 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCC-ccHHHHHHH
Confidence 7778888777 5677999998872 223333344555566666665544 4899887532 356889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCL 156 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l 156 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| .|+ -+++.+.++.
T Consensus 100 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 100 VKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 999999999999776432211 0011224667788888899986 44 343 5788888776
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.044 Score=48.82 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=82.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 94 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVG----------TTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTG-ANNTVEAIAL 94 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHHHHH
Confidence 6777888777 5678999999873 223333334555566666665544 489988742 2467899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 95 a~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 159 (297)
T 3flu_A 95 SQAAEKAGADYTLSVVPYYNK---PSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAE 159 (297)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHc
Confidence 999999999999776332211 0001224667888888899986 44 44456777776654
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.033 Score=49.67 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=83.7
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 18 iD~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~ 86 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVG----------TTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGS-NNPVEAVR 86 (297)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCC-CCHHHHHH
Confidence 37778888777 5678999998872 223333344555566666665544 4888887532 45678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 87 la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 87 YAQHAQQAGADAVLCVAGYYNR---PSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp HHHHHHHHTCSEEEECCCTTTC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999776332211 0001224667788888899986 45 43457888877764
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.028 Score=49.62 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=71.9
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC-EEEEe-ccCCCCcCCCCccccHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVH-GRTRDEKDGKKFRADWNAIK 130 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~-~I~vh-~rt~~~~~~~~~~~~~~~i~ 130 (287)
-||..+.+..++.++- ..+.||.+|.....+.++....++.+...|.. .+.+| |.+.-+.+ .....|+..+.
T Consensus 127 Igs~~~~n~~ll~~~a-----~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y-~~~~vdl~~i~ 200 (276)
T 1vs1_A 127 IGARNMQNFPLLREVG-----RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPS-TRFTLDVAAVA 200 (276)
T ss_dssp ECGGGTTCHHHHHHHH-----HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCS-SSSBCBHHHHH
T ss_pred ECcccccCHHHHHHHH-----ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCc-CcchhCHHHHH
Confidence 3455555555544443 24899999977666778888888888899984 44556 44221111 12257889899
Q ss_pred HHHhhCCCcEEE-ec---CCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLA-NG---NVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~-nG---gI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++..++||++ +. |.++ ..-+...+. .||||+||=+-+
T Consensus 201 ~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva-~Ga~Gl~IE~H~ 245 (276)
T 1vs1_A 201 VLKEATHLPVIVDPSHPAGRRSLVPALAKAGLA-AGADGLIVEVHP 245 (276)
T ss_dssp HHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHH-TTCSEEEEEBCS
T ss_pred HHHHHhCCCEEEeCCCCCCccchHHHHHHHHHH-cCCCEEEEEecC
Confidence 999887899975 22 4332 344445555 699999997654
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.026 Score=51.92 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=65.0
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC----------------------cC----------------
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----------------------KD---------------- 118 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~----------------------~~---------------- 118 (287)
-|.++.+-.+.+.+...++++++++.|++.|.|+--+... ..
T Consensus 123 ~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~ 202 (370)
T 1gox_A 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSS 202 (370)
T ss_dssp CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHH
T ss_pred CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHH
Confidence 5666766555566667888999999999999886322100 00
Q ss_pred ----CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 119 ----GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 119 ----~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
......+|+.++++++.+++||+. +++.+++++..+.+ .|+|+|.++
T Consensus 203 ~v~~~~~~~~~~~~i~~l~~~~~~pv~v-K~~~~~e~a~~a~~-~Gad~I~vs 253 (370)
T 1gox_A 203 YVAGQIDRSLSWKDVAWLQTITSLPILV-KGVITAEDARLAVQ-HGAAGIIVS 253 (370)
T ss_dssp HHHHTBCTTCCHHHHHHHHHHCCSCEEE-ECCCSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHhhcCccchHHHHHHHHHHhCCCEEE-EecCCHHHHHHHHH-cCCCEEEEC
Confidence 001124688899999999999996 77899999998888 599999985
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.045 Score=49.19 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=83.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~st~~ai~l 109 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVG----------TTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAG-SNSTSEAVEL 109 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHHH
Confidence 6777888777 5678999998772 223333334555566666665544 589988743 2467889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 110 a~~A~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 110 AKHAEKAGADAVLVVTPYYNR---PNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence 999999999999776432211 0001234667888888899986 44 44457788877776
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.045 Score=49.80 Aligned_cols=125 Identities=16% Similarity=0.044 Sum_probs=82.9
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~ 117 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLG----------SGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG-TNARETIE 117 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHH
Confidence 36677877777 5677999998872 223333344555566666666544 5899887532 45688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL 156 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l 156 (287)
+++.+++.|+|++.+..-.... .+...-+++++.|.+++++||+ +| |---+++.+.++.
T Consensus 118 la~~A~~~Gadavlv~~P~Y~~---~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 118 LSQHAQQAGADGIVVINPYYWK---VSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHHHHHHTCSEEEEECCSSSC---CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 9999999999999776332211 0011224667788888899976 44 3335788887776
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.072 Score=45.63 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC-C----Chhh
Q 023070 18 NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-P----NLQD 91 (287)
Q Consensus 18 ~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g-~----~~~~ 91 (287)
++++.+.+.|+.. +.|+.+|.++ . .+-++++++.+++||.-..+.. . -...
T Consensus 33 ~~~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~ 89 (229)
T 3q58_A 33 DKPEIVAAMAQAAASAGAVAVRIE-------------------G----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITP 89 (229)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC
T ss_pred CCcchHHHHHHHHHHCCCcEEEEC-------------------C----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCc
Confidence 3488899988865 4589999874 1 3457888999999986433321 0 1112
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+-++.+.++|+|.|.+-...... + ..--++++.+++ .++++++ ++.|.+++.++.+ .|+|.|.+
T Consensus 90 ~~~~i~~~~~aGad~I~l~~~~~~~----p-~~l~~~i~~~~~-~g~~v~~--~v~t~eea~~a~~-~Gad~Ig~ 155 (229)
T 3q58_A 90 YLQDVDALAQAGADIIAFDASFRSR----P-VDIDSLLTRIRL-HGLLAMA--DCSTVNEGISCHQ-KGIEFIGT 155 (229)
T ss_dssp SHHHHHHHHHHTCSEEEEECCSSCC----S-SCHHHHHHHHHH-TTCEEEE--ECSSHHHHHHHHH-TTCSEEEC
T ss_pred cHHHHHHHHHcCCCEEEECccccCC----h-HHHHHHHHHHHH-CCCEEEE--ecCCHHHHHHHHh-CCCCEEEe
Confidence 3344667789999999775432210 0 112356666665 4666665 6899999999887 59999964
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.057 Score=48.14 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=87.2
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg-~~~t~~ai 93 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVG----------TTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG-SNATHEAV 93 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC-CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCC-CCCHHHHH
Confidence 37778888777 5678999998872 223333334555566666665544 478888742 24678999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHHh-cCccEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE-TGCEGV 164 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~~-~gad~V 164 (287)
++++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+. ..+-||
T Consensus 94 ~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgi 168 (301)
T 3m5v_A 94 GLAKFAKEHGADGILSVAPYYNK---PTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGV 168 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEE
Confidence 99999999999999876432211 0001234677888888899986 44 445678888877765 344333
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.035 Score=50.34 Aligned_cols=131 Identities=17% Similarity=0.085 Sum_probs=85.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~l 121 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILG----------STGIYMYLTREERRRAIEAAATILRGRRTLMAGIGA-LRTDEAVAL 121 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHH
Confidence 6677777777 4567999998872 233333345555566777666554 4899887643 456889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHHHhcCccE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCLEETGCEG 163 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l~~~gad~ 163 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| .|+ -+++.+.++.+...+-|
T Consensus 122 a~~A~~~Gadavlv~~P~Y~~---~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvg 192 (332)
T 2r8w_A 122 AKDAEAAGADALLLAPVSYTP---LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRA 192 (332)
T ss_dssp HHHHHHHTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEE
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEE
Confidence 999999999999775332211 0001224667888888899986 45 243 57888887765333333
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.029 Score=50.00 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=89.3
Q ss_pred CCCEEEEec---CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccc---ccccCChHHHHHHHHHHhhc-c--CC
Q 023070 8 DRPLFVQFC---ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYG---AFLMDNLPLVKSLVEKLALN-L--NV 77 (287)
Q Consensus 8 ~~p~~~Qi~---g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G---~~l~~~~~~~~~iv~~v~~~-~--~~ 77 (287)
+.|+++-+= | +++...+.++ +++.|+.+|.|--+... .+.++.| ..|. ..+...+-|++++++ . ++
T Consensus 79 ~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iED~~~~--k~cgH~gg~~k~l~-p~~e~~~rI~Aa~~a~~~~~~ 154 (295)
T 1s2w_A 79 DVPILLDADTGYG-NFNNARRLVRKLEDRGVAGACLEDKLFP--KTNSLHDGRAQPLA-DIEEFALKIKACKDSQTDPDF 154 (295)
T ss_dssp SSCEEEECCSSCS-SHHHHHHHHHHHHHTTCCEEEEECBCC----------CTTCCBC-CHHHHHHHHHHHHHHCSSTTC
T ss_pred CCCEEecCCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCC--ccccccCCCCCccc-CHHHHHHHHHHHHHhcccCCc
Confidence 467776652 4 5677777776 55679999999865421 1223333 2333 333334444444433 2 34
Q ss_pred cEEEEecC---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecC---CCCH
Q 023070 78 PVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGN---VRHM 149 (287)
Q Consensus 78 pv~vKiR~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGg---I~s~ 149 (287)
-|..|.-. +...+++++=++.++++|+|.|.+++.. .+.+.++++.+.++ +|+++|-+ -.+
T Consensus 155 ~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----------~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~- 223 (295)
T 1s2w_A 155 CIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK----------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTP- 223 (295)
T ss_dssp EEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS----------SSSHHHHHHHHHHTTCSCEEECCSTTTTSC-
T ss_pred EEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHcCCCCCEEEeCCCCCCCC-
Confidence 45555432 2235788888999999999999998532 23466788888876 99999843 333
Q ss_pred HHHHHHHHhcCccEEEEehhhh
Q 023070 150 EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l 171 (287)
+.++- +.|+..|.+|-.++
T Consensus 224 --~~eL~-~lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 224 --TDHFR-DMGVSMVIWANHNL 242 (295)
T ss_dssp --HHHHH-HHTCCEEEECSHHH
T ss_pred --HHHHH-HcCCcEEEEChHHH
Confidence 33444 46999999986654
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.015 Score=51.01 Aligned_cols=109 Identities=19% Similarity=0.292 Sum_probs=69.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-ecc--CCCCcCCCCccccHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGR--TRDEKDGKKFRADWNAIK 130 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~r--t~~~~~~~~~~~~~~~i~ 130 (287)
|+..+.+..++.+ +.+ .+.||.+|.....+.++....++.+...|...+++ |-. +.. .+ .....|+..+.
T Consensus 113 ga~~~~n~~ll~~----~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~-~y-~~~~v~L~ai~ 185 (262)
T 1zco_A 113 GARNSQNFELLKE----VGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFE-TA-TRFTLDISAVP 185 (262)
T ss_dssp CGGGTTCHHHHHH----HTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSC-CS-SSSBCCTTHHH
T ss_pred CcccccCHHHHHH----HHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-Cc-ChhhcCHHHHH
Confidence 3444444444333 333 68999999776667888888899999999865555 522 222 12 12246778889
Q ss_pred HHHhhCCCcEEEe----cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~n----GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++..++||++. +|.+. +.-+..... .|++|+||=+-+
T Consensus 186 ~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva-~Ga~Gl~iE~H~ 230 (262)
T 1zco_A 186 VVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYA-IGADGIMVEVHP 230 (262)
T ss_dssp HHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHH-TTCSEEEEEBCS
T ss_pred HHHhhhCCCEEEEcCCCCCccchHHHHHHHHHH-cCCCEEEEEecC
Confidence 9998888998653 23322 122344554 699999997654
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.048 Score=49.03 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=81.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. ..+..+++++
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg-~~~t~~ai~l 111 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLG----------STGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVS-DLTTAKTVRR 111 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecC-CCCHHHHHHH
Confidence 6677777777 5678999998872 223333334555566666665544 589988753 2466889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKC 155 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~ 155 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++
T Consensus 112 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 112 AQFAESLGAEAVMVLPISYWK---LNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HHHHHHTTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHH
Confidence 999999999999886432211 0011234677888888899986 44 434567777777
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0042 Score=54.85 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+++|.|..-.. + + .-.++.++.+++.+++||+..+.|.++.++.++.. .|||+|.++-+
T Consensus 72 ~~p~~~A~~y~~~GA~~isvltd~~---~-f--~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~-~GAD~VlLi~a 144 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVTEQR---R-F--QGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARA-HGADMLLLIVA 144 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEECCGG---G-H--HHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEEEGG
T ss_pred CCHHHHHHHHHHcCCCEEEEecChh---h-c--CCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHH-cCCCEEEEecc
Confidence 4678999999999999998862111 0 1 12357888899999999999999999989999987 69999999988
Q ss_pred hhhCcc
Q 023070 170 LLENPA 175 (287)
Q Consensus 170 ~l~nP~ 175 (287)
.+.+..
T Consensus 145 ~l~~~~ 150 (272)
T 3qja_A 145 ALEQSV 150 (272)
T ss_dssp GSCHHH
T ss_pred cCCHHH
Confidence 776544
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.027 Score=50.48 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=86.6
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccc-cccCChHHHHHHHHHHhhc---cCCcE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALN---LNVPV 79 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~-~l~~~~~~~~~iv~~v~~~---~~~pv 79 (287)
..|+++-+ +| +|+...+.++. .+.|+.+|.|--.... .+.++.++ .|....+.+.+| ++.+++ .+.++
T Consensus 88 ~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~~--k~cgh~~gk~l~~~~e~~~rI-~Aa~~A~~~~~~d~ 163 (307)
T 3lye_A 88 GPPLIADMDTGYG-GPIMVARTVEHYIRSGVAGAHLEDQILT--KRCGHLSGKKVVSRDEYLVRI-RAAVATKRRLRSDF 163 (307)
T ss_dssp SCCEEEECTTCSS-SHHHHHHHHHHHHHTTCCEEEECCBCCC--C--------CBCCHHHHHHHH-HHHHHHHHHTTCCC
T ss_pred CCcEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEcCCCCC--cccCCCCCCeecCHHHHHHHH-HHHHHHHHhcCCCe
Confidence 46887655 34 68888888874 5679999999744321 11222233 344333444444 333332 24455
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEe---cC---CCC
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN---GN---VRH 148 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~n---Gg---I~s 148 (287)
.|--|.. ...+++++=++.+.++|+|.|-+++. .+.+.++++.+.++ +||.+| || ..+
T Consensus 164 ~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~-----------~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t 232 (307)
T 3lye_A 164 VLIARTDALQSLGYEECIERLRAARDEGADVGLLEGF-----------RSKEQAAAAVAALAPWPLLLNSVENGHSPLIT 232 (307)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC-----------SCHHHHHHHHHHHTTSCBEEEEETTSSSCCCC
T ss_pred EEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC-----------CCHHHHHHHHHHccCCceeEEeecCCCCCCCC
Confidence 5544442 24568888889999999999999864 23466778887764 888765 33 234
Q ss_pred HHHHHHHHHhcCccEEEEehhhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l 171 (287)
.++ +- +.|+..|+.+-.++
T Consensus 233 ~~e---L~-~lGv~~v~~~~~~~ 251 (307)
T 3lye_A 233 VEE---AK-AMGFRIMIFSFATL 251 (307)
T ss_dssp HHH---HH-HHTCSEEEEETTTH
T ss_pred HHH---HH-HcCCeEEEEChHHH
Confidence 333 33 46999998876554
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.014 Score=53.21 Aligned_cols=110 Identities=18% Similarity=0.302 Sum_probs=71.2
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKA 131 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~ 131 (287)
||..+.+.+++.++ . ..+.||.+|.....+.++....++.+...|..-+++ +|.+.-+.+. ....|+..+..
T Consensus 196 gAr~~~n~~LL~~v----a-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~-~~~vdl~ai~~ 269 (350)
T 1vr6_A 196 GARNAQNFRLLSKA----G-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKAT-RNTLDISAVPI 269 (350)
T ss_dssp CGGGTTCHHHHHHH----H-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSS-SSBCCTTHHHH
T ss_pred CcccccCHHHHHHH----H-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcC-hhhhhHHHHHH
Confidence 44445555544433 3 358999999776667788888888889999866655 3332111111 23578888899
Q ss_pred HHhhCCCcEEE-ec---CCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 132 VKNALRIPVLA-NG---NVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 132 i~~~~~ipVi~-nG---gI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
+++..++||++ +. |-++ ..-+..++. .||||+||=+-+
T Consensus 270 lk~~~~lpVi~dssHs~G~~~~v~~~a~AAvA-~GA~Gl~IE~H~ 313 (350)
T 1vr6_A 270 IRKESHLPILVDPSHSGGRRDLVIPLSRAAIA-VGAHGIIVEVHP 313 (350)
T ss_dssp HHHHBSSCEEECHHHHHCSGGGHHHHHHHHHH-HTCSEEEEEBCS
T ss_pred HHHhhCCCEEEeCCCCCcccchHHHHHHHHHH-hCCCEEEEEecC
Confidence 99888899976 22 4332 344445555 599999997654
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.025 Score=50.41 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=72.9
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~ 130 (287)
.-||..+.+.+++.+ +. ..+.||.+|....-+.++....++.+...|...+++.-|... +.++ ...|+..+.
T Consensus 113 kIgA~~~~n~~Ll~~----~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~--~~y~~~~~dl~~i~ 185 (292)
T 1o60_A 113 QLPAFLARQTDLVEA----MA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN--FGYDNLIVDMLGFS 185 (292)
T ss_dssp EECGGGTTCHHHHHH----HH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHH
T ss_pred EECcccccCHHHHHH----HH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHH
Confidence 346777777775444 43 468999999776557788888888999999866655434322 1221 125888888
Q ss_pred HHHhhC-CCcEEEe---------------cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNAL-RIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~-~ipVi~n---------------GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++.. ++||++. +|.+. ..-+..+.. .|+||+||=+-+
T Consensus 186 ~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva-~Ga~Gl~IE~H~ 242 (292)
T 1o60_A 186 VMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLA-VGIAGLFLEAHP 242 (292)
T ss_dssp HHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHH-HCCSEEEEEEES
T ss_pred HHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHH-cCCCEEEEEecC
Confidence 898887 8999982 23211 123334454 699999997654
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.053 Score=48.16 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=81.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 89 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNG----------TTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTG-TNDTEKSIQA 89 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCC-cccHHHHHHH
Confidence 6677777777 5678999998872 223333334444456666665544 589988753 2466889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 90 a~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 90 SIQAKALGADAIMLITPYYNK---TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 999999999999776332211 0001224667778887889976 44 44467777777665
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.05 Score=48.89 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=82.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~eai~l 110 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVG----------TTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGA-NSTREAVAL 110 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHH
Confidence 6677777777 4567999998872 223333334555566666665544 4899887432 456889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 111 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 175 (314)
T 3qze_A 111 TEAAKSGGADACLLVTPYYNK---PTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK 175 (314)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 999999999999776432211 0001224677888888899986 44 44567788777764
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=53.63 Aligned_cols=97 Identities=18% Similarity=0.289 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+++...+.++.+++.-.++|.+-+ +.. .+..+.++.+.++|++.|.++.-. +. .....+.++++++.. ++
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~v--g~~-~~~~~~~~~lieaGvd~I~idta~-----G~-~~~~~~~I~~ik~~~p~v 150 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAAV--GAA-PGNEERVKALVEAGVDVLLIDSSH-----GH-SEGVLQRIRETRAAYPHL 150 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEEC--CSC-TTCHHHHHHHHHTTCSEEEEECSC-----TT-SHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCceeEEEEe--ccC-hhHHHHHHHHHhCCCCEEEEeCCC-----CC-CHHHHHHHHHHHHhcCCC
Confidence 577778888888765344444443 222 234567888999999999886211 11 022346788888876 78
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
||++ |.+.|++++.++.+ .|||+|.+|
T Consensus 151 ~Vi~-G~v~t~e~A~~a~~-aGAD~I~vG 177 (366)
T 4fo4_A 151 EIIG-GNVATAEGARALIE-AGVSAVKVG 177 (366)
T ss_dssp EEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred ceEe-eeeCCHHHHHHHHH-cCCCEEEEe
Confidence 8876 77999999999887 599999995
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.045 Score=49.54 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=77.0
Q ss_pred HHcCCCCEEEEeccCChhhhhcCccccccc-----CChHHHHHHHHHHhhccCCcEEEEe--cC---CCC---------h
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--RV---FPN---------L 89 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~-----~~~~~~~~iv~~v~~~~~~pv~vKi--R~---g~~---------~ 89 (287)
+++.|+|+|-+.+- ||+.=. .....+.++.++.+ ..++|+.+=+ +. +.. .
T Consensus 119 a~~~GADAVk~lv~----------~g~d~~~e~~~~q~~~l~rv~~ec~-~~GiPlllEil~y~~~~~~~~~~~~a~~~p 187 (332)
T 3iv3_A 119 LKEAGADAVKFLLY----------YDVDGDPQVNVQKQAYIERIGSECQ-AEDIPFFLEILTYDETISNNSSVEFAKVKV 187 (332)
T ss_dssp HHHTTCSEEEEEEE----------ECTTSCHHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEECBTTBSCTTSHHHHTTHH
T ss_pred HHHcCCCEEEEEEE----------cCCCchHHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCCCCCcchhhhccCH
Confidence 45679999888752 333100 01223444444432 3489988744 22 111 1
Q ss_pred hhHHHHHHHH--HHcCCCEEEEe-ccCCC---Cc----CCCCccccHHHHHHHHhhCCCcEE-EecCCCCHHHHHHHHHh
Q 023070 90 QDTIKYAKML--EDAGCSLLAVH-GRTRD---EK----DGKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 90 ~~~~~~a~~l--~~~G~~~I~vh-~rt~~---~~----~~~~~~~~~~~i~~i~~~~~ipVi-~nGgI~s~~da~~~l~~ 158 (287)
+.....++.+ .+.|+|.+-+- ..... +. ..|+.....+.++++.+.+++|+| .+||+ +.++..+.++.
T Consensus 188 ~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~ 266 (332)
T 3iv3_A 188 HKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVF 266 (332)
T ss_dssp HHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHH
Confidence 1245667777 57799999774 11110 10 011111122457777788899965 79998 56666665532
Q ss_pred ---cCc--cEEEEehhhhhCc
Q 023070 159 ---TGC--EGVLSAESLLENP 174 (287)
Q Consensus 159 ---~ga--d~VmiGR~~l~nP 174 (287)
.|+ .||.+||....+.
T Consensus 267 A~~aGa~f~Gv~~GRnvwq~~ 287 (332)
T 3iv3_A 267 AHKAGAKFNGVLCGRATWAGS 287 (332)
T ss_dssp HHHHTCCCCEEEECHHHHTTH
T ss_pred HHHcCCCcceEEeeHHHHHhh
Confidence 588 9999999987763
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.052 Score=48.48 Aligned_cols=132 Identities=11% Similarity=0.172 Sum_probs=85.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~l 98 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAESQQL 98 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHH
Confidence 6677777777 5678999999872 223333344555566666666544 5889887532 356789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEE-Ee----cCC-CCHHHHHHHHHhcCccEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVL-AN----GNV-RHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi-~n----GgI-~s~~da~~~l~~~gad~V 164 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.++++ +||+ +| .|+ -+++.+.++.+...+-||
T Consensus 99 a~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi 171 (303)
T 2wkj_A 99 AASAKRYGFDAVSAVTPFYYP---FSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGAL 171 (303)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHHhCCCCEEEecCCCCCC---CCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 999999999999776332211 000122466778888888 9986 45 344 578888877653333333
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.031 Score=52.95 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=89.0
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
+|++.++.++ ... .||+.+.|..|.+ +++.-.+.++++++.+ ++++.+...-+|+.++++++
T Consensus 202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~---------------~~~~di~~v~avrea~pd~~L~vDaN~~wt~~~Ai~~ 266 (464)
T 4g8t_A 202 TPESVVRLAEAAYEKYGFNDFKLKGGVL---------------DGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKI 266 (464)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHhhCCCceEEEECCCccCHHHHHHH
Confidence 5666666554 343 4999999986521 3344456677777766 67888888889999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++. +.++ ++.-. .......+.++++++.+++||.+.-.+.+..++.++++...+|.++.
T Consensus 267 ~~~le~~-l~wi-------EeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~ 330 (464)
T 4g8t_A 267 GKQLKGV-LAYA-------EDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLA 330 (464)
T ss_dssp HHHTTTT-CSCE-------ESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBC
T ss_pred HHHhhhc-ccee-------ecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEec
Confidence 9998765 5544 11100 00012357788999999999999999999999999999877885543
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.16 Score=44.81 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCC-EEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRP-LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p-~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
.+| +.|.|.+.+.+++...++.+. .|+|.||+=.-+ +.. ..+.+.+.+.+..+++.. ++|+.+=+|
T Consensus 38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~---------l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~R 106 (276)
T 3o1n_A 38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDH---------FAN--VTTAESVLEAAGAIREIITDKPLLFTFR 106 (276)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGG---------CTT--TTCHHHHHHHHHHHHHHCCSSCEEEECC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEecc---------ccc--cCcHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 455 569999999999999888776 699999996421 111 123477888999998887 799999888
Q ss_pred C----CC---ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHH---hhCCCcEEEec----CCCCH
Q 023070 85 V----FP---NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLANG----NVRHM 149 (287)
Q Consensus 85 ~----g~---~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~---~~~~ipVi~nG----gI~s~ 149 (287)
. |. +.++..++.+.+.+.| +++|.|--.. +-+.++++. ...++.||++= +--+.
T Consensus 107 t~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~-----------~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~ 175 (276)
T 3o1n_A 107 SAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFT-----------GDDEVKATVGYAHQHNVAVIMSNHDFHKTPAA 175 (276)
T ss_dssp BGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGG-----------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCH
T ss_pred EhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcC-----------CHHHHHHHHHHHHhCCCEEEEEeecCCCCcCH
Confidence 7 21 3456678888888899 9999996321 113344443 23467888763 33444
Q ss_pred HHHHHHHH---hcCccEEEEe
Q 023070 150 EDVQKCLE---ETGCEGVLSA 167 (287)
Q Consensus 150 ~da~~~l~---~~gad~VmiG 167 (287)
+++...++ ..|||.|=++
T Consensus 176 ~el~~~~~~~~~~GaDIvKia 196 (276)
T 3o1n_A 176 EEIVQRLRKMQELGADIPKIA 196 (276)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 55554443 3588877554
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0062 Score=54.11 Aligned_cols=94 Identities=13% Similarity=0.181 Sum_probs=60.3
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHh-hCCCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKN-ALRIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~-~~~ipV 140 (287)
.+.++++++... .+|.|-++ + .+-++.+.++|+|+|-++..+ +.++ +.++.++. ..++|+
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV~---t----leea~eA~~aGaD~I~LDn~~---------~e~l~~av~~l~~~~~~v~i 243 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEVE---N----LEDALRAVEAGADIVMLDNLS---------PEEVKDISRRIKDINPNVIV 243 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESCC---------HHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHhCCCCceEEEEeC---C----HHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhhccCCCceE
Confidence 445566665542 45555432 2 234555667999999998532 1222 22333332 126899
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
.++||| +++.+.++.+ +|+|++.+|.....-|++
T Consensus 244 eASGGI-t~eni~~~a~-tGVD~IsvGslt~sa~~~ 277 (285)
T 1o4u_A 244 EVSGGI-TEENVSLYDF-ETVDVISSSRLTLQEVFV 277 (285)
T ss_dssp EEEECC-CTTTGGGGCC-TTCCEEEEGGGTSSCCCC
T ss_pred EEECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCCCc
Confidence 999999 5688887776 799999999987766653
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.064 Score=47.92 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=82.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..++++
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~st~~ai~ 102 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAG----------TTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVG-TNNTRTSVE 102 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCC-CCCHHHHHH
Confidence 36777877777 5677999998872 223333334455566666665544 488888753 246688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| -|+ -+++.+.++.+
T Consensus 103 la~~A~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTPYYSK---PSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLSE 168 (304)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence 9999999999999775322111 0001224667788888899976 45 243 57787777654
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.067 Score=44.64 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+.++..+.++.+..|+|.|++.+ |.. .. +| .++++++++. .++||.+-.-.... ...++
T Consensus 10 ~~~~~~~~~~~~~~~~~diie~G~--p~~--~~--~g----------~~~i~~ir~~~~~~~i~~~~~~~~~---~~~~~ 70 (211)
T 3f4w_A 10 LTLPEAMVFMDKVVDDVDIIEVGT--PFL--IR--EG----------VNAIKAIKEKYPHKEVLADAKIMDG---GHFES 70 (211)
T ss_dssp CCHHHHHHHHHHHGGGCSEEEECH--HHH--HH--HT----------THHHHHHHHHCTTSEEEEEEEECSC---HHHHH
T ss_pred CCHHHHHHHHHHhhcCccEEEeCc--HHH--Hh--cc----------HHHHHHHHHhCCCCEEEEEEEeccc---hHHHH
Confidence 466777777765555788888875 442 11 12 3567777776 47887543222211 12358
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhhCCCcEEEe-cCCCCH-HHHHHHHHhcCccEEEEeh
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLAN-GNVRHM-EDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~~~ipVi~n-GgI~s~-~da~~~l~~~gad~VmiGR 168 (287)
+.+.++|++++++|.... ..++ +.++.+++ .+++++.. =+..++ +.+..+.+ .|+|.|.+..
T Consensus 71 ~~~~~~Gad~v~v~~~~~--------~~~~~~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~~-~g~d~i~v~~ 135 (211)
T 3f4w_A 71 QLLFDAGADYVTVLGVTD--------VLTIQSCIRAAKE-AGKQVVVDMICVDDLPARVRLLEE-AGADMLAVHT 135 (211)
T ss_dssp HHHHHTTCSEEEEETTSC--------HHHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHH-HTCCEEEEEC
T ss_pred HHHHhcCCCEEEEeCCCC--------hhHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHH-cCCCEEEEcC
Confidence 888999999999996531 1222 33444444 36666542 335565 44666666 6999987753
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.019 Score=50.57 Aligned_cols=93 Identities=13% Similarity=0.191 Sum_probs=60.7
Q ss_pred HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHH
Q 023070 21 EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l 99 (287)
+...+-|+ .++.|+|.||||++++ ....++.+..+++++++.+++|+++... + .+.++..
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s~------------~~eE~~rv~~vi~~l~~~~~~pisIDT~------~-~~v~~aa 94 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGPT------------ADDPVRVMEWLVKTIQEVVDLPCCLDST------N-PDAIEAG 94 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSC------------SSCHHHHHHHHHHHHHHHCCCCEEEECS------C-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcC------------chhHHHHHHHHHHHHHHhCCCeEEEeCC------C-HHHHHHH
Confidence 33444333 6678999999997652 2356888999999999888999999832 1 2345555
Q ss_pred HHc--CCCEEE-EeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 100 EDA--GCSLLA-VHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 100 ~~~--G~~~I~-vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
.++ |++.|- |++.. .+++.+..+....+.||++
T Consensus 95 l~a~~Ga~iINdvs~~~----------d~~~~~~~~~a~~~~~vv~ 130 (271)
T 2yci_X 95 LKVHRGHAMINSTSADQ----------WKMDIFFPMAKKYEAAIIG 130 (271)
T ss_dssp HHHCCSCCEEEEECSCH----------HHHHHHHHHHHHHTCEEEE
T ss_pred HHhCCCCCEEEECCCCc----------cccHHHHHHHHHcCCCEEE
Confidence 556 888873 65431 1133344444455778876
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.014 Score=50.99 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=87.3
Q ss_pred CCEEEEe---cCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcEEEE
Q 023070 9 RPLFVQF---CANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPVSCK 82 (287)
Q Consensus 9 ~p~~~Qi---~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv~vK 82 (287)
.|+++-+ +|+++ +..+.++++.|+++|.|--+...+ |..+ -..+...+-|++++++. ++|+.|-
T Consensus 81 ~pviaD~~~Gyg~~~--~~~~~~l~~aGa~gv~iEd~~~~~-------~k~l-~~~~e~~~~I~a~~~a~~~~g~~~~v~ 150 (255)
T 2qiw_A 81 IPVSVDVESGYGLSP--ADLIAQILEAGAVGINVEDVVHSE-------GKRV-REAQEHADYIAAARQAADVAGVDVVIN 150 (255)
T ss_dssp SCEEEECTTCTTCCH--HHHHHHHHHTTCCEEEECSEEGGG-------TTEE-CCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCEEeccCCCcCcHH--HHHHHHHHHcCCcEEEECCCCCCC-------CCcc-cCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 5666544 34556 444555677899999997443110 2222 24455566666665542 5775544
Q ss_pred ecCC-----CC-----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe--cCCCCH-
Q 023070 83 IRVF-----PN-----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN--GNVRHM- 149 (287)
Q Consensus 83 iR~g-----~~-----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n--GgI~s~- 149 (287)
-|.. .+ .+++++=++.++++|++.|.+++. .+.+.++++.+.+++|+..+ ++-.++
T Consensus 151 aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~n~~~~~~~~~p~ 219 (255)
T 2qiw_A 151 GRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL-----------STAEQVERLVDAVSVPVNITAHPVDGHGA 219 (255)
T ss_dssp EEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC-----------CSHHHHHHHHTTCSSCBEEECBTTTBBTT
T ss_pred EEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC-----------CCHHHHHHHHHhCCCCEEEEecCCCCCCC
Confidence 4442 22 467788889999999999999754 33467889999999998766 333111
Q ss_pred HHHHHHHHhcCccEEEEehh
Q 023070 150 EDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~ 169 (287)
-++.++- +.|+..|..|-.
T Consensus 220 ~~~~eL~-~lGv~~v~~~~~ 238 (255)
T 2qiw_A 220 GDLATLA-GLGVRRVTFGPL 238 (255)
T ss_dssp BCHHHHH-HTTCCEEECTTH
T ss_pred CCHHHHH-HcCCCEEEEHHH
Confidence 1233333 469999998865
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.025 Score=48.69 Aligned_cols=99 Identities=22% Similarity=0.255 Sum_probs=73.9
Q ss_pred HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC
Q 023070 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg 145 (287)
++++.+.+. +|..=+|. .+.+++.++++.+.+.|++.|-|+-++. ...+.|+++++.++-.+++.|.
T Consensus 26 ~~~~~l~~~---~vv~Vir~-~~~~~a~~~a~al~~gGi~~iEvt~~t~---------~a~e~I~~l~~~~~~~~iGaGT 92 (232)
T 4e38_A 26 TINNQLKAL---KVIPVIAI-DNAEDIIPLGKVLAENGLPAAEITFRSD---------AAVEAIRLLRQAQPEMLIGAGT 92 (232)
T ss_dssp HHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCCEEeECC
Confidence 345555443 33333333 4568899999999999999999986643 2358899999887667899999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|.+.++++.+++ .|||+|+..- .+|.+.+..+
T Consensus 93 Vlt~~~a~~Ai~-AGA~fIvsP~---~~~~vi~~~~ 124 (232)
T 4e38_A 93 ILNGEQALAAKE-AGATFVVSPG---FNPNTVRACQ 124 (232)
T ss_dssp CCSHHHHHHHHH-HTCSEEECSS---CCHHHHHHHH
T ss_pred cCCHHHHHHHHH-cCCCEEEeCC---CCHHHHHHHH
Confidence 999999999998 5999998753 4677665443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.065 Score=47.59 Aligned_cols=127 Identities=11% Similarity=0.075 Sum_probs=83.9
Q ss_pred CCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-++ .++ .|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai 89 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 89 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHH
Confidence 36777888777 567 8999998872 223333345555566666666544 4888877532 3568899
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHHHh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCLEE 158 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l~~ 158 (287)
++++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| .|+ -+++.+.++.+.
T Consensus 90 ~la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 157 (293)
T 1f6k_A 90 ELGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKN 157 (293)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTS
T ss_pred HHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhcC
Confidence 99999999999999776332211 0001224667788888889976 45 344 578888877653
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.019 Score=50.82 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=71.2
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~ 130 (287)
..||..+++.+++.++ . ..+.||.+|....-+.++....++.+...|...+++.-|+.. +.+. ...|+..+.
T Consensus 110 kIga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~--~~~~~~~~dl~~i~ 182 (280)
T 2qkf_A 110 QLPAFLARQTDLVVAM----A-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS--FGYDNLVVDMLGFG 182 (280)
T ss_dssp EECGGGTTBHHHHHHH----H-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHH
T ss_pred EECcccccCHHHHHHH----H-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHH
Confidence 4567777777755443 2 468999999776557788888888899999866655434332 2221 125888888
Q ss_pred HHHhhC-CCcEEEe-----------cCCCC------HHHHHHHHHhcCccEEEEehhhh
Q 023070 131 AVKNAL-RIPVLAN-----------GNVRH------MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 131 ~i~~~~-~ipVi~n-----------GgI~s------~~da~~~l~~~gad~VmiGR~~l 171 (287)
.+++.. ++||++. |+-.. ..-+..+.. .|+||+||=+-+-
T Consensus 183 ~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava-~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 183 VMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMA-TRLAGLFLESHPD 240 (280)
T ss_dssp HHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHT-TCCSEEEEEC---
T ss_pred HHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHH-cCCCEEEEeecCC
Confidence 998887 8999983 12111 122334444 6999999976543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.008 Score=55.32 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=58.3
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccc---cH-HHHHHHHhhCCCcEEEecCC---CC
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---DW-NAIKAVKNALRIPVLANGNV---RH 148 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~---~~-~~i~~i~~~~~ipVi~nGgI---~s 148 (287)
+.++..-+...... .+..+.++..|++++.+|-....+.....+.. +| +.++.+++.+++||++=| | .+
T Consensus 144 ~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s 219 (365)
T 3sr7_A 144 HLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGMD 219 (365)
T ss_dssp -CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCC
T ss_pred CCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCC
Confidence 55665554443332 25566777899999999854321111111222 34 789999999999999874 6 79
Q ss_pred HHHHHHHHHhcCccEEEEe
Q 023070 149 MEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiG 167 (287)
++++..+.+ .|+|+|.++
T Consensus 220 ~e~A~~l~~-aGad~I~V~ 237 (365)
T 3sr7_A 220 VKTIQTAID-LGVKTVDIS 237 (365)
T ss_dssp HHHHHHHHH-HTCCEEECC
T ss_pred HHHHHHHHH-cCCCEEEEe
Confidence 999998887 699999873
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.03 Score=49.88 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=74.3
Q ss_pred HcCCCCEEE----EeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE--e--cCC------CChhhHHHH
Q 023070 30 VEPYCDYVD----INLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK--I--RVF------PNLQDTIKY 95 (287)
Q Consensus 30 ~~~g~d~Id----iN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK--i--R~g------~~~~~~~~~ 95 (287)
+..|+|+|- ||.|.|... ...+.+.+++++.. ..++|+.+= + |.| .+.+.....
T Consensus 138 vrlGADaV~~l~~i~~Gs~~e~-----------~~l~~la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~a 205 (307)
T 3fok_A 138 VDRGVDFAKTLVRINLSDAGTA-----------PTLEATAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQS 205 (307)
T ss_dssp HHHTCCEEEEEEEECTTCTTHH-----------HHHHHHHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSHHHHHHH
T ss_pred HHCCCCEEEEEEEECCCChhHH-----------HHHHHHHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCHHHHHHH
Confidence 344888866 666666531 12344555555543 347887763 1 212 233444556
Q ss_pred HHHHHHcCCC----EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC--CHHHHHHHHHh----cCccEEE
Q 023070 96 AKMLEDAGCS----LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR--HMEDVQKCLEE----TGCEGVL 165 (287)
Q Consensus 96 a~~l~~~G~~----~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~--s~~da~~~l~~----~gad~Vm 165 (287)
++...+.|+| .|-+- + + +.++++.+.+.+||+..||=. +.+++.+..+. .|+.|+.
T Consensus 206 aRiAaELGADs~~tivK~~---------y--~---e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~ 271 (307)
T 3fok_A 206 VAIAAGLGNDSSYTWMKLP---------V--V---EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLT 271 (307)
T ss_dssp HHHHHTCSSCCSSEEEEEE---------C--C---TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEE
T ss_pred HHHHHHhCCCcCCCEEEeC---------C--c---HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEe
Confidence 6777899999 77662 1 1 236788888899998888765 45666555432 4999999
Q ss_pred Eehhhhh
Q 023070 166 SAESLLE 172 (287)
Q Consensus 166 iGR~~l~ 172 (287)
+||-++.
T Consensus 272 vGRNIfQ 278 (307)
T 3fok_A 272 VGRTLLY 278 (307)
T ss_dssp ECTTTSS
T ss_pred echhhcc
Confidence 9998877
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.091 Score=46.64 Aligned_cols=126 Identities=14% Similarity=0.064 Sum_probs=85.3
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 89 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFG----------TTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLV-DSIEDAAD 89 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-ccHHHHHH
Confidence 36777877777 5677999999872 234344445566677777777665 4899887633 45688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEE-Ee----cCC-CCHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVL-AN----GNV-RHMEDVQKCL 156 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi-~n----GgI-~s~~da~~~l 156 (287)
+++.+++.|+|++-+..-..... .+...-+++++.+.+++ ++||+ +| .|+ -+++.+.++.
T Consensus 90 la~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 90 QSAEALNAGARNILLAPPSYFKN--VSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp HHHHHHHTTCSEEEECCCCSSCS--CCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 99999999999998763322110 01112246677888887 89986 45 243 5788888777
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.041 Score=48.72 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~ 130 (287)
..|+..+.+.+++.+ +. ..+.||.+|-....+.++....++.+.+.|.+-|++.-|+.. +.+.. ..|+..+.
T Consensus 115 qIgA~~~~n~~LLr~----va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~--y~~~~~~vdl~~i~ 187 (285)
T 3sz8_A 115 QVPAFLARQTDLVVA----IA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS--FGYDNLVVDMLGFR 187 (285)
T ss_dssp EECGGGTTCHHHHHH----HH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE--CSSSCEECCTTHHH
T ss_pred EECccccCCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--CCCCcCccCHHHHH
Confidence 456777777775554 33 368999999766557778888888899999877766433332 12211 26888899
Q ss_pred HHHhhC-CCcEEEe---------------cCCCC--HHHHHHHHHhcCccEEEEehh
Q 023070 131 AVKNAL-RIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 131 ~i~~~~-~ipVi~n---------------GgI~s--~~da~~~l~~~gad~VmiGR~ 169 (287)
.+++.. ++||++. ||-+. +.-+..++. .||||++|=+-
T Consensus 188 ~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA-~GA~gl~IE~H 243 (285)
T 3sz8_A 188 QMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIA-VGIAGLFLEAH 243 (285)
T ss_dssp HHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHH-HCCSEEEEEEE
T ss_pred HHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHH-hCCCEEEEEec
Confidence 999988 5999984 23221 223445555 59999998654
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.047 Score=48.49 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=82.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~ 87 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEAIS 87 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHH
Confidence 36777888777 4567999998872 223333334555566666665544 4898887532 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| .|+ -+++.+.++.+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNR---PSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc
Confidence 9999999999999776332211 0001224667788888899986 44 344 57888877764
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.049 Score=48.80 Aligned_cols=129 Identities=12% Similarity=0.060 Sum_probs=83.7
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~ 94 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILA----------NFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTS-HYSTQVCAA 94 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-CchHHHHHH
Confidence 36777888777 5678999998872 223333344555566666666544 589998863 246688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-........+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 95 la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 95 RSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp HHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 99999999999997753221000000111234667888888888876 44 44456777777764
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.05 Score=46.10 Aligned_cols=128 Identities=9% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCEEEEec-CCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 9 RPLFVQFC-ANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~-g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
.+++.=+= +.-|.....+++. ++.|+|.|.+|.. ++ .+.+..+++... ..-+.|-+-..
T Consensus 59 ~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~-----------~G-----~~~l~~~~~~~~---~~~~~V~~lts 119 (213)
T 1vqt_A 59 LKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSC-----------AG-----YESVERALSATD---KHVFVVVKLTS 119 (213)
T ss_dssp CEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGG-----------GC-----HHHHHHHHHHCS---SEEEEECCCTT
T ss_pred CCEEEEeecccCchHHHHHHHHHHHCCCCEEEEecc-----------CC-----HHHHHHHHHhcC---CCeEEEEEeCC
Confidence 45554442 3334555556654 4568999999942 22 122223322211 11122222112
Q ss_pred CC--h-hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHH---H------HHH
Q 023070 87 PN--L-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME---D------VQK 154 (287)
Q Consensus 87 ~~--~-~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~---d------a~~ 154 (287)
.+ . +.....++. .+.|++ ++..+ +.++.+++.++.| +..+||+--. | ..+
T Consensus 120 ~~~~l~~~v~~~a~~-~e~G~d-vV~~~---------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~ 181 (213)
T 1vqt_A 120 MEGSLEDYMDRIEKL-NKLGCD-FVLPG---------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE 181 (213)
T ss_dssp SCCCHHHHHHHHHHH-HHHTCE-EECCH---------------HHHHHHTTTCCSC-EEECCBC---------CCBCHHH
T ss_pred CCHHHHHHHHHHHHH-hcCCCE-EEEcH---------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH
Confidence 11 2 455667888 899998 43321 3467777777667 7788886432 1 456
Q ss_pred HHHhcCccEEEEehhhhhCcc
Q 023070 155 CLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~ 175 (287)
++ .|+|++.+||+++..++
T Consensus 182 -i~-aGad~iVvGR~I~~a~d 200 (213)
T 1vqt_A 182 -MK-GIANFAVLGREIYLSEN 200 (213)
T ss_dssp -HT-TTCSEEEESHHHHTSSC
T ss_pred -HH-CCCCEEEEChhhcCCCC
Confidence 66 69999999999997665
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.029 Score=51.88 Aligned_cols=110 Identities=17% Similarity=0.294 Sum_probs=71.6
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i 132 (287)
||..+.+.++ ++++. ..+.||.+|...+.+.++....++.+.+.|..-|++ |..+..-........|+..+..+
T Consensus 232 gs~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~l 306 (385)
T 3nvt_A 232 GARNMQNFEL----LKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPIL 306 (385)
T ss_dssp CGGGTTCHHH----HHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred CcccccCHHH----HHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHH
Confidence 4445555543 44443 358999999877778889988899999999865544 53233211001124688889999
Q ss_pred HhhCCCcEEEe----cCCCCH--HHHHHHHHhcCccEEEEehh
Q 023070 133 KNALRIPVLAN----GNVRHM--EDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 133 ~~~~~ipVi~n----GgI~s~--~da~~~l~~~gad~VmiGR~ 169 (287)
++..++||+.. +|-+.. .-+..+.. .||||+||=+-
T Consensus 307 k~~~~lpV~~D~th~~G~r~~v~~~a~AAvA-~GA~gl~iE~H 348 (385)
T 3nvt_A 307 KKETHLPVMVDVTHSTGRKDLLLPCAKAALA-IEADGVMAEVH 348 (385)
T ss_dssp HHHBSSCEEEEHHHHHCCGGGHHHHHHHHHH-TTCSEEEEEBC
T ss_pred HHhcCCCEEEcCCCCCCccchHHHHHHHHHH-hCCCEEEEEec
Confidence 98889999764 232222 23445555 69999999753
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.18 Score=44.29 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred EEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC--CC
Q 023070 13 VQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF--PN 88 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g--~~ 88 (287)
+-+...|.-. |+++ +.|+|.| + .|....++.- ||-..+.-..+.+..-+++|++.+ ..||.+.+-.| .+
T Consensus 32 ~m~tayDa~s----A~l~e~aG~d~i-l-vGdSl~~~~l-G~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s 104 (275)
T 3vav_A 32 AMLTCYDASF----AALLDRANVDVQ-L-IGDSLGNVLQ-GQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGT 104 (275)
T ss_dssp EEEECCSHHH----HHHHHHTTCSEE-E-ECTTHHHHTT-CCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSS
T ss_pred EEEeCcCHHH----HHHHHHcCCCEE-E-ECcHHHHHHc-CCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCC
Confidence 3444455433 5555 4599999 4 3333333322 234444455677777778888877 58999999875 35
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
.+++.+-+.++.+.|+++|.+-+.. .-.+.|+.+.+ .+|||++.
T Consensus 105 ~~~a~~~a~rl~kaGa~aVklEdg~----------~~~~~i~~l~~-~GIpv~gH 148 (275)
T 3vav_A 105 PADAFASAVKLMRAGAQMVKFEGGE----------WLAETVRFLVE-RAVPVCAH 148 (275)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCG----------GGHHHHHHHHH-TTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCch----------hHHHHHHHHHH-CCCCEEEe
Confidence 6677888888888999999987542 22467788776 48999864
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.077 Score=47.22 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=75.2
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~ 130 (287)
..|+..+.+.+++.+ +. ..+.||.+|-....+.++....++.+.+.|.+-|++.-|+.. +.+.. ..|+..+.
T Consensus 136 kIgA~~~~n~~LLr~----va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~--y~~~~~~vdl~~i~ 208 (298)
T 3fs2_A 136 QIPAFLCRQTDLLIA----AA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS--FGYNTLVSDMRALP 208 (298)
T ss_dssp EECGGGTTCHHHHHH----HH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE--CSSSCEECCTTHHH
T ss_pred EECccccCCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCCCccCHHHHH
Confidence 457888888886554 33 358999999766667788888889999999877766434332 12211 25888899
Q ss_pred HHHhhCCCcEEEe---------------cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~n---------------GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++ .++||++. ||-+. +.-+..++. .||||++|=+-+
T Consensus 209 ~lk~-~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvA-lGAdGl~IE~H~ 263 (298)
T 3fs2_A 209 IMAG-LGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVA-VGVAGFFIETHE 263 (298)
T ss_dssp HHHT-TTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHH-HCCSEEEEEEES
T ss_pred HHHH-cCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHH-cCCCEEEEEecC
Confidence 9998 79999983 33222 233445565 599999996543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.044 Score=48.63 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=81.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 88 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVG----------TTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTG-ANSTREAIEL 88 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCHHHHHHH
Confidence 6777888777 4577999998762 123333334454566666665544 489988743 2466899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 89 a~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3tak_A 89 TKAAKDLGADAALLVTPYYNK---PTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAE 153 (291)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred HHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHHc
Confidence 999999999999776332211 0001224667888888899986 43 44457777776664
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.043 Score=48.71 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=78.7
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~-~~t~~ai~ 87 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCG----------TTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGS-NNTAASIA 87 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHH
Confidence 46677777777 5677999998872 223333334555566666665544 4899888532 45688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-.... .+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3a5f_A 88 MSKWAESIGVDGLLVITPYYNK---TTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE 153 (291)
T ss_dssp HHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred HHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999776332211 0001123445566667788875 34 33346777766654
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=56.73 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----CC
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LR 137 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ 137 (287)
.+-++++++... .++.+-+. +.+ -++...++|+|+|-++.. +.+.++++++. .+
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev~---tle----e~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 244 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVECS---SLQ----EAVQAAEAGADLVLLDNF------------KPEELHPTATVLKAQFPS 244 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEES---SHH----HHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcCCeEEEecC---CHH----HHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 344555555442 45555432 222 234445689999988741 12344433332 24
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
+||.++||| +++.+.++.+ +|+|++.+|+.....|++=
T Consensus 245 ~~I~ASGGI-t~~ni~~~~~-aGaD~i~vGs~i~~a~~~D 282 (299)
T 2jbm_A 245 VAVEASGGI-TLDNLPQFCG-PHIDVISMGMLTQAAPALD 282 (299)
T ss_dssp SEEEEESSC-CTTTHHHHCC-TTCCEEECTHHHHSCCCCC
T ss_pred eeEEEECCC-CHHHHHHHHH-CCCCEEEEChhhcCCCCcc
Confidence 899999999 8899998887 6999999999776667653
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.045 Score=48.09 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc---------------cccH
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---------------RADW 126 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~---------------~~~~ 126 (287)
.+.+..+.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|.+---..++...++. ..-+
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 345555665544444555555555 467889999999999999999985222222111110 0115
Q ss_pred HHHHHHHhh-CCCcEEEecCCC-----CHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 127 NAIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 127 ~~i~~i~~~-~~ipVi~nGgI~-----s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++++++. +++||+.-|-.+ ..+...+.+.+.|+|+|.+.---+....
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~ 138 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESA 138 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCH
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHH
Confidence 778888887 899999876532 2255555555579999999654444433
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=52.56 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCEEEEecc-CCCCcCCC--CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 93 IKYAKMLEDAGCSLLAVHGR-TRDEKDGK--KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~r-t~~~~~~~--~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++|+..+++|++.|.+--+ +.+.+... ....+.+.++++++.+++||++-+++...++++.+.+ .|||.| -...
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~a-aGAD~I-d~s~ 108 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEE-LKVDML-DESE 108 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHHH-TTCSEE-EEET
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHHH-cCCCEE-EcCC
Confidence 47899999999999977521 11111111 1135789999999999999999888888888887775 799999 3223
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
.+..+.+...++.
T Consensus 109 ~~~~~~li~~i~~ 121 (297)
T 4adt_A 109 VLTMADEYNHINK 121 (297)
T ss_dssp TSCCSCSSCCCCG
T ss_pred CCCHHHHHHHHHh
Confidence 3456677776654
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.038 Score=50.20 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=62.5
Q ss_pred ccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccc----cHHHHHHHHhhCCCcEEEe--cCCC
Q 023070 74 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA----DWNAIKAVKNALRIPVLAN--GNVR 147 (287)
Q Consensus 74 ~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~----~~~~i~~i~~~~~ipVi~n--GgI~ 147 (287)
..+.|+.+.+..+.+.+. +.+.++..|+++|.+|.....+.....+.. .++.++.+++.+++||+.- |...
T Consensus 114 ~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~ 190 (349)
T 1p0k_A 114 NPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGM 190 (349)
T ss_dssp CSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred CCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 457899988876655443 445677889999999865433211111111 3578999999899999975 4557
Q ss_pred CHHHHHHHHHhcCccEEEEe
Q 023070 148 HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiG 167 (287)
+++++..+.+ .|+|+|.+.
T Consensus 191 ~~~~a~~a~~-~Gad~I~v~ 209 (349)
T 1p0k_A 191 SKASAGKLYE-AGAAAVDIG 209 (349)
T ss_dssp CHHHHHHHHH-HTCSEEEEE
T ss_pred CHHHHHHHHH-cCCCEEEEc
Confidence 8999988877 699999884
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.076 Score=47.43 Aligned_cols=145 Identities=15% Similarity=0.213 Sum_probs=87.7
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEeccC-ChhhhhcCcc-cccccCChHHHHHHHHHHhhc--cCCcE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNY-GAFLMDNLPLVKSLVEKLALN--LNVPV 79 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~gc-P~~~~~~~~~-G~~l~~~~~~~~~iv~~v~~~--~~~pv 79 (287)
+.|+++-+ +| +|+...+.++. .+.|+.+|.|--.. |.+ .++. |..+....+.+.+|-.++... .+.++
T Consensus 80 ~~PviaD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iEDq~~~Kr---cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~ 155 (302)
T 3fa4_A 80 STPVIADADTGYG-GPIMVARTTEQYSRSGVAAFHIEDQVQTKR---CGHLAGKILVDTDTYVTRIRAAVQARQRIGSDI 155 (302)
T ss_dssp TSCEEEECTTTTS-SHHHHHHHHHHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCcc---cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCE
Confidence 67888665 34 58888888874 56799999997432 221 1222 233444334444443333221 24444
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEe---cC---CCC
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLAN---GN---VRH 148 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~n---Gg---I~s 148 (287)
.+=-|+. ...+++++=++.+.++|+|.|-+++. .+.+.++++.+.+ ++|+.+| || ..|
T Consensus 156 ~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~-----------~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~ 224 (302)
T 3fa4_A 156 VVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI-----------TSREMARQVIQDLAGWPLLLNMVEHGATPSIS 224 (302)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC-----------CCHHHHHHHHHHTTTSCEEEECCTTSSSCCCC
T ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC-----------CCHHHHHHHHHHhcCCceeEEEecCCCCCCCC
Confidence 4444442 34678888899999999999999864 2346688888887 4898776 33 234
Q ss_pred HHHHHHHHHhcCccEEEEehhhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l 171 (287)
.+++ - +.|+..|..+-.++
T Consensus 225 ~~eL---~-~lGv~~v~~~~~~~ 243 (302)
T 3fa4_A 225 AAEA---K-EMGFRIIIFPFAAL 243 (302)
T ss_dssp HHHH---H-HHTCSEEEETTTTH
T ss_pred HHHH---H-HcCCCEEEEchHHH
Confidence 4433 3 35899888875543
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=49.18 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.-++.+.+...|++-+- |+..--+.++++ +++|||+.|+|+|.+++.+ ++ .|||+|..|.--+.+
T Consensus 119 ~~~~~I~~~kPD~iEiL----------Pg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~-aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 119 RGIEQIETLGVDVVEVL----------PGAVAPKVARKI---PGRTVIAAGLVETEEEARE-IL-KHVSAISTSSRILWK 183 (188)
T ss_dssp HHHHHHHHHTCSEEEEE----------SGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-HT-TTSSEEEECCHHHHT
T ss_pred hhhhhccccCCCeEeec----------CCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-HH-CCCeEEEeCCHHHhC
Confidence 34455566667766554 222223556555 6899999999999999999 88 599999999766544
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.011 Score=54.04 Aligned_cols=43 Identities=19% Similarity=0.529 Sum_probs=37.3
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
...|+.++.+++.+++||+.-| +.+++++..+.+ .|+|+|.+.
T Consensus 203 ~~~w~~i~~lr~~~~~PvivK~-v~~~e~A~~a~~-~GaD~I~vs 245 (352)
T 3sgz_A 203 SFCWNDLSLLQSITRLPIILKG-ILTKEDAELAMK-HNVQGIVVS 245 (352)
T ss_dssp TCCHHHHHHHHHHCCSCEEEEE-ECSHHHHHHHHH-TTCSEEEEC
T ss_pred CCCHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHH-cCCCEEEEe
Confidence 4689999999999999998864 689999998887 699999874
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.11 Score=46.66 Aligned_cols=126 Identities=11% Similarity=0.063 Sum_probs=83.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg-~~~t~~ai~l 94 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAG----------TTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVG-TNDTRDSIEF 94 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CcCHHHHHHH
Confidence 5567777776 5678999999983 233333345555677777776655 589988753 2456789999
Q ss_pred HHHHHHcCC-CEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHHh
Q 023070 96 AKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLEE 158 (287)
Q Consensus 96 a~~l~~~G~-~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~~ 158 (287)
++.+++.|+ |++.+..-.... .+...-.++++.+.+++++||+ +| |---+++.+.++.+.
T Consensus 95 a~~A~~~Ga~davlv~~P~y~~---~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (311)
T 3h5d_A 95 VKEVAEFGGFAAGLAIVPYYNK---PSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADH 161 (311)
T ss_dssp HHHHHHSCCCSEEEEECCCSSC---CCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTS
T ss_pred HHHHHhcCCCcEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcC
Confidence 999999996 999776432211 0001224667888888899986 44 444577777776653
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.083 Score=48.12 Aligned_cols=107 Identities=11% Similarity=0.149 Sum_probs=76.7
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
-||.=+++..++.++-+ .+.||.+|.... +.++....++.+.+.|.+.+.+|+.+.-+. .....|+..|..+
T Consensus 130 I~S~~~~n~~LL~~va~-----~gkPviLstGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~--~~~~~nL~ai~~l 201 (349)
T 2wqp_A 130 IGSGECNNYPLIKLVAS-----FGKPIILSTGMN-SIESIKKSVEIIREAGVPYALLHCTNIYPT--PYEDVRLGGMNDL 201 (349)
T ss_dssp ECGGGTTCHHHHHHHHT-----TCSCEEEECTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSSC--CGGGCCTHHHHHH
T ss_pred ECcccccCHHHHHHHHh-----cCCeEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCCC--ChhhcCHHHHHHH
Confidence 36666788887665533 589999997664 778888888888899998888886543322 1224789999999
Q ss_pred HhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 133 KNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 133 ~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.. ++||..++--....-+..++. .||| ||=+-+
T Consensus 202 k~~f~~lpVg~sdHt~G~~~~~AAvA-lGA~--iIEkH~ 237 (349)
T 2wqp_A 202 SEAFPDAIIGLSDHTLDNYACLGAVA-LGGS--ILERHF 237 (349)
T ss_dssp HHHCTTSEEEEECCSSSSHHHHHHHH-HTCC--EEEEEB
T ss_pred HHHCCCCCEEeCCCCCcHHHHHHHHH-hCCC--EEEeCC
Confidence 9998 899988765444566666676 5898 554433
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.032 Score=52.00 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred HcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCE
Q 023070 30 VEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 106 (287)
Q Consensus 30 ~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~ 106 (287)
.+.||..+.+..+ .|.. |. .+++.-.+.++++|+.+ ++++.+...-+|+..+++++++.+++.++.+
T Consensus 171 ~~~Gf~~~K~Kv~~g~~~-------g~---~~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~ 240 (404)
T 3ekg_A 171 QKMGFIGGKMPLHHGPSE-------GE---EGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKW 240 (404)
T ss_dssp HHTTCSEEEEECCCCGGG-------HH---HHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCE
T ss_pred HHcCCCEEEEecCCCCcc-------cc---ccHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcE
Confidence 3568888888754 1210 11 12455667788888876 5788999888999999999999999999887
Q ss_pred EEEeccCCCCcCCCCccccHHHHHHHHhhCCCcE-EEec-CCCCHHHHHHHHHhcCccEEEE
Q 023070 107 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV-LANG-NVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 107 I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipV-i~nG-gI~s~~da~~~l~~~gad~Vmi 166 (287)
| ++.- .+.|++.++++++.+++|| |+.| .+.+..++.++++...+|.|++
T Consensus 241 i-------EeP~---~~~d~~~~a~l~~~~~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~ 292 (404)
T 3ekg_A 241 I-------EEAL---PPDDYWGYAELRRNAPTGMMVTTGEHEATRWGFRMLLEMGCCDIIQP 292 (404)
T ss_dssp E-------ECCS---CTTCHHHHHHHHHHSCTTCEEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred E-------ecCC---CcccHHHHHHHHHhcCCCeEEEecCccCCHHHHHHHHHcCCCCeEec
Confidence 7 2211 1357889999999988874 3433 5899999999998777888876
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.071 Score=44.90 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=79.6
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+.-.+++.+.+.++.+ +.|.|.|| |. .+++.+.+ ++. ++|+.--++.... . +
T Consensus 60 fvn~~~~~i~~~~~~~--~ld~vQLH-------------G~---e~~~~~~~----l~~--~~~vika~~v~~~-~---~ 111 (205)
T 1nsj_A 60 FVNEEPEKILDVASYV--QLNAVQLH-------------GE---EPIELCRK----IAE--RILVIKAVGVSNE-R---D 111 (205)
T ss_dssp ESSCCHHHHHHHHHHH--TCSEEEEC-------------SC---CCHHHHHH----HHT--TSEEEEEEEESSH-H---H
T ss_pred EeCCCHHHHHHHHHhh--CCCEEEEC-------------CC---CCHHHHHH----Hhc--CCCEEEEEEcCCH-H---H
Confidence 3345666666666544 67999999 21 34554433 322 3667655554321 1 2
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+ ..+.+..+|++.+..... .++++| ..||+.++.++ ..+.|++..||+ +++.+.++++..++.||=+.+|.-..
T Consensus 112 l-~~~~~~~~d~~LlD~~~~--~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~ 186 (205)
T 1nsj_A 112 M-ERALNYREFPILLDTKTP--EYGGSGKTFDWSLILPYR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAF 186 (205)
T ss_dssp H-HHHGGGTTSCEEEEESCS--SSSSCCSCCCGGGTGGGG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEE
T ss_pred H-HHHHHcCCCEEEECCCCC--CCCCCCCccCHHHHHhhh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecC
Confidence 2 223344489998875443 122222 47998776542 336899999999 67999888887799999999887644
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
|.
T Consensus 187 pG 188 (205)
T 1nsj_A 187 PG 188 (205)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.017 Score=52.02 Aligned_cols=121 Identities=12% Similarity=0.129 Sum_probs=85.3
Q ss_pred EecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhh
Q 023070 14 QFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQD 91 (287)
Q Consensus 14 Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~ 91 (287)
.+.+.+|+.+.+.++ .++.||..+.+..|. .. ..+.++++++.. ++.+.+..+-+|+.++
T Consensus 127 ~~~~~~~e~~~~~a~~~~~~G~~~~KiKvg~--------------~~----d~~~v~avr~~~~~~~l~vDaN~~~~~~~ 188 (324)
T 1jpd_X 127 TVVIGTPDQMANSASTLWQAGAKLLKVKLDN--------------HL----ISERMVAIRTAVPDATLIVDANESWRAEG 188 (324)
T ss_dssp EECSCCHHHHHHHHHHHHHTTCSEEEEECCS--------------SC----HHHHHHHHHHHCTTSEEEEECTTCCCSTT
T ss_pred EeeCCCHHHHHHHHHHHHHcCCCEEEEEeCC--------------ch----HHHHHHHHHHhCCCCEEEEECcCCCCHHH
Confidence 455678998887666 567899999997651 01 234566676655 5677777777899999
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++++.+++.++.+| ++.-. +.|++.+++++ .++||.+.=.+.+..++.++++. +|.+.+
T Consensus 189 a~~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~l~--~~ipIa~dE~~~~~~~~~~~~~~--~~~i~i 249 (324)
T 1jpd_X 189 LAARCQLLADLGVAML-------EQPLP---AQDDAALENFI--HPLPICADESCHTRSNLKALKGR--YEMVNI 249 (324)
T ss_dssp HHHHHHHHHHTTCCEE-------ECCSC---TTSCGGGGSSC--CSSCEEESTTCSSGGGHHHHBTT--BSEEEE
T ss_pred HHHHHHHHHhCCCCEE-------ECCCC---CCCHHHHHhcc--CCCCEEEcCCCCCHHHHHHHHhh--CCEEEE
Confidence 9999999999988877 11100 12344333332 57999998889999999988863 776665
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.014 Score=54.39 Aligned_cols=145 Identities=13% Similarity=0.177 Sum_probs=96.3
Q ss_pred CCCCEEEEecC---CCHHHHHHHHH-HHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcE
Q 023070 7 EDRPLFVQFCA---NDPEILLNAAR-RVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi~g---~~~~~~~~aA~-~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv 79 (287)
...|+..+.++ .+|+.+.+.++ .++.| |..+.+..|.. +..+....+...+.+++|++.+ ++.+
T Consensus 165 ~~vp~~~~~g~~~~~~~~~~~~~a~~~~~~G~~~~~KiKvG~~---------~~~~~~~~~~d~~~v~avR~~~G~~~~l 235 (413)
T 1kcz_A 165 NAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLK---------GEKLLEYVKWLRDRIIKLRVREDYAPIF 235 (413)
T ss_dssp CCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTT---------SHHHHHHHHHHHHHHHHHCSSTTCCCEE
T ss_pred CCeeeeEecCccccCCHHHHHHHHHHHHHhcchhheeeccCCC---------ccchhhHHHHHHHHHHHHHHhcCCCceE
Confidence 45566665543 24555555443 34557 77777755421 0001111122557788888876 4667
Q ss_pred EEEecCC------CChhhHHHHHHHHHHc--CCC-EEEEeccCCCCcCCCC-ccccHHHHHHHHhh-----CCCcEEEec
Q 023070 80 SCKIRVF------PNLQDTIKYAKMLEDA--GCS-LLAVHGRTRDEKDGKK-FRADWNAIKAVKNA-----LRIPVLANG 144 (287)
Q Consensus 80 ~vKiR~g------~~~~~~~~~a~~l~~~--G~~-~I~vh~rt~~~~~~~~-~~~~~~~i~~i~~~-----~~ipVi~nG 144 (287)
.+...-+ |+.++++++++.+++. ++. +| ++.-... .+.||+.++++++. +++||.+.=
T Consensus 236 ~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~~~i-------EqP~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE 308 (413)
T 1kcz_A 236 HIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRI-------EGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADE 308 (413)
T ss_dssp EEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEE-------ECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECT
T ss_pred EEecCCCcccccCCCHHHHHHHHHHHHhhcCCcceEE-------ecCCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCC
Confidence 7777777 8989999999999998 555 33 1110000 12378889999988 889999988
Q ss_pred CCCCHHHHHHHHHhcCccEEEEe
Q 023070 145 NVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 145 gI~s~~da~~~l~~~gad~VmiG 167 (287)
.+.+++++.++++...+|.|.+=
T Consensus 309 ~~~~~~~~~~~i~~~a~d~v~ik 331 (413)
T 1kcz_A 309 WCNTVEDVKFFTDNKAGHMVQIK 331 (413)
T ss_dssp TCCSHHHHHHHHHTTCSSEEEEC
T ss_pred CcCCHHHHHHHHHhCCCCEEEeC
Confidence 89999999999998789999883
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.096 Score=43.51 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=75.8
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN 88 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~ 88 (287)
++++-+-..+.++..+.++.+..|+|.|+++++. . .. +| + ++++++++.. +.|+.+-+-.. +
T Consensus 2 ~li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~--~--~~--~g------~----~~i~~l~~~~~~~~i~~~l~~~-d 64 (207)
T 3ajx_A 2 KLQVAIDLLSTEAALELAGKVAEYVDIIELGTPL--I--KA--EG------L----SVITAVKKAHPDKIVFADMKTM-D 64 (207)
T ss_dssp EEEEEECCSCHHHHHHHHHHHGGGCSEEEECHHH--H--HH--HC------T----HHHHHHHHHSTTSEEEEEEEEC-S
T ss_pred eEEEEeCCCCHHHHHHHHHHhhccCCEEEECcHH--H--Hh--hC------H----HHHHHHHHhCCCCeEEEEEEec-C
Confidence 3555665668888888887666688999996532 1 11 12 2 3566666665 77887633222 2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhhCCCcEEE-ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLA-NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~~~ipVi~-nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
. ...+++.+.++|++++++|.-... ... +.++.+++ .++++.+ .-...++++..+.+...|+|.|-+
T Consensus 65 i--~~~~~~~a~~~Gad~v~vh~~~~~--------~~~~~~~~~~~~-~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~ 133 (207)
T 3ajx_A 65 A--GELEADIAFKAGADLVTVLGSADD--------STIAGAVKAAQA-HNKGVVVDLIGIEDKATRAQEVRALGAKFVEM 133 (207)
T ss_dssp C--HHHHHHHHHHTTCSEEEEETTSCH--------HHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHHHTTCSEEEE
T ss_pred c--cHHHHHHHHhCCCCEEEEeccCCh--------HHHHHHHHHHHH-cCCceEEEEecCCChHHHHHHHHHhCCCEEEE
Confidence 1 233578888999999999965321 112 22233333 2555411 223447776333444468999855
Q ss_pred ehh
Q 023070 167 AES 169 (287)
Q Consensus 167 GR~ 169 (287)
..+
T Consensus 134 ~~~ 136 (207)
T 3ajx_A 134 HAG 136 (207)
T ss_dssp ECC
T ss_pred Eec
Confidence 433
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.11 Score=43.77 Aligned_cols=128 Identities=15% Similarity=0.120 Sum_probs=79.1
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcE--EEEecCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPV--SCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv--~vKiR~g 86 (287)
++++-+=-.+.++..+.++.+..++|.+|+.+ |. +.. +| .++++++++. .+.|+ .+|+-
T Consensus 8 ~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~--~~-~~~---~G----------~~~i~~lr~~~~~~~i~ld~~l~-- 69 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNVASYVDVIEVGT--IL-AFA---EG----------MKAVSTLRHNHPNHILVCDMKTT-- 69 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HH-HHH---HT----------THHHHHHHHHCTTSEEEEEEEEC--
T ss_pred CeEEEeCCCCHHHHHHHHHHhcCCceEEEeCc--HH-HHh---cC----------HHHHHHHHHhCCCCcEEEEEeec--
Confidence 46666655677777777776666899999985 21 111 12 3567777766 35454 56643
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhhCCCcEEE-ecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLA-NGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~~~ipVi~-nGgI~s~~da~~~l~~~gad~V 164 (287)
.. ...+++.+.++|++++++|+-... ... +.++.+++. ++++++ .=++.|++++.++.+. |+|.+
T Consensus 70 d~---p~~~~~~~~~aGad~i~vh~~~~~--------~~~~~~~~~~~~~-g~~~~~d~l~~~T~~~~~~~~~~-g~d~v 136 (218)
T 3jr2_A 70 DG---GAILSRMAFEAGADWITVSAAAHI--------ATIAACKKVADEL-NGEIQIEIYGNWTMQDAKAWVDL-GITQA 136 (218)
T ss_dssp SC---HHHHHHHHHHHTCSEEEEETTSCH--------HHHHHHHHHHHHH-TCEEEEECCSSCCHHHHHHHHHT-TCCEE
T ss_pred cc---HHHHHHHHHhcCCCEEEEecCCCH--------HHHHHHHHHHHHh-CCccceeeeecCCHHHHHHHHHc-Cccce
Confidence 22 234678899999999999965321 111 334445443 555443 3334678888888774 99988
Q ss_pred EEeh
Q 023070 165 LSAE 168 (287)
Q Consensus 165 miGR 168 (287)
.+..
T Consensus 137 ~~~~ 140 (218)
T 3jr2_A 137 IYHR 140 (218)
T ss_dssp EEEC
T ss_pred eeee
Confidence 7644
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.075 Score=46.74 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC---------------ccccH
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK---------------FRADW 126 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~---------------~~~~~ 126 (287)
.+.+..+.+++.-...+..=+-.| ++.+.+.++++.+++.|+|.|-+---..++...++ ...-+
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 355566666554444555555556 56788999999999999999988522222211111 01125
Q ss_pred HHHHHHHhh-CCCcEEEecCCC-----CHHHHHHHHHhcCccEEEEehhhhh
Q 023070 127 NAIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 127 ~~i~~i~~~-~~ipVi~nGgI~-----s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.++++++. +++||+.-|-.+ ..+...+...+.|+|||.+.---+.
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~e 137 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTN 137 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGG
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHH
Confidence 778888887 799999876432 3354444555579999999544333
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.11 Score=46.31 Aligned_cols=127 Identities=13% Similarity=0.004 Sum_probs=83.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg-~~~t~~ai~l 101 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQG----------SNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSG-CESTQATVEM 101 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecC-CCCHHHHHHH
Confidence 6677777776 4567999998872 234333445556677788777765 588888742 2467889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-..... ..+...-+++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 102 a~~A~~~Gadavlv~~P~y~~~-~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 102 TVSMAQVGADAAMVVTPCYYRG-RMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp HHHHHHTTCSEEEEECCCTTGG-GCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCCCcCCC-CCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence 9999999999997753221100 00001234667788888889986 44 32357777777764
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.18 Score=44.10 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=88.2
Q ss_pred EEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCCC--C
Q 023070 13 VQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP--N 88 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g~--~ 88 (287)
+-+...|.-. |++++ .|+|.|=+ |....++.- |+-..+.-..+.+..-+++|++.++. +|.+.+..|. +
T Consensus 20 ~~~tayD~~s----A~l~e~aG~d~ilv--Gdsl~~~~l-G~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (264)
T 1m3u_A 20 ATITAYDYSF----AKLFADEGLNVMLV--GDSLGMTVQ-GHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYAT 92 (264)
T ss_dssp EEEECCSHHH----HHHHHHHTCCEEEE--CTTHHHHTT-CCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSS
T ss_pred EEEeCcCHHH----HHHHHHcCCCEEEE--CHHHHHHHc-CCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCC
Confidence 3455566433 55554 49999966 766655443 34555556677777788888887764 5677765532 4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE-----------ecCC----CCHHHHH
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----------NGNV----RHMEDVQ 153 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~-----------nGgI----~s~~da~ 153 (287)
.+++++.+.++.++|+++|.+-+.. .-.+.|+.+.+. ++||++ .||. ++.+.+.
T Consensus 93 ~~~a~~~a~rl~kaGa~aVklEgg~----------e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt~~~a~ 161 (264)
T 1m3u_A 93 PEQAFENAATVMRAGANMVKIEGGE----------WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGD 161 (264)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCSG----------GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcH----------HHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCCHHHHH
Confidence 5677777888999999999886541 223667777654 799983 3554 3544444
Q ss_pred HHH------HhcCccEEEE
Q 023070 154 KCL------EETGCEGVLS 166 (287)
Q Consensus 154 ~~l------~~~gad~Vmi 166 (287)
+++ ++.|||++.+
T Consensus 162 ~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 162 QLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp HHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHCCCcEEEE
Confidence 433 3359998877
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.04 Score=46.94 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=81.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
.-++..|...|...+.+.++.+ +.|+|.|.+-.- + |.... +.....++++++++.++.|+.+-+-. .
T Consensus 7 ~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~--------D--g~fv~-~~~~~~~~~~~lr~~~~~~~~v~lmv-~ 74 (228)
T 1h1y_A 7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIM--------D--GHFVP-NLTIGAPVIQSLRKHTKAYLDCHLMV-T 74 (228)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEE--------B--SSSSS-CBCBCHHHHHHHHTTCCSEEEEEEES-S
T ss_pred CeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEe--------c--CCcCc-chhhCHHHHHHHHhhcCCcEEEEEEe-c
Confidence 3477899999999999988865 568998766530 1 11100 11112366677777666677655433 2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc--CccEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET--GCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~--gad~V 164 (287)
+. .++++.+.++|+|.+++|+-... .. .+.++.+++. ++.++..=.-.|+.+..+.+... ++|.|
T Consensus 75 d~---~~~i~~~~~agad~v~vH~~~~~--------~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~~~~d~v 142 (228)
T 1h1y_A 75 NP---SDYVEPLAKAGASGFTFHIEVSR--------DNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAENPVELV 142 (228)
T ss_dssp CG---GGGHHHHHHHTCSEEEEEGGGCT--------TTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSSSCCSEE
T ss_pred CH---HHHHHHHHHcCCCEEEECCCCcc--------cHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEE
Confidence 32 33466667799999999976432 22 3556666654 55554433334544443344333 79999
Q ss_pred EEeh
Q 023070 165 LSAE 168 (287)
Q Consensus 165 miGR 168 (287)
.++.
T Consensus 143 l~~s 146 (228)
T 1h1y_A 143 LVMT 146 (228)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8863
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0042 Score=55.51 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC------
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL------ 136 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~------ 136 (287)
.+-++++++... .++.+-+. +.++ ++...++|+|+|-++..+ .+.++++++.+
T Consensus 186 ~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~~------------~~~l~~~v~~l~~~~~g 246 (294)
T 3c2e_A 186 TNAVKNARAVCGFAVKIEVECL---SEDE----ATEAIEAGADVIMLDNFK------------GDGLKMCAQSLKNKWNG 246 (294)
T ss_dssp HHHHHHHHHHHCTTSCEEEECS---SSHH----HHHHHHHTCSEEECCC-------------------------------
T ss_pred HHHHHHHHHhcCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhcccccC
Confidence 444555555443 45555432 2233 333446899999876421 12233333222
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
++||.++||| +++.+.++.+ +|+|++.+|+.....|++
T Consensus 247 ~~~v~I~ASGGI-t~~ni~~~~~-~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 247 KKHFLLECSGGL-NLDNLEEYLC-DDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp --CCEEEEECCC-CC------CC-CSCSEEECGGGTSSCCCC
T ss_pred CCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEechhcCCCCC
Confidence 3899999999 8899998887 799999999887665653
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.035 Score=49.54 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=78.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~l 91 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLG----------STGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVADAVAQ 91 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHH
Confidence 6777888777 5678999997762 223333334455566666665544 4888887532 456889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCL 156 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l 156 (287)
++.+++.|+|++.+..-..... +...-+++++.+.+++++||+ +| |---+++.+.++.
T Consensus 92 a~~a~~~Gadavlv~~P~y~~~---~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 92 AKLYEKLGADGILAILEAYFPL---KDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp HHHHHHHTCSEEEEEECCSSCC---CHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCCCCCC---CHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 9999999999997753322110 001224567777777888875 44 2234566666554
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.081 Score=46.55 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=69.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 85 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------ 85 (287)
+|++..+.|. +++.|+++|.|=-| ....+.|+++.+ .++||..-+.+
T Consensus 93 s~~~a~~na~rl~kaGa~aVklEdg-------------------~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~ 152 (275)
T 1o66_A 93 SKEQAFAAAAELMAAGAHMVKLEGG-------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYK 152 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCc-------------------HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeE
Confidence 5776666554 56678888888622 233445555543 37888744332
Q ss_pred --C--CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 --F--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 --g--~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
| ...+++++-++.++++|++.|.+.+.. -+..+++.+.+++|+|+-|.= .+|
T Consensus 153 v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp------------~~~a~~it~~l~iP~igIGaG------------~~~ 208 (275)
T 1o66_A 153 VQGRGGKAQALLNDAKAHDDAGAAVVLMECVL------------AELAKKVTETVSCPTIGIGAG------------ADC 208 (275)
T ss_dssp ------CHHHHHHHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESSC------------SCS
T ss_pred EEeChHHHHHHHHHHHHHHHcCCcEEEEecCC------------HHHHHHHHHhCCCCEEEECCC------------CCC
Confidence 1 123567778889999999999997531 156788999999999987642 368
Q ss_pred cEEEEe
Q 023070 162 EGVLSA 167 (287)
Q Consensus 162 d~VmiG 167 (287)
||-++-
T Consensus 209 dgQvLV 214 (275)
T 1o66_A 209 DGQVLV 214 (275)
T ss_dssp SEEEEC
T ss_pred Ccceee
Confidence 886543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=55.04 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+.++.+.++|++.|.++..... ....++.++++++.. ++||++ |++.+++++..+.+ .|||+|.+|
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~-aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH------SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAE-AGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS------BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCCc------chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHH-cCCCEEEEC
Confidence 45678889999999999999844321 124468899999887 788887 88999999998888 699999986
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.071 Score=47.92 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
..++.+.+.++.+++..+.|+.+-+-.... ..+..+.++.+.+.|++.|.+|... + ++.++.+++.
T Consensus 50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~---------p--~~~~~~l~~~- 117 (328)
T 2gjl_A 50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND---------P--GEHIAEFRRH- 117 (328)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC---------C--HHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC---------c--HHHHHHHHHc-
Confidence 347888888888887777777666543210 2334567888889999999999531 1 4677778765
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEE-eh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 168 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~Vmi-GR 168 (287)
++||+. .+.+++++..+.+ .|+|+|.+ |.
T Consensus 118 gi~vi~--~v~t~~~a~~~~~-~GaD~i~v~g~ 147 (328)
T 2gjl_A 118 GVKVIH--KCTAVRHALKAER-LGVDAVSIDGF 147 (328)
T ss_dssp TCEEEE--EESSHHHHHHHHH-TTCSEEEEECT
T ss_pred CCCEEe--eCCCHHHHHHHHH-cCCCEEEEECC
Confidence 888885 4889999998887 59999988 54
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.069 Score=46.74 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=60.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+++...+-|+ .+++|+|.||||.| +.....++.+.+++..+.+.+++|+++... + .+.++
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~g------------~~~v~~~ee~~rvv~~i~~~~~~pisIDT~------~-~~v~~ 83 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDST------N-IKAIE 83 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECS------C-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCC------------CCCCChHHHHHHHHHHHHHhCCCeEEEeCC------C-HHHHH
Confidence 5555555554 66789999999974 333456778888899888877999999832 1 23455
Q ss_pred HHHHc--CCCEE-EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 98 MLEDA--GCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 98 ~l~~~--G~~~I-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
...++ |++.| .|++. ..+++.+..+....+.|+++
T Consensus 84 aAl~a~~Ga~iINdvs~~----------~d~~~~~~~~~a~~~~~vvl 121 (262)
T 1f6y_A 84 AGLKKCKNRAMINSTNAE----------REKVEKLFPLAVEHGAALIG 121 (262)
T ss_dssp HHHHHCSSCEEEEEECSC----------HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhhCCCCCEEEECCCC----------cccHHHHHHHHHHhCCcEEE
Confidence 55555 88877 35542 12233344455556788876
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.075 Score=48.80 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC--------------C---------------cCC-------
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------E---------------KDG------- 119 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------~---------------~~~------- 119 (287)
+.|+.+-+-...+.+...+++++++++|++.|.||--... + ...
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 4566666544345566778888888899998888632111 0 000
Q ss_pred CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
......|+.++.+++.+++||++-| +.+++++..+.+ .|+|+|.+.
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~-v~~~e~a~~a~~-~Gad~I~vs 257 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKG-IQHPEDADMAIK-RGASGIWVS 257 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEE-ECSHHHHHHHHH-TTCSEEEEC
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHH-cCCCEEEEc
Confidence 0123578999999999999999864 789999998887 699999883
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.026 Score=52.47 Aligned_cols=67 Identities=27% Similarity=0.478 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+.++.+.++|++.|.+.... +.+ ...++.++++++..++||++ |++.|++++..+.+ .|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~-----G~~-~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~-aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAH-----GHS-LNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIE-NGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSC-----CSB-HHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCC-----CCc-ccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHH-cCCCEEEEe
Confidence 577889999999999874111 110 12357888998888899887 78999999998887 699999996
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=49.31 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=82.8
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
++..|...|...+.+..+.+. .|+|.|.+-.- + |... .+..+..++++++++.++.|+.+-+-. .+.
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~--------D--G~fv-p~~~~g~~~v~~lr~~~~~~~~vhlmv-~dp 74 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVM--------D--GRFV-PNITIGPLIVDAIRPLTKKTLDVHLMI-VEP 74 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEE--------B--SSSS-SCBCBCHHHHHHHGGGCCSEEEEEEES-SSG
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEE--------e--cCCC-cchhhhHHHHHHHHhhcCCcEEEEEEc-cCH
Confidence 688999999999999998664 58998666530 0 1111 112222377888888777788865544 233
Q ss_pred hhHHHHHHHHHHcCCCEEEEecc--CCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+ ++++.+.++|+|++++|.- ... ...+.++.+++. ++-+...=.-.|+.+..+.+.. ++|.|.++
T Consensus 75 ~---~~i~~~~~aGadgv~vh~e~~~~~--------~~~~~~~~i~~~-g~~~gv~~~p~t~~e~~~~~~~-~~D~v~~m 141 (230)
T 1tqj_A 75 E---KYVEDFAKAGADIISVHVEHNASP--------HLHRTLCQIREL-GKKAGAVLNPSTPLDFLEYVLP-VCDLILIM 141 (230)
T ss_dssp G---GTHHHHHHHTCSEEEEECSTTTCT--------THHHHHHHHHHT-TCEEEEEECTTCCGGGGTTTGG-GCSEEEEE
T ss_pred H---HHHHHHHHcCCCEEEECcccccch--------hHHHHHHHHHHc-CCcEEEEEeCCCcHHHHHHHHh-cCCEEEEE
Confidence 3 3567778999999999954 211 123556666654 4333333344565555544443 79988776
Q ss_pred h
Q 023070 168 E 168 (287)
Q Consensus 168 R 168 (287)
.
T Consensus 142 s 142 (230)
T 1tqj_A 142 S 142 (230)
T ss_dssp S
T ss_pred E
Confidence 4
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.041 Score=48.76 Aligned_cols=93 Identities=8% Similarity=0.092 Sum_probs=60.8
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipVi 141 (287)
.+.+++.++.. ..++.|-+. + .+-++.+.++|+|.|-+|..+. .++ +.++.++.. .++++.
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~---t----~eea~eal~aGaD~I~LDn~~~---------~~~~~~v~~l~~~~~~v~ie 245 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVD---S----LEQLDAVLPEKPELILLDNFAV---------WQTQTAVQRRDSRAPTVMLE 245 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEES---S----HHHHHHHGGGCCSEEEEETCCH---------HHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC---C----HHHHHHHHHcCCCEEEECCCCH---------HHHHHHHHHhhccCCCeEEE
Confidence 34555555543 225666543 2 3445566679999999986322 222 334444442 368999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++.+ +|+|.+.+|.....-|+
T Consensus 246 aSGGI-t~~~i~~~a~-tGVD~isvG~l~~~a~~ 277 (284)
T 1qpo_A 246 SSGGL-SLQTAATYAE-TGVDYLAVGALTHSVRV 277 (284)
T ss_dssp EESSC-CTTTHHHHHH-TTCSEEECGGGTSSBCC
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEECHHHcCCCC
Confidence 99999 5799988887 79999999987666664
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.11 Score=46.69 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=82.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg-~~~t~~ai~l 98 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILG----------TNAEAFLLTREERAQLIATARKAVGPDFPIMAGVG-AHSTRQVLEH 98 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC-CCCHHHHHHH
Confidence 6677877777 5677999998872 223333334555566677666554 589988752 2467899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCC-CCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNV-RHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI-~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-....+. .+...-+++++.+.+++++||+ +| .|+ -+++.+.++.+
T Consensus 99 a~~a~~~Gadavlv~~P~y~~kp-~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 99 INDASVAGANYVLVLPPAYFGKA-TTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp HHHHHHHTCSEEEECCCCC---C-CCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCC-CCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
Confidence 99999999999977532111000 0001225677888888899986 33 244 57888877776
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.071 Score=47.30 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=71.4
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC------CEEEEeccCCCCcCCCCc-cc
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC------SLLAVHGRTRDEKDGKKF-RA 124 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~------~~I~vh~rt~~~~~~~~~-~~ 124 (287)
..|+..+.+.+++. ++. ..+.||.+|-....+.++....++.+.+.|. +-|++.-|+.. +.+.. ..
T Consensus 112 kIgA~~~~n~~LLr----~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~--y~~~~~~v 184 (288)
T 3tml_A 112 QTPAFLCRQTDFIH----ACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVS--FGYNNLVS 184 (288)
T ss_dssp EECGGGTTCHHHHH----HHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEE--CSSSCEEC
T ss_pred EECcccccCHHHHH----HHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCC--CCCCcCcC
Confidence 45677777777544 433 4689999997665577788888888888887 55655333322 12211 24
Q ss_pred cHHHHHHHHhhCCCcEEEe---------------cCCCCH--HHHHHHHHhcCccEEEEehh
Q 023070 125 DWNAIKAVKNALRIPVLAN---------------GNVRHM--EDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 125 ~~~~i~~i~~~~~ipVi~n---------------GgI~s~--~da~~~l~~~gad~VmiGR~ 169 (287)
|+..+..+++ .++||++. ||-+.. .-+..++. .||||++|=+-
T Consensus 185 dl~~i~~lk~-~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA-~GadGl~iE~H 244 (288)
T 3tml_A 185 DMRSLAIMRE-TNAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVA-TGVAGLFMETH 244 (288)
T ss_dssp CHHHHHHGGG-GSSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHH-HCCSEEEEEEE
T ss_pred CHHHHHHHHh-cCCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHH-cCCCEEEEeec
Confidence 8999999988 89999883 444332 23455565 59999999654
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.18 Score=45.17 Aligned_cols=125 Identities=11% Similarity=0.088 Sum_probs=82.6
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg-~~~t~~ai~l 94 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLG----------ILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVS-APGFAAMRRL 94 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEEST----------GGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECC-CSSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCc----------cCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecC-CCCHHHHHHH
Confidence 36778888777 5678999998872 223333334455566666665554 588888743 2467899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEE-e-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA-N-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~-n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-... .+...-+++++.+.++++ +||+. | |---+++.+.++.+
T Consensus 95 a~~A~~~Gadavlv~~P~~~----~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (313)
T 3dz1_A 95 ARLSMDAGAAGVMIAPPPSL----RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM 160 (313)
T ss_dssp HHHHHHHTCSEEEECCCTTC----CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCCC----CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence 99999999999987532211 111123466788888877 99874 3 44457787777764
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.14 Score=47.12 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=72.8
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC-CEEEEeccCCCCcCCCCccccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~-~~I~vh~rt~~~~~~~~~~~~~~~i~~ 131 (287)
-||.=+++..++.++-+ .+.||.+|.... +.++....++.+.+.|. +.+.+|+.+.-+. .....|+..|..
T Consensus 140 IgS~~~~N~pLL~~va~-----~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPt--p~~~~nL~aI~~ 211 (385)
T 1vli_A 140 IASYEINHLPLLKYVAR-----LNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIMHCVAKYPA--PPEYSNLSVIPM 211 (385)
T ss_dssp ECGGGTTCHHHHHHHHT-----TCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEEEECSSSSC--CGGGCCTTHHHH
T ss_pred ECcccccCHHHHHHHHh-----cCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEEeccCCCCC--ChhhcCHHHHHH
Confidence 35666788887665533 589999997664 77888888888999998 6666786543222 122468899999
Q ss_pred HHhhC-CCcEEEecCCCC-HHHHHHHHHhcCcc
Q 023070 132 VKNAL-RIPVLANGNVRH-MEDVQKCLEETGCE 162 (287)
Q Consensus 132 i~~~~-~ipVi~nGgI~s-~~da~~~l~~~gad 162 (287)
+++.. ++||..++--.. ..-+..++. .||+
T Consensus 212 Lk~~f~~lpVG~SdHt~G~~~~~~AAvA-lGA~ 243 (385)
T 1vli_A 212 LAAAFPEAVIGFSDHSEHPTEAPCAAVR-LGAK 243 (385)
T ss_dssp HHHHSTTSEEEEEECCSSSSHHHHHHHH-TTCS
T ss_pred HHHHcCCCCEEeCCCCCCchHHHHHHHH-cCCC
Confidence 99998 899987764444 566666666 5898
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.22 Score=43.79 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=75.2
Q ss_pred EEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCCC---
Q 023070 13 VQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVFP--- 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g~--- 87 (287)
+-+...|.-. |++++ .|+|.| + .|....++.- |+-..+.-..+.+...+++|++.++. +|.+.+..|.
T Consensus 20 ~~~tayDa~s----A~l~e~aG~d~i-l-vGdSl~~~~l-G~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 92 (275)
T 1o66_A 20 AMLTAYESSF----AALMDDAGVEML-L-VGDSLGMAVQ-GRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQ 92 (275)
T ss_dssp EEEECCSHHH----HHHHHHTTCCEE-E-ECTTHHHHTT-CCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSS
T ss_pred EEEeCcCHHH----HHHHHHcCCCEE-E-ECHHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccC
Confidence 3455566543 55554 599998 4 3655555433 34555556777888888888887764 5777766542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
+.+++++-+.++.++|+++|.+-+.. .-.+.|+.+.+. ++||++
T Consensus 93 s~~~a~~na~rl~kaGa~aVklEdg~----------e~~~~I~al~~a-gIpV~g 136 (275)
T 1o66_A 93 SKEQAFAAAAELMAAGAHMVKLEGGV----------WMAETTEFLQMR-GIPVCA 136 (275)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECSG----------GGHHHHHHHHHT-TCCEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCcH----------HHHHHHHHHHHc-CCCeEe
Confidence 46778888889999999999997641 223567777653 789883
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.36 Score=43.08 Aligned_cols=127 Identities=11% Similarity=0.129 Sum_probs=73.1
Q ss_pred CHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCCCh------
Q 023070 19 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFPNL------ 89 (287)
Q Consensus 19 ~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~~~------ 89 (287)
-|.....+++. .+.|+|.|.+|.. |+ ++.+...++...+.-..|.. |-+-...+.
T Consensus 88 IpnTv~~av~~~a~lGaD~vTVHa~-----------~G-----~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l 151 (303)
T 3ru6_A 88 IPNTMADACEEVSKLGVDMINIHAS-----------AG-----KIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSI 151 (303)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEEGG-----------GC-----HHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHH
T ss_pred CchhHHHHHHHHHhcCCCEEEEecc-----------CC-----HHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH
Confidence 35555556654 4558999999842 21 33444455544332222221 211122221
Q ss_pred ------hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHH----------HH
Q 023070 90 ------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHME----------DV 152 (287)
Q Consensus 90 ------~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~----------da 152 (287)
+....+++...+.|+++++..+ .+ ++.+++.++ -.++..+||+-.. +.
T Consensus 152 ~~~~~~e~V~~lA~~a~~~G~dGvV~s~------------~E---~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~ 216 (303)
T 3ru6_A 152 YRQKIEEAVINFSKISYENGLDGMVCSV------------FE---SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANL 216 (303)
T ss_dssp HSSCHHHHHHHHHHHHHHTTCSEEECCT------------TT---HHHHHHHSCTTSEEEECCCCTTC--------CCSH
T ss_pred HcCCHHHHHHHHHHHHHHcCCCEEEECH------------HH---HHHHHHhCCCccEEECCCcCcccCCcccccccCCH
Confidence 1234677778889999987631 12 345666553 4578889997221 34
Q ss_pred HHHHHhcCccEEEEehhhhhCccch
Q 023070 153 QKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
.++++ .|+|.+++||+++..++-.
T Consensus 217 ~~a~~-aGAd~iVvGr~I~~a~dp~ 240 (303)
T 3ru6_A 217 AMARE-NLSDYIVVGRPIYKNENPR 240 (303)
T ss_dssp HHHHH-TTCSEEEECHHHHTSSCHH
T ss_pred HHHHH-cCCCEEEEChHHhCCCCHH
Confidence 45555 5999999999999866543
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.17 Score=44.89 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCC-EEEEeccCCCCcC--CCCcc--ccHHHHHHHHh
Q 023070 62 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKD--GKKFR--ADWNAIKAVKN 134 (287)
Q Consensus 62 ~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~-~I~vh~rt~~~~~--~~~~~--~~~~~i~~i~~ 134 (287)
+.+.+.+...++.. +.|+.+-+. +.+.++..+.++.+.++|+| +|.+|-....... .+.+. .-++.++.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 77 DYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 33333344433334 688887764 56778899999999999999 9999853222110 01001 12466778888
Q ss_pred hCCCcEEE--ecCCCCHHHH---HHHHHhcCccEEEEe
Q 023070 135 ALRIPVLA--NGNVRHMEDV---QKCLEETGCEGVLSA 167 (287)
Q Consensus 135 ~~~ipVi~--nGgI~s~~da---~~~l~~~gad~VmiG 167 (287)
.+++||++ +.++ +.+++ .+.+++.|+|+|.+.
T Consensus 156 ~~~~Pv~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 156 FFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp TCCSCEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEEC
T ss_pred hcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCcEEEec
Confidence 88899874 5555 55554 445555799998763
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.19 Score=43.00 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=81.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC--
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-- 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-- 87 (287)
+.++.++- ++++..+.++. .+.|.|.|| |. ..|+.+. .+++..++||.=-+|...
T Consensus 72 ~~~v~v~v-~~~ei~~~i~~--~~ld~vQLH-------------G~---E~~~~~~----~l~~~~~~~viKa~~v~~~~ 128 (228)
T 4aaj_A 72 VFLVSTMV-GFSEWAMAIER--TGAQYIQVH-------------SN---ALPQTID----TLKKEFGVFVMKAFRVPTIS 128 (228)
T ss_dssp EEEEECCC-CHHHHHHHHHH--HTCSEEEEC-------------SC---CCHHHHH----HHHHHHCCEEEEEEECCSSC
T ss_pred CEEEeccC-chHHHHHHHHh--ccchheecc-------------cc---cCHHHHH----HHhhccCceEEEEEEecccc
Confidence 34455544 46655444332 367999998 21 3455544 444455677764445432
Q ss_pred C--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+ .++...+...+....+|++.+... +++| ..||+.++.+.. +.|++..||+ +++.+.++++..+..||
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~LlDs~------GGtG~~fDW~~~~~~~~--~~p~iLAGGL-~peNV~~Ai~~~~P~gV 199 (228)
T 4aaj_A 129 KNPEEDANRLLSEISRYNADMVLLDTG------AGSGKLHDLRVSSLVAR--KIPVIVAGGL-NAENVEEVIKVVKPYGV 199 (228)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEEC-------------CCCHHHHHHHH--HSCEEEESSC-CTTTHHHHHHHHCCSEE
T ss_pred cchhhhHHHHHHHHhccCCCEEccCCC------CCCcCcCChHHHHHhhh--cCCeEEECCC-CHHHHHHHHHHhCCCEE
Confidence 1 223444555666778999988632 1122 479998887765 4799999999 57999999987788888
Q ss_pred EEehhhh
Q 023070 165 LSAESLL 171 (287)
Q Consensus 165 miGR~~l 171 (287)
=+..|.=
T Consensus 200 DVsSGVE 206 (228)
T 4aaj_A 200 DVSSGVE 206 (228)
T ss_dssp EESGGGE
T ss_pred EeCCCCC
Confidence 8887763
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.06 Score=50.28 Aligned_cols=95 Identities=7% Similarity=0.038 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-
Q 023070 61 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 137 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~- 137 (287)
++.-.+.++++++++ ++.+.+...-+|+.++++++++.+++.++.+| ++.- .+.||+..+++++.++
T Consensus 205 ~~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~i-------EqPl---~~~d~~~~~~l~~~~~~ 274 (415)
T 2p3z_A 205 IRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWI-------EECL---PPQQYEGYRELKRNAPA 274 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEE-------ECCS---CTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceE-------eCCC---CcchHHHHHHHHHhcCC
Confidence 344556777777765 57788888888999999999999999988776 2211 1358899999998887
Q ss_pred -CcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 138 -IPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 138 -ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+||.+.-.+.+..++.++++.. +|.|.+
T Consensus 275 ~ipIa~dE~~~~~~~~~~~i~~~-~d~i~i 303 (415)
T 2p3z_A 275 GMMVTSGEHHGTLQSFRTLAETG-IDIMQP 303 (415)
T ss_dssp TCEEEECTTCCSHHHHHHHHHTT-CSEECC
T ss_pred CCcEEcCCCCCCHHHHHHHHHcC-CCEEEe
Confidence 8988888899999999999975 998876
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.21 Score=44.06 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=90.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C--
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-- 86 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-- 86 (287)
+.+-++..+.++...| .+.|+|-|||+-+-.. + .+.-. ..+++.+++.+++||-+=+|. |
T Consensus 40 ~~lEvc~~s~~~a~~A---~~gGAdRIELc~~l~~-----G----GlTPS----~g~i~~a~~~~~ipV~vMIRPRgGdF 103 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNA---ERGGADRIELCSGLSE-----G----GTTPS----MGVLQVVKQSVQIPVFVMIRPRGGDF 103 (287)
T ss_dssp SEEEEEESSHHHHHHH---HHHTCSEEEECBCGGG-----T----CBCCC----HHHHHHHHTTCCSCEEEECCSSSSCS
T ss_pred ceEEEEeCCHHHHHHH---HHhCCCEEEECCCCCC-----C----CCCCC----HHHHHHHHHhcCCCeEEEEecCCCCc
Confidence 5688888888775544 3468999999832111 1 11222 244556666678999888887 2
Q ss_pred -CChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecC---CCCHHHHHHHHHh
Q 023070 87 -PNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGN---VRHMEDVQKCLEE 158 (287)
Q Consensus 87 -~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGg---I~s~~da~~~l~~ 158 (287)
.+.. ...+-++.+.++|++.|+++.=+.+. ..|.+.++++.+. -.++|...=- +.++..+.+.+..
T Consensus 104 ~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg------~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li~ 177 (287)
T 3iwp_A 104 LYSDREIEVMKADIRLAKLYGADGLVFGALTEDG------HIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLLT 177 (287)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------CBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC------CcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHHH
Confidence 2222 23456777889999999998655442 4788888777655 3588887765 4568888777776
Q ss_pred cCccEEEEe
Q 023070 159 TGCEGVLSA 167 (287)
Q Consensus 159 ~gad~VmiG 167 (287)
.|+|.|..+
T Consensus 178 lGvdrILTS 186 (287)
T 3iwp_A 178 LGFERVLTS 186 (287)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEECC
Confidence 799999874
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=95.74 E-value=0.069 Score=46.88 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=71.4
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~ 130 (287)
..|+..+++.+++.+ +. ..+.||.+|-...-+.++....++.+...|...+++.-|... +.++ ...|+..+.
T Consensus 99 ~IgA~~~rn~~ll~~----~a-~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~--~~y~~~~~dl~~i~ 171 (267)
T 2nwr_A 99 QIPAFLCRQTDLLLA----AA-KTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTT--FGYNNLVVDFRSLP 171 (267)
T ss_dssp EECGGGTTCHHHHHH----HH-TTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEE--CSSSCEECCTTHHH
T ss_pred EECcccccCHHHHHH----HH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHH
Confidence 457888888885444 43 568999999776557778888888889999866655434322 1221 125777888
Q ss_pred HHHhhCCCcEEEe---------------cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLAN---------------GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~n---------------GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++. + ||++. +|-+. ..-+...+. .|+||+||=+-+
T Consensus 172 ~lk~~-~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava-~Ga~G~mIE~H~ 225 (267)
T 2nwr_A 172 IMKQW-A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVA-VGCDGVFMETHP 225 (267)
T ss_dssp HHTTT-S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHH-HCCSEEEEEEES
T ss_pred HHHHc-C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHH-cCCCEEEEEecC
Confidence 88876 6 99873 33211 223344454 699999997654
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.057 Score=48.54 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=57.9
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++++++.. ..++.|-+. +. +-++.+.++|+|.|-+... +.+.++++.+.+ ++++.
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVd---tl----dea~eAl~aGaD~I~LDn~------------~~~~l~~av~~l~~~v~ie 279 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETE---TL----AELEEAISAGADIIMLDNF------------SLEMMREAVKINAGRAALE 279 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEC---CH----HHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhCCCCeEE
Confidence 34455555443 345555432 22 3344555689999988632 234555555543 68999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++|||. ++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 280 aSGGIt-~~~I~~~a~-tGVD~isvGalt~sa~~ 311 (320)
T 3paj_A 280 NSGNIT-LDNLKECAE-TGVDYISVGALTKHLKA 311 (320)
T ss_dssp EESSCC-HHHHHHHHT-TTCSEEECTHHHHSBCC
T ss_pred EECCCC-HHHHHHHHH-cCCCEEEECceecCCCc
Confidence 999994 788887776 79999999975443443
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.17 Score=44.82 Aligned_cols=162 Identities=15% Similarity=0.225 Sum_probs=92.5
Q ss_pred CCCCEEEEecC------CCHHHHHHHHH-HHcC-CCC-EEEEec-cCCh-h---hhhcCccccccc--------CChHHH
Q 023070 7 EDRPLFVQFCA------NDPEILLNAAR-RVEP-YCD-YVDINL-GCPQ-R---IARRGNYGAFLM--------DNLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g------~~~~~~~~aA~-~~~~-g~d-~IdiN~-gcP~-~---~~~~~~~G~~l~--------~~~~~~ 64 (287)
...|+|+|+.- ...+.+...++ +++. .++ =|-||+ .|.. . ...+.+|.|-+. .+.+..
T Consensus 44 ~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~~p~eeNi~~T 123 (288)
T 3q94_A 44 EKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETT 123 (288)
T ss_dssp TTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHHHHHHHHHTCSEEEECCTTSCHHHHHHHH
T ss_pred hCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHH
Confidence 45799999863 23344444444 3331 222 255554 2322 1 222344544333 233455
Q ss_pred HHHHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++++... ..++.|-.-+.. |. + ..++.+..+.+++.|+|.+.+.=.|.-+.+......|++.+++++
T Consensus 124 k~vv~~ah-~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~ 202 (288)
T 3q94_A 124 KKVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR 202 (288)
T ss_dssp HHHHHHHH-TTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHH-HcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHHHHHH
Confidence 55555543 235555554432 11 0 123445555566899999977433333222222357899999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~ 170 (287)
+.+++|++.-||=.. .+++.++++ .|+--|=|++.+
T Consensus 203 ~~v~vpLVlHGgSG~~~e~i~~ai~-~Gv~KiNi~Tdl 239 (288)
T 3q94_A 203 DFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 239 (288)
T ss_dssp HHHCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred HhcCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEEChHH
Confidence 999999998886443 466788887 689888888765
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.023 Score=54.05 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
...+.++.+.++|++.|.+++-. +. ....|+.++.+++.+ ++||+ .|+|.+.+++..+++ .|+|+|.+|.
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~-----g~-~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~-~Gad~I~vg~ 303 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAH-----GH-SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYD-AGVDVVKVGI 303 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSC-----TT-CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHH-TTCSEEEECS
T ss_pred hHHHHHHHHHHcCCCeEEEeeec-----Cc-chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHH-cCCCEEEECc
Confidence 34677888999999999998621 11 124578889999887 89999 899999999998888 6999999984
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.17 Score=44.73 Aligned_cols=124 Identities=10% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.++- |.+-+. +.+..++++++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg-~~~t~~ai~la 84 (288)
T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNG----------TTGLGPALSKDEKRQNLNALYDVTHK-LIFQVG-SLNLNDVMELV 84 (288)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECC-CSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-eEEeeC-CCCHHHHHHHH
Confidence 37778888777 5678999998872 23444444566668888888877644 655532 23568899999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHH
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKC 155 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~ 155 (287)
+.+++.|+|++-+..-..... .+...-+++++.+.+++++||+ +| .|+ -+++.+.++
T Consensus 85 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 85 KFSNEMDILGVSSHSPYYFPR--LPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HHHHTSCCSEEEECCCCSSCS--CCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HHHHhcCCCEEEEcCCcCCCC--CCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc
Confidence 999999999997753322110 0111224667788888899986 44 243 466666554
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.062 Score=45.61 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=76.7
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCCEEEEec--cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 11 LFVQFCANDPEILLNAARRV-EPYCDYVDINL--GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~--gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
++..|.+.|++.+.+.++.+ +.|+|.|++-+ |.-.++ .....++++++++.++.|+.+-+-..
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~-------------~~~~~~~i~~l~~~~~~~~~v~l~vn- 78 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN-------------ITIGPLVVDSLRPITDLPLDVHLMIV- 78 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC-------------BCCCHHHHHHHGGGCCSCEEEEEESS-
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc-------------cccCHHHHHHHHhccCCcEEEEEEec-
Confidence 67888999999999988865 56899888863 110011 11113666777776666665554221
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc--CCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+..++++.+.++|+++|++|+- ... ...+.++.+++. ++.++..=.-.++.+..+.+. .++|.|.
T Consensus 79 ---d~~~~v~~~~~~Gad~v~vh~~~~~~~--------~~~~~~~~~~~~-g~~ig~~~~p~t~~e~~~~~~-~~~d~vl 145 (230)
T 1rpx_A 79 ---EPDQRVPDFIKAGADIVSVHCEQSSTI--------HLHRTINQIKSL-GAKAGVVLNPGTPLTAIEYVL-DAVDLVL 145 (230)
T ss_dssp ---SHHHHHHHHHHTTCSEEEEECSTTTCS--------CHHHHHHHHHHT-TSEEEEEECTTCCGGGGTTTT-TTCSEEE
T ss_pred ---CHHHHHHHHHHcCCCEEEEEecCccch--------hHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHH-hhCCEEE
Confidence 2445777888999999999965 321 113556666553 444443321224333333333 3799885
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 146 ~ 146 (230)
T 1rpx_A 146 I 146 (230)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.028 Score=52.80 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=57.3
Q ss_pred CCCChhhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEec-CCCCHHHHHHHHHhcC
Q 023070 85 VFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANG-NVRHMEDVQKCLEETG 160 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nG-gI~s~~da~~~l~~~g 160 (287)
.+|+.++++++++.+++ .++.+| ++.- .+.||+..+++++.+ ++||.+.- -+.++.++.++++...
T Consensus 265 ~~~t~~~ai~~~~~L~~~~~i~~i-------EePl---~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a 334 (431)
T 2fym_A 265 KAFTSEEFTHFLEELTKQYPIVSI-------EDGL---DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGI 334 (431)
T ss_dssp EEECHHHHHHHHHHHHHHSCEEEE-------ESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCceEE-------ECCC---CcccHHHHHHHHHHhCCCCeEEeCCcccCCHHHHHHHHHhCC
Confidence 45788889999999988 775444 2211 145899999999988 89998877 7899999999999888
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
+|.|++
T Consensus 335 ~d~i~i 340 (431)
T 2fym_A 335 ANSILI 340 (431)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999988
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.055 Score=45.56 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=62.2
Q ss_pred CcEEEEecCCC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE-------ecCC
Q 023070 77 VPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-------NGNV 146 (287)
Q Consensus 77 ~pv~vKiR~g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~-------nGgI 146 (287)
+-|+|-...+. +...+.++++.++++|++++.+. ..+.++.+++.+++|+++ .+++
T Consensus 7 ~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~--------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~ 72 (223)
T 1y0e_A 7 LIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN--------------TKEDILAIKETVDLPVIGIVKRDYDHSDV 72 (223)
T ss_dssp EEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHHHCCSCEEEECBCCCTTCCC
T ss_pred eEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC--------------CHHHHHHHHHhcCCCEEeeeccCCCcccc
Confidence 44555554443 34567899999999999998662 136688999999999974 3455
Q ss_pred ---CCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 147 ---RHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 147 ---~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+.+++..+++ .|+|.|.++.....+|
T Consensus 73 ~i~~~~~~i~~~~~-~Gad~v~l~~~~~~~p 102 (223)
T 1y0e_A 73 FITATSKEVDELIE-SQCEVIALDATLQQRP 102 (223)
T ss_dssp CBSCSHHHHHHHHH-HTCSEEEEECSCSCCS
T ss_pred ccCCcHHHHHHHHh-CCCCEEEEeeecccCc
Confidence 56778888877 5999999998887777
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.18 Score=44.48 Aligned_cols=122 Identities=19% Similarity=0.100 Sum_probs=79.8
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.++- |.+-+. +.+..+++++++
T Consensus 17 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~la~ 84 (286)
T 2r91_A 17 DPELFANHVKNITSKGVDVVFVAG----------TTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIALAK 84 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHHHHH
Confidence 7777888777 5678999998872 23334444555567777777766643 665542 235688999999
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHH
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQK 154 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~ 154 (287)
.+++.|+|++-+..-.... ..+...-+++++.+.+++++||+ +| .|+ -+++.+.+
T Consensus 85 ~A~~~Gadavlv~~P~y~~--~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 85 YAESRGAEAVASLPPYYFP--RLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HHHHTTCSEEEECCSCSST--TCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HHHhcCCCEEEEcCCcCCC--CCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh
Confidence 9999999999876332211 00111224667788888899986 44 233 46777766
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.12 Score=49.48 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC-----------------------C--cC--C---------
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------------------E--KD--G--------- 119 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~-----------------------~--~~--~--------- 119 (287)
+.|.++.+-.+.+.+...+++++++++|+++|.||--... . .. .
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~ 325 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence 3566666654555566678888899999998877621110 0 00 0
Q ss_pred CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
......|+.++.+++.+++||++- |+.+++++..+.+ .|+|+|.++
T Consensus 326 ~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~-aGad~I~vs 371 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKKTKLPIVIK-GVQRTEDVIKAAE-IGVSGVVLS 371 (511)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEE-EECSHHHHHHHHH-TTCSEEEEC
T ss_pred cChHhHHHHHHHHHHHhCCcEEEE-eCCCHHHHHHHHH-cCCCEEEEc
Confidence 011235899999999999999986 4667999988877 699999983
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.025 Score=54.18 Aligned_cols=70 Identities=16% Similarity=0.314 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
+..+.++.+.++|++.|.+|.... .+ ...++.++.+++.+ ++||++ |++.+.+++..+.+ .|+|+|.+|.
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~G-----~~-~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~-aGad~I~vg~ 325 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQG-----NS-VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLID-AGVDGLRVGM 325 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCC-----CS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred hhHHHHHHHHHcCCCEEEeeccCC-----cc-hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHH-cCCCEEEECC
Confidence 456778889999999999975421 11 23468899999988 899986 78999999998887 5999998854
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.068 Score=49.81 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcc--CCcEEEEecC------CCChhhHHHHHHHHHHcCCCE-EEEeccCCCCcCC-CCccccHHHHHHHH
Q 023070 64 VKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDG-KKFRADWNAIKAVK 133 (287)
Q Consensus 64 ~~~iv~~v~~~~--~~pv~vKiR~------g~~~~~~~~~a~~l~~~G~~~-I~vh~rt~~~~~~-~~~~~~~~~i~~i~ 133 (287)
..+.+++|++.+ ++.+.+...- +|+.++++++++.+++.|+.. +-+ ++.-. ...+.||+.+++++
T Consensus 218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~i-----EqP~~~~~~~~d~~~~~~l~ 292 (413)
T 1kko_A 218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAIT 292 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEE-----ECCcCCCCCcccHHHHHHHH
Confidence 447888998877 4777787777 789999999999999976541 111 21110 00035888899999
Q ss_pred hh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 134 NA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 134 ~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+. +++||.+.=.+.+++++.++++...+|.|.+
T Consensus 293 ~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~i 330 (413)
T 1kko_A 293 KELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQI 330 (413)
T ss_dssp HHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 88 8899999889999999999999878999988
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.059 Score=47.79 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=67.5
Q ss_pred HHHHHHHhh-ccCCcEEEEecCCCChhhHHHHHHHHHH-cCCCEEEEeccCCCCcC---CCCcc--ccHHHHHHHHhhCC
Q 023070 65 KSLVEKLAL-NLNVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKD---GKKFR--ADWNAIKAVKNALR 137 (287)
Q Consensus 65 ~~iv~~v~~-~~~~pv~vKiR~g~~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~---~~~~~--~~~~~i~~i~~~~~ 137 (287)
.++++.+++ ..+.|+.+-+.. .+.++..+.++.+.+ .|+|+|.+|-....... .+... .-.+.++.+++.++
T Consensus 86 ~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~ 164 (311)
T 1ep3_A 86 TEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSK 164 (311)
T ss_dssp HTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcC
Confidence 335566665 337888887753 356778888888888 99999999843221100 00001 12577888888888
Q ss_pred CcEEE--ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 138 IPVLA--NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 138 ipVi~--nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+||++ +.++.+..++.+.+++.|+|+|.+
T Consensus 165 ~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 165 VPLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp SCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence 99875 346777777656666689999988
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.035 Score=46.50 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcE-EEecCCCCHHHHHH
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV-LANGNVRHMEDVQK 154 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipV-i~nGgI~s~~da~~ 154 (287)
..|+..-++ +.+.++..+.++.+.+.|++.|.+...+ +...+.++++++..++|+ ++.|++.+.+++..
T Consensus 6 ~~~i~~~i~-~~d~~~~~~~~~~~~~~G~~~i~l~~~~---------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~ 75 (212)
T 2v82_A 6 KLPLIAILR-GITPDEALAHVGAVIDAGFDAVEIPLNS---------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDA 75 (212)
T ss_dssp SSCEEEECT-TCCHHHHHHHHHHHHHHTCCEEEEETTS---------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHH
T ss_pred CCCEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHH
Confidence 456655554 4567888999999999999999885332 123567777777666664 46688999999998
Q ss_pred HHHhcCccEEEEehhhhhCccchh
Q 023070 155 CLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+++ .|+|+|.+|. .++.+..
T Consensus 76 a~~-~Gad~V~~~~---~~~~~~~ 95 (212)
T 2v82_A 76 LAR-MGCQLIVTPN---IHSEVIR 95 (212)
T ss_dssp HHH-TTCCEEECSS---CCHHHHH
T ss_pred HHH-cCCCEEEeCC---CCHHHHH
Confidence 888 6999998764 2444443
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.023 Score=54.39 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+.++.+.++|++.|.++..... ....++.++++++.. ++||++ |++.+.+++..+.+ .|||+|.+|
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~-aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIE-AGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHH-hCCCEEEEC
Confidence 34567788999999999999854321 123468899999887 789988 88999999998887 599999986
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.18 Score=42.99 Aligned_cols=136 Identities=9% Similarity=-0.012 Sum_probs=77.3
Q ss_pred CEEEEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC---
Q 023070 10 PLFVQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--- 85 (287)
Q Consensus 10 p~~~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--- 85 (287)
+++.=+=-+ -|.....+++.+... |.+.+|.. |+. .+.+...++...+. +.-|++=..+
T Consensus 55 ~VflDlK~~DI~nTv~~~~~~~~~~-d~vTVh~~-----------~G~----~~~~~~a~~~~~~~-~~~v~vLts~s~~ 117 (222)
T 4dbe_A 55 EIIVDFKLADIGYIMKSIVERLSFA-NSFIAHSF-----------IGV----KGSLDELKRYLDAN-SKNLYLVAVMSHE 117 (222)
T ss_dssp EEEEEEEECSCHHHHHHHHTTCTTC-SEEEEEST-----------TCT----TTTHHHHHHHHHHT-TCEEEEEEECSST
T ss_pred eEEEEeeecchHHHHHHHHHHHHhC-CEEEEEcC-----------cCc----HHHHHHHHHHHHhc-CCcEEEEEeCCCc
Confidence 455444333 345555555544334 89999842 220 12233334433221 2334433233
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHH-HHHHHHHhcCccEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME-DVQKCLEETGCEGV 164 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~-da~~~l~~~gad~V 164 (287)
++.......+++...++|++++++.+. .-+.++.+++.++-.++..+||+--. +..++++ .|+|.+
T Consensus 118 ~~~~~~~~~~a~~a~~~g~~GvV~sat------------~p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~~-~Gad~i 184 (222)
T 4dbe_A 118 GWSTLFADYIKNVIREISPKGIVVGGT------------KLDHITQYRRDFEKMTIVSPGMGSQGGSYGDAVC-AGADYE 184 (222)
T ss_dssp TCCCTTHHHHHHHHHHHCCSEEEECTT------------CHHHHHHHHHHCTTCEEEECCBSTTSBCTTHHHH-HTCSEE
T ss_pred chHHHHHHHHHHHHHHhCCCEEEECCC------------CHHHHHHHHHhCCCCEEEcCCcccCccCHHHHHH-cCCCEE
Confidence 221223467888889999999977532 11345666666543677889887421 4555666 599999
Q ss_pred EEehhhhhCcc
Q 023070 165 LSAESLLENPA 175 (287)
Q Consensus 165 miGR~~l~nP~ 175 (287)
+|||+++.-++
T Consensus 185 VVGR~I~~A~d 195 (222)
T 4dbe_A 185 IIGRSIYNAGN 195 (222)
T ss_dssp EECHHHHTSSS
T ss_pred EECHHhcCCCC
Confidence 99999997554
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.15 Score=44.86 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=90.9
Q ss_pred HHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC--ChhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~--~~~~~~~~a~~l~~~ 102 (287)
|++++ .|||+|=+- .+.- . .-|+-....-..+.+...+++|.+.++.||++.+-.|+ +..+..+.++.+.++
T Consensus 29 A~~~~~aG~~ai~vsg~s~a--~--~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~a 104 (275)
T 2ze3_A 29 ARLLEAAGFTAIGTTSAGIA--H--ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAAL 104 (275)
T ss_dssp HHHHHHHTCSCEEECHHHHH--H--HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECcHHHH--H--hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHc
Confidence 44443 489888775 2211 1 12333333456677778888888888999999999985 456888999999999
Q ss_pred CCCEEEEeccCCC-CcCCCCccccHHHHHHHHhh---CCCcEEEecCCCC--------H-HHHHHHH------HhcCccE
Q 023070 103 GCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRH--------M-EDVQKCL------EETGCEG 163 (287)
Q Consensus 103 G~~~I~vh~rt~~-~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s--------~-~da~~~l------~~~gad~ 163 (287)
|+.+|.+-+.... .+.-.+...-.+.|+.+++. .++|+..+|.... + +.+.+++ .+.|||+
T Consensus 105 Gaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~ 184 (275)
T 2ze3_A 105 GVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADG 184 (275)
T ss_dssp TCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCE
Confidence 9999999765431 11111101112445555444 2678777775544 1 2233333 3369999
Q ss_pred EEEehhhhhCccchhchh
Q 023070 164 VLSAESLLENPALFAGFR 181 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~ 181 (287)
|++= .+.++...+++.
T Consensus 185 i~~e--~~~~~~~~~~i~ 200 (275)
T 2ze3_A 185 IFVP--LALQSQDIRALA 200 (275)
T ss_dssp EECT--TCCCHHHHHHHH
T ss_pred EEEC--CCCCHHHHHHHH
Confidence 9883 245556666554
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.21 Score=44.26 Aligned_cols=123 Identities=16% Similarity=-0.015 Sum_probs=81.2
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.++- |.+-+. +.+..++++++
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~la 84 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIRLA 84 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHHHH
Confidence 36777888777 5677999998872 23434444566667888888777644 665542 24568899999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHH
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQK 154 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~ 154 (287)
+.+++.|+|++-+..-..... .+...-+++++.+.+++++||+ +| .|+ -+++.+.+
T Consensus 85 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 85 KLSKDFDIVGIASYAPYYYPR--MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp HHGGGSCCSEEEEECCCSCSS--CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence 999999999997763322110 0111224667788888899986 44 243 47777766
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.11 Score=45.85 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=68.8
Q ss_pred CHHHHHH-HHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----------
Q 023070 19 DPEILLN-AARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----------- 85 (287)
Q Consensus 19 ~~~~~~~-aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----------- 85 (287)
++++..+ |.++++ .|+++|.|=-| ....+.|+++.++ ++||.--+.+
T Consensus 110 s~~~a~~na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf 169 (281)
T 1oy0_A 110 GPTAALAAATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGF 169 (281)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC---------
T ss_pred CHHHHHHHHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCe
Confidence 6777666 556666 69999998632 1234444555433 6887632222
Q ss_pred ---CCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 ---FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 ---g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|-+ .+++++-++.++++|++.|.+.+.. -+..+++.+.+++|+|+-|.= .+
T Consensus 170 ~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp------------~~~a~~it~~l~iP~igIGaG------------~~ 225 (281)
T 1oy0_A 170 RVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVP------------AELATQITGKLTIPTVGIGAG------------PN 225 (281)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESSC------------SC
T ss_pred EEEeCcHHHHHHHHHHHHHHHcCCcEEEEecCC------------HHHHHHHHHhCCCCEEEeCCC------------CC
Confidence 112 2456777888999999999997541 156788999999999987642 36
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
|||-++-
T Consensus 226 ~dgQvLV 232 (281)
T 1oy0_A 226 CDGQVLV 232 (281)
T ss_dssp SSEEEEC
T ss_pred CCcceee
Confidence 8886543
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.11 Score=44.09 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=65.7
Q ss_pred HHHHHHHhhccCCcEEEEecCCC---Chh--hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 65 KSLVEKLALNLNVPVSCKIRVFP---NLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g~---~~~--~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
.++++.+ .-++++++....+. +.+ +..++++.+++.|++++.+. ..+.++.+++.+++|
T Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~--------------~~~~i~~i~~~~~~p 71 (234)
T 1yxy_A 8 EKLMEQL--KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN--------------SVRDIKEIQAITDLP 71 (234)
T ss_dssp HHHHHHH--TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHTTCCSC
T ss_pred HHHHHHH--hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC--------------CHHHHHHHHHhCCCC
Confidence 3466666 33566666654321 245 77899999999999998763 125688898889999
Q ss_pred EEEe-------cCC---CCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 140 VLAN-------GNV---RHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 140 Vi~n-------GgI---~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+++. +++ .+.+++..+++ .|+|.|.++-....+|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~~~i~~~~~-~Gad~V~l~~~~~~~~ 115 (234)
T 1yxy_A 72 IIGIIKKDYPPQEPFITATMTEVDQLAA-LNIAVIAMDCTKRDRH 115 (234)
T ss_dssp EEEECBCCCTTSCCCBSCSHHHHHHHHT-TTCSEEEEECCSSCCT
T ss_pred EEeeEcCCCCccccccCChHHHHHHHHH-cCCCEEEEcccccCCC
Confidence 9641 222 35577777776 6999999998887777
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.048 Score=51.56 Aligned_cols=117 Identities=14% Similarity=0.036 Sum_probs=87.0
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEE
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA 108 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~ 108 (287)
+.||..+.+.++.... .|. .+++.-.+.++++|+++ ++++.+...-+|+..+++++++.+++.++.+|
T Consensus 178 ~~Gf~~~KlKv~~~~~------~G~---~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l~~i- 247 (455)
T 3fxg_A 178 AMGFWGGKVPLPFCPD------DGH---EGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNINWW- 247 (455)
T ss_dssp HHTCSCEEEECCCCGG------GHH---HHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCCSEE-
T ss_pred HcCCCEEEEcCCCCcc------ccc---ccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCccee-
Confidence 4588888777542110 011 23455667788888877 58899998889999999999999999998777
Q ss_pred EeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 109 VHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 109 vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.- .+.|++.++++++.+ .+||.+.=.+.+..++.++++...+|.|++
T Consensus 248 ------EEPl---~~dd~~~la~L~~~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~ 297 (455)
T 3fxg_A 248 ------EECL---SPDDTDGFALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQP 297 (455)
T ss_dssp ------ECCS---CGGGGGGHHHHHHHCTTSEEEECTTCCHHHHHHHHHTTCCCSEECC
T ss_pred ------cCCC---CcchHHHHHHHHHhCCCCeEECCCccCCHHHHHHHHHcCCCCEEEE
Confidence 2211 134677888898876 488888888999999999998778888876
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.05 Score=48.24 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++++++.. ..++.|-+. +. +-++.+.++|+|.|-+..- +.+.++++.+.+ ++++.
T Consensus 186 ~~Av~~ar~~~~~~~IeVEv~---tl----~ea~eAl~aGaD~I~LDn~------------~~~~l~~av~~~~~~v~ie 246 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVEVT---NL----DELNQAIAAKADIVMLDNF------------SGEDIDIAVSIARGKVALE 246 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEEES---SH----HHHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHhhCCCCcEEEEeC---CH----HHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhhcCCceEE
Confidence 34455555432 456666432 22 3345566789999988732 124455554443 68999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 247 aSGGI-t~~~i~~~a~-tGVD~IsvGalt~sa~~ 278 (287)
T 3tqv_A 247 VSGNI-DRNSIVAIAK-TGVDFISVGAITKHIKA 278 (287)
T ss_dssp EESSC-CTTTHHHHHT-TTCSEEECSHHHHSBCC
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEEChhhcCCcc
Confidence 99999 5688888777 79999999865554444
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.041 Score=50.61 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=57.1
Q ss_pred ccCCcEEEEecC----C-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccc-----cHHHHHHHHhhCCCcEEEe
Q 023070 74 NLNVPVSCKIRV----F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-----DWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 74 ~~~~pv~vKiR~----g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~-----~~~~i~~i~~~~~ipVi~n 143 (287)
+.+.|+..-+.. + ++.+...+.++ ..+++++.+|=-....--...+.. .++.++.+++.+++||++=
T Consensus 117 ap~~~~~anlg~~ql~~~~~~~~~~~av~---~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK 193 (368)
T 3vkj_A 117 APTIPIIANLGMPQLVKGYGLKEFQDAIQ---MIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVK 193 (368)
T ss_dssp CSSSCEEEEEEGGGGGTTCCHHHHHHHHH---HTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEE
T ss_pred CcCcceecCcCeeecCCCCCHHHHHHHHH---HhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEE
Confidence 446788777665 3 55554444343 446777777722110000001112 4678999999999999984
Q ss_pred --cCCCCHHHHHHHHHhcCccEEEE
Q 023070 144 --GNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 144 --GgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+-.+++++..+.+ .|+|+|.+
T Consensus 194 ~vG~g~s~~~A~~l~~-aGad~I~V 217 (368)
T 3vkj_A 194 ESGNGISMETAKLLYS-YGIKNFDT 217 (368)
T ss_dssp CSSSCCCHHHHHHHHH-TTCCEEEC
T ss_pred eCCCCCCHHHHHHHHh-CCCCEEEE
Confidence 55568999998887 69999988
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.38 Score=43.70 Aligned_cols=126 Identities=18% Similarity=0.119 Sum_probs=81.4
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++. ...-.+||.+-+.. .+..++++++
T Consensus 44 ID~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg~-~st~eai~la 111 (344)
T 2hmc_A 44 PDFDALVRKGKELIADGMSAVVYCG----------SMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTGA-VNTASAVAHA 111 (344)
T ss_dssp BCHHHHHHHHHHHHHTTCCCEEESS----------GGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECCC-SSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCc----------cCcChhhCCHHHHHHHHHH-HhCCCCcEEEecCC-CCHHHHHHHH
Confidence 36677877777 5678999998872 2233333344444566665 22236899888532 4568899999
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCCCcEE-Ee----cCCCCHHHHHHH-HH
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVL-AN----GNVRHMEDVQKC-LE 157 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipVi-~n----GgI~s~~da~~~-l~ 157 (287)
+.+++.|+|++.+..-..... .+...-+++++.|.+ ++++||+ +| |---+++.+.++ .+
T Consensus 112 ~~A~~~Gadavlv~~P~y~~~--~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~ 177 (344)
T 2hmc_A 112 VHAQKVGAKGLMVIPRVLSRG--SVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAE 177 (344)
T ss_dssp HHHHHHTCSEEEECCCCSSST--TCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCccCCC--CCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhc
Confidence 999999999997753222110 001123467788888 7899976 45 433578888887 54
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.1 Score=48.88 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=70.1
Q ss_pred CChHHHHHHHHHHhhc---c--CCcEEEEec--------------CCCChhhHHHHHHH-HHHcCCCEEEEeccCCCCcC
Q 023070 59 DNLPLVKSLVEKLALN---L--NVPVSCKIR--------------VFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKD 118 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~---~--~~pv~vKiR--------------~g~~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~ 118 (287)
.+.+.+.-++++|+++ + ++.+.+..- -+|+.++++++++. +++.++.+| ++.-
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~I-------EdPl 288 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISI-------EDGL 288 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEE-------ECCS
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceE-------eCCC
Confidence 3445556668899887 5 466666551 35788889999997 788886554 2111
Q ss_pred CCCccccHHHHHHHHhhCCCcEEEecC---CCCHHHHHHHHHhcCccEEEE
Q 023070 119 GKKFRADWNAIKAVKNALRIPVLANGN---VRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~~ipVi~nGg---I~s~~da~~~l~~~gad~Vmi 166 (287)
.+.||+..+++++.++.||-..|+ ++++.++.+.++...||.|.+
T Consensus 289 ---~~dD~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~i 336 (428)
T 3tqp_A 289 ---SENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILV 336 (428)
T ss_dssp ---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred ---CcccHHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEe
Confidence 146899999999988766644454 459999999999878899877
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.015 Score=52.33 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
..+|+.+.+.++.. .||..+.+..|.+ +++.-.+.++++++.+ ++.+.+..+-+|+.+++.++
T Consensus 113 ~~~~~~~~~~a~~~-~G~~~~KiKvG~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 176 (322)
T 1r6w_A 113 NGDPDDLILKLADM-PGEKVAKVRVGLY---------------EAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQF 176 (322)
T ss_dssp CSCHHHHHHHHHTC-CSSEEEEEECSSS---------------CHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHh-CCCceEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHH
Confidence 56888887766543 6899999886531 3566667788888776 45566666678998899999
Q ss_pred HHHHHHc---CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~---G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++. ++.+| ++. . .+++..+++++.+++||.+.-.+.+.+ . ..++..++|.|++
T Consensus 177 ~~~l~~~~~~~i~~i-------EqP----~-~~~~~~~~l~~~~~ipIa~dE~~~~~~-~-~~~~~~a~d~i~i 236 (322)
T 1r6w_A 177 AKYVNPDYRDRIAFL-------EEP----C-KTRDDSRAFARETGIAIAWDESLREPD-F-AFVAEEGVRAVVI 236 (322)
T ss_dssp HHTSCTTTGGGEEEE-------ECC----B-SSHHHHHHHHHHHCCCEEESGGGGSTT-C-CCCCCTTEEEEEE
T ss_pred HHHhhhhccCCeeEE-------ECC----C-CChHHHHHHHHhCCCCEEeCCCCCChh-H-hhhhcCCCCEEEE
Confidence 9988876 55544 211 1 246778888888899999988888854 4 4445456777776
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.32 Score=43.37 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCCH-----HHHHHHHHHHcCCCC-EEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHHH
Q 023070 7 EDRPLFVQFCANDP-----EILLNAARRVEPYCD-YVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-----~~~~~aA~~~~~g~d-~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
...|+|+|+.-... +.+...++.+.. ++ =|-||+ .|.. . ...+.+|.|-+.+ +.+..+++
T Consensus 40 ~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GFtSVMiDgS~~p~eENi~~Tk~v 118 (305)
T 1rvg_A 40 QRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRV 118 (305)
T ss_dssp TTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred hCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCCCeeeeCCCCCCHHHHHHHHHHH
Confidence 46799999965332 222233332222 32 255554 2322 1 2223556554432 34455555
Q ss_pred HHHHhhccCCcEEEEecC-C--CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCccccHHHHHHH
Q 023070 68 VEKLALNLNVPVSCKIRV-F--PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAV 132 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g--~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~~~~i~~i 132 (287)
++.... .++.|-.-+.. | .+ ..++.+..+.+++.|+|.+.+.=.|.-+.+. .....+++.++++
T Consensus 119 v~~ah~-~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I 197 (305)
T 1rvg_A 119 VEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERI 197 (305)
T ss_dssp HHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHH
T ss_pred HHHHHH-cCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccCHHHHHHH
Confidence 555432 35555544432 1 11 1234455555567899999874333333222 2235789999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
++.+++|++.-||=.=|++..+.+.+.|-+
T Consensus 198 ~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~ 227 (305)
T 1rvg_A 198 ARLVPAPLVLHGASAVPPELVERFRASGGE 227 (305)
T ss_dssp HHHCCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred HHhcCCCEEEeCCCCCcHHHHHHHHhhccc
Confidence 999999999999877778888787776654
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=95.34 E-value=0.093 Score=46.76 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=51.7
Q ss_pred CCCEEEEecCCCH------------HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 8 DRPLFVQFCANDP------------EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 8 ~~p~~~Qi~g~~~------------~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
.+|.|.=|.--.| +...+-|+ .+++|+|.||||.-+--+ +.-.-+.....+.+..+++++++.
T Consensus 38 ~~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP----ga~~v~~~eE~~RvvpvI~~l~~~ 113 (297)
T 1tx2_A 38 EKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRP----GFAKVSVEEEIKRVVPMIQAVSKE 113 (297)
T ss_dssp SSCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC--------CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4566655554333 44444444 667899999999644111 111111223344566666888877
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEE
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 107 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I 107 (287)
+++||+|... + .+.++...++|++.|
T Consensus 114 ~~vpiSIDT~---~----~~V~~aAl~aGa~iI 139 (297)
T 1tx2_A 114 VKLPISIDTY---K----AEVAKQAIEAGAHII 139 (297)
T ss_dssp SCSCEEEECS---C----HHHHHHHHHHTCCEE
T ss_pred CCceEEEeCC---C----HHHHHHHHHcCCCEE
Confidence 7999999842 1 234555556688777
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.069 Score=47.27 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEec-cCCCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~-rt~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
..|+.+-++. .++++.+.+.|++.|.+-. ...+.. .+.....+.+.++++++.+++|++.+.++.+.+++
T Consensus 21 ~~~~i~~~~~-------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~ 93 (297)
T 2zbt_A 21 KGGVIMDVTT-------PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEA 93 (297)
T ss_dssp TTEEEEEESS-------HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHH
T ss_pred hCCeeeeech-------HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHH
Confidence 4466555433 6889999999999998721 000000 01011245788999999999999999888888888
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+.+++ .|||+| .+......|.+++.++.
T Consensus 94 ~~~~~-aGad~v-~~~~~~~~~~~~~~~~~ 121 (297)
T 2zbt_A 94 MILEA-IGVDFI-DESEVLTPADEEHHIDK 121 (297)
T ss_dssp HHHHH-TTCSEE-EEETTSCCSCSSCCCCG
T ss_pred HHHHH-CCCCEE-eeeCCCChHHHHHHHHH
Confidence 88887 699999 44433344566665543
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.043 Score=52.22 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.+.++|++.|.++.... . ....|+.++.+++.+ ++||++ |++.+++++..+.+ .|+|+|.+|-
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G-----~-~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~-~G~d~I~v~~ 307 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHG-----H-SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIK-AGADAVKVGV 307 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC-----S-SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHH-TTCSEEEECS
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCC-----c-hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHH-cCCCEEEEcC
Confidence 4456788889999999999974311 1 124678899999987 799887 77889999987777 6999999853
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.23 Score=51.49 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=72.1
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC--CC--C----ccccHHHHHHHHhh
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD--GK--K----FRADWNAIKAVKNA 135 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~--~~--~----~~~~~~~i~~i~~~ 135 (287)
.+-+..+++.. +.|+.+-+-.+.+.++..+.+++++++|+|+|.+|........ .+ . ...-++.++.+++.
T Consensus 622 ~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~ 701 (1025)
T 1gte_A 622 CQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA 701 (1025)
T ss_dssp HHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh
Confidence 33345555544 6788888777778888999999999999999999854332211 00 0 01235678888888
Q ss_pred CCCcEE--EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 136 LRIPVL--ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 136 ~~ipVi--~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+++||+ ...++.+..++.+.+.+.|+|+|.+
T Consensus 702 ~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v 734 (1025)
T 1gte_A 702 VQIPFFAKLTPNVTDIVSIARAAKEGGADGVTA 734 (1025)
T ss_dssp CSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred hCCceEEEeCCChHHHHHHHHHHHHcCCCEEEE
Confidence 899988 4567777777777776789999988
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.25 Score=43.62 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=86.1
Q ss_pred CCHHHHHHHH---HH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAA---RR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA---~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~ 93 (287)
.+.+++.... +. .+.|+|+|-+.+.-|- | .-|.+.+.++++... ..++++- |......+..
T Consensus 105 Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~d--------g---~iD~~~~~~Li~~a~---~l~vTFH-RAFD~~~d~~ 169 (287)
T 3iwp_A 105 YSDREIEVMKADIRLAKLYGADGLVFGALTED--------G---HIDKELCMSLMAICR---PLPVTFH-RAFDMVHDPM 169 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT--------S---CBCHHHHHHHHHHHT---TSCEEEC-GGGGGCSCHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCC--------C---CcCHHHHHHHHHHcC---CCcEEEE-CchhccCCHH
Confidence 4555555443 32 3569999987654343 1 136778888888653 4677765 2322223456
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEE-Eehhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVL-SAESL 170 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~Vm-iGR~~ 170 (287)
+..+.+.+.|++.|-.+|.... ....++.++++.+.. +++|++.|||+ ++.+.++++.+|++-+= .++..
T Consensus 170 ~Ale~Li~lGvdrILTSG~~~~------a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l~~~tG~~~~H~S~~~~ 242 (287)
T 3iwp_A 170 AALETLLTLGFERVLTSGCDSS------ALEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRILEGSGATEFHCSARST 242 (287)
T ss_dssp HHHHHHHHHTCSEEEECTTSSS------TTTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHHHHHHCCSEEEECCEEE
T ss_pred HHHHHHHHcCCCEEECCCCCCC------hHHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHHHHhhCCCEEeECcCcc
Confidence 6677888889999977765222 134567777776643 59999999996 48888888878999884 34444
Q ss_pred h
Q 023070 171 L 171 (287)
Q Consensus 171 l 171 (287)
.
T Consensus 243 ~ 243 (287)
T 3iwp_A 243 R 243 (287)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.42 Score=42.29 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=93.2
Q ss_pred CCCEEEEecCCC-----HHHHHHHHHH-HcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHHH
Q 023070 8 DRPLFVQFCAND-----PEILLNAARR-VEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 8 ~~p~~~Qi~g~~-----~~~~~~aA~~-~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
..|+|+|+.-+. .+.+...++. ++. .+. |-||+ .|.. . ...+.+|.|-+.+ +.+..+++
T Consensus 42 ~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VP-ValHlDHg~~~e~i~~ai~~GFtSVMiDgS~lp~eeNi~~Tk~v 120 (286)
T 1gvf_A 42 RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMP-LALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSV 120 (286)
T ss_dssp TCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSC-BEEEEEEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCc-EEEEcCCCCCHHHHHHHHHcCCCeEEECCCCCCHHHHHHHHHHH
Confidence 579999997654 2444555543 232 332 45553 2322 1 2223456554432 34455555
Q ss_pred HHHHhhccCCcEEEEecC-C--CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh
Q 023070 68 VEKLALNLNVPVSCKIRV-F--PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 134 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g--~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~ 134 (287)
++.... .++.|-.-+.. | .+ ..++.+..+.+++.|+|.+.+.=.|.-+.+......|++.++++++
T Consensus 121 v~~ah~-~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~ 199 (286)
T 1gvf_A 121 VDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE 199 (286)
T ss_dssp HHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHH
T ss_pred HHHHHH-cCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHHHHHHHHH
Confidence 555442 25555544432 1 10 1234455555668999999874333333222233578999999999
Q ss_pred hCCCcEEEecCCC-CHHHHHHHHHhcCccEEEEehhh
Q 023070 135 ALRIPVLANGNVR-HMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 135 ~~~ipVi~nGgI~-s~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++|++.-||=. +.+++.++++ .|+--|=|++.+
T Consensus 200 ~~~vpLVlHGgSG~~~e~i~~ai~-~Gv~KiNi~Tdl 235 (286)
T 1gvf_A 200 VVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATEL 235 (286)
T ss_dssp HCCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred hcCCCEEEECCCCCCHHHHHHHHH-CCCeEEEEChHH
Confidence 9999999888543 3466788887 689888887765
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.083 Score=47.17 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=53.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHh---hccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA---LNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~---~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+-|+ .+++|+|.||||+|.+ .....+.+.+++..+. +..++||++... + .+
T Consensus 35 ~~~~a~~~A~~~v~~GAdiIDIg~g~~------------~v~~~eem~rvv~~i~~~~~~~~vpisIDT~------~-~~ 95 (300)
T 3k13_A 35 KYDEALSIARQQVEDGALVIDVNMDDG------------LLDARTEMTTFLNLIMSEPEIARVPVMIDSS------K-WE 95 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCT------------TSCHHHHHHHHHHHHHTCHHHHTSCEEEECS------C-HH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHHhhhcCCCeEEEeCC------C-HH
Confidence 4455555555 6788999999997532 2233445555555554 456899999842 1 23
Q ss_pred HHHHHHH--cCCCEE-EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 95 YAKMLED--AGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 95 ~a~~l~~--~G~~~I-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
.++...+ .|++.| .|++-.. ...++.+..+....+.|||+
T Consensus 96 V~eaaL~~~~Ga~iINdIs~~~~--------d~~~~~~~~l~a~~ga~vV~ 138 (300)
T 3k13_A 96 VIEAGLKCLQGKSIVNSISLKEG--------EEVFLEHARIIKQYGAATVV 138 (300)
T ss_dssp HHHHHHHHCSSCCEEEEECSTTC--------HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCCEEEeCCcccC--------ChhHHHHHHHHHHhCCeEEE
Confidence 3444444 577765 3433211 12333344444445667664
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.19 Score=45.24 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=84.0
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHH-HHcCCCC-EEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAAR-RVEPYCD-YVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~-~~~~g~d-~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+. .+.+..+++ .++.+++ =|-||+ .|.. ....+.+|.|-+.+ +.+..++
T Consensus 41 ~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~~p~eENi~~Tk~ 120 (323)
T 2isw_A 41 LKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASHHPFDENVRITKE 120 (323)
T ss_dssp TTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred hCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHH
Confidence 4679999996532 123333333 2332222 255664 2322 12223456554432 3344555
Q ss_pred HHHHHhhccCCcEEEEecC--C-CC-------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCcc--ccHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--F-PN-------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFR--ADWNAIKAV 132 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g-~~-------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~--~~~~~i~~i 132 (287)
+++.... .++.|-.-+.. | .+ ..++.+..+.+++.|+|.+.+.=.|.-+.+. .... .+++.++++
T Consensus 121 vv~~ah~-~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I 199 (323)
T 2isw_A 121 VVAYAHA-RSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTI 199 (323)
T ss_dssp HHHHHHT-TTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCCHHHHHH
T ss_pred HHHHHHH-cCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCHHHHHHH
Confidence 5555432 24444444322 1 10 1234455555568999999874333333232 1123 678999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
++.+++|++.-||=.-|++..+.+.+.|-+
T Consensus 200 ~~~~~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 200 SDLTGIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp HHHHCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred HHHhCCCeEEECCCCCCHHHHHHHHHhccc
Confidence 999999999999776677777777665543
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.16 Score=45.61 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
+++.+.+.++.+++.++.|+.|.+-.. ..+..+.++.+.+.|++.|.+|+.. + .+.++.+++ .++|
T Consensus 61 ~~~~l~~~i~~i~~~~~~p~gVnl~~~--~~~~~~~~~~~~~~g~d~V~l~~g~---------p--~~~~~~l~~-~g~~ 126 (326)
T 3bo9_A 61 KPDDLRKAISELRQKTDKPFGVNIILV--SPWADDLVKVCIEEKVPVVTFGAGN---------P--TKYIRELKE-NGTK 126 (326)
T ss_dssp CHHHHHHHHHHHHTTCSSCEEEEEETT--STTHHHHHHHHHHTTCSEEEEESSC---------C--HHHHHHHHH-TTCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEecc--CCCHHHHHHHHHHCCCCEEEECCCC---------c--HHHHHHHHH-cCCc
Confidence 688888999999887788998886442 1234566777889999999998642 1 245666765 4778
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+. .+.+.+++..+.+ .|+|+|.+
T Consensus 127 v~~--~v~s~~~a~~a~~-~GaD~i~v 150 (326)
T 3bo9_A 127 VIP--VVASDSLARMVER-AGADAVIA 150 (326)
T ss_dssp EEE--EESSHHHHHHHHH-TTCSCEEE
T ss_pred EEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 775 6889999998887 59999988
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.23 Score=44.34 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCC--CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+..+.+++.|+|.|.+.=.|.-+.+. .....|++.++++++.+++|++.-||=.-|++..+.+..+|-+
T Consensus 157 Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 157 PKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGD 229 (307)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccCHHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCc
Confidence 3444445567999999774333333222 1124789999999887799999999887788888887776543
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.22 Score=41.79 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=77.7
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+.-.+++.+.+.++. .+.|.|.|| |. .+++.+.++ .. ++|+.--++.... .+.
T Consensus 59 fvn~~~~~i~~~~~~--~~ld~vQLH-------------G~---e~~~~~~~l----~~--~~~vika~~v~~~-~~l-- 111 (203)
T 1v5x_A 59 FRDQPPEEVLRLMEE--ARLQVAQLH-------------GE---EPPEWAEAV----GR--FYPVIKAFPLEGP-ARP-- 111 (203)
T ss_dssp ESSCCHHHHHHHHHH--TTCSEEEEC-------------SC---CCHHHHHHH----TT--TSCEEEEEECSSS-CCG--
T ss_pred EeCCCHHHHHHHHHh--hCCCEEEEC-------------CC---CCHHHHHHh----cc--CCCEEEEEEcCCh-Hhh--
Confidence 334566666665543 367999999 22 355555443 21 5777766665432 111
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+....+|++.+.... + +.....||+.++.+. ..+.|++..||+ +++.+.+++ ..++.||=+.+|.-..|
T Consensus 112 ---~~~~~~~d~~LlD~~~--g--GtG~~fdW~~l~~~~-~~~~p~~LAGGL-~peNV~~ai-~~~p~gVDvsSGvE~~p 181 (203)
T 1v5x_A 112 ---EWADYPAQALLLDGKR--P--GSGEAYPRAWAKPLL-ATGRRVILAGGI-APENLEEVL-ALRPYALDLASGVEEAP 181 (203)
T ss_dssp ---GGGGSSCSEEEEECSS--T--TSCCCCCGGGGHHHH-HTTSCEEECSSC-CSTTHHHHH-HHCCSEEEESGGGEEET
T ss_pred ---hhhhcCCCEEEEcCCC--C--CCCCccCHHHHHhhh-ccCCcEEEECCC-CHHHHHHHH-hcCCCEEEeCCceecCC
Confidence 1233448999887543 1 111157998887632 246899999999 578888888 67999999998876444
Q ss_pred c
Q 023070 175 A 175 (287)
Q Consensus 175 ~ 175 (287)
.
T Consensus 182 G 182 (203)
T 1v5x_A 182 G 182 (203)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=95.13 E-value=0.48 Score=40.36 Aligned_cols=127 Identities=11% Similarity=-0.017 Sum_probs=70.0
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC----h--h
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN----L--Q 90 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~----~--~ 90 (287)
..|+....+++ ..+.|+|.|.+|.- ++ .+.+...++.+++. +.-|++=..+... . +
T Consensus 75 DipnTv~~~~~~~~~~gad~vtvh~~-----------~G-----~~~l~~~~~~~~~~-g~~v~vLt~~s~~~~~~~~~~ 137 (228)
T 3m47_A 75 DIPETNEKICRATFKAGADAIIVHGF-----------PG-----ADSVRACLNVAEEM-GREVFLLTEMSHPGAEMFIQG 137 (228)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEEST-----------TC-----HHHHHHHHHHHHHH-TCEEEEECCCCSGGGGTTHHH
T ss_pred ccHhHHHHHHHHHHhCCCCEEEEecc-----------CC-----HHHHHHHHHHHHhc-CCCeEEEEeCCCccHHHHHHH
Confidence 45666666666 35678999999842 21 23344455544332 2334442222211 1 1
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCH-HHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHM-EDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~-~da~~~l~~~gad~VmiG 167 (287)
....+++...+.|++++.+.+ + ..+.++.+++..+ .++ ..+||+.- .+. ++++ .|+|.+.+|
T Consensus 138 ~~~~~a~~a~~~G~~GvV~~a-t-----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~-aGad~iVvG 202 (228)
T 3m47_A 138 AADEIARMGVDLGVKNYVGPS-T-----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GETL-RFADAIIVG 202 (228)
T ss_dssp HHHHHHHHHHHTTCCEEECCS-S-----------CHHHHHHHHHHHCSSSEE-EECC----------CGG-GTCSEEEEC
T ss_pred HHHHHHHHHHHhCCcEEEECC-C-----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHHH-cCCCEEEEC
Confidence 234577778899999877643 1 1134566766553 444 77787632 145 6665 699999999
Q ss_pred hhhhhCccc
Q 023070 168 ESLLENPAL 176 (287)
Q Consensus 168 R~~l~nP~l 176 (287)
|+++..++.
T Consensus 203 r~I~~a~dp 211 (228)
T 3m47_A 203 RSIYLADNP 211 (228)
T ss_dssp HHHHTSSCH
T ss_pred HHHhCCCCH
Confidence 999875543
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.59 Score=39.93 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred EEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc--cCC--c--EEEEecC
Q 023070 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LNV--P--VSCKIRV 85 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--~~~--p--v~vKiR~ 85 (287)
+-+. ..|+....+++ ..+.|+|.|.+|.- ++ .+.+...++.+++. .+. | +.|-...
T Consensus 61 ~kl~-Dip~t~~~~~~~~~~~Gad~vtvH~~-----------~g-----~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~t 123 (239)
T 1dbt_A 61 LKLH-DIPTTVNKAMKRLASLGVDLVNVHAA-----------GG-----KKMMQAALEGLEEGTPAGKKRPSLIAVTQLT 123 (239)
T ss_dssp EEEC-SCHHHHHHHHHHHHTTTCSEEEEEGG-----------GC-----HHHHHHHHHHHHHHSCTTSCCCEEEEECSCT
T ss_pred eccc-cchHHHHHHHHHHHhcCCCEEEEeCc-----------CC-----HHHHHHHHHHHHhhhccCCCCccEEEEEEcC
Confidence 5554 66777666665 45669999999942 11 22334555555443 132 3 4444433
Q ss_pred CCChhhH----------H----HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHH
Q 023070 86 FPNLQDT----------I----KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHME 150 (287)
Q Consensus 86 g~~~~~~----------~----~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~ 150 (287)
..+.+.. . .++....+.|.+.+.... +.++.+++.. +.+++..|||+.-.
T Consensus 124 s~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~---------------~~i~~lr~~~~~~~i~v~gGI~~~~ 188 (239)
T 1dbt_A 124 STSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV---------------HEAKAIYQAVSPSFLTVTPGIRMSE 188 (239)
T ss_dssp TCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG---------------GGHHHHTTTSCTTCEEEECCBCCTT
T ss_pred CCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH---------------HHHHHHHHhcCCCcEEEeCCcCCCC
Confidence 3221111 1 222223556777654432 1245566554 36899999997532
Q ss_pred H----------HHHHHHhcCccEEEEehhhhhCcc
Q 023070 151 D----------VQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 151 d----------a~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
. ..++++ .|+|.+.+||+++..|+
T Consensus 189 ~~~~dq~rv~tp~~a~~-aGad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 189 DAANDQVRVATPAIARE-KGSSAIVVGRSITKAED 222 (239)
T ss_dssp SCCTTCSSCBCHHHHHH-TTCSEEEECHHHHTSSC
T ss_pred CCccceeccCCHHHHHH-cCCCEEEEChhhcCCCC
Confidence 2 256666 69999999999997655
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.047 Score=50.70 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+.++.+.++|++.|.++... +.+ ...|+.++.+++.+ ++||++ |++.+++++..+.+ .|+|+|.+|
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~-----g~~-~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~-~Gad~I~vg 222 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAH-----GHS-TRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVG 222 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC-----CSS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHT-TTCSEEEEC
T ss_pred hHHHHHHHHHHCCCCEEEEeCCC-----CCh-HHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHh-cCCCEEEEC
Confidence 45667788889999999985221 111 23578889999988 899987 77889999998887 699999994
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.072 Score=45.70 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=79.8
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
+.++|...|...+.++.+.++.|+|. ||+--|.=.+|. .+| ..+++++++.++.|+.+-+-.. +
T Consensus 3 i~pSila~D~~~l~~~i~~~~~gad~lHvDvmDG~fvpn~---t~G----------~~~v~~lr~~~~~~~dvhLmv~-d 68 (231)
T 3ctl_A 3 ISPSLMCMDLLKFKEQIEFIDSHADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLATKPLDCHLMVT-R 68 (231)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHTTCSCEEEEEECSSSSSCC---CBC----------HHHHHHHHTTCCSCEEEEEESS-C
T ss_pred EEeehhhCChhhHHHHHHHHHcCCCEEEEEEEeCccCccc---hhc----------HHHHHHHHhccCCcEEEEEEec-C
Confidence 56889999999999999977778887 555434311121 122 3578888887788888776553 2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc--EEEecCCCCHH-HHHHHHHhcCccEEE
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP--VLANGNVRHME-DVQKCLEETGCEGVL 165 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip--Vi~nGgI~s~~-da~~~l~~~gad~Vm 165 (287)
. ..+++.+.++|++++++|.-... ..-...++.+++. ++- |..|-+ |+. .+..++. ++|.|.
T Consensus 69 p---~~~i~~~~~aGAd~itvh~Ea~~-------~~~~~~i~~i~~~-G~k~gv~lnp~--tp~~~~~~~l~--~~D~Vl 133 (231)
T 3ctl_A 69 P---QDYIAQLARAGADFITLHPETIN-------GQAFRLIDEIRRH-DMKVGLILNPE--TPVEAMKYYIH--KADKIT 133 (231)
T ss_dssp G---GGTHHHHHHHTCSEEEECGGGCT-------TTHHHHHHHHHHT-TCEEEEEECTT--CCGGGGTTTGG--GCSEEE
T ss_pred H---HHHHHHHHHcCCCEEEECcccCC-------ccHHHHHHHHHHc-CCeEEEEEECC--CcHHHHHHHHh--cCCEEE
Confidence 3 34567888999999999964311 1112556666654 332 333333 443 4444444 699887
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 134 v 134 (231)
T 3ctl_A 134 V 134 (231)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.059 Score=48.45 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=51.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccc---cccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGA---FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~---~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+-|+ ++++|+|.||||.-+-.+ |+ +.....+.+..+|+++++..++||+|...- .+
T Consensus 31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~~-------~~ 96 (314)
T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGESTRP-------GSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTWK-------SQ 96 (314)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCC------------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECSC-------HH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCCC-------HH
Confidence 3444444444 678899999999633111 22 112456677888888888789999998321 35
Q ss_pred HHHHHHHcCCCEE-EEecc
Q 023070 95 YAKMLEDAGCSLL-AVHGR 112 (287)
Q Consensus 95 ~a~~l~~~G~~~I-~vh~r 112 (287)
.++...++|++.| .|++.
T Consensus 97 Va~aAl~aGa~iINDVsg~ 115 (314)
T 2vef_A 97 VAEAALAAGADLVNDITGL 115 (314)
T ss_dssp HHHHHHHTTCCEEEETTTT
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 6777778899888 45543
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.62 Score=40.01 Aligned_cols=130 Identities=13% Similarity=0.192 Sum_probs=72.8
Q ss_pred EEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc--cC--Cc--EEEEecC
Q 023070 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--LN--VP--VSCKIRV 85 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--~~--~p--v~vKiR~ 85 (287)
+-+. ..|+....+++ ..+.|+|.|.+|.- ++ .+.+.+.++.+++. .+ .| +.+....
T Consensus 62 ~kl~-Dip~t~~~~~~~~~~~Gad~vTvH~~-----------~g-----~~~l~~~~~~~~~~~~~G~~~~~~lav~~~T 124 (246)
T 2yyu_A 62 LKLH-DIPNTVKQAMKGLARVGADLVNVHAA-----------GG-----RRMMEAAIEGLDAGTPSGRMRPRCIAVTQLT 124 (246)
T ss_dssp EEEC-SCHHHHHHHHHHHHHTTCSEEEEEGG-----------GC-----HHHHHHHHHHHHHHSCSSSCCCEEEEESSCT
T ss_pred eecc-cchHHHHHHHHHHHhcCCCEEEEECC-----------CC-----HHHHHHHHHHHHhhcccCCcCCCEEEEEeCC
Confidence 5554 66777666665 35679999999942 11 23345555666541 22 33 3333222
Q ss_pred CCChhhH--------------HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCH-
Q 023070 86 FPNLQDT--------------IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM- 149 (287)
Q Consensus 86 g~~~~~~--------------~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~- 149 (287)
..+.++. ..++....+.|.+.+.... ++ ++++++.. ..+++..|||+.-
T Consensus 125 s~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------~e-i~~lr~~~~~~~i~V~gGI~~~g 189 (246)
T 2yyu_A 125 STDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSA--------------NE-AAFIKERCGASFLAVTPGIRFAD 189 (246)
T ss_dssp TCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECCH--------------HH-HHHHHHHHCTTSEEEECCCCCCC
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeCH--------------HH-HHHHHHhcCCCCEEEeCCcCCCC
Confidence 2111111 1222223456777653321 23 55666554 3568999999742
Q ss_pred H---------HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 150 E---------DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 150 ~---------da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
. .+.++++ .|+|.+.+||+++..++
T Consensus 190 ~~~~dq~rv~t~~~a~~-aGad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 190 DAAHDQVRVVTPRKARA-LGSDYIVIGRSLTRAAD 223 (246)
T ss_dssp -------CCCCHHHHHH-HTCSEEEECHHHHTSSS
T ss_pred CCcccccccCCHHHHHH-cCCCEEEECHhhcCCCC
Confidence 0 3566666 59999999999997655
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.13 Score=44.96 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=67.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 85 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------ 85 (287)
+|++..+.|. +++.|+++|.|--| ....+.|+++.++ ++||.--+.+
T Consensus 92 ~~~~a~~~a~rl~kaGa~aVklEgg-------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~ 151 (264)
T 1m3u_A 92 TPEQAFENAATVMRAGANMVKIEGG-------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYK 151 (264)
T ss_dssp SHHHHHHHHHHHHHTTCSEEECCCS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc-------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeE
Confidence 5666655444 55667777777521 2344555555443 7888733322
Q ss_pred --CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 --FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 --g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|-+. +++++-++.++++|++.|.+.+.. . +..+++.+.+++|+|+-|.= .+
T Consensus 152 v~grt~~~a~~~i~rA~a~~eAGA~~ivlE~vp----------~--~~a~~it~~l~iP~igIGag------------~~ 207 (264)
T 1m3u_A 152 VQGRGDEAGDQLLSDALALEAAGAQLLVLECVP----------V--ELAKRITEALAIPVIGIGAG------------NV 207 (264)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHTCCEEEEESCC----------H--HHHHHHHHHCSSCEEEESSC------------TT
T ss_pred EEeCCHHHHHHHHHHHHHHHHCCCcEEEEecCC----------H--HHHHHHHHhCCCCEEEeCCC------------CC
Confidence 2222 456777888999999999997541 1 56788999999999987632 36
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
|||-++-
T Consensus 208 ~dgQvLV 214 (264)
T 1m3u_A 208 TDGQILV 214 (264)
T ss_dssp SSEEEEC
T ss_pred CCcceee
Confidence 8886543
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.46 Score=42.11 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=92.0
Q ss_pred EecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-Chhh
Q 023070 14 QFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 91 (287)
Q Consensus 14 Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~ 91 (287)
=+...|+-. |++++ .|||+|=+-= .....+ -|+-....-..+.+...+++|.+.++.||++.+-.|+ +..+
T Consensus 19 ~~~a~D~~s----A~~~~~aG~~ai~vs~-~~~a~~--~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~ 91 (290)
T 2hjp_A 19 AMAAHNPLV----AKLAEQAGFGGIWGSG-FELSAS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVN 91 (290)
T ss_dssp EEECSSHHH----HHHHHHHTCSEEEECH-HHHHHH--TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHH
T ss_pred EecCCCHHH----HHHHHHcCCCEEEECh-HHHHHh--CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHH
Confidence 344556543 44443 5899887651 011112 2233333456777888888998899999999998875 4567
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCC------CCcccc---HHHHHHHHhhC---CCcEEEecCCC----CHHHHH--
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRAD---WNAIKAVKNAL---RIPVLANGNVR----HMEDVQ-- 153 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~---~~~i~~i~~~~---~ipVi~nGgI~----s~~da~-- 153 (287)
+.+.++.+.++|+.+|.+-+.....+.+ ....+. .+.|+.+++.- +.-|++=.+-. ..+++.
T Consensus 92 ~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R 171 (290)
T 2hjp_A 92 VHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRR 171 (290)
T ss_dssp HHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHH
Confidence 7888999999999999997664321111 101111 23344444442 33344433332 134443
Q ss_pred -HHHHhcCccEEEEehhhhhCccchhchh
Q 023070 154 -KCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 154 -~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+.+.|||+|++=-+ +.++..++++.
T Consensus 172 a~ay~eAGAd~i~~e~~-~~~~~~~~~i~ 199 (290)
T 2hjp_A 172 GQAYEEAGADAILIHSR-QKTPDEILAFV 199 (290)
T ss_dssp HHHHHHTTCSEEEECCC-CSSSHHHHHHH
T ss_pred HHHHHHcCCcEEEeCCC-CCCHHHHHHHH
Confidence 2333469999988311 34556666554
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.19 Score=46.54 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC------------------------------Cc----CCC-
Q 023070 76 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------------------------EK----DGK- 120 (287)
Q Consensus 76 ~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~------------------------------~~----~~~- 120 (287)
+.|+.+-+-...+.+...+++++++++|++.|.++--+.. +. ...
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~ 225 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence 4566666544345566778888889999998877421100 00 000
Q ss_pred ----------CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 121 ----------KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 121 ----------~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.....|+.++.+++.+++||++- |+.+++++..+.+ .|+|+|.++
T Consensus 226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~-aGad~I~vs 280 (392)
T 2nzl_A 226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAK-GILRGDDAREAVK-HGLNGILVS 280 (392)
T ss_dssp CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEE-EECCHHHHHHHHH-TTCCEEEEC
T ss_pred hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEE-ecCCHHHHHHHHH-cCCCEEEeC
Confidence 11246889999999999999986 4689999998887 699999983
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.14 Score=45.31 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=48.5
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+++...+.|+ .+++|+|.||||.-+..+ +.-.-......+.+..+++++++. ++||++...- .+.++
T Consensus 27 ~~~~a~~~a~~~v~~GAdiIDIGgestrp----ga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~~-------~~va~ 94 (280)
T 1eye_A 27 DLDDAVKHGLAMAAAGAGIVDVGGESSRP----GATRVDPAVETSRVIPVVKELAAQ-GITVSIDTMR-------ADVAR 94 (280)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECSC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC----CCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCCC-------HHHHH
Confidence 5677766665 678899999999533111 111112234566777788888765 8999998321 34566
Q ss_pred HHHHcCCCEE-EEec
Q 023070 98 MLEDAGCSLL-AVHG 111 (287)
Q Consensus 98 ~l~~~G~~~I-~vh~ 111 (287)
...++|++.| .|++
T Consensus 95 aAl~aGa~iINdvsg 109 (280)
T 1eye_A 95 AALQNGAQMVNDVSG 109 (280)
T ss_dssp HHHHTTCCEEEETTT
T ss_pred HHHHcCCCEEEECCC
Confidence 7777898877 4443
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.35 Score=44.44 Aligned_cols=43 Identities=21% Similarity=0.573 Sum_probs=38.0
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++.+++||++- |+.+++++..+.+ .|+|+|.++
T Consensus 211 ~~~~~~i~~i~~~~~~Pv~vk-gv~t~e~a~~a~~-aGad~I~vs 253 (380)
T 1p4c_A 211 SFNWEALRWLRDLWPHKLLVK-GLLSAEDADRCIA-EGADGVILS 253 (380)
T ss_dssp TCCHHHHHHHHHHCCSEEEEE-EECCHHHHHHHHH-TTCSEEEEC
T ss_pred cccHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHH-cCCCEEEEc
Confidence 457999999999999999986 4899999999988 699999994
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.03 Score=50.57 Aligned_cols=122 Identities=8% Similarity=-0.011 Sum_probs=89.4
Q ss_pred CCEEEEec-C--CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 9 RPLFVQFC-A--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~-g--~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.|+-..+. . .+|+.+. +.++.||..+.+..| . +++.-.+.++++++ -++.+.+..+-
T Consensus 99 v~~~~~~~~~~~~~~~~~~---~~~~~G~~~~KiKvg------------~----~~~~d~~~v~avr~-~~~~l~vDaN~ 158 (330)
T 3caw_A 99 IKNNYLLSHFQDLKPGFLD---GLKNEGYNTVKVKMG------------R----DLQKEADMLTHIAA-SGMRMRLDFNA 158 (330)
T ss_dssp CCBCEEECTTSCCCTTHHH---HHHHHTCCEEEEECS------------S----CHHHHHHHHHHHHH-TTCEEEEECTT
T ss_pred eEEEEEecCCCCCCHHHHH---HHHHcCCcEEEEecC------------C----CHHHHHHHHHHHhC-CCCeEEEECCC
Confidence 45556665 3 5788777 555669999999764 1 45666778888888 67888888888
Q ss_pred CCChhhHHHHHHHHHH---cCCCEEEEeccCCCCcCCCCccc-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 FPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+|+.+++.++++.+++ .++.+| ++.-. +. |++.. ++ .+ +||.+.-. +..++.++++...+
T Consensus 159 ~~~~~~A~~~~~~l~~~~~~~l~~i-------EqP~~---~~~d~~~~--l~-~~-iPIa~dEs--~~~~~~~~i~~~a~ 222 (330)
T 3caw_A 159 LGSWQTFEKFMVNLPLTVRPLIEYV-------EDPFP---FDFHAWGE--AR-KL-AKIALDNQ--YDKVPWGKIASAPF 222 (330)
T ss_dssp CSCHHHHHHHHHTSCTTTGGGEEEE-------ECCSS---CCHHHHHH--HT-TT-SCEEESTT--GGGCCTTTCSSCSC
T ss_pred CCCHHHHHHHHHHhhhhccCCceEE-------ECCCC---CCccHHHH--HH-hc-CcEEeCCC--CHHHHHHHHHcCCC
Confidence 9999999999999988 666555 22111 23 55555 77 77 99888666 88899888887788
Q ss_pred cEEEE
Q 023070 162 EGVLS 166 (287)
Q Consensus 162 d~Vmi 166 (287)
|.|.+
T Consensus 223 d~v~~ 227 (330)
T 3caw_A 223 DVIVI 227 (330)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 98887
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.27 Score=44.69 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC-CCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI-~s~~da~~~l~~~gad~Vmi 166 (287)
+.+.+++-++.++++|++.|-+.--+ ..+.+.++.+++.+++|+++ || +++.-+.++++ .|+|.+=|
T Consensus 44 D~~atv~Qi~~l~~aG~diVRvavp~---------~~~a~al~~I~~~~~vPlva--DiHf~~~lal~a~e-~G~dklRI 111 (366)
T 3noy_A 44 DVEATLNQIKRLYEAGCEIVRVAVPH---------KEDVEALEEIVKKSPMPVIA--DIHFAPSYAFLSME-KGVHGIRI 111 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS---------HHHHHHHHHHHHHCSSCEEE--ECCSCHHHHHHHHH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---------hHHHHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHH-hCCCeEEE
Confidence 45567788889999999999886221 23357789999999999986 66 78999999998 59999999
Q ss_pred ehhhhhCccchhchhh--hhhcc-------CCc-------cccCCCchhHHHHHHHHHHHHHhCC
Q 023070 167 AESLLENPALFAGFRT--AEWIV-------GSE-------EISKDGNLDQADLLVEYLKLCEKYP 215 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~--~~~~~-------~g~-------~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (287)
-=|-+.+++-|.++-. .++.. .|. .+..+++....+-+.+|.+++++.+
T Consensus 112 NPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~g 176 (366)
T 3noy_A 112 NPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWG 176 (366)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 9999988876665521 11100 010 0111344455677888888888765
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.065 Score=47.73 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=56.3
Q ss_pred HHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEE
Q 023070 66 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLA 142 (287)
Q Consensus 66 ~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~ 142 (287)
+.++++++.. ..++.|-+. +.+ -++.+.++|+|.|-+... +.+.++++.+. .++++.+
T Consensus 198 ~Av~~~r~~~p~~~ieVEvd---tld----e~~eAl~aGaD~I~LDn~------------~~~~l~~av~~i~~~v~iea 258 (298)
T 3gnn_A 198 EALDAAFALNAEVPVQIEVE---TLD----QLRTALAHGARSVLLDNF------------TLDMMRDAVRVTEGRAVLEV 258 (298)
T ss_dssp HHHHHHHHHC--CCCEEEES---SHH----HHHHHHHTTCEEEEEESC------------CHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeC---CHH----HHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhCCCCeEEE
Confidence 4455555443 344444432 222 245556689999988742 22444444443 3688999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+||| +++.+.++.+ +|+|++.+|.....-|+
T Consensus 259 SGGI-~~~~i~~~a~-tGVD~isvG~lt~sa~~ 289 (298)
T 3gnn_A 259 SGGV-NFDTVRAIAE-TGVDRISIGALTKDVRA 289 (298)
T ss_dssp ESSC-STTTHHHHHH-TTCSEEECGGGGTSCCC
T ss_pred EcCC-CHHHHHHHHH-cCCCEEEECCeecCCCc
Confidence 9999 5688888777 79999999986655554
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.87 Score=40.07 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=68.2
Q ss_pred EEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEecCCC---
Q 023070 13 VQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVFP--- 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKiR~g~--- 87 (287)
+-+...|.-. |++++ .|+|.| + .|....++.- |+-..+.-..+.+...+++|++.++.| |.+.+..|.
T Consensus 37 ~~~tayDa~s----A~l~e~aG~d~i-l-vGdSl~~~~l-G~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~ 109 (281)
T 1oy0_A 37 AMLTAYDYST----ARIFDEAGIPVL-L-VGDSAANVVY-GYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEA 109 (281)
T ss_dssp EEEECCSHHH----HHHHHTTTCCEE-E-ECTTHHHHTT-CCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTT
T ss_pred EEEeCcCHHH----HHHHHHcCCCEE-E-ECHHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccC
Confidence 4455555432 55554 599998 4 3655554433 344445556677777778888777644 556655542
Q ss_pred ChhhHHHHHHH-HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE
Q 023070 88 NLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 88 ~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi 141 (287)
+.+++.+-+.+ ++++|+++|.+-+.. .-.+.|+.+.+. ++||+
T Consensus 110 s~~~a~~na~rl~~eaGa~aVklEdg~----------e~~~~I~al~~a-gIpV~ 153 (281)
T 1oy0_A 110 GPTAALAAATRFLKDGGAHAVKLEGGE----------RVAEQIACLTAA-GIPVM 153 (281)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEBSG----------GGHHHHHHHHHH-TCCEE
T ss_pred CHHHHHHHHHHHHHHhCCeEEEECCcH----------HHHHHHHHHHHC-CCCEE
Confidence 45566654444 455999999997651 223567777664 78887
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.91 E-value=1.7 Score=37.64 Aligned_cols=140 Identities=13% Similarity=0.154 Sum_probs=90.2
Q ss_pred CCC-EEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRP-LFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p-~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
..| +++-|.+.+.+++...++ ..+.|+|.||+=.-+ +.. ..+.+.+.+.+..+++.. ++|+.+=+|
T Consensus 18 ~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~---------l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~R 86 (257)
T 2yr1_A 18 TEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF---------FRA--IDDQERVLATANGLRNIAGEIPILFTIR 86 (257)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGG---------CTT--TTCHHHHHHHHHHHHHHSSSCCEEEECC
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeec---------ccc--cCcHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 345 779999999999866666 467799999996421 110 124577888889998887 799999988
Q ss_pred CCC--------ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHH
Q 023070 85 VFP--------NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMED 151 (287)
Q Consensus 85 ~g~--------~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~d 151 (287)
.-+ +.++..++.+.+.+.| +++|.|--... . ....+.+.....++.||++=- --+.++
T Consensus 87 t~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~--------~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~e 157 (257)
T 2yr1_A 87 SEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYG--------E-RIADVRRMTEECSVWLVVSRHYFDGTPRKET 157 (257)
T ss_dssp CTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGT--------T-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHH
T ss_pred ecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCC--------h-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHH
Confidence 621 2345677888888888 99999963211 1 112222222234667777642 233455
Q ss_pred HHHHHH---hcCccEEEEe
Q 023070 152 VQKCLE---ETGCEGVLSA 167 (287)
Q Consensus 152 a~~~l~---~~gad~VmiG 167 (287)
+.+.++ ..|||.|=++
T Consensus 158 l~~~~~~~~~~gaDivKia 176 (257)
T 2yr1_A 158 LLADMRQAERYGADIAKVA 176 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEE
Confidence 554443 3688877554
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.25 Score=42.97 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc---------------cccHHHHHHHHhhC-CCcEEEecCCCC--
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---------------RADWNAIKAVKNAL-RIPVLANGNVRH-- 148 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~---------------~~~~~~i~~i~~~~-~ipVi~nGgI~s-- 148 (287)
++.+.+.++++.+.++|+|.|.+-.-..++...++. ..-++.++++++.+ ++|+++.|..+.
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~ 107 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIF 107 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHH
Confidence 566789999999999999999984322221111100 01135688888888 899999654321
Q ss_pred ---HHHHHHHHHhcCccEEEEe
Q 023070 149 ---MEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 149 ---~~da~~~l~~~gad~VmiG 167 (287)
.+...+.....|+||+.+.
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEECT
T ss_pred HhhHHHHHHHHHHcCCCEEEEC
Confidence 1333333444799999984
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.4 Score=43.71 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCC---------------------------------hhhHHHHHHHHHHcCCC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPN---------------------------------LQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~---------------------------------~~~~~~~a~~l~~~G~~ 105 (287)
..++.+.+.++.+++.++.|+.|.+-.... .....+.++.+.+.|++
T Consensus 45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~ 124 (369)
T 3bw2_A 45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP 124 (369)
T ss_dssp SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence 357778888888877666677766422111 01134567778899999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE-eh
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 168 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi-GR 168 (287)
.|.+|... ..++.++.+++ .++||+. .+.|++++..+.+ .|+|+|.+ |+
T Consensus 125 ~V~~~~g~----------~~~~~i~~~~~-~g~~v~~--~v~t~~~a~~a~~-~GaD~i~v~g~ 174 (369)
T 3bw2_A 125 VVSFHFGV----------PDREVIARLRR-AGTLTLV--TATTPEEARAVEA-AGADAVIAQGV 174 (369)
T ss_dssp EEEEESSC----------CCHHHHHHHHH-TTCEEEE--EESSHHHHHHHHH-TTCSEEEEECT
T ss_pred EEEEeCCC----------CcHHHHHHHHH-CCCeEEE--ECCCHHHHHHHHH-cCCCEEEEeCC
Confidence 99998542 23577888876 4777776 4789999987777 69999998 64
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.12 Score=44.18 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=35.7
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhc
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
+++|++.|||++.+++..+.. .|+||+.||.+++.-+++..-
T Consensus 176 ~~~ilyggsV~~~n~~~~~~~-~~vDG~LVG~a~l~a~~~~~~ 217 (225)
T 1hg3_A 176 EVKVLCGAGISTGEDVKKAIE-LGTVGVLLASGVTKAKDPEKA 217 (225)
T ss_dssp TSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTCSSHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHh-CCCCEEEeCHHHHCCcCHHHH
Confidence 589999999999999887776 699999999999977765543
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.41 Score=40.71 Aligned_cols=89 Identities=22% Similarity=0.249 Sum_probs=65.1
Q ss_pred cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 78 pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
|+..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++..+--+++.|-+.+.+++..+++
T Consensus 18 ~ii~vir~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~ 87 (224)
T 1vhc_A 18 KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRSE---------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS 87 (224)
T ss_dssp CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred CeEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEeccCc---------hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHH
Confidence 44444444 5668899999999999999999974432 2356788888876434566677889999999998
Q ss_pred hcCccEEEEehhhhhCccchhch
Q 023070 158 ETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.|||+|..+. .|+.+....
T Consensus 88 -aGAd~v~~p~---~d~~v~~~a 106 (224)
T 1vhc_A 88 -SGADFVVTPG---LNPKIVKLC 106 (224)
T ss_dssp -HTCSEEECSS---CCHHHHHHH
T ss_pred -CCCCEEEECC---CCHHHHHHH
Confidence 5999998873 566655443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=94.69 E-value=0.31 Score=42.52 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-------------cc--cHHHHHHHHhh-CCCcEEEecCCC---
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-------------RA--DWNAIKAVKNA-LRIPVLANGNVR--- 147 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-------------~~--~~~~i~~i~~~-~~ipVi~nGgI~--- 147 (287)
++.+++.++++.++++|+|+|.+---..++...++. .. -++.++++++. +++||++-+...
T Consensus 28 p~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~ 107 (268)
T 1qop_A 28 PGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVF 107 (268)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHH
Confidence 456788999999999999999994322221111100 00 13668889988 899998754221
Q ss_pred --C-HHHHHHHHHhcCccEEEEehhhh
Q 023070 148 --H-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 148 --s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
. ...+..+.+ .|+|++.+.-..+
T Consensus 108 ~~g~~~~~~~~~~-aGadgii~~d~~~ 133 (268)
T 1qop_A 108 NNGIDAFYARCEQ-VGVDSVLVADVPV 133 (268)
T ss_dssp TTCHHHHHHHHHH-HTCCEEEETTCCG
T ss_pred HhhHHHHHHHHHH-cCCCEEEEcCCCH
Confidence 1 234444444 7999999864443
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.73 Score=39.57 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=33.3
Q ss_pred HHHHHhhC-CCcEEEecCCCCHH----------HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 129 IKAVKNAL-RIPVLANGNVRHME----------DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 129 i~~i~~~~-~ipVi~nGgI~s~~----------da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++++++.. +.+++..|||+.-. ...++++ .|+|.+.+||+++..++
T Consensus 173 i~~lr~~~~~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~-aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 173 AVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALS-AGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp HHHHHHHHCSSSEEEECCBCCTTCCCTTCCSCBCHHHHHH-TTCSEEEECHHHHTSSS
T ss_pred HHHHHHhcCCCCEEEECCcCCCCCCccchhccCCHHHHHH-cCCCEEEECHHHcCCCC
Confidence 44555543 46899999997421 4666666 69999999999997655
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=1.5 Score=37.51 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=82.4
Q ss_pred EEEEecC-CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-
Q 023070 11 LFVQFCA-NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF- 86 (287)
Q Consensus 11 ~~~Qi~g-~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g- 86 (287)
+++-|.| .+.+++.+.++. .+.|+|.||+=.- .+.. .+++.+.+.+..+++.. ++|+.+=+|.-
T Consensus 6 Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD---------~l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~ 73 (238)
T 1sfl_A 6 VVATITPQLSIEETLIQKINHRIDAIDVLELRID---------QFEN---VTVDQVAEMITKLKVMQDSFKLLVTYRTKL 73 (238)
T ss_dssp EEEEECCCC---CHHHHHHHHTTTTCSEEEEECT---------TSTT---CCHHHHHHHHHHHC---CCSEEEEECCBGG
T ss_pred EEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEec---------cccc---CCHHHHHHHHHHHHHhccCCCEEEEeeccc
Confidence 6789999 999988776664 4568999999643 2211 14677888888998877 78999988862
Q ss_pred ------CChhhHHHHHHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHH---HhhCCCcEEEecC----CCCHHHH
Q 023070 87 ------PNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAV---KNALRIPVLANGN----VRHMEDV 152 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i---~~~~~ipVi~nGg----I~s~~da 152 (287)
.+.++..++.+.+.+. ++++|.|--.... +-+.++++ ....++.||++=- --+.+++
T Consensus 74 eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~---------~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el 144 (238)
T 1sfl_A 74 QGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADI---------DIEKHQRIITHLQQYNKEVIISHHNFESTPPLDEL 144 (238)
T ss_dssp GTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTS---------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCC---------ChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHH
Confidence 1344567778877777 6999999632200 11222332 2233566777642 2334666
Q ss_pred HHHHH---hcCccEEEEe
Q 023070 153 QKCLE---ETGCEGVLSA 167 (287)
Q Consensus 153 ~~~l~---~~gad~VmiG 167 (287)
...++ ..|||.|=++
T Consensus 145 ~~~~~~~~~~gaDivKia 162 (238)
T 1sfl_A 145 QFIFFKMQKFNPEYVKLA 162 (238)
T ss_dssp HHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 55543 3688877554
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.33 Score=43.45 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE-EecCCCChhhHHHHHHHHHHcCCC-
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIRVFPNLQDTIKYAKMLEDAGCS- 105 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v-KiR~g~~~~~~~~~a~~l~~~G~~- 105 (287)
+.++.|+|.||||+.+--+ + +....++...++++.+++.+++|+++ .. | +.+.-.+.++...++|++
T Consensus 82 ~~v~~GAdiIDIg~~StrP----~----~~~vs~eee~~vV~~v~~~~~vplsI~DT--~-~~~~~~~V~eaal~aga~~ 150 (310)
T 2h9a_B 82 KCVEYGADIVALRLVSAHP----D----GQNRSGAELAEVCKAVADAIDVPLMIIGC--G-VEEKDAEIFPVIGEALSGR 150 (310)
T ss_dssp HHHHTTCSEEEEECGGGCT----T----TTCCCHHHHHHHHHHHHHHCSSCEEEECC--S-CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHcCCcEEEEeCccCCC----C----CCCCCHHHHHHHHHHHHHhCCceEEEECC--C-CCCCCHHHHHHHHHhCCCC
Confidence 4667899999999753111 1 12245666777899998888999998 52 1 122334677888888887
Q ss_pred --EE-EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 106 --LL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 106 --~I-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
.| .+++- +++.+..+....+.||++..
T Consensus 151 k~iINdvs~~------------~~~~~~~~aa~~g~~vv~m~ 180 (310)
T 2h9a_B 151 NCLLSSATKD------------NYKPIVATCMVHGHSVVASA 180 (310)
T ss_dssp CCEEEEECTT------------THHHHHHHHHHHTCEEEEEC
T ss_pred CCEEEECCCC------------ccHHHHHHHHHhCCCEEEEC
Confidence 44 33321 34455555566688988765
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.22 Score=42.12 Aligned_cols=88 Identities=25% Similarity=0.331 Sum_probs=65.9
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
.|+..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++..+-.+++.|-+.+.+++..++
T Consensus 16 ~~~i~v~r~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~ 85 (214)
T 1wbh_A 16 GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTE---------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVT 85 (214)
T ss_dssp CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCST---------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHH
T ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh---------hHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHH
Confidence 345544554 4567889999999999999999974432 235678888887754567778899999999999
Q ss_pred HhcCccEEEEehhhhhCccchh
Q 023070 157 EETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+ .|||+|..|- .++.+..
T Consensus 86 ~-aGAd~v~~p~---~d~~v~~ 103 (214)
T 1wbh_A 86 E-AGAQFAISPG---LTEPLLK 103 (214)
T ss_dssp H-HTCSCEEESS---CCHHHHH
T ss_pred H-cCCCEEEcCC---CCHHHHH
Confidence 8 5999999883 4665544
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.18 Score=47.39 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=55.3
Q ss_pred CChhhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecC-CCCHHHHHHHHHhcCcc
Q 023070 87 PNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN-VRHMEDVQKCLEETGCE 162 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGg-I~s~~da~~~l~~~gad 162 (287)
|+.++++++++.+.+ .++.+| ++.- .+.||+..+++++.+ ++||.+.-- +.++.++.++++...+|
T Consensus 279 ~t~~eai~~~~~l~~~~~i~~i-------EePl---~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d 348 (444)
T 1w6t_A 279 RTSAEQIDYLEELVNKYPIITI-------EDGM---DENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAAN 348 (444)
T ss_dssp ECHHHHHHHHHHHHHHSCEEEE-------ESCS---CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-------ECCC---ChhhHHHHHHHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCC
Confidence 677888999988865 775544 2211 146899999999988 899988776 99999999999987899
Q ss_pred EEEE
Q 023070 163 GVLS 166 (287)
Q Consensus 163 ~Vmi 166 (287)
.|++
T Consensus 349 ~i~i 352 (444)
T 1w6t_A 349 SILI 352 (444)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.37 Score=41.80 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=84.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F---P 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g---~ 87 (287)
+-++..++++...| .+.|+|-|||+-.-.. |+ +.-.... ++.+++.+++||.+=||+ | +
T Consensus 4 lEvc~~s~~~a~~A---~~~GAdRIELc~~L~~--------GG-lTPS~g~----i~~~~~~~~ipv~vMIRPR~GdF~Y 67 (256)
T 1twd_A 4 LEICCYSMECALTA---QQNGADRVELCAAPKE--------GG-LTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCY 67 (256)
T ss_dssp EEEEESSHHHHHHH---HHTTCSEEEECBCGGG--------TC-BCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCC
T ss_pred EEEEeCCHHHHHHH---HHcCCCEEEEcCCccc--------CC-CCCCHHH----HHHHHHHcCCceEEEECCCCCCCcC
Confidence 34556666554433 3468999999842111 11 2222233 444556678999998887 2 2
Q ss_pred Chhh---HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecC---CCCHHHHHHHHHhcC
Q 023070 88 NLQD---TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~~---~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg---I~s~~da~~~l~~~g 160 (287)
+..+ ..+-++.+.++|++.|.+-.=+.+ +..|.+.++++.+.. ++||...=- +.++..+.+.|...|
T Consensus 68 s~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG 141 (256)
T 1twd_A 68 SDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELG 141 (256)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcC
Confidence 2222 234566788999999988655543 257888888887653 577775432 477888877777779
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
++.|.-
T Consensus 142 ~~rILT 147 (256)
T 1twd_A 142 IARVLT 147 (256)
T ss_dssp CCEEEE
T ss_pred CCEEEC
Confidence 998874
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.48 Score=41.61 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=69.2
Q ss_pred CCEEEEec-C--CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 9 RPLFVQFC-A--NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~-g--~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.|+++-+= | .+|++..+.+. ++++|+++|.|=-| ....+.++++++ .++||.--+.
T Consensus 91 ~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg-------------------~~~~~~i~~l~~-~GIpv~gHlg 150 (275)
T 3vav_A 91 ALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGG-------------------EWLAETVRFLVE-RAVPVCAHVG 150 (275)
T ss_dssp SEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEECC-------------------GGGHHHHHHHHH-TTCCEEEEEE
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc-------------------hhHHHHHHHHHH-CCCCEEEecC
Confidence 46666654 2 47777666554 56679999888622 123455555554 3778764432
Q ss_pred C--------------CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC
Q 023070 85 V--------------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 85 ~--------------g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg 145 (287)
+ |-+ .+++++-++.++++|++.|.+-+. +. +.++++.+.+++|+|+-|.
T Consensus 151 ltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~v----------p~--~~a~~It~~l~iP~igIGa 216 (275)
T 3vav_A 151 LTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAV----------PT--LVAAEVTRELSIPTIGIGA 216 (275)
T ss_dssp SCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEEESC----------CH--HHHHHHHHHCSSCEEEESS
T ss_pred CCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEecCC----------CH--HHHHHHHHhCCCCEEEEcc
Confidence 2 222 235677788899999999988644 12 3678899999999998763
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.1 Score=47.60 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=50.4
Q ss_pred HHHHHHHHHc--CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 93 IKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 93 ~~~a~~l~~~--G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+.++.+.+. |++.+.+|... +. ...-|+.++++++.. ++||++ |++.|++++..+.+ .|+|+|.++
T Consensus 120 ~~~~~~l~~~~~g~~~i~i~~~~-----g~-~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~-aGaD~I~v~ 189 (351)
T 2c6q_A 120 FEQLEQILEAIPQVKYICLDVAN-----GY-SEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELIL-SGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSC-----TT-BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHhccCCCCEEEEEecC-----CC-cHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 3455666666 99999887421 11 123478899999988 799885 67899999999888 599999886
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.14 Score=45.69 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|+++|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|||
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad 113 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESPTTT-AAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD 113 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 555667889999999999999998887643211 111224455555543 59998654444545554433 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+-.+.|..|.
T Consensus 114 avlv~~P~y~~~~ 126 (304)
T 3cpr_A 114 GLLVVTPYYSKPS 126 (304)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999999887665
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=94.42 E-value=1.9 Score=37.50 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHH----H------HHHHHHhcC
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHME----D------VQKCLEETG 160 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~----d------a~~~l~~~g 160 (287)
...+++...++|++++++. +.. ++.+++.+ +-.++..+||+-.. | ..++++ .|
T Consensus 146 v~~~A~~a~~~G~dGvV~s------------~~e---~~~ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~-aG 209 (259)
T 3tfx_A 146 VLSLAKMAKHSGADGVICS------------PLE---VKKLHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKE-WG 209 (259)
T ss_dssp HHHHHHHHHHTTCCEEECC------------GGG---HHHHHHHHCSSSEEEECCCCCC-----------CHHHHHH-TT
T ss_pred HHHHHHHHHHhCCCEEEEC------------HHH---HHHHHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHH-cC
Confidence 3567888889999998774 122 33444443 33467788886421 1 556666 59
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
+|.+++||+++..++
T Consensus 210 ad~iVvGr~I~~a~d 224 (259)
T 3tfx_A 210 SSAIVVGRPITLASD 224 (259)
T ss_dssp CSEEEECHHHHTSSS
T ss_pred CCEEEEChHHhCCCC
Confidence 999999999987554
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.15 Score=45.43 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=57.1
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++++++.. ..++.|-++. .+-++.+.++|+|.|-+..-+ .+.++++.+.+ ++.+.
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv~t-------l~e~~eAl~aGaDiImLDn~s------------~~~l~~av~~~~~~v~le 255 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIECDN-------ISQVEESLSNNVDMILLDNMS------------ISEIKKAVDIVNGKSVLE 255 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEESS-------HHHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCCEEEEECC-------HHHHHHHHHcCCCEEEECCCC------------HHHHHHHHHhhcCceEEE
Confidence 35555555543 4566655422 234555667899999886321 23444444332 68899
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 256 aSGGI-t~~~i~~~A~-tGVD~IsvGalthsa~~ 287 (300)
T 3l0g_A 256 VSGCV-NIRNVRNIAL-TGVDYISIGCITNSFQN 287 (300)
T ss_dssp EESSC-CTTTHHHHHT-TTCSEEECGGGTSSCCC
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEeCccccCCCc
Confidence 99999 5688887776 79999999955444444
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.11 Score=46.65 Aligned_cols=83 Identities=12% Similarity=0.100 Sum_probs=46.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...+-|+ .+++|+|.||||.-+-.+.....+-.-+.....+.+..+++++++..++||+|...- .+.+
T Consensus 46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~~-------~~Va 118 (314)
T 3tr9_A 46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSR-------PRVM 118 (314)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECSC-------HHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCCC-------HHHH
Confidence 35566655555 678899999999532222110000000112334557778888888789999998432 1334
Q ss_pred HHHHHcCCCEE
Q 023070 97 KMLEDAGCSLL 107 (287)
Q Consensus 97 ~~l~~~G~~~I 107 (287)
+...++|++.|
T Consensus 119 ~aAl~aGa~iI 129 (314)
T 3tr9_A 119 REAVNTGADMI 129 (314)
T ss_dssp HHHHHHTCCEE
T ss_pred HHHHHcCCCEE
Confidence 44444566654
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.68 Score=42.08 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=67.0
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
||.=+++..++.++- ..+.||.+|.... +.++....++.+.+.|.+.+.+|+-+.-+. .....|+..|..++
T Consensus 118 ~S~~~~N~pLL~~va-----~~gKPviLstGms-tl~Ei~~Ave~i~~~g~~viLlhC~s~YPt--~~~~~nL~aI~~Lk 189 (350)
T 3g8r_A 118 ASCSFTDWPLLERIA-----RSDKPVVASTAGA-RREDIDKVVSFMLHRGKDLTIMHCVAEYPT--PDDHLHLARIKTLR 189 (350)
T ss_dssp CSSSTTCHHHHHHHH-----TSCSCEEEECTTC-CHHHHHHHHHHHHTTTCCEEEEECCCCSSC--CGGGCCTTHHHHHH
T ss_pred CcccccCHHHHHHHH-----hhCCcEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCCC--CcccCCHHHHHHHH
Confidence 555577888766553 2589999997664 778888888888888988667786543221 12247889999999
Q ss_pred hhC-CCcEEEe----cCCCCHHHHHHHHHhcCcc
Q 023070 134 NAL-RIPVLAN----GNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 134 ~~~-~ipVi~n----GgI~s~~da~~~l~~~gad 162 (287)
+.. ++||..+ |+.. .-+..+.. .||+
T Consensus 190 ~~fp~lpVG~SdHt~g~~~--~~~~AAvA-lGA~ 220 (350)
T 3g8r_A 190 QQYAGVRIGYSTHEDPDLM--EPIMLAVA-QGAT 220 (350)
T ss_dssp HHCTTSEEEEEECCCSSCC--HHHHHHHH-TTCC
T ss_pred HHCCCCCEEcCCCCCCCcc--HHHHHHHH-cCCC
Confidence 988 7999877 3332 22334554 4775
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=2.4 Score=36.74 Aligned_cols=93 Identities=17% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCC-EEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRP-LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p-~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
+++| ++|-|.|.+.+++.+.|+.+ ..|+|.||+=+-+ +-. ..+++.+.+.+..+++.. ++|+.+-+
T Consensus 17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~---------l~~--~~~~~~v~~~l~~lr~~~~~lPiI~T~ 85 (258)
T 4h3d_A 17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDF---------FEN--VENIKEVKEVLYELRSYIHDIPLLFTF 85 (258)
T ss_dssp SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGG---------CTT--TTCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeecc---------ccc--cCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3566 67999999999988877654 5689999997431 100 135678889999998876 69999999
Q ss_pred cC----C---CChhhHHHHHHHHHHcC-CCEEEEe
Q 023070 84 RV----F---PNLQDTIKYAKMLEDAG-CSLLAVH 110 (287)
Q Consensus 84 R~----g---~~~~~~~~~a~~l~~~G-~~~I~vh 110 (287)
|. | .+.++..++.+.+.+.| +++|.|-
T Consensus 86 Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvE 120 (258)
T 4h3d_A 86 RSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVE 120 (258)
T ss_dssp CCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred echhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHh
Confidence 97 2 13345566777777776 8999886
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.13 Score=42.68 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=59.0
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHH
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~ 155 (287)
.|+..=+|. .+.+++.++++.+.+.|++.|.+|-++.. -.+.++.+++.++ -.+++.|-+.+++++..+
T Consensus 10 ~~~i~~~~~-~~~~~~~~~~~~~~~~G~~~iev~~~~~~---------~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a 79 (205)
T 1wa3_A 10 HKIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTVPD---------ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 79 (205)
T ss_dssp HCEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHH
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCcEEEecccCCHHHHHHH
Confidence 355554543 46678899999999999999999966421 1345777776642 224666778999999999
Q ss_pred HHhcCccEEEEehhh
Q 023070 156 LEETGCEGVLSAESL 170 (287)
Q Consensus 156 l~~~gad~VmiGR~~ 170 (287)
.+ .|+|.| ++-++
T Consensus 80 ~~-~Gad~i-v~~~~ 92 (205)
T 1wa3_A 80 VE-SGAEFI-VSPHL 92 (205)
T ss_dssp HH-HTCSEE-ECSSC
T ss_pred HH-cCCCEE-EcCCC
Confidence 88 599999 76443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.31 Score=43.80 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
+++.+.+.++.+++..+.|+.+.+-.. + .+..+.++.+.+.|++.|.+|+... .+.++.+++ .++|
T Consensus 47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~-~~~~~~~~~a~~~g~d~V~~~~g~p-----------~~~i~~l~~-~g~~ 112 (332)
T 2z6i_A 47 PKEVVKANIDKIKSLTDKPFGVNIMLL-S-PFVEDIVDLVIEEGVKVVTTGAGNP-----------SKYMERFHE-AGII 112 (332)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEEECTT-S-TTHHHHHHHHHHTTCSEEEECSSCG-----------GGTHHHHHH-TTCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC-C-CCHHHHHHHHHHCCCCEEEECCCCh-----------HHHHHHHHH-cCCe
Confidence 577778888888877778888876442 1 2345667788899999999996421 234666665 3788
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE-eh
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS-AE 168 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi-GR 168 (287)
|+. .+.+.+++..+.+ .|+|+|.+ |+
T Consensus 113 v~~--~v~~~~~a~~~~~-~GaD~i~v~g~ 139 (332)
T 2z6i_A 113 VIP--VVPSVALAKRMEK-IGADAVIAEGM 139 (332)
T ss_dssp EEE--EESSHHHHHHHHH-TTCSCEEEECT
T ss_pred EEE--EeCCHHHHHHHHH-cCCCEEEEECC
Confidence 885 4789999887776 69999988 54
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.56 Score=41.65 Aligned_cols=159 Identities=12% Similarity=0.125 Sum_probs=91.7
Q ss_pred ecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC--Chhh
Q 023070 15 FCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--NLQD 91 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~--~~~~ 91 (287)
+...|+-. |+++ +.|||+|=+-=. ....+. -++-....-..+.+...+++|.+.++.||++.+-.|. +..+
T Consensus 22 ~~a~D~~s----A~~~~~aG~~ai~vs~~-~~a~~~-~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~ 95 (295)
T 1xg4_A 22 VGTINANH----ALLAQRAGYQAIYLSGG-GVAAGS-LGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFN 95 (295)
T ss_dssp EECSSHHH----HHHHHHTTCSCEEECHH-HHHHTT-TCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHH
T ss_pred ecCcCHHH----HHHHHHcCCCEEEECch-Hhhhhh-cCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHH
Confidence 44556544 4444 358998876411 111111 1233333446677778888888888999999998875 4678
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCC----CCcccc---HHHHHHHHhhC-CCcEEEecCCCCH-----HHHH---HH
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDG----KKFRAD---WNAIKAVKNAL-RIPVLANGNVRHM-----EDVQ---KC 155 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~----~~~~~~---~~~i~~i~~~~-~ipVi~nGgI~s~-----~da~---~~ 155 (287)
..+.++.+.++|+++|.+-+......-+ ...... .+.|+.++++- ..++..+|..... +++. +.
T Consensus 96 ~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~a 175 (295)
T 1xg4_A 96 VARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQA 175 (295)
T ss_dssp HHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHH
Confidence 8889999999999999997654321111 101112 23344444442 3455555544332 2222 22
Q ss_pred HHhcCccEEEEehhhhhCccchhchh
Q 023070 156 LEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+.|||+|++= .+.++...+++.
T Consensus 176 y~eAGAd~i~~e--~~~~~~~~~~i~ 199 (295)
T 1xg4_A 176 YVEAGAEMLFPE--AITELAMYRQFA 199 (295)
T ss_dssp HHHTTCSEEEET--TCCSHHHHHHHH
T ss_pred HHHcCCCEEEEe--CCCCHHHHHHHH
Confidence 334699999883 234555555554
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=45.82 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|||
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls-~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 109 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLT-SEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 109 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 445667888999999999999988877643211 011224455555443 59988654444445554433 447999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 110 avlv~~P~y~~~s 122 (301)
T 1xky_A 110 AVMLVAPYYNKPS 122 (301)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999999887764
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.13 Score=45.65 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESATLS-VEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 455667888899999999999988877643211 111223455555543 58998765544556555443 347999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 105 avlv~~P~y~~~~ 117 (297)
T 3flu_A 105 YTLSVVPYYNKPS 117 (297)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988887775
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.63 Score=41.38 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=89.8
Q ss_pred ecCCCHHHHHHHHHHHc-CCCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-Chhh
Q 023070 15 FCANDPEILLNAARRVE-PYCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 91 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~-~g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~ 91 (287)
+...|+-. |++++ .|||+|=+-= ++- ... -|+-....-..+.+...+++|.+.+++||++.+-.|+ +..+
T Consensus 27 ~~a~D~~s----A~l~e~aGf~ai~vs~~s~a--~~~-~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~ 99 (298)
T 3eoo_A 27 VGAITAYA----AKMAEAVGFKAVYLSGGGVA--ANS-LGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFN 99 (298)
T ss_dssp EECSSHHH----HHHHHHHTCSCEEECHHHHH--HHT-TCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHH
T ss_pred ecCCCHHH----HHHHHHcCCCEEEECcHHHH--HHh-cCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHH
Confidence 44455543 44443 4888887751 211 111 1122222335666777778887788999999999886 4567
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCC-Cc--cccH-HHHHHH---HhhC-CCcEEEecCCCCH--HHHHHHH-----
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KF--RADW-NAIKAV---KNAL-RIPVLANGNVRHM--EDVQKCL----- 156 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~--~~~~-~~i~~i---~~~~-~ipVi~nGgI~s~--~da~~~l----- 156 (287)
..+.++.++++|+.+|.+-+.....+-+. .+ -.+. +.+.+| +++- +.+++.++...+. +.+.+.+
T Consensus 100 v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~a 179 (298)
T 3eoo_A 100 IARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIA 179 (298)
T ss_dssp HHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHh
Confidence 78889999999999999976653221111 01 1122 334444 3332 3445555544332 2222222
Q ss_pred -HhcCccEEEEehhhhhCccchhchh
Q 023070 157 -EETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 157 -~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.+.|||+|++= .+.++..++++.
T Consensus 180 y~~AGAD~if~~--~~~~~ee~~~~~ 203 (298)
T 3eoo_A 180 YVEAGADMIFPE--AMKTLDDYRRFK 203 (298)
T ss_dssp HHHTTCSEEEEC--CCCSHHHHHHHH
T ss_pred hHhcCCCEEEeC--CCCCHHHHHHHH
Confidence 23599999983 235677666554
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.13 Score=45.96 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=58.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+.|-|.+..... .....+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESPTTT-DGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCC-HHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 556677889999999999999988877643211 111224455555543 68998765545556665443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+....|..|.
T Consensus 113 avlv~~P~y~~~s 125 (304)
T 3l21_A 113 GLLVVTPYYSKPP 125 (304)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988887764
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.12 Score=45.74 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... .....+.++.+.+.+ ++|||+.-|-.+.+++.+.. ++.|||
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 99 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPTLT-TDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccccCC-HHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence 455667888899999999999988877643211 011224455555543 69998765555566665443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 100 avlv~~P~y~~~~ 112 (292)
T 3daq_A 100 AIMLITPYYNKTN 112 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988877664
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.34 Score=42.97 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=60.3
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCC---EEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEE--ecC
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLA--NGN 145 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~---~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~--nGg 145 (287)
.+.|+.+-+. +.+.++..+.++.+.++|+| +|.++-.............+ ++.++.+++.+++||++ +++
T Consensus 92 ~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~ 170 (314)
T 2e6f_A 92 SKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY 170 (314)
T ss_dssp TTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred CCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4789888875 56778889999999999999 89998532221100000112 46778888877889874 455
Q ss_pred CCCHHHH---HHHHHhcC-ccEEEEe
Q 023070 146 VRHMEDV---QKCLEETG-CEGVLSA 167 (287)
Q Consensus 146 I~s~~da---~~~l~~~g-ad~VmiG 167 (287)
+ +.+++ .+.+.+.| +|+|.+.
T Consensus 171 ~-~~~~~~~~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 171 F-DIAHFDTAAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp C-CHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred C-CHHHHHHHHHHHHhcCCceEEEEe
Confidence 5 55664 33445579 9999753
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.12 Score=46.44 Aligned_cols=87 Identities=16% Similarity=0.280 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.. ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls-~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESATLD-VEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 455667888889999999999988877643211 011123444444443 58998765555556655443 347999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 121 avlv~~P~y~~~s 133 (314)
T 3qze_A 121 ACLLVTPYYNKPT 133 (314)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999998887775
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.13 Score=49.41 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+-++.|.++|+|.|+|..-.. . ...-++.++.+++.. ++|||+ |+|-|.+.+..+++ .|||+|-+|-
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ahG-----h-s~~v~~~i~~ik~~~p~~~via-GNVaT~e~a~~Li~-aGAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQG-----N-SVYQIEFIKWIKQTYPKIDVIA-GNVVTREQAAQLIA-AGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSCC-----C-SHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEecccc-----c-cHHHHHHHHHHHhhCCcceEEe-ccccCHHHHHHHHH-cCCCEEeecC
Confidence 4567889999999999998842211 1 023467888888875 577665 89999999999888 5999999886
Q ss_pred h
Q 023070 169 S 169 (287)
Q Consensus 169 ~ 169 (287)
|
T Consensus 352 G 352 (556)
T 4af0_A 352 G 352 (556)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=94.08 E-value=0.13 Score=45.51 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=58.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLS-MEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD 98 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccccccCC-HHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 555667888899999999999988877643211 111224455555543 58998765545556655443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 99 avlv~~P~y~~~~ 111 (291)
T 3tak_A 99 AALLVTPYYNKPT 111 (291)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999998887775
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.15 Score=43.52 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-----------cccc----HHHHHHHHhhCCCcEEEecCCCC----
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-----------FRAD----WNAIKAVKNALRIPVLANGNVRH---- 148 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-----------~~~~----~~~i~~i~~~~~ipVi~nGgI~s---- 148 (287)
+.+++.+.++.+++. ++.|.+.--..+....++ ...+ .+.++++++.+++||..-++++.
T Consensus 17 ~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 95 (248)
T 1geq_A 17 DKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRA 95 (248)
T ss_dssp CHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhc
Confidence 446888999999999 999988511111111000 0012 57888999888999988766554
Q ss_pred --HHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 149 --MEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 149 --~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+.+..+++ .|+|+|.++--...++.
T Consensus 96 ~~~~~~~~~~~-~Gad~v~~~~~~~~~~~ 123 (248)
T 1geq_A 96 GVRNFLAEAKA-SGVDGILVVDLPVFHAK 123 (248)
T ss_dssp CHHHHHHHHHH-HTCCEEEETTCCGGGHH
T ss_pred CHHHHHHHHHH-CCCCEEEECCCChhhHH
Confidence 466777776 69999999855444444
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.19 Score=42.89 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=35.1
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+++|++.|||++.+++..+.. .|+||+.||.+++.-+++..
T Consensus 173 ~~~ilyggsV~~~n~~~~~~~-~giDG~LVG~a~l~a~~~~~ 213 (226)
T 1w0m_A 173 EVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDPYA 213 (226)
T ss_dssp TSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHh-CCCCEEEECHHHHCCcCHHH
Confidence 589999999999999987776 69999999999997766544
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.14 Score=45.46 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHH---hcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~---~~gad 162 (287)
|.+...++++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+..+ ..|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLN-HDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence 455667888999999999999988877643211 011224455555443 589986544445565554443 36999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 99 avlv~~P~y~~~s 111 (292)
T 2ojp_A 99 GCLTVTPYYNRPS 111 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999999887664
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.15 Score=45.30 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=57.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 100 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVG-SRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR 100 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC-HHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC
Confidence 455667888999999999999998877643211 011234555566655 48988554444555554433 346999
Q ss_pred EEEEehhhhhC-cc
Q 023070 163 GVLSAESLLEN-PA 175 (287)
Q Consensus 163 ~VmiGR~~l~n-P~ 175 (287)
+||+....|.. |.
T Consensus 101 avlv~~P~y~~~~s 114 (294)
T 3b4u_A 101 NILLAPPSYFKNVS 114 (294)
T ss_dssp EEEECCCCSSCSCC
T ss_pred EEEEcCCcCCCCCC
Confidence 99999888866 53
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=45.60 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|.|.+..... ..-..+.++.+.+.+ ++|||+.=|=.+.+++.+.. +..|+|
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls-~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 108 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQS-LSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 108 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence 455667888999999999999988877643211 011224455555543 69998654444445554333 446999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+-.+.|..|.
T Consensus 109 avlv~~P~y~~~s 121 (303)
T 2wkj_A 109 AVSAVTPFYYPFS 121 (303)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEecCCCCCCCC
Confidence 9999999887664
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.24 Score=41.34 Aligned_cols=83 Identities=5% Similarity=0.009 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEec--cCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHG--RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~--rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+..+..+.++.+.+.|++++.+-- .+... . .....+.++++++.++.|+.+-+.|.++++..+.+...|+|+|.
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~--~--~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDIMDGQFVP--N--ISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS--C--BCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCCCC--c--cccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 556777888999999999976542 11111 1 12337889999988888999999999987533444457999999
Q ss_pred EehhhhhCc
Q 023070 166 SAESLLENP 174 (287)
Q Consensus 166 iGR~~l~nP 174 (287)
+.-.....|
T Consensus 90 vh~~~~~~~ 98 (220)
T 2fli_A 90 IHTESTRHI 98 (220)
T ss_dssp EEGGGCSCH
T ss_pred EccCccccH
Confidence 975544443
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.24 Score=43.04 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=85.9
Q ss_pred HHHH-cCCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC
Q 023070 27 ARRV-EPYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 27 A~~~-~~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~ 104 (287)
|+++ +.|||.|=+- .+.- . .-|+-....-..+.+...+++|.+.++.||++.+-.|+.... .+.++++.++|+
T Consensus 33 A~~~~~aG~dai~vg~~s~a--~--~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~-~~~~~~l~~aGa 107 (255)
T 2qiw_A 33 AGLVEEAGFSGLTIGSHPVA--D--ATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSP-ADLIAQILEAGA 107 (255)
T ss_dssp HHHHHHTTCSCEEECHHHHH--H--HTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCH-HHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEEChHHHH--H--hCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHH-HHHHHHHHHcCC
Confidence 4444 3588888664 1111 1 123333344566777788888888889999999998853223 788889999999
Q ss_pred CEEEEeccCCC-CcCCCCccccHHHHHHHHhh---CCCcEEEecCCCC-----------HHHHH---HHHHhcCccEEEE
Q 023070 105 SLLAVHGRTRD-EKDGKKFRADWNAIKAVKNA---LRIPVLANGNVRH-----------MEDVQ---KCLEETGCEGVLS 166 (287)
Q Consensus 105 ~~I~vh~rt~~-~~~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s-----------~~da~---~~l~~~gad~Vmi 166 (287)
.+|.+-+.... .+.-.+...-.+.|+.+++. .++|+..+|-... .+++. +.+++.|||+|++
T Consensus 108 ~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~ 187 (255)
T 2qiw_A 108 VGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYP 187 (255)
T ss_dssp CEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred cEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEE
Confidence 99999654311 00001001122445555544 2578666664432 23332 1233469999998
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
= .+.++...+++.
T Consensus 188 e--~~~~~~~~~~i~ 200 (255)
T 2qiw_A 188 V--GLSTAEQVERLV 200 (255)
T ss_dssp C--CCCSHHHHHHHH
T ss_pred c--CCCCHHHHHHHH
Confidence 2 244445555553
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.31 Score=47.26 Aligned_cols=94 Identities=21% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHHH-HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHH
Q 023070 21 EILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA-~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l 99 (287)
+...+-| +.+++|+|.||||.| +......+.+.+++..+++.+++||++... + .+.++..
T Consensus 340 ~~a~~~A~~~v~~GAdiIDIgpg------------~~~v~~~ee~~rvv~~i~~~~~vpisIDT~------~-~~v~eaa 400 (566)
T 1q7z_A 340 EIVIKEAKTQVEKGAEVLDVNFG------------IESQIDVRYVEKIVQTLPYVSNVPLSLDIQ------N-VDLTERA 400 (566)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECS------------SGGGSCHHHHHHHHHHHHHHTCSCEEEECC------C-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCC------------CCCCCHHHHHHHHHHHHHhhCCceEEEeCC------C-HHHHHHH
Confidence 3333334 367889999999943 333456788888888888777999999832 1 2345555
Q ss_pred HHc--CCCEE-EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 100 EDA--GCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 100 ~~~--G~~~I-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
.++ |++.| .|++-. ..++.+..+....+.||++-
T Consensus 401 l~~~~G~~iINdis~~~----------~~~~~~~~~~~~~g~~vV~m 437 (566)
T 1q7z_A 401 LRAYPGRSLFNSAKVDE----------EELEMKINLLKKYGGTLIVL 437 (566)
T ss_dssp HHHCSSCCEEEEEESCH----------HHHHHHHHHHHHHCCEEEEE
T ss_pred HHhcCCCCEEEECCcch----------hhHHHHHHHHHHhCCeEEEE
Confidence 555 88876 444321 11233344444457777763
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.14 Score=45.24 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
.|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga 97 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMT-ETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV 97 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC
Confidence 3555667888999999999999988877643211 011224455555443 59988654444555554443 44699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|++|+-.+.|..|.
T Consensus 98 davlv~~P~y~~~s 111 (291)
T 3a5f_A 98 DGLLVITPYYNKTT 111 (291)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999998887664
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.14 Score=45.31 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=57.4
Q ss_pred ChhhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 88 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
|.+....+++.+.+ .|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLS-TEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCC-HHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 45566788888999 9999999988877643211 011224455555543 59998654444555554443 34699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+-.+.|..|.
T Consensus 101 davlv~~P~y~~~~ 114 (293)
T 1f6k_A 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999999887775
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.15 Score=45.02 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=57.8
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
.|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga 96 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLS-HEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGA 96 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 3566677889999999999999988877643211 111224455555443 59988554444445554333 44699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|++|+-.+.|..|.
T Consensus 97 davlv~~P~y~~~s 110 (289)
T 2yxg_A 97 DAVLSITPYYNKPT 110 (289)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999998887664
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.19 Score=44.71 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCCCEEEEeccC-CCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRT-RDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt-~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..++++.+++.|+++|.+.... .... .+.....+.+.++++++.+++||+++-.+...++++.+++ .|||+|. +
T Consensus 29 ~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a-~GAd~V~-~ 106 (305)
T 2nv1_A 29 INAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEA-MGVDYID-E 106 (305)
T ss_dssp SSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHH-HTCSEEE-E
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHH-CCCCEEE-E
Confidence 44678999999999999543210 0000 0100124678899999999999996433333677777776 6999996 6
Q ss_pred hhhhhCcc
Q 023070 168 ESLLENPA 175 (287)
Q Consensus 168 R~~l~nP~ 175 (287)
...+..++
T Consensus 107 ~~~l~~~~ 114 (305)
T 2nv1_A 107 SEVLTPAD 114 (305)
T ss_dssp CTTSCCSC
T ss_pred eccCCHHH
Confidence 66553333
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.15 Score=45.30 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (294)
T 2ehh_A 19 DYEALGNLIEFHVDNGTDAILVCGTTGESPTLT-FEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGAD 97 (294)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 556677889999999999999988877643211 011224455555543 59988654444555554433 447999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 98 avlv~~P~y~~~s 110 (294)
T 2ehh_A 98 GALVVVPYYNKPT 110 (294)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998887664
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.16 Score=45.41 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=58.0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
.|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.||
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls-~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga 108 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVN-EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA 108 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCC-HHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCC-HHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCC
Confidence 3566677889999999999999988877643211 011224455555443 58988654444545554433 34699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+-.+.|..|.
T Consensus 109 davlv~~P~y~~~s 122 (306)
T 1o5k_A 109 NGVLVVTPYYNKPT 122 (306)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999999887764
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.12 Score=46.39 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=58.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|||
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls-~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPTLT-HEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccccC-HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 455667888999999999999988876643211 111224455555543 58988765545556655443 347999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 120 avlv~~P~y~~~~ 132 (315)
T 3si9_A 120 AVLVVTPYYNRPN 132 (315)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998887774
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.15 Score=45.09 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=40.5
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
+++...+.|+ .+++|+|.||||.-+.-+ +.---+.....+.+..+++++++..++||++...
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrP----ga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~ 98 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRP----GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS 98 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCST----TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC----CCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCC
Confidence 4566666555 678899999999733111 1001122345667888888888777999999853
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=93.73 E-value=0.15 Score=43.20 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=79.5
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFC-ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~-g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.+++.=+= +.-|.....+++.+...+|.+.+|..... ...++ .. +. +.-|++=..+.
T Consensus 50 g~~VflDlK~~DIpnTv~~a~~~~~~~ad~vTvh~~~G~---------~~~~~------~~-~~-----~~~v~vLts~s 108 (215)
T 3ve9_A 50 DGIKILDLKLADIDNTMILIVDELKDITNSFIAHAFVGV---------EGSLA------SL-SQ-----RVDLFLVLSMS 108 (215)
T ss_dssp CSEEEEEEEECSCHHHHHHHHHHHTTTCSEEEEEGGGCT---------TTTHH------HH-HH-----HSEEEEECCCS
T ss_pred CCcEEEEecccCchhHHHHHHHHHHHhhheEEEeCCCCc---------HHHHH------hH-hc-----CCCEEEEEecC
Confidence 345554443 33455556666654333999999942110 11111 11 11 11244333332
Q ss_pred ---CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHH--HHHHHHHhcCc
Q 023070 87 ---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME--DVQKCLEETGC 161 (287)
Q Consensus 87 ---~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~--da~~~l~~~ga 161 (287)
+..+....+++...++|++++++.+. ..+.++.+++.++-.++..+||+. + +..++++ .|+
T Consensus 109 ~~~~~~~~v~~~a~~a~~~G~~GvV~sat------------~~~e~~~ir~~~~~f~~v~pGI~~-~g~~~~~a~~-~Ga 174 (215)
T 3ve9_A 109 HPGWNDAFYPYLREVARRVNPKGFVAPAT------------RPSMISRVKGDFPDKLVISPGVGT-QGAKPGIALC-HGA 174 (215)
T ss_dssp STTCCGGGHHHHHHHHHHHCCSEEECCTT------------SHHHHHHHHHHCTTSEEEECCTTS-TTCCTTHHHH-TTC
T ss_pred CcchHHHHHHHHHHHHHHcCCCceeeCCC------------CHHHHHHHHHhCCCcEEEcCCCCc-CcCCHHHHHH-cCC
Confidence 11334677888889999998876422 224566777765337888899974 3 5566776 599
Q ss_pred cEEEEehhhhhCccch
Q 023070 162 EGVLSAESLLENPALF 177 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf 177 (287)
|.+.+||+++..++-.
T Consensus 175 d~iVvGr~I~~a~dp~ 190 (215)
T 3ve9_A 175 DYEIVGRSVYQSADPV 190 (215)
T ss_dssp SEEEECHHHHTSSSHH
T ss_pred CEEEeCHHHcCCCCHH
Confidence 9999999999765543
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.16 Score=46.20 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|||
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls-~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLG-AEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 455667889999999999999988877643211 011224455555543 58998654444555554443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 129 avlv~~P~Y~~~s 141 (343)
T 2v9d_A 129 GIVVINPYYWKVS 141 (343)
T ss_dssp EEEEECCSSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999999887664
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.15 Score=46.15 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+|
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls-~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 131 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMYLT-REERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD 131 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 455667888999999999999988877643211 011224455555543 59998544434445554333 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 132 avlv~~P~Y~~~s 144 (332)
T 2r8w_A 132 ALLLAPVSYTPLT 144 (332)
T ss_dssp EEEECCCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998887664
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.24 Score=42.14 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=77.0
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---CChhh---HHHHHHHHHHc
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F---PNLQD---TIKYAKMLEDA 102 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g---~~~~~---~~~~a~~l~~~ 102 (287)
+.|+|-|||+-.-.. |+ +.-....+..+..+ .+.+++||.+=||+ | ++..+ ..+-++.+.++
T Consensus 19 ~~GAdRIELc~~L~~--------GG-lTPS~g~i~~~~~~-~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~ 88 (224)
T 2bdq_A 19 KAIISRVELCDNLAV--------GG-TTPSYGVIKEANQY-LHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVEL 88 (224)
T ss_dssp TTTCCEEEEEBCGGG--------TC-BCCCHHHHHHHHHH-HHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCEEEEcCCccc--------CC-cCCCHHHHHHHHHh-hhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 458999999842111 11 22233333333211 15678999998887 2 22222 23456678899
Q ss_pred CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecC---C--CCHHHHHHHHHhcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---V--RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg---I--~s~~da~~~l~~~gad~Vmi 166 (287)
|++.|.+-.=+.+. ..|.+.++++.+.. ++||...=- + .++..+.+.|...|++.|.-
T Consensus 89 GadGvV~G~Lt~dg------~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILT 152 (224)
T 2bdq_A 89 ESDALVLGILTSNN------HIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILL 152 (224)
T ss_dssp TCSEEEECCBCTTS------SBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeeECCCC------CcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEEC
Confidence 99999886555442 58889888887653 688876543 3 77888877777789998873
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.16 Score=45.14 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... .....+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls-~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESATLT-HEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 556677889999999999999988877643211 011223455555443 58998765545556665443 34699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+-.+.|..|.
T Consensus 105 davlv~~P~y~~~s 118 (301)
T 3m5v_A 105 DGILSVAPYYNKPT 118 (301)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999998887775
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.36 Score=42.08 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=70.6
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~ 130 (287)
..|=.+..+.+.+.++++.+++. ++.||+=|-. + .+-++...+.|++.|-+|........... ....++.+.
T Consensus 132 egGlDv~~~~~~L~~~i~~L~~~-GIrVSLFIDp--d----~~qI~aA~~~GAd~IELhTG~YA~a~~~~~~~~el~rl~ 204 (278)
T 3gk0_A 132 EGGLDVVGHFDAVRAACKQLADA-GVRVSLFIDP--D----EAQIRAAHETGAPVIELHTGRYADAHDAAEQQREFERIA 204 (278)
T ss_dssp SSSBCTTTTHHHHHHHHHHHHHT-TCEEEEEECS--C----HHHHHHHHHHTCSEEEECCHHHHTCSSHHHHHHHHHHHH
T ss_pred CcchhhhccHHHHHHHHHHHHHC-CCEEEEEeCC--C----HHHHHHHHHhCcCEEEEecchhhccCCchhHHHHHHHHH
Confidence 33556778899999999998764 7777766522 2 23355666899999999854322111100 011222222
Q ss_pred H---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 131 A---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 131 ~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
. .....++-|-+..|+. ++.+..+..-.+..-|-||.+++++-
T Consensus 205 ~aA~~A~~lGL~VnAGHGL~-y~Nv~~ia~ip~i~ElnIGHaiIa~A 250 (278)
T 3gk0_A 205 TGVDAGIALGLKVNAGHGLH-YTNVQAIAALPGIAELNIGHAIVAHA 250 (278)
T ss_dssp HHHHHHHHTTCEEEECTTCC-TTTHHHHHTCTTEEEEEECHHHHHHH
T ss_pred HHHHHHHHcCCEEecCCCCC-HHHHHHHHhCCCCeEEecCHHHHHHH
Confidence 2 2234577787877773 45555443335788899999988654
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.14 Score=45.51 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|.|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPTLT-EEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD 97 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCC-HHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Confidence 555667888999999999999988877643211 011224455555443 58987554444445554333 446999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 98 avlv~~P~y~~~s 110 (297)
T 2rfg_A 98 AVLCVAGYYNRPS 110 (297)
T ss_dssp EEEECCCTTTCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999999887664
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.54 Score=39.99 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=68.8
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 64 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
..++++.+.+. |+..=+|. .+.++..++++.+.+.|++.|.+.-++ +...+.++++++..+--+++.
T Consensus 16 ~~~~~~~l~~~---~ii~V~r~-~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~~~iga 82 (225)
T 1mxs_A 16 AARIDAICEKA---RILPVITI-AREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRPELCVGA 82 (225)
T ss_dssp HHHHHHHHHHH---SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCcccEEee
Confidence 44455555443 44444443 466788999999999999999997432 223467887877764345666
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
|-+.+.+++..+++ .|||+|.+|- .++.+..
T Consensus 83 gtvl~~d~~~~A~~-aGAd~v~~p~---~d~~v~~ 113 (225)
T 1mxs_A 83 GTVLDRSMFAAVEA-AGAQFVVTPG---ITEDILE 113 (225)
T ss_dssp ECCCSHHHHHHHHH-HTCSSEECSS---CCHHHHH
T ss_pred CeEeeHHHHHHHHH-CCCCEEEeCC---CCHHHHH
Confidence 77999999999998 5999999873 4665544
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.79 Score=40.66 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=84.5
Q ss_pred ecCCCHHHHHHHHHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-Chhh
Q 023070 15 FCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQD 91 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~ 91 (287)
+...|+-. |++++ .|||+|=+- .++-. .-|+-....-..+.+...+++|.+.+++||++.+-.|+ +..+
T Consensus 24 ~~a~D~~s----A~~~~~aG~~ai~vsg~~~a~----~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~ 95 (295)
T 1s2w_A 24 MEAHNGLS----ARIVQEAGFKGIWGSGLSVSA----QLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN 95 (295)
T ss_dssp EEECSHHH----HHHHHHHTCSCEEECCHHHHH----TC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred ecCCCHHH----HHHHHHcCCCEEEeChHHHHH----hCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHH
Confidence 44456544 44443 488888775 22221 11122222334556677778888888999999998874 3456
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCC------CCc-cc--cHHHHHHHHhhC---CCcEEEecCCC----CHHHHH--
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKF-RA--DWNAIKAVKNAL---RIPVLANGNVR----HMEDVQ-- 153 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~-~~--~~~~i~~i~~~~---~ipVi~nGgI~----s~~da~-- 153 (287)
+.+.++.+.++|+.+|.+-+.....+-+ ... +. ..+.|+.++++- +.-|++=.+-. ..+++.
T Consensus 96 v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R 175 (295)
T 1s2w_A 96 ARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKR 175 (295)
T ss_dssp HHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHH
Confidence 7788999999999999997654211100 000 11 133444454442 23344433332 124443
Q ss_pred -HHHHhcCccEEEEehhhhhCccchhchh
Q 023070 154 -KCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 154 -~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+.+.|||+|++=- .+.++..++++.
T Consensus 176 a~ay~eAGAd~i~~e~-~~~~~~~~~~i~ 203 (295)
T 1s2w_A 176 AEAYRNAGADAILMHS-KKADPSDIEAFM 203 (295)
T ss_dssp HHHHHHTTCSEEEECC-CSSSSHHHHHHH
T ss_pred HHHHHHcCCCEEEEcC-CCCCHHHHHHHH
Confidence 223346999999821 133455555543
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.78 Score=41.86 Aligned_cols=81 Identities=10% Similarity=-0.041 Sum_probs=56.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.-.++++.+.+.+ .+||.+-+. +.+..+++++
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~G----------TTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg-~~st~eai~l 146 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGG----------TTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTG-SNSTREAIHA 146 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc----------cccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecC-CCCHHHHHHH
Confidence 6677777776 5678999998872 123333334444456666655544 488888752 2467889999
Q ss_pred HHHHHHcCCCEEEEe
Q 023070 96 AKMLEDAGCSLLAVH 110 (287)
Q Consensus 96 a~~l~~~G~~~I~vh 110 (287)
++.+++.|+|++.+.
T Consensus 147 a~~A~~~Gadavlvv 161 (360)
T 4dpp_A 147 TEQGFAVGMHAALHI 161 (360)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEEc
Confidence 999999999999775
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.13 Score=46.08 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+-|-|.+..... .....+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|||
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls-~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGAYLS-DPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 455667888999999999999988877643211 011224455555543 58988765544556555443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+..+.|..|.
T Consensus 122 avlv~~P~y~~~s 134 (315)
T 3na8_A 122 AVMVLPISYWKLN 134 (315)
T ss_dssp EEEECCCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998887765
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.47 Score=41.52 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=47.6
Q ss_pred CHHHHHH-HHHHHcCCCCEEEEeccCChhhhhcCcccccc---cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLN-AARRVEPYCDYVDINLGCPQRIARRGNYGAFL---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~-aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l---~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+ |-+++++|+|.|||..-+--+ |+.. ....+.+.-+++++++ .++||+|..+- .+
T Consensus 28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRP-------ga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~-------~~ 92 (270)
T 4hb7_A 28 NVETAINRVKAMIDEGADIIDVGGVSTRP-------GHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFR-------SE 92 (270)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCCCST-------TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC-------HH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC-------CCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCC-------HH
Confidence 3444433 334678899999997322112 2222 2344567777788765 58999998432 24
Q ss_pred HHHHHHHcCCCEE-EEec
Q 023070 95 YAKMLEDAGCSLL-AVHG 111 (287)
Q Consensus 95 ~a~~l~~~G~~~I-~vh~ 111 (287)
.++...++|++.| .|++
T Consensus 93 Va~~al~aGa~iINDVs~ 110 (270)
T 4hb7_A 93 VAEACLKLGVDMINDQWA 110 (270)
T ss_dssp HHHHHHHHTCCEEEETTT
T ss_pred HHHHHHHhccceeccccc
Confidence 5677777888877 3443
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.33 Score=45.24 Aligned_cols=70 Identities=14% Similarity=0.320 Sum_probs=52.3
Q ss_pred CChhhHHHHHH-HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC-CCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAK-MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN-VRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~-~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg-I~s~~da~~~l~~~gad~V 164 (287)
|+.+++++++. .+++.++.+| ++.- .+.||+..+++++..++||.+.=- +.++.++.++++...+|.|
T Consensus 267 ~~~~~ai~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i 336 (427)
T 2pa6_A 267 LTREELLDYYKALVDEYPIVSI-------EDPF---HEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANAL 336 (427)
T ss_dssp ECHHHHHHHHHHHHHHSCEEEE-------ECCS---CTTCHHHHHHHHHHSSSEEEESTTTTTCHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHHhhCCCcEE-------EcCC---ChhhHHHHHHHHhhCCCeEEeCccccCCHHHHHHHHHhCCCCEE
Confidence 36667777754 7888876554 2211 135889999999999999977655 5669999999998789999
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 337 ~i 338 (427)
T 2pa6_A 337 LL 338 (427)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.46 Score=41.07 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcC---------------CCCccccHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---------------GKKFRADWNA 128 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~---------------~~~~~~~~~~ 128 (287)
.+.+..+++.-...+..-+-.| ++.+++.+.++.+++.|+|.|.+-.-..++.. +.....-++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~ 85 (262)
T 1rd5_A 6 SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEM 85 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3444454433233333333233 34578889999999999999998422211110 0000112467
Q ss_pred HHHHHhhCCCcEEEecCCCCHH---HHHHHHHhcCccEEEEe
Q 023070 129 IKAVKNALRIPVLANGNVRHME---DVQKCLEETGCEGVLSA 167 (287)
Q Consensus 129 i~~i~~~~~ipVi~nGgI~s~~---da~~~l~~~gad~VmiG 167 (287)
++++++.+++||++++.. ++. .+..+.+ .|+|+|.+.
T Consensus 86 i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~~-aGadgv~v~ 125 (262)
T 1rd5_A 86 LREVTPELSCPVVLLSYY-KPIMFRSLAKMKE-AGVHGLIVP 125 (262)
T ss_dssp HHHHGGGCSSCEEEECCS-HHHHSCCTHHHHH-TTCCEEECT
T ss_pred HHHHHhcCCCCEEEEecC-cHHHHHHHHHHHH-cCCCEEEEc
Confidence 888888889999987532 222 1223454 799999985
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.87 Score=39.99 Aligned_cols=121 Identities=13% Similarity=-0.005 Sum_probs=79.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
|.+.+.+-++ .++. +|+|=++- .-|-+..-..+.-.++++.+.+ .+||.+-+.. .+..+++++++
T Consensus 17 D~~~l~~lv~~li~~-v~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~--rvpviaGvg~-~~t~~ai~la~ 82 (283)
T 2pcq_A 17 DEEAFRELAQALEPL-VDGLLVYG----------SNGEGVHLTPEERARGLRALRP--RKPFLVGLME-ETLPQAEGALL 82 (283)
T ss_dssp CHHHHHHHHHHHGGG-SSCCEETC----------TTTTGGGSCHHHHHHHHHTCCC--SSCCEEEECC-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CCEEEECC----------cCcCchhcCHHHHHHHHHHHHh--CCcEEEeCCC-CCHHHHHHHHH
Confidence 6777877777 5667 89988762 2343444455666778887776 7888887632 45688999999
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee----cCC-CCHHHHHHHHH
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN----GNV-RHMEDVQKCLE 157 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n----GgI-~s~~da~~~l~ 157 (287)
.+++.|+|++-+..-....... ...-+++++.+.+ ++||+ +| .|+ -+++.+.++.+
T Consensus 83 ~A~~~Gadavlv~~P~y~~~~~--~~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~~~La~ 144 (283)
T 2pcq_A 83 EAKAAGAMALLATPPRYYHGSL--GAGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAVEALAP 144 (283)
T ss_dssp HHHHHTCSEEEECCCCTTGGGT--TTHHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHHHHHTT
T ss_pred HHHhcCCCEEEecCCcCCCCCC--HHHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHHHHHhc
Confidence 9999999999775322111000 0122456677776 78875 44 243 47777777654
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.6 Score=44.65 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.+.++|++.|.+..-... ...-++.++++++.. ++||++ |+|.+.+++..+.+ .|+|+|.+|-
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~-aGad~i~vg~ 326 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIE-AGANVVKVGI 326 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred cchHHHHHHHHhhccceEEecccccc------hhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHH-hCCCEEEECC
Confidence 35567788899999999999743211 123457889998876 478775 78999999999888 5999999854
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.23 Score=44.26 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. ++.|+|
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 111 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLT-SSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGAD 111 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSC-HHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCC-HHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 455667788889999999999998887643211 112234566666655 58988654444555554433 347999
Q ss_pred EEEEehhhhhC
Q 023070 163 GVLSAESLLEN 173 (287)
Q Consensus 163 ~VmiGR~~l~n 173 (287)
++|+-.+.|..
T Consensus 112 avlv~~P~y~~ 122 (307)
T 3s5o_A 112 AAMVVTPCYYR 122 (307)
T ss_dssp EEEEECCCTTG
T ss_pred EEEEcCCCcCC
Confidence 99999887754
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.15 Score=45.18 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.=|=.+.+++.+.. +..|+|
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls-~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 97 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPTLS-KSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD 97 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSC-HHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 556677889999999999999988877643211 011224455555443 58987543433445554333 447999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+-.+.|..|.
T Consensus 98 avlv~~P~y~~~s 110 (292)
T 2vc6_A 98 GVLIVSPYYNKPT 110 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999999887664
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.06 E-value=1.6 Score=37.14 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHH---HH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh--h
Q 023070 17 ANDPEILLNAAR---RV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL--Q 90 (287)
Q Consensus 17 g~~~~~~~~aA~---~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~--~ 90 (287)
-++.+++....+ .+ +.|+|+|-+-+.-|. | .=|.+.+.++++... +.+++.-. ..+.. .
T Consensus 69 ~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d--------g---~iD~~~~~~Li~~a~---~~~vTFHR-AFD~~~~~ 133 (224)
T 2bdq_A 69 VYNDLELRIMEEDILRAVELESDALVLGILTSN--------N---HIDTEAIEQLLPATQ---GLPLVFHM-AFDVIPKS 133 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT--------S---SBCHHHHHHHHHHHT---TCCEEECG-GGGGSCTT
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC--------C---CcCHHHHHHHHHHhC---CCeEEEEC-chhccCCc
Confidence 366666665443 33 469999987655332 1 136777888887643 57777653 33222 4
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+..+..+.+.+.|++.|--||..... +.....+.++++.+. -++-|++.|||+. +.+.++++.+|++-+=.
T Consensus 134 d~~~ale~L~~lGv~rILTSG~~~~~----~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~-~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 134 DQKKSIDQLVALGFTRILLHGSSNGE----PIIENIKHIKALVEYANNRIEIMVGGGVTA-ENYQYICQETGVKQAHG 206 (224)
T ss_dssp THHHHHHHHHHTTCCEEEECSCSSCC----CGGGGHHHHHHHHHHHTTSSEEEECSSCCT-TTHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHcCCCEEECCCCCCCC----cHHHHHHHHHHHHHhhCCCeEEEeCCCCCH-HHHHHHHHhhCCCEEcc
Confidence 56667888899999999766654321 113446777777553 2577888899964 88888887789988764
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.26 Score=45.06 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=56.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|+++|.+.|-|.+..... ..-..+.++.+.+.+ ++|||+.=|=.+.+++.+.. ++.|||
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls-~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 156 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMH 156 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccChhhCC-HHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 455667888899999999999988877643211 011223455555543 58998754444555555443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+-...+..|.
T Consensus 157 avlvv~PyY~k~s 169 (360)
T 4dpp_A 157 AALHINPYYGKTS 169 (360)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988776654
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=93.04 E-value=3.9 Score=38.01 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=65.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc---EEEEecC
Q 023070 11 LFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP---VSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p---v~vKiR~ 85 (287)
-+.+++.++++.+..+.+.+++ + .-.|++..+ .- +.+|++.-.+++.+..++.++.+..++| |.+-.-=
T Consensus 15 av~afn~~n~e~i~Ail~aAee~~sPVIi~~s~~--~v----~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDH 88 (420)
T 2fiq_A 15 GICSVCSAHPLVIEAALAFDRNSTRKVLIEATSN--QV----NQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDH 88 (420)
T ss_dssp CEEEECCCCHHHHHHHHHHTTTSCCCEEEEEETT--TB----STTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEcChh--hh----hhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCC
Confidence 4678889999988877777765 4 334444422 21 2234544446888999999998888888 8877543
Q ss_pred CCCh-----------hhHHHHHHHHHHcCCCEEEEeccC
Q 023070 86 FPNL-----------QDTIKYAKMLEDAGCSLLAVHGRT 113 (287)
Q Consensus 86 g~~~-----------~~~~~~a~~l~~~G~~~I~vh~rt 113 (287)
|.+. ..+.+.++.+.++|.+.|.+-+-.
T Consensus 89 g~~~~w~~~~~~~am~~a~e~i~~aI~aGFtSVMiD~S~ 127 (420)
T 2fiq_A 89 LGPNCWQQENVDAAMEKSVELVKAYVRAGFSKIHLDASM 127 (420)
T ss_dssp ESSGGGTTSBHHHHHHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred CCCccccccchhhhhhhHHHHHHHHHHhCCCEEEECCCC
Confidence 3222 234477888899999999997553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 287 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 3e-23 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-07 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 4e-07 | |
| d1h5ya_ | 252 | c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz | 4e-06 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 6e-06 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 4e-05 | |
| d1jvna1 | 323 | c.1.2.1 (A:230-552) Cyclase subunit (or domain) of | 4e-05 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 5e-05 | |
| d1ka9f_ | 251 | c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz | 6e-04 | |
| d1z41a1 | 337 | c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill | 9e-04 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 0.001 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 0.001 | |
| d1vzwa1 | 239 | c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi | 0.002 | |
| d1xm3a_ | 251 | c.1.31.1 (A:) Thiazole biosynthesis protein ThiG { | 0.002 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 94.7 bits (234), Expect = 3e-23
Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 13/261 (4%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
P +R + VQ ++P L AAR + ++D+N GCP R + G L+ +L +
Sbjct: 52 PHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFR 111
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+V +L +++ S K R+ + + ++L + G + +H RT RA+
Sbjct: 112 YIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRAE 169
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W A+ ++ + V +G++ ED ++ LEE+GC+G+L A + P +F +
Sbjct: 170 WKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR 227
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 245
S + S+ + +L+L K + + + K L + + G R
Sbjct: 228 ---SGKYSEPSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLKGARRFREK 283
Query: 246 QNRLT-----FEFLYNLVDRL 261
++ E YN + +
Sbjct: 284 VMKIEEVQILKEMFYNFIKEV 304
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 44/210 (20%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARR------------- 50
D PL I+ A + N +
Sbjct: 13 ALPDEPLH------SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRD 66
Query: 51 -GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-------------- 95
+ F+ V L+E + + + + R L + + Y
Sbjct: 67 YDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI 126
Query: 96 -----AKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 148
AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186
Query: 149 MEDVQKCLEETGCEGVLSAESLLENPALFA 178
+ ++ + + G + ++ P
Sbjct: 187 PDMYKRVM-DLGVHCSVVGGAIT-RPKEIT 214
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 48.0 bits (113), Expect = 4e-07
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 25/176 (14%)
Query: 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
+ N + + + + D +++NL CP + RG A D LV+++ +
Sbjct: 108 SIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPE-LVRNICRWV 166
Query: 72 ALNLNVPVSCKIRVFPNLQDTIKYA--KMLEDAGCSLLAVHGRTRDEKDGKKFRA----- 124
+ +P K+ +I A + D + V G + DG + A
Sbjct: 167 RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGK 226
Query: 125 ---------------DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 164
A+ + AL P+LA G + E + L +G +
Sbjct: 227 RTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFL-HSGASVL 281
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 45.0 bits (106), Expect = 4e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 151 DVQKCLEETGCEGVLSAESLLEN 173
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 44.6 bits (104), Expect = 6e-06
Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 25/184 (13%)
Query: 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 72
V + + A +++N+ CP + + + +LV+
Sbjct: 105 VAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACK 160
Query: 73 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------------- 119
VP+ K+ PN+ D + AK +E AG L + +
Sbjct: 161 AVSKVPLYVKL--SPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITG 218
Query: 120 -----KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
I V + IP++ G V + +DV + G V + +P
Sbjct: 219 GLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADP 277
Query: 175 ALFA 178
+
Sbjct: 278 FVCP 281
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 132
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 133 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 42.1 bits (98), Expect = 4e-05
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 19 DPEILLNAARRVEPYCDYVDINLGC-PQRI-----ARRGNYGAFLMDNLPLVKSLVEKLA 72
E R + I+ Q + +R + + ++
Sbjct: 141 AAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 200
Query: 73 LNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
C I R +L + + E G + ++ +D + D I
Sbjct: 201 GEKYCWYQCTIKGGRESRDLGV-WELTRACEALGAGEILLNCIDKDGSNS---GYDLELI 256
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.4 bits (96), Expect = 5e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 151
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 152 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 151 DVQKCLEETGCEGVLSAESLLEN 173
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 7/157 (4%)
Query: 27 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86
+ Y+ P R YG + ++ +++++ + P+ ++
Sbjct: 159 VIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSAS 218
Query: 87 PNLQD------TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIP 139
I +AK +++ G L+ D F + + ++ +
Sbjct: 219 DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMA 278
Query: 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A G + ++ L+ + + LL +P
Sbjct: 279 TGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF 315
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 88 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 144
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 145 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 253 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 284
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC--LEETGCEGVLSAESLLEN 173
KDG + +K V A PV+A+G V ++D++ L G EG + ++L
Sbjct: 169 KDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 227
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPV 140
V P D + A+ LE+ G + G + + + ++PV
Sbjct: 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPI----GSGQGILNPLNLSFIIEQAKVPV 180
Query: 141 LANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 183
+ + + +D + E G +GVL +A S ++P A + A
Sbjct: 181 IVDAGIGSPKDAAYAM-ELGADGVLLNTAVSGADDPVKMARAMKLA 225
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.94 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.93 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.92 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.91 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.89 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.87 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.84 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.81 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.8 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.77 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.75 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.7 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.7 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.65 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.63 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.33 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.27 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.19 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 99.13 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.11 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.08 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.06 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.0 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.94 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 98.84 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.68 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 98.65 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.57 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.56 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.56 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 98.49 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.49 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 98.48 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.48 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 98.47 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.46 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.44 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.42 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.41 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.38 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 98.35 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 98.35 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 98.35 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.31 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 98.29 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.29 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 98.29 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.28 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.25 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 98.24 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.22 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 98.21 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.19 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 98.14 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.13 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.11 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 98.06 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 98.04 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 98.03 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.01 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 97.97 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.97 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 97.96 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 97.94 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 97.94 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 97.9 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 97.87 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.85 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.83 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 97.75 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 97.72 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 97.69 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.6 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 97.57 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.52 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 97.5 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.49 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 97.45 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.37 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 97.33 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 97.29 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 97.27 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 97.23 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 97.06 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.03 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.01 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 96.98 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 96.97 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.93 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.93 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.88 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 96.82 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 96.78 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 96.77 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.74 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.67 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.66 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 96.66 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 96.57 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 96.57 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.52 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 96.5 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 96.44 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.39 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.33 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 96.31 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.28 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.2 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.12 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.09 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 95.97 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 95.91 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 95.87 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 95.75 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 95.74 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 95.73 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 95.65 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 95.63 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 95.58 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 95.29 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 95.25 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 95.12 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 95.06 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 94.99 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 94.97 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 94.97 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 94.91 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 94.82 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 94.74 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 94.68 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 94.62 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 94.58 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 94.52 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.51 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 94.09 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 94.05 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.98 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.73 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 93.7 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 93.62 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 93.6 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.47 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 93.32 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 93.23 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 93.12 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.01 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.93 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 92.65 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 92.6 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 92.58 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 92.42 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 92.19 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 92.08 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 91.39 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 91.21 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 90.88 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 90.61 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 90.31 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 90.23 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 90.05 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 90.05 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 89.92 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 89.61 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 89.1 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 88.43 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 87.72 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 87.58 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 87.49 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 87.45 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 87.31 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 87.26 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 86.92 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 86.92 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 86.8 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 86.79 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 86.72 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 86.7 | |
| d2a21a1 | 263 | 3-deoxy-D-manno-octulosonate 8-phosphate synthase | 86.52 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 86.38 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 86.11 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 85.47 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 85.42 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 85.4 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 84.72 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 84.61 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 84.6 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 84.12 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 83.34 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 83.22 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 83.11 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 82.52 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 82.3 | |
| d2btma_ | 251 | Triosephosphate isomerase {Bacillus stearothermoph | 81.73 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 81.34 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 81.18 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 80.85 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 80.59 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 80.58 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 80.54 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 80.48 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 80.17 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.7e-57 Score=410.20 Aligned_cols=251 Identities=22% Similarity=0.350 Sum_probs=220.4
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
.+++.|+|+++||+|+||+.+++||++++.|+|+||||||||++++.++++|++||++|+++.++++++++.+++|||||
T Consensus 49 ~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK 128 (305)
T d1vhna_ 49 LPQPHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVK 128 (305)
T ss_dssp SCCTTCTTEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccCCCCCCeEEEEeccchhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccc
Confidence 35788999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+|+|++..+..++++.++++|++.|+|||||+.+. +.+++||+.|+++++ ++|||+||||.|++|+.++++.+|||
T Consensus 129 ~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~--~~~~a~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~d 204 (305)
T d1vhna_ 129 TRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCD 204 (305)
T ss_dssp EESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCS
T ss_pred cccCcccchhhHHHHHHHHhCCcEEEechhhhhhc--cccchhhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCC
Confidence 99999988899999999999999999999999865 556899999988876 69999999999999999999999999
Q ss_pred EEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhC-CC--chHHHHHHHHHHHHhhhcCChHH
Q 023070 163 GVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PV--PWRMIRSHVHKLLGEWFRIQPGV 239 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~~r~~~~~~~~~~~~~~~~~ 239 (287)
|||||||++.|||+|.+++... .+++ ...++..++.+++.+|++++.++ +. .+..+|+|+.||+.+ +++...+
T Consensus 205 gVMiGRgal~nP~if~~i~~~l--~~~~-~~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~~~~kg-~p~ak~~ 280 (305)
T d1vhna_ 205 GLLVARGAIGRPWIFKQIKDFL--RSGK-YSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKD-LKGARRF 280 (305)
T ss_dssp EEEESGGGTTCTTHHHHHHHHH--HHSC-CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTT-CTTHHHH
T ss_pred eEehhHHHHHhhhHhhhhhhhh--cCCC-cccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHcC-CCcHHHH
Confidence 9999999999999999986432 2232 33456678889999999876554 42 266789999887765 5677789
Q ss_pred HHHHHhcchhcHHHHHHHHHHHHH
Q 023070 240 REDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 240 r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
|+.|++.+ +.+++.++++++.+
T Consensus 281 R~~l~~~~--~~~el~~~l~~~~~ 302 (305)
T d1vhna_ 281 REKVMKIE--EVQILKEMFYNFIK 302 (305)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHHHhCC--CHHHHHHHHHHHHH
Confidence 99999886 88888888887643
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.94 E-value=5.4e-26 Score=204.60 Aligned_cols=169 Identities=17% Similarity=0.272 Sum_probs=140.8
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc--CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 6 PEDRPLFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~~~--~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
..+.|+++||+|++++++.++++.+. .++|+||||++||+... .+.....+++.+.+++.++++..++|+.+|+
T Consensus 96 ~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl 171 (311)
T d1ep3a_ 96 FPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKH----GGQAFGTDPEVAAALVKACKAVSKVPLYVKL 171 (311)
T ss_dssp CTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGG----TTEEGGGCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred cCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccc----cccccccCHHHHHHHHHHHHhccCCCeeeee
Confidence 34789999999999999999988664 37999999999997532 2455678999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------C---CCCc----cccHHHHHHHHhhCCCcEEEecC
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------D---GKKF----RADWNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~---~~~~----~~~~~~i~~i~~~~~ipVi~nGg 145 (287)
+.+.. +..++++.++++|++.+++++++.... . ..++ +..|+.++++++.+++|||+|||
T Consensus 172 ~~~~~--~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GG 249 (311)
T d1ep3a_ 172 SPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGG 249 (311)
T ss_dssp CSCSS--CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSS
T ss_pred ccccc--chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCC
Confidence 98653 456789999999999999976543210 0 0111 23588999999999999999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|.|++|+.+++. .|||+||+||++|.+||+|.++.
T Consensus 250 I~s~~Da~~~i~-~GAd~V~ig~~~~~~P~i~~~I~ 284 (311)
T d1ep3a_ 250 VANAQDVLEMYM-AGASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp CCSHHHHHHHHH-HTCSEEEECTHHHHCTTHHHHHH
T ss_pred cCCHHHHHHHHH-cCCCEEEecHHHHcCChHHHHHH
Confidence 999999999997 69999999999999999998764
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1.3e-25 Score=204.83 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=142.3
Q ss_pred HHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----
Q 023070 21 EILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----- 85 (287)
++|++||+.+ ++|||+||||. .||..|.|+|.||+++.++.+++.||+++|++.++.|+.++++.
T Consensus 143 ~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 143 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD 222 (337)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEeccccccc
Confidence 8999999965 57999999994 49999999999999999999999999999999999999999886
Q ss_pred -CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 -g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+.++.+++++.++++|++++.++.+...... .......++..+.+++.+++||+++|+|.|+++++++|+++.||.
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~ 302 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADL 302 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSE
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcce
Confidence 356778999999999999999999866543221 111135678889999999999999999999999999999877999
Q ss_pred EEEehhhhhCccchhchhh
Q 023070 164 VLSAESLLENPALFAGFRT 182 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~ 182 (287)
|++||++++||+|+.+++.
T Consensus 303 V~~gR~~iadPd~~~k~~~ 321 (337)
T d1z41a1 303 IFIGRELLRDPFFARTAAK 321 (337)
T ss_dssp EEECHHHHHCTTHHHHHHH
T ss_pred ehhhHHHHhCchHHHHHHh
Confidence 9999999999999998865
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=4.8e-25 Score=200.48 Aligned_cols=162 Identities=12% Similarity=0.170 Sum_probs=136.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+||||.+ ||..|.|+|.||+++.+|.+++.|++++|++.++ ++|.+|+..
T Consensus 141 ~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~ 220 (330)
T d1ps9a1 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccc
Confidence 7899999965 579999999954 9999999999999999999999999999999884 677777754
Q ss_pred ---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC---C--CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 86 ---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---G--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 ---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~---~--~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
+.+.+++.++++.+++.|++++.++........ . .+........+++++.+++||+++|+|+|+++++++|+
T Consensus 221 ~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~ 300 (330)
T d1ps9a1 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILS 300 (330)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHH
Confidence 456788999999999999999998765433211 1 11123345678899999999999999999999999999
Q ss_pred hcCccEEEEehhhhhCccchhchhh
Q 023070 158 ETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++.||+|++||++++||+|+.+++.
T Consensus 301 ~g~~D~V~~gR~~iadP~~~~k~~~ 325 (330)
T d1ps9a1 301 RGDADMVSMARPFLADAELLSKAQS 325 (330)
T ss_dssp TTSCSEEEESTHHHHCTTHHHHHHT
T ss_pred CCCcchhHhhHHHHhChhHHHHHHc
Confidence 8779999999999999999998864
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.91 E-value=5.4e-24 Score=194.26 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=133.3
Q ss_pred HHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC--
Q 023070 21 EILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF-- 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g-- 86 (287)
++|++||+.+ ++|||+||||.+ ||..|.|+|.||+++.+|.+++.||+++|++.+ ++||.+|+...
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~ 228 (340)
T d1djqa1 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (340)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccc
Confidence 5888999866 569999999954 999999999999999999999999999999988 57888887641
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~ 154 (287)
.+.+.....+..+++.|+|.+.|+...... .........+++.+.+++.+++||+++|+|+|++++++
T Consensus 229 ~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~ 308 (340)
T d1djqa1 229 YGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIE 308 (340)
T ss_dssp SCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHH
T ss_pred ccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHH
Confidence 122334555677889999999997653221 11111235678889999999999999999999999999
Q ss_pred HHHhcCccEEEEehhhhhCccchhchhh
Q 023070 155 CLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+|+++.||+|++||++++||+|+++++.
T Consensus 309 ~l~~G~aDlV~~gR~~iadPdl~~k~~~ 336 (340)
T d1djqa1 309 IVTKGYADIIGCARPSIADPFLPQKVEQ 336 (340)
T ss_dssp HHHTTSCSBEEESHHHHHCTTHHHHHHT
T ss_pred HHHCCCccchhhHHHHHHCccHHHHHHc
Confidence 9998679999999999999999998875
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.89 E-value=1.1e-22 Score=183.30 Aligned_cols=170 Identities=17% Similarity=0.312 Sum_probs=133.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
..+++....|.+++++.++++.++ .|+|+|+||++||+....++ +|..+..+++.+.++++++++.+++||.+|++..
T Consensus 103 ~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~-~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~ 181 (312)
T d1gtea2 103 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERG-MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPN 181 (312)
T ss_dssp SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSC
T ss_pred cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccc-cchhhhhhHHHHHHHHHHHhhccCCceeeccccc
Confidence 344556678899999999999765 59999999999999644443 6888889999999999999999999999999864
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------------cCCCCcc----ccHHHHHHHHhhC-CCcEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------------KDGKKFR----ADWNAIKAVKNAL-RIPVL 141 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------------~~~~~~~----~~~~~i~~i~~~~-~ipVi 141 (287)
. .+..++++.++++|++.|+++++.... ..+.+|+ ..++.++++++.+ ++|||
T Consensus 182 ~--~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi 259 (312)
T d1gtea2 182 V--TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPIL 259 (312)
T ss_dssp S--SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEE
T ss_pred c--hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEE
Confidence 3 456788999999999999997653210 0011122 2367788888887 59999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
++|||.|.+|+.+++. .|||+||+|++++.+ |.++.++.
T Consensus 260 ~~GGI~~~~d~~~~l~-aGA~~Vqv~ta~~~~G~~~i~~i~ 299 (312)
T d1gtea2 260 ATGGIDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDYC 299 (312)
T ss_dssp EESSCCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHHH
T ss_pred EEcCCCCHHHHHHHHH-cCCCeeEECHhhhccChHHHHHHH
Confidence 9999999999999998 699999999999865 77777653
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.87 E-value=8.3e-22 Score=181.08 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=132.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecC----
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV---- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~---- 85 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ -+|.+++..
T Consensus 160 ~~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~ 239 (363)
T d1vyra_ 160 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 239 (363)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccc
Confidence 5899999965 5699999999 559999999999999999999999999999999884 458888865
Q ss_pred ------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+.+.+++.++++.+++.|+|+|.++...... +.+....+.+.+++.+++||+++|+ .|++.++++|+++
T Consensus 240 ~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~----~~~~~~~~~~~~~~~~~~~vi~~G~-~t~~~ae~~l~~G 314 (363)
T d1vyra_ 240 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG----GKPYSEAFRQKVRERFHGVIIGAGA-YTAEKAEDLIGKG 314 (363)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB----CCCCCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHTT
T ss_pred cchhhcccchHHHHHHHHHHHhcCCeeeecccCCccC----CccccHHHHHHHHHhcCceEEecCC-CCHHHHHHHHHCC
Confidence 2234578899999999999999998654332 1134556677888889999998775 5899999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||.|.+||++++||+|+.+++.
T Consensus 315 ~~DlV~~gR~liadP~~~~K~~~ 337 (363)
T d1vyra_ 315 LIDAVAFGRDYIANPDLVARLQK 337 (363)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHH
T ss_pred CcceehhhHHHHHCccHHHHHHh
Confidence 79999999999999999998875
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=1.1e-20 Score=174.21 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=127.6
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCC--
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g-- 86 (287)
.++|++||+++ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|+++++ ..|.+++...
T Consensus 162 i~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~ 241 (374)
T d1gwja_ 162 VEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLE 241 (374)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecc
Confidence 46899999965 5799999999 559999999999999999999999999999999884 4455665431
Q ss_pred ---CC----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 ---PN----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ---~~----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.. ......+++.++..|++++.++........ . .....+.+.+++.+++||+++|+| +++.++++|+++
T Consensus 242 ~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g 317 (374)
T d1gwja_ 242 LFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD-I--TYPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDN 317 (374)
T ss_dssp CTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC-C--CCCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTT
T ss_pred ccCCcccchHHHHHHhhccccccCceEEEeccCcccCCC-c--chhHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcC
Confidence 11 113455677889999999999854332211 1 112234577889999999999999 799999999988
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||.|++||++++||+|..+++.
T Consensus 318 ~aDlV~~gR~~iadPd~~~K~~~ 340 (374)
T d1gwja_ 318 TADAVAFGRPFIANPDLPERFRL 340 (374)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHH
T ss_pred CCcEehhhHHHHHCccHHHHHHc
Confidence 89999999999999999999876
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.81 E-value=3e-20 Score=170.64 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=123.4
Q ss_pred HHHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVF-- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g-- 86 (287)
.++|++||+.+ ++|||+|+||+ .+|..|.|+|.||+++.+|.+++.||+++|++.++ .+|.+++...
T Consensus 157 i~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~ 236 (364)
T d1icpa_ 157 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAH 236 (364)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccccc
Confidence 48999999965 57999999994 59999999999999999999999999999999884 5677777542
Q ss_pred -----CChhhH--HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 -----PNLQDT--IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 -----~~~~~~--~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+.++. +..++.+...+++.+.+.......... ....++....+++.++.||+++|++ +++++++++.++
T Consensus 237 ~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g 313 (364)
T d1icpa_ 237 YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWE--KIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIED 313 (364)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTT
T ss_pred ccCCcCcchHHHHHHHHHHhhccceeeeeeecCccccccc--ccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcC
Confidence 233333 445555666777777776443322111 1122344567788889999999986 789999999988
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+|++||++++||+|..+++.
T Consensus 314 ~aD~V~~gR~~iadPd~~~k~~~ 336 (364)
T d1icpa_ 314 RADLVAYGRLFISNPDLPKRFEL 336 (364)
T ss_dssp SCSEEEESHHHHHCTTHHHHHHH
T ss_pred CCceehhHHHHHHCccHHHHHHc
Confidence 99999999999999999998875
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.80 E-value=5.8e-20 Score=170.58 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=119.1
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~-- 87 (287)
++|++||+++ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++++ ..||.+|+....
T Consensus 171 ~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~ 250 (399)
T d1oyaa_ 171 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF 250 (399)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcc
Confidence 5888999865 5799999999 45999999999999999999999999999999987 358999986521
Q ss_pred ----C------hhhHHHHHHHHHHcC-----CCEEEEeccCCCCcC--CCCccccHHHHHHHHhhCCCcEEEecCCCCHH
Q 023070 88 ----N------LQDTIKYAKMLEDAG-----CSLLAVHGRTRDEKD--GKKFRADWNAIKAVKNALRIPVLANGNVRHME 150 (287)
Q Consensus 88 ----~------~~~~~~~a~~l~~~G-----~~~I~vh~rt~~~~~--~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~ 150 (287)
+ ..+..+++..++..+ .+.+.+......... ...+.........+++.+++|||++|+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PVi~~G~i~~~~ 330 (399)
T d1oyaa_ 251 NSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHP 330 (399)
T ss_dssp TTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSCTTCH
T ss_pred cccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHhCCCEEEECCCCChH
Confidence 1 123445566665543 344444332211110 01111111223446778899999999999877
Q ss_pred HHHHHHHhcCccEEEEehhhhhCccchhchhhh
Q 023070 151 DVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183 (287)
Q Consensus 151 da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~ 183 (287)
++.+.+.+.+||.|.+||++++||+|+.+++..
T Consensus 331 ~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G 363 (399)
T d1oyaa_ 331 EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG 363 (399)
T ss_dssp HHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred HHHHHHHcCCCeEhHHHHHHHHCccHHHHHHcC
Confidence 777777667899999999999999999998763
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.77 E-value=4.7e-19 Score=163.48 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=119.3
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g- 86 (287)
.+.|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|+++++ .++..++...
T Consensus 158 i~~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d 237 (380)
T d1q45a_ 158 VEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAID 237 (380)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccc
Confidence 47899999966 4699999999 559999999999999999999999999999999884 4444443221
Q ss_pred -----CC--hhhHHH------HHHHHHHcCCCEEEEeccCCCCc----CCCCc--cccHHHHHHHHhhCCCcEEEecCCC
Q 023070 87 -----PN--LQDTIK------YAKMLEDAGCSLLAVHGRTRDEK----DGKKF--RADWNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 87 -----~~--~~~~~~------~a~~l~~~G~~~I~vh~rt~~~~----~~~~~--~~~~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
.+ .+...+ ....+...+++++.+........ ....+ .......+.+++.+++||+++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~- 316 (380)
T d1q45a_ 238 HLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF- 316 (380)
T ss_dssp GGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-
T ss_pred ccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-
Confidence 11 111222 23334457888998864322111 01111 122345677888899999999998
Q ss_pred CHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++.++++++++.||.|.+||++++||+|.++++.
T Consensus 317 ~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~ 351 (380)
T d1q45a_ 317 NKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKI 351 (380)
T ss_dssp CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHT
T ss_pred CHHHHHHHHHcCCccchhhhHHHHHCccHHHHHhc
Confidence 69999999998889999999999999999998874
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.75 E-value=1.2e-17 Score=149.52 Aligned_cols=170 Identities=16% Similarity=0.283 Sum_probs=132.0
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc-C-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 6 PEDRPLFVQFCANDPEILLNAARRVE-P-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~~~-~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
..+.|++++|.|.+.+++...++.++ . ++|.+|||++||+... +..+..+++.+.++++++++..++||.+|+
T Consensus 91 ~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~-----~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl 165 (311)
T d1juba_ 91 AQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPG-----EPQLAYDFEATEKLLKEVFTFFTKPLGVKL 165 (311)
T ss_dssp CSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSS-----CCCGGGCHHHHHHHHHHHTTTCCSCEEEEE
T ss_pred ccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccc-----cccccccHHHHHHHHHHhhcccccceeecc
Confidence 45789999999999999998887554 4 5899999999998421 223457899999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCC--------------Cc---CCCCcc----ccHHHHHHHHhhC--CCcE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------EK---DGKKFR----ADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------~~---~~~~~~----~~~~~i~~i~~~~--~ipV 140 (287)
....+..+...+++.+.+.|++.++....... .. .+.+++ ..+..+.++++.+ ++||
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~I 245 (311)
T d1juba_ 166 PPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQI 245 (311)
T ss_dssp CCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEE
T ss_pred cccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeE
Confidence 88776666777888889999999876532110 00 011111 1345667777765 5999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhh-hCccchhchh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFR 181 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l-~nP~lf~~~~ 181 (287)
|++|||+|++|+.+++. .|||.|+++++++ ..|+++.++.
T Consensus 246 ig~GGI~s~~Da~~~i~-aGA~~Vql~tal~~~Gp~~i~~i~ 286 (311)
T d1juba_ 246 IGTGGIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDRII 286 (311)
T ss_dssp EEESSCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHH
T ss_pred EecCCcCCHHHHHHHHH-cCCCceeeeHhhHhcChHHHHHHH
Confidence 99999999999999998 5999999999985 5699887663
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=9.6e-17 Score=145.42 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=124.3
Q ss_pred CCCCCEEEEecCCC-------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHH-------
Q 023070 6 PEDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL------- 71 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~-------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v------- 71 (287)
..+.|+++.|.++. .+++..+.+.++.++|++|||++||+.. |...+.+.+.+...+..+
T Consensus 131 ~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~~------g~~~~~~~~~l~~~~~~~~~~~~~~ 204 (336)
T d1f76a_ 131 HYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDL 204 (336)
T ss_dssp CCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhhh------cccccccchhhccchhhhhhhhhhh
Confidence 45678999998875 5677777777888999999999999842 122223344433333322
Q ss_pred --hhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCcc----ccHHHHHHHHh
Q 023070 72 --ALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKN 134 (287)
Q Consensus 72 --~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~----~~~~~i~~i~~ 134 (287)
+...++||.+|+....+..+..++++.+.+.|++.++....+... ..+.+|+ ..+..++++++
T Consensus 205 ~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~ 284 (336)
T d1f76a_ 205 QAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSL 284 (336)
T ss_dssp HHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHH
T ss_pred hhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 234579999998876666788899999999999999885432210 1111222 23566777777
Q ss_pred hC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchh
Q 023070 135 AL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 181 (287)
Q Consensus 135 ~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~ 181 (287)
.+ ++|||++|||.|++|+.+++. .||+.|++|+++ +.+|.++.++.
T Consensus 285 ~~~~~ipIIG~GGI~s~~Da~e~i~-aGAsaVQv~Tal~~~Gp~ii~~I~ 333 (336)
T d1f76a_ 285 ELNGRLPIIGVGGIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKEIV 333 (336)
T ss_dssp HHTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHHHH
T ss_pred HcCCCCeEEEECCCCCHHHHHHHHH-cCCcHHHHHHHHHhcChHHHHHHH
Confidence 65 699999999999999999999 599999999997 68999999875
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.3e-16 Score=146.21 Aligned_cols=174 Identities=22% Similarity=0.224 Sum_probs=121.6
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHHHcCCCCEEEEeccCChhhh-hcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 7 EDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQRIA-RRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~~~~~g~d~IdiN~gcP~~~~-~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
.+.|++++|.++. .+++..+.+....++|.+++|+.||+... +.......+......+.+....++...++|+.
T Consensus 145 ~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~ 224 (367)
T d1d3ga_ 145 DGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVL 224 (367)
T ss_dssp TTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEE
T ss_pred cCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCccc
Confidence 4569999999852 35666677777889999999999999522 22111111111222222223333334578999
Q ss_pred EEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhC--CCcEEEe
Q 023070 81 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL--RIPVLAN 143 (287)
Q Consensus 81 vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~--~ipVi~n 143 (287)
+|+....+..+..++++.+.++|++.|++...+.... .+.+|. .....++.+++.+ ++|||++
T Consensus 225 vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~ 304 (367)
T d1d3ga_ 225 VKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGV 304 (367)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred cccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEE
Confidence 9998877777888999999999999998865432110 011111 2345667776655 6999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 181 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~ 181 (287)
|||.|++|+.+++. .|||.|++++++ +.+|.++.++.
T Consensus 305 GGI~s~~Da~e~i~-aGAs~VQi~Ta~~~~Gp~ii~~I~ 342 (367)
T d1d3ga_ 305 GGVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp SSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHH
T ss_pred CCCCCHHHHHHHHH-cCCCHHHhhHHHHhcCcHHHHHHH
Confidence 99999999999999 599999999996 68999998764
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.65 E-value=7e-16 Score=138.20 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=123.3
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHH----HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 6 PEDRPLFVQFCANDPEILLNAARR----VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~----~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
..+.|++++|.|...+++.+.++. .++++|+||||++||+.. + +..+-.+++.+.++++++++.+++|+.+
T Consensus 89 ~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~---~--~~~~~~~~~~~~~i~~~v~~~~~~pi~v 163 (312)
T d2b4ga1 89 YSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP---G--KPQVGYDFDTTRTYLQKVSEAYGLPFGV 163 (312)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST---T--CCCGGGCHHHHHHHHHHHHHHHCSCEEE
T ss_pred ccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcC---c--chhhhccHHHHHHHHHHhhcccccccee
Confidence 346899999999999888877753 345799999999999842 1 2345578999999999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcC-CCEEEEecc----------CCC-------CcCCCCccc----cHHHHHHHHhhC-CC
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGR----------TRD-------EKDGKKFRA----DWNAIKAVKNAL-RI 138 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G-~~~I~vh~r----------t~~-------~~~~~~~~~----~~~~i~~i~~~~-~i 138 (287)
|+....+..+....+..+.+.+ ++.+..... +.. +..+.+|++ .+..+..+++.+ +.
T Consensus 164 Kl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~ 243 (312)
T d2b4ga1 164 KMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDK 243 (312)
T ss_dssp EECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTS
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCC
Confidence 9987655544445555555544 444433110 000 001122222 356777777765 57
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhh-hCccchhchh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFR 181 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l-~nP~lf~~~~ 181 (287)
||+++|||.|++|+.+++. .||+.|+++++++ .+|.++.++.
T Consensus 244 ~Iig~GGI~s~~Da~e~i~-aGAs~Vqv~Tal~~~Gp~~i~~i~ 286 (312)
T d2b4ga1 244 LVFGCGGVYSGEEAFLHIL-AGASMVQVGTALHDEGPIIFARLN 286 (312)
T ss_dssp EEEEESSCCSHHHHHHHHH-HTEEEEEESHHHHHHCTTHHHHHH
T ss_pred ceeecCCcCCHHHHHHHHH-cCCChheeehhhHhcCcHHHHHHH
Confidence 8999999999999999998 5999999999985 6799998774
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.63 E-value=3.9e-15 Score=138.10 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=124.4
Q ss_pred CCEEEEecCCC----H-HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--------
Q 023070 9 RPLFVQFCAND----P-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-------- 75 (287)
Q Consensus 9 ~p~~~Qi~g~~----~-~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-------- 75 (287)
.++.+.+..+. . +++..+.+....++|+++||++||+.. |..-+.+++.+.++++++++..
T Consensus 149 ~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~------glr~~~~~~~L~~ll~~v~~~~~~~~~~~~ 222 (409)
T d1tv5a1 149 HIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNNI 222 (409)
T ss_dssp CEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc------ccccccCHHHHHHHHHHHHHHHHhhhcccc
Confidence 34556655432 2 444445555667899999999999952 3333468888899988886532
Q ss_pred -------------------------------------------CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc
Q 023070 76 -------------------------------------------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 112 (287)
Q Consensus 76 -------------------------------------------~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r 112 (287)
..||.+|+....+.++..++++.+.+.|++++++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt 302 (409)
T d1tv5a1 223 MNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNT 302 (409)
T ss_dssp ----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCchhhHHHHHHHHhccccceecccc
Confidence 2389999988777778899999999999999999765
Q ss_pred CCCCc---------CCCCcc----ccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccc
Q 023070 113 TRDEK---------DGKKFR----ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPAL 176 (287)
Q Consensus 113 t~~~~---------~~~~~~----~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~l 176 (287)
+.... .+.+|+ .....++++++.+ ++|||++|||.|++|+.+++. .|||.|++++++ +..|.+
T Consensus 303 ~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~-AGAs~VQv~T~li~~Gp~~ 381 (409)
T d1tv5a1 303 TTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKS 381 (409)
T ss_dssp BSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGH
T ss_pred cccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH-cCCCHHhhhhHHHhcChHH
Confidence 43211 111122 2456788888877 499999999999999999999 599999999997 577999
Q ss_pred hhchh
Q 023070 177 FAGFR 181 (287)
Q Consensus 177 f~~~~ 181 (287)
+.++.
T Consensus 382 v~~I~ 386 (409)
T d1tv5a1 382 AVQIK 386 (409)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98774
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.33 E-value=2.5e-12 Score=108.34 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=64.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+..+.+.|+++|.++.+..... .......+|+.+.++++.+++||+++|||.|++|+.++++ .|||+||+|+++
T Consensus 130 ~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~-~GAdgV~iGsAi- 207 (222)
T d1y0ea_ 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD-LGVHCSVVGGAI- 207 (222)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH-
T ss_pred HHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEchhh-
Confidence 445667899999997754432211 1222245689999999999999999999999999999998 699999999965
Q ss_pred hCccchh
Q 023070 172 ENPALFA 178 (287)
Q Consensus 172 ~nP~lf~ 178 (287)
.+|+.+.
T Consensus 208 ~rp~~~~ 214 (222)
T d1y0ea_ 208 TRPKEIT 214 (222)
T ss_dssp HCHHHHH
T ss_pred cCHHHHH
Confidence 5888653
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.27 E-value=1.4e-11 Score=104.39 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+.++.+.++|+++|.++++...+.........+. +..+....++||+++|||+|++|+.++++ .|||+||+|+++.
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ipvia~GGI~t~~d~~~al~-~GAd~V~vGsAi~- 216 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVA-LIEALCKAGIAVIAEGKIHSPEEAKKIND-LGVAGIVVGGAIT- 216 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHH-HHHHHHHTTCCEEEESCCCSHHHHHHHHT-TCCSEEEECHHHH-
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHHH-HHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChhhc-
Confidence 34577788999999999888766543333344454 45556678999999999999999999998 6999999999764
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
+|.
T Consensus 217 ~p~ 219 (230)
T d1yxya1 217 RPK 219 (230)
T ss_dssp CHH
T ss_pred CHH
Confidence 665
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=99.19 E-value=4.9e-11 Score=106.28 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=115.9
Q ss_pred CCEEEEecCC--CHHH--------HHHHHHHHcCCCCEEEEecc---CChhhhhcCcccccccCChHHHHHHHHHHhhc-
Q 023070 9 RPLFVQFCAN--DPEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN- 74 (287)
Q Consensus 9 ~p~~~Qi~g~--~~~~--------~~~aA~~~~~g~d~IdiN~g---cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~- 74 (287)
..+=+|++|. +-++ +.+|.++++.|+|-|-||-. .|..... =+.+..+|.++.++++.....
T Consensus 94 ~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~~~e----~~~~~~n~~li~~i~~~fGsq~ 169 (323)
T d1jvna1 94 VFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYE----LGNRGDGTSPIETISKAYGAQA 169 (323)
T ss_dssp CCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH----TTSCCCSCSHHHHHHHHHCGGG
T ss_pred cceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHHHHH----HHhhcccchhHHHHHHHhCCce
Confidence 3445677774 3222 56777788999999999821 1111000 011235777888888887543
Q ss_pred cCCcEEEEec-------------------------------C-CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC
Q 023070 75 LNVPVSCKIR-------------------------------V-FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119 (287)
Q Consensus 75 ~~~pv~vKiR-------------------------------~-g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~ 119 (287)
+-+.+.+|-. . ||. ..+..++++.+++.|+..|.++...++++..
T Consensus 170 IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~ 249 (323)
T d1jvna1 170 VVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNS 249 (323)
T ss_dssp EEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCS
T ss_pred EEEEEEEEeccccccccccccccccccccCCCccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeeccccccc
Confidence 2222333211 0 221 1267899999999999999999999987765
Q ss_pred CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
..|++.++++++.+++|||++||+.+++|+.+++..++++||++|++++.+-.-+
T Consensus 250 ---G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si 304 (323)
T d1jvna1 250 ---GYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTV 304 (323)
T ss_dssp ---CCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCH
T ss_pred ---ccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCH
Confidence 4899999999999999999999999999999999888999999999998544433
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.13 E-value=1.7e-10 Score=98.75 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=107.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----- 85 (287)
+=+|++|. ...+.++.++++.|++-|-+| +.+.++|+++.++.+.....+ .|++..+-
T Consensus 75 ~pi~vGGG-Irs~~~~~~ll~~Ga~kVvi~--------------s~~~~~~~~~~~~~~~~g~~~--vv~~d~~~~~~~~ 137 (239)
T d1vzwa1 75 IKVELSGG-IRDDDTLAAALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKI--AVGLDVRGTTLRG 137 (239)
T ss_dssp SEEEEESS-CCSHHHHHHHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGE--EEEEEEETTEECC
T ss_pred cceEeecc-cccchhhhhhhccccccchhh--------------HHhhhccccchhhhccCCcee--eeeeccceeeecC
Confidence 34666553 344445556777888888886 566789999999999886553 33443332
Q ss_pred -CC--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH--HHhcC
Q 023070 86 -FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC--LEETG 160 (287)
Q Consensus 86 -g~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~--l~~~g 160 (287)
|| ...+..+..+.+.+.|+..|.++.-.++++.. .+|++.++.+.+..++||+++|||+|.+|+.++ +...|
T Consensus 138 ~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~---G~d~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g 214 (239)
T d1vzwa1 138 RGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQ---GPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAG 214 (239)
T ss_dssp SSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred ccceeeccccchhhhhhhhccccEEEEEeecccceec---CCcchhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCC
Confidence 23 22356678889999999999999888887655 388999999999999999999999999999887 55569
Q ss_pred ccEEEEehhhhhCccchh
Q 023070 161 CEGVLSAESLLENPALFA 178 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~ 178 (287)
++||.+|++++.+--=+.
T Consensus 215 ~~gvivg~al~~g~i~~~ 232 (239)
T d1vzwa1 215 VEGAIVGKALYAKAFTLE 232 (239)
T ss_dssp EEEEEECHHHHTTSSCHH
T ss_pred ccEeeEhHHHHCCCCCHH
Confidence 999999999987554333
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=5.5e-10 Score=96.30 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=112.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC----
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV---- 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~---- 85 (287)
+-+|++|. .....++-+.+..|++-|-|| +.+.++|+++.++.+...... -.-+.+|.+.
T Consensus 75 ~pi~vgGG-Irs~e~~~~ll~~Ga~kVii~--------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~ 139 (251)
T d1ka9f_ 75 IPLTVGGG-VRSLEDARKLLLSGADKVSVN--------------SAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPE 139 (251)
T ss_dssp SCEEEESS-CCSHHHHHHHHHHTCSEEEEC--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEE
T ss_pred cchheecc-ccCHHHHHHHHHcCCCEEEEC--------------chhhhCHHHHHHHHHhhcccccccccchhhcccceE
Confidence 34566553 233344444566788877775 667789999999999885432 2233344321
Q ss_pred ----CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 86 ----FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 86 ----g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+|.. .+..++++.+.+.|+..+.++.-.++++.. ..|++.++++.+..++|+|++||+.+.+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~---G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~- 215 (251)
T d1ka9f_ 140 VHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKE---GYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ- 215 (251)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-
T ss_pred EEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccC---CcchhHHHHHHhhcceeEEEecCCCCHHHHHHHHH-
Confidence 3432 267899999999999999999988887655 37899999999999999999999999999999998
Q ss_pred cCccEEEEehhhhhCccchhch
Q 023070 159 TGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.|+++|++|++++.+-.-..++
T Consensus 216 ~g~~gviig~al~~g~~~~~~~ 237 (251)
T d1ka9f_ 216 AGAEAALAASVFHFGEIPIPKL 237 (251)
T ss_dssp TTCSEEEESHHHHTTSSCHHHH
T ss_pred CCCCEEEEhHHHHcCCCCHHHH
Confidence 6999999999988665544443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=7.9e-10 Score=95.38 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=110.0
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------ 85 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~------ 85 (287)
+|++| ......++.+.+..|++-|-|| +.+.++|+++.++.+.+... +-..+.++..-
T Consensus 77 i~vgG-GIr~~e~i~~~l~~Ga~kviig--------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~ 141 (253)
T d1thfd_ 77 FTVGG-GIHDFETASELILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVF 141 (253)
T ss_dssp EEEES-SCCSHHHHHHHHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEE
T ss_pred ceeec-ccccchhhhhHHhcCCCEEEEC--------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCceeee
Confidence 56644 3345555566677888888775 67788999999999998543 22222222111
Q ss_pred --CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 --FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 --g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+|. ..+..++++.+.+.|+..|.++...++++.. ..|++.++.+++..++||+++||++|++|+.++++ .|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~---G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~-~g 217 (253)
T d1thfd_ 142 TYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS---GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AG 217 (253)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCS---CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-TT
T ss_pred eeecccccchhHHHHHHHHHhccCCEEEEEEecccCccC---CccccccccccccccceEEEecCCCCHHHHHHHHH-CC
Confidence 232 2357789999999999999999988887655 38999999999999999999999999999999987 69
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
+++|.+|++++.+--
T Consensus 218 ~~gvivgsal~~~~~ 232 (253)
T d1thfd_ 218 ADAALAASVFHFREI 232 (253)
T ss_dssp CSEEEESHHHHTTCS
T ss_pred CCEEEEchHHHcCCC
Confidence 999999999876543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.06 E-value=1.2e-09 Score=94.15 Aligned_cols=131 Identities=24% Similarity=0.295 Sum_probs=101.7
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC--------CCCh---hhHH
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV--------FPNL---QDTI 93 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~--------g~~~---~~~~ 93 (287)
+-+++..|++-|-+| +.+..+|+++.++.+..... +-+.+.+|..- +|.. -+..
T Consensus 91 ~~~ll~~G~~kVii~--------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~ 156 (252)
T d1h5ya_ 91 ATTLFRAGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAV 156 (252)
T ss_dssp HHHHHHHTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHH
T ss_pred hhhHhhcCCcEEEec--------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHH
Confidence 333455577777664 66778999999999988543 33444444331 3431 2567
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++++.+.+.|+..+.++...++++.. ..|++.++++++..++||+++|||.+.+|+.++.+ .|++||.+|++++.+
T Consensus 157 ~~~~~~~~~g~~eii~tdI~~dG~~~---G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~~-~g~~gv~~gs~l~~~ 232 (252)
T d1h5ya_ 157 KWAKEVEELGAGEILLTSIDRDGTGL---GYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFR 232 (252)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTTCS---CCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTT
T ss_pred HHHHHHHhcCCCEEEEEeecccCccC---CcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEhhHHHcC
Confidence 89999999999999999988887654 38999999999999999999999999999999876 699999999998754
Q ss_pred c
Q 023070 174 P 174 (287)
Q Consensus 174 P 174 (287)
-
T Consensus 233 ~ 233 (252)
T d1h5ya_ 233 V 233 (252)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.00 E-value=3.4e-09 Score=94.40 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=85.6
Q ss_pred CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-CCChhhHHHHHHHHHHcCCCEEEEe
Q 023070 32 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVH 110 (287)
Q Consensus 32 ~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-g~~~~~~~~~a~~l~~~G~~~I~vh 110 (287)
.+++++.+|..||.......+ ..+...+.+.++.+++..+.|+.+|.-. +.+ .+.++.+.++|+|+|.|.
T Consensus 119 ~g~~ai~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~----~~~a~~~~~~GaD~i~v~ 189 (329)
T d1p0ka_ 119 IGANALQIHLNVIQEIVMPEG-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEAGAAAVDIG 189 (329)
T ss_dssp TTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHHTCSEEEEE
T ss_pred cCCCEEEecccccchhhhccc-----cccccchHHHHHHHHHHcCCCcEEEecCCcch----HHHHHHHHhcCCCEEEEc
Confidence 488999999999986444332 1233445566778888888999998533 223 344566788999999995
Q ss_pred c---cCCCCc-----------CCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 111 G---RTRDEK-----------DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 111 ~---rt~~~~-----------~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+ |+.... ....+.+....+..+.... ++|||+.|||++..|+.++|. .|||+||+||+++
T Consensus 190 ~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAla-lGAdaV~iGr~~l 264 (329)
T d1p0ka_ 190 GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIA-LGASCTGMAGHFL 264 (329)
T ss_dssp C---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred CCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHHH-cCCCchhccHHHH
Confidence 3 221100 0011123344455555443 799999999999999999998 6999999999765
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=1.4e-09 Score=93.08 Aligned_cols=142 Identities=17% Similarity=0.139 Sum_probs=103.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g 86 (287)
+|++|.- .....+-++++.|+|.|-+| +.+.++|.++..+.+ .... +.+++..+- +
T Consensus 76 l~~gGGI-~s~~~~~~~~~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~~--~~v~iD~~~~~~~~~g 137 (241)
T d1qo2a_ 76 IQIGGGI-RSLDYAEKLRKLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDVE--PVFSLDTRGGRVAFKG 137 (241)
T ss_dssp EEEESSC-CSHHHHHHHHHTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTCE--EEEEEEEETTEECCTT
T ss_pred hhhhhhh-hhhhhhhhccccccceEecC--------------cccccCchhhhhhcc-cccc--eeeecccccccccccC
Confidence 5776642 34445556778899999886 455667776655433 2222 334443332 3
Q ss_pred CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-----
Q 023070 87 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE----- 158 (287)
Q Consensus 87 ~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~----- 158 (287)
|. ..+..++++.+++.|+..|.++...++++.. ..|++.++.+.+.+++||+++|||.+.+|+.++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~---G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~ 214 (241)
T d1qo2a_ 138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETN 214 (241)
T ss_dssp CSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTC---CCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTT
T ss_pred cccceeeehhHHHHHhhccccceEEEeehhhhhhcc---ccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHcccccc
Confidence 32 2367889999999999999999888876655 379999999998899999999999999999998762
Q ss_pred cCccEEEEehhhhhCcc
Q 023070 159 TGCEGVLSAESLLENPA 175 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~ 175 (287)
.+++||.+|++++.+--
T Consensus 215 ~~~~gvivG~al~~g~l 231 (241)
T d1qo2a_ 215 GLLKGVIVGRAFLEGIL 231 (241)
T ss_dssp TSEEEEEECHHHHTTSS
T ss_pred CCEeeEEEHHHHHCCCC
Confidence 46999999999975543
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=2e-08 Score=88.13 Aligned_cols=154 Identities=22% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCCCEEEEecCCCHHHHH--HHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILL--NAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~--~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
.+.++.+|+....+..+. ...+..+. +++++.+|..||......+. .......+....+ ...+.|+.+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~p~~~k~ 166 (310)
T d1vcfa1 94 PKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD------TDFRGLVERLAEL-LPLPFPVMVKE 166 (310)
T ss_dssp SSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC------CCCTTHHHHHHHH-CSCSSCEEEEC
T ss_pred CCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc------cccccHHHHHHHH-hhccCCceeee
Confidence 356788888775443331 22223332 67889999998875444332 1111223333332 34579999996
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cC---------CCCccccHHHHHHHHhhC-CCcEEEecCC
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KD---------GKKFRADWNAIKAVKNAL-RIPVLANGNV 146 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~---------~~~~~~~~~~i~~i~~~~-~ipVi~nGgI 146 (287)
-.+.. ..+.++.+.++|++.|.|.++...+ .. ...+.+..+.+..+++.. ++|||+.|||
T Consensus 167 v~~~~---~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGI 243 (310)
T d1vcfa1 167 VGHGL---SREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGV 243 (310)
T ss_dssp SSSCC---CHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSC
T ss_pred ecCcc---cHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCC
Confidence 43221 2456778889999999985432110 00 011122344555555543 7999999999
Q ss_pred CCHHHHHHHHHhcCccEEEEehhhh
Q 023070 147 RHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++..|+.++|. .|||+||+||+++
T Consensus 244 r~g~Dv~KALa-lGAdaV~iGr~~l 267 (310)
T d1vcfa1 244 YTGTDGAKALA-LGADLLAVARPLL 267 (310)
T ss_dssp CSHHHHHHHHH-HTCSEEEECGGGH
T ss_pred CchHHHHHHHH-hCCCEeeEhHHHH
Confidence 99999999998 6999999999876
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=4.7e-08 Score=87.77 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=99.0
Q ss_pred CCCEEEEecCCCHH-HHHHHHHHHc-CCCCEEEEeccCChh-hhhc---Cccc----------------------ccccC
Q 023070 8 DRPLFVQFCANDPE-ILLNAARRVE-PYCDYVDINLGCPQR-IARR---GNYG----------------------AFLMD 59 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~-~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~---~~~G----------------------~~l~~ 59 (287)
+.+...|+.-.... ...+..+.++ .|+..+-+....|.. +..+ .++. ..-..
T Consensus 121 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T d1tb3a1 121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFP 200 (349)
T ss_dssp TCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC------------
T ss_pred CCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhcccccccccccc
Confidence 46788899775443 3334444443 488777776554441 1100 0000 00001
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
++.+..+-+..+++..+.|+.+|--. + .+-+..+.++|++.+.|.+....+. ...+.-.+.+.++++.+ +
T Consensus 201 ~~~~~~~~i~~l~~~~~~pii~Kgi~--~----~~da~~a~~~G~d~i~vsnhggr~~--d~~~~~~~~l~~i~~~~~~~ 272 (349)
T d1tb3a1 201 KASFCWNDLSLLQSITRLPIILKGIL--T----KEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGK 272 (349)
T ss_dssp -CCCCHHHHHHHHTTCCSCEEEEEEC--S----HHHHHHHHHTTCSEEEECCGGGTSS--CSBCCHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHhcCCCcccchhh--h----hHHHHHHHHhhccceeeeccccccc--cccccchhhcceeeeccCCC
Confidence 12222356777888889999999432 1 2346677899999999953322221 12245566777777764 6
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+|||+.|||++..|+.++|. .|||+|+|||+++.
T Consensus 273 ~~iiadGGIR~G~Dv~KALA-LGA~~V~igrp~L~ 306 (349)
T d1tb3a1 273 IEVYMDGGVRTGTDVLKALA-LGARCIFLGRPILW 306 (349)
T ss_dssp SEEEEESSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred eeEEeccCcCcHHHHHHHHH-cCCCEEEEChHHHH
Confidence 99999999999999999999 69999999999873
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=98.65 E-value=1.9e-07 Score=83.02 Aligned_cols=143 Identities=18% Similarity=0.214 Sum_probs=95.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
+.+.+ |-+|+.+.++..++++|+|.|-|-.. -..+..+.+.++.+++.. ++||.+.-
T Consensus 89 v~~~v-gv~~~~~e~~~~li~agvd~ivId~A---------------~G~~~~~~~~ik~ik~~~~~~~viaGn------ 146 (330)
T d1vrda1 89 VGAAV-GTSPETMERVEKLVKAGVDVIVIDTA---------------HGHSRRVIETLEMIKADYPDLPVVAGN------ 146 (330)
T ss_dssp CEEEE-CSSTTHHHHHHHHHHTTCSEEEECCS---------------CCSSHHHHHHHHHHHHHCTTSCEEEEE------
T ss_pred EEEEE-ecCHHHHHHHHHHHHCCCCEEEEecC---------------CCCchhHHHHHHHHHHhCCCCCEEeec------
Confidence 44444 45567777776677888887655321 124566677778777654 68888762
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCC---c--CCCCccccHHHHH---HHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDE---K--DGKKFRADWNAIK---AVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~---~--~~~~~~~~~~~i~---~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
--+.+.++.+.++|+|.|.|- ..... . ....+.+++..+. .+++..++|||+.|||.+..|+.++|. .||
T Consensus 147 V~t~~~a~~l~~~GaD~v~VG-ig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAla-~GA 224 (330)
T d1vrda1 147 VATPEGTEALIKAGADAVKVG-VGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALA-AGA 224 (330)
T ss_dssp ECSHHHHHHHHHTTCSEEEEC-SSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH-TTC
T ss_pred hhHHHHHHHHHHcCCCEEeec-cccCccccccceeccccccchhHHHHHHHHHhcCceEEecCCcccCCchheeee-ccC
Confidence 123456788889999999882 21110 0 0111234444444 445567899999999999999999998 699
Q ss_pred cEEEEehhhhhCccch
Q 023070 162 EGVLSAESLLENPALF 177 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf 177 (287)
|+||+|+-|..-..-.
T Consensus 225 d~Vm~Gs~fa~~~E~p 240 (330)
T d1vrda1 225 ESVMVGSIFAGTEEAP 240 (330)
T ss_dssp SEEEESHHHHTBTTSS
T ss_pred ceeeecchheeecccC
Confidence 9999999987655433
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.57 E-value=3.6e-07 Score=77.91 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=97.4
Q ss_pred EEEEecCC--CHHHHHHHHHHHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcEEE
Q 023070 11 LFVQFCAN--DPEILLNAARRVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 11 ~~~Qi~g~--~~~~~~~aA~~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
++.=+... +.+...++++.+..|+|.|||- |.-|. +..++. .--+|. -+.+.+.++++.+++..++|+.+
T Consensus 7 li~y~taG~P~~~~s~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A-~~rAl~~G~~~~~~~~~~~~~r~~~~~pivl 85 (248)
T d1geqa_ 7 LIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIADGKTIQES-HYRALKNGFKLREAFWIVKEFRRHSSTPIVL 85 (248)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHH-HHHHHHTTCCHHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEEcCcCCCHHHHHHHHHHHHcCCCEEEECCCCCCccccCHHHHHh-hhHHHhCCccHHHHHHHHHHHhhcCCCcEEE
Confidence 44444454 4578888888777799999996 34444 112111 111221 26788899999999888888764
Q ss_pred EecCCCCh---hhHHHHHHHHHHcCCCEEEE-------------------------ecc-CCCC----------------
Q 023070 82 KIRVFPNL---QDTIKYAKMLEDAGCSLLAV-------------------------HGR-TRDE---------------- 116 (287)
Q Consensus 82 KiR~g~~~---~~~~~~a~~l~~~G~~~I~v-------------------------h~r-t~~~---------------- 116 (287)
=.-. +. ....+|++.+.++|++.+++ -.- |...
T Consensus 86 m~Y~--N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~v 163 (248)
T d1geqa_ 86 MTYY--NPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLV 163 (248)
T ss_dssp EECH--HHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred Eecc--ccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEE
Confidence 3211 00 01234445555555555544 211 1100
Q ss_pred -cCCCCc-----c-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 -KDGKKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 -~~~~~~-----~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+| + .--+.++++++.+++||++.-||+|++++.++++ .+||||.+|++++
T Consensus 164 s~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~-~~ADGvIVGSaiv 224 (248)
T d1geqa_ 164 SLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLK-EGANGVVVGSALV 224 (248)
T ss_dssp CCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred ecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 011111 1 1146788999999999999999999999999998 4899999999986
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.56 E-value=7.3e-07 Score=76.87 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=98.9
Q ss_pred EEEEecCC--CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhcc-CCcE
Q 023070 11 LFVQFCAN--DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNL-NVPV 79 (287)
Q Consensus 11 ~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~-~~pv 79 (287)
+|.=+.+. |.+...++++. .+.|+|.|||- |.-|. +..++.. --+|. -+++.+.++++.+++.. ++|+
T Consensus 19 li~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~-~~al~~G~~~~~~~~~~~~~r~~~~~~pi 97 (267)
T d1qopa_ 19 FVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNAN-LRAFAAGVTPAQCFEMLAIIREKHPTIPI 97 (267)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCSSSCE
T ss_pred EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhh-hhcccccchhhhhhhhhhhhcccccccce
Confidence 55555554 45677788875 46799999997 45555 1121110 11222 35777889999888764 6787
Q ss_pred EEEecCCCCh-hhHHHHHHHHHHcCCCEEEEec-------------------------c-CCC-----------C-----
Q 023070 80 SCKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHG-------------------------R-TRD-----------E----- 116 (287)
Q Consensus 80 ~vKiR~g~~~-~~~~~~a~~l~~~G~~~I~vh~-------------------------r-t~~-----------~----- 116 (287)
.+=.-...-. --..+|++.+.++|+++++|-. - |.. +
T Consensus 98 vlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v 177 (267)
T d1qopa_ 98 GLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLL 177 (267)
T ss_dssp EEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEE
T ss_pred EEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhh
Confidence 6532110000 0123556666666666666621 1 110 0
Q ss_pred -cCCCCc-----cc-cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 117 -KDGKKF-----RA-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 117 -~~~~~~-----~~-~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+-+| .. --+.++++++.+++||++.-||+|++++.+.++ .+||||+||++++.
T Consensus 178 s~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~-~~ADGvIVGSAivk 239 (267)
T d1qopa_ 178 SRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVR-AGAAGAISGSAIVK 239 (267)
T ss_dssp SSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred cccccCCcccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 011111 11 247789999999999999999999999999898 59999999999874
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.56 E-value=6.7e-07 Score=76.83 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=107.1
Q ss_pred EEEEecCC--CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcEE
Q 023070 11 LFVQFCAN--DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 11 ~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
++.=+... +.+.+.++++. .+.|+|.|||- |..|. +..++. .--+|. -+.+.+.++++.+++...+|+.
T Consensus 19 li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a-~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i 97 (261)
T d1rd5a_ 19 FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQAS-VARALASGTTMDAVLEMLREVTPELSCPVV 97 (261)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHH-HHHHHTTTCCHHHHHHHHHHHGGGCSSCEE
T ss_pred EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeee-eeeccccCcchhhhhhhhhcccccccCcee
Confidence 45444444 66888899885 45699999998 67776 222221 111222 3577889999999988888876
Q ss_pred EEecC--------------C--------CChhhHHHHHHHHHHcCCCEEEEecc-CCCC-----------------cCCC
Q 023070 81 CKIRV--------------F--------PNLQDTIKYAKMLEDAGCSLLAVHGR-TRDE-----------------KDGK 120 (287)
Q Consensus 81 vKiR~--------------g--------~~~~~~~~~a~~l~~~G~~~I~vh~r-t~~~-----------------~~~~ 120 (287)
+=.-. | ...++..++.+.+.+.|.+.|.+-.- |... ..+-
T Consensus 98 lm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~Gv 177 (261)
T d1rd5a_ 98 LLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGV 177 (261)
T ss_dssp EECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCC
T ss_pred eeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCc
Confidence 43211 1 12456667777778888877755321 1110 0011
Q ss_pred Cc-----ccc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 121 KF-----RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 121 ~~-----~~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+| ..+ -+.++++++..++||++.-||++++|+.++.+ .|||||.||.+++.
T Consensus 178 TG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~-~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 178 TGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQ-WGADGVIIGSAMVR 234 (261)
T ss_dssp BCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred ccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 11 112 36788999999999999999999999999987 58999999999863
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.49 E-value=6.6e-07 Score=80.87 Aligned_cols=142 Identities=18% Similarity=0.102 Sum_probs=93.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
+.+-+ |-.+++...+...+++|+|.|-+...-+ ....+.+.++.+++.. ++||.+--
T Consensus 110 v~aav-g~~~~~~~~~~~l~~agv~vi~id~a~g---------------~~~~~~~~i~~ik~~~~~~~iIaGn------ 167 (378)
T d1jr1a1 110 CGAAI-GTHEDDKYRLDLLALAGVDVVVLDSSQG---------------NSIFQINMIKYMKEKYPNLQVIGGN------ 167 (378)
T ss_dssp CEEEE-CSSTHHHHHHHHHHHHTCCEEEECCSSC---------------CSHHHHHHHHHHHHHSTTCEEEEEE------
T ss_pred EEEEe-ccCHHHHHHHHHHHhhccceEeeeccCc---------------cchhhHHHHHHHHHHCCCCceeecc------
Confidence 34444 3345555555556677889888874321 3455667777777654 67776551
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCccccHHHHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~~~~~~i~~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
--+.+-++.|.++|+|.|.|-......- ....+.+.+..+.. +++..++|||+.|||.+..|+.++|. .|||
T Consensus 168 VaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla-~GAd 246 (378)
T d1jr1a1 168 VVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALA-LGAS 246 (378)
T ss_dssp ECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCS
T ss_pred cccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEE-eecc
Confidence 1234557788899999998853322110 00112344554444 44556899999999999999999998 6999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+|+.|..-..
T Consensus 247 ~VMmGs~fAgt~E 259 (378)
T d1jr1a1 247 TVMMGSLLAATTE 259 (378)
T ss_dssp EEEESTTTTTBTT
T ss_pred eeeecceeeeeec
Confidence 9999998875443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=1.6e-07 Score=80.54 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
..++.++|+.+.+.|++.+++-.-.... .....+++.+.++.+.+.+|+.+.|||++.+++++++. .|||-|.+|+
T Consensus 29 ~gdP~~~a~~~~~~g~dei~ivDld~~~---~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~-~Ga~kviigs 104 (253)
T d1thfd_ 29 SGDPVELGKFYSEIGIDELVFLDITASV---EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINT 104 (253)
T ss_dssp TTCHHHHHHHHHHTTCCEEEEEESSCSS---SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecccc---cCcccHHHHHHHHHhccCccceeecccccchhhhhHHh-cCCCEEEECh
Confidence 3478899999999999999986543321 11246788999999999999999999999999999998 5999999999
Q ss_pred hhhhCccchhchhh
Q 023070 169 SLLENPALFAGFRT 182 (287)
Q Consensus 169 ~~l~nP~lf~~~~~ 182 (287)
.++.||.++.++..
T Consensus 105 ~~~~n~~~l~~~~~ 118 (253)
T d1thfd_ 105 AAVENPSLITQIAQ 118 (253)
T ss_dssp HHHHCTHHHHHHHH
T ss_pred HHhhChHHHHHHHH
Confidence 99999999888753
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.48 E-value=8.4e-07 Score=76.91 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=108.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhh--------hhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRI--------ARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF 86 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~--------~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g 86 (287)
.+|+++++.|+ .++.||+++-++.+.+-.. ..+...|-...++++.-.+.|+++|+.+ ++.+.+....+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 58999999888 5678999999986654321 1111111222345666778888898887 57888888889
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+.++++++++.+++.++.++ ++.- .+.+++..+++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 105 ~~~~~Ai~~~~~L~~~~l~wi-------EePi---~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 174 (278)
T d2gl5a1 105 LGTNSAIQFAKAIEKYRIFLY-------EEPI---HPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQP 174 (278)
T ss_dssp SCHHHHHHHHHHHGGGCEEEE-------ECSS---CSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred ccchhhHHHHHHhccccccee-------cccc---cccchhhhhhhccccccceecccccCChHHHhhhhccccceeEee
Confidence 999999999999999988766 1111 135788899999999999999889999999999999888888877
Q ss_pred eh
Q 023070 167 AE 168 (287)
Q Consensus 167 GR 168 (287)
--
T Consensus 175 d~ 176 (278)
T d2gl5a1 175 DL 176 (278)
T ss_dssp CT
T ss_pred cc
Confidence 53
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.48 E-value=3e-07 Score=83.56 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|..++...++..++++|+|.|=|-.. . -..+.+.++++.+++.. ++||.+.- --+.+-
T Consensus 147 g~~~~~~~ra~~L~~aG~D~ivID~A--------h-------G~s~~~~~~i~~ik~~~~~v~vIaGN------V~T~e~ 205 (388)
T d1eepa_ 147 SIDIDTIERVEELVKAHVDILVIDSA--------H-------GHSTRIIELIKKIKTKYPNLDLIAGN------IVTKEA 205 (388)
T ss_dssp CSCTTHHHHHHHHHHTTCSEEEECCS--------C-------CSSHHHHHHHHHHHHHCTTCEEEEEE------ECSHHH
T ss_pred CCCHHHHHHHHHHHhhccceeeeecc--------c-------cchHHHHHHHHHHHHHCCCCceeecc------ccCHHH
Confidence 44556677777788899998766421 1 13456678888887654 78887762 223456
Q ss_pred HHHHHHcCCCEEEEecc------CCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.|.++|+|+|.|--. |+... .-+.+.+..+..+.+ ...+|||+.|||++.-|+.++|. .|||+||+
T Consensus 206 a~~L~~~GaD~VkVGiGpGs~CtTr~~~--GvG~pq~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla-~GAd~VMl 282 (388)
T d1eepa_ 206 ALDLISVGADCLKVGIGPGSICTTRIVA--GVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIA-AGADSVMI 282 (388)
T ss_dssp HHHHHTTTCSEEEECSSCSTTSHHHHHH--CCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHH-HTCSEEEE
T ss_pred HHHHHhcCCCeeeecccccccccccccc--ccCcchHHHHHHHHHHhccCCceEEeccccCcCCceeeeEE-eccceeec
Confidence 77788999999988422 11111 112345555555443 45799999999999999999998 69999999
Q ss_pred ehhhhhC
Q 023070 167 AESLLEN 173 (287)
Q Consensus 167 GR~~l~n 173 (287)
|+.+-.-
T Consensus 283 G~~lAg~ 289 (388)
T d1eepa_ 283 GNLFAGT 289 (388)
T ss_dssp CHHHHTB
T ss_pred chhhhcc
Confidence 9987643
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=98.47 E-value=2.4e-06 Score=72.38 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=110.9
Q ss_pred CCCCEEEEecCCC-HHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 7 EDRPLFVQFCAND-PEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
+..|+...+...+ +++++++++.+. .||..+.+.+|- .+++.-.+.++++++.+ ++.+.+.
T Consensus 4 ~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---------------~~~~~D~~~v~~ir~~~g~~~~l~vD 68 (244)
T d2chra1 4 SAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVD 68 (244)
T ss_dssp SEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEE
T ss_pred CcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCC---------------CCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 3457777776654 566777878665 599999998651 13444456677887776 5788888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
..-+|+.++++++++.+++.++.++ ++.- .+.|++.++++++.+++||.+.-.+.+++++.++++...+|
T Consensus 69 aN~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d 138 (244)
T d2chra1 69 VNQAWDEQVASVYIPELEALGVELI-------EQPV---GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVD 138 (244)
T ss_dssp CTTCCCTHHHHHHHHHHHTTTCCEE-------ECCS---CSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCS
T ss_pred CCCCcchHHHHHHHHHHhhhhHHHH-------hhhh---hhccchhhhhhccceeeeeeecccccccchhhhhhhcceeE
Confidence 8889999999999999999998765 2111 13578999999999999999999999999999999987899
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
.|++.-.-++...
T Consensus 139 ~v~~d~~~~GGit 151 (244)
T d2chra1 139 VFSLKLCNMGGVS 151 (244)
T ss_dssp EECCCHHHHTSHH
T ss_pred EEeeccccccchH
Confidence 9998655554444
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.46 E-value=1.7e-07 Score=83.03 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHH-----------HHHHHHh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED-----------VQKCLEE 158 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d-----------a~~~l~~ 158 (287)
.++++.|+.+.+.|+|.|++-.-.........-..+++.++++.+.+.+||.+.|||+|.+| |.++++
T Consensus 48 GdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~- 126 (323)
T d1jvna1 48 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR- 126 (323)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHH-
Confidence 48899999999999999988544332111111135689999999999999999999999654 678888
Q ss_pred cCccEEEEehhhhhCccchhch
Q 023070 159 TGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.|||-|.||++++.||.++.++
T Consensus 127 ~GadKVvI~T~ai~~p~~~~e~ 148 (323)
T d1jvna1 127 SGADKVSIGTDAVYAAEKYYEL 148 (323)
T ss_dssp HTCSEEEECHHHHHHHHHHHHT
T ss_pred cCCCeEEechHHhhChHHHHHH
Confidence 5999999999999888766543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.44 E-value=2.5e-07 Score=79.31 Aligned_cols=89 Identities=27% Similarity=0.387 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.+++..-..... ....+++.++++.+.+.+|+.+.|||++.+++++++. .|||-|.+|+.
T Consensus 32 ~dP~~~a~~~~~~gadei~ivDl~~~~~---~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~-~G~~kVii~s~ 107 (252)
T d1h5ya_ 32 GDPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTA 107 (252)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc---ccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhh-cCCcEEEeccc
Confidence 3678999999999999998876554421 1146788999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 108 ~~~~~~~~~~~~~ 120 (252)
T d1h5ya_ 108 AVRNPQLVALLAR 120 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred ccCCcchHHHHHH
Confidence 9999999988753
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.42 E-value=9.5e-07 Score=78.80 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
...+-++.+++..+.|+.+|--. + .+-+..+.+.|++.+.+......+ ....+..++.+.++....++|||+
T Consensus 209 ~~~~~i~~l~~~~~~~i~~kgv~--~----~~~~~~a~~~g~~~~~~s~~gg~~--~~~~~~~~~~l~~i~~~~~~~via 280 (353)
T d1p4ca_ 209 FNWEALRWLRDLWPHKLLVKGLL--S----AEDADRCIAEGADGVILSNHGGRQ--LDCAISPMEVLAQSVAKTGKPVLI 280 (353)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEEC--C----HHHHHHHHHTTCSEEEECCGGGTS--CTTCCCGGGTHHHHHHHHCSCEEE
T ss_pred CCHHHHHHHHhccccchhhhcch--h----hhhHHHHHhcCCchhhhccccccc--ccccccchhcccchhcccccceee
Confidence 44566777777788899988322 2 234566778999999884221111 111234556667777777899999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+|||++.-|+.++|. .|||+|++||+++.
T Consensus 281 sGGIR~G~Dv~KALa-LGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 281 DSGFRRGSDIVKALA-LGAEAVLLGRATLY 309 (353)
T ss_dssp CSSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred cCCcCchHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999999 69999999998874
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=3.1e-07 Score=78.61 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+++++|+.+.+.|++.+++..-..... ....+++.++.+.+.+.+|+.+.|||+|.++++++++ .||+-|.+|+.
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~~~---~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~-~Ga~kVii~s~ 105 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSA 105 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEecccccc---cchhHHHHHHHHHhccCcchheeccccCHHHHHHHHH-cCCCEEEECch
Confidence 4788999999999999999875443321 1146788999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 106 ~~~n~~~i~~~~~ 118 (251)
T d1ka9f_ 106 AVRRPELIRELAD 118 (251)
T ss_dssp HHHCTHHHHHHHH
T ss_pred hhhCHHHHHHHHH
Confidence 9999999987653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=2.9e-06 Score=77.51 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=95.2
Q ss_pred CCCEEEEecCCC-HHHHHHHHHHHc-CCCCEEEEeccCChhhhh-------------------------cCcccccc--c
Q 023070 8 DRPLFVQFCAND-PEILLNAARRVE-PYCDYVDINLGCPQRIAR-------------------------RGNYGAFL--M 58 (287)
Q Consensus 8 ~~p~~~Qi~g~~-~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~-------------------------~~~~G~~l--~ 58 (287)
..+...|+.-+. .+......+.++ .|++++-++...|..-.+ ..+.+..+ .
T Consensus 149 ~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 228 (414)
T d1kbia1 149 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 228 (414)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred ccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHh
Confidence 345778887754 444444455554 488877777555531000 00011111 1
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh----
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---- 134 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---- 134 (287)
-++.+..+.++.++...+.|+.+|--. . .+-+..+.+.|++.+.+......+.... ......+..+.+
T Consensus 229 ~~~~l~~~~i~~i~~~~~~~~i~kgi~--~----~~da~~~~~~G~~~i~vsnhggr~~d~~--~~~~~~l~~i~~~~~~ 300 (414)
T d1kbia1 229 IDPSLTWKDIEELKKKTKLPIVIKGVQ--R----TEDVIKAAEIGVSGVVLSNHGGRQLDFS--RAPIEVLAETMPILEQ 300 (414)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEEEEC--S----HHHHHHHHHTTCSEEEECCTTTTSSTTC--CCHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHhccCCceEEeeccc--h----hHHHHHHHhcCCcceeeccccccccccc--cccccchhhhhhhhhh
Confidence 122334466778888888999999422 2 3345667799999999954332222111 222222333322
Q ss_pred -h--CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 135 -A--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 135 -~--~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
. .++|||++|||++.-|+.++|. .|||+|+|||+++.
T Consensus 301 ~~v~~~~~viadGGIR~G~DVaKALA-LGAdaVgigrp~L~ 340 (414)
T d1kbia1 301 RNLKDKLEVFVDGGVRRGTDVLKALC-LGAKGVGLGRPFLY 340 (414)
T ss_dssp TTCBTTBEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred hccCCceeEEecCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 1 2599999999999999999999 59999999999874
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=98.35 E-value=4.9e-06 Score=69.64 Aligned_cols=130 Identities=17% Similarity=0.231 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHHH
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLE 100 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l~ 100 (287)
..++...++.|+|.||+=+ ++|.....+.+.+.+-++++++.+ +.++-|-+-.+ .+.++....++.+.
T Consensus 73 ~~E~~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~ 142 (225)
T d1mzha_ 73 VKEAVEAVRDGAQELDIVW----------NLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICI 142 (225)
T ss_dssp HHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEee----------chhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHH
Confidence 3445557788999999864 134444457788888888887766 44443433333 35567788889999
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
++|+|+|--+.... ++.+..+.++.+++.+ ++.|=++|||+|.+++.++++ .|++-+....+
T Consensus 143 ~aGadfiKTSTG~~------~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~-~Ga~RiGtSs~ 206 (225)
T d1mzha_ 143 EAGADFIKTSTGFA------PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE-AGADRIGTSSG 206 (225)
T ss_dssp HHTCSEEECCCSCS------SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSEEEESCH
T ss_pred HcccceEeecCCCC------CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHH-hchhheecCcH
Confidence 99999995542211 1235556677666654 588999999999999999998 59997665544
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=98.35 E-value=7e-06 Score=69.29 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=106.1
Q ss_pred CCCCEEEEecCCCHHHH-HHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 7 EDRPLFVQFCANDPEIL-LNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~-~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
+..|+...++..+++.. .++.+.++ .||..+-|.+|- .+++.-.+.++++++.+ ++.+.+.
T Consensus 4 d~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~i~~ir~~~g~~~~l~vD 68 (242)
T d1muca1 4 DSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGA---------------NPVEQDLKHVVTIKRELGDSASVRVD 68 (242)
T ss_dssp SEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECC---------------CCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45688888887777666 56666665 599999998761 13344445566666655 5788888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
..-+|+.++++++++.+++.|+.+| ++.- .+.|++.++++++.+++||.+...+.++.++..+++...+|
T Consensus 69 aN~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d 138 (242)
T d1muca1 69 VNQYWDESQAIRACQVLGDNGIDLI-------EQPI---SRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAAS 138 (242)
T ss_dssp CTTCBCHHHHHHHHHHHHHTTCCCE-------ECCB---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCS
T ss_pred cCCCCcHHHHHHHHHHhhhhhHHHh-------hcch---hhhhhhhhhhhhhhhhheeecccccccccchhhhhhccccc
Confidence 8889999999999999999998876 2211 13578899999999999999999999999999999987799
Q ss_pred EEEEe
Q 023070 163 GVLSA 167 (287)
Q Consensus 163 ~VmiG 167 (287)
.+++-
T Consensus 139 ~~~~d 143 (242)
T d1muca1 139 IFALK 143 (242)
T ss_dssp EEEEC
T ss_pred ccccc
Confidence 99884
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.35 E-value=7.8e-06 Score=69.40 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=106.6
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
++|+++++.|+ .++.||..+.+..|.|... ++ .+++.-.+.++++|+.+ ++.+.+...-+|+..++++
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----~~----~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 92 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----WA----PDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 92 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----TC----CCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----cc----cCHHHHHHHHHHHHHHcCCccceecccccccccchhhh
Confidence 47999999887 5567999999998765421 11 35667777888888876 5778888888999999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHH-HHHHHHHhcCccEEEEehhhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~-da~~~l~~~gad~VmiGR~~l~ 172 (287)
+++.+++.++.++- +.- .+.|++.++++++.+++||.+...+.+.. +...+++...+|.+++--+.++
T Consensus 93 ~~~~l~~~~l~~iE-------eP~---~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~G 161 (255)
T d1rvka1 93 LGRGLEKLGFDWIE-------EPM---DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG 161 (255)
T ss_dssp HHHHHHTTTCSEEE-------CCS---CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred hhhhcccchhhhhc-------CCc---ccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhchhhhccccccccc
Confidence 99999999998772 111 13578889999999999999999998875 6678888888999988654444
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.31 E-value=1.2e-05 Score=68.10 Aligned_cols=136 Identities=13% Similarity=0.229 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------ 85 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------ 85 (287)
.||.+++ +..+.|+++|.+.. -...|||++ +-+..+++.+++||-.|==+
T Consensus 63 ~d~~~~a---~~~~~gA~aiSVLT-------d~~~F~Gs~--------~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~ 124 (247)
T d1a53a_ 63 RDPIEYS---KFMERYAVGLSILT-------EEKYFNGSY--------ETLRKIASSVSIPILMKDFIVKESQIDDAYNL 124 (247)
T ss_dssp CCHHHHH---HHHTTTCSEEEEEC-------CCTTTCCCH--------HHHHHHHHHCCSCEEEESCCCSHHHHHHHHHH
T ss_pred cCHHHHH---HHHHhCCCeEEEec-------Cccccccch--------HHHHHHHhccccceeecccccChHHHHHHHHh
Confidence 4565543 55677899999872 223355543 33455566678999888311
Q ss_pred C----------CChhhHHHHHHHHHHcC--------------------CCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 86 F----------PNLQDTIKYAKMLEDAG--------------------CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 86 g----------~~~~~~~~~a~~l~~~G--------------------~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
| .+.++..++.+.+.+.| ++.|-|..|... +...|.+...++...
T Consensus 125 GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL~-----t~~vd~~~~~~L~~~ 199 (247)
T d1a53a_ 125 GADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDLE-----TLEINKENQRKLISM 199 (247)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCTT-----TCCBCHHHHHHHHHH
T ss_pred hcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccChh-----hhhhhhhHHHHHHhh
Confidence 1 12223333444433444 343333333322 224677777777776
Q ss_pred C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 136 L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 136 ~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
+ ++++|+.+||.+++|+.++.+ .|+|+|.||.++|.+|+..
T Consensus 200 ip~~~~~IaESGI~t~~dv~~l~~-~G~davLIGeaLmk~~d~~ 242 (247)
T d1a53a_ 200 IPSNVVKVAESGISERNEIEELRK-LGVNAFLIGSSLMRNPEKI 242 (247)
T ss_dssp SCTTSEEEEESCCCCHHHHHHHHH-TTCCEEEECHHHHHCTTHH
T ss_pred CCCCCeEEEecCCCCHHHHHHHHH-CCCCEEEECHHHcCCCchh
Confidence 5 688999999999999998876 6999999999999999743
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=98.29 E-value=1.4e-05 Score=67.36 Aligned_cols=140 Identities=12% Similarity=0.179 Sum_probs=106.6
Q ss_pred CCCCEEEEecCCCH-HHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 7 EDRPLFVQFCANDP-EILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
+..|+...+.+.++ +++.++++.+ +.||..+.|..|- .+++.-.+.++++++.+ ++.+.+.
T Consensus 4 ~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vD 68 (243)
T d1nu5a1 4 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVD 68 (243)
T ss_dssp SEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEE
Confidence 45678778776655 4555566655 4599999997651 24444456666666665 4778888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
..-+|+.++++++++.+++.++.++ ++... +.+++.++++++.+++||.+...+.++.++..+++...+|
T Consensus 69 aN~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d 138 (243)
T d1nu5a1 69 VNQGWDEQTASIWIPRLEEAGVELV-------EQPVP---RANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVD 138 (243)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTCCEE-------ECCSC---TTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCccchhHHHHHHHhcchhhhhh-------hhhhh---hccccccccchhccccccccccccccchhhhhcccccccc
Confidence 8889999999999999999998877 21111 3578889999999999999999999999999999987899
Q ss_pred EEEEehhhh
Q 023070 163 GVLSAESLL 171 (287)
Q Consensus 163 ~VmiGR~~l 171 (287)
.+++--+..
T Consensus 139 ~~~~d~~~~ 147 (243)
T d1nu5a1 139 AFSLKLCNM 147 (243)
T ss_dssp EEEECHHHH
T ss_pred ccccccccc
Confidence 999864433
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.29 E-value=2.8e-06 Score=76.22 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|-.++.+.++..++++|+|.|-|-.. . -....+.+.++.+++.. +.||.+-- --+.+.
T Consensus 103 Gv~~~~~er~~~l~~agvd~ivID~A--------~-------G~s~~~~~~i~~ik~~~~~~~iIaGN------V~T~e~ 161 (365)
T d1zfja1 103 GVTSDTFERAEALFEAGADAIVIDTA--------H-------GHSAGVLRKIAEIRAHFPNRTLIAGN------IATAEG 161 (365)
T ss_dssp CSSTTHHHHHHHHHHHTCSEEEECCS--------C-------TTCHHHHHHHHHHHHHCSSSCEEEEE------ECSHHH
T ss_pred ccCchHHHHHHHHHHcCCCEEEEECC--------c-------ccccchhHHHHHHHhhCCCcceeecc------cccHHH
Confidence 55667777777788889998655311 1 13455666777777655 67776651 123456
Q ss_pred HHHHHHcCCCEEEEeccCCC---Cc-CCCCccccHHHHHHH---HhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 96 AKMLEDAGCSLLAVHGRTRD---EK-DGKKFRADWNAIKAV---KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~---~~-~~~~~~~~~~~i~~i---~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++.|.++|+|.|.|.-.... .+ ...-+-+.+..+..+ +...++|||+.|||++.-|+.++|. .|||+||+|.
T Consensus 162 a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla-~GAd~VMlG~ 240 (365)
T d1zfja1 162 ARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALA-AGGNAVMLGS 240 (365)
T ss_dssp HHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH-TTCSEEEEST
T ss_pred HHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhh-ccCCEEEecc
Confidence 77788999999988421111 00 111123455555444 4456899999999999999999998 6999999998
Q ss_pred hhhhCcc
Q 023070 169 SLLENPA 175 (287)
Q Consensus 169 ~~l~nP~ 175 (287)
.|-.-..
T Consensus 241 ~lAg~~E 247 (365)
T d1zfja1 241 MFAGTDE 247 (365)
T ss_dssp TTTTBSS
T ss_pred hhccccC
Confidence 8765443
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=8.2e-06 Score=67.61 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=90.5
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhhHHHHHHHHHH
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLED 101 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~~~~~a~~l~~ 101 (287)
++...++.|+|.||+=+ ++|..+..+.+.+.+-+.++++.++- ..+|+=+ + .+.++....++.+.+
T Consensus 75 e~~~ai~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~ 143 (211)
T d1ub3a_ 75 EAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIR 143 (211)
T ss_dssp HHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEee----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHH
Confidence 44446788999999864 25555556888899888898887742 3345533 2 356677888999999
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+|+|+|--+.... ++.+..+.++.+++.+ ++.|=++|||+|.+++.++++ .|++-+...++
T Consensus 144 aGadfiKTSTG~~------~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~-aGa~riGtSs~ 206 (211)
T d1ub3a_ 144 GGADFLKTSTGFG------PRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLK-AGASRLGTSSG 206 (211)
T ss_dssp HTCSEEECCCSSS------SCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH-TTCSEEEETTH
T ss_pred hccceEEecCCCC------CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHH-HhhhHhccCcH
Confidence 9999995542211 1235556666666654 478999999999999999998 59997765544
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=8.9e-06 Score=67.87 Aligned_cols=141 Identities=16% Similarity=0.211 Sum_probs=99.2
Q ss_pred EEEEecC-CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 11 LFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g-~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+..+=.| .+.++..+.|++..+ +-+.|.|-. ..| --.|+-|+-...+-.+.+.+. ++-|..-+.
T Consensus 67 lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEV-------i~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlpY~~--- 133 (251)
T d1xm3a_ 67 LLPNTAGASTAEEAVRIARLAKASGLCDMIKVEV-------IGC--SRSLLPDPVETLKASEQLLEE-GFIVLPYTS--- 133 (251)
T ss_dssp EEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECC-------BCC--TTTCCBCHHHHHHHHHHHHHT-TCCEEEEEC---
T ss_pred EccchHHHhhHHHHHHHHHHHHHhcCCceEEEEE-------ecC--CCCcCCCHHHHHHHHHHHHhC-CcEEEEecC---
Confidence 4444444 588999999987654 457776652 111 124667776666666665432 566665542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+| ..+|+++++.||..|---|-.-. .+.|-.+...++.+.+..++|||+.+||.++.|+..+++ .|||+|++.
T Consensus 134 --~D-~v~ak~Le~~Gc~avMPlgsPIG---Sg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AME-lG~daVLvN 206 (251)
T d1xm3a_ 134 --DD-VVLARKLEELGVHAIMPGASPIG---SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADGVLLN 206 (251)
T ss_dssp --SC-HHHHHHHHHHTCSCBEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSEEEES
T ss_pred --CC-HHHHHHHHHcCChhHHHhhhhhh---cCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHH-ccCCEEEec
Confidence 23 35799999999998855433221 222356778889999999999999999999999999999 699999999
Q ss_pred hhhh
Q 023070 168 ESLL 171 (287)
Q Consensus 168 R~~l 171 (287)
++.-
T Consensus 207 TAIA 210 (251)
T d1xm3a_ 207 TAVS 210 (251)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8874
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.25 E-value=2e-06 Score=77.01 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=71.5
Q ss_pred HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEe
Q 023070 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN 143 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~n 143 (287)
+-++.+++..+.|+.+|--. . .+-+..+.+.|++.+.+..-...+. ..++.-.+.+..+++.+ ++|||++
T Consensus 214 ~~v~~l~~~~~~~~~~kg~~--~----~~da~~a~~~g~~~~~vsnhggr~l--d~~~~~~~~l~~i~~~~~~~~~iiad 285 (359)
T d1goxa_ 214 KDVAWLQTITSLPILVKGVI--T----AEDARLAVQHGAAGIIVSNHGARQL--DYVPATIMALEEVVKAAQGRIPVFLD 285 (359)
T ss_dssp HHHHHHHHHCCSCEEEECCC--S----HHHHHHHHHTTCSEEEECCGGGTSS--TTCCCHHHHHHHHHHHTTTSSCEEEE
T ss_pred HHHHHHHhhcccceeeeccc--c----hHHHHHHHHccccceeccccccccc--ccccchhhhchhhhhccCCccceeec
Confidence 33666676778899998322 2 2335667799999999842221111 11234456666776665 5999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|||++.-|+.++|. .|||+|++||+++.-+.
T Consensus 286 GGIR~G~Di~KALa-LGAd~vgigrp~L~~la 316 (359)
T d1goxa_ 286 GGVRRGTDVFKALA-LGAAGVFIGRPVVFSLA 316 (359)
T ss_dssp SSCCSHHHHHHHHH-HTCSEEEECHHHHHHHH
T ss_pred cCcCcHHHHHHHHH-cCCCEEEEcHHHHHHHH
Confidence 99999999999999 59999999999885433
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.24 E-value=3.2e-05 Score=64.60 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=106.6
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+..-+..++|+++.+.|+ .++.||+.+.+.+|.+ +++.-.+.++++++.+ ++.+.+...
T Consensus 4 ~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N 68 (234)
T d1jpma1 4 TLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDAN 68 (234)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred cceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHcCchhhhhhhcc
Confidence 345666677789999998887 5678999999987622 3444456666666655 477788888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++.++++.+++.+....-+= +.- .+.|++.++++++.+++||.....+.++.+..++++...+|.+
T Consensus 69 ~~~~~~~a~~~~~~le~~~~~i~~~E-----eP~---~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~~~d~v 140 (234)
T d1jpma1 69 QGWRPKEAVTAIRKMEDAGLGIELVE-----QPV---HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLI 140 (234)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCEEEEE-----CCS---CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEE
T ss_pred cccchHHHHHHHHHHHhccCceeeec-----CCc---cccCHHHHHHhhccccceeecccccccchhhhhhhccCCcCeE
Confidence 88999999999999998776543332 111 1357899999999999999999999999999999987779999
Q ss_pred EEehh
Q 023070 165 LSAES 169 (287)
Q Consensus 165 miGR~ 169 (287)
++--.
T Consensus 141 ~~d~~ 145 (234)
T d1jpma1 141 NIKLM 145 (234)
T ss_dssp EECHH
T ss_pred EEeee
Confidence 98533
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.22 E-value=1.3e-06 Score=73.94 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+++++++.+.+.|++.|+|-.-.... .. ..+.+.++.+.+.+.+||.+.|||+|.+++.++++ .|+|-|.+|+.
T Consensus 31 ~dP~~~a~~~~~~ga~~l~i~DLd~~~--~~--~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~-~Ga~kVvi~s~ 105 (239)
T d1vzwa1 31 GSPLEAALAWQRSGAEWLHLVDLDAAF--GT--GDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALA-TGCTRVNLGTA 105 (239)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEEHHHHH--TS--CCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecccc--cc--cchHHHHHHHHhhcCcceEeecccccchhhhhhhc-cccccchhhHH
Confidence 368899999999999999886433221 11 35778999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (239)
T d1vzwa1 106 ALETPEWVAKVIA 118 (239)
T ss_dssp HHHCHHHHHHHHH
T ss_pred hhhccccchhhhc
Confidence 9999999987754
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=98.21 E-value=8.7e-06 Score=69.90 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=94.5
Q ss_pred EEEEecCC--CHHHHHHHHHHHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcEEE
Q 023070 11 LFVQFCAN--DPEILLNAARRVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 11 ~~~Qi~g~--~~~~~~~aA~~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
++.=+... +.+...++++.+..|+|.|||- |.-|. +..++. .--+|. -+.+.+.++++.+++..++|+.+
T Consensus 18 li~yitaG~P~~~~~~~~l~~l~~gaDiiElGiPfSDP~ADGpvIq~A-~~rAL~~G~~~~~~~~~~~~~r~~~~~pivl 96 (271)
T d1ujpa_ 18 LIPYLTAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRA-SELALRKGMSVQGALELVREVRALTEKPLFL 96 (271)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEEeCcCCCHHHHHHHHHHHHcCCCEEEeCCCCCCcccCCCeeeee-eeeccccccchhhHHHHHHHHhcccCCcEEE
Confidence 45445554 5678888888766799999997 34554 122211 111222 26788899999999888888865
Q ss_pred EecCCCC-hhhHHHHHHHHHHcCCCEEEEe--------------------------ccCCCC-----------------c
Q 023070 82 KIRVFPN-LQDTIKYAKMLEDAGCSLLAVH--------------------------GRTRDE-----------------K 117 (287)
Q Consensus 82 KiR~g~~-~~~~~~~a~~l~~~G~~~I~vh--------------------------~rt~~~-----------------~ 117 (287)
=.-...- .....+|++.+.++|++++++- +.|... .
T Consensus 97 m~Y~N~i~~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~ 176 (271)
T d1ujpa_ 97 MTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV 176 (271)
T ss_dssp ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC
T ss_pred EeechhhhhCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcc
Confidence 4211000 0012345555555565555551 111100 0
Q ss_pred CCCCc-----c-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 118 DGKKF-----R-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 118 ~~~~~-----~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
.+-+| + .--+.++++++.+++||.+.=||++++++.. +. +||||+||++++
T Consensus 177 ~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~-~~--~ADGvIVGSAiV 233 (271)
T d1ujpa_ 177 TGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ-AA--VADGVVVGSALV 233 (271)
T ss_dssp ------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH-HT--TSSEEEECHHHH
T ss_pred cCccCccccchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHH-hC--CCCEEEEcHHHH
Confidence 01111 1 1246789999999999999889999999975 33 799999999986
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.19 E-value=6.6e-06 Score=79.54 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC------CccccH-HHHH
Q 023070 59 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK------KFRADW-NAIK 130 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~------~~~~~~-~~i~ 130 (287)
..++-+.++|..+++.. +.||+||+-.+.. ...++..+.++|+|+|+|.|......... .| .-| ..+.
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~---~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~G-lP~~~~l~ 628 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSRSG---IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAG-LPWEMGLS 628 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSC-CCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCcCc---HHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCC-cCHHHHHH
Confidence 35778889999999866 8999999876543 33556667789999999987654321100 01 112 1233
Q ss_pred HHHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 131 AVKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 131 ~i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+. + +|.+++.||+.|+.|+.+++. .|||+|.+||++|-
T Consensus 629 ~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~a-LGAD~v~~gt~~m~ 676 (771)
T d1ea0a2 629 EVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM-LGAEEFGIGTASLI 676 (771)
T ss_dssp HHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH-TTCSEEECCHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH-hCCCchHHhHHHHH
Confidence 33222 2 599999999999999999998 69999999999874
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=2.2e-05 Score=66.59 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=88.3
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHHHHc
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDA 102 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l~~~ 102 (287)
++...++.|+|.||+=+ ++|.....+.+.+.+-++++++.+ +.++-|=+-.+ .+.++....++.+.++
T Consensus 108 Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~a 177 (251)
T d1o0ya_ 108 EAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLA 177 (251)
T ss_dssp HHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCceEEEEe----------ccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHh
Confidence 34446778999999854 245555567888888888888776 34443333322 3556677888889999
Q ss_pred CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
|+|+|--+.... ++.+..+.++.+++.+ ++.|=++|||+|++++.++++ .|+|-+...+
T Consensus 178 GadfvKTSTGf~------~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~-aGa~riGtSs 238 (251)
T d1o0ya_ 178 GAHFVKTSTGFG------TGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIM-YGADRIGTSS 238 (251)
T ss_dssp TCSEEECCCSSS------SCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESC
T ss_pred CcceeeccCCCC------CCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHH-HhhHHhCCCc
Confidence 999995542211 1235556666666543 478899999999999999998 5999865443
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.13 E-value=3.3e-05 Score=64.11 Aligned_cols=117 Identities=20% Similarity=0.359 Sum_probs=78.2
Q ss_pred ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc-----------
Q 023070 44 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR----------- 112 (287)
Q Consensus 44 P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r----------- 112 (287)
|.. .|+.+ |-+=|.+|..+.+|+++ +.+||..|.|+|... -++.|++.|++++.=+..
T Consensus 32 pad-iR~~G-GvaRm~dp~~i~ei~~~----vsipvmak~righ~~-----eaqiLe~~~vd~ideseVLTpad~~~hi~ 100 (254)
T d1znna1 32 PAD-IRAAG-GVARMADPTVIEEVMNA----VSIPVMAKVRIGHYV-----EARVLEALGVDYIDESEVLTPADEEFHID 100 (254)
T ss_dssp --------C-CCCCCCCHHHHHHHHHH----CSSCEEEEEETTCHH-----HHHHHHHHTCSEEEEETTSCCSCSSCCCC
T ss_pred CHH-HHhcC-CcccCCCHHHHHHHHHh----cccccccccCCCchH-----HHHhHHhhCCCcccHhHhcccccHHHhhc
Confidence 443 34443 77889999999988886 479999999997631 266777888888755210
Q ss_pred -------------C--------CCC-----cCCCCc------------------------------------cccHHHHH
Q 023070 113 -------------T--------RDE-----KDGKKF------------------------------------RADWNAIK 130 (287)
Q Consensus 113 -------------t--------~~~-----~~~~~~------------------------------------~~~~~~i~ 130 (287)
+ .+. +.+..+ ...++.+.
T Consensus 101 k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~ 180 (254)
T d1znna1 101 KRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR 180 (254)
T ss_dssp GGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHH
T ss_pred ccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHH
Confidence 0 000 000000 12345566
Q ss_pred HHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 131 AVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 131 ~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+. +++|+++.|||.||.|+..+++ .|||||.+|+++..
T Consensus 181 ~v~~~g~l~v~~~~~~Gi~tpadaa~~Me-lG~dgV~v~s~I~~ 223 (254)
T d1znna1 181 EIKRLGRLPVVNFAAGGVTTPADAALMMH-LGADGVFVGSGIFK 223 (254)
T ss_dssp HHHHHTSCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECGGGGG
T ss_pred HHHHhCCCCceEEecCCCCChhhHHHHHH-cCCCEEEEcchhhc
Confidence 66653 6799999999999999999998 69999999999864
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.11 E-value=3.8e-06 Score=69.43 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=62.6
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
-++...+.|+|++.+.+...........+..|+.++++++..++||++-||| +.+++.++++ .|+|||.+.++++..+
T Consensus 111 e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~-~Ga~gvAvis~I~~~~ 188 (206)
T d1xi3a_ 111 EALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLK-TGVDGIAVISAVMGAE 188 (206)
T ss_dssp HHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHT-TTCSEEEESHHHHTSS
T ss_pred HHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHH-hCCCEEEEhHHHHCCC
Confidence 3556678899999998765543322223568999999999999999999999 6688998888 6999999999999766
Q ss_pred cc
Q 023070 175 AL 176 (287)
Q Consensus 175 ~l 176 (287)
+.
T Consensus 189 dp 190 (206)
T d1xi3a_ 189 DV 190 (206)
T ss_dssp SH
T ss_pred CH
Confidence 53
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.06 E-value=0.00012 Score=61.33 Aligned_cols=146 Identities=17% Similarity=0.240 Sum_probs=99.2
Q ss_pred EEEecC-CCHHHHHHHHHHHcC-C--CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 12 FVQFCA-NDPEILLNAARRVEP-Y--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 12 ~~Qi~g-~~~~~~~~aA~~~~~-g--~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
..+-.| .++++..++|++..+ + -+.|.+..- .+ --.|+.|+-...+..+.+.+. ++-|..-+.
T Consensus 69 LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEVi-------~d--~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~~--- 135 (243)
T d1wv2a_ 69 LPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVL-------AD--QKTLFPNVVETLKAAEQLVKD-GFDVMVYTS--- 135 (243)
T ss_dssp EEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCB-------SC--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEEC---
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCceEEEeee-------cc--ccccCCcHHHHHHHHHHhhcC-ceEEEeccC---
Confidence 344444 588999999997654 3 378888732 11 124566776666666665432 455554432
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+| .-+++++++.|+..+---|-.-. ...|-.+...++.+++..++|||+.+||.++.|+..+++ .|||+|.++
T Consensus 136 --~D-~v~ak~le~~Gc~~vMplgsPIG---sg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AME-lG~dgVLvn 208 (243)
T d1wv2a_ 136 --DD-PIIARQLAEIGCIAVMPLAGLIG---SGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAVLMN 208 (243)
T ss_dssp --SC-HHHHHHHHHSCCSEEEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEEEES
T ss_pred --CC-HHHHhHHHHcCceeeeecccccc---cccccccHHHHHhccccCCcceEeecccCCHHHHHHHHH-ccCCEEEec
Confidence 22 45799999999987744332211 122345667788888889999999999999999999999 599999999
Q ss_pred hhhhh--Cccch
Q 023070 168 ESLLE--NPALF 177 (287)
Q Consensus 168 R~~l~--nP~lf 177 (287)
++... ||-..
T Consensus 209 saIa~A~dP~~m 220 (243)
T d1wv2a_ 209 TAIAHAKDPVMM 220 (243)
T ss_dssp HHHHTSSSHHHH
T ss_pred hHhhcCCCHHHH
Confidence 99853 45433
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.04 E-value=6.2e-05 Score=63.42 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
|.+++.+.+.++ .++.||..+-+..|. .+.+.-.+.++++++.+ ++.+.+...-+|+..+++
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC---------------CCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 568999988887 567799999998652 23555667778887765 577888888899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc-----cEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC-----EGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga-----d~Vmi 166 (287)
++++.+++.++.++- +.-. +.|++.++++++.+++||.+.-.+.++.++.++++. |+ |.+++
T Consensus 83 ~~~~~l~~~~i~wiE-------eP~~---~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~-~a~~~~~Di~~~ 149 (247)
T d1tzza1 83 AYAKMLRDYPLFWYE-------EVGD---PLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY-GGMRPDRDWLQF 149 (247)
T ss_dssp HHHHHHTTSCCSEEE-------CCSC---TTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHH-SCCCTTTCEECC
T ss_pred HHHhhcchhhhhhhc-------cccc---cccchhhhhhhhccccccccchhhhhhHHHHHHHHc-cCCcCcceeEee
Confidence 999999999988772 1111 357889999999999999999999999999999985 43 56655
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.03 E-value=3.2e-05 Score=64.92 Aligned_cols=132 Identities=13% Similarity=0.070 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHH
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLED 101 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~ 101 (287)
..++...++.|+|.||+-+. +|.......+.+.++++.++ ..+.++-|-+-.+ .+.++....++.+.+
T Consensus 91 ~~E~~~Ai~~GAdEID~Vin----------~~~~~~~~~~ev~~~~~~~~-~~g~~lKVIlEt~~L~~~~i~~a~~~a~~ 159 (234)
T d1n7ka_ 91 LVEAQTVLEAGATELDVVPH----------LSLGPEAVYREVSGIVKLAK-SYGAVVKVILEAPLWDDKTLSLLVDSSRR 159 (234)
T ss_dssp HHHHHHHHHHTCCEEEECCC----------GGGCHHHHHHHHHHHHHHHH-HTTCEEEEECCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEec----------hhhhhhhhHHHHHHHHHHHh-ccCceEEEEEeccccchHHHHHHHHHHHH
Confidence 33444467789999998531 22222233455666666543 3355555544433 355677788888899
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+|+|+|--+.+... .+. .+.+...+.+.....++.|=++|||+|.+++.++++ .|++-+....+
T Consensus 160 aGadFVKTSTG~~~--~ga-t~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~-aGa~rIGtSs~ 223 (234)
T d1n7ka_ 160 AGADIVKTSTGVYT--KGG-DPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVG-AGADIIGTSSA 223 (234)
T ss_dssp TTCSEEESCCSSSC--CCC-SHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHH-TTCSEEEETTH
T ss_pred hhhhheeecccccC--CCC-CHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHH-ccCceeecchH
Confidence 99999954322111 000 012223333333334688999999999999999998 59997654443
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.01 E-value=8.2e-06 Score=73.14 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHH
Q 023070 62 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 62 ~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+.+.+.++.+++.. .+||.+.- --+.+.++.|.++|+|.|-|-- .|+... .-+.+.+..+.++.
T Consensus 136 ~~v~~~i~~ir~~~~~~~~IiAGN------VaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~t--GvG~Pq~sAv~e~a 207 (362)
T d1pvna1 136 EWQKITIGWIREKYGDKVKVGAGN------IVDGEGFRYLADAGADFIKIGIGGGSICITREQK--GIGRGQATAVIDVV 207 (362)
T ss_dssp HHHHHHHHHHHHHHGGGSCEEEEE------ECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHT--CBCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccceeeeccc------ccCHHHHHHHHHhCCcEEEecccccccccchhhh--ccCCchHHHHHHHH
Confidence 44566677765433 57787762 1223556778899999998831 122111 11235566665553
Q ss_pred hh---------CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NA---------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~---------~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
.. .++|||+.|||+++-|+.++|. .|||+||+|.-|-
T Consensus 208 ~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla-~GAd~VM~G~~lA 253 (362)
T d1pvna1 208 AERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-MGADFIMLGRYFA 253 (362)
T ss_dssp HHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred HHHHHhhhhcccCCceeeccccCcccceeEEEE-Eeccceeehhhhh
Confidence 32 3599999999999999999998 6999999998764
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=97.97 E-value=4.5e-05 Score=64.52 Aligned_cols=125 Identities=11% Similarity=0.131 Sum_probs=95.9
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
|.+|+++.+-|+ .++.||..+.+..|. +++.-.+.++++++.+ ++.+.+...-+|+.++++
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~ 76 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 76 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC----------------CHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHH
Confidence 567888888666 667899999998753 2444456677777765 577888888899999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++++.+++.++.++- +.- .+.|+....++++. +++||.+.-.+.++.++.++++...+|.+++-
T Consensus 77 ~~~~~l~~~~~~~iE-------eP~---~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d 141 (252)
T d1yeya1 77 DWMRQLAEFDIAWIE-------EPT---SPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 141 (252)
T ss_dssp HHHHTTGGGCCSCEE-------CCS---CTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred HHHHhhhhcCceeec-------CCc---chhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceeccc
Confidence 999999999988772 111 13567777776665 68999999999999999999998788999873
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.97 E-value=3.6e-05 Score=63.96 Aligned_cols=150 Identities=19% Similarity=0.354 Sum_probs=99.9
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEEEE--ecc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYVDI--NLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~Idi--N~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.++++|...|...+.+..+.+ +.|+|.|-+ --| +|. . .+| + +.++.+++..++|+.+-+-
T Consensus 3 kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn--~---s~g------~----~~i~~i~~~t~~~~dvHLM 67 (217)
T d2flia1 3 KIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPN--I---SFG------A----DVVASMRKHSKLVFDCHLM 67 (217)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC--B---CBC------H----HHHHHHHTTCCSEEEEEEE
T ss_pred EEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCc--c---ccC------H----HHHHHHHhcCCCceEeEEE
Confidence 367889999999999888866 458886544 323 332 1 112 2 4567777777888888764
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCC
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKK 121 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~ 121 (287)
. .++..+++.+.++|++.|++|.-+... ..++.
T Consensus 68 v----~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~ 143 (217)
T d2flia1 68 V----VDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFG 143 (217)
T ss_dssp S----SSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCS
T ss_pred e----cCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccc
Confidence 4 233445677778899999998532110 01111
Q ss_pred c----cccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 122 F----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 122 ~----~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
| +..++.++++++. .+++|.+-|||+ .+.+..+.+ .|||.+.+|++++.++++-+.+
T Consensus 144 Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~-aGad~~V~Gsaif~~~d~~~~i 209 (217)
T d2flia1 144 GQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYE-AGANVFVAGSYLFKASDLVSQV 209 (217)
T ss_dssp SCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHH-HTCCEEEESHHHHTSSCHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHH-CCCCEEEEchHHhCCCCHHHHH
Confidence 1 2235556666542 468899999996 478888887 5999999999999888765544
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=97.96 E-value=2.7e-05 Score=75.49 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHH-HHHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWN-AIKA 131 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~-~i~~ 131 (287)
.++-+.++|..+++.. +.||+||+-.... ...++..+.++|+|+|+|.|........ ..| .-|+ .+.+
T Consensus 581 siedL~q~I~~Lr~~~~~~pv~vKl~~~~g---~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~G-lP~~~gl~~ 656 (809)
T d1ofda2 581 SIEDLAQLIYDLHQINPEAQVSVKLVAEIG---IGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAG-SPWELGVTE 656 (809)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECSTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBC-CCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeecC---hHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCC-ccHHHHHHH
Confidence 5778889999998865 7899999865433 2245566668999999998765432110 000 1121 1222
Q ss_pred HHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 132 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 132 i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+.+. + +|.+++.||++|+.|+.+++. .|||.|.+||++|--
T Consensus 657 a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~a-LGAD~v~~gt~~l~a 704 (809)
T d1ofda2 657 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAAL-MGAEEYGFGSIAMIA 704 (809)
T ss_dssp HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH-TTCSEEECSHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH-hCCCchhHhHHHHHH
Confidence 2222 2 589999999999999999998 699999999998743
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=97.94 E-value=5.9e-05 Score=63.21 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCCCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEE
Q 023070 7 EDRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vK 82 (287)
+..|+-+.++ +.+|+++.+.++ ..+.||..+-|..| | ..|.+ .++++++.+ ++.+.+.
T Consensus 3 ~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~-------------~~Di~----~i~~ir~~~g~~~~l~vD 64 (242)
T d1sjda1 3 DSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDVE----PVRAVRERFGDDVLLQVD 64 (242)
T ss_dssp SEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSHH----HHHHHHHHHCTTSEEEEE
T ss_pred CeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c-------------hhHHH----HHHHHHHHhCCCeeEeec
Confidence 3467777876 468999998777 55679999999864 1 13444 445555544 5778888
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
...+|+..+++++++ +++.++.+|- +.- .+.|++.++++++.+++||.+.-.+.+..++.++++...+|
T Consensus 65 aN~~~~~~~a~~~~~-l~~~~~~~iE-------eP~---~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d 133 (242)
T d1sjda1 65 ANTAYTLGDAPQLAR-LDPFGLLLIE-------QPL---EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQ 133 (242)
T ss_dssp CTTCCCGGGHHHHHT-TGGGCCSEEE-------CCS---CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred cccccchhhhhHHhh-hhhhhhHHHH-------hhh---hhhhHHHHHHHHhccCcccccccccccchhhhhhhhcCccC
Confidence 888899999999886 8999988762 111 14678889999999999999999999999999999987799
Q ss_pred EEEEe
Q 023070 163 GVLSA 167 (287)
Q Consensus 163 ~VmiG 167 (287)
.+++-
T Consensus 134 ~~~~d 138 (242)
T d1sjda1 134 IVNIK 138 (242)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99883
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=97.94 E-value=0.00015 Score=60.09 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=99.3
Q ss_pred EecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChh
Q 023070 14 QFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQ 90 (287)
Q Consensus 14 Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~ 90 (287)
.....+++.+.+-++ ..+.||..+.|..|-+ +++.-.+.++++++.+ ++.+.+...-+|+.+
T Consensus 7 ~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~ 71 (227)
T d2mnra1 7 SHSLDGVKLATERAVTAAELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVP 71 (227)
T ss_dssp ECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHH
T ss_pred cCCCCcHHHHHHHHHHHHHCCCCEEEEccCCC---------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCChH
Confidence 344567777777555 5677999999986522 2334455667777665 578888888899999
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.++++.+++.|+.++ ++.- .+.+++..+++++.+++||.+.-.+.+++++..+++...+|.+++
T Consensus 72 ~A~~~~~~l~~~~~~~i-------EeP~---~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~ 137 (227)
T d2mnra1 72 AAIKRSQALQQEGVTWI-------EEPT---LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMP 137 (227)
T ss_dssp HHHHHHHHHHHHTCSEE-------ECCS---CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHhhhchhhhh-------cCcc---cccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCceeeeec
Confidence 99999999999998877 2211 135788899999999999999899999999999999888888876
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=97.90 E-value=7.3e-05 Score=62.76 Aligned_cols=132 Identities=15% Similarity=0.211 Sum_probs=100.8
Q ss_pred CCCCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
+..|+...++ ..++|++.+-++ ..+.||+.+.+..|. + .| .+.++++++.+ +..+.+..
T Consensus 3 ~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~-------~-------~D----~~~v~~ir~~~~~~~l~vDa 64 (244)
T d1wufa1 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP-------N-------KD----IQFVEAVRKSFPKLSLMADA 64 (244)
T ss_dssp SEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT-------T-------BS----HHHHHHHHTTCTTSEEEEEC
T ss_pred CeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC-------c-------HH----HHHHHHHHHhccchhhhhhh
Confidence 4457777775 358999988776 566799999998652 0 22 34567777766 46677777
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+.+++. +++.+++.++.++ ++.- .+.|++.++++++.+++||.+...+.++.++.++++...+|.
T Consensus 65 N~~~~~~~a~-~~~~l~~~~~~wi-------EeP~---~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~ 133 (244)
T d1wufa1 65 NSAYNREDFL-LLKELDQYDLEMI-------EQPF---GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRA 133 (244)
T ss_dssp TTCCCGGGHH-HHHTTGGGTCSEE-------ECCS---CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred hccccchhhh-hhhcccccchhhh-------cCcc---cccchhhhhccccccccccccCccccchhhhhhhccccccce
Confidence 7789988887 5678899998776 2211 135788899999999999999999999999999999877899
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
+++-
T Consensus 134 v~~d 137 (244)
T d1wufa1 134 INLK 137 (244)
T ss_dssp EEEC
T ss_pred eecc
Confidence 9884
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.87 E-value=2.2e-05 Score=70.35 Aligned_cols=127 Identities=14% Similarity=0.104 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHH
Q 023070 19 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 19 ~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
.|+++.++..+++.|+|.|-|... . | ..+.+.+.++.+++..++||.+--- -+.+. +
T Consensus 114 ~~~~~~r~~~l~~aGvd~ivID~A--------~--G-----h~~~~i~~lK~ir~~~~~~vIaGNV--aT~e~----~-- 170 (368)
T d2cu0a1 114 SPFDIKRAIELDKAGVDVIVVDTA--------H--A-----HNLKAIKSMKEMRQKVDADFIVGNI--ANPKA----V-- 170 (368)
T ss_dssp CTTCHHHHHHHHHTTCSEEEEECS--------C--C-----CCHHHHHHHHHHHHTCCSEEEEEEE--CCHHH----H--
T ss_pred ChHHHHHHHHHHHcCCCEEEecCc--------c--c-----chhhhhhhhhhhhhhcccceeeccc--cCHHH----H--
Confidence 456677777788889998877521 1 1 2344566778888877778766411 12222 2
Q ss_pred HHHcCCCEEEEe--cc----CCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 99 LEDAGCSLLAVH--GR----TRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 99 l~~~G~~~I~vh--~r----t~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+...|+|+|-|- +. |+.. .+-+.+.+..+..+.+ ..++|||+.|||++.-|+.++|. .|||.||+|..
T Consensus 171 ~~l~gaD~VkVGIG~Gs~CTTr~~--tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla-~GAd~VMlG~~ 247 (368)
T d2cu0a1 171 DDLTFADAVKVGIGPGSICTTRIV--AGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIA-AGADAVMLGNL 247 (368)
T ss_dssp TTCTTSSEEEECSSCSTTBCHHHH--TCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTT
T ss_pred HhhhcCcceeecccCcccccchhh--cccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeee-eccceeeccch
Confidence 223689999873 11 1111 1223455666655543 34799999999999999999998 69999999987
Q ss_pred hh
Q 023070 170 LL 171 (287)
Q Consensus 170 ~l 171 (287)
+-
T Consensus 248 lA 249 (368)
T d2cu0a1 248 LA 249 (368)
T ss_dssp TT
T ss_pred hc
Confidence 64
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=0.00017 Score=59.09 Aligned_cols=146 Identities=15% Similarity=0.184 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh-hh----hc---C--cccccccCChHHHHHHHHHHhhccC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR-IA----RR---G--NYGAFLMDNLPLVKSLVEKLALNLN 76 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~-~~----~~---~--~~G~~l~~~~~~~~~iv~~v~~~~~ 76 (287)
+.|++.=|.+.++++....++. ++.|++.+||.+-+|.. .+ ++ . ..|+.-..+++.+.+.+++= .+
T Consensus 8 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aG---a~ 84 (202)
T d1wa3a1 8 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESG---AE 84 (202)
T ss_dssp HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHT---CS
T ss_pred hCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhc---cc
Confidence 3578888999999999999995 56689999999988873 11 11 1 12333334555555554441 12
Q ss_pred CcEEEEecCCCChhhHHHH-----------------HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 77 VPVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~-----------------a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+.| ..+.+ .+..+. +....++|++.+-+++-.. .--.+++.++.-. ++
T Consensus 85 --fiv--sP~~~-~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~---------~G~~~lk~l~~p~p~i 150 (202)
T d1wa3a1 85 --FIV--SPHLD-EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEV---------VGPQFVKAMKGPFPNV 150 (202)
T ss_dssp --EEE--CSSCC-HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHH---------HHHHHHHHHHTTCTTC
T ss_pred --EEe--CCCCc-HHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEecchhh---------cCHHHHHHHhCcccCC
Confidence 221 12222 111111 1123456666666543211 0125677777654 69
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|++..||| |.+++.+.++ .|+.+|.+|+.++.
T Consensus 151 ~~iptGGI-~~~n~~~~l~-aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 151 KFVPTGGV-NLDNVCEWFK-AGVLAVGVGSALVK 182 (202)
T ss_dssp EEEEBSSC-CTTTHHHHHH-HTCSCEEECHHHHC
T ss_pred cEEeeCCC-CHHHHHHHHH-CCCeEEEEchhhcC
Confidence 99999999 6899999998 59999999987774
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=1.3e-05 Score=67.72 Aligned_cols=87 Identities=15% Similarity=0.332 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-..... + .+.+...+..+++ ..+|+...|||+|.++++++++ .|+|-|.+++.
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~-~--~~~~~~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~-~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIE-N--SGENLPVLEKLSE-FAEHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHH-C--CCTTHHHHHHGGG-GGGGEEEESSCCSHHHHHHHHH-TTCCEEEECHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc-c--CCcchhheehhcc-cccchhhhhhhhhhhhhhhccc-cccceEecCcc
Confidence 5788999999999999998864322110 1 1344455555554 4589999999999999999998 69999999999
Q ss_pred hhhCccchhchh
Q 023070 170 LLENPALFAGFR 181 (287)
Q Consensus 170 ~l~nP~lf~~~~ 181 (287)
++.||.+.....
T Consensus 105 ~~~~~~~~~~~~ 116 (241)
T d1qo2a_ 105 VLEDPSFLKSLR 116 (241)
T ss_dssp HHHCTTHHHHHH
T ss_pred cccCchhhhhhc
Confidence 999999887654
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=97.75 E-value=0.00016 Score=60.47 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=97.9
Q ss_pred CCCCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
+..|+-..++ ..+++.+.+.++ ..+.||+.+-|..| | + .|.+ .++++++.+ ++.+.+..
T Consensus 3 ~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~---------~----~D~~----~v~~ir~~~~d~~l~vD~ 64 (243)
T d1r0ma1 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P---------G----WDVQ----PVRATREAFPDIRLTVDA 64 (243)
T ss_dssp SEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T---------T----BSHH----HHHHHHHHCTTSCEEEEC
T ss_pred CEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c---------c----hhHH----HHHHHHHhccCceEEEec
Confidence 3456667765 468998877776 56789999998764 1 1 2333 445555554 57788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+..++..+ +.+.+.++.+| ++.-. +.+++..+++++.+++||.+.-.+.++.++.++++...+|.
T Consensus 65 n~~~~~~~a~~~-~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~ 133 (243)
T d1r0ma1 65 NSAYTLADAGRL-RQLDEYDLTYI-------EQPLA---WDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGV 133 (243)
T ss_dssp TTCCCGGGHHHH-HTTGGGCCSCE-------ECCSC---TTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSE
T ss_pred cccCchHHHHHh-hhhhhccchhh-------hhhcc---ccchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccc
Confidence 888998888775 67888887766 11111 35788899999999999999999999999999999888999
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 134 v~~ 136 (243)
T d1r0ma1 134 INL 136 (243)
T ss_dssp EEE
T ss_pred eec
Confidence 987
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=0.00026 Score=59.77 Aligned_cols=136 Identities=11% Similarity=0.210 Sum_probs=98.8
Q ss_pred CCCCEEEEecC--CCHHHHHHH---HH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCc
Q 023070 7 EDRPLFVQFCA--NDPEILLNA---AR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVP 78 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~a---A~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~p 78 (287)
+..|+-..+.+ ..++.+.+. ++ .++.||..+-|.+| | .+++.-.+.++++++.+ +++
T Consensus 4 d~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-----------~----~~~~~di~~v~avr~~~G~~~~ 68 (256)
T d2gdqa1 4 EEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIG-----------G----TSFKEDVRHINALQHTAGSSIT 68 (256)
T ss_dssp SEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECS-----------S----SCHHHHHHHHHHHHHHHCTTSE
T ss_pred CeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-----------C----CCHHHHHHHHHHHHHHcCCCeE
Confidence 34566666543 344444433 33 45679999999864 1 23444466777887776 688
Q ss_pred EEEEecCCCChhhHHHHHHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
+.+....+|+.++++++++.+++. ++.++ ++.-. +.|++.++++++.+++||.+.-.+.+.+++.++++
T Consensus 69 l~vDan~~~~~~~A~~~~~~l~~~~~i~~~-------EeP~~---~~d~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~ 138 (256)
T d2gdqa1 69 MILDANQSYDAAAAFKWERYFSEWTNIGWL-------EEPLP---FDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLS 138 (256)
T ss_dssp EEEECTTCCCHHHHHTTHHHHTTCSCEEEE-------ECCSC---SSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHH
T ss_pred EeeccccCCCHHHHHHHHHHHhhcCceeEe-------ccccc---cchHHHHHHHhhcccceeecCccccchhhHHHHHH
Confidence 999988899999999999999873 55544 11111 35788999999999999988888999999999999
Q ss_pred hcCccEEEEe
Q 023070 158 ETGCEGVLSA 167 (287)
Q Consensus 158 ~~gad~VmiG 167 (287)
...+|.+++-
T Consensus 139 ~~a~di~~~d 148 (256)
T d2gdqa1 139 QRCLDIIQPD 148 (256)
T ss_dssp TTCCSEECCC
T ss_pred hhcceeeecc
Confidence 8888888764
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=97.69 E-value=0.00035 Score=58.31 Aligned_cols=156 Identities=15% Similarity=0.286 Sum_probs=102.6
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHH-cCCCCEE--EEecc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcE
Q 023070 5 PPEDRPLFVQFCANDPEILLNAARRV-EPYCDYV--DINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPV 79 (287)
Q Consensus 5 ~~~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~I--diN~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv 79 (287)
+..+--+.++|...|...+.+..+.+ +.|+|.| ||-=| +|.. .+| .++++.+++..++|+
T Consensus 7 ~~~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~----------~~~v~~i~~~t~~~~ 71 (230)
T d1rpxa_ 7 SKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----TIG----------PLVVDSLRPITDLPL 71 (230)
T ss_dssp CTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC----------HHHHHHHGGGCCSCE
T ss_pred ccCCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----ccC----------hHHHhhhhhccCcee
Confidence 34455688999999999999999876 5578764 44322 4431 122 345667777777887
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC----------------------------C---------------
Q 023070 80 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------------------------E--------------- 116 (287)
Q Consensus 80 ~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~----------------------------~--------------- 116 (287)
.+-+-. .+...+++.+.++|++.|++|.-... .
T Consensus 72 dvHLMv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM 147 (230)
T d1rpxa_ 72 DVHLMI----VEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIM 147 (230)
T ss_dssp EEEEES----SSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEE
T ss_pred eeeeee----cchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEE
Confidence 776533 35566677777888888888742100 0
Q ss_pred --cCCCCc----cccHHHHHHHHh-----hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 117 --KDGKKF----RADWNAIKAVKN-----ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 117 --~~~~~~----~~~~~~i~~i~~-----~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
..++.| +.-++.++++++ ..++.|.+-|||+. +.+..+.+ .|||.+++|++++.+++.-..++
T Consensus 148 ~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~-~Gad~~V~GS~if~~~d~~~~i~ 221 (230)
T d1rpxa_ 148 SVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIE-AGANALVAGSAVFGAPDYAEAIK 221 (230)
T ss_dssp SSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHH-HTCCEEEESHHHHTSSCHHHHHH
T ss_pred EecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHH-cCCCEEEEChHHHCCCCHHHHHH
Confidence 011111 122455555433 24688999999975 78888887 69999999999999888655443
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00038 Score=58.68 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=83.0
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C-------
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F------- 86 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g------- 86 (287)
+++..+.|+++|.+.. -...|||++. . +..+++.+++||-.|==+ |
T Consensus 73 ~a~~~~~gA~aiSVLT-------e~~~F~Gs~~----~----l~~v~~~~~~PiLrKDFIid~~QI~ear~~GADavLLI 137 (254)
T d1piia2 73 IAAIYKHYASAISVLT-------DEKYFQGSFN----F----LPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLM 137 (254)
T ss_dssp HHHHHTTTCSEEEEEC-------CSTTTCCCTT----H----HHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHhccCceEEec-------ccccCCCCHH----H----HHHHHhccccccchhcccCcHHHHHHHHhhccchhhhh
Confidence 4556667899998873 2234566532 2 345566778898887311 1
Q ss_pred ---CChhhHHHHHHHHHHcCCCEE-EEec-------------------cCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 87 ---PNLQDTIKYAKMLEDAGCSLL-AVHG-------------------RTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 87 ---~~~~~~~~~a~~l~~~G~~~I-~vh~-------------------rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++..++.+...+.|.+.+ -||. |.-. +...|++...++...+ ++.+|
T Consensus 138 ~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRnL~-----tf~vd~~~t~~L~~~ip~~~~~V 212 (254)
T d1piia2 138 LSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLR-----DLSIDLNRTRELAPKLGHNVTVI 212 (254)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETT-----TTEECTHHHHHHHHHHCTTSEEE
T ss_pred HhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCccccchh-----hhhhhhHHHHHHHHhCCCCCEEE
Confidence 122334445555555555444 3442 3221 1245667666666654 57789
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
+.+||.+++|+.. +. .|+|+|.||.++|..|+.-..
T Consensus 213 sESGI~~~~d~~~-l~-~g~davLiGeslm~~~dp~~~ 248 (254)
T d1piia2 213 SESGINTYAQVRE-LS-HFANGFLIGSALMAHDDLHAA 248 (254)
T ss_dssp EESCCCCHHHHHH-HT-TTCSEEEECHHHHTCSCHHHH
T ss_pred EcCCCCCHHHHHH-HH-cCCCEEEEChHHhCCCCHHHH
Confidence 9999999999976 46 489999999999988875443
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=97.57 E-value=0.00045 Score=57.49 Aligned_cols=138 Identities=16% Similarity=0.233 Sum_probs=98.7
Q ss_pred CCCCEEEEec-CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRPLFVQFC-ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~-g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
+..|+.+.++ +.+++++.+.++ .++.||+.+.|..| | ..+.+. ++++++.+ ++.+.+..
T Consensus 3 ~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~-------------~~D~~~----v~~ir~~~~d~~l~vDa 64 (241)
T d1wuea1 3 RKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVEP----VALIRQHFPNLPLMVDA 64 (241)
T ss_dssp SEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHHH----HHHHHHHCTTSCEEEEC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c-------------cHHHHH----HHHHHHhccccceeecc
Confidence 3457766653 357777777666 66789999999865 1 124444 44555544 57788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+.+++..+. ++.+.++.+| ++.-. ..+++.++++++.+++||.+.-.+.++.++..+++...+|.
T Consensus 65 N~~~~~~~a~~~~-~~~~~~i~~i-------EeP~~---~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~ 133 (241)
T d1wuea1 65 NSAYTLADLPQLQ-RLDHYQLAMI-------EQPFA---ADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRS 133 (241)
T ss_dssp TTCCCGGGHHHHH-GGGGSCCSCE-------ECCSC---TTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred cccCCHHHhhhhh-hhhhhhhhhh-------cCccc---ccchhhhhhhhcccccccccCcccccchhhhhhhhhhhhhh
Confidence 8889988888764 4667777655 21111 34688899999999999999999999999999999878999
Q ss_pred EEEehhhhhC
Q 023070 164 VLSAESLLEN 173 (287)
Q Consensus 164 VmiGR~~l~n 173 (287)
+++--+-++.
T Consensus 134 i~~d~~~~GG 143 (241)
T d1wuea1 134 INLKIPRVGG 143 (241)
T ss_dssp EEECHHHHTS
T ss_pred hccccccccC
Confidence 9986444433
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00017 Score=60.89 Aligned_cols=136 Identities=19% Similarity=0.174 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC--C-CChhhHH-HHHH
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV--F-PNLQDTI-KYAK 97 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~--g-~~~~~~~-~~a~ 97 (287)
..++...++.|+|.||+=+ | ||.....+.+.+.+-++++++.+ ..++.+|+=+ + .+.++.+ ..++
T Consensus 87 ~~E~~~Ai~~GAdEID~Vi--n--------~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ 156 (250)
T d1p1xa_ 87 LAETRAAIAYGADEVDVVF--P--------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASE 156 (250)
T ss_dssp HHHHHHHHHHTCSEEEEEC--C--------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEee--c--------chhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHH
Confidence 3344456788999999853 2 34444456777777777777654 2344455433 2 1223443 4567
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-------CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-------~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+.++|+++|--+.+... +.+..+.++.+++. .++.|=++|||+|++++.++++. |++.+ |..+
T Consensus 157 ia~~aGadFvKTSTG~~~------~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~-ga~~i--G~~~ 227 (250)
T d1p1xa_ 157 ISIKAGADFIKTSTGKVA------VNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI-ADELF--GADW 227 (250)
T ss_dssp HHHHTTCSEEECCCSCSS------CCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHH-HHHHH--CTTS
T ss_pred HHHHcCcCeEEecCCcCC------CCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHH-HHHHh--Cccc
Confidence 789999999954322111 12333433333222 25889999999999999999984 66542 4444
Q ss_pred hhCccchh
Q 023070 171 LENPALFA 178 (287)
Q Consensus 171 l~nP~lf~ 178 (287)
+ +|..|+
T Consensus 228 ~-~~~~fR 234 (250)
T d1p1xa_ 228 A-DARHYR 234 (250)
T ss_dssp C-STTTBC
T ss_pred c-ccCcee
Confidence 3 677775
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.50 E-value=0.00083 Score=55.69 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=75.0
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhhHHHHHHHHHHcCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~~~~~a~~l~~~G~ 104 (287)
+.+.+|+|.||+=+. +|.....+.+.+.+-+.++++.++ +..+|+=+ + .+.++....++.+.++|+
T Consensus 74 ~a~~~GAdEID~Vin----------~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGa 142 (226)
T d1vcva1 74 SRLAEVADEIDVVAP----------IGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGA 142 (226)
T ss_dssp HHHTTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCeeEEEec----------HHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCc
Confidence 456679999998531 344444577777777778877663 33455433 2 355667778888899999
Q ss_pred CEEEEe-ccCCCC---cCCCCccc---cHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh
Q 023070 105 SLLAVH-GRTRDE---KDGKKFRA---DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 105 ~~I~vh-~rt~~~---~~~~~~~~---~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~ 158 (287)
|+|--+ |..... ....+..+ +...++++.+.. ++-|=++|||+|.+++.++++.
T Consensus 143 dFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 143 HFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp SEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred ceeeecccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 999443 321100 00001122 334454444432 5778999999999999999974
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.49 E-value=0.00015 Score=60.44 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHh-hCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~-~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+-++...+.|+|++.+.+-........ .....++.++.+++ .+++||++-||| +++++.++++ +|+|||.+.++++
T Consensus 126 ~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~-~Ga~giAvis~I~ 203 (226)
T d2tpsa_ 126 SEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQ-AGADGVSMISAIS 203 (226)
T ss_dssp HHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHH-TTCSEEEESHHHH
T ss_pred HHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHH-hCCCEEEEhHHhh
Confidence 345566778999999976544322111 11234566777764 478999999999 7799999988 6999999999999
Q ss_pred hCccc
Q 023070 172 ENPAL 176 (287)
Q Consensus 172 ~nP~l 176 (287)
..++.
T Consensus 204 ~a~dp 208 (226)
T d2tpsa_ 204 QAEDP 208 (226)
T ss_dssp TSSCH
T ss_pred cCCCH
Confidence 76654
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00024 Score=58.21 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=93.4
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
|+..|..+.|.-.+|+++++-|+ .++.||..+-|..|- +.-.+.++++++.+ ++.+.+..
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~------------------~~d~~~i~~ir~~~~d~~l~vDa 64 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN------------------HLISERMVAIRTAVPDATLIVDA 64 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS------------------SCHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC------------------CcHHHHHHHHHHhccccEEEEec
Confidence 45566677888889999998877 567899999997651 11244566777666 57777777
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+.++++.+++.+++.++.+|- +.-. +.|++.++++++ .+||.+..++.++.++.++. ..+|.
T Consensus 65 N~~~s~~~A~~~~~~l~~~~l~~iE-------eP~~---~~d~~~~~~l~~--~~pi~~~E~~~~~~~~~~l~--~~~d~ 130 (208)
T d1jpdx1 65 NESWRAEGLAARCQLLADLGVAMLE-------QPLP---AQDDAALENFIH--PLPICADESCHTRSNLKALK--GRYEM 130 (208)
T ss_dssp TTCCCSTTHHHHHHHHHHTTCCEEE-------CCSC---TTSCGGGGSSCC--SSCEEESTTCSSGGGHHHHB--TTBSE
T ss_pred ccccchhHHHHHHHHHHhccccccC-------ccCC---ccCHHHHHhhhc--ccceecCCCcCCHHHHHHHh--hccCE
Confidence 7789999999999999999988772 1100 223344444443 58999999999999998763 35887
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
+++
T Consensus 131 ~~~ 133 (208)
T d1jpdx1 131 VNI 133 (208)
T ss_dssp EEE
T ss_pred EEe
Confidence 766
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.37 E-value=0.0029 Score=53.12 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++.+|+.+||.|++|+.. ++ .|+|+|.||.++|..|+.-..+
T Consensus 208 ~~i~IsESGI~~~~dv~~-l~-~g~davLIGesLm~~~d~~~~l 249 (254)
T d1vc4a_ 208 GGVLVAESGYSRKEELKA-LE-GLFDAVLIGTSLMRAPDLEAAL 249 (254)
T ss_dssp CSEEEEESCCCSHHHHHT-TT-TTCSEEEECHHHHTSSCHHHHH
T ss_pred CCEEEEccCCCCHHHHHH-HH-cCCCEEEEChhhcCCCCHHHHH
Confidence 578999999999999865 56 5999999999999888855433
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.33 E-value=0.00074 Score=55.86 Aligned_cols=152 Identities=16% Similarity=0.243 Sum_probs=94.7
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEE--EEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~I--diN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
-++++|...|...+.+..+.+ +.|+|.| ||-=|--++|. .+| .++++.+++.+++|+.+-+-.
T Consensus 4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~---t~~----------~~~~~~i~~~t~~~~dvHLMv- 69 (221)
T d1tqja_ 4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI---TIG----------PLIVDAIRPLTKKTLDVHLMI- 69 (221)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB---CBC----------HHHHHHHGGGCCSEEEEEEES-
T ss_pred EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc---ccC----------cHhHHhhhhccCcceeeeEEE-
Confidence 467899999999999988876 4578864 44433222211 122 246677777777777766533
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCC----------------------------C-----------------cCCCC
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------------------------E-----------------KDGKK 121 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~----------------------------~-----------------~~~~~ 121 (287)
.++..+++.+.++|++.+++|.-+.. . ..++.
T Consensus 70 ---~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG~~ 146 (221)
T d1tqja_ 70 ---VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFG 146 (221)
T ss_dssp ---SSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC---
T ss_pred ---eCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCCCC
Confidence 23334555666777777777642110 0 00111
Q ss_pred c----cccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 122 F----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 122 ~----~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
| +.-++.++++++. .++.|.+-|||+. +.+..+.+ .|||.+++|++++.+++.-..+
T Consensus 147 GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~-~Gad~~V~GS~if~~~d~~~~i 212 (221)
T d1tqja_ 147 GQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLE-AGANAIVAGSAVFNAPNYAEAI 212 (221)
T ss_dssp -CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHH-HTCCEEEESHHHHTSSCHHHHH
T ss_pred CcccchhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHH-cCCCEEEEChHHhCCCCHHHHH
Confidence 1 1224556555442 4688999999975 67887887 6999999999999888755443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=97.29 E-value=0.0025 Score=52.52 Aligned_cols=148 Identities=8% Similarity=0.110 Sum_probs=96.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
.+.|+-+.+...+|+.+... .++.|++.|-+|.-+ ......++++.+++. +.-+.+-+...
T Consensus 58 ~~~~~dvHLMv~~p~~~i~~--~~~~g~~~I~~H~E~----------------~~~~~~~~i~~i~~~-g~~~Glal~p~ 118 (220)
T d1h1ya_ 58 TKAYLDCHLMVTNPSDYVEP--LAKAGASGFTFHIEV----------------SRDNWQELIQSIKAK-GMRPGVSLRPG 118 (220)
T ss_dssp CCSEEEEEEESSCGGGGHHH--HHHHTCSEEEEEGGG----------------CTTTHHHHHHHHHHT-TCEEEEEECTT
T ss_pred cchhhhhHHHhcchhhhhHH--hhhcccceeeecccc----------------cchhHHHHHHHHHHc-CCCcceeeccc
Confidence 35678889999999987544 456688999999631 111234556665443 45555566565
Q ss_pred CChhhHHHHHHHHHHc-CCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~-G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
.+.+....+. ... -++.+.+.............+.-++.++++++. .+++|.+-|||+. +.+..+.+ .|||.+
T Consensus 119 t~~~~~~~~l---~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~~-aGad~~ 193 (220)
T d1h1ya_ 119 TPVEEVFPLV---EAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAAS-AGANCI 193 (220)
T ss_dssp SCGGGGHHHH---HSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHH-HTCCEE
T ss_pred cchhHHHHHH---hcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHHH-CCCCEE
Confidence 5544443332 232 378887765433221111113457778888775 4699999999975 78887777 699999
Q ss_pred EEehhhhhCccchh
Q 023070 165 LSAESLLENPALFA 178 (287)
Q Consensus 165 miGR~~l~nP~lf~ 178 (287)
++|++++.+++.-.
T Consensus 194 V~GS~if~~~d~~~ 207 (220)
T d1h1ya_ 194 VAGSSIFGAAEPGE 207 (220)
T ss_dssp EESHHHHTSSCHHH
T ss_pred EECHHHHCCCCHHH
Confidence 99999988877544
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00049 Score=55.49 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=83.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChh
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQ 90 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~ 90 (287)
++.+=-.+.++..+.++.+..+.|.+++++ |.. .+ +| + ++++.+++.. ++++....-.... .
T Consensus 5 ~vAlD~~~~~~~~~~~~~~~~~vdiikig~--~~~--~~--~G------~----~~i~~l~~~~~~~~i~~d~k~~d~-~ 67 (213)
T d1q6oa_ 5 QVALDNQTMDSAYETTRLIAEEVDIIEVGT--ILC--VG--EG------V----RAVRDLKALYPHKIVLADAKIADA-G 67 (213)
T ss_dssp EEEECCSSHHHHHHHHHHHGGGCSEEEECH--HHH--HH--HC------T----HHHHHHHHHCTTSEEEEEEEECSC-H
T ss_pred EEEecCCCHHHHHHHHHhcCCCccEEEeCe--ecc--cc--CC------H----HHHHHHHHhcccccceeEEeeccc-h
Confidence 344434567777777777777899999984 221 11 22 2 3444555433 5565543323222 2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------------cCC-C
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------------KDG-K 120 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------------~~~-~ 120 (287)
..+++.+.++|+|.++||+..... ... .
T Consensus 68 --~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 145 (213)
T d1q6oa_ 68 --KILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVA 145 (213)
T ss_dssp --HHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCC
T ss_pred --HHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCee
Confidence 234566778899999998631100 000 0
Q ss_pred CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 121 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 121 ~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.....++.+++.+. .++++...||++ ++++.++++ .|+|.+++||+++...+
T Consensus 146 ~~~~~l~~i~~~~~-~~~~i~~~gGi~-~~~~~~~~~-~Gad~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 146 WGEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKG-IPIHVFIAGRSIRDAAS 197 (213)
T ss_dssp CCHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTT-SCCSEEEESHHHHTSSC
T ss_pred CCHHHHHHHHHhhc-cCceEecCCCcC-cCCHHHHHH-cCCCEEEEChhhcCCCC
Confidence 00112333333332 468888888885 788888887 59999999999876433
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.002 Score=55.87 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHH-HcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARR-VEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~-~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+.+++-|+. .+. ||..+.|..| . ..++.-.+.++++++.+ +..+.+...-+|+.+++++
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG------------~---~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~ 110 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGG------------V---LAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIK 110 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECS------------S---SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECC------------C---CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHH
Confidence 378988888874 455 9999998754 1 23455567777887776 5778888888899999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+++.++ .++.++ ++.- ........+.++++++.+++||.++-.+.+..++.++++...+|.++.
T Consensus 111 ~~~~le-~~l~w~-------EEPv~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 175 (309)
T d1jdfa1 111 IGKYLK-GSLAYA-------EDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLA 175 (309)
T ss_dssp HHHHTT-TTCSCE-------ESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred HHHHHh-hcchhh-------hhhcccCcchhhHHHHHHhhcccccceecCcccchhhhhhhhhhhccceeeec
Confidence 999885 567665 1110 000012357788999999999999999999999999999877886654
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=0.0062 Score=53.18 Aligned_cols=115 Identities=17% Similarity=0.296 Sum_probs=81.3
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~ 131 (287)
-|+.++++.+++.++- .++.||.+|-..+.+.++....++.+...|-.-|.+.-|.......+. ...|+..+..
T Consensus 183 I~A~~~~n~~LL~~~g-----~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~ 257 (338)
T d1vr6a1 183 IGARNAQNFRLLSKAG-----SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPI 257 (338)
T ss_dssp ECGGGTTCHHHHHHHH-----TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHH
T ss_pred echhhccCHHHHHHhh-----ccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccce
Confidence 4788899988766543 258999999777778899999999999999988888655432211221 1358888888
Q ss_pred HHhhCCCcEEEe----cCCCCH--HHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 132 VKNALRIPVLAN----GNVRHM--EDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 132 i~~~~~ipVi~n----GgI~s~--~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+++....|||+. ||-+.. .-++.++. .||||+|+=. --||.
T Consensus 258 ~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA-~GadGl~iE~--Hp~P~ 304 (338)
T d1vr6a1 258 IRKESHLPILVDPSHSGGRRDLVIPLSRAAIA-VGAHGIIVEV--HPEPE 304 (338)
T ss_dssp HHHHBSSCEEECHHHHHCSGGGHHHHHHHHHH-HTCSEEEEEB--CSCGG
T ss_pred eeccccCceeeCCCCCCCchhHHHHHHHHHHH-hCCCEEEEEe--CCCcc
Confidence 888889999963 554433 23445555 6999999963 34554
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.03 E-value=0.0088 Score=48.26 Aligned_cols=141 Identities=13% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
-.+.++..+.++.+..+.++|+++. |.- . .+| + +.++.+++..+.+|...+.+..-.......+
T Consensus 8 ~~~~~~a~~~~~~l~~~v~~iKvG~--~l~--~--~~G------~----~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~ 71 (206)
T d2czda1 8 VYEGERAIKIAKSVKDYISMIKVNW--PLI--L--GSG------V----DIIRRLKEETGVEIIADLKLADIPNTNRLIA 71 (206)
T ss_dssp CCSHHHHHHHHHHHGGGCSEEEEEH--HHH--H--HHC------T----THHHHHHHHHCCEEEEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCcccEEEECH--HHH--h--hcC------H----HHHHHHHHhcCCeEEEEeeeeeecccchhee
Confidence 3466666677776777889999984 221 1 122 2 2345555555788776655543222334567
Q ss_pred HHHHHcCCCEEEEeccCCCCc---------------CCCC---------------------------ccccHHHHHHHHh
Q 023070 97 KMLEDAGCSLLAVHGRTRDEK---------------DGKK---------------------------FRADWNAIKAVKN 134 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~---------------~~~~---------------------------~~~~~~~i~~i~~ 134 (287)
+.+.++|++++|||+...... .... +....+.+..+++
T Consensus 72 ~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~ 151 (206)
T d2czda1 72 RKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRD 151 (206)
T ss_dssp HHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHHHHHH
T ss_pred hhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHHHHHHHHHHHhcccccccccccCchhhhhhhh
Confidence 888899999999996421000 0000 0012233555555
Q ss_pred hCC--CcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 135 ALR--IPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 135 ~~~--ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..+ +.+ ..+||.. ..+..++++ .|+|.+++||+++.-++
T Consensus 152 ~~~~~~~i-~~pGI~~~~~~~~~ai~-~Gad~iVvGR~I~~a~d 193 (206)
T d2czda1 152 RLKEGIKI-LAPGIGAQGGKAKDAVK-AGADYIIVGRAIYNAPN 193 (206)
T ss_dssp HSCTTCEE-EECCCCSSTTHHHHHHH-HTCSEEEECHHHHTSSS
T ss_pred hhcccceE-ECCCccccCCCHHHHHH-hCCCEEEEChhhccCCC
Confidence 442 333 4455532 245666776 59999999999987554
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.01 E-value=0.0015 Score=53.79 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=37.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 136 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 136 ~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.++||++.|||.+.+++..+++ .|+|||.+|++.+.-+++.+-+
T Consensus 174 ~~v~vlygGsV~~~n~~~~~~~-~g~dGvLVGsAsl~a~d~~~~~ 217 (224)
T d1hg3a_ 174 PEVKVLCGAGISTGEDVKKAIE-LGTVGVLLASGVTKAKDPEKAI 217 (224)
T ss_dssp TTSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTCSSHHHHH
T ss_pred cccceEEeCCcCCHHHHHHHHh-CCCCEEEEcceeecCcCHHHHH
Confidence 3699999999999999999888 5999999999999776665544
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.0084 Score=50.06 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+++.+.++++... ..+.-+-|-+. +..++-+.+...|++.|-|-.|..... ..|.+...++...+ +
T Consensus 135 ~~~~l~~l~~~a~-~lgle~LvEvh------~~~El~~al~~~~a~iiGINnRdL~t~-----~vd~~~~~~L~~~ip~~ 202 (251)
T d1i4na_ 135 TAEQIKEIYEAAE-ELGMDSLVEVH------SREDLEKVFSVIRPKIIGINTRDLDTF-----EIKKNVLWELLPLVPDD 202 (251)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEEEC------SHHHHHHHHTTCCCSEEEEECBCTTTC-----CBCTTHHHHHGGGSCTT
T ss_pred cHHHHHHHHHHHH-HhCCeeecccC------CHHHHHHHhcccccceeeeeecchhcc-----chhhhHHHHHHhhCCCC
Confidence 3455667766543 44666666642 223434445567899999988866432 35566666776665 5
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
..+|+.+||.+++|+.. +. .|+|+|.||.++|..++.-
T Consensus 203 ~~~IaESGI~~~~d~~~-l~-~G~davLIG~sLm~~~~p~ 240 (251)
T d1i4na_ 203 TVVVAESGIKDPRELKD-LR-GKVNAVLVGTSIMKAENPR 240 (251)
T ss_dssp SEEEEESCCCCGGGHHH-HT-TTCSEEEECHHHHHCSSHH
T ss_pred CEEEEcCCCCCHHHHHH-HH-hCCCEEEEChHHhCCCCHH
Confidence 78999999999999975 55 5999999999999877643
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=96.97 E-value=0.0011 Score=55.96 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHH---HHHhhcc-CCcEEEEecCC-CChhhHHHHHH
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV---EKLALNL-NVPVSCKIRVF-PNLQDTIKYAK 97 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv---~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~ 97 (287)
..++...++.|+|.||+=+. +|..+-.+.+.+.+.+ ..+++.. +.++-|=+-.+ .+.++.+..+.
T Consensus 88 ~~Ea~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~e~i~~~~ 157 (256)
T d2a4aa1 88 LNDTEKALDDGADEIDLVIN----------YKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTT 157 (256)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEecc----------HHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcHHHHHHHH
Confidence 33444467889999998532 3333334455555554 4444443 34433333222 22334444444
Q ss_pred -HHHHcCCCEEE-EeccCCCCcCCCCccccHHHHHHHH-h--------hCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 98 -MLEDAGCSLLA-VHGRTRDEKDGKKFRADWNAIKAVK-N--------ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 98 -~l~~~G~~~I~-vh~rt~~~~~~~~~~~~~~~i~~i~-~--------~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++|+|+|- -+|.... +..+.+...+.++. + .-++.|=++|||+|++++.+++.. |++.+
T Consensus 158 ~~~~~aGadFVKTSTG~~~~----gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~-g~~~l-- 230 (256)
T d2a4aa1 158 LAVLNGNADFIKTSTGKVQI----NATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILL-ARRFL-- 230 (256)
T ss_dssp HHHHTTTCSEEECCCSCSSC----CCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHH-HHHHT--
T ss_pred HHHHhcccHHHHhccCCCCC----CCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHH-HHHhc--
Confidence 45689999993 3333211 11123333333322 1 136789999999999999999984 66654
Q ss_pred ehhhhhCccchh
Q 023070 167 AESLLENPALFA 178 (287)
Q Consensus 167 GR~~l~nP~lf~ 178 (287)
|-..+ +|..|+
T Consensus 231 G~~~~-~~~~fR 241 (256)
T d2a4aa1 231 SSLAC-HPDNFR 241 (256)
T ss_dssp C-------CCEE
T ss_pred ccccc-cCCcee
Confidence 32222 666554
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.93 E-value=0.0014 Score=54.28 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=41.5
Q ss_pred HHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 130 KAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 130 ~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+++. .++||++.|||.+.+++..+++ .|+|||.||++.+.-++.|..+.
T Consensus 165 ~~~~~~~~~i~vlygGgV~~~n~~~~~~~-~g~dGvLVGsA~l~a~d~~~~i~ 216 (226)
T d1w0ma_ 165 GLVSRHFPEVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDPYAKIV 216 (226)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHHHHHH
T ss_pred hhhhccCCCceEEEecCcCChHHHHHHhc-CCCCEEEechheecCCCHHHHHH
Confidence 334443 4799999999999999998887 59999999999998777776553
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.93 E-value=0.0027 Score=52.52 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=39.3
Q ss_pred HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 126 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 126 ~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+.+..+++.. ++||++.+||+|++++.++.+ +||||.+|.++..++.
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~--~ADgVVVGSAiv~~ie 217 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE--HADVIVVGNAVYEDFD 217 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT--TCSEEEECTHHHHCHH
T ss_pred chhHHHHHhhccCcceEEEcccCCHHHHHHHHc--CCCEEEECHHHHhhHH
Confidence 45566666654 599999999999999998763 7999999999877654
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.88 E-value=0.0092 Score=48.45 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=55.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 90 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~ 90 (287)
+++-+=-.+.++..+.++.+..+.+.|++++ |.- .+ +| + +.++++++..+.+|...+.+..-..
T Consensus 5 i~lAlD~~~~~~a~~l~~~~~~~v~~iKig~--~l~--~~--~G------~----~~v~~l~~~~~~~i~~D~K~~DIg~ 68 (212)
T d1km4a_ 5 LILAMDLMNRDDALRVTGEVREYIDTVKIGY--PLV--LS--EG------M----DIIAEFRKRFGCRIIADFAVADIPE 68 (212)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTTCSEEEEEH--HHH--HH--HC------T----HHHHHHHHHHCCEEEEEEEECSCHH
T ss_pred eEEEecCCCHHHHHHHHHHhCCCCcEEEECH--HHH--Hh--cC------H----HHHHHHHHhcccceehhhhhhcccc
Confidence 5555555677777777777777889999984 211 11 23 2 2445556666777776554543333
Q ss_pred hHHHHHHHHHHcCCCEEEEecc
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGR 112 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~r 112 (287)
.....++.+.++|+|++|||+.
T Consensus 69 t~~~~~~~~~~~gad~~TVh~~ 90 (212)
T d1km4a_ 69 TNEKICRATFKAGADAIIVHGF 90 (212)
T ss_dssp HHHHHHHHHHHTTCSEEEEEST
T ss_pred HHHHhHhhhccccccEEEEecc
Confidence 3346677888999999999974
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.82 E-value=0.01 Score=49.66 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=95.8
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHc----CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--Cc
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VP 78 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~----~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~p 78 (287)
+...|+-.|.+++..+.-..+.. .++ .++..+..++| ..|..+...++.+.+.|++++...+ +.
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG---------~~g~~~~e~~~~~~~rI~~~r~~~G~~~~ 74 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLG---------FKGEKLREYVRWLSDRILSLRSSPRYHPT 74 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCC---------TTSHHHHHHHHHHHHHHHHHCSSTTCCCE
T ss_pred CCCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhC---------CCCCCcHHHHHHHHHHHHHHHhCcCCCcc
Confidence 45678999999998875444432 111 12344444433 2234444456666677777777765 44
Q ss_pred EEEEecC------CCChhhHHHHHHHHHHcCCCEE-EEeccCCCCcC-CCCccccHHHHHHHHhh-----CCCcEEEecC
Q 023070 79 VSCKIRV------FPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKD-GKKFRADWNAIKAVKNA-----LRIPVLANGN 145 (287)
Q Consensus 79 v~vKiR~------g~~~~~~~~~a~~l~~~G~~~I-~vh~rt~~~~~-~~~~~~~~~~i~~i~~~-----~~ipVi~nGg 145 (287)
+.+.+.. +|+.+++.++.+.+.+.+.++- -+ ++.- ....+.||+.++++++. .++||.+.=.
T Consensus 75 i~iD~~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~ 149 (251)
T d1kkoa1 75 LHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEW 149 (251)
T ss_dssp EEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTT
T ss_pred eeeccccccccccCCCHHHHHHHHHHHHHhcCCCceee-----cCCcccccchHHHHHHHHHHHHHhccCCCceEeccce
Confidence 4444322 6888899999999998876652 22 1111 11113567777777654 4699999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEe
Q 023070 146 VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiG 167 (287)
+.|++++.++++...||.|.+=
T Consensus 150 ~~t~~d~~~~i~~~a~d~v~iK 171 (251)
T d1kkoa1 150 CNTYQDIVDFTDAGSCHMVQIK 171 (251)
T ss_dssp CCSHHHHHHHHHTTCCSEEEEC
T ss_pred eCCHHHHHHHHHhCCccceecc
Confidence 9999999999998889999884
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.78 E-value=0.014 Score=47.82 Aligned_cols=113 Identities=10% Similarity=0.119 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+.....+.++.+++. +.-+.+-+....+.+.... .+....+|.+.+.+.........-.+.-++-++++++.. ++
T Consensus 96 ~~~~~~~~i~~i~~~-g~~~Gial~p~t~~~~~~~---~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~ 171 (221)
T d1tqxa_ 96 DTERCIQLAKEIRDN-NLWCGISIKPKTDVQKLVP---ILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNL 171 (221)
T ss_dssp CHHHHHHHHHHHHTT-TCEEEEEECTTSCGGGGHH---HHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTC
T ss_pred ccchhhHHHHHHHhc-CCeEEEeeccccccccchh---hcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCc
Confidence 344455666666543 5556666555544443322 233456899977655432111111235577788888764 68
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
.|.+-|||+ .+.+..+.+ .|||.+++|++++.+++.-.
T Consensus 172 ~I~VDGGIn-~~~i~~l~~-aGad~iV~GS~if~~~d~~~ 209 (221)
T d1tqxa_ 172 NIQVDGGLN-IETTEISAS-HGANIIVAGTSIFNAEDPKY 209 (221)
T ss_dssp EEEEESSCC-HHHHHHHHH-HTCCEEEESHHHHTCSSHHH
T ss_pred ceEEEcccC-HHhHHHHHH-cCCCEEEEChHHHCCCCHHH
Confidence 899999996 478888887 69999999999988776543
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=96.77 E-value=0.02 Score=48.34 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=82.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=+|- ..|-...-..+.-.++++.+.+.+ ++||.+-+. +.+..+++++
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G----------~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~i~~ 90 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG-SNNTHASIDL 90 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECe----------EccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC-cccHHHHHHH
Confidence 6778888777 5678999999973 233333334555555666665544 578888753 2456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE-e-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~-n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|++++.+..-.... .+...-+++++.+.+++++||+. | |.--+++.+.++.+
T Consensus 91 a~~a~~~Gad~ilv~pP~~~~---~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 91 TKKATEVGVDAVMLVAPYYNK---PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp HHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc
Confidence 999999999999887432211 11122356778888888999874 2 44467777776654
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.033 Score=45.61 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=57.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|++|-|=-.+.+++.+.++.+....++|.++. |.- ...-.++++.+++ .+.+|...+-+..
T Consensus 3 ~~~iivALD~~~~~eal~i~~~l~~~i~~iKiG~--~l~--------------~~~G~~~i~~l~~-~~~~if~D~K~~D 65 (231)
T d1eixa_ 3 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGK--EMF--------------TLFGPQFVRELQQ-RGFDIFLDLKFHD 65 (231)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEH--HHH--------------HHHHHHHHHHHHH-TTCCEEEEEEECS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCcceEEEECH--HHH--------------hhcCHHHHHHHHh-cCchhhHhhHhhc
Confidence 5789888866677777776666666688999862 221 0111345566655 4667766555544
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR 112 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r 112 (287)
-.......++.+.+.|++++|||+-
T Consensus 66 I~nt~~~~~~~~~~~~~~~~tvh~~ 90 (231)
T d1eixa_ 66 IPNTAAHAVAAAADLGVWMVNVHAS 90 (231)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred CcHHHHHHHHhhhcccceEEEEecc
Confidence 3334445677888899999999964
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.0068 Score=49.05 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=85.3
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~ 91 (287)
+.|||- ++++...|+ +.|+|.+=+.| .|... | .=+++.+.++.+.+.... ..|-+-...+
T Consensus 4 IKICGit~~~da~~~~---~~gad~iGfI~-~~~Sp-R--------~Vs~~~a~~i~~~~~~~~---~~V~V~v~~~--- 64 (205)
T d1nsja_ 4 VKICGITNLEDALFSV---ESGADAVGFVF-YPKSK-R--------YISPEDARRISVELPPFV---FRVGVFVNEE--- 64 (205)
T ss_dssp EEECCCCSHHHHHHHH---HHTCSEEEEEC-CTTCT-T--------BCCHHHHHHHHHHSCSSS---EEEEEESSCC---
T ss_pred EEEcCCCcHHHHHHHH---hCCCCEEeEec-cCCCC-C--------ccCHHHHHHHHhhhcccc---eeeccccccH---
Confidence 578884 556544443 35889999887 44310 0 124667777776654322 2222222222
Q ss_pred HHHHHHHHHHcCCCEEEEeccCC-----------------------------------------CCcCCCCc-cccHHHH
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTR-----------------------------------------DEKDGKKF-RADWNAI 129 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~-----------------------------------------~~~~~~~~-~~~~~~i 129 (287)
..++.+.+...+.+.+.+||... ....+++| ..||+.+
T Consensus 65 ~~~i~~~~~~~~~~~vQlhg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~ 144 (205)
T d1nsja_ 65 PEKILDVASYVQLNAVQLHGEEPIELCRKIAERILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLI 144 (205)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHTTSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGT
T ss_pred HHHHHhhhhhccccchhccchhhHHHHhhcccceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCCcccchhhc
Confidence 33444555677888888886311 00111222 4689887
Q ss_pred HHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 130 ~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+.+... ..|++..||| +++.+.++++..+++||=+.+|+=..|
T Consensus 145 ~~~~~~-~~~~~LAGGl-~~~Nv~~ai~~~~p~gvDvsSgvE~~~ 187 (205)
T d1nsja_ 145 LPYRDR-FRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFP 187 (205)
T ss_dssp GGGGGG-SSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEET
T ss_pred ccchhc-ccceeeecCC-CHHHHHHHHHHhCCCEEEEcCcccCCC
Confidence 776554 3589999999 569999999878899999888774434
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.66 E-value=0.0043 Score=51.23 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=37.5
Q ss_pred cHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 125 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 125 ~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+.+..+++.+ ++||+..+||+|++++.++.+ +||||.+|.++..
T Consensus 174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~--~ADgvIVGSaive 220 (231)
T d2f6ua1 174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVGNVIYE 220 (231)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEECHHHHH
T ss_pred hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh--cCCEEEEChHHhc
Confidence 345566666654 699999999999999998775 5999999999864
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.017 Score=49.11 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=94.0
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHH-c-CCCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHHH
Q 023070 8 DRPLFVQFCAN-----DPEILLNAARRV-E-PYCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 8 ~~p~~~Qi~g~-----~~~~~~~aA~~~-~-~g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
..|+|+|+..+ ..+.+...++.+ + ..+. |-||+ .|.. ....+.||.|-+.+ +.+..+++
T Consensus 41 ~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vp-V~lHlDH~~~~e~i~~ai~~GftSVMiD~S~lp~eeNi~~t~~v 119 (284)
T d1gvfa_ 41 RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMP-LALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSV 119 (284)
T ss_dssp TCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSC-BEEEEEEECCHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEcCHhHHhhCCHHHHHHHHHHHHHhcCCe-EEeeeccccchHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHH
Confidence 57999999764 334555555533 3 2443 44553 1221 12234455544432 33344555
Q ss_pred HHHHhhccCCcEEEEecC-CC------------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh
Q 023070 68 VEKLALNLNVPVSCKIRV-FP------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 134 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g~------------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~ 134 (287)
++.... .+++|-.-+.. +. ...++.+..+-+++.|+|.+.|.=+|.-+.+..+...|++.++++++
T Consensus 120 v~~ah~-~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~ 198 (284)
T d1gvfa_ 120 VDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIRE 198 (284)
T ss_dssp HHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHH
T ss_pred HHHHHh-hccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhc
Confidence 554432 35565554432 10 01233444445568999999886555444333333578999999999
Q ss_pred hCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 135 ALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 135 ~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
.+++|++.-||=..+ +++.++++ .|+--|=|++.+-
T Consensus 199 ~~~vPLVlHGgSG~~~e~i~~ai~-~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 199 VVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATELK 235 (284)
T ss_dssp HCCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHHH
T ss_pred cccCCeEeeCCCCCCHHHHHHHHH-cCeEEEEechHHH
Confidence 999999988865444 55666676 6999999988764
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.57 E-value=0.031 Score=47.36 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=82.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++. ..|-...-..+.-.++++.+.+.+ .+|+.+-+- +.+.++++++
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~-~~s~~~~i~~ 94 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIRL 94 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHHHHHHHHhccccceEeccc-cchhHHHHHH
Confidence 6778888777 5678999998872 123222223333355656555444 478876642 3467889999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE-----ecC-CCCHHHHHHHHHhcCc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----NGN-VRHMEDVQKCLEETGC 161 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~-----nGg-I~s~~da~~~l~~~ga 161 (287)
++.+++.|++++.+..-.... .+...-+++++++.+++++||+. .+| ..+++.+.++.+...+
T Consensus 95 a~~a~~~Gad~v~i~~P~~~~---~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~~p~i 163 (296)
T d1xxxa1 95 AKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNI 163 (296)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTE
T ss_pred HHHHHHhcCCeEEEEeccCCC---CCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcCCCCe
Confidence 999999999999887543321 11112346778888888999875 234 4577777666543333
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.03 Score=47.29 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=83.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-..+.=.++++.+.+.. .+||.+-+.. .+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~st~~ai~~ 88 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLG----------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKL 88 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHhhhhccccccCCceEeeccc-ccHHHHHHH
Confidence 6777888777 5678999998862 223322223333355666655544 5888887532 456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE------ecCCCCHHHHHHHHHh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA------NGNVRHMEDVQKCLEE 158 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~------nGgI~s~~da~~~l~~ 158 (287)
++.+++.|+|++.+.+..... .+...-+++.+.+.+++++||+. .|.-.+++.+.++++.
T Consensus 89 a~~A~~~Gad~v~v~pP~y~~---~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 89 VKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp HHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 999999999999997653221 11122356778888888898764 2556688888877753
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.52 E-value=0.065 Score=45.11 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=88.2
Q ss_pred CCCCEEEEecC--CCHHHHHHHHHH-HcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEE
Q 023070 7 EDRPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 80 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~aA~~-~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~ 80 (287)
.+.|+++=+=. .+|....+.++. .+.|+.+|.|-=. .|.+....++-...+....+.+.++..++.... ++-|.
T Consensus 75 ~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ 154 (275)
T d1s2wa_ 75 SDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIV 154 (275)
T ss_dssp CSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEE
T ss_pred cCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEE
Confidence 35788876632 378888888884 5679999999842 333221111111123333344445554444333 44455
Q ss_pred EEecC---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh--hCCCcEEEecC---CCCHHHH
Q 023070 81 CKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLANGN---VRHMEDV 152 (287)
Q Consensus 81 vKiR~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipVi~nGg---I~s~~da 152 (287)
.+.-. +...+++++=++.+.++|+|.+-+++.+.. . +.+..+.. ..++|+.+|.+ -.+.
T Consensus 155 ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~~~--------~--~~~~~~~~~~~~~~pl~~~~~~~~~~~~--- 221 (275)
T d1s2wa_ 155 ARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKAD--------P--SDIEAFMKAWNNQGPVVIVPTKYYKTPT--- 221 (275)
T ss_dssp EEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSS--------S--HHHHHHHHHHTTCSCEEECCSTTTTSCH---
T ss_pred ecchhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccCc--------H--HHHHHHHHhhcCCCCEEEecccccccHH---
Confidence 55532 345788999999999999999999877432 1 22333322 35788888753 3333
Q ss_pred HHHHHhcCccEEEEehhhh
Q 023070 153 QKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l 171 (287)
.++- +.|+..|..|-.++
T Consensus 222 ~eL~-~lGv~~v~~g~~~~ 239 (275)
T d1s2wa_ 222 DHFR-DMGVSMVIWANHNL 239 (275)
T ss_dssp HHHH-HHTCCEEEECSHHH
T ss_pred HHHH-HcCCCEEEEchHHH
Confidence 3333 46999999875543
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.50 E-value=0.01 Score=49.78 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHc----CCCCEEEEeccCChhhhhcCcccccccCChHHHH---HHHHHHhhccC--
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVE----PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK---SLVEKLALNLN-- 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~----~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~---~iv~~v~~~~~-- 76 (287)
...|+-.|.++..+....++.. .++ .++..+.+.+| .....+.+.+. +-|++++...+
T Consensus 5 ~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G------------~~~~~~~e~~~~i~~rI~~~r~~~g~~ 72 (253)
T d1kcza1 5 NAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLG------------LKGEKLLEYVKWLRDRIIKLRVREDYA 72 (253)
T ss_dssp CCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCC------------TTSHHHHHHHHHHHHHHHHHCSSTTCC
T ss_pred CCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcC------------CCccccHHHHHHHHHHHHHHhcccccC
Confidence 4568999999888776655543 232 34665655544 32333444444 44445555553
Q ss_pred CcEEEEe------cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHhh-----CCCcEEEec
Q 023070 77 VPVSCKI------RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNA-----LRIPVLANG 144 (287)
Q Consensus 77 ~pv~vKi------R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~~-----~~ipVi~nG 144 (287)
+.+.+.. ..+|+.++++++++.+++.+..+-.. .++.-.. ..+.+++.++++++. .++||++.=
T Consensus 73 ~~l~iD~~~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~----iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE 148 (253)
T d1kcza1 73 PIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLR----IEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADE 148 (253)
T ss_dssp CEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEE----EECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECT
T ss_pred ceeeehhhhccCccCCCCHHHHHHHHHHHHHhcCCCCce----EecCCCCccHhhHHHHHHHHHHHHhccCCccceeccc
Confidence 3344442 23689999999999999887765211 1211110 001223556666654 468999988
Q ss_pred CCCCHHHHHHHHHhcCccEEEE
Q 023070 145 NVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 145 gI~s~~da~~~l~~~gad~Vmi 166 (287)
.++|++|+.++++...||.|.+
T Consensus 149 ~~~~~~d~~~~i~~~a~d~v~i 170 (253)
T d1kcza1 149 WCNTVEDVKFFTDNKAGHMVQI 170 (253)
T ss_dssp TCCSHHHHHHHHHTTCSSEEEE
T ss_pred cccCHHHHHHHHHhCCcCeeec
Confidence 9999999999999878999987
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=96.44 E-value=0.018 Score=49.04 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=59.3
Q ss_pred ccCCcEEEEecC-----CC--C-hhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhCCCc-EEEe
Q 023070 74 NLNVPVSCKIRV-----FP--N-LQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIP-VLAN 143 (287)
Q Consensus 74 ~~~~pv~vKiR~-----g~--~-~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-Vi~n 143 (287)
..++|+.+=+=. .. + .+.....++.+.+.|+|.+-+- ..... .....++....++.....+| |+.+
T Consensus 151 ~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~~~~----~~~~~~~~~~~~~~~~~~~p~vvLs 226 (291)
T d1to3a_ 151 SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGK----GARSDLLTASQRLNGHINMPWVILS 226 (291)
T ss_dssp TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGC----SCHHHHHHHHHHHHHTCCSCEEECC
T ss_pred HcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCCCch----hhhHHHHHHHHHHhhcCCCcEEEEe
Confidence 458898775422 11 1 2234567888889999988663 11111 00012234455666677899 6677
Q ss_pred cCCCCHHHHHHHHH---hcCccEEEEehhhhhCcc
Q 023070 144 GNVRHMEDVQKCLE---ETGCEGVLSAESLLENPA 175 (287)
Q Consensus 144 GgI~s~~da~~~l~---~~gad~VmiGR~~l~nP~ 175 (287)
||. +.++..+.++ ..||.|+.+||.+..+|-
T Consensus 227 ~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~ 260 (291)
T d1to3a_ 227 SGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSVI 260 (291)
T ss_dssp TTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGGT
T ss_pred CCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCcc
Confidence 776 4455554442 269999999999998873
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.39 E-value=0.055 Score=43.85 Aligned_cols=129 Identities=9% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.+++.=|.+.++++..+.++. ++.|+..|||-+-.|. ..+.++.+++.. ++-|.+-. =
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~------------------a~~~I~~l~~~~p~~~vGaGT--V 73 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEA------------------AADAIRLLRANRPDFLIAAGT--V 73 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTT------------------HHHHHHHHHHHCTTCEEEEES--C
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHhcCCCceEeeee--c
Confidence 467788889999999999985 5679999999875543 134444444332 33333221 0
Q ss_pred CChhhHHHHHHHHHHcCCCEE-----------------------------------------EEeccCCCCcCCCCcccc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLL-----------------------------------------AVHGRTRDEKDGKKFRAD 125 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I-----------------------------------------~vh~rt~~~~~~~~~~~~ 125 (287)
.+ .+-++.+.++|++++ -+.+-.. -.-
T Consensus 74 ~~----~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~--------~gG 141 (212)
T d1vhca_ 74 LT----AEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEA--------SGG 141 (212)
T ss_dssp CS----HHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTT--------TTH
T ss_pred cc----HHHHHHHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccc--------cch
Confidence 11 112333334444433 3321110 002
Q ss_pred HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 126 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 126 ~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+++.++.-. +++++..|||. .+++.+.|+ .|+.++.+|+.+.
T Consensus 142 ~~~lkal~~p~p~~~~~ptGGV~-~~N~~~yl~-~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 142 VKMIKALLGPYAQLQIMPTGGIG-LHNIRDYLA-IPNIVACGGSWFV 186 (212)
T ss_dssp HHHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHT-STTBCCEEECGGG
T ss_pred HHHHHHHhccccCCeEEecCCCC-HHHHHHHHh-CCCEEEEEChhhC
Confidence 46778877654 79999999995 599999998 4888888887654
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.33 E-value=0.094 Score=43.40 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=74.3
Q ss_pred HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-C------CChhhHHHHHHHH
Q 023070 29 RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-F------PNLQDTIKYAKML 99 (287)
Q Consensus 29 ~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-g------~~~~~~~~~a~~l 99 (287)
.+..|+|+|-++ .|+|... +..+.+.+++++.. ..++|+.+=.-. + .+.+.....++.+
T Consensus 99 a~rlGadaV~~~v~~g~~~e~-----------~~l~~~~~v~~e~~-~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria 166 (251)
T d1ojxa_ 99 AVSLGASAVGYTIYPGSGFEW-----------KMFEELARIKRDAV-KFDLPLVVWSYPRGGKVVNETAPEIVAYAARIA 166 (251)
T ss_dssp HHHTTCSEEEEEECTTSTTHH-----------HHHHHHHHHHHHHH-HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHH
T ss_pred HHhchhceEEEEEeCCCCchH-----------HHHHHHHHHHHHHH-HcCCeEEEEEeecCCccccCCCHHHHHHHHHHH
Confidence 345688886665 4544321 12344445555433 348998765533 1 1223344557778
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH-hhCCCcEEEecCC--CCHHHHHHHHHh---cCccEEEEehhhhhC
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-NALRIPVLANGNV--RHMEDVQKCLEE---TGCEGVLSAESLLEN 173 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~-~~~~ipVi~nGgI--~s~~da~~~l~~---~gad~VmiGR~~l~n 173 (287)
.+.|+|.+-+- + +.+.+...++. ....+||+..||= .+.+++.+.++. .||.|+.+||.+...
T Consensus 167 ~ElGaDivK~~---------~--p~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~ 235 (251)
T d1ojxa_ 167 LELGADAMKIK---------Y--TGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 235 (251)
T ss_dssp HHHTCSEEEEC---------C--CSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred HHhCCCEEEec---------C--CCcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCc
Confidence 89999999763 2 22334445444 4567898877774 367766554432 599999999999865
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
|+
T Consensus 236 ~~ 237 (251)
T d1ojxa_ 236 RD 237 (251)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.31 E-value=0.046 Score=46.64 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCccccH----HHHHH
Q 023070 61 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADW----NAIKA 131 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~~~~----~~i~~ 131 (287)
++...+-+..+++.. ..++.+.+..+.+.++..+.++.+++.|+|+|.++--..... .......+. +.++.
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~ 165 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRW 165 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHH
Confidence 455555666665544 567777777788888899999999999999999963222111 011111233 34566
Q ss_pred HHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 132 VKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 132 i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+++.+++||+ ...++.+..++.+.+.+.|+|++.+.-.
T Consensus 166 v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~ 205 (312)
T d1gtea2 166 VRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNT 205 (312)
T ss_dssp HHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCC
T ss_pred HhhccCCceeecccccchhHHHHHHHHHHhcccceEEEee
Confidence 7777899988 4667888888888887789999977543
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.021 Score=48.64 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCCEEEEec---CCCHHHHHHHHHH-HcCCCCEEEEecc-CChhhhhcCcccc-cccCChHHHHHHHHHHhhccC--CcE
Q 023070 8 DRPLFVQFC---ANDPEILLNAARR-VEPYCDYVDINLG-CPQRIARRGNYGA-FLMDNLPLVKSLVEKLALNLN--VPV 79 (287)
Q Consensus 8 ~~p~~~Qi~---g~~~~~~~~aA~~-~~~g~d~IdiN~g-cP~~~~~~~~~G~-~l~~~~~~~~~iv~~v~~~~~--~pv 79 (287)
+.|+++-+= |++|....+.++. .+.|+.+|.|==. -|. +.+.+++ .+....+.+.+|-.++....+ +-|
T Consensus 77 ~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk---~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~I 153 (289)
T d1muma_ 77 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK---RCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVI 153 (289)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCS---STTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEE
T ss_pred CCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCccccc---ccccccccceecHHHHHHHHHHHHHhcCCcchhh
Confidence 567777663 5678899998885 4569999988632 121 1222333 333434444444433332223 444
Q ss_pred EEEecCC--CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHHHH
Q 023070 80 SCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQK 154 (287)
Q Consensus 80 ~vKiR~g--~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da~~ 154 (287)
..++-.. ...+++++=++...++|+|.|-+++. .+.+.++++++.+++|+.+| |+-...-++.+
T Consensus 154 iARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~-----------~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~e 222 (289)
T d1muma_ 154 MARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI-----------TELAMYRQFADAVQVPILANITEFGATPLFTTDE 222 (289)
T ss_dssp EEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC-----------CCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHH
T ss_pred eeccccccccCHHHHHHHHHHhhhcCCcEEEecCC-----------CCHHHHHHHHHhcCCCEEEeecCcCCCccchHHH
Confidence 4454321 23668888888999999999988654 24567888888887887543 44322223444
Q ss_pred HHHhcCccEEEEehhh
Q 023070 155 CLEETGCEGVLSAESL 170 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~ 170 (287)
+-+ .|+..|..+-.+
T Consensus 223 L~~-~Gv~~v~~~~~~ 237 (289)
T d1muma_ 223 LRS-AHVAMALYPLSA 237 (289)
T ss_dssp HHH-TTCSEEEESSHH
T ss_pred HHH-hccceEEechHH
Confidence 444 699999887553
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.20 E-value=0.023 Score=46.15 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=73.4
Q ss_pred HHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
.++++.+.+. ++..=+|. .+.+++..+++.+.+.|+..|-|+-|+. ..++.++.+++..+--+++.|
T Consensus 5 ~~~~~~l~~~---~iipvlr~-~~~~~~~~~~~al~~~Gi~~iEitl~~~---------~a~~~I~~l~~~~p~~~vGaG 71 (212)
T d1vhca_ 5 QQIIEKLREL---KIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRSE---------AAADAIRLLRANRPDFLIAAG 71 (212)
T ss_dssp HHHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHhcCCCceEeee
Confidence 3556666543 23333333 4568899999999999999999997753 336788888876543589999
Q ss_pred CCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 145 NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 145 gI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
-|.|.++++++.+ .||+.++. =-.||.+.+...
T Consensus 72 TV~~~~~~~~a~~-aGa~FivS---P~~~~~v~~~a~ 104 (212)
T d1vhca_ 72 TVLTAEQVVLAKS-SGADFVVT---PGLNPKIVKLCQ 104 (212)
T ss_dssp SCCSHHHHHHHHH-HTCSEEEC---SSCCHHHHHHHH
T ss_pred ecccHHHHHHHHh-hCCcEEEC---CCCCHHHHHHHH
Confidence 9999999999998 59999874 235777766554
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.12 E-value=0.02 Score=46.63 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=65.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|+..|-|+-|+. ..++.|+.+++..+=-+++.|.|.|.+++.++.+ .||+.++.
T Consensus 26 ~~~~~a~~~~~al~~~Gi~~iEitl~~p---------~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~-aGa~Fivs 95 (216)
T d1mxsa_ 26 AREEDILPLADALAAGGIRTLEVTLRSQ---------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEA-AGAQFVVT 95 (216)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEEESSST---------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHH-HTCSSEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHh-CCCCEEEC
Confidence 3578999999999999999999987753 3468889888875435899999999999999998 49998874
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
=-.||.+....+
T Consensus 96 ---P~~~~~v~~~a~ 107 (216)
T d1mxsa_ 96 ---PGITEDILEAGV 107 (216)
T ss_dssp ---SSCCHHHHHHHH
T ss_pred ---CCCcHHHHHHHH
Confidence 225667666443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.034 Score=45.18 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
..|++.=|.+.++++....++. ++.|+..|||-+-.|. ..+.++.+++.. ++-|.+- .
T Consensus 14 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~------------------a~~~I~~l~~~~p~~~vGaG--T 73 (213)
T d1wbha1 14 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTEC------------------AVDAIRAIAKEVPEAIVGAG--T 73 (213)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTT------------------HHHHHHHHHHHCTTSEEEEE--S
T ss_pred hCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHHHCCCCeeecc--c
Confidence 4689988999999999999985 5678999999875553 234444444332 2222222 1
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecc--------------------CCCC-----------cCCCCcc-c-cHHHHHHH
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGR--------------------TRDE-----------KDGKKFR-A-DWNAIKAV 132 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~r--------------------t~~~-----------~~~~~~~-~-~~~~i~~i 132 (287)
=.+ .+-++.+.++|++++.--+- |..+ -.-+|.. . -..+++.+
T Consensus 74 V~~----~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~Gg~~~lkal 149 (213)
T d1wbha1 74 VLN----PQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAI 149 (213)
T ss_dssp CCS----HHHHHHHHHHTCSCEEESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHH
T ss_pred ccc----HHHHHHHHHCCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchhcChHHHHHHh
Confidence 011 11123333444443322000 0000 0011110 1 13677777
Q ss_pred Hhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 133 KNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 133 ~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.- .+++++..|||. .+++.+.++ .|+.++.+|+.+.
T Consensus 150 ~~p~p~~~~~ptGGV~-~~n~~~yl~-~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 150 AGPFSQVRFCPTGGIS-PANYRDYLA-LKSVLCIGGSWLV 187 (213)
T ss_dssp HTTCTTCEEEEBSSCC-TTTHHHHHT-STTBSCEEEGGGS
T ss_pred cCcccCCceeeeCCCC-HHHHHHHHh-CCCEEEEEChhhC
Confidence 765 379999999996 589999998 5898888887555
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.018 Score=46.85 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=70.7
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
-||..=+|. .+.+++..+++.+.+.|+..|-|+-|+. ..++.++.+++..+--+++.|-|.|.++++++.
T Consensus 15 ~~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitl~tp---------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~ 84 (213)
T d1wbha1 15 GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTE---------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVT 84 (213)
T ss_dssp CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCST---------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHH
T ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCeeeccccccHHHHHHHH
Confidence 355544554 4678999999999999999999997753 236889999887543479999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+ .||+.++. =-.||.+.+..+.
T Consensus 85 ~-aGa~FivS---P~~~~~v~~~a~~ 106 (213)
T d1wbha1 85 E-AGAQFAIS---PGLTEPLLKAATE 106 (213)
T ss_dssp H-HTCSCEEE---SSCCHHHHHHHHH
T ss_pred H-CCCcEEEC---CCCCHHHHHHHHh
Confidence 8 59999875 2257777765543
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=95.91 E-value=0.053 Score=43.33 Aligned_cols=140 Identities=18% Similarity=0.113 Sum_probs=81.9
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~ 91 (287)
+.|||- ++++...|+ +.|+|.|=++|-.+++.. =.++.+.++++.+...+ .+|.|= .. .+
T Consensus 3 iKICGit~~ed~~~~~---~~gad~iGfif~~~SpR~----------vs~~~a~~i~~~~~~~~-~~V~Vf--~~---~~ 63 (200)
T d1v5xa_ 3 VKICGITRLEDALLAE---ALGAFALGFVLAPGSRRR----------IAPEAARAIGEALGPFV-VRVGVF--RD---QP 63 (200)
T ss_dssp EEECCCCCHHHHHHHH---HHTCSEEEEECCTTCTTB----------CCHHHHHHHHHHSCSSS-EEEEEE--SS---CC
T ss_pred EEEcCCCcHHHHHHHH---hCCCCEEEEEcCCCCCCC----------cCHHHHHHHHHhhcCce-eeeeee--ee---ch
Confidence 567884 666644443 348899999983222210 14677777777654332 222222 11 22
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCC--------------------------------------CcCCCCccccHHHHHHHH
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRD--------------------------------------EKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~--------------------------------------~~~~~~~~~~~~~i~~i~ 133 (287)
..++.+.+.+.+.+.+.+||.... ...+.....+|++...+.
T Consensus 64 ~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~ 143 (200)
T d1v5xa_ 64 PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLL 143 (200)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGGGHHHH
T ss_pred hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhHHHhhcchhheeecccccCcccccchHHHhhhh
Confidence 334556677888999999874210 000111124555443333
Q ss_pred hhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 134 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
. ...|++..|||. ++.+.+++. .+..||=+.+|.=..|
T Consensus 144 ~-~~~~~~LAGGl~-~~Nv~~~~~-~~p~gvDvsSGvE~~~ 181 (200)
T d1v5xa_ 144 A-TGRRVILAGGIA-PENLEEVLA-LRPYALDLASGVEEAP 181 (200)
T ss_dssp H-TTSCEEECSSCC-STTHHHHHH-HCCSEEEESGGGEEET
T ss_pred h-ccCceEecCCCC-HHHHHHHHh-cCCCEEEEcCceECCC
Confidence 3 357999999996 678888886 6899998887774333
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=95.87 E-value=0.13 Score=43.33 Aligned_cols=139 Identities=13% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCCEEEE--ecc----CChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~-~~~g~d~Idi--N~g----cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++.-+. |-+|+++++++.. +..|.|.|.= |+. ||. .++.+.+.+.+++..+.
T Consensus 16 v~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~------------~eRv~~~~~a~~~a~~~ 83 (283)
T d1ykwa1 16 AHGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSI------------EERAAHLGKARRKAEAE 83 (283)
T ss_dssp CCSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccH------------HHHHHHHHHHHHHHHHH
Confidence 35899988774 7789999999984 5567888853 332 444 24555666666666555
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec----------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG---------- 144 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG---------- 144 (287)
++.....=.++..+.++..+-++.+.+.|++++-|..- ..-|..++.+++.+++||.+--
T Consensus 84 TG~~~lya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~----------~~G~~a~~~l~~~~~lpi~~H~a~~g~~~r~~ 153 (283)
T d1ykwa1 84 TGEPKIYLANITDEVDSLMEKHDVAVRNGANALLINAL----------PVGLSAVRMLSNYTQVPLIGHFPFIASFSRME 153 (283)
T ss_dssp HSSCCEEEEECCCCGGGHHHHHHHHHHHTCCEEEEEHH----------HHCHHHHHHHHHHCSSCEEEECTTTHHHHCST
T ss_pred hCCeeEEeeecCCCHHHHHHHHHHHHHhCCCEEEEecc----------cchHHHHHHHHhhcCCCeEeeeccceeeccCc
Confidence 65444444455556778888899999999998877632 2346778888888899999742
Q ss_pred --CCCCHHHHHHHHHhcCccEEEEe
Q 023070 145 --NVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 145 --gI~s~~da~~~l~~~gad~VmiG 167 (287)
|| |..-..++..-.|+|.+.++
T Consensus 154 ~~Gi-s~~vl~KL~RLaGaD~ih~~ 177 (283)
T d1ykwa1 154 KYGI-HSKVMTKLQRLAGLDAVIMP 177 (283)
T ss_dssp TSEE-CHHHHHHHHHHHTCSEEEEE
T ss_pred CCCc-cHHHHHHHHHHcCCCceeec
Confidence 35 34445677777899999987
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=95.75 E-value=0.15 Score=43.51 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCH----HHHHHHHHH-HcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHHH
Q 023070 7 EDRPLFVQFCANDP----EILLNAARR-VEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~----~~~~~aA~~-~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
...|+|+|+.-+.. ..+...+.. ++. .. -|-||+ .|.. . ...+.+|.|-+.+ +.+..+++
T Consensus 40 ~~sPvIiq~s~~~~~~~~~~~~~~~~~~a~~~~v-pv~lHlDH~~~~e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~v 118 (305)
T d1rvga_ 40 QRSPVILALSEGAMKYGGRALTLMAVELAKEARV-PVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRV 118 (305)
T ss_dssp TTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCSS-CEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HCCCEEEECCccHHhHccHHHHHHHHHHHhccCC-cEEEeehhccChhhhHHHHhcCCceEEEcCccccHHHHHHHHHHH
Confidence 46899999953222 233333332 222 32 355553 2332 2 2234556544432 34455555
Q ss_pred HHHHhhccCCcEEEEecC-C-C-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC--ccccHHHHHHH
Q 023070 68 VEKLALNLNVPVSCKIRV-F-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--FRADWNAIKAV 132 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g-~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~--~~~~~~~i~~i 132 (287)
++.... .+++|-.=+.. | . + ..++.+..+.+++.|+|.+.+.=++.-+.+..+ ...|++.++++
T Consensus 119 v~~Ah~-~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I 197 (305)
T d1rvga_ 119 VEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERI 197 (305)
T ss_dssp HHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHH
T ss_pred HHHhch-hceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccchHHHHHHH
Confidence 555442 35666555432 1 0 0 113334334456899999988544443333222 23789999999
Q ss_pred HhhCCCcEEEecCC----------------------CCHHHHHHHHHhcCccEEEEehhh
Q 023070 133 KNALRIPVLANGNV----------------------RHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 133 ~~~~~ipVi~nGgI----------------------~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.+++|++.-||= .+.+++.++++ .|+--|=|++.+
T Consensus 198 ~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~-~GV~KiNi~T~l 256 (305)
T d1rvga_ 198 ARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAIS-LGIAKINTDTDL 256 (305)
T ss_dssp HHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred HhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHH-cCeEEEEeChHH
Confidence 99999999988853 24577778887 578777777644
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=95.74 E-value=0.031 Score=46.79 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.|++...+-|+ .+++|+|.||||.| .......+.+..++..+.+.+++|+++..+. .+.+
T Consensus 22 ~d~~~~~~~A~~m~~~GAdiIDIg~g------------~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~-------~~v~ 82 (262)
T d1f6ya_ 22 RDPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN-------IKAI 82 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECSC-------HHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCC------------CCCCCHHHHHHHHHHHHHHhhcCCccccCCc-------cHHH
Confidence 57777777676 66789999999853 3344556677888888888889999998432 2344
Q ss_pred HHHHH--cCCCEE-EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 97 KMLED--AGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 97 ~~l~~--~G~~~I-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+...+ .|++.| .|+|- ..++.....+....+.+++..
T Consensus 83 ~aal~~~~Ga~iINdIsg~----------~~~~~~~~~~~~~~~~~v~~~ 122 (262)
T d1f6ya_ 83 EAGLKKCKNRAMINSTNAE----------REKVEKLFPLAVEHGAALIGL 122 (262)
T ss_dssp HHHHHHCSSCEEEEEECSC----------HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhcccceeechhcc----------cchHHHHHHHHhcCCceEEEE
Confidence 44444 588777 44432 123343444445556666543
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.053 Score=45.67 Aligned_cols=125 Identities=14% Similarity=0.014 Sum_probs=80.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-..+.=.++++.+.+.+ .+||.+-+. ..+..+++++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~-~~s~~~~i~~ 88 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTG-ANATAEAISL 88 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------eccchhhCCHHHHHHHhhhhhhhccccceeEeecc-cchHHHHHHH
Confidence 6788888777 4567999998872 223332223333345555554443 478888743 3456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|++++.+..-.... .+...-+++++.+.+++++||+ .| |--.+++.+.++.+
T Consensus 89 ~~~a~~~Gad~~~~~pP~~~~---~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~~ 153 (292)
T d2a6na1 89 TQRFNDSGIVGCLTVTPYYNR---PSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAK 153 (292)
T ss_dssp HHTTTTSSCCEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred hccHHhcCCcceeccCCCCCC---CCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHhc
Confidence 999999999999887532211 1112235778888888999976 33 33467777776544
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=95.65 E-value=0.32 Score=40.04 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=92.1
Q ss_pred CCC-EEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRP-LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p-~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
.+| ++|-|.|.+.+++.+.+..+ ..++|.||+=+-+=. . ..+++.+.++++.+++.. ++|+.+=+|
T Consensus 14 g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~---------~--~~~~~~l~~~~~~lr~~~~~~PiI~T~R 82 (252)
T d1gqna_ 14 GMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFM---------D--IASTQSVLTAARVIRDAMPDIPLLFTFR 82 (252)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCS---------C--TTCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEcccc---------c--cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 445 67999999999998777755 568999999752100 0 135678888999998876 699999888
Q ss_pred CC-------CChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHH
Q 023070 85 VF-------PNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDV 152 (287)
Q Consensus 85 ~g-------~~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da 152 (287)
.. .+.++-.++.+.+.++| +++|.|--.... .....+....+..++.||++=- -.+.+++
T Consensus 83 ~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~--------~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l 154 (252)
T d1gqna_ 83 SAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGD--------ADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEM 154 (252)
T ss_dssp BGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCH--------HHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHH
T ss_pred chhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccH--------HHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHH
Confidence 72 13456678888888888 899998633211 1122222233445777776642 3344666
Q ss_pred HHHHH---hcCccEEEEe
Q 023070 153 QKCLE---ETGCEGVLSA 167 (287)
Q Consensus 153 ~~~l~---~~gad~VmiG 167 (287)
.+.++ ..|||.|=++
T Consensus 155 ~~~~~~m~~~gaDivKia 172 (252)
T d1gqna_ 155 VSRLRKMQALGADIPKIA 172 (252)
T ss_dssp HHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 55543 3588876443
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.63 E-value=0.028 Score=47.13 Aligned_cols=52 Identities=31% Similarity=0.494 Sum_probs=39.8
Q ss_pred HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 20 PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 20 ~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
.+...+-|+ .+++|+|.||||++-|. ....+.+..+++.+...+++|+++..
T Consensus 39 ~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT 91 (260)
T d3bofa1 39 EEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDI 91 (260)
T ss_dssp SHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccC
Confidence 344455454 67789999999987442 35678899999999999999999983
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.041 Score=44.02 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred EecC-CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhH
Q 023070 14 QFCA-NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDT 92 (287)
Q Consensus 14 Qi~g-~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~ 92 (287)
-||| .+++++..|+. .|+|.+=++| .|.+. |. =+++.+.++++.+. -.+|.|= ...+ .
T Consensus 4 KICGIt~~~d~~~~~~---~gaD~iGfif-~~~Sp-R~--------Vs~~~a~~i~~~~~---~~~V~Vf--v~~~---~ 62 (198)
T d1piia1 4 KVCGLTRGQDAKAAYD---AGAIYGGLIF-VATSP-RC--------VNVEQAQEVMAAAP---LQYVGVF--RNHD---I 62 (198)
T ss_dssp EECCCCSHHHHHHHHH---HTCSEEEEEC-CTTCT-TB--------CCHHHHHHHHHHCC---CEEEEEE--SSCC---H
T ss_pred eEcCCCcHHHHHHHHh---CCCCEEEEEc-cCCCC-CC--------cCHHHHHHhhhhcc---cccceee--eccc---h
Confidence 3566 46666555554 4889999998 44310 10 25777888877542 1122221 2223 3
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC----------------------------------------CcCCCCc-cccHHHHHH
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRD----------------------------------------EKDGKKF-RADWNAIKA 131 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~----------------------------------------~~~~~~~-~~~~~~i~~ 131 (287)
.++.+.++..+++.|.+||.... ...+++| ..||+.+.
T Consensus 63 ~~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~- 141 (198)
T d1piia1 63 ADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLN- 141 (198)
T ss_dssp HHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGT-
T ss_pred hhHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhc-
Confidence 34566677889999999984210 0011222 35887643
Q ss_pred HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 132 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 132 i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.....|++..||| +++.+.++++ +++.+|=+.+|.=.+|.
T Consensus 142 --~~~~~~~~LAGGl-~~~Nv~~a~~-~~p~gvDvsSGvE~~pG 181 (198)
T d1piia1 142 --GQSLGNVLLAGGL-GADNCVEAAQ-TGCAGLDFNSAVESQPG 181 (198)
T ss_dssp --TSCCTTEEEESSC-CTTTHHHHHT-TCCSEEEECGGGEEETT
T ss_pred --ccccceeEEecCC-CHHHHHHHHh-cCCCEEEeCCcccCCCC
Confidence 3445789999999 7899999986 79999999988866654
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.11 Score=43.39 Aligned_cols=109 Identities=24% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHHHHH-HHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-------------
Q 023070 20 PEILLNAA-RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------- 85 (287)
Q Consensus 20 ~~~~~~aA-~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------- 85 (287)
.++..+.| ++++.|+|+|-|-.| . ...++++++.+. ++||.--+.+
T Consensus 91 ~~~a~~~a~~l~~~GAdaVKlEgg------------------~-~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~ 150 (262)
T d1m3ua_ 91 PEQAFENAATVMRAGANMVKIEGG------------------E-WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKV 150 (262)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCCS------------------G-GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCC
T ss_pred hHHHHHHHHHHHhcCCcEEEeccc------------------h-hHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCccc
Confidence 34444444 466788999888622 1 123455665543 7999987755
Q ss_pred -CCChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 -FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 -g~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
|-+.+ ..++.|+.++++|+..|.+-+.. -+..+.|.+.+++|+|+-|.= .+|
T Consensus 151 qGkt~~ea~~l~~~a~~le~AGaf~ivlE~vp------------~~va~~It~~~~IPtIGIGAG------------~~c 206 (262)
T d1m3ua_ 151 QGRGDEAGDQLLSDALALEAAGAQLLVLECVP------------VELAKRITEALAIPVIGIGAG------------NVT 206 (262)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTCCEEEEESCC------------HHHHHHHHHHCSSCEEEESSC------------TTS
T ss_pred cCccHHHHHHHHHHHHHHHhhcceEEEEeccc------------HHHHHHHHhhhcceeEeeccc------------CCC
Confidence 22333 44677899999999999886442 256788899999999977742 368
Q ss_pred cEEEE-ehhhhh
Q 023070 162 EGVLS-AESLLE 172 (287)
Q Consensus 162 d~Vmi-GR~~l~ 172 (287)
||-++ .--+++
T Consensus 207 DGQvlv~~DilG 218 (262)
T d1m3ua_ 207 DGQILVMHDAFG 218 (262)
T ss_dssp SEEEECHHHHTT
T ss_pred cceEEehhHhhC
Confidence 88654 333444
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=95.25 E-value=0.078 Score=44.60 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
|.+.+.+-.+ .++. |+++|=+|- ..|-...-..+.-.++++.+.+.. ++||.+-+. +.+..++++
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~G----------ttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~ie 90 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGG----------STGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVE 90 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECc----------cCcchhhCCHHHHhhhhheeeccccCccccccccc-cccHHHHHH
Confidence 6778888777 4555 999999872 233333334444455666555444 578887652 346789999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi 141 (287)
+++.+++.|++++.+....... .+...-.++.+.+.+.+++||+
T Consensus 91 la~~a~~~Gad~i~~~pP~~~~---~s~~~~~~~~~~v~~~~~~pi~ 134 (293)
T d1f74a_ 91 LGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp HHHHHHHHTCSEEECCCCCSSC---CCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHcCCCEeeccCccccc---cchHHHHHHHhcccccCCceEE
Confidence 9999999999999775443211 0001113444555555566654
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=95.12 E-value=0.089 Score=43.69 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+++|.|..- +.+ + .-+++.+..+++.+++||..--=|-++-++.+... .|||+|.+--+
T Consensus 65 ~dp~~~A~~y~~~GA~aiSVLTe---~~~-F--~Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~-~GADaVLLIaa 137 (254)
T d1vc4a_ 65 VDPVEAALAYARGGARAVSVLTE---PHR-F--GGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECC---CSS-S--CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEEHH
T ss_pred CCHHHHHHHHHhcCCceEEEEcC---ccc-c--cccHHHHHHHHHHcCCCcccCCccccHHHHHHHHh-ccchHHHHHHH
Confidence 36788999999999999988632 111 2 34678889999999999999999999999999998 69999988766
Q ss_pred hhh
Q 023070 170 LLE 172 (287)
Q Consensus 170 ~l~ 172 (287)
++.
T Consensus 138 ll~ 140 (254)
T d1vc4a_ 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred HHH
Confidence 554
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.19 Score=42.00 Aligned_cols=132 Identities=11% Similarity=0.159 Sum_probs=80.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-..+.-.++++.+.+.+ .+|+.+-+. +.+..+++++
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G----------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~~s~~~~i~~ 89 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQL 89 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------EccchhhCCHHHHHHHHhhhHHhhccccceeeccc-cchhhHHHHH
Confidence 6777888777 4567999999983 234444344555566666665554 478887642 3456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCCCcEEE------ecCCCCHHHHHHHHHhcCccEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLA------NGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipVi~------nGgI~s~~da~~~l~~~gad~V 164 (287)
++.+++.|++++.+.+...... +...-.+...++.+ ..++|++. .|---+++.+.++.+...+-++
T Consensus 90 a~~a~~~Gad~~~v~~p~~~~~---~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgi 162 (295)
T d1hl2a_ 90 AASAKRYGFDAVSAVTPFYYPF---SFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGAL 162 (295)
T ss_dssp HHHHHHHTCSEEEEECCCSSCC---CHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHHhcCCceeeeeeccccCC---ChHHHHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhh
Confidence 9999999999999875543211 00112334444444 34667664 2333566767666543333333
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=94.99 E-value=0.027 Score=50.02 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.+.++|+|.|+|..-.. + ...-.+.++.+++.. ++|||+ |+|-|++.+..+++ .|||+|-+|-
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID~AhG-----~-s~~~~~~i~~ik~~~~~v~vIa-GNV~T~e~a~~L~~-~GaD~VkVGi 221 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVIDSAHG-----H-STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVGI 221 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCC-----S-SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHT-TTCSEEEECS
T ss_pred HHHHHHHHHHHhhccceeeeecccc-----c-hHHHHHHHHHHHHHCCCCceee-ccccCHHHHHHHHh-cCCCeeeecc
Confidence 4567888999999999999952211 1 022357788887664 687765 88999999999887 6999998885
Q ss_pred h
Q 023070 169 S 169 (287)
Q Consensus 169 ~ 169 (287)
|
T Consensus 222 G 222 (388)
T d1eepa_ 222 G 222 (388)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=94.97 E-value=0.26 Score=40.92 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC----------
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---------- 86 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g---------- 86 (287)
+..+...++++ +++.|+|+|-+-.| ....++++++.+ .++||.--+.+-
T Consensus 90 ~~~~~~~~a~~~~~~~gadavk~eg~-------------------~~~~~~i~~l~~-~gIPV~gHiGl~Pq~~~~~gG~ 149 (260)
T d1o66a_ 90 QSKEQAFAAAAELMAAGAHMVKLEGG-------------------VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGY 149 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC----
T ss_pred chhHHHHHHHHHHHHhhhhhccccch-------------------hhhhHHHHHHHH-cCCeeEeecccccchheecCcc
Confidence 45566666665 44667888777622 112345555544 379998776541
Q ss_pred ----C--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 87 ----P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 87 ----~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. +....++.++.++++|+..|.+-... -+..+.+.+.+++|+|+-|.= .+
T Consensus 150 r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE~Vp------------~~va~~It~~~~iptIgIGaG------------~~ 205 (260)
T d1o66a_ 150 KVQGRGGKAQALLNDAKAHDDAGAAVVLMECVL------------AELAKKVTETVSCPTIGIGAG------------AD 205 (260)
T ss_dssp -------CHHHHHHHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHCSSCEEEESSC------------SC
T ss_pred eeccccchhHHHHHHHHHHHHhhhhehhhhhcc------------HHHHHHHHhhhcceeeeccCC------------CC
Confidence 1 12346788899999999999886442 256788999999999977632 36
Q ss_pred ccEEEEe-hhhhh
Q 023070 161 CEGVLSA-ESLLE 172 (287)
Q Consensus 161 ad~VmiG-R~~l~ 172 (287)
|||-++= --+++
T Consensus 206 cDGQvLv~~DllG 218 (260)
T d1o66a_ 206 CDGQVLVMHDMLG 218 (260)
T ss_dssp SSEEEECHHHHTT
T ss_pred CCeeEEehHHhhC
Confidence 8886543 33444
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.97 E-value=0.2 Score=41.84 Aligned_cols=109 Identities=17% Similarity=-0.020 Sum_probs=69.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-+++.=.++++.+.+.. .++.+-+- +.+..+++++++
T Consensus 18 D~~~~~~~i~~l~~~Gv~gi~~~G----------ttGE~~~Ls~~Er~~~~~~~~~~~-~~~i~gv~-~~st~~~i~~a~ 85 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVT-NKIIFQVG-GLNLDDAIRLAK 85 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTC-SCEEEECC-CSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECe----------echhhhhCCHHHHHHHHHHHHhhc-cccccccc-cchhhhhhhhhh
Confidence 6778888777 4678999998872 223333334444467777776654 35544432 346678999999
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi 141 (287)
.+++.|++++.+..-....... ...-.++++.+.+++++||+
T Consensus 86 ~a~~~Ga~~~~~~~P~~~~~~~--~~~i~~~f~~Ia~a~~~pi~ 127 (293)
T d1w3ia_ 86 LSKDFDIVGIASYAPYYYPRMS--EKHLVKYFKTLCEVSPHPVY 127 (293)
T ss_dssp HGGGSCCSEEEEECCCSCSSCC--HHHHHHHHHHHHHHCSSCEE
T ss_pred hhhhhccccccccccchhccch--HHHHHHHHHHHHHhhcccee
Confidence 9999999999876432111000 01223667777777788865
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.91 E-value=0.051 Score=47.93 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEec---------CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHH
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIR---------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 130 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR---------~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~ 130 (287)
.|+...+-++.+++....|...+.. +|.. ++..+.++.+.++|++.++++.-.... ..-.+.++
T Consensus 80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g~~------~~~~~~i~ 152 (378)
T d1jr1a1 80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQGNS------IFQINMIK 152 (378)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSCCS------HHHHHHHH
T ss_pred CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCccc------hhhHHHHH
Confidence 4566666667776655444433211 1222 345566788899999999987442211 12245677
Q ss_pred HHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 131 AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 131 ~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+++.. ++||| .|+|.|++.+..+++ .|||+|-+|-|
T Consensus 153 ~ik~~~~~~~iI-aGnVaT~e~a~~L~~-aGAD~VkVGiG 190 (378)
T d1jr1a1 153 YMKEKYPNLQVI-GGNVVTAAQAKNLID-AGVDALRVGMG 190 (378)
T ss_dssp HHHHHSTTCEEE-EEEECSHHHHHHHHH-HTCSEEEECSS
T ss_pred HHHHHCCCCcee-ecccccHHHHHHHHH-hCCCEEeeccc
Confidence 777664 56665 699999999998887 69999988755
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.053 Score=43.58 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+|. .+.+++..+++.+.+.|+..+-++-|+. ..++.++++++.. +--+++.|-|.|.++++++++ .||
T Consensus 15 lr~-~~~~~a~~~~~al~~~Gi~~iEitlr~p---------~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~-aGa 83 (202)
T d1wa3a1 15 LRA-NSVEEAKEKALAVFEGGVHLIEITFTVP---------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVE-SGA 83 (202)
T ss_dssp ECC-SSHHHHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHH-HTC
T ss_pred EEC-CCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHh-hcc
Confidence 443 4578899999999999999999987753 2357777776432 334799999999999999998 599
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
+.++. --.||++.+...
T Consensus 84 ~fivs---P~~~~~v~~~~~ 100 (202)
T d1wa3a1 84 EFIVS---PHLDEEISQFCK 100 (202)
T ss_dssp SEEEC---SSCCHHHHHHHH
T ss_pred cEEeC---CCCcHHHHHHHH
Confidence 99862 233677776554
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=94.74 E-value=0.044 Score=47.46 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+|+...+.++.+++. ..++.+-+.. + .+..+.++.+.++|++.++|..-. +++ ..-.+.++.+++.. ++
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~vgv--~-~~~~e~~~~li~agvd~ivId~A~-----G~~-~~~~~~ik~ik~~~~~~ 140 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAVGT--S-PETMERVEKLVKAGVDVIVIDTAH-----GHS-RRVIETLEMIKADYPDL 140 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEECS--S-TTHHHHHHHHHHTTCSEEEECCSC-----CSS-HHHHHHHHHHHHHCTTS
T ss_pred chhhhHHHHHHHhhh-ccEEEEEEec--C-HHHHHHHHHHHHCCCCEEEEecCC-----CCc-hhHHHHHHHHHHhCCCC
Confidence 466666666666543 2333333333 2 235577888889999999885111 110 12246677777654 67
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
|||+ |+|.|++.++.+.+ .|||+|-+|-
T Consensus 141 ~via-GnV~t~~~a~~l~~-~GaD~v~VGi 168 (330)
T d1vrda1 141 PVVA-GNVATPEGTEALIK-AGADAVKVGV 168 (330)
T ss_dssp CEEE-EEECSHHHHHHHHH-TTCSEEEECS
T ss_pred CEEe-echhHHHHHHHHHH-cCCCEEeecc
Confidence 7666 88999999998887 6999998864
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.13 Score=43.52 Aligned_cols=157 Identities=11% Similarity=0.131 Sum_probs=89.6
Q ss_pred ecCCCHHHHHHHHHHHc-CCCCEEEEe-ccCChh-hhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC--h
Q 023070 15 FCANDPEILLNAARRVE-PYCDYVDIN-LGCPQR-IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--L 89 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~-~g~d~IdiN-~gcP~~-~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~--~ 89 (287)
.+..|+-. |++++ .||+++=+- .++-.. .-..|. . +-..+.+.+.++.|.+.+++||++..-.|.. .
T Consensus 21 ~~~~D~~s----A~~~e~~Gf~a~~~sg~~~sa~~~G~pD~---~-~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~ 92 (289)
T d1muma_ 21 VGTINANH----ALLAQRAGYQAIYLSGGGVAAGSLGLPDL---G-ISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSA 92 (289)
T ss_dssp EECSSHHH----HHHHHHTTCSCEEECHHHHHHTTSCCCSS---S-CCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSH
T ss_pred ecCCCHHH----HHHHHHcCCCEEEhhHHHHHHHccCCCCC---C-CCChHHHHHHHHHHhcccCCCeeecccccccccc
Confidence 34455544 45554 589888764 222111 111121 1 1245667777888888899999999988753 4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-Ccc---ccHHHHHHHHhh---C---CCcEEEecCCCC---HHHHHHH-
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFR---ADWNAIKAVKNA---L---RIPVLANGNVRH---MEDVQKC- 155 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~---~~~~~i~~i~~~---~---~ipVi~nGgI~s---~~da~~~- 155 (287)
.+..+.++.++++|+.++++-..+...+.+. .+. .--+.+.+++.. . ++-|++--+-.. .+++.+-
T Consensus 93 ~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~ 172 (289)
T d1muma_ 93 FNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERA 172 (289)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHH
Confidence 6888999999999999999965432221111 111 112445555432 2 344666555443 3343321
Q ss_pred --HHhcCccEEEEehhhhhCccchhchh
Q 023070 156 --LEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 156 --l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
..+.|||+|++- .+.++...+++.
T Consensus 173 ~aY~eAGAD~vf~~--~~~~~~~~~~~~ 198 (289)
T d1muma_ 173 QAYVEAGAEMLFPE--AITELAMYRQFA 198 (289)
T ss_dssp HHHHHTTCSEEEET--TCCCHHHHHHHH
T ss_pred HHhhhcCCcEEEec--CCCCHHHHHHHH
Confidence 123699999873 335666555443
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=94.62 E-value=0.1 Score=42.27 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=77.5
Q ss_pred CCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|++.=|.+.++++..+.++. ++.|+..|||-+-.|. ..+.++.+++.. ++.|.+-. =
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~------------------a~~~i~~l~~~~p~~~vGaGT--V 76 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQH------------------GLKAIQVLREQRPELCVGAGT--V 76 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTH------------------HHHHHHHHHHHCTTSEEEEEC--C
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHHhCCCcceeeee--e
Confidence 478888899999999999995 5679999999875443 234455555443 33333331 0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEecc--------------------CCCC-----------cCCCCccc----cHHHHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGR--------------------TRDE-----------KDGKKFRA----DWNAIKA 131 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~r--------------------t~~~-----------~~~~~~~~----~~~~i~~ 131 (287)
.+ .+-++.+.++|++++.--+- |..+ ..-+ |+ -..+++.
T Consensus 77 ~~----~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlF--PA~~~~g~~~ika 150 (216)
T d1mxsa_ 77 LD----RSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLF--PAEISGGVAAIKA 150 (216)
T ss_dssp CS----HHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEET--THHHHTHHHHHHH
T ss_pred ec----HHHHHHHHhCCCCEEECCCCcHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEec--cccccccHHHHHH
Confidence 11 11233334444443321000 0000 0011 22 2356777
Q ss_pred HHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 132 VKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 132 i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.-. +++++..|||. .+++.+.|+. |+-.+..|..++
T Consensus 151 l~~p~p~~~fiptGGV~-~~n~~~yl~~-~~v~avggs~l~ 189 (216)
T d1mxsa_ 151 FGGPFGDIRFCPTGGVN-PANVRNYMAL-PNVMCVGTTWML 189 (216)
T ss_dssp HHTTTTTCEEEEBSSCC-TTTHHHHHHS-TTBCCEEECTTS
T ss_pred HhcccccCceeccCCCC-HHHHHHHHhc-CCeEEEEccccC
Confidence 77643 69999999996 5899999985 444555554433
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.58 E-value=0.14 Score=39.70 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=57.3
Q ss_pred HHHHHHHhhc-cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++.+++. ...+|.|-++ + .+-++.+.++|+|.|-+..-+ .+.+++..+.+ ++.+.
T Consensus 67 ~~~~~~~~~~~~~~~IeVEv~---~----~~~~~~a~~~g~diImLDN~~------------pe~~~~av~~i~~~~~lE 127 (167)
T d1qapa1 67 RQAVEKAFWLHPDVPVEVEVE---N----LDELDDALKAGADIIMLDNFN------------TDQMREAVKRVNGQARLE 127 (167)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---S----HHHHHHHHHTTCSEEEESSCC------------HHHHHHHHHTTCTTCCEE
T ss_pred hhhhHHHhhcCCCceEEEecC---c----HHHHHHHHhcCCcEEEecCCC------------HHHHHHHHHhcCCceEEE
Confidence 3455555432 2456665542 2 233455667999998775322 23444444443 57889
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++-+ +|+|.+.+|.-.+.-|+
T Consensus 128 aSGgI-~~~ni~~ya~-~GVD~IS~galt~~a~~ 159 (167)
T d1qapa1 128 VSGNV-TAETLREFAE-TGVDFISVGALTKHVRA 159 (167)
T ss_dssp ECCCS-CHHHHHHHHH-TTCSEEECSHHHHEEEC
T ss_pred EeCCC-CHHHHHHHHH-cCCCEEECCcccCCCCc
Confidence 99999 5788888877 79999999976565454
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=94.52 E-value=0.3 Score=41.50 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=94.4
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHH-HHcCCCCEEEE--eccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAAR-RVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 78 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~-~~~~g~d~Idi--N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p 78 (287)
-.++||+.-+. |-+|+++++.+. .+..|+|.|-= |+..|. -+-+.+|.+.+.+.+++..+.++..
T Consensus 16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~--------~~p~~eRv~~~~~a~~~a~~~TG~~ 87 (307)
T d1geha1 16 IKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPW--------YNRFEERAEIMAKIIDKVENETGEK 87 (307)
T ss_dssp CCSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCT--------TSCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCC--------CCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 36899988774 778999999988 45667888754 332111 1112345566666666666667666
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH---hhCCCcEEEe----c-------
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLAN----G------- 144 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~---~~~~ipVi~n----G------- 144 (287)
...=.++.-+..+..+-++.+.++|+.++-|..-+ .-|..+..++ +..++||.+- |
T Consensus 88 ~lYa~NiT~~~~em~~ra~~a~~~G~~~vmi~~~~----------~G~~al~~lr~~~~~~~lpIh~H~A~~ga~~~~~~ 157 (307)
T d1geha1 88 KTWFANITADLLEMEQRLEVLADLGLKHAMVDVVI----------TGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPY 157 (307)
T ss_dssp CEEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHH----------HCHHHHHHHHHHHHHTTCEEEEECTTGGGTSSCTT
T ss_pred eEEEEEccCChHHHHHHHHHHHHcCCCEEEEeccc----------cchHHHHHHHHhhccCCeEEEeccccceeeecCcc
Confidence 55556665566788888999999999999775332 2244444444 4567888743 2
Q ss_pred -CCCCHHHHHHHHHhcCccEEEEeh
Q 023070 145 -NVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 145 -gI~s~~da~~~l~~~gad~VmiGR 168 (287)
|| |..-..+++...|+|.+.++.
T Consensus 158 ~Gi-s~~vl~kl~Rl~GaD~ih~~~ 181 (307)
T d1geha1 158 HGI-SMFVLAKLYRLIGIDQLHVGT 181 (307)
T ss_dssp SEE-CHHHHHHHHHHHTCSEEECCC
T ss_pred CCc-cHHHHHHHHHHhCcCceeccc
Confidence 34 344556777778999998864
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.51 E-value=0.035 Score=48.79 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 62 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 62 ~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
+...+.+..+.+.. ...+.+-+.. . .+..+.++.+.++|++.|+|.. .. ++. ..-.+.++++++.. ++|
T Consensus 80 ~e~~~~~~~~~~~~~~~~v~aavGv--~-~~~~er~~~l~~agvd~ivID~--A~---G~s-~~~~~~i~~ik~~~~~~~ 150 (365)
T d1zfja1 80 TEQAEEVRKVKRSEGRLLVAAAVGV--T-SDTFERAEALFEAGADAIVIDT--AH---GHS-AGVLRKIAEIRAHFPNRT 150 (365)
T ss_dssp HHHHHHHHHHHHHTSCBCCEEEECS--S-TTHHHHHHHHHHHTCSEEEECC--SC---TTC-HHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHhhhhhhccCceEEEEEecc--C-chHHHHHHHHHHcCCCEEEEEC--Cc---ccc-cchhHHHHHHHhhCCCcc
Confidence 33334444443333 2334444333 2 3455778888899999998851 11 110 12246677787765 677
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
|| .|+|-|++.+..+++ .|||+|-+|-
T Consensus 151 iI-aGNV~T~e~a~~L~~-aGaD~VkVGi 177 (365)
T d1zfja1 151 LI-AGNIATAEGARALYD-AGVDVVKVGI 177 (365)
T ss_dssp EE-EEEECSHHHHHHHHH-TTCSEEEECS
T ss_pred ee-ecccccHHHHHHHHh-cCCceEEeee
Confidence 76 599999999999887 6999998884
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=94.09 E-value=0.49 Score=38.83 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=80.2
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F---P 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g---~ 87 (287)
+-++..++++...| .+.|+|-|||+-. .. .|+ |.-.+.+ ++.+++.+++||.|=||+ | .
T Consensus 3 lEvcv~s~~~a~~A---~~~GAdRIELc~~-----l~---~GG-lTPS~g~----i~~~~~~~~iPv~vMIRPR~GdF~Y 66 (247)
T d1twda_ 3 LEICCYSMECALTA---QQNGADRVELCAA-----PK---EGG-LTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCY 66 (247)
T ss_dssp EEEEESSHHHHHHH---HHTTCSEEEECBC-----GG---GTC-BCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCC
T ss_pred EEEEeCCHHHHHHH---HHcCCCEEEEcCC-----cc---cCC-CCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCC
Confidence 34555666654443 3569999999621 11 122 2333344 444455678999888886 2 1
Q ss_pred Chh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecC---CCCHHHHHHHHHhcC
Q 023070 88 NLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg---I~s~~da~~~l~~~g 160 (287)
+.. ...+-++.+.+.|++.|.+-.=+.+ +..|.+.++++.+.. ++|+...=- +.++.++.+.|...|
T Consensus 67 s~~E~~~M~~di~~~k~~G~dGvV~G~L~~d------g~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG 140 (247)
T d1twda_ 67 SDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELG 140 (247)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEEECCC------CCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcC
Confidence 222 2345567788999999988544433 247777777776653 577765433 446666666666667
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
++.|.-
T Consensus 141 ~~rILT 146 (247)
T d1twda_ 141 IARVLT 146 (247)
T ss_dssp CCEEEE
T ss_pred CCeEec
Confidence 777753
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=94.05 E-value=0.12 Score=42.98 Aligned_cols=134 Identities=10% Similarity=0.179 Sum_probs=78.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccCCcEEEEecC-
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRV- 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~~pv~vKiR~- 85 (287)
.+++=| |..-+.-....++++.|.|.+-|||. .| +++...++++.+++ ..+.||.+-..+
T Consensus 22 KIIaTi-GPas~~~~~l~~li~aGvdv~RiN~S----------Hg-----~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~ 85 (258)
T d1pkla2 22 RIICTI-GPSTQSVEALKGLIQSGMSVARMNFS----------HG-----SHEYHQTTINNVRQAAAELGVNIAIALDTK 85 (258)
T ss_dssp EEEEEC-CGGGCSHHHHHHHHHHTEEEEEEETT----------SS-----CHHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cEEEee-CCCcCCHHHHHHHHHcCCCEEEEECC----------CC-----CHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 355555 33223333344567789999999985 22 34555555555554 456666655544
Q ss_pred CC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHH---HHHHH
Q 023070 86 FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDV---QKCLE 157 (287)
Q Consensus 86 g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da---~~~l~ 157 (287)
|+ +..+. +-.+...+.|+|++.++=.. ...|...++.+.... +++||+ -|.+.+-+ .+.++
T Consensus 86 gp~~~t~kd~-~di~~a~~~~vD~ialSFVr--------s~~Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI~~ 154 (258)
T d1pkla2 86 GPPAVSAKDR-VDLQFGVEQGVDMIFASFIR--------SAEQVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSIIE 154 (258)
T ss_dssp CCCSSCHHHH-HHHHHHHHHTCSEEEETTCC--------SHHHHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHHHH
T ss_pred ccccccccHH-HHHHHHHhcCCCeEEEeCCC--------CHHHHHHHHHHHHHcCCCCceEE--EecCchhhhhhhhHHh
Confidence 33 22222 23445568899999885110 034556666655432 455665 56665544 45666
Q ss_pred hcCccEEEEehhhhh
Q 023070 158 ETGCEGVLSAESLLE 172 (287)
Q Consensus 158 ~~gad~VmiGR~~l~ 172 (287)
. +|||||+||=|+
T Consensus 155 ~--sDgImIaRGDLg 167 (258)
T d1pkla2 155 E--SDGIMVARGDLG 167 (258)
T ss_dssp H--SSEEEECHHHHT
T ss_pred h--CCeeeEechhhh
Confidence 4 999999999765
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=93.98 E-value=0.51 Score=38.21 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=50.0
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 90 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~ 90 (287)
+||-|=-.+.++..+.++.+....+++.+++ |.- .. +| + ++++.+++ .++++....-+..-..
T Consensus 6 ~IvALD~~~~~~al~i~~~~~~~i~~iKvG~--~l~--~~--~G------~----~~i~~l~~-~~~~IflD~K~~DIgn 68 (237)
T d1dbta_ 6 PIIALDFASAEETLAFLAPFQQEPLFVKVGM--ELF--YQ--EG------P----SIVKQLKE-RNCELFLDLKLHDIPT 68 (237)
T ss_dssp CEEECCCSSHHHHHHHTGGGTTSCCEEEECH--HHH--HH--HT------H----HHHHHHHH-TTCEEEEEEEECSCHH
T ss_pred eEEEeccCCHHHHHHHHHHcCCcccEEEECH--HHH--hh--cC------H----HHHHHHHh-cchheehhhhhccCch
Confidence 3556655666766666666666778898873 221 11 11 2 34455554 3577776554543333
Q ss_pred hHHHHHHHHHHcCCCEEEEec
Q 023070 91 DTIKYAKMLEDAGCSLLAVHG 111 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~ 111 (287)
.....++.+.+.|++++++|+
T Consensus 69 Tv~~~~~~~~~~~~d~vtvh~ 89 (237)
T d1dbta_ 69 TVNKAMKRLASLGVDLVNVHA 89 (237)
T ss_dssp HHHHHHHHHHTTTCSEEEEEG
T ss_pred HHHHHHHhhhccccceEEeec
Confidence 334456667788999999995
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.73 E-value=0.087 Score=44.17 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...+.++.+.+.|++.|.+.|.+.+..... ..-....++.+.+.. ++||++.-+-.|.+++.+.. ++.|+|
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls-~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 100 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLT-SEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 100 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeEccchhhCC-HHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence 556677889999999999999988776643211 111223445554443 68998776666666665443 447999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+.-+.+..|.
T Consensus 101 ~ilv~pP~~~~~s 113 (292)
T d1xkya1 101 AVMLVAPYYNKPS 113 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999877766553
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.046 Score=44.35 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=81.4
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
++..||+++.+-++.. .|+..+-+-.| . .+++.-.+.++++++.+ ++.+.+..+-+|+.+++.
T Consensus 10 l~~gdpde~~~~~~~~-~G~~~~KiKvG------------~---~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~ 73 (221)
T d1r6wa1 10 LCNGDPDDLILKLADM-PGEKVAKVRVG------------L---YEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQ 73 (221)
T ss_dssp EECSCHHHHHHHHHTC-CSSEEEEEECS------------S---SCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHH
T ss_pred CCCCCHHHHHHHHHHc-CCCCeEEEeeC------------C---CCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHH
Confidence 3456899888866543 58988888754 1 23444456777777765 445555555589999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++.....|..- ++ | ..+.+..+++++.+++||.+.=.+++..+.. +...++|.|.+
T Consensus 74 ~~~~~l~~~~~~~ie~~----E~----P-~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~--~~~~~~d~v~i 135 (221)
T d1r6wa1 74 QFAKYVNPDYRDRIAFL----EE----P-CKTRDDSRAFARETGIAIAWDESLREPDFAF--VAEEGVRAVVI 135 (221)
T ss_dssp HHHHTSCTTTGGGEEEE----EC----C-BSSHHHHHHHHHHHCCCEEESGGGGSTTCCC--CCCTTEEEEEE
T ss_pred HHHHHHHHhhcCCeeee----cc----h-hhhhhHHHHHhhcccchhhhccccchhHHHH--HHHhcCcEEEe
Confidence 99999987665545321 11 0 1345667888888899999877777655432 22235666665
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=93.62 E-value=0.6 Score=38.83 Aligned_cols=154 Identities=15% Similarity=0.117 Sum_probs=84.8
Q ss_pred cCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccc-cccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhH
Q 023070 16 CANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGA-FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDT 92 (287)
Q Consensus 16 ~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~-~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~ 92 (287)
+-.|+-. |++++ .||++|=+-- ......-|+-- .+ -..+.+.+.++.|...+++||++.+-.|. +..+.
T Consensus 22 ~~~Da~S----Ar~~e~aGf~a~~~ss---~~~aas~G~pD~~~-lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v 93 (275)
T d1s2wa_ 22 EAHNGLS----ARIVQEAGFKGIWGSG---LSVSAQLGVRDSNE-ASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNA 93 (275)
T ss_dssp EECSHHH----HHHHHHHTCSCEEECC---HHHHHTC----------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHH
T ss_pred cCcCHHH----HHHHHHcCCCEEEhhH---HHHHHHcCCCCCCc-cchhhHHHHHHhhhcccCCceeEecccccccchHH
Confidence 4456544 45444 3898877641 11111111111 12 24556677888888899999999999986 44677
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcC----CCC-ccccH-HHHHHHH---hh---CCCcEEEecCCC----CHHHHHHHH
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKD----GKK-FRADW-NAIKAVK---NA---LRIPVLANGNVR----HMEDVQKCL 156 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~----~~~-~~~~~-~~i~~i~---~~---~~ipVi~nGgI~----s~~da~~~l 156 (287)
.+.++.++++|+.+|.+-..+...+. +.. ...+. +.+.+++ +. .++-|++--+-. ..+++.+-.
T Consensus 94 ~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~ 173 (275)
T d1s2wa_ 94 RRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRA 173 (275)
T ss_dssp HHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHH
Confidence 88899999999999999654432110 100 01111 2233332 22 245566666532 356665332
Q ss_pred ---HhcCccEEEEehhhhhCccchh
Q 023070 157 ---EETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 157 ---~~~gad~VmiGR~~l~nP~lf~ 178 (287)
.+.|||+|++ -+.-.+|.+..
T Consensus 174 ~aY~eAGAD~vf~-~~~~~~~~~~~ 197 (275)
T d1s2wa_ 174 EAYRNAGADAILM-HSKKADPSDIE 197 (275)
T ss_dssp HHHHHTTCSEEEE-CCCSSSSHHHH
T ss_pred HHHHhcCCCeeee-ccccCcHHHHH
Confidence 2369999997 23334555443
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.38 Score=39.63 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChh-hHHHHHH
Q 023070 19 DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ-DTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~-~~~~~a~ 97 (287)
+|.++++.. +.|+++|.+.. -...|||++. -+..+++.+++||-.| |+- +..++ .
T Consensus 62 d~~~~a~~y---e~GA~aiSVLT-------d~~~F~Gs~~--------~l~~vr~~~~~PiLrK-----DFIid~~QI-~ 117 (251)
T d1i4na_ 62 SLEDFIRMY---DELADAISILT-------EKHYFKGDPA--------FVRAARNLTCRPILAK-----DFYIDTVQV-K 117 (251)
T ss_dssp CHHHHHHHH---HHHCSEEEEEC-------CCSSSCCCTH--------HHHHHHTTCCSCEEEE-----CCCCSTHHH-H
T ss_pred cHHHHHHHH---hcCCcceEEec-------ccCCCCCCHH--------HHHHHhhcccCchhhh-----hhhhCHHHH-H
Confidence 566555433 44888888862 2334565432 2556777889999999 322 22332 2
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.....|+|+|.+-.+.-. ...+..+......+++-++.. |++.+++.++++..+++.++|-
T Consensus 118 ea~~~GADaiLLI~~~L~-------~~~l~~l~~~a~~lgle~LvE--vh~~~El~~al~~~~a~iiGIN 178 (251)
T d1i4na_ 118 LASSVGADAILIIARILT-------AEQIKEIYEAAEELGMDSLVE--VHSREDLEKVFSVIRPKIIGIN 178 (251)
T ss_dssp HHHHTTCSEEEEEGGGSC-------HHHHHHHHHHHHTTTCEEEEE--ECSHHHHHHHHTTCCCSEEEEE
T ss_pred HHHhhccceEEeeccccc-------HHHHHHHHHHHHHhCCeeecc--cCCHHHHHHHhcccccceeeee
Confidence 345789999988766543 234556666677788888876 9999999999975678888773
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.47 E-value=0.15 Score=39.62 Aligned_cols=94 Identities=9% Similarity=0.105 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCcE
Q 023070 64 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPV 140 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipV 140 (287)
+.+.++++++.. ..++.|-.+ ..+-++.+.++|+|.|-+..-+. .+. +.++.++.. ..+.+
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv~-------s~~q~~~a~~~~~diImLDN~sp---------~~~k~~v~~~~~~~~~i~l 129 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEVD-------SLEQLDAVLPEKPELILLDNFAV---------WQTQTAVQRRDSRAPTVML 129 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEES-------SHHHHHHHGGGCCSEEEEETCCH---------HHHHHHHHHHHHHCTTCEE
T ss_pred hhhhhhhhhhhcCCCceEEEec-------cHHHhhhhhhcCCcEEEecCcCh---------HhHHHHHHHhhccCCeeEE
Confidence 355666666543 456666642 34456777789999998863322 122 234444433 35778
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.. +|+|.+.+|.....-|+
T Consensus 130 EaSGgI-~~~ni~~ya~-~GvD~IS~galt~sa~~ 162 (169)
T d1qpoa1 130 ESSGGL-SLQTAATYAE-TGVDYLAVGALTHSVRV 162 (169)
T ss_dssp EEESSC-CTTTHHHHHH-TTCSEEECGGGTSSBCC
T ss_pred EEeCCC-CHHHHHHHHH-cCCCEEECCccccCCCc
Confidence 899999 5788888887 79999999954444344
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.33 Score=39.89 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=71.4
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccCCcEEEEecC-CCCh-hhHHHHHHHHH
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRV-FPNL-QDTIKYAKMLE 100 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~~pv~vKiR~-g~~~-~~~~~~a~~l~ 100 (287)
..++++.|.|.+-|||. .| +++...+.++.+++ ..+.|+.+-.-+ |+.. +.-.+..+...
T Consensus 20 l~~li~aGvdv~RlN~S----------Hg-----~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~ 84 (246)
T d1e0ta2 20 LAKMLDAGMNVMRLNFS----------HG-----DYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGC 84 (246)
T ss_dssp HHHHHHHTEEEEEEETT----------SS-----CHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECC----------CC-----CHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHH
Confidence 34466779999999984 12 34445555555543 446777666554 3332 22234455566
Q ss_pred HcCCCEEEEec-cCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHH---HHHHHHhcCccEEEEehhhhh
Q 023070 101 DAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMED---VQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 101 ~~G~~~I~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~d---a~~~l~~~gad~VmiGR~~l~ 172 (287)
+.|+|+|.++- |+ ..|...++++.+.. +++||+ -|.+.+- +.+.++. +|||||+||=|+
T Consensus 85 ~~~vD~ialSFVr~---------~~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~~--sDgImIaRGDLg 150 (246)
T d1e0ta2 85 EQGVDFVAASFIRK---------RSDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILEA--SDGIMVARGDLG 150 (246)
T ss_dssp HHTCSEEEESSCCS---------HHHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHHH--SSEEEEEHHHHH
T ss_pred HcCCCEEEEcCCCC---------HHHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHhh--cceEEEEccchh
Confidence 89999998862 21 24555555554332 355554 3555543 4566664 899999999764
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=93.23 E-value=0.25 Score=41.89 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcC----CCCccccHHHHHHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKD----GKKFRADWNAIKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~----~~~~~~~~~~i~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.....+..++.|.+.+.+|--...... .......|+.++++++..+.|++. .|.+.+++++.++.+ .|+|+|.
T Consensus 109 ~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~-~GaD~i~ 187 (329)
T d1p0ka_ 109 AAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE-AGAAAVD 187 (329)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHh-cCCCEEE
Confidence 344566778899999988754332111 111134578899999998888886 788899999999888 5999999
Q ss_pred Ee
Q 023070 166 SA 167 (287)
Q Consensus 166 iG 167 (287)
++
T Consensus 188 v~ 189 (329)
T d1p0ka_ 188 IG 189 (329)
T ss_dssp EE
T ss_pred Ec
Confidence 84
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=93.12 E-value=0.11 Score=43.46 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=58.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...+.++.+.+.|++.|.+-|.|.+..... ..-....++.+.+.. ++||++.-+=.|.+++.+.. ++.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls-~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad 98 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGTTGESPTVN-EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN 98 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCC-HHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhhCC-HHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCC
Confidence 556667888888999999999988776643211 011123333444433 69999887767777766554 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+.-+.+..|.
T Consensus 99 ~v~v~pP~y~~~s 111 (295)
T d1o5ka_ 99 GVLVVTPYYNKPT 111 (295)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999877776553
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.01 E-value=0.16 Score=42.62 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...+.++.+.+.|++.|.+.|.+.+..... ..-..+.++.+.+.+ ++||++.-+=.|.+++.+.. ++.|+|
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls-~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGTTGESPTTT-DGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhhCC-HHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 555677889999999999999987766542211 011123334444433 58888766666667665544 336999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+..+.+..|.
T Consensus 105 ~v~i~~P~~~~~~ 117 (296)
T d1xxxa1 105 GLLVVTPYYSKPP 117 (296)
T ss_dssp EEEEECCCSSCCC
T ss_pred eEEEEeccCCCCC
Confidence 9999988877664
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.93 E-value=0.1 Score=40.74 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCc
Q 023070 64 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIP 139 (287)
Q Consensus 64 ~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ip 139 (287)
+.+.++.+++.. ..+|.|-++. .+-+..+.+.|+|.|-+..-+. .+. +.+..++.. .++.
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv~~-------~~e~~~a~~~g~d~i~LDn~~p---------e~~k~~~~~lk~~~~~i~ 127 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEVEN-------LEDALRAVEAGADIVMLDNLSP---------EEVKDISRRIKDINPNVI 127 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEESS-------HHHHHHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHhhCCCCceEEEEeCc-------HHHHHHHHhcCccEEEEcCcCh---------hhHhHHHHHHHhhCCcEE
Confidence 345666666544 3556666432 3345566789999988763322 222 222333333 3577
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++|||+ ++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 128 lEaSGGI~-~~ni~~~a~-~GVD~Is~g~lt~~a~~ 161 (170)
T d1o4ua1 128 VEVSGGIT-EENVSLYDF-ETVDVISSSRLTLQEVF 161 (170)
T ss_dssp EEEEECCC-TTTGGGGCC-TTCCEEEEGGGTSSCCC
T ss_pred EEEECCCC-HHHHHHHHH-cCCCEEEcCccccCCCC
Confidence 89999995 688876665 79999999965554444
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=92.65 E-value=0.58 Score=39.96 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=91.4
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCCEEEE--ecc----CChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NLG----CPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~-~~~g~d~Idi--N~g----cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++||+.-+. |-+|+++++.+.. +..|+|.|-= |+. ||. .+|.+.+.+.+++..+.
T Consensus 14 v~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~------------~eRv~~~~~av~~a~~e 81 (325)
T d1wdda1 14 KYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRW------------RDRFVFCAEAIYKSQAE 81 (325)
T ss_dssp CCSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCCcch------------HHHHHHHHHHHHHHHHh
Confidence 45899987774 6789999999884 5567888754 333 333 24455566666666555
Q ss_pred cCCcEEEEecC-CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hCCCcEEE--------
Q 023070 75 LNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA-------- 142 (287)
Q Consensus 75 ~~~pv~vKiR~-g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~-------- 142 (287)
++.....=..+ +.+.++..+-++.+.++|++.+-+-.-+ .-|..+..+++ ..++|+.+
T Consensus 82 TG~~k~y~~nit~~~~~em~~ra~~a~e~G~~~~mi~~~~----------~G~~a~~~l~~~~~~~~l~ih~Hra~~ga~ 151 (325)
T d1wdda1 82 TGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT----------GGFTANTSLAHYCRDNGLLLHIHRAMHAVI 151 (325)
T ss_dssp HSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHH----------HCHHHHHHHHHHHHHHTCEEEEECTTHHHH
T ss_pred hCCceeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeccc----------ccHHHHHHHHHhhhhcCceeeccccccccc
Confidence 65544444443 3455677777888889999998764221 22344444443 34678776
Q ss_pred ----ecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 143 ----NGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 143 ----nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+.|| +..-..+++.-.|+|.+.++..
T Consensus 152 tr~~~~Gi-s~~vl~kl~RLaGaD~ih~~~~ 181 (325)
T d1wdda1 152 DRQKNHGM-HFRVLAKALRMSGGDHIHAGTV 181 (325)
T ss_dssp HSCSSSEE-CHHHHHHHHHHHCCSEEECCCS
T ss_pred ccCCCCCc-cHHHHHHHHHHcCCCccccCcc
Confidence 5567 4455667777789999988754
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.60 E-value=0.99 Score=37.23 Aligned_cols=105 Identities=21% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCHHHHHHH-HHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---------
Q 023070 18 NDPEILLNA-ARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------- 86 (287)
Q Consensus 18 ~~~~~~~~a-A~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--------- 86 (287)
.++++..+. .+.+ +.|+|+|-|-.| . . ..++++++.+. ++||.--+.+-
T Consensus 92 ~s~~~a~~nA~r~~~~~ga~avkleg~------------~---~----~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg 151 (262)
T d1oy0a_ 92 AGPTAALAAATRFLKDGGAHAVKLEGG------------E---R----VAEQIACLTAA-GIPVMAHIGFTPQSVNTLGG 151 (262)
T ss_dssp TCHHHHHHHHHHHHHTTCCSEEEEEBS------------G---G----GHHHHHHHHHH-TCCEEEEEECCC--------
T ss_pred cchHHHHHHHHHHHhccccceeeechh------------h---h----hHHHHHHHHhc-CCceEEeeeecceeeeecCc
Confidence 345555554 4556 458899988632 1 1 23444554432 78988766542
Q ss_pred -----CCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 -----PNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 -----~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+. ...++-++.++++|+..|.+-.. ..+..++|.+.+++|+|+-|.= .
T Consensus 152 ~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~V------------p~~la~~It~~~~IPtIGIGAG------------~ 207 (262)
T d1oy0a_ 152 FRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV------------PAELATQITGKLTIPTVGIGAG------------P 207 (262)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCSEEEEESC------------CHHHHHHHHHHCSSCEEEESSC------------S
T ss_pred cceeccchhhhHhHHHHHHHHhCCcEEEecccc------------cHhHHHHHHhhCCceEEEeccC------------C
Confidence 121 13345588899999999988643 2366788999999999977632 3
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
+|||-++
T Consensus 208 ~cDGQvL 214 (262)
T d1oy0a_ 208 NCDGQVL 214 (262)
T ss_dssp CSSEEEE
T ss_pred CCCeeEE
Confidence 6898654
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=92.58 E-value=0.089 Score=45.56 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHHHHcCCCEEEE---eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~v---h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
++.+.+.++|+.+.+.|++.+.- -.||......+.+..-+++++++++..++||+. +|.+++++..+.+. +|.
T Consensus 105 ES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g~~gL~~l~~~k~~~glpvvT--dV~~~~~~~~~~e~--~Di 180 (338)
T d1vr6a1 105 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVT--EALGEDDLPKVAEY--ADI 180 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEE--ECSSGGGHHHHHHH--CSE
T ss_pred CCHHHHHHHHHHHHHhCccccccceecccccccccccchHHHHHHHHHHHhhcCceeEE--eccchhhhhhhhce--eee
Confidence 35567789999999999987743 234443222333344578889999999999986 79999999988874 999
Q ss_pred EEEehhhhhCccchhchhh
Q 023070 164 VLSAESLLENPALFAGFRT 182 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~ 182 (287)
+.||--++.|.+|...+..
T Consensus 181 lQI~A~~~~n~~LL~~~g~ 199 (338)
T d1vr6a1 181 IQIGARNAQNFRLLSKAGS 199 (338)
T ss_dssp EEECGGGTTCHHHHHHHHT
T ss_pred EEechhhccCHHHHHHhhc
Confidence 9999999999999887643
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.42 E-value=0.9 Score=38.10 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=93.4
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHH-HcCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARR-VEPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~-~~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++||+.-+. |-+|+++++.+.. +..|+|.|-= |+ .||. .+|.+.+.+.++...+.
T Consensus 16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~------------~eRv~~~~~a~~~a~~~ 83 (291)
T d2d69a1 16 VKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRF------------EERVRKLYRVRDRVEAE 83 (291)
T ss_dssp CCSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCH------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCCCCCH------------HHHHHHHHHHHHHHHHH
Confidence 46899988774 7789999999984 5567888752 22 2443 34566666777766666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH---hhCCCcEEEe--------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK---NALRIPVLAN-------- 143 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~---~~~~ipVi~n-------- 143 (287)
++..+..=..+..+.++..+-++.+.++|+.++-|..-+ .-|+.+..++ +...+||.+-
T Consensus 84 tG~~~~Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~~~~----------~G~~al~~l~~~~~~~~l~ih~Hra~~g~~~ 153 (291)
T d2d69a1 84 TGETKEYLINITGPVNIMEKRAEMVANEGGQYVMIDIVV----------AGWSALQYMREVTEDLGLAIHAHRAMHAAFT 153 (291)
T ss_dssp HSSCCEEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHHH----------HCHHHHHHHHHHHHHHTCEEEEECTTTHHHH
T ss_pred hCCeeEEEEeccCCHHHHHHHHHHHHHcCCCEEEecccc----------cchHHHHHHHHhhccccceeeecccccceec
Confidence 666665555665567788888999999999998775322 2244444444 3445776643
Q ss_pred ----cCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 144 ----GNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 144 ----GgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.|| |..-..++..-.|+|.+.++.
T Consensus 154 r~~~~Gi-s~~v~~kL~RLaGaD~ih~~~ 181 (291)
T d2d69a1 154 RNPRHGI-TMLALAKAARMIGVDQIHTGT 181 (291)
T ss_dssp SCTTSEE-CHHHHHHHHHHHTCSEEECCC
T ss_pred cCCCCcc-cHHHHHHHHHHcCCCeeecCC
Confidence 244 445556677767999998875
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.22 Score=41.44 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc----cCCcEEEEecC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN----LNVPVSCKIRV 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~----~~~pv~vKiR~ 85 (287)
.+++=| |..-++.....+++++|.|.+-|||. .| +++...++++.+|+. .+.||.+-..+
T Consensus 22 KIIaTi-GPas~~~e~l~~li~aG~dv~RlN~S----------Hg-----~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl 85 (265)
T d1a3xa2 22 SIIGTI-GPKTNNPETLVALRKAGLNIVRMNFS----------HG-----SYEYHKSVIDNARKSEELYPGRPLAIALDT 85 (265)
T ss_dssp EEEEEC-CTTTCSHHHHHHHHHHTEEEEEEETT----------SC-----CHHHHHHHHHHHHHHHHHCCCSCCBCEEEC
T ss_pred eEEEee-CCCCCCHHHHHHHHHcCCCEEEEECC----------CC-----CHHHHHHHHHHHHHHhhhccCCceeeeccc
Confidence 466666 33223333344566789999999984 22 344555666665543 24555443333
Q ss_pred -CC--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHH---HHHHHHH
Q 023070 86 -FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHME---DVQKCLE 157 (287)
Q Consensus 86 -g~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~---da~~~l~ 157 (287)
++ +..+ .+-.+...+.|+|+|.++-.. ...|...++.+... .+++||+ -|.+.+ ++.+.++
T Consensus 86 ~~p~ltekD-~~di~~a~~~~vD~ialSFVr--------s~~Di~~~r~~l~~~~~~~~Iia--KIE~~~al~NldeIi~ 154 (265)
T d1a3xa2 86 KGPALSEKD-KEDLRFGVKNGVHMVFASFIR--------TANDVLTIREVLGEQGKDVKIIV--KIENQQGVNNFDEILK 154 (265)
T ss_dssp CCCSSCHHH-HHHHHHHHHTTCCEECCTTCC--------SHHHHHHHHHHHCGGGTTSCCEE--EECSHHHHTTHHHHHH
T ss_pred cchhcccch-HHHHHHhhhcccceEeeccCC--------CHHHHHHHHHHHHHhcCCCeEEe--eccchHHHhChHHHHh
Confidence 22 2222 233455678999999775110 03456666665432 2466664 344443 3345666
Q ss_pred hcCccEEEEehhhhh
Q 023070 158 ETGCEGVLSAESLLE 172 (287)
Q Consensus 158 ~~gad~VmiGR~~l~ 172 (287)
. +|||||+||=|+
T Consensus 155 ~--sDgimIaRGDLg 167 (265)
T d1a3xa2 155 V--TDGVMVARGDLG 167 (265)
T ss_dssp H--CSEEEEEHHHHH
T ss_pred h--cceeEEEccchh
Confidence 4 999999999764
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=92.08 E-value=0.19 Score=42.10 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHh---cCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEE---TGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~---~gad 162 (287)
|.+...+.++.+.+.|++.|.+.|.+.+..... ..-..+.++.+.+.+ ++||++..+=.+.+++.+..+. .|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls-~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad 98 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLN-HDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhhCC-HHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence 455667888899999999999988776542211 011123344444443 5899998888888888777653 5999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
++|+..+.+..|.
T Consensus 99 ~~~~~pP~~~~~~ 111 (292)
T d2a6na1 99 GCLTVTPYYNRPS 111 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred ceeccCCCCCCCC
Confidence 9999987766543
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.39 E-value=0.16 Score=44.37 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+-+..+.++|++.|+|..-... . ..-.+.++++++..++|||+ |+|-|++.+.. ..|||+|-+|
T Consensus 118 ~~r~~~l~~aGvd~ivID~A~Gh---~---~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~---l~gaD~VkVG 182 (368)
T d2cu0a1 118 IKRAIELDKAGVDVIVVDTAHAH---N---LKAIKSMKEMRQKVDADFIV-GNIANPKAVDD---LTFADAVKVG 182 (368)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCC---C---HHHHHHHHHHHHTCCSEEEE-EEECCHHHHTT---CTTSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCcccc---h---hhhhhhhhhhhhhcccceee-ccccCHHHHHh---hhcCcceeec
Confidence 34566788999999988633211 0 12346788888888999887 99999988754 3589998877
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=91.21 E-value=0.53 Score=38.62 Aligned_cols=71 Identities=17% Similarity=0.351 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE----e-cC-CCCHHHHHHHH------HhcC
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA----N-GN-VRHMEDVQKCL------EETG 160 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~----n-Gg-I~s~~da~~~l------~~~g 160 (287)
++-+..+++.|++.|.+-..-..+ ...++...++.+++.+++||.+ - |+ +.|.++...+. ++.|
T Consensus 10 ~~~a~~A~~~GAdRIELc~~l~~G----GlTPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G 85 (247)
T d1twda_ 10 MECALTAQQNGADRVELCAAPKEG----GLTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEECBCGGGT----CBCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEcCCcccC----CCCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 344677889999999886443221 1246788999999999999875 2 33 67888776554 3469
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
+|||++|
T Consensus 86 ~dGvV~G 92 (247)
T d1twda_ 86 FPGLVTG 92 (247)
T ss_dssp CSEEEEC
T ss_pred CCeEEEE
Confidence 9999998
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.88 E-value=2.4 Score=35.13 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=76.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc---------CCcEE
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---------NVPVS 80 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---------~~pv~ 80 (287)
.+++=| |..-++.....+++++|.|.+-|||. .| +++...+.++.+|+.. ..|+.
T Consensus 34 KIIaTi-GPas~~~e~l~~Li~aGvnv~RiN~S----------Hg-----~~e~h~~~i~~iR~~~~~~~~~~il~~~~~ 97 (282)
T d2g50a2 34 GIICTI-GPASRSVETLKEMIKSGMNVARMNFS----------HG-----THEYHAETIKNVRTATESFASDPILYRPVA 97 (282)
T ss_dssp EEEEEC-STTTCSHHHHHHHHHHTCCEEEEETT----------SS-----CHHHHHHHHHHHHHHHHTTTTCTTTCCCCE
T ss_pred cEEEEe-CCCCCCHHHHHHHHHcCCCEEEEeCC----------CC-----CHHHHHHHHHHHHHHHHHhCCCceeccccc
Confidence 355555 43334444445567789999999985 22 3455555555555431 23555
Q ss_pred EEecCC-C--ChhhHHHHHHHHHHcCCCEEEEec-cCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHH---H
Q 023070 81 CKIRVF-P--NLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHME---D 151 (287)
Q Consensus 81 vKiR~g-~--~~~~~~~~a~~l~~~G~~~I~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~---d 151 (287)
+..-.. + +..+ .+-.+...+.|+|+|.++= |+ ..|...++.+.+.. +++|++ -|.+.+ +
T Consensus 98 I~~d~~~~~l~~~d-i~di~~a~~~~vD~ialSFVrs---------~~DI~~~r~~l~~~g~~~~Iia--KIE~~~al~N 165 (282)
T d2g50a2 98 VALDTKGPAVSEKD-IQDLKFGVEQDVDMVFASFIRK---------AADVHEVRKILGEKGKNIKIIS--KIENHEGVRR 165 (282)
T ss_dssp EEEECCCCSSCHHH-HHHHHHHHHTTCSEEEETTCCS---------HHHHHHHHHHHTTTTTTSEEEE--EECSHHHHHT
T ss_pred cccccccccccchH-HHHHHHhhhccccceeecccCC---------HHHHHHHHHHHHHcCCCceEEE--eecchhhhhc
Confidence 544332 2 2223 2334566789999998861 11 24555566555432 456665 233333 3
Q ss_pred HHHHHHhcCccEEEEehhhhh
Q 023070 152 VQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+.++. +|||||+||=++
T Consensus 166 ldeIi~~--sDgIMIaRGDLg 184 (282)
T d2g50a2 166 FDEILEA--SDGIMVARGDLG 184 (282)
T ss_dssp HHHHHHH--SSEEEEEHHHHH
T ss_pred chhhccc--cceeeeeccccc
Confidence 4456664 899999999774
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.61 E-value=1.6 Score=34.89 Aligned_cols=128 Identities=9% Similarity=0.027 Sum_probs=72.0
Q ss_pred CCEEEEecCCCHHHHHH-----HHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE-
Q 023070 9 RPLFVQFCANDPEILLN-----AARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC- 81 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~-----aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v- 81 (287)
.|+.||+.+-..+...+ ..+.+ +.|||+|||...+ ... ..+++.+.+.++. .++.+..
T Consensus 2 ~p~~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~~~~----------~~~-~~~~~~l~~~~~~----~GL~i~~~ 66 (250)
T d1yx1a1 2 HPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREEL----------FAG-PPDTEALTAAIQL----QGLECVFS 66 (250)
T ss_dssp CCEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGGG----------CSS-CCCHHHHHHHHHH----TTCEEEEE
T ss_pred CCEEEEhhhcccccccccCHHHHHHHHHHhCCCEEEEeccc----------CCC-cchHHHHHHHHHH----cCCEEEEe
Confidence 58999999877665432 12333 4599999995210 000 1233444443333 3554432
Q ss_pred -----EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHH
Q 023070 82 -----KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDV 152 (287)
Q Consensus 82 -----KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da 152 (287)
....+...++....++.+.+.|+..|.++...... ..+++.+....+..++.+..--. +.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~~~------~~~l~~l~~~a~~~Gv~l~iE~h~~~~~~~~~~~ 140 (250)
T d1yx1a1 67 SPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPE------QPDLAALGRRLARHGLQLLVENDQTPQGGRIEVL 140 (250)
T ss_dssp EEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCS------SCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHH
T ss_pred cccccccCchhhHHHHHHHHHHHHHhCCCEEEEeecccch------hHHHHHHHHHHHHcCCEEEEEeCCCcccCCHHHH
Confidence 22222233455666777789999999987543321 24567777777777777665432 3345555
Q ss_pred HHHHH
Q 023070 153 QKCLE 157 (287)
Q Consensus 153 ~~~l~ 157 (287)
..++.
T Consensus 141 ~~~~~ 145 (250)
T d1yx1a1 141 ERFFR 145 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.52 Score=38.51 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=69.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHH-
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKA- 131 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~- 131 (287)
|=.+..+.+.+..+++.+++. ++.||+=+-. + .+-++.+.+.|+|.|-+|........... ....++.++.
T Consensus 105 Gld~~~~~~~L~~~i~~l~~~-girvSLFiDp--d----~~~i~~a~~lGad~IElhTG~Ya~a~~~~~~~~el~~i~~a 177 (242)
T d1m5wa_ 105 GLDVAGQRDKMRDACKRLADA-GIQVSLFIDA--D----EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKA 177 (242)
T ss_dssp CCCSGGGHHHHHHHHHHHHHT-TCEEEEEECS--C----HHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHHHH
T ss_pred ceeehhhHHHHHHHHHHHHhc-CCeEEEEecc--c----hhhHHHHhhcCcceeeeecccccccccchhhHHHHHHHHHH
Confidence 556777889999999999765 6666655422 2 12345566999999999955433211100 0011222222
Q ss_pred --HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 132 --VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 132 --i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.....++-|=+.=|+ +.+.+..+.+-.+.+=|-||-+++.+--
T Consensus 178 a~~A~~lGL~VnAGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI~eal 222 (242)
T d1m5wa_ 178 ATFAASLGLKVNAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAV 222 (242)
T ss_dssp HHHHHHTTCEEEEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHH
T ss_pred HHHHHhcCCcccCCCCc-CccchHHHhcCCCCeEEeccHHHHHHHH
Confidence 223457777776676 3566665555567999999998886543
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.86 Score=37.14 Aligned_cols=73 Identities=18% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
|.+.-+.+++|+.++++|++.||||.|.-.- ....+-+..+++.+++|+=..|... .+ +.++.....-+-|.
T Consensus 20 g~~~Pd~~~~a~~~~~~GadgITvH~R~DrR------HI~~~Dv~~l~~~~~~~lNlE~a~~-~e-~i~ia~~~kP~qvt 91 (242)
T d1m5wa_ 20 GTAYPDPVQAAFIAEQAGADGITVHLREDRR------HITDRDVRILRQTLDTRMNLEMAVT-EE-MLAIAVETKPHFCC 91 (242)
T ss_dssp SCCCSCHHHHHHHHHTTTCSEEEEECCTTCS------SSCHHHHHHHHHHCSSEEEEEECSS-HH-HHHHHHHHCCSEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCeEEeCCCCCcc------ccchHHHHHHHHHhhcccccccccc-hh-HHHHHHHhccceEE
Confidence 3344578899999999999999999996431 2334556777777888877777664 23 33333333444444
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 92 L 92 (242)
T d1m5wa_ 92 L 92 (242)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=90.05 E-value=0.52 Score=39.25 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=46.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+++...+-|+ ++++|+|.|||-.=+-.+.... -+-....+.+..+++.+++..++++||..+- .+.++
T Consensus 40 ~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~----is~~eE~~rl~p~i~~~~~~~~~~iSIDT~~-------~~Va~ 108 (273)
T d1tx2a_ 40 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK----VSVEEEIKRVVPMIQAVSKEVKLPISIDTYK-------AEVAK 108 (273)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCC----CCC----CCHHHHHHHHHHHHHHHHHHSCSCEEEECSC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEeeceeccccccc----cCHHHHHHhhchhHHhhhccceEEEehHHhh-------HHHHH
Confidence 3444444344 6688999999974322221111 0112234456667777777778899988543 34566
Q ss_pred HHHHcCCCEE-EEec
Q 023070 98 MLEDAGCSLL-AVHG 111 (287)
Q Consensus 98 ~l~~~G~~~I-~vh~ 111 (287)
.+.++|++.| .|.|
T Consensus 109 ~al~~G~~iINDvsg 123 (273)
T d1tx2a_ 109 QAIEAGAHIINDIWG 123 (273)
T ss_dssp HHHHHTCCEEEETTT
T ss_pred HHHHcCCeEEecccc
Confidence 6677777766 3443
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=90.05 E-value=0.27 Score=40.83 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcC---------------CCCccccHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---------------GKKFRADWNA 128 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~---------------~~~~~~~~~~ 128 (287)
.+.++.+++.-..-+..=+-.| ++.+.+.++++.+.++|+|.|-+-=-..++.. +.....-++.
T Consensus 5 ~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~ 84 (261)
T d1rd5a_ 5 SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEM 84 (261)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhh
Confidence 3445555544334444445555 57788899999999999999988411111111 1111122567
Q ss_pred HHHHHhhCCCcEEEecCCCCHHH--HHHHHHhcCccEEEE
Q 023070 129 IKAVKNALRIPVLANGNVRHMED--VQKCLEETGCEGVLS 166 (287)
Q Consensus 129 i~~i~~~~~ipVi~nGgI~s~~d--a~~~l~~~gad~Vmi 166 (287)
++++++..++|++..+..+..-. ++++ .+.|+||+++
T Consensus 85 ~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~-~~~GvdG~Ii 123 (261)
T d1rd5a_ 85 LREVTPELSCPVVLLSYYKPIMFRSLAKM-KEAGVHGLIV 123 (261)
T ss_dssp HHHHGGGCSSCEEEECCSHHHHSCCTHHH-HHTTCCEEEC
T ss_pred hhcccccccCceeeeeeecchhhHHHHHH-HhcCceeeee
Confidence 78888888899998887543221 2233 4469999987
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.92 E-value=1.6 Score=37.24 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=56.7
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccC-------CC--------------C----cC----------CCCccccHHHHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRT-------RD--------------E----KD----------GKKFRADWNAIKA 131 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt-------~~--------------~----~~----------~~~~~~~~~~i~~ 131 (287)
.+.....+++++.+++|+..+.++--. +. . .. .......|+.+..
T Consensus 132 ~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (349)
T d1tb3a1 132 SDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSL 211 (349)
T ss_dssp SCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHH
Confidence 344566788899999999988764210 00 0 00 0001246899999
Q ss_pred HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 132 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 132 i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+++..+.|++. .||.+++|+..+.+ .|+|++.++
T Consensus 212 l~~~~~~pii~-Kgi~~~~da~~a~~-~G~d~i~vs 245 (349)
T d1tb3a1 212 LQSITRLPIIL-KGILTKEDAELAMK-HNVQGIVVS 245 (349)
T ss_dssp HHTTCCSCEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHhcCCCccc-chhhhhHHHHHHHH-hhccceeee
Confidence 99999999988 46789999999998 599999986
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=89.61 E-value=1.6 Score=35.90 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=49.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccccc---CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+-|+ ++++|+|.|||-.=+-.+ |+... ...+.+.-+++.+++ .++++||..+- .+
T Consensus 24 ~~~~a~~~~~~m~~~GAdiIDIGaeSTrP-------ga~~is~~eE~~Rl~pvi~~l~~-~~~~iSIDT~~-------~e 88 (264)
T d1ad1a_ 24 NVESAVTRVKAMMDEGADIIDVGGVSTRP-------GHEMITVEEELNRVLPVVEAIVG-FDVKISVDTFR-------SE 88 (264)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESCCCST-------TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC-------HH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCC-------CCCcCCHHHHHHhhhhHhhhhcc-cCcccchhhhh-------HH
Confidence 6665555554 778999999997432222 22222 234556667777654 47889888542 35
Q ss_pred HHHHHHHcCCCEEE-Eecc
Q 023070 95 YAKMLEDAGCSLLA-VHGR 112 (287)
Q Consensus 95 ~a~~l~~~G~~~I~-vh~r 112 (287)
.++.+.++|++.|- |++.
T Consensus 89 Va~~al~~Ga~iINDVs~g 107 (264)
T d1ad1a_ 89 VAEACLKLGVDIINDQWAG 107 (264)
T ss_dssp HHHHHHHTTCCEEEETTTT
T ss_pred HHHHHHhcCCcEeeccccc
Confidence 56677788888773 5443
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=89.10 E-value=0.45 Score=39.60 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...+.++.+.+.|++.|.+-|.+.+..... ..--.+.++.+.+.+ ++||++.-+=.|.+++.+.. ++.|+|
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls-~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad 99 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQS-LSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 99 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSC-HHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeEccchhhCC-HHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCc
Confidence 555677888889999999999987766532111 011123344444443 58988765555666665444 346999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
++|+.-..+..+
T Consensus 100 ~~~v~~p~~~~~ 111 (295)
T d1hl2a_ 100 AVSAVTPFYYPF 111 (295)
T ss_dssp EEEEECCCSSCC
T ss_pred eeeeeeccccCC
Confidence 999987776554
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.43 E-value=2.4 Score=33.15 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=83.4
Q ss_pred ecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-----C
Q 023070 15 FCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-----N 88 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-----~ 88 (287)
+.+++++.+.+.|+... .|+.+|.+|. + +.++.+++.++.|+........ .
T Consensus 27 ~~~~~~~~v~~~A~a~~~~Ga~~i~~~~-------------------~----~~~~~ir~~~~~~~~~~~~~~~~~~~~~ 83 (230)
T d1yxya1 27 LYSETGGIMPLMAKAAQEAGAVGIRANS-------------------V----RDIKEIQAITDLPIIGIIKKDYPPQEPF 83 (230)
T ss_dssp TCCTTCCSHHHHHHHHHHHTCSEEEEES-------------------H----HHHHHHHTTCCSCEEEECBCCCTTSCCC
T ss_pred ccCCChHHHHHHHHHHHHCCCeEEEecC-------------------h----hhHHHHHhhhhcchhhhhcccCCcceee
Confidence 56778888888887654 4899999872 1 3355677778888766554321 1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.....+....+...|++.+.++......... ..-++.++.++.....+++. +++.|.+++..+.+ .|+|.+.++
T Consensus 84 ~~~~~~~~~~~~~~gad~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~-~~v~t~~~a~~a~~-~Gad~i~~~ 157 (230)
T d1yxya1 84 ITATMTEVDQLAALNIAVIAMDCTKRDRHDG---LDIASFIRQVKEKYPNQLLM-ADISTFDEGLVAHQ-AGIDFVGTT 157 (230)
T ss_dssp BSCSHHHHHHHHTTTCSEEEEECCSSCCTTC---CCHHHHHHHHHHHCTTCEEE-EECSSHHHHHHHHH-TTCSEEECT
T ss_pred echhHHHHHHHHhcCCCEEEEecccccccch---hhHHHHHHHHHhcCCCceEe-cCCCCHHHHHHHHh-cCCCEEEee
Confidence 1223455667778999999887544322111 23467777777765544443 47999999998888 599999763
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=87.72 E-value=0.69 Score=34.25 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCC----HHHHHHHHHhcCccEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRH----MEDVQKCLEETGCEGVL 165 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s----~~da~~~l~~~gad~Vm 165 (287)
..++++.+.+.+++.|.++....... ..--+.+..+++. .++||++.|.+.+ +.+....+++.|+|.|.
T Consensus 43 ~e~iv~a~~~~~~d~v~lS~~~~~~~-----~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if 117 (137)
T d1ccwa_ 43 QELFIKAAIETKADAILVSSLYGQGE-----IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVY 117 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSSTHH-----HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHhcCCCEEEEeeccccch-----HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEE
Confidence 45677888899999999986543211 1111344555554 3699999888754 67777777767898874
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.58 E-value=3.3 Score=28.97 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE
Q 023070 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 62 ~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi 141 (287)
..+.+++..+-+..+.-|..= .+..++ .+.+.+...|.|.+--.-. +..-++.++++++..++|||
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a----~~~~ea---l~~~~~~~~dlillD~~mp-------~~~G~~~~~~i~~~~~~pvI 75 (117)
T d2a9pa1 10 KPISDIIKFNMTKEGYEVVTA----FNGREA---LEQFEAEQPDIIILDLMLP-------EIDGLEVAKTIRKTSSVPIL 75 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE----SSHHHH---HHHHHHHCCSEEEECSSCS-------SSCHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE----CCHHHH---HHHHHhcCCCEEEeccccC-------CCCccHHHHHHHhCCCCCEE
Confidence 344555555444445544422 133444 4455567788776642211 12337889999888889999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEE
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.-.+-.+.++..++++ .||+..+
T Consensus 76 ~lt~~~~~~~~~~a~~-~Ga~d~l 98 (117)
T d2a9pa1 76 MLSAKDSEFDKVIGLE-LGADDYV 98 (117)
T ss_dssp EEESCCSHHHHHHHHH-HTCSEEE
T ss_pred EEecCCCHHHHHHHHH-cCCCEEE
Confidence 8888889999999998 5888764
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=87.49 E-value=1.1 Score=38.60 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+.++.+.++|++.|++..-.... ..-.+.++.+++. .++||++ |+|-|++.++.+++ .|+|+|-+|
T Consensus 109 ~~~~~~~~~L~~ag~d~i~IDvAhG~~------~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~-aGaD~vkVG 180 (362)
T d1pvna1 109 RDFRERVPALVEAGADVLCIDSSDGFS------EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLAD-AGADFIKIG 180 (362)
T ss_dssp SSHHHHHHHHHHHTCSEEEECCSCCCB------HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred hhhHHHHHHHhhcCceEEeechhccch------hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHH-hCCcEEEec
Confidence 455667888999999999885221110 1123566666543 2466665 89999999999887 599999998
Q ss_pred hh
Q 023070 168 ES 169 (287)
Q Consensus 168 R~ 169 (287)
=|
T Consensus 181 IG 182 (362)
T d1pvna1 181 IG 182 (362)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=87.45 E-value=4.2 Score=31.73 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-C--CChhhHHH
Q 023070 19 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-F--PNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-g--~~~~~~~~ 94 (287)
-|.....+++.+. .|+|.+.+|.. |+ .+ .+++..+..+..+..=.-+ . ...++..+
T Consensus 58 IpnTv~~~v~~~~~~g~d~itvH~~-----------~G-----~~----~l~~a~~~~~~~~l~Vt~LtS~~~~~~~~~~ 117 (198)
T d1vqta1 58 IPSTVERSIKSWDHPAIIGFTVHSC-----------AG-----YE----SVERALSATDKHVFVVVKLTSMEGSLEDYMD 117 (198)
T ss_dssp CHHHHHHHHHHHCCTTEEEEEEEGG-----------GC-----HH----HHHHHHHHCSSEEEEECCCTTSCCCHHHHHH
T ss_pred ccHHHHHHHHHHhhccccEEEEEcc-----------Cc-----hh----hhhHhhhhccccceeEEEeeccccchHHHHH
Confidence 3566666666554 36888888842 21 12 2233323333322221112 1 23445666
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH---------HHHHHhcCccEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV---------QKCLEETGCEGVL 165 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da---------~~~l~~~gad~Vm 165 (287)
.+..+.+.|++.++. +. ....+++...-.++ .=||+ ++.- .+.+. .|||.+.
T Consensus 118 ~~~~l~~~g~~~vv~-~~---------------~~~~~~~~~~~~ii-tPGIr-~~~~~dDQkr~~t~~ai~-~GAd~iV 178 (198)
T d1vqta1 118 RIEKLNKLGCDFVLP-GP---------------WAKALREKIKGKIL-VPGIR-MEVKADDQKDVVTLEEMK-GIANFAV 178 (198)
T ss_dssp HHHHHHHHTCEEECC-HH---------------HHHHHTTTCCSCEE-ECCBC----------CCBCHHHHT-TTCSEEE
T ss_pred HHHHHHHhccCcccc-cc---------------hhhhhhhhcccccc-ccccc-cCCCCCCcccccCHHHHH-cCCCEEE
Confidence 677788899886532 10 12233333322222 34443 1111 12455 5999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
|||+.+..++
T Consensus 179 VGR~It~s~d 188 (198)
T d1vqta1 179 LGREIYLSEN 188 (198)
T ss_dssp ESHHHHTSSC
T ss_pred ECCcccCCCC
Confidence 9999987554
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=87.31 E-value=3.5 Score=33.81 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=65.1
Q ss_pred HHHHHHHHhhccCCcEEEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC---------------CccccHH
Q 023070 64 VKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---------------KFRADWN 127 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~---------------~~~~~~~ 127 (287)
+.++.+.+++.-...+..=+-.| ++.+.+.++++.+.++|+|.|-+-=-..++...+ ....-++
T Consensus 4 i~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~ 83 (267)
T d1qopa_ 4 YENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFE 83 (267)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhh
Confidence 45566666654444444444455 5778889999999999999998842222221111 0011256
Q ss_pred HHHHHHhhC-CCcEEEecCCCC-----HHHHHHHHHhcCccEEEEe
Q 023070 128 AIKAVKNAL-RIPVLANGNVRH-----MEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 128 ~i~~i~~~~-~ipVi~nGgI~s-----~~da~~~l~~~gad~VmiG 167 (287)
.++++++.. .+|++.-|-.+. .+...+.....|+||+.+-
T Consensus 84 ~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Gliip 129 (267)
T d1qopa_ 84 MLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA 129 (267)
T ss_dssp HHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred hhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceecc
Confidence 677777764 799998885432 2444444555799999984
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.26 E-value=1.9 Score=35.50 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=48.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+++...+-|+ ++++|+|.|||=.=+-.+.... -+.....+.+..+++.+++. +++|+|..+- .+.++
T Consensus 23 ~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~----is~~eE~~Rl~p~i~~~~~~-~~~iSIDT~~-------~~Va~ 90 (270)
T d1eyea_ 23 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATR----VDPAVETSRVIPVVKELAAQ-GITVSIDTMR-------ADVAR 90 (270)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECSC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCEe----eechhhcccccceeeeeccc-ceeechHhhh-------HHHHH
Confidence 5665555555 6788999999963222221111 12234556667777776554 6778887432 35678
Q ss_pred HHHHcCCCEEE-EeccC
Q 023070 98 MLEDAGCSLLA-VHGRT 113 (287)
Q Consensus 98 ~l~~~G~~~I~-vh~rt 113 (287)
.+.++|++.|- |+|..
T Consensus 91 ~al~~Ga~iINDvsg~~ 107 (270)
T d1eyea_ 91 AALQNGAQMVNDVSGGR 107 (270)
T ss_dssp HHHHTTCCEEEETTTTS
T ss_pred HHHhcCCeEEEeccccc
Confidence 88889999884 66554
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.92 E-value=6.6 Score=31.70 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++++ ..+.|+++|.|- |-. .+ + .-+++.+..+++.+++||.--==|-++-++.+... .|||+|.+=-+
T Consensus 63 ~d~~~~a~-~~~~gA~aiSVL--Td~-~~-F--~Gs~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~-~GADaiLLI~~ 134 (247)
T d1a53a_ 63 RDPIEYSK-FMERYAVGLSIL--TEE-KY-F--NGSYETLRKIASSVSIPILMKDFIVKESQIDDAYN-LGADTVLLIVK 134 (247)
T ss_dssp CCHHHHHH-HHTTTCSEEEEE--CCC-TT-T--CCCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-HTCSEEEEEGG
T ss_pred cCHHHHHH-HHHhCCCeEEEe--cCc-cc-c--ccchHHHHHHHhccccceeecccccChHHHHHHHH-hhcchhhhhhh
Confidence 35677775 556899999774 111 11 2 23678899999999999999888999999999998 59999987555
Q ss_pred hh
Q 023070 170 LL 171 (287)
Q Consensus 170 ~l 171 (287)
++
T Consensus 135 ~L 136 (247)
T d1a53a_ 135 IL 136 (247)
T ss_dssp GS
T ss_pred hc
Confidence 54
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.92 E-value=0.13 Score=42.70 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=34.7
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++-+ ||+ |.+|
T Consensus 210 ~~~iLYGGSV~-~~N~~~i~~~~~vDG~LVGgASL-~~~-F~~I 250 (257)
T d1mo0a_ 210 ATRIIYGGSVT-ADNAAELGKKPDIDGFLVGGASL-KPD-FVKI 250 (257)
T ss_dssp HSCEEEESSCC-TTTHHHHTTSTTCCEEEESGGGG-STH-HHHH
T ss_pred cccEEeeCCcC-HHHHHHHhcCCCCCeEEeehHhC-ChH-HHHH
Confidence 47899988885 68899999878999999999999 588 6655
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=6.9 Score=31.84 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=88.6
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC--C
Q 023070 12 FVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF--P 87 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g--~ 87 (287)
+++|...|... |++++ .|+|.|=+ |-...++..| +-+.+--..+....-.++|++.. +.-+.+.+..+ .
T Consensus 17 i~~lTayD~~~----A~~~~~agvDiiLV--GDSlgmv~~G-~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~ 89 (262)
T d1m3ua_ 17 FATITAYDYSF----AKLFADEGLNVMLV--GDSLGMTVQG-HDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA 89 (262)
T ss_dssp EEEEECCSHHH----HHHHHHHTCCEEEE--CTTHHHHTTC-CSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred EEEEEcCCHHH----HHHHHHCCCCEEEE--cCcHHhcccC-CCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence 56777777543 55554 47787655 3333333333 34455556777777788887766 34455666553 3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe-----------cCC----CCHHHH
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-----------GNV----RHMEDV 152 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n-----------GgI----~s~~da 152 (287)
+.++++..+.++.+.|+|+|-+-|. ....+.|+.+.+. +|||++- ||. +|.+++
T Consensus 90 ~~~~a~~~a~~l~~~GAdaVKlEgg----------~~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea 158 (262)
T d1m3ua_ 90 TPEQAFENAATVMRAGANMVKIEGG----------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG 158 (262)
T ss_dssp SHHHHHHHHHHHHHTTCSEEECCCS----------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHH
T ss_pred hhHHHHHHHHHHHhcCCcEEEeccc----------hhHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCccccCccHHHH
Confidence 4567778888888999999977543 2335778888765 8999874 442 566777
Q ss_pred HHHH------HhcCccEEEE
Q 023070 153 QKCL------EETGCEGVLS 166 (287)
Q Consensus 153 ~~~l------~~~gad~Vmi 166 (287)
.+++ ++.||.++.+
T Consensus 159 ~~l~~~a~~le~AGaf~ivl 178 (262)
T d1m3ua_ 159 DQLLSDALALEAAGAQLLVL 178 (262)
T ss_dssp HHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhhcceEEEE
Confidence 6554 4458888765
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=1.4 Score=35.30 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=76.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CC-CEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-YC-DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~-d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.|+.+|+.+.+.+.+.+-|+.+.. +- -.|-|-+ . ..-.+.++.+.+ -++++.+=.
T Consensus 52 ~~~~is~ev~~~~~~~mi~~A~~l~~~~~nv~IKIP~----t---------------~~g~~ai~~L~~-~Gi~vn~Ta- 110 (220)
T d1l6wa_ 52 GQGRLFAQVMATTAEGMVNDALKLRSIIADIVVKVPV----T---------------AEGLAAIKMLKA-EGIPTLGTA- 110 (220)
T ss_dssp TCSEEEEECCCSSHHHHHHHHHHHHHHSTTCEEEEEC----S---------------HHHHHHHHHHHH-HTCCEEEEE-
T ss_pred cCCeEEeEEeeehhhhhHHHHHHHHHhccccEEEeec----c---------------ccccchhhhhhh-cccchhhhh-
Confidence 46789999999999998886664432 21 2333322 1 011333344432 245554331
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHh
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-.+... +..+.++|++++... ||..+. + ...++.++++.+. .+. -|..+.+++.+++.++..
T Consensus 111 -vfs~~Q----a~~Aa~aga~yvspy~gR~~d~--g---~dg~~~i~~~~~~~~~~~~~t-kIl~AS~R~~~~v~~~~~- 178 (220)
T d1l6wa_ 111 -VYGAAQ----GLLSALAGAEYVAPYVNRIDAQ--G---GSGIQTVTDLHQLLKMHAPQA-KVLAASFKTPRQALDCLL- 178 (220)
T ss_dssp -ECSHHH----HHHHHHHTCSEEEEBHHHHHHT--T---SCHHHHHHHHHHHHHHHCTTC-EEEEBCCSSHHHHHHHHH-
T ss_pred -cccHHH----HHHhhhcCCcEEeeeeeehhhc--c---cCChHHHHHHHHHHHhcCCCc-eEeehhcCCHHHHHHHHH-
Confidence 123333 334557899999664 665432 1 1234455444332 233 455699999999999998
Q ss_pred cCccEEEEehhhh
Q 023070 159 TGCEGVLSAESLL 171 (287)
Q Consensus 159 ~gad~VmiGR~~l 171 (287)
.|||.|-+.-.++
T Consensus 179 ~G~d~iTip~~v~ 191 (220)
T d1l6wa_ 179 AGCESITLPLDVA 191 (220)
T ss_dssp TTCSEEEECHHHH
T ss_pred cCCCEEEcCHHHH
Confidence 5999999874443
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=86.72 E-value=1.5 Score=36.57 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh---CC
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---LR 137 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~---~~ 137 (287)
.+.+..++..+.+..++||.+-+-= ....+.++...++|.+.+-+-+-.. +..-|....+++.+. .+
T Consensus 58 ~~~~~~~~~~~a~~~~vpV~lHlDH----~~~~e~i~~ai~~GftSVMiD~S~l------p~eeNi~~t~~vv~~ah~~g 127 (284)
T d1gvfa_ 58 LEEIYALCSAYSTTYNMPLALHLDH----HESLDDIRRKVHAGVRSAMIDGSHF------PFAENVKLVKSVVDFCHSQD 127 (284)
T ss_dssp HHHHHHHHHHHHHHTTSCBEEEEEE----ECCHHHHHHHHHTTCCEEEECCTTS------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCeEEeeecc----ccchHHHHHHHhcCCCeEEEECCCC------CHHHHHHHHHHHHHHHHhhc
Confidence 5777888888888889999887533 3346678888899999887754422 123455555555442 34
Q ss_pred CcEEEe----c-------------CCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 138 IPVLAN----G-------------NVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 138 ipVi~n----G-------------gI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++|-+- | ..++|+++.++.+.||+|.+.++=|-
T Consensus 128 v~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt 177 (284)
T d1gvfa_ 128 CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT 177 (284)
T ss_dssp CEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSC
T ss_pred cceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCc
Confidence 554321 1 24899999999999999998776543
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=86.70 E-value=0.16 Score=42.02 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=35.2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++.+ +|. |.++
T Consensus 204 ~i~ilYGGSV~-~~N~~~i~~~~~vdG~LVG~ASl-~~~-F~~I 244 (249)
T d1n55a_ 204 KLRILYGGSVN-AANAATLYAKPDINGFLVGGASL-KPE-FRDI 244 (249)
T ss_dssp HCEEEEESSCC-TTTHHHHHTSTTCCEEEESGGGG-STT-HHHH
T ss_pred cccEEEcCCCC-HhHHHHHhcCCCCCeEEeehhhc-CHH-HHHH
Confidence 48999999995 59999999888999999999999 488 6554
|
| >d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Aquifex aeolicus [TaxId: 63363]
Probab=86.52 E-value=3.4 Score=33.67 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=44.5
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccC
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT 113 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt 113 (287)
.-|+.++++++++... ...+.||.+|-..+.+..+....++.+...|.+.+.+..|.
T Consensus 98 qIGAr~~~~~~ll~~a-----~~~~~pV~~K~g~~~~~~~~~~a~e~~~~~G~~~v~~~eRg 154 (263)
T d2a21a1 98 QIPAFLCRQTDLLLAA-----AKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERG 154 (263)
T ss_dssp EECGGGTTCHHHHHHH-----HTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECC
T ss_pred eehhhhccChHhHhhh-----hccCCcccccccccCchhhhhhhhHHHHhCCCceEEeeccc
Confidence 4578888888876544 23589999998887788888899999999999887665553
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.38 E-value=4 Score=28.71 Aligned_cols=91 Identities=8% Similarity=0.067 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcE
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 140 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipV 140 (287)
-....+.+..+-+..+.-|..- .+.. +..+.+.+.-.+.|.+--.-.. ..-++.++.+++..++||
T Consensus 11 d~~~~~~l~~~L~~~g~~v~~a----~~~~---~al~~l~~~~~dlii~D~~mp~-------~~G~~~~~~~r~~~~~pi 76 (121)
T d1xhfa1 11 ELVTRNTLKSIFEAEGYDVFEA----TDGA---EMHQILSEYDINLVIMDINLPG-------KNGLLLARELREQANVAL 76 (121)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEE----SSHH---HHHHHHHHSCCSEEEECSSCSS-------SCHHHHHHHHHHHCCCEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEE----CChH---HHHHHHHhcCCCEEEeecccCC-------ccCcHHHHHHHhcCCCcE
Confidence 3344455555444445444322 1333 3445556777887777532211 233688888888889999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|.-.+-.+.++..++++ .|++..+.
T Consensus 77 i~lt~~~~~~~~~~a~~-~Ga~dyl~ 101 (121)
T d1xhfa1 77 MFLTGRDNEVDKILGLE-IGADDYIT 101 (121)
T ss_dssp EEEESCCSHHHHHHHHH-HTCSEEEE
T ss_pred EEEECCCCHHHHHHHHH-cCCCEEEe
Confidence 99988999999999998 48888654
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=86.11 E-value=3.7 Score=33.33 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=56.1
Q ss_pred cCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCCCChhhH
Q 023070 16 CANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDT 92 (287)
Q Consensus 16 ~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g~~~~~~ 92 (287)
...+++.+.+.++.+.+ |+|.|.|- |-+|+ -.|+.+.++++.+++... +++.+= ...+...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~I~l~----------DT~G~---~~P~~v~~~v~~l~~~~~~~~~i~~H--~Hn~~g~a 207 (289)
T d1nvma2 143 HMIPAEKLAEQGKLMESYGATCIYMA----------DSGGA---MSMNDIRDRMRAFKAVLKPETQVGMH--AHHNLSLG 207 (289)
T ss_dssp TSSCHHHHHHHHHHHHHHTCSEEEEE----------CTTCC---CCHHHHHHHHHHHHHHSCTTSEEEEE--CBCTTSCH
T ss_pred cccCchhhhHHHHhhccccceeeeec----------chhhc---ccchhHHHHHHHHHHHhcccccceee--echHHHHH
Confidence 34688888888886654 88987774 44555 379999999999988763 555554 34454455
Q ss_pred HHHHHHHHHcCCCEEEEe
Q 023070 93 IKYAKMLEDAGCSLLAVH 110 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh 110 (287)
..-+....++|++.|..+
T Consensus 208 ~an~l~A~~~G~~~id~s 225 (289)
T d1nvma2 208 VANSIVAVEEGCDRVDAS 225 (289)
T ss_dssp HHHHHHHHHTTCCEEEEB
T ss_pred HHHHHHHHHhCCcEeecc
Confidence 555556678999998664
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=85.47 E-value=1.1 Score=37.32 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=46.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+++...+.|+ ++++|+|.|||-.=+-.+... --+.....+.+.-+++++++..+++|||..+- .+.|+
T Consensus 36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~----~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~~-------~eVa~ 104 (282)
T d1ajza_ 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAA----EVSVEEELQRVIPVVEAIAQRFEVWISVDTSK-------PEVIR 104 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCC----CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC-------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCcccccccc----CCcHHHHHHHHHHHHHHHhhcccceEEEEecC-------hHHHH
Confidence 4555555554 677899999996322222110 11222345677788888887778889998543 23455
Q ss_pred HHHHcCCCEE
Q 023070 98 MLEDAGCSLL 107 (287)
Q Consensus 98 ~l~~~G~~~I 107 (287)
.+.++|++.|
T Consensus 105 ~al~~Ga~iI 114 (282)
T d1ajza_ 105 ESAKVGAHII 114 (282)
T ss_dssp HHHHTTCCEE
T ss_pred HHHhcCceEE
Confidence 5555666555
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=85.42 E-value=0.21 Score=41.23 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=35.1
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++-+. |. |.++
T Consensus 204 ~~~ilYGGSV~-~~N~~~i~~~~~vDG~LVGgASl~-~e-F~~I 244 (249)
T d1kv5a_ 204 ELRILYGGSVN-GKNARTLYQQRDVNGFLVGGASLK-PE-FVDI 244 (249)
T ss_dssp HCCEEEESSCC-TTTHHHHHTSTTCCEEEESGGGGS-TT-HHHH
T ss_pred CCcEEEcCCCC-HhHHHHHhcCCCCCEEEechHhcC-HH-HHHH
Confidence 48999999995 699999998889999999999995 88 6554
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=85.40 E-value=0.87 Score=37.71 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHH-HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 88 NLQDTIKYAKMLE-DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~-~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
+.+...+.++.+. +.|++.|.+-|-+.+.... +..-..+.++.+.+.. ++||++.=+=.+.+++.+.. ++.|+
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~L-s~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Ga 100 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFML-STEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGS-CHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECccCcchhhC-CHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCC
Confidence 4455667777765 4599999997776553211 1011123344444433 58988665555667666543 34699
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+....+..|.
T Consensus 101 d~i~~~pP~~~~~s 114 (293)
T d1f74a_ 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEECCCCCSSCCC
T ss_pred CEeeccCccccccc
Confidence 99999888775443
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.72 E-value=0.22 Score=41.05 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=35.3
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++-+. |. |.+|
T Consensus 201 ~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVGgASL~-~e-F~~I 241 (246)
T d1r2ra_ 201 STRIIYGGSVT-GATCKELASQPDVDGFLVGGASLK-PE-FVDI 241 (246)
T ss_dssp HCCEEECSCCC-TTTHHHHHTSTTCCEEEESGGGGS-TH-HHHH
T ss_pred cccEEecCCCC-HHHHHHHhcCCCCCeEEeehhhCC-HH-HHHH
Confidence 48999999885 699999998889999999999994 88 7655
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.61 E-value=5 Score=28.22 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=58.1
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LR 137 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ 137 (287)
.|-..+.+.++.+-+..+..|..- .+.. +..+.+.+...+.|.+.-.-. +..-++.++++++. ..
T Consensus 10 DDd~~~~~~l~~~L~~~g~~v~~a----~~~~---~a~~~l~~~~~dlii~D~~mp-------~~~G~el~~~l~~~~~~ 75 (123)
T d1krwa_ 10 DDDSSIRWVLERALAGAGLTCTTF----ENGN---EVLAALASKTPDVLLSDIRMP-------GMDGLALLKQIKQRHPM 75 (123)
T ss_dssp SSSHHHHHHHHHHHHHTTCEEEEE----SSSH---HHHHHHTTCCCSEEEECCSSS-------SSTTHHHHHHHHHHSSS
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEe----CCHH---HHHHHHHhCCCCEEEehhhcC-------CchHHHHHHHHHHhCCC
Confidence 444455666666544555554432 1223 334455566788776653321 12346788888765 47
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+|||.-.+..+.+++.++++. |++..
T Consensus 76 ~piI~~t~~~~~~~~~~a~~~-Ga~dy 101 (123)
T d1krwa_ 76 LPVIIMTAHSDLDAAVSAYQQ-GAFDY 101 (123)
T ss_dssp CCEEESCCCSCHHHHHHHHHH-TEEEE
T ss_pred CeEEEEecCCCHHHHHHHHHc-CCCeE
Confidence 999999999999999999984 77664
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.60 E-value=4.9 Score=28.10 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
.|-....+++..+-+..+.-|..- .+.+++. +.+.+...+.|.+--.-. +..-++.++++++...+
T Consensus 7 DDd~~~~~~l~~~L~~~g~~v~~a----~~~~eal---~~l~~~~~dliilD~~mP-------~~~G~e~~~~ir~~~~~ 72 (119)
T d1zh2a1 7 EDEQAIRRFLRTALEGDGMRVFEA----ETLQRGL---LEAATRKPDLIILDLGLP-------DGDGIEFIRDLRQWSAV 72 (119)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEE----SSHHHHH---HHHHHHCCSEEEEESEET-------TEEHHHHHHHHHTTCCC
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEe----CCHHHHH---HHHHhcCCCEEEeccccC-------CCCCchHHHHHHhccCC
Confidence 344455666665544455544322 2334444 445566788776653221 12347889999988889
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|||.--+-.+.++..++++. ||+..+.
T Consensus 73 piI~lt~~~~~~~~~~a~~~-Ga~dyl~ 99 (119)
T d1zh2a1 73 PVIVLSARSEESDKIAALDA-GADDYLS 99 (119)
T ss_dssp CEEEEESCCSHHHHHHHHHH-TCSEEEE
T ss_pred cEEEEeccCCHHHHHHHHHc-CCCEEEE
Confidence 99998889999999999984 8887643
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.12 E-value=9.1 Score=30.87 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=54.1
Q ss_pred CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC---------ChhhHHHHHHHHHHc
Q 023070 32 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---------NLQDTIKYAKMLEDA 102 (287)
Q Consensus 32 ~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~---------~~~~~~~~a~~l~~~ 102 (287)
-|||.|||+-| + +.-..+.-.++++.+++. ++ .|+.-.|. +.++.++.++...++
T Consensus 97 lGf~~iEiSdg------------~-~~i~~~~~~~~I~~~~~~-G~--~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Lea 160 (251)
T d1qwga_ 97 LGFEAVEISDG------------S-SDISLEERNNAIKRAKDN-GF--MVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA 160 (251)
T ss_dssp HTCCEEEECCS------------S-SCCCHHHHHHHHHHHHHT-TC--EEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCC------------c-cCCCHHHHHHHHHHHHhC-CC--EEeecccCCCCCCccccCHHHHHHHHHHHHHC
Confidence 39999999843 2 122334445666655443 22 22222232 345667788888999
Q ss_pred CCCEEEEeccCCC---CcCCCCccccHHHHHHHHhhCC
Q 023070 103 GCSLLAVHGRTRD---EKDGKKFRADWNAIKAVKNALR 137 (287)
Q Consensus 103 G~~~I~vh~rt~~---~~~~~~~~~~~~~i~~i~~~~~ 137 (287)
|++.|++-+|... +-....+...++.+..+.+.++
T Consensus 161 GA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~ 198 (251)
T d1qwga_ 161 GADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVD 198 (251)
T ss_dssp TCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSC
T ss_pred CCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCC
Confidence 9999999888642 1222234566777777776554
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=83.34 E-value=0.28 Score=40.37 Aligned_cols=40 Identities=23% Similarity=0.468 Sum_probs=34.0
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhc
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
++||++.|.|. ++.+.+++...++||+.||++.+. +. |.+
T Consensus 201 ~i~ilYGGSV~-~~N~~~i~~~~~idG~LVG~ASL~-~~-F~~ 240 (246)
T d1o5xa_ 201 QIRILYGGSVN-TENCSSLIQQEDIDGFLVGNASLK-ES-FVD 240 (246)
T ss_dssp HSEEEECSCCC-TTTHHHHHTSTTCCEEEECGGGGS-TT-HHH
T ss_pred cccEEEeCCCC-HhHHHHHhcCCCCCEEEeecccCC-HH-HHH
Confidence 48999999995 599999998889999999999995 66 443
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=83.22 E-value=6.4 Score=30.56 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcc-CCcEEEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCCc---------CCCCccccHHHHHHH
Q 023070 64 VKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------DGKKFRADWNAIKAV 132 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---------~~~~~~~~~~~i~~i 132 (287)
+.+..+.+...+ ++||++.+- |+. ..+....++.++++|+.+|.+-.+...-. .......+.+.+-..
T Consensus 73 ~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rtv~~~~~aG~agI~~~pk~g~~~g~~~~~~e~a~~~~~~~~d~liiA 151 (197)
T d2p10a1 73 VVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEA 151 (197)
T ss_dssp HHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCceEEecC-CCCcchhHHHHHHHHHHcCCeEEeccccccCccchhhhhHHHHHHHhccCccHHHHH
Confidence 445555555544 799999997 543 55788889999999999998743321100 000000111222222
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+. +- ++..|=-...+.++.+.+ .|||.|.+
T Consensus 152 Rt--da-~~~~g~~~Ai~Ra~ay~e-AGAD~i~~ 181 (197)
T d2p10a1 152 HK--LD-LLTTPYVFSPEDAVAMAK-AGADILVC 181 (197)
T ss_dssp HH--TT-CEECCEECSHHHHHHHHH-HTCSEEEE
T ss_pred HH--hh-hhhccHHHHHHHHHHHHH-cCCCEEEE
Confidence 22 21 123465688899998887 59999987
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=83.11 E-value=2.9 Score=34.11 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+..++++ ..+.|+++|.|..-.. + + .-+++.+..+++.+++||.--==|-++-++.+... .|||+|.+=-++
T Consensus 69 ~p~~~a~-~~~~gA~aiSVLTe~~---~-F--~Gs~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~-~GADavLLI~~~ 140 (254)
T d1piia2 69 DPARIAA-IYKHYASAISVLTDEK---Y-F--QGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARY-YQADACLLMLSV 140 (254)
T ss_dssp CHHHHHH-HHTTTCSEEEEECCST---T-T--CCCTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEETTT
T ss_pred hhHHHHH-HHHhccCceEEecccc---c-C--CCCHHHHHHHHhccccccchhcccCcHHHHHHHHh-hccchhhhhHhh
Confidence 5566665 7789999997752211 1 2 13456788889999999988888999999999998 699999875555
Q ss_pred h
Q 023070 171 L 171 (287)
Q Consensus 171 l 171 (287)
+
T Consensus 141 L 141 (254)
T d1piia2 141 L 141 (254)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=82.52 E-value=3.8 Score=32.45 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=85.8
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEE--EEecc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYV--DINLG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~I--diN~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.++++|...|...+.+-.+.+ +.|+|.| ||.-| +|.. .+ -.+.++.+++..+.|+.+-+-
T Consensus 3 kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~-----t~----------~~~~i~~i~~~~~~~~dvHLM 67 (220)
T d1h1ya_ 3 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL-----TI----------GAPVIQSLRKHTKAYLDCHLM 67 (220)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CB----------CHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc-----cc----------CchhhhhhhhhcchhhhhHHH
Confidence 478899999999999999866 5588864 44322 3331 11 235567777777888877653
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHh-cCc
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEE-TGC 161 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~-~ga 161 (287)
. .+..++.+.+.++|++.|++|.-... .++ ..+..+++. .+.-|..|-+- +.+++...+.. ..+
T Consensus 68 v----~~p~~~i~~~~~~g~~~I~~H~E~~~--------~~~~~~i~~i~~~g~~~Glal~p~t-~~~~~~~~l~~~~~~ 134 (220)
T d1h1ya_ 68 V----TNPSDYVEPLAKAGASGFTFHIEVSR--------DNWQELIQSIKAKGMRPGVSLRPGT-PVEEVFPLVEAENPV 134 (220)
T ss_dssp S----SCGGGGHHHHHHHTCSEEEEEGGGCT--------TTHHHHHHHHHHTTCEEEEEECTTS-CGGGGHHHHHSSSCC
T ss_pred h----cchhhhhHHhhhcccceeeecccccc--------hhHHHHHHHHHHcCCCcceeecccc-chhHHHHHHhccccc
Confidence 3 23335567788899999999965321 123 456666655 33445555443 55666666653 247
Q ss_pred cEEEEehhhhhCccc
Q 023070 162 EGVLSAESLLENPAL 176 (287)
Q Consensus 162 d~VmiGR~~l~nP~l 176 (287)
|.|++- -.+|..
T Consensus 135 d~vlim---~v~PG~ 146 (220)
T d1h1ya_ 135 ELVLVM---TVEPGF 146 (220)
T ss_dssp SEEEEE---SSCTTC
T ss_pred ceEEEE---ecCCCC
Confidence 888773 346664
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=82.30 E-value=2.2 Score=36.10 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCCEEEEeccC--------------CCCcCCCCc----cccHHHHHHHHhhCCCcEEE--------ecC
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRT--------------RDEKDGKKF----RADWNAIKAVKNALRIPVLA--------NGN 145 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt--------------~~~~~~~~~----~~~~~~i~~i~~~~~ipVi~--------nGg 145 (287)
..+-|+++.++|+|+|.||+-. +...++++. +.-++.++.+++.++-|+++ .||
T Consensus 145 f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g 224 (337)
T d1z41a1 145 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKG 224 (337)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTS
T ss_pred HHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCc
Confidence 3456777889999999999631 112222211 11256788888888766653 223
Q ss_pred CCCHHHHH---HHHHhcCccEEEEehhhhhCcc
Q 023070 146 VRHMEDVQ---KCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 146 I~s~~da~---~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+.++.. +.|++.|+|.+-+..+.+..|.
T Consensus 225 -~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~ 256 (337)
T d1z41a1 225 -LDIADHIGFAKWMKEQGVDLIDCSSGALVHAD 256 (337)
T ss_dssp -CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC
T ss_pred -cchhhhHHHHHHHHHcCCcccccccccccccc
Confidence 3455554 4456689999988877665543
|
| >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.73 E-value=0.29 Score=40.34 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=34.7
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++.+ +|.-|.++
T Consensus 204 ~i~ilYGGSV~-~~N~~~i~~~~~vDG~LVG~ASl-~~~~F~~I 245 (251)
T d2btma_ 204 AIRIQYGGSVK-PDNIRDFLAQQQIDGALVGGASL-EPASFLQL 245 (251)
T ss_dssp TSEEEEESSCC-TTTHHHHHTSTTCCEEEESGGGS-SHHHHHHH
T ss_pred cCcEEeeCCCC-HhHHHHHhcCCCCCEEEechHhC-CHHHHHHH
Confidence 58999999995 69999999888999999998876 66555544
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=81.34 E-value=4.1 Score=34.05 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=80.7
Q ss_pred EEEecCCCHHHHHHHHHHHcC-CCC-EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 12 FVQFCANDPEILLNAARRVEP-YCD-YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~-g~d-~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+..+...+.+.+....+.+++ ... .|.+.-++ . .|++ ..+...+..+.+..++||.+-+--+
T Consensus 19 V~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~-----~--~~~~------~~~~~~~~~~a~~~~vpv~lHlDH~--- 82 (305)
T d1rvga_ 19 VGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGA-----M--KYGG------RALTLMAVELAKEARVPVAVHLDHG--- 82 (305)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHH-----H--HHHH------HHHHHHHHHHHHHCSSCEEEEEEEE---
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCEEEECCccH-----H--hHcc------HHHHHHHHHHHhccCCcEEEeehhc---
Confidence 445555666666555555443 333 34443111 1 1232 2233456666667789998875333
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hCCCcEEEe----c-------------CCCCH
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLAN----G-------------NVRHM 149 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~n----G-------------gI~s~ 149 (287)
...+.++...++|.+.+-+-|-.. +...|+...+++.+ ..+++|-+- | -.++|
T Consensus 83 -~~~e~i~~ai~~GftSVMiDgS~l------~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~p 155 (305)
T d1rvga_ 83 -SSYESVLRALRAGFTSVMIDKSHE------DFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNP 155 (305)
T ss_dssp -CSHHHHHHHHHTTCSEEEECCTTS------CHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCH
T ss_pred -cChhhhHHHHhcCCceEEEcCccc------cHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCH
Confidence 345677888899999987765422 22345555555544 245555421 1 14689
Q ss_pred HHHHHHHHhcCccEEEEehhh
Q 023070 150 EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~ 170 (287)
+++.++.+.||+|...++=|-
T Consensus 156 eea~~Fv~~TgvD~LAvaiGn 176 (305)
T d1rvga_ 156 EEARIFMERTGADYLAVAIGT 176 (305)
T ss_dssp HHHHHHHHHHCCSEEEECSSC
T ss_pred HHHHHHHHHhCccHhhhhhhh
Confidence 999999999999998876543
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=81.18 E-value=4.5 Score=31.54 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=50.7
Q ss_pred HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC
Q 023070 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg 145 (287)
++++.+++. +++|...+.+..-.......++.+.+.|+++++||+-.. .+.++.+.+..+..+++.--
T Consensus 37 ~~i~~l~~~-~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G-----------~~~l~~a~~~~~~~~l~Vt~ 104 (198)
T d1vqta1 37 KIFDELAKR-NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAG-----------YESVERALSATDKHVFVVVK 104 (198)
T ss_dssp HHHHHHHTT-TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGC-----------HHHHHHHHHHCSSEEEEECC
T ss_pred HHHHHHHHC-CCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccCc-----------hhhhhHhhhhccccceeEEE
Confidence 344444443 677776655543333334556677889999999996421 34566666665554554333
Q ss_pred CCC----HHH----HHHHHHhcCccEEEEe
Q 023070 146 VRH----MED----VQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s----~~d----a~~~l~~~gad~VmiG 167 (287)
..| .++ +.++. ..|+|+|..|
T Consensus 105 LtS~~~~~~~~~~~~~~l~-~~g~~~vv~~ 133 (198)
T d1vqta1 105 LTSMEGSLEDYMDRIEKLN-KLGCDFVLPG 133 (198)
T ss_dssp CTTSCCCHHHHHHHHHHHH-HHTCEEECCH
T ss_pred eeccccchHHHHHHHHHHH-HhccCccccc
Confidence 322 222 33333 4689988754
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=80.85 E-value=7.7 Score=27.71 Aligned_cols=92 Identities=12% Similarity=0.153 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRI 138 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~i 138 (287)
|-..+.+.++.+-+..+.-|..- .+..++ ...+.+...+.|.+.-.-.. ...++.++.+++. .++
T Consensus 8 Dd~~~~~~l~~~L~~~g~~v~~a----~~~~eA---l~~l~~~~~dlvilD~~mp~-------~~G~e~~~~lr~~~~~~ 73 (137)
T d1ny5a1 8 DDKVFRGLLEEYLSMKGIKVESA----ERGKEA---YKLLSEKHFNVVLLDLLLPD-------VNGLEILKWIKERSPET 73 (137)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEE----SSHHHH---HHHHHHSCCSEEEEESBCSS-------SBHHHHHHHHHHHCTTS
T ss_pred cCHHHHHHHHHHHHHCCCEEEEE----CCHHHH---HHHhhccccccchHHHhhhh-------hhHHHHHHHHHHhCCCC
Confidence 33444555555444445544422 133444 44555778998877633211 2346888888865 479
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|||.--+-.+.+.+.++++ .||+..+.
T Consensus 74 piI~lT~~~~~~~~~~a~~-~Ga~dyl~ 100 (137)
T d1ny5a1 74 EVIVITGHGTIKTAVEAMK-MGAYDFLT 100 (137)
T ss_dssp EEEEEEETTCHHHHHHHHT-TTCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHH-cCCCEEEe
Confidence 9998888899999999998 58887654
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=80.59 E-value=7.2 Score=27.20 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--- 136 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--- 136 (287)
|-....+++..+-+..+.-|..- .+..+++ +.+.+...+.|.+.-.-. +-.-++.++++++..
T Consensus 9 D~~~~~~~l~~~L~~~g~~v~~a----~~~~~al---~~~~~~~~dlil~D~~mp-------~~dG~el~~~ir~~~~~~ 74 (123)
T d1mb3a_ 9 DNELNMKLFHDLLEAQGYETLQT----REGLSAL---SIARENKPDLILMDIQLP-------EISGLEVTKWLKEDDDLA 74 (123)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE----SCHHHHH---HHHHHHCCSEEEEESBCS-------SSBHHHHHHHHHHSTTTT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE----CCHHHHH---HHHHhCCCCEEEEEeccC-------CCcHHHHHHHHHhCCCcC
Confidence 34445556665544555544322 1334444 445566788776652211 123468888888653
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
++|||.-.+..+.++..++++ .||++.+
T Consensus 75 ~iPii~lt~~~~~~~~~~~~~-~G~~~~l 102 (123)
T d1mb3a_ 75 HIPVVAVTAFAMKGDEERIRE-GGCEAYI 102 (123)
T ss_dssp TSCEEEEC------CHHHHHH-HTCSEEE
T ss_pred CCCeEEEEEecCHHHHHHHHH-cCCCEEE
Confidence 689998888888888888887 5898863
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=7 Score=27.11 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE
Q 023070 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 62 ~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi 141 (287)
....+++..+-+..+.-|..- .+..+..+.+.+...+.+.+.-.-.. ..-++.++.++....+|||
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~a-------~~~~~a~~~~~~~~~dliilD~~mp~-------~~g~~~~~~~~~~~~~piI 76 (120)
T d1zgza1 11 PVTQARLQSYFTQEGYTVSVT-------ASGAGLREIMQNQSVDLILLDINLPD-------ENGLMLTRALRERSTVGII 76 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-------SSHHHHHHHHHHSCCSEEEEESCCSS-------SCHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHhcCCCEEeeehhhcc-------chhHHHHHHHhccCCCeEE
Confidence 344555555444445544433 22334445666788888877533221 2336778888887889999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.-.+-.+.++..++++ .||+..+.
T Consensus 77 ~lt~~~~~~~~~~a~~-~Ga~dyl~ 100 (120)
T d1zgza1 77 LVTGRSDRIDRIVGLE-MGADDYVT 100 (120)
T ss_dssp EEESSCCHHHHHHHHH-HTCSEEEE
T ss_pred EEEccCCHHHHHHHHH-CCCCEEEE
Confidence 9888999999999998 58887754
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.54 E-value=0.19 Score=41.42 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++||++.|.|. ++.+.+++...++||+.||++-+ +|. |.+|
T Consensus 202 ~i~iLYGGSV~-~~N~~~i~~~~~iDG~LVGgASL-~~e-F~~I 242 (247)
T d1neya_ 202 ELRILYGGSAN-GSNAVTFKDKADVDGFLVGGASL-KPE-FVDI 242 (247)
T ss_dssp HCCEEEESSCC-TTTGGGGTTCTTCCEEEESGGGG-STH-HHHH
T ss_pred cCcEEEeCCCC-HHHHHHHhcCCCCCeEEeehHhC-ChH-HHHH
Confidence 48999988885 59999999888999999999998 488 6655
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=80.48 E-value=5.1 Score=30.77 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=80.4
Q ss_pred EEEEecCC----CHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 11 LFVQFCAN----DPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g~----~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.+|...+ +|+.+.++|+.... |+.+|.++.. +-++.+++..+.|+......
T Consensus 9 vs~Q~~~~~Pm~~~~~~a~~A~aa~~~Ga~~i~~~~~-----------------------~~~~~i~~~~~~~~~~~~~~ 65 (222)
T d1y0ea_ 9 VSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTK-----------------------EDILAIKETVDLPVIGIVKR 65 (222)
T ss_dssp EECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESH-----------------------HHHHHHHHHCCSCEEEECBC
T ss_pred EEEecCCCCCCCCcHHHHHHHHHHHHCCCeEEecCCH-----------------------HHHHHHHHhcCCccceeecc
Confidence 44577765 45788888876554 8888887622 22345556667776543322
Q ss_pred C-----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 F-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g-----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+ .......+..+.+.++|++.+.+......... ...++.++.+++.... ++..+++.+.+++.+..+ .|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~agad~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~v~~~~~t~~~a~~~~~-~g 139 (222)
T d1y0ea_ 66 DYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPK----ETLDELVSYIRTHAPN-VEIMADIATVEEAKNAAR-LG 139 (222)
T ss_dssp CCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSS----SCHHHHHHHHHHHCTT-SEEEEECSSHHHHHHHHH-TT
T ss_pred CCcchHHhhcccHHHHHhHHHcCCCEEEeecccccccc----chHHHHHHHHHHhCCc-eEEeecCCCHHHHHHHHH-cC
Confidence 1 12234456677788899999988755432111 2234566666665433 345677999999998887 59
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
+|++.++
T Consensus 140 ~d~i~~~ 146 (222)
T d1y0ea_ 140 FDYIGTT 146 (222)
T ss_dssp CSEEECT
T ss_pred CCeEEEe
Confidence 9998653
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.17 E-value=13 Score=29.90 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---CChhhHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g---~~~~~~~ 93 (287)
|-.+..+....+.+.+..|.+-+- +|++.+-..+.+.+.++-.++. ++++...=-+. .......
T Consensus 22 Glgl~~leD~Le~ag~yID~~K~g------------~Gt~~l~p~~~l~eKI~l~~~~-~V~v~~GGtlfE~a~~qg~~~ 88 (251)
T d1qwga_ 22 GLPPKFVEDYLKVCGDYIDFVKFG------------WGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSKGKFD 88 (251)
T ss_dssp SCCHHHHHHHHHHHGGGCSEEEEC------------TTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHhhhhheeEEEec------------CceeeecCHHHHHHHHHHHHHc-CCeEeCCcHHHHHHHHcCCHH
Confidence 456666666666666778888884 6777777788888888877654 56655431000 0011245
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhhCCCcEEEecCC--------CCHHH----HHHHHHhcC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLANGNV--------RHMED----VQKCLEETG 160 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~~~ipVi~nGgI--------~s~~d----a~~~l~~~g 160 (287)
++.+.+.+.|++.|-|+..+..-. ..++ ++|+.+++. ++-|+.-=|. .++++ +.+.|+ .|
T Consensus 89 ~y~~~~~~lGf~~iEiSdg~~~i~-----~~~~~~~I~~~~~~-G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~Le-aG 161 (251)
T d1qwga_ 89 EFLNECEKLGFEAVEISDGSSDIS-----LEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLD-AG 161 (251)
T ss_dssp HHHHHHHHHTCCEEEECCSSSCCC-----HHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHcCCCEEEEcCCccCCC-----HHHHHHHHHHHHhC-CCEEeecccCCCCCCccccCHHHHHHHHHHHHH-CC
Confidence 778888899999999987665321 1222 556666553 4445544333 34444 556677 59
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
|+.||+
T Consensus 162 A~~Vii 167 (251)
T d1qwga_ 162 ADYVII 167 (251)
T ss_dssp CSEEEE
T ss_pred CceeEe
Confidence 999999
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