Citrus Sinensis ID: 023313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Secondary Structure (PSIPRED)
cHHHHHccccEEEEEccccccHHHHHHccccccccccccccccccccHHHHHHHHcccccEEEEcccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEcccEEEccccccccccccccccEEEEEEEccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEccccccccHHHHccccccEEEEEEEEEEEEccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHccccccccccHHHccccHHHHEccccccccccccEccccHHHHHHHHHHHccccEEEEccccHHHHHHccEEEEEEEcccccccccEcccccccccHHHHHcccEEEEccccccccccccHHHHHHHHcccccccHHHHccccccHHcccccccccccccccccEEEEEEccccHHHHHHHHHccccEEEcccccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHcccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlerhllerpakigvganRAATAASFIEKygyvdprdcassqkncinpkvgshlksgkIGAVILDDGMQHWSLRRDLEIVMvnglmpwgnrkllplgplreplmaLKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSylfevgninskipltAVCNANVLCVSAIGSANAFVQSLqklgpcsvnrldfndhhsfQARDIEMIKKKLEELegkfnpkpivvvtekdydrdpeiLMHLEAYKVLVLCsklqiipcrgctEDSFKLLLKELVDVK
Flexible Loop (DISEMBL)
mlerhllerpakigvganraATAASFIEKYGYVDPRDCASSQKNCinpkvgshlksGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADliseqnlkdIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEelegkfnpkpivvvtEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Low Complexity Region (SEG)
MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIkkkleeleGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Disordered region (IsUnstruct)
************IGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELV***
Disordered Region (DISOPRED)
MLERH**ERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDV*
Disordered Region (DISEMBL)
MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Disordered Region (DISPRO)
*****LLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDRDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q8LEA0	395	Probable tetraacyldisacch	yes	no	0.992	0.713	0.580	9e-88
B8CZC3	384	Tetraacyldisaccharide 4'-	yes	no	0.616	0.455	0.350	6e-25
Q2IL55	378	Tetraacyldisaccharide 4'-	yes	no	0.623	0.468	0.329	3e-19
B2KC48	374	Tetraacyldisaccharide 4'-	yes	no	0.700	0.532	0.315	5e-19
B8JE66	379	Tetraacyldisaccharide 4'-	yes	no	0.616	0.461	0.333	9e-19
B4UHQ4	378	Tetraacyldisaccharide 4'-	yes	no	0.598	0.449	0.322	9e-19
A0KLY1	333	Tetraacyldisaccharide 4'-	yes	no	0.531	0.453	0.338	5e-17
Q2LVL1	374	Tetraacyldisaccharide 4'-	yes	no	0.602	0.457	0.324	1e-16
Q7UNW7	365	Tetraacyldisaccharide 4'-	yes	no	0.609	0.473	0.299	2e-16
Q8A6K1	380	Tetraacyldisaccharide 4'-	yes	no	0.623	0.465	0.308	8e-16

>sp|Q8LEA0|LPXK_ARATH Probable tetraacyldisaccharide 4'-kinase, mitochondrial OS=Arabidopsis thaliana GN=LPXK PE=2 SV=1

 Score =  323 bits (828), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 165/284 (58%), Positives = 208/284 (73%), Gaps = 2/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           MLERHL   P KIGVGANRAATAA F++KYG VD     S     ++ +      S KIG
Sbjct: 109 MLERHLRGGPVKIGVGANRAATAALFLDKYGCVDSSSLRSFFD--LHERAQVWTISEKIG 166

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            +ILDDGMQHWSL RDLEIVM+NGL PWGN  L+P GPLREPL+AL+RAD+AVVHH DLI
Sbjct: 167 CIILDDGMQHWSLSRDLEIVMLNGLNPWGNGHLMPHGPLREPLLALERADVAVVHHVDLI 226

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           ++Q+L+DIE  ++  KKS+ IF+++MVP YLF+V N  S + L A+  A+VLCVSAIGSA
Sbjct: 227 TKQSLRDIENMIQGFKKSIPIFYSKMVPKYLFDVKNARSHVALEALRCASVLCVSAIGSA 286

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           +AFV+S++  G   V+RLDF+DHH F+A D+E + ++ + LE K N KPI+VVTEKDYDR
Sbjct: 287 DAFVKSIEMTGAHYVDRLDFSDHHLFEAEDVETMSRRAKGLEHKSNCKPIIVVTEKDYDR 346

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL  L++Y VLVLCS+LQI P      DSF   L + +  K
Sbjct: 347 DPEILKCLDSYTVLVLCSELQITPILETDVDSFNYTLMKALAAK 390

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 3EC: 0

>sp|B8CZC3|LPXK_HALOH Tetraacyldisaccharide 4'-kinase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=lpxK PE=3 SV=1

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 16/191 (8%)

Query: 62  VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLIS 121
           +ILDDG QHW L+RD++IVM++GL P+G  +L+P G LREPL  LKRAD  V+  A  IS
Sbjct: 165 IILDDGFQHWQLKRDVDIVMIDGLKPFGQGRLIPRGFLREPLSGLKRADFFVISRAHHIS 224

Query: 122 EQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGN--------INSKIPLTAVCNANVLC 173
            + L++I+  +    ++  ++       YL E+          I+ K PL  +  A V+ 
Sbjct: 225 REKLQEIKDTLCQYNQNAVVYEATTSSVYLKELSVASLEMKSIIHKKRPLDELKGAKVIA 284

Query: 174 VSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVV 233
           V  +G+  +F + L+  G   +  L FNDHH ++  D + I     +         IV+ 
Sbjct: 285 VCGLGNPRSFYRDLEISGAEVIETLSFNDHHQYRPDDFDKIINLARQ-----KAIDIVIT 339

Query: 234 TEKD---YDRD 241
           TEKD   + RD
Sbjct: 340 TEKDAVKFSRD 350

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|Q2IL55|LPXK_ANADE Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lpxK PE=3 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 8/185 (4%)

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           A++LDDG QH +L RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  
Sbjct: 154 ALVLDDGFQHRALARDLDVVVLDASNPFGNGHLLPRGPNREPPSALRRAGLVWLSHADRA 213

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           + + L+ +    RD      +  +R  P+ L + G +     L A+    V  +S +   
Sbjct: 214 APERLEALRALARDATGRAPV-ESRHAPTALLD-GALREAGALEALRGRRVAALSGLARP 271

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
             F+++L+ LG        F DHH F A +++ + +     E   +    VV TEKD  R
Sbjct: 272 AGFLRTLEALGAEVALARAFPDHHRFTAGELDAVLR-----EAAASGCAWVVTTEKDAVR 326

Query: 241 -DPEI 244
            DP +
Sbjct: 327 LDPAL 331

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|B2KC48|LPXK_ELUMP Tetraacyldisaccharide 4'-kinase OS=Elusimicrobium minutum (strain Pei191) GN=lpxK PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 10/209 (4%)

Query: 54  LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
           LK  K   ++LDDG QH+ L+RD  IV+++   P+G  +LLP G LRE L  LKRA++ +
Sbjct: 146 LKRFKSQVLLLDDGFQHFRLKRDANIVLIDARNPFGGGQLLPYGTLREGLSGLKRANLVL 205

Query: 114 VHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLC 173
           + H++   ++  +DI+ ++R   + + I      P + F++ N + K+PL  +       
Sbjct: 206 LTHSNQADQRKKEDIKDQIRLQNEDIEILEAVHQPEHYFDICN-SVKVPLNHL-KGEAGV 263

Query: 174 VSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVV 233
            SAIG    F  +L+ LG   V    + DH  +   D+    K   +L G+ NP   +V 
Sbjct: 264 FSAIGEPGGFEDTLKDLGLKLVKVWRYPDHRRYTEEDL----KTFVDLAGE-NP---LVT 315

Query: 234 TEKDYDRDPEILMHLEAYKVLVLCSKLQI 262
           T KD+ + PE    +    V VL   ++I
Sbjct: 316 TFKDFVKFPENWRDILKKNVYVLSVSMKI 344

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Elusimicrobium minutum (strain Pei191) (taxid: 445932)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|B8JE66|LPXK_ANAD2 Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=lpxK PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           A++LDDG QH +L RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  
Sbjct: 154 ALVLDDGFQHRALARDLDVVVLDASNPFGNGHLLPRGPNREPRTALRRAGLVWLSHADRA 213

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           + + L+ +    RD      +  +R   + L + G +     L A+    V  +S +   
Sbjct: 214 APERLEALRALARDATGRAPV-ESRHAATALLD-GALREAGSLEALRGRRVAALSGLARP 271

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
             F+++L+ LG        F DHH F A ++E + +     +G       VV TEKD  R
Sbjct: 272 AGFLRTLEALGAEVALARAFPDHHRFTAGELEAVLR-----DGDAAGCAWVVTTEKDAVR 326

Query: 241 -DP 242
            DP
Sbjct: 327 LDP 329

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) (taxid: 455488)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|B4UHQ4|LPXK_ANASK Tetraacyldisaccharide 4'-kinase OS=Anaeromyxobacter sp. (strain K) GN=lpxK PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 7/177 (3%)

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           A++LDDG QH +L RDL++V+++   P+GN  LLP GP REP  AL+RA +  + HAD  
Sbjct: 154 ALVLDDGFQHRALARDLDVVVLDASNPFGNGHLLPRGPNREPRTALRRAGLVWLSHADRA 213

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           + + L+ +    RD      +  +R  P+ L + G +     L A+    V  +S +   
Sbjct: 214 APERLEALRRLARDATGRAPV-ESRHAPTALLD-GALREAGSLEALRGRRVAALSGLARP 271

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKD 237
             F+++L+ LG        F DHH F   ++E + +  +     +     VV TEKD
Sbjct: 272 AGFLRTLEALGAEVALARAFPDHHRFTGGELEAVLRDADAAGCAW-----VVTTEKD 323

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Anaeromyxobacter sp. (strain K) (taxid: 447217)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|A0KLY1|LPXK_AERHH Tetraacyldisaccharide 4'-kinase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=lpxK PE=3 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 32/183 (17%)

Query: 55  KSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVV 114
           +SG++  +I DDG+QH++L RD+E+V+V+G   +GN  LLP+GPLREP+  LKR D  + 
Sbjct: 136 QSGEVDIIITDDGLQHYALARDIELVVVDGARRFGNACLLPMGPLREPVTRLKRVDAIIC 195

Query: 115 HHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCV 174
           +  +          E  MR +           VP        +  + PL A  +  V  +
Sbjct: 196 NGGEPGRG------EYPMRLVAD---------VPR------RVRDEAPLAAPLSGPVDAL 234

Query: 175 SAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVT 234
           + IG    F  +L+ LG     R+ + DHH F  RD         EL G+F  KP+ ++T
Sbjct: 235 AGIGHPPRFFATLEGLGYQLDQRVAYGDHHPFD-RD---------ELVGRFAGKPL-LMT 283

Query: 235 EKD 237
           EKD
Sbjct: 284 EKD 286

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|Q2LVL1|LPXK_SYNAS Tetraacyldisaccharide 4'-kinase OS=Syntrophus aciditrophicus (strain SB) GN=lpxK PE=3 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 20/191 (10%)

Query: 58  KIGA--VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLRE-PLMALKRADIAV- 113
           ++GA  +ILDDG QH  L RD+ IV+++   PWGN  LLP GPLRE P  AL+RADI + 
Sbjct: 153 RMGADVLILDDGFQHRRLFRDINIVLLDSDRPWGNGFLLPRGPLREPPTRALRRADIVIR 212

Query: 114 ---VHHADLISEQNLKDIELEMRD----IKKSLSIFFTRMVPSYLFEVGNINSKIPLTAV 166
              +H+    +       ++E  D    + +S  IF     P  L  + +   K+ L  +
Sbjct: 213 TGGMHNR---TSGEAAGTQVETGDSGAVLLRSSPIFRGIHQPCALISL-DGGRKMDLQYL 268

Query: 167 CNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFN 226
               +   + IG    F ++L+ LG   V  L + DHH + + D+  I++  +E   +  
Sbjct: 269 AGERICAFAGIGVPEQFRKTLESLGAEIVEFLAYPDHHRYDSSDLAFIERTAKEARAE-- 326

Query: 227 PKPIVVVTEKD 237
              ++V TEKD
Sbjct: 327 ---MIVTTEKD 334

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Syntrophus aciditrophicus (strain SB) (taxid: 56780)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|Q7UNW7|LPXK_RHOBA Tetraacyldisaccharide 4'-kinase OS=Rhodopirellula baltica (strain SH1) GN=lpxK PE=3 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 4/177 (2%)

Query: 62  VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLIS 121
           +++DDG QH  L+RDL+IV+++   P+G   +LP G LREPL ++ RAD  ++   D + 
Sbjct: 140 LVMDDGFQHRRLQRDLDIVVIDATCPFGYGHVLPRGTLREPLDSVTRADWVLITRVDQVD 199

Query: 122 EQNLKDIELEMRDIKKSLSIFFTRMVPSYL-FEVGNINSKIPLTAVCNANVLCVSAIGSA 180
            + +  I   +        +  T   PS +   VG+  +   +  + +  V  VSAIG+ 
Sbjct: 200 PEEVLAIRSTIAQHAPDCPVLETEHRPSTIQSSVGDWEA---IEVLIDQPVALVSAIGNP 256

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKD 237
           +AF Q++   G   V+ L   DH S++    E ++  + +L+G   P   ++ T KD
Sbjct: 257 DAFEQTVLDCGAIVVDHLRLPDHDSYERATREKLRSWVTKLKGGPQPPQRLLCTHKD 313

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Rhodopirellula baltica (strain SH1) (taxid: 243090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

>sp|Q8A6K1|LPXK_BACTN Tetraacyldisaccharide 4'-kinase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=lpxK PE=3 SV=1

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 24/201 (11%)

Query: 54  LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
           +K   I  V+LDD  QH  ++  L I++ +    + +  LLP G LRE +    RA I +
Sbjct: 132 IKEPSIEVVLLDDAFQHRYVKPGLSILLTDYHRLFCDDTLLPAGRLRESVNGKNRAQIVI 191

Query: 114 VHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNI-------NSKI----- 161
           V        Q++K I+  +  I K L+++  + +    F  GN+       NS+I     
Sbjct: 192 VTKC----PQDIKPIDYNI--ITKRLNLYPYQQLYFSSFRYGNLQPVFPSANSEIDSTVN 245

Query: 162 --PLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLE 219
             PL+A+ N ++L V+ I S    ++ L K+    ++ L F+DHH F  RDI+ IK++  
Sbjct: 246 ELPLSALTNTDILLVTGIASPAPILEEL-KMYTDQIDSLSFDDHHHFSHRDIQQIKERFG 304

Query: 220 ELEGKFNPKPIVVVTEKDYDR 240
           +L+G+     ++V TEKD  R
Sbjct: 305 KLKGEHK---LIVTTEKDATR 322

Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
224126331	392	predicted protein [Populus trichocarpa]	0.996	0.721	0.669	1e-108
297737452	401	unnamed protein product [Vitis vinifera]	1.0	0.708	0.661	1e-107
225460937	464	PREDICTED: tetraacyldisaccharide 4'-kina	0.989	0.605	0.665	1e-105
356527062	399	PREDICTED: tetraacyldisaccharide 4'-kina	0.982	0.699	0.637	4e-99
357459711	400	Tetraacyldisaccharide 4'-kinase [Medicag	1.0	0.71	0.609	3e-98
356569780	470	PREDICTED: LOW QUALITY PROTEIN: tetraacy	0.978	0.591	0.612	5e-91
449444208	463	PREDICTED: tetraacyldisaccharide 4'-kina	0.996	0.611	0.584	6e-91
449517597	431	PREDICTED: tetraacyldisaccharide 4'-kina	0.996	0.656	0.584	8e-91
297834992	395	tetraacyldisaccharide 4'-kinase family p	0.992	0.713	0.598	6e-90
18402635	395	tetraacyldisaccharide 4'-kinase family p	0.992	0.713	0.580	6e-86

>gi|224126331|ref|XP_002319812.1| predicted protein [Populus trichocarpa] gi|222858188|gb|EEE95735.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 228/284 (80%), Gaps = 1/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML RHL  R  KIGVGANRAATAA F +++GYVDPRD     K     K GS + S K+G
Sbjct: 109 MLTRHLRGRAVKIGVGANRAATAACFFKRHGYVDPRDYLVEGK-WHEQKEGSRINSRKVG 167

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            V+LDDGMQHWSL+RD+EIVMVNGL PWGN ++LPLGPLREPL AL RAD+AV+HHA+L+
Sbjct: 168 VVVLDDGMQHWSLQRDIEIVMVNGLTPWGNHQILPLGPLREPLKALGRADVAVIHHANLV 227

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           SE NL+DI+L M+++KKSL IFFTRM P++ FEVGNIN++ PL  +CN  VLCVSAIGSA
Sbjct: 228 SEHNLRDIKLMMQEVKKSLPIFFTRMSPTHFFEVGNINTRTPLDILCNGVVLCVSAIGSA 287

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           NAFVQ ++K+G   V+RLDF+DHHS Q  DIE+I+ KL+ELE KF   P+VV+TEKDYDR
Sbjct: 288 NAFVQGIKKMGTLYVDRLDFSDHHSLQDTDIEIIRMKLKELEDKFGSMPVVVITEKDYDR 347

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL HL  YKV+ LCS+LQIIPCRG  +D FK LLKELV+VK
Sbjct: 348 DPEILRHLSPYKVMALCSELQIIPCRGNGDDDFKKLLKELVEVK 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737452|emb|CBI26653.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/284 (66%), Positives = 235/284 (82%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML+R LL R AKIGVGANRAATAA F E+YGY+DP      ++ C +  +GSHL + KIG
Sbjct: 113 MLQRRLLGRSAKIGVGANRAATAAHFFERYGYMDPGPATCLERLCFDQTMGSHLDADKIG 172

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           AVILDDGMQH SL RDLEIVMVNGLMPWGN  LLPLGPLREPL AL+RAD+A+VHHADL+
Sbjct: 173 AVILDDGMQHRSLWRDLEIVMVNGLMPWGNYHLLPLGPLREPLTALRRADVAIVHHADLV 232

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
            EQ+LKD+EL+M++IK+SL IFFTRM PS+L E+GNI+SK+PL +VC+  VLCVSAIG A
Sbjct: 233 LEQSLKDVELKMQEIKESLPIFFTRMAPSHLLEMGNIDSKMPLRSVCDKVVLCVSAIGFA 292

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           NAFVQ++ ++G   V+RLDF+DHH FQA+D+EMI+ +L +L+ KF  KP+VVVTEKDYDR
Sbjct: 293 NAFVQAIGRIGAFYVDRLDFSDHHLFQAKDVEMIRMRLGKLQDKFGLKPVVVVTEKDYDR 352

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL +L+ ++VL+LCS LQ IP  G +ED FK L+K+L++VK
Sbjct: 353 DPEILKNLDPFQVLILCSNLQFIPRDGRSEDGFKKLVKQLLEVK 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460937|ref|XP_002277963.1| PREDICTED: tetraacyldisaccharide 4'-kinase-like [Vitis vinifera]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 231/281 (82%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML+R LL R AKIGVGANRAATAA F E+YGY+DP      ++ C +  +GSHL + KIG
Sbjct: 113 MLQRRLLGRSAKIGVGANRAATAAHFFERYGYMDPGPATCLERLCFDQTMGSHLDADKIG 172

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           AVILDDGMQH SL RDLEIVMVNGLMPWGN  LLPLGPLREPL AL+RAD+A+VHHADL+
Sbjct: 173 AVILDDGMQHRSLWRDLEIVMVNGLMPWGNYHLLPLGPLREPLTALRRADVAIVHHADLV 232

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
            EQ+LKD+EL+M++IK+SL IFFTRM PS+L E+GNI+SK+PL +VC+  VLCVSAIG A
Sbjct: 233 LEQSLKDVELKMQEIKESLPIFFTRMAPSHLLEMGNIDSKMPLRSVCDKVVLCVSAIGFA 292

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           NAFVQ++ ++G   V+RLDF+DHH FQA+D+EMI+ +L +L+ KF  KP+VVVTEKDYDR
Sbjct: 293 NAFVQAIGRIGAFYVDRLDFSDHHLFQAKDVEMIRMRLGKLQDKFGLKPVVVVTEKDYDR 352

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELV 281
           DPEIL +L+ ++VL+LCS LQ IP  G +ED FK L+K LV
Sbjct: 353 DPEILKNLDPFQVLILCSNLQFIPRDGRSEDGFKKLIKGLV 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527062|ref|XP_003532133.1| PREDICTED: tetraacyldisaccharide 4'-kinase-like [Glycine max]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 178/279 (63%), Positives = 213/279 (76%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML RHLL  P K GVGANRAA A+ FI+KYGYVD    +  +K  ++ KV   + S KIG
Sbjct: 109 MLRRHLLGTPTKFGVGANRAAVASRFIQKYGYVDIGKSSWHEKQYLDEKVQDSVDSEKIG 168

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            V+LDD MQHWSL RDL+IVMVNGL  WGN +LLP GPLREPL AL+RAD  V+HHADL+
Sbjct: 169 VVVLDDAMQHWSLWRDLDIVMVNGLTLWGNLQLLPRGPLREPLTALRRADAVVIHHADLV 228

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           SE  LK IE  +  IKKS+ IF T++ P+YLFEVG IN+KIPLTA+   N+LCVSAIGSA
Sbjct: 229 SEHTLKYIESMVLGIKKSVPIFLTKLDPTYLFEVGTINAKIPLTALHETNILCVSAIGSA 288

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
             FV+ +QK+G   V+R+DF+DHH F ARDIEMI+ KL EL+GKF PKPIVV+TEKDYDR
Sbjct: 289 EPFVKQIQKMGALYVDRIDFSDHHIFHARDIEMIRAKLGELDGKFVPKPIVVMTEKDYDR 348

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKE 279
           DPEIL  L  +KV VLCS L+++P RG TEDSFK  LK+
Sbjct: 349 DPEILKQLHPFKVFVLCSALKVLPYRGSTEDSFKKFLKD 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459711|ref|XP_003600136.1| Tetraacyldisaccharide 4'-kinase [Medicago truncatula] gi|355489184|gb|AES70387.1| Tetraacyldisaccharide 4'-kinase [Medicago truncatula]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/284 (60%), Positives = 221/284 (77%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML+RHLL  P K GVGANRAA A+S I+KYGY+D R+ +  +K   + K  ++L S KIG
Sbjct: 112 MLQRHLLGTPTKFGVGANRAAVASSLIQKYGYIDIRNSSLYEKQNHDQKAQNYLDSEKIG 171

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            V+LDD MQHWSL RDL+IVMVNGL  WGN KLLPLGPLREPL AL+RAD+ V+HHADL+
Sbjct: 172 VVVLDDAMQHWSLWRDLDIVMVNGLTLWGNGKLLPLGPLREPLTALRRADVVVIHHADLV 231

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           S+  ++DIE  ++ IKKS+ IFFT+M P+YLFE+GNINSKIPLTA+  A +LCVSAIGSA
Sbjct: 232 SDHVVEDIESMVQKIKKSVPIFFTKMDPTYLFELGNINSKIPLTALHEAAILCVSAIGSA 291

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           + FV+ +Q++G   V+R+DF+DHH F ++DI MI+ KL+ELE KF  KP VV+TEKDYDR
Sbjct: 292 DPFVKRIQEMGVLYVDRIDFSDHHIFHSKDISMIRAKLKELERKFGSKPSVVITEKDYDR 351

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL  L  +K  VLCS L+++P +G  EDSFK  LK+ + +K
Sbjct: 352 DPEILKQLYPFKTFVLCSTLKVLPYKGNNEDSFKKFLKDQLKLK 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569780|ref|XP_003553074.1| PREDICTED: LOW QUALITY PROTEIN: tetraacyldisaccharide 4'-kinase-like [Glycine max]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 171/279 (61%), Positives = 204/279 (73%), Gaps = 1/279 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML RHLL    K GVGANRA  A+ FI+KYGY+D    +  +K  ++ KV   L S KIG
Sbjct: 183 MLRRHLLGTSTKFGVGANRAVVASHFIQKYGYIDIGKSSWHEKQYLDQKVQDSLDSEKIG 242

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            V+LDD MQ  +L RDL+IVMVN L  WGN +LLP GPL EPL AL+RAD  V+HHADL+
Sbjct: 243 VVVLDDAMQ-VALERDLDIVMVNELTLWGNLQLLPRGPLMEPLTALRRADEVVIHHADLV 301

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           SE  LKDIE  +  I KS+ IF T+M P+YLFEVG IN+KIPLTA+  A VLCVSAIGSA
Sbjct: 302 SEHTLKDIESMVLGINKSVPIFLTKMDPTYLFEVGTINAKIPLTALHEATVLCVSAIGSA 361

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
             FV+ +QK+G   V+ +DF+DHH F ARDIEMI+ KL ELEGKF  KPIVV+TEKDYDR
Sbjct: 362 KPFVKLIQKMGALYVDXIDFSDHHIFHARDIEMIRAKLGELEGKFGSKPIVVITEKDYDR 421

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKE 279
           DPEIL  L  +KV VLCS L+++P RG  EDSFK  LK+
Sbjct: 422 DPEILKQLHPFKVFVLCSALKVLPYRGSREDSFKKFLKD 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444208|ref|XP_004139867.1| PREDICTED: tetraacyldisaccharide 4'-kinase-like [Cucumis sativus]

 Score =  339 bits (870), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 208/284 (73%), Gaps = 1/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML RHL     K+GVGA+R ATAA F  KYGYV+ +    ++K C+  ++G+  KS KIG
Sbjct: 109 MLRRHLAGSSVKVGVGADRRATAAWFFNKYGYVEFQSSTMAEKYCLK-QMGNLPKSEKIG 167

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           AVILDDGMQHWSL  DLEIVM NG+   GN +LLPLGPLRE L ALKRAD+A++HHA+L+
Sbjct: 168 AVILDDGMQHWSLHHDLEIVMFNGITFLGNGQLLPLGPLRETLAALKRADVAIIHHANLV 227

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           S QN++DI + ++ IK +L++ FT M P+Y FEV  INSK+ L  +    V+CVSAIGSA
Sbjct: 228 SAQNIEDIVIRLQKIKDTLTVVFTEMCPAYFFEVTTINSKLSLETLSKNVVVCVSAIGSA 287

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           +AFVQ++QK+G   V+RLDF+DHH FQ RDI +IK KLEELE KF  KP+VVVTEKDYDR
Sbjct: 288 DAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKVKLEELEKKFASKPVVVVTEKDYDR 347

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DP I   L  Y+V  LCS LQI    GC+EDSFK +L+   + K
Sbjct: 348 DPMIFKCLHPYRVFALCSHLQITGSNGCSEDSFKKMLEMAFEFK 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517597|ref|XP_004165832.1| PREDICTED: tetraacyldisaccharide 4'-kinase-like [Cucumis sativus]

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 166/284 (58%), Positives = 208/284 (73%), Gaps = 1/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           ML RHL     K+GVGA+R ATAA F  KYGYV+ +    ++K C+  ++G+  KS KIG
Sbjct: 109 MLRRHLAGSSVKVGVGADRRATAAWFFNKYGYVEFQSSTMAEKYCLK-QMGNLPKSEKIG 167

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           AVILDDGMQHWSL  DLEIVM NG+   GN +LLPLGPLRE L ALKRAD+A++HHA+L+
Sbjct: 168 AVILDDGMQHWSLHHDLEIVMFNGITFLGNGQLLPLGPLRETLAALKRADVAIIHHANLV 227

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           S QN++DI + ++ IK +L++ FT M P+Y FEV  INSK+ L  +    V+CVSAIGSA
Sbjct: 228 SAQNIEDIVIRLQKIKDTLTVVFTEMCPAYFFEVTTINSKLSLETLSKNVVVCVSAIGSA 287

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           +AFVQ++QK+G   V+RLDF+DHH FQ RDI +IK KLEELE KF  KP+VVVTEKDYDR
Sbjct: 288 DAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKVKLEELEKKFASKPVVVVTEKDYDR 347

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DP I   L  Y+V  LCS LQI    GC+EDSFK +L+   + K
Sbjct: 348 DPMIFKCLHPYRVFALCSHLQITGSNGCSEDSFKKMLEMAFEFK 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834992|ref|XP_002885378.1| tetraacyldisaccharide 4'-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331218|gb|EFH61637.1| tetraacyldisaccharide 4'-kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/284 (59%), Positives = 214/284 (75%), Gaps = 2/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           MLERHL   P KIGVGANRAATAA F+EKYG VDP    +     ++ +  +   S KIG
Sbjct: 109 MLERHLRGGPVKIGVGANRAATAALFLEKYGCVDPSTLRTFFD--LHERAEARTISQKIG 166

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
           ++ILDDGMQH SL RDLEIVM+NGL PWGN  L+PLGPLREPL+AL+RADIAVVHH DLI
Sbjct: 167 SIILDDGMQHLSLSRDLEIVMLNGLNPWGNGHLVPLGPLREPLVALERADIAVVHHVDLI 226

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           ++Q+L+DIE  ++  KKS+ IF+++MVP+YLFEV N  S + L A+  A+VLCVSAIGSA
Sbjct: 227 TKQSLRDIENMVQGFKKSIPIFYSKMVPNYLFEVKNARSHVALEALRCASVLCVSAIGSA 286

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           +AFV+S++  G   V+RLDF+DHH F+A+D+E ++++   LE K N KPI+VVTEKDYDR
Sbjct: 287 DAFVKSIEMTGAHYVDRLDFSDHHLFEAQDVETMRRRANGLEHKSNSKPIIVVTEKDYDR 346

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL  L++Y VLVLCS+LQI P RG   DSF   L   +  K
Sbjct: 347 DPEILKCLDSYTVLVLCSELQITPIRGTDVDSFNSTLMRALAAK 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402635|ref|NP_566663.1| tetraacyldisaccharide 4'-kinase family protein [Arabidopsis thaliana] gi|21553672|gb|AAM62765.1| unknown [Arabidopsis thaliana] gi|332642864|gb|AEE76385.1| tetraacyldisaccharide 4'-kinase family protein [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 165/284 (58%), Positives = 208/284 (73%), Gaps = 2/284 (0%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           MLERHL   P KIGVGANRAATAA F++KYG VD     S     ++ +      S KIG
Sbjct: 109 MLERHLRGGPVKIGVGANRAATAALFLDKYGCVDSSSLRSFFD--LHERAQVWTISEKIG 166

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            +ILDDGMQHWSL RDLEIVM+NGL PWGN  L+P GPLREPL+AL+RAD+AVVHH DLI
Sbjct: 167 CIILDDGMQHWSLSRDLEIVMLNGLNPWGNGHLMPHGPLREPLLALERADVAVVHHVDLI 226

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           ++Q+L+DIE  ++  KKS+ IF+++MVP YLF+V N  S + L A+  A+VLCVSAIGSA
Sbjct: 227 TKQSLRDIENMIQGFKKSIPIFYSKMVPKYLFDVKNARSHVALEALRCASVLCVSAIGSA 286

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
           +AFV+S++  G   V+RLDF+DHH F+A D+E + ++ + LE K N KPI+VVTEKDYDR
Sbjct: 287 DAFVKSIEMTGAHYVDRLDFSDHHLFEAEDVETMSRRAKGLEHKSNCKPIIVVTEKDYDR 346

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
           DPEIL  L++Y VLVLCS+LQI P      DSF   L + +  K
Sbjct: 347 DPEILKCLDSYTVLVLCSELQITPILETDVDSFNYTLMKALAAK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2085765	395	LpxK "AT3G20480" [Arabidopsis	0.992	0.713	0.573	8.7e-79
UNIPROTKB|Q9KQX0	336	lpxK "Tetraacyldisaccharide 4'	0.214	0.181	0.435	5.9e-12
TIGR_CMR|VC_1877	336	VC_1877 "tetraacyldisaccharide	0.214	0.181	0.435	5.9e-12
TIGR_CMR|CPS_2126	343	CPS_2126 "tetraacyldisaccharid	0.549	0.454	0.318	5.9e-10
TIGR_CMR|CBU_0857	325	CBU_0857 "tetraacyldisaccharid	0.207	0.181	0.466	3.4e-09
TIGR_CMR|SO_2801	335	SO_2801 "tetraacyldisaccharide	0.228	0.194	0.415	8.4e-09
TIGR_CMR|GSU_2258	353	GSU_2258 "tetraacyldisaccharid	0.496	0.399	0.276	3.4e-07
UNIPROTKB|P27300	328	lpxK [Escherichia coli K-12 (t	0.190	0.164	0.444	2.1e-06
TIGR_CMR|SPO_3445	333	SPO_3445 "tetraacyldisaccharid	0.228	0.195	0.417	7.6e-06

TAIR|locus:2085765 LpxK "AT3G20480" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 163/284 (57%), Positives = 203/284 (71%)

Query:     1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
             MLERHL   P KIGVGANRAATAA F++KYG VD     S     ++ +      S KIG
Sbjct:   109 MLERHLRGGPVKIGVGANRAATAALFLDKYGCVDSSSLRSFFD--LHERAQVWTISEKIG 166

Query:    61 AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
              +ILDDGMQHWSL RDLEIVM+NGL PWGN  L+P GPLREPL+AL+RAD+AVVHH DLI
Sbjct:   167 CIILDDGMQHWSLSRDLEIVMLNGLNPWGNGHLMPHGPLREPLLALERADVAVVHHVDLI 226

Query:   121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
             ++Q+L+DIE  ++  KKS+ IF+++MVP YLF+V N  S + L A+  A+VLCVSAIGSA
Sbjct:   227 TKQSLRDIENMIQGFKKSIPIFYSKMVPKYLFDVKNARSHVALEALRCASVLCVSAIGSA 286

Query:   181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIXXXXXXXXGKFNPKPIVVVTEKDYDR 240
             +AFV+S++  G   V+RLDF+DHH F+A D+E +         K N KPI+VVTEKDYDR
Sbjct:   287 DAFVKSIEMTGAHYVDRLDFSDHHLFEAEDVETMSRRAKGLEHKSNCKPIIVVTEKDYDR 346

Query:   241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVDVK 284
             DPEIL  L++Y VLVLCS+LQI P      DSF   L + +  K
Sbjct:   347 DPEILKCLDSYTVLVLCSELQITPILETDVDSFNYTLMKALAAK 390

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS;IMP

GO:0009245 "lipid A biosynthetic process" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:2001289 "lipid X metabolic process" evidence=IMP

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q9KQX0 lpxK "Tetraacyldisaccharide 4'-kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 159 (61.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 27/62 (43%), Positives = 46/62 (74%)

Query:    54 LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
             L+ G +  ++ DDG+QH++L+RD+EI +V+G+  +GN++L+PLGPLREP+  L   D  +
Sbjct:   140 LEHG-VNVIVTDDGLQHYALQRDIEIAVVDGVRRFGNQELIPLGPLREPVSRLDEVDFII 198

Query:   114 VH 115
              +
Sbjct:   199 TN 200

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|VC_1877 VC_1877 "tetraacyldisaccharide 4`-kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 159 (61.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
 Identities = 27/62 (43%), Positives = 46/62 (74%)

Query:    54 LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
             L+ G +  ++ DDG+QH++L+RD+EI +V+G+  +GN++L+PLGPLREP+  L   D  +
Sbjct:   140 LEHG-VNVIVTDDGLQHYALQRDIEIAVVDGVRRFGNQELIPLGPLREPVSRLDEVDFII 198

Query:   114 VH 115
              +
Sbjct:   199 TN 200

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CPS_2126 CPS_2126 "tetraacyldisaccharide 4'-kinase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 164 (62.8 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 57/179 (31%), Positives = 91/179 (50%)

Query:    42 QKNCINP-KVGS-HLKSGKI----GA--VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKL 93
             Q+ C  P  VGS  + S K+    G   +I DDG+QH+ L RDLE+V+V+G   +GN  L
Sbjct:   120 QQRCQVPIAVGSDRIASAKLLIAQGCDIIISDDGLQHYRLARDLELVVVDGKRLFGNGLL 179

Query:    94 LPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFE 153
             LP GPLRE L  L ++D+ V+++      +N +D +      +K+       +  + L  
Sbjct:   180 LPAGPLREGLWRLPKSDL-VIYNG-----KNDQDYQ------EKNYPCMHMTLAATELCN 227

Query:   154 VGNINSKIPLTAVCNAN--VLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARD 210
             +     +I LT     N  V  ++ IG+   F  +L++     +N+  F DHH+F   D
Sbjct:   228 LLT-GERIYLTDFIRLNDSVNAIAGIGAPQRFFDTLKEHQFKVINQQSFVDHHAFVLAD 285

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0857 CBU_0857 "tetraacyldisaccharide 4'-kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 125 (49.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query:    54 LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
             L++ +   VI DDG+QH+SL RDLEI +++     GN + LP GPLREP   L   D  V
Sbjct:   138 LRNFQCDVVIGDDGLQHYSLGRDLEIALLDD-RHLGNGRCLPAGPLREPKSRLNTVDFVV 196

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|SO_2801 SO_2801 "tetraacyldisaccharide 4-kinase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 149 (57.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query:    59 IGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHAD 118
             +  +I DDG+QH++L RD+E+V+++G    GNR LLP GPLRE    L + D  +V+   
Sbjct:   142 VDVIICDDGLQHYALGRDIELVVIDGKRGLGNRNLLPAGPLREGEWRLNQVDFVIVNGGP 201

Query:   119 LISEQ 123
              ++ Q
Sbjct:   202 AVANQ 206

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|GSU_2258 GSU_2258 "tetraacyldisaccharide 4'-kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 42/152 (27%), Positives = 70/152 (46%)

Query:    63 ILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISE 122
             ILDDG QH  L RDL I++++   P GN + LP G LREP  A++RAD+ V       + 
Sbjct:   160 ILDDGYQHLRLHRDLNILLMDCNRPLGNGRTLPAGLLREPQTAVRRADLVVYTRC---TG 216

Query:   123 QNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANA 182
                  +   +   +   ++    ++P      G +    PL A+     +  + I     
Sbjct:   217 GKAPAVHGMIPSCRAGHALTGAALLPD-----GEVQ---PLAALRGLRGVACAGIAEPEG 268

Query:   183 FVQSLQKLGPCSVNRLDFNDHHSFQARDIEMI 214
             F  +L++ G   V  + F DH S+  R++  +
Sbjct:   269 FFDALRREGLDIVAAIPFADHASYGEREVSTL 300

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|P27300 lpxK [Escherichia coli K-12 (taxid:83333)]

 Score = 131 (51.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query:    62 VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVH 115
             ++ DDG+QH+ L RD+EIV+++G+  +GN   LP GP+RE    LK  D  +V+
Sbjct:   144 IVTDDGLQHYRLARDVEIVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVN 197

GO:0016020 "membrane" evidence=IDA

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=IEA;IMP;IDA

GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP;IDA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0009244 "lipopolysaccharide core region biosynthetic process" evidence=IMP

TIGR_CMR|SPO_3445 SPO_3445 "tetraacyldisaccharide 4'-kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 129 (50.5 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query:    62 VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMA-LKRADIAVVHHADLI 120
             +ILDDG Q+ S+ +DL IV+V+    +GN + +P GPLREP+   L RAD+ V+   D  
Sbjct:   140 IILDDGFQNPSVAKDLSIVVVDAAQGFGNGRCIPAGPLREPVATGLARADL-VLALGDAQ 198

Query:   121 SEQNLKD 127
             +++  +D
Sbjct:   199 AQEQFRD 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      284       276   0.00079  115 3  11 22  0.46    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  197 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.06u 0.10s 22.16t   Elapsed:  00:00:01
  Total cpu time:  22.06u 0.10s 22.16t   Elapsed:  00:00:01
  Start:  Thu May  9 20:05:41 2013   End:  Thu May  9 20:05:42 2013

GO:0009029 "tetraacyldisaccharide 4'-kinase activity" evidence=ISS

GO:0009245 "lipid A biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LEA0	LPXK_ARATH	2, ., 7, ., 1, ., 1, 3, 0	0.5809	0.9929	0.7139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!
3rd Layer	2.7.1.130	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIII.2878.1	hypothetical protein (392 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00160899	hypothetical protein (446 aa)	•		•			•	•		0.892
	gw1.IV.2364.1	hypothetical protein (234 aa)	•		•				•		0.885
	estExt_fgenesh4_pg.C_LG_VI0968	hypothetical protein (365 aa)	•		•				•		0.884
	gw1.X.6418.1	hypothetical protein (277 aa)	•		•				•		0.855
	eugene3.01070060	CMP-KDO synthetase (288 aa)	•		•				•		0.701
	fgenesh4_pg.C_LG_XI000980	CMP-KDO synthetase (293 aa)	•		•				•		0.698
	estExt_fgenesh4_pg.C_LG_II0575	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•				•		0.566
	estExt_fgenesh4_pg.C_LG_V1151	3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase (EC-2.5.1.55) (290 aa)	•		•				•		0.564
	gw1.XIV.3578.1	hypothetical protein (120 aa)			•				•		0.544
	estExt_Genewise1_v1.C_LG_V1283	hypothetical protein (341 aa)	•		•						0.524

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	284
pfam02606	318	pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kina	2e-42
PRK00652	325	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; R	3e-25
COG1663	336	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase	3e-24
TIGR00682	311	TIGR00682, lpxK, tetraacyldisaccharide 4'-kinase	1e-16
PRK01906	338	PRK01906, PRK01906, tetraacyldisaccharide 4'-kinas	8e-13

>gnl|CDD|217138 pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase

 Score =  147 bits (373), Expect = 2e-42
 Identities = 83/281 (29%), Positives = 127/281 (45%), Gaps = 63/281 (22%)

Query: 1   MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIG 60
           +L R     P  + VG +RAA A + +E +G                  V          
Sbjct: 100 LLARRT---PVPVVVGPDRAAAARALLEAHG----------------ADV---------- 130

Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
            +ILDDG QH+ L RDLEIV+V+G   +GN +LLP GPLREPL  LKRAD AV+ +    
Sbjct: 131 -IILDDGFQHYRLARDLEIVVVDGARGFGNGRLLPAGPLREPLSRLKRAD-AVILNGGEA 188

Query: 121 SEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSA 180
           ++  + +             +   R+ PS    + +   + PL       VL  + IG+ 
Sbjct: 189 ADPEIAEA-----------PVLRARLEPSAAVNLAD-GERRPLAGK---RVLAFAGIGNP 233

Query: 181 NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240
             F  +L+ LG   V  L F DHH F A D+  ++ + +E        P +V TEKD  +
Sbjct: 234 QRFFDTLRALGLEVVATLAFPDHHPFTAADLAFLEAEAKE--------PGLVTTEKDAVK 285

Query: 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELV 281
                 +L   ++ VL  + ++       ED+ + LL + +
Sbjct: 286 LRG--DNLFDERLWVLPVEAEL-------EDALRELLLKKL 317

This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyzes the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2, 3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <=> ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus. Length = 318

>gnl|CDD|234808 PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed

 Score =  102 bits (256), Expect = 3e-25
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 31/177 (17%)

Query: 62  VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLIS 121
           +ILDDG+QH+ L RD+EIV+V+G   +GN  LLP GPLREP   LK  D AV+       
Sbjct: 146 IILDDGLQHYRLARDIEIVVVDGQRGFGNGFLLPAGPLREPPSRLKSVD-AVIV----NG 200

Query: 122 EQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSAN 181
             + +  E+ MR     L       +            + PL ++    V+  + IG+  
Sbjct: 201 GGDARAGEIPMR-----LEPGEAVNLTG---------ERRPLASL--QRVVAFAGIGNPQ 244

Query: 182 AFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDY 238
            F  +L+ LG   V    F DH+ F   D+E +  K             +++TEKD 
Sbjct: 245 RFFATLRALGIEVVKTHAFPDHYPFTKADLEALVSKGL----------TLLMTEKDA 291

Length = 325

>gnl|CDD|224577 COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

 Score = 99.7 bits (249), Expect = 3e-24
 Identities = 57/188 (30%), Positives = 77/188 (40%), Gaps = 34/188 (18%)

Query: 55  KSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVV 114
                  ++LDDG+QH+ L RD EIV+V+G   +GN  LLP GPLREP   LK AD  + 
Sbjct: 138 AHLGCDIIVLDDGLQHYRLHRDFEIVVVDGQRGFGNGFLLPAGPLREPPKRLKSADAIIT 197

Query: 115 ----HHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNAN 170
                 AD           + MR               S             L       
Sbjct: 198 NGGGSRAD----------PIPMRLAPGHAPNLVAPGERS---------DVADLK---GKR 235

Query: 171 VLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPI 230
           V+  + IG+   F  +L+ LG   V  L F DH+ F A D+E + KK +           
Sbjct: 236 VVAFAGIGNPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLAKKAQAD--------G 287

Query: 231 VVVTEKDY 238
           ++ TEKD 
Sbjct: 288 LLTTEKDA 295

Length = 336

>gnl|CDD|233090 TIGR00682, lpxK, tetraacyldisaccharide 4'-kinase

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 32/187 (17%)

Query: 54  LKSGKIGAVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAV 113
           L+      +ILDDG+QH  L RD+EIV+V+G  P+GN  LLP GPLRE    LK AD  +
Sbjct: 117 LEQLDPDVIILDDGLQHRKLHRDVEIVVVDGQRPFGNGFLLPAGPLREFPKRLKSADAVI 176

Query: 114 VHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGN--INSKIPLTAVCNANV 171
           V       E     I                 ++P  +    N     ++P   +    V
Sbjct: 177 V----NGGENQSGFIP--------------MFLMP-RIACCVNLSTGERVPFDILKEL-V 216

Query: 172 LCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIV 231
              S IG+   F   L+ LG        F DH            ++ +          I+
Sbjct: 217 GAFSGIGNPQRFFAMLKNLGIQVKGTYLFPDHQELNEFCSSFAPEQGQ----------IL 266

Query: 232 VVTEKDY 238
           + TEKD 
Sbjct: 267 LTTEKDA 273

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 311

>gnl|CDD|179349 PRK01906, PRK01906, tetraacyldisaccharide 4'-kinase; Provisional

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 17/145 (11%)

Query: 62  VILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLIS 121
           ++ DDG+QH+ L RD+EIV+ +  +  GN  LLP GPLREPL   +R D      A LI+
Sbjct: 153 IVSDDGLQHYRLARDVEIVVFDHRLG-GNGFLLPAGPLREPLS--RRRD------ATLIN 203

Query: 122 EQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSAN 181
           +          R +      +  R+ P   + + +   + PL+      VL  + IG+  
Sbjct: 204 DPY-------SRALPPWPDTYALRLAPGDAWHLDDPALRRPLSQFAGERVLAAAGIGAPE 256

Query: 182 AFVQSLQKLGPCSVNRLDFNDHHSF 206
            F  +L+  G  +       DH++F
Sbjct: 257 RFFATLRAAG-LAPATRALPDHYAF 280

Length = 338

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	100.0
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	100.0
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	100.0
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	100.0
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	100.0
COG2403	449	Predicted GTPase [General function prediction only	97.02
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	86.38
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	83.56
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	83.01
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	81.64

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=100.00  E-value=1.6e-60  Score=448.73  Aligned_cols=226  Identities=35%  Similarity=0.551  Sum_probs=191.4

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV   80 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv   80 (284)
                      |||+++|   |||+||+||+++++.++++++                           +|||||||||||++|+||+|||
T Consensus       101 lla~~~~---~~V~V~~dR~~~~~~~~~~~~---------------------------~dviilDDGfQh~~L~rDl~Iv  150 (326)
T PF02606_consen  101 LLARKLP---VPVIVGPDRVAAARAALKEFP---------------------------ADVIILDDGFQHRRLKRDLDIV  150 (326)
T ss_pred             HHHHhcC---CcEEEeCcHHHHHHHHHHHCC---------------------------CCEEEEcCCcccccccCCcEEE
Confidence            7899987   779999999999999999886                           8999999999999999999999


Q ss_pred             EEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCCc
Q 023313           81 MVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSK  160 (284)
Q Consensus        81 l~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~  160 (284)
                      |+|+.+|||||++||+||||||+++|+|||+||+|+.+.........+       .+..|+|++++.+..+.++..    
T Consensus       151 l~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~~~----  219 (326)
T PF02606_consen  151 LVDADRPFGNGFLLPAGPLREPLSALKRADAVIVTGCDASDPAIEKAI-------RPGKPIFSARLKPEGLRNLNT----  219 (326)
T ss_pred             EEeCCCCCcCCccCCCCcccCChhHhCcccEEEEcCCCcchhHHHHhh-------hcCCceEEEEEEecccccccc----
Confidence            999999999999999999999999999999999998654322211111       157899999999987754432    


Q ss_pred             ccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcCC
Q 023313          161 IPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR  240 (284)
Q Consensus       161 ~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaVK  240 (284)
                      .....++|++++||||||||++||++|+++|+++++++.|||||.||++|++.+...+++.      + .||||||||||
T Consensus       220 ~~~~~l~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~------~-~iltTeKDaVK  292 (326)
T PF02606_consen  220 GSIEPLKGKPVLAFSGIGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAA------G-IILTTEKDAVK  292 (326)
T ss_pred             cchhhccCCeeEEEEEcCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhccc------c-eEEecHHHHhh
Confidence            2334589999999999999999999999999999999999999999999999998877643      2 79999999999


Q ss_pred             ChhHHhhccCceEEEEeeEEEEeecCCCChHHHHHHHHHhhh
Q 023313          241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVD  282 (284)
Q Consensus       241 l~~~~~~~~~~~i~~l~i~~~~~p~~~~~~~~f~~~l~~~l~  282 (284)
                      |+..... ...++|+++++++|.       +.|.+.|.+.|+
T Consensus       293 l~~~~~~-~~~~~~~l~i~~~~~-------~~~~~~l~~~l~  326 (326)
T PF02606_consen  293 LPDFAQE-NGLKIWVLPIELEFE-------EEFEEFLLKKLQ  326 (326)
T ss_pred             Chhhhhh-cCCeEEEEEEEEEEC-------HHHHHHHHHhhC
Confidence            9863321 123599999999883       678888888764

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=100.00  E-value=2e-56  Score=418.37  Aligned_cols=201  Identities=29%  Similarity=0.397  Sum_probs=161.2

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV   80 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv   80 (284)
                      |||+++   ++||+||+||+++++.++++++                           +|||||||||||++|+||+|||
T Consensus        94 lla~~~---~~~V~V~~dR~~a~~~~~~~~~---------------------------~dviilDDGfQh~~l~rD~~Iv  143 (311)
T TIGR00682        94 LLAKYL---HATVVASKDRKDAILLILEQLD---------------------------PDVIILDDGLQHRKLHRDVEIV  143 (311)
T ss_pred             Hhhhhc---CCcEEEeChHHHHHHHHHhcCC---------------------------CCEEEECCCCcCccccCCeEEE
Confidence            788885   4789999999999999987776                           8999999999999999999999


Q ss_pred             EEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCCc
Q 023313           81 MVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSK  160 (284)
Q Consensus        81 l~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~  160 (284)
                      |+|+++|||||++||+||||||+++|+|||+||+|+......    .+...      ..+.+      ..+.++.. .+.
T Consensus       144 lvD~~~~fgng~lLPaGpLREp~~~l~raD~vvv~~~~~~~~----~~~~~------~~~~~------~~~~~~~~-~~~  206 (311)
T TIGR00682       144 VVDGQRPFGNGFLLPAGPLREFPKRLKSADAVIVNGGENQSG----FIPMF------LMPRI------ACCVNLST-GER  206 (311)
T ss_pred             EECCCCCCCCCcccCCcCCCCChhhhhhCCEEEEeCCccccc----hHHhh------cCccc------cceeeccc-ccc
Confidence            999999999999999999999999999999999998532211    11111      11111      11112211 222


Q ss_pred             ccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcCC
Q 023313          161 IPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR  240 (284)
Q Consensus       161 ~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaVK  240 (284)
                      .+++.++|+ ++||||||||++||++|+++|+.++.++.|||||.||.+|++.+.+          .+..||||||||||
T Consensus       207 ~~~~~l~~~-v~a~aGIgnP~~F~~~L~~~G~~~~~~~~fpDHh~f~~~d~~~~~~----------~~~~ivtTeKDaVK  275 (311)
T TIGR00682       207 VPFDILKEL-VGAFSGIGNPQRFFAMLKNLGIQVKGTYLFPDHQELNEFCSSFAPE----------QGQILLTTEKDAVK  275 (311)
T ss_pred             CChhHhCCe-EEEEEECCChHHHHHHHHHcCCccccceECCCCccCCHHHHHHHHh----------CCCeEEechhHHhh
Confidence            345667887 8999999999999999999999999999999999999999987532          13579999999999


Q ss_pred             ChhHHhhccCceEEEEeeEEEEe
Q 023313          241 DPEILMHLEAYKVLVLCSKLQII  263 (284)
Q Consensus       241 l~~~~~~~~~~~i~~l~i~~~~~  263 (284)
                      |+.    +...++|+++++++|.
T Consensus       276 l~~----~~~~~~~~l~i~~~~~  294 (311)
T TIGR00682       276 LQA----LAEEIWLYLPVDLERM  294 (311)
T ss_pred             chh----ccCCcEEEEEEEEEEC
Confidence            873    2224799999999996

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=100.00  E-value=6.5e-56  Score=416.98  Aligned_cols=209  Identities=32%  Similarity=0.487  Sum_probs=170.0

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV   80 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv   80 (284)
                      |||++ |+  +||+||+||+++++.++++++                           +|||||||||||++|+||+|||
T Consensus       115 lla~~-~~--~~V~V~~dR~~~~~~~~~~~~---------------------------~dviilDDGfQh~~l~rdl~Iv  164 (325)
T PRK00652        115 LIARR-TG--APVAVSPDRVAAARALLAAHG---------------------------ADIIILDDGLQHYRLARDIEIV  164 (325)
T ss_pred             HhccC-CC--ceEEEcCcHHHHHHHHHhcCC---------------------------CCEEEEcCCccCcccCCCeEEE
Confidence            68888 65  789999999999999988776                           8999999999999999999999


Q ss_pred             EEeCCCCCCCCccccCCCCCCCccccccccEEEEcCC-cchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCC
Q 023313           81 MVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHA-DLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINS  159 (284)
Q Consensus        81 l~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~-~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~  159 (284)
                      |+|++++||||++||+||||||.++|+|||+||+|+. +.                  ..+.+.+++.+....++ . .+
T Consensus       165 l~d~~~~fgng~~LPaG~LREp~~~l~rAd~vv~~~~~~~------------------~~~~~~~~~~~~~~~~~-~-~~  224 (325)
T PRK00652        165 VVDGQRGFGNGFLLPAGPLREPPSRLKSVDAVIVNGGGDA------------------RAGEIPMRLEPGEAVNL-T-GE  224 (325)
T ss_pred             EECCCCCCCCCccCCCcCccCChhHhccCCEEEEeCCCcc------------------ccccceeeecccccccc-c-cc
Confidence            9999999999999999999999999999999999983 21                  11334455554443333 1 12


Q ss_pred             cccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcC
Q 023313          160 KIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYD  239 (284)
Q Consensus       160 ~~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaV  239 (284)
                      ..+.+.+  ++++||||||||++|+++|+++|++++.++.|||||.||++|++.+.+.          +..|||||||||
T Consensus       225 ~~~~~~l--~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~f~DHh~ft~~dl~~l~~~----------~~~ivtTeKDaV  292 (325)
T PRK00652        225 RRPLASL--QRVVAFAGIGNPQRFFATLRALGIEVVKTHAFPDHYPFTKADLEALVSK----------GLTLLMTEKDAV  292 (325)
T ss_pred             cCchhhh--ceEEEEEeCCCHHHHHHHHHHcCCceeeeeeCCCCCCCCHHHHHHHHhc----------CCeEEEchhHHh
Confidence            2234445  7899999999999999999999999999999999999999999988642          247999999999


Q ss_pred             CChhHHhhccCceEEEEeeEEEEeecCCCChHHHHHHHHHhhh
Q 023313          240 RDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELVD  282 (284)
Q Consensus       240 Kl~~~~~~~~~~~i~~l~i~~~~~p~~~~~~~~f~~~l~~~l~  282 (284)
                      ||+.    +...++|+++++++|.       +.|.+.|.+.+.
T Consensus       293 Kl~~----~~~~~~~~l~i~~~~~-------~~~~~~l~~~i~  324 (325)
T PRK00652        293 KCRA----FAQDNWWYLPVDAELS-------PDFPDALLEKLD  324 (325)
T ss_pred             hCcc----ccCCCEEEEEEEEEEC-------HHHHHHHHHHHh
Confidence            9863    1123799999999985       346566665543

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=100.00  E-value=2e-54  Score=408.71  Aligned_cols=211  Identities=25%  Similarity=0.389  Sum_probs=168.5

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHh-CCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKY-GYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEI   79 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~I   79 (284)
                      |||++.   ++||+||+||++|++.+++++ +                           +||||||||||||+|+||+||
T Consensus       121 lla~~~---~~~V~V~~dR~~aa~~l~~~~~~---------------------------~dviIlDDGfQH~~L~RDleI  170 (338)
T PRK01906        121 LIARRT---DAPVWVCPDRVAAAQALLAAHPG---------------------------VDVIVSDDGLQHYRLARDVEI  170 (338)
T ss_pred             HhhhcC---CCeEEEeCcHHHHHHHHHHhCCC---------------------------CCEEEECCCCccchhcCCcEE
Confidence            688874   478999999999999888754 4                           899999999999999999999


Q ss_pred             EEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCC
Q 023313           80 VMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINS  159 (284)
Q Consensus        80 vl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~  159 (284)
                      ||+|+ ++||||++||+||||||.+++++||++  ++...      ..    +.   ...++|.+++.+..++++..+.+
T Consensus       171 vl~D~-~~~Gng~lLPaGpLREp~~~l~~a~v~--~~~~~------~~----~~---~~~~~~~~~~~~~~~~~~~~~~~  234 (338)
T PRK01906        171 VVFDH-RLGGNGFLLPAGPLREPLSRRRDATLI--NDPYS------RA----LP---PWPDTYALRLAPGDAWHLDDPAL  234 (338)
T ss_pred             EEEcC-CCCCCCcccCCcCCcCChhhcccEEEE--eCcch------hh----hc---ccCcceEEEecccceeecCCccc
Confidence            99999 789999999999999999999987644  44211      00    00   12357788888877666643223


Q ss_pred             cccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcC
Q 023313          160 KIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYD  239 (284)
Q Consensus       160 ~~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaV  239 (284)
                      ..+++.++|++++||||||||++||++|+++|+++ .++.|||||.||++|++.+            +...|||||||||
T Consensus       235 ~~~~~~l~~~~v~a~aGIgnP~~F~~~L~~~G~~~-~~~~fpDHh~yt~~dl~~~------------~~~~lvtTeKDaV  301 (338)
T PRK01906        235 RRPLSQFAGERVLAAAGIGAPERFFATLRAAGLAP-ATRALPDHYAFADNPFVDD------------DADAILITEKDAV  301 (338)
T ss_pred             cCchhHcCCCeEEEEEECCCHHHHHHHHHHcCCce-eEEeCCCCCCCCHHHHhhc------------CCCeEEECchHhh
Confidence            34567788999999999999999999999999986 5799999999999999754            1346999999999


Q ss_pred             CChhHHhhccCceEEEEeeEEEEeecCCCChHHHHHHHHHhh
Q 023313          240 RDPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKELV  281 (284)
Q Consensus       240 Kl~~~~~~~~~~~i~~l~i~~~~~p~~~~~~~~f~~~l~~~l  281 (284)
                      ||.+    +...++|+++++++|.       +.|.+.+.+.+
T Consensus       302 Kl~~----~~~~~~~~l~i~~~~~-------~~~~~~l~~~~  332 (338)
T PRK01906        302 KLGS----WRDARIWVVPVEAALD-------PRLIALVVEKV  332 (338)
T ss_pred             cCcc----ccCCCEEEEEEEEEEC-------HHHHHHHHHHH
Confidence            9853    2234799999999995       34655555544

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1e-52  Score=391.75  Aligned_cols=201  Identities=31%  Similarity=0.463  Sum_probs=161.5

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHh-CCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKY-GYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEI   79 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~I   79 (284)
                      |||++   +.+||+|++||+++++.+++++ |                           +|+|||||||||++|+||+||
T Consensus       113 LlA~~---t~~pv~v~~~R~~~~~~l~~~~~~---------------------------~diIi~DDG~Qh~rL~rD~eI  162 (336)
T COG1663         113 LLARR---TGAPVAVSPDRKDAAKALLAAHLG---------------------------CDIIVLDDGLQHYRLHRDFEI  162 (336)
T ss_pred             HHhhh---cCCcEEEehhHHHHHHHHHhhCCC---------------------------CCEEEEcCcchhhHhhcceeE
Confidence            57776   4478999999999999999865 5                           899999999999999999999


Q ss_pred             EEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCC
Q 023313           80 VMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINS  159 (284)
Q Consensus        80 vl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~  159 (284)
                      |++|+.++||||++||+||||||+.++++||+|++++......                 + +.+++.+.....+....+
T Consensus       163 vvvd~~r~fGng~~lPaGpLRep~~rl~~ad~ii~~g~~~~~~-----------------~-~~~~l~~~~~~~l~~~~~  224 (336)
T COG1663         163 VVVDGQRGFGNGFLLPAGPLREPPKRLKSADAIITNGGGSRAD-----------------P-IPMRLAPGHAPNLVAPGE  224 (336)
T ss_pred             EEEeccccCCCcccccCCcccCChhhhhcCcEEEecCCCcccc-----------------c-hhhhhcccccceeeccce
Confidence            9999999999999999999999999999999999987422110                 1 123333222222322223


Q ss_pred             cccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcC
Q 023313          160 KIPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYD  239 (284)
Q Consensus       160 ~~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaV  239 (284)
                      ..+...+++++++||||||||++||+||+++|+.+++++.|||||.|+++|++.+.+.++.        ..|||||||+|
T Consensus       225 ~~~~~~~~~~~v~afaGIg~P~rFf~tL~~~g~~~~~~~~FpDH~~f~~~~l~~l~~~~~~--------~~Ll~TeKDaV  296 (336)
T COG1663         225 RSDVADLKGKRVVAFAGIGNPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLAKKAQA--------DGLLTTEKDAV  296 (336)
T ss_pred             ecchhhcCCceEEEEEecCChHHHHHHHHHcCcceeeeecCCchhhccHHHHHHHHhhhcc--------ceEEeecccee
Confidence            3445567888999999999999999999999999999999999999999999999876542        35999999999


Q ss_pred             CChhHHhhccCceEEEEeeEEE
Q 023313          240 RDPEILMHLEAYKVLVLCSKLQ  261 (284)
Q Consensus       240 Kl~~~~~~~~~~~i~~l~i~~~  261 (284)
                      ||+.    ..+.++|++++...
T Consensus       297 Kl~~----~~~~~~~~l~v~~~  314 (336)
T COG1663         297 KLRD----FAPENVWNLPVLAI  314 (336)
T ss_pred             eccc----ccchhhccceeeEE
Confidence            9874    22356676666543

>COG2403 Predicted GTPase [General function prediction only]

Probab=97.02  E-value=0.0034  Score=60.52  Aligned_cols=137  Identities=20%  Similarity=0.280  Sum_probs=92.3

Q ss_pred             CcccEEEecCCCCC-ccccCCceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhh
Q 023313           57 GKIGAVILDDGMQH-WSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDI  135 (284)
Q Consensus        57 ~~~dvIIlDDGfQH-~~L~RDl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~  135 (284)
                      +..|+||+|-|=-. .-++.|+=||++|+.+|.-+=--+| |++     ++.-||+||+|+.+.++......+...+++.
T Consensus       223 ~~aD~IlwdGgnndfPfvkpd~~Ivvvda~rpg~ei~~~p-Ge~-----~irlAD~VIItkveea~~~kvrkI~~~I~~i  296 (449)
T COG2403         223 KEADFILWDGGNNDFPFVKPDLHIVVVDALRPGEEIGSFP-GEL-----RIRLADLVIITKVEEAMAEKVRKIVRNIEEI  296 (449)
T ss_pred             hhccEEEEeCCCCCCCcccCCeeEEEecCCCCchhhccCC-Cce-----eeeeccEEEEecccccchHHHHHHHHHHHhh
Confidence            44699999987533 3468999999999999854322223 444     4788999999998888888888999999999


Q ss_pred             ccCccEEEE--EEecCeeEEeCCCCCcccccccCCCeEEEEecCCChHH-------HHHHHHHh-CCcccceecCCCCCC
Q 023313          136 KKSLSIFFT--RMVPSYLFEVGNINSKIPLTAVCNANVLCVSAIGSANA-------FVQSLQKL-GPCSVNRLDFNDHHS  205 (284)
Q Consensus       136 ~~~~~vf~~--~~~~~~~~~~~~~~~~~~~~~l~g~~v~a~sGIgnP~~-------F~~~L~~~-G~~~~~~~~FpDHh~  205 (284)
                      ++...+..+  .+++.            +...++||+++.++-  .|+.       -..+|+.. |.+++    =-|-|.
T Consensus       297 NP~A~Vi~~~~~~~~~------------~~~~ieGKrvlvved--aPt~thgg~~y~agyla~~~~~~i~----~vdPrp  358 (449)
T COG2403         297 NPKAEVILAASVFRPD------------PPEDIEGKRVLVVED--APTSTHGGMPYGAGYLAAKKGGEIV----GVDPRP  358 (449)
T ss_pred             CCCcEEEecccccccC------------ChhhcCCcEEEEEec--CCcccccchhhhhhHHHHhhccceE----EeCCCc
Confidence            888877665  33332            233568898877653  2332       22344432 43333    236688


Q ss_pred             CCHHHHHHHHHH
Q 023313          206 FQARDIEMIKKK  217 (284)
Q Consensus       206 ft~~dl~~i~~~  217 (284)
                      |+...|.+-.++
T Consensus       359 ynrg~i~~~y~k  370 (449)
T COG2403         359 YNRGVIREDYEK  370 (449)
T ss_pred             ccchHHHHHHHh
Confidence            887777655443

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=86.38  E-value=5.4  Score=35.58  Aligned_cols=81  Identities=19%  Similarity=0.313  Sum_probs=56.2

Q ss_pred             ccEEEecCCC-----CCccccCCceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhh--hHHHHHHH
Q 023313           59 IGAVILDDGM-----QHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQ--NLKDIELE  131 (284)
Q Consensus        59 ~dvIIlDDGf-----QH~~L~RDl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~--~~~~i~~~  131 (284)
                      .|+++..-|=     -.+.|.-.+.|+|+|.+.  |.+-..=.||      .+.+||++|+||.|.++.-  +++.....
T Consensus        97 ~Dll~iEs~GNL~~~~sp~L~d~~~v~Vidvte--Ge~~P~K~gP------~i~~aDllVInK~DLa~~v~~dlevm~~d  168 (202)
T COG0378          97 LDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTE--GEDIPRKGGP------GIFKADLLVINKTDLAPYVGADLEVMARD  168 (202)
T ss_pred             CCEEEEecCcceecccCcchhhceEEEEEECCC--CCCCcccCCC------ceeEeeEEEEehHHhHHHhCccHHHHHHH
Confidence            6888887764     234566668999999764  3332222233      4777999999998765433  34777778


Q ss_pred             HHhhccCccEEEEEEe
Q 023313          132 MRDIKKSLSIFFTRMV  147 (284)
Q Consensus       132 ~~~~~~~~~vf~~~~~  147 (284)
                      .++.++..|++++...
T Consensus       169 a~~~np~~~ii~~n~k  184 (202)
T COG0378         169 AKEVNPEAPIIFTNLK  184 (202)
T ss_pred             HHHhCCCCCEEEEeCC
Confidence            8888899999887765

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=83.56  E-value=1.3  Score=37.99  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=42.9

Q ss_pred             cccCCceEEEEeCCCCCCCCccccCC-CCCC-CccccccccEEEEcCCcchhhhh-HHHHHHHHHhhccCccEE
Q 023313           72 SLRRDLEIVMVNGLMPWGNRKLLPLG-PLRE-PLMALKRADIAVVHHADLISEQN-LKDIELEMRDIKKSLSIF  142 (284)
Q Consensus        72 ~L~RDl~Ivl~D~~~~fgng~lLPaG-~LRE-p~~~l~rAD~vvvt~~~~~~~~~-~~~i~~~~~~~~~~~~vf  142 (284)
                      .+.-+.-|.++|+.+.       +.+ ...+ -...++.||+||+||.|.+++++ .+.+.+.++..++..+++
T Consensus       111 ~~~~~~iI~vVDa~~~-------~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  111 DFRLDSIITVVDATNF-------DELENIPELLREQIAFADVIVLNKIDLVSDEQKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             HESESEEEEEEEGTTH-------GGHTTHCHHHHHHHCT-SEEEEE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred             cccccceeEEeccccc-------cccccchhhhhhcchhcCEEEEeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence            3446778899998653       111 1111 23579999999999998887773 488889999998888875

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=83.01  E-value=1.3  Score=42.28  Aligned_cols=85  Identities=21%  Similarity=0.285  Sum_probs=64.8

Q ss_pred             EEecCCCCCccccCCceEEEEeCCCCC-CCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCcc
Q 023313           62 VILDDGMQHWSLRRDLEIVMVNGLMPW-GNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLS  140 (284)
Q Consensus        62 IIlDDGfQH~~L~RDl~Ivl~D~~~~f-gng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~  140 (284)
                      +=+||++-. .++=|-=+-++|+.... --+-.=|-|..-|-...++-||.||+||.|..++++...+++++++++.-.+
T Consensus       166 Fw~dd~l~s-dVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~AD~II~NKtDli~~e~~~~l~q~I~~INslA~  244 (391)
T KOG2743|consen  166 FWLDDELGS-DVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQ  244 (391)
T ss_pred             HhhhhhhcC-ceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhhheeeeccccccCHHHHHHHHHHHHHhhhHHH
Confidence            335666644 34556667889986422 2244568899999888999999999999999999999999999999877777


Q ss_pred             EEEEEEe
Q 023313          141 IFFTRMV  147 (284)
Q Consensus       141 vf~~~~~  147 (284)
                      ++++.+.
T Consensus       245 m~~Tky~  251 (391)
T KOG2743|consen  245 MIETKYS  251 (391)
T ss_pred             hhhhhhc
Confidence            7766553

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.64  E-value=2.8  Score=32.43  Aligned_cols=76  Identities=22%  Similarity=0.399  Sum_probs=51.3

Q ss_pred             EEEcc--chHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEe--cCCCCCccccCCceEEEEeCCCCC
Q 023313           13 IGVGA--NRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVIL--DDGMQHWSLRRDLEIVMVNGLMPW   88 (284)
Q Consensus        13 v~V~~--~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIl--DDGfQH~~L~RDl~Ivl~D~~~~f   88 (284)
                      ++||.  ++....+.+++++|                           ..++..  |+|+.+..                
T Consensus         3 liVGG~~~~~~~~~~~~~~~G---------------------------~~~~~hg~~~~~~~~~----------------   39 (97)
T PF10087_consen    3 LIVGGREDRERRYKRILEKYG---------------------------GKLIHHGRDGGDEKKA----------------   39 (97)
T ss_pred             EEEcCCcccHHHHHHHHHHcC---------------------------CEEEEEecCCCCccch----------------
Confidence            45777  88889999999998                           788888  77777653                


Q ss_pred             CCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEE
Q 023313           89 GNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTR  145 (284)
Q Consensus        89 gng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~  145 (284)
                                 +.-.+.+++||+||+.- +..++.....+++..+++  +.|+++++
T Consensus        40 -----------~~l~~~i~~aD~VIv~t-~~vsH~~~~~vk~~akk~--~ip~~~~~   82 (97)
T PF10087_consen   40 -----------SRLPSKIKKADLVIVFT-DYVSHNAMWKVKKAAKKY--GIPIIYSR   82 (97)
T ss_pred             -----------hHHHHhcCCCCEEEEEe-CCcChHHHHHHHHHHHHc--CCcEEEEC
Confidence                       00135789999988753 244555566666655553  56665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
4ehx_A	315	Crystal Structure Of Lpxk From Aquifex Aeolicus At		5e-04
4ehw_A	317	Crystal Structure Of Lpxk From Aquifex Aeolicus At		5e-04

>pdb|4EHX|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 1.9 Angstrom Resolution Length = 315

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
             ILDDG QH  L RDL I+++         +LLP G LREPL  ++RAD  V+ +    
Sbjct: 134 VFILDDGFQHRKLHRDLNILLLKKKD--LKDRLLPAGNLREPLKEIRRADALVLTY---- 187
Query: 121 SEQNLKDIELEMRDIKKSLSIFFT-----RMVPSYLFEVGNINSKIPLTAVCNANVLCVS 175
             Q ++  E            FFT     +M   +   + +   ++P   +    V+  S
Sbjct: 188 --QEVEPFE------------FFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFS 233
Query: 176 AIGSANAFVQSLQKLGPCSVNRLDFNDHHSF 206
            +G    F + L+ LG      + F DH+ +
Sbjct: 234 GLGDNGQFRKVLKNLGIKVKEFMSFPDHYDY 264

>pdb|4EHW|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 2.3 Angstrom Resolution Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 61  AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
             ILDDG QH  L RDL I+++         +LLP G LREPL  ++RAD  V+ +    
Sbjct: 136 VFILDDGFQHRKLHRDLNILLLKKKDL--KDRLLPAGNLREPLKEIRRADALVLTY---- 189
Query: 121 SEQNLKDIELEMRDIKKSLSIFFT-----RMVPSYLFEVGNINSKIPLTAVCNANVLCVS 175
             Q ++  E            FFT     +M   +   + +   ++P   +    V+  S
Sbjct: 190 --QEVEPFE------------FFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFS 235
Query: 176 AIGSANAFVQSLQKLGPCSVNRLDFNDHHSF 206
            +G    F + L+ LG      + F DH+ +
Sbjct: 236 GLGDNGQFRKVLKNLGIKVKEFMSFPDHYDY 266

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	100.0

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=100.00  E-value=7.4e-56  Score=414.31  Aligned_cols=211  Identities=25%  Similarity=0.345  Sum_probs=172.3

Q ss_pred             CcccccCCCCceEEEccchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313            1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV   80 (284)
Q Consensus         1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv   80 (284)
                      |||+++|+  +||+|++||+++++.++++.+                           +|||||||||||++|+||+|||
T Consensus       103 lla~~~~~--~~v~v~~~R~~~~~~~~~~~~---------------------------~dviIlDDGfQh~~l~rDl~Iv  153 (315)
T 4ehx_A          103 LMAKLLPH--VSVVASEDRYKGGLLALEKLS---------------------------PEVFILDDGFQHRKLHRDLNIL  153 (315)
T ss_dssp             HHHHHCTT--SEEEEESSHHHHHHHHHHHHC---------------------------CSEEEEETCTTCTTBCCSEEEE
T ss_pred             HHHHhCCC--ceEEEecchHHHHHHHhhccC---------------------------CcEEEecCccccccccccceEE
Confidence            67888887  679999999999999988877                           8999999999999999999999


Q ss_pred             EEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCCc
Q 023313           81 MVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSK  160 (284)
Q Consensus        81 l~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~  160 (284)
                      |+|+  +||||++||+||||||.++|+|||+||+|+.+....           ......+.+........+.  ....+.
T Consensus       154 v~d~--~~gng~lLPaGpLREp~~~l~raD~iii~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~  218 (315)
T 4ehx_A          154 LLKK--KDLKDRLLPAGNLREPLKEIRRADALVLTYQEVEPF-----------EFFTGKPTFKMFREFCCLL--NSDFEE  218 (315)
T ss_dssp             EEEH--HHHTCCBTTTSSBSSCGGGGGGCSEEEEECTTTSCC-----------CCCCSSCEEEEEEEEEEEE--CTTSCE
T ss_pred             Eeee--eccCCeecccccccCChhHhhhccEEEEecCCcchh-----------hHhhccchhhhcchhhhhh--cccccc
Confidence            9994  689999999999999999999999999998542110           0112445665554433332  233344


Q ss_pred             ccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcCC
Q 023313          161 IPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR  240 (284)
Q Consensus       161 ~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaVK  240 (284)
                      .+++.++|++++||||||||++||++|+++|+++++++.|||||.||+.+++              ++..||||||||||
T Consensus       219 ~~~~~~~~~~v~a~aGIgnP~~F~~~L~~~g~~i~~~~~fpDHh~fs~~~~~--------------~~~~iltTEKDaVK  284 (315)
T 4ehx_A          219 VPFDILKEREVIAFSGLGDNGQFRKVLKNLGIKVKEFMSFPDHYDYSDFTPE--------------EGEIYLTTPKDLIK  284 (315)
T ss_dssp             ECGGGGTTCCEEEEESSTHHHHHHHHHHHHTCCEEEEEECCTTCCCSSCCCC--------------TTCCEEECHHHHTT
T ss_pred             cchhhhhhhhhhhhhhcCCcHHHHHHHHHcCCceeeeEecCChhhhchhhhc--------------cCCeEEECchhhhh
Confidence            5667789999999999999999999999999999999999999999976543              24679999999999


Q ss_pred             ChhHHhhccCceEEEEeeEEEEeecCCCChHHHHHHHHHh
Q 023313          241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKEL  280 (284)
Q Consensus       241 l~~~~~~~~~~~i~~l~i~~~~~p~~~~~~~~f~~~l~~~  280 (284)
                      |+.    .  .++|++++++++.     +++.|.++|.+.
T Consensus       285 l~~----~--~~i~~l~i~~~i~-----~e~~l~~~i~ki  313 (315)
T 4ehx_A          285 LQG----Y--ENVFALNFKVKLE-----REEKLKKLIYRI  313 (315)
T ss_dssp             CTT----C--TTEEEEEEEEEET-----THHHHHHHHHHT
T ss_pred             CcC----c--CCCEEEEEEEEEC-----ChHHHHHHHHHh
Confidence            863    1  3689999999984     677888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.26

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.26  E-value=0.12  Score=42.65  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             ccccCCceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEE
Q 023313           71 WSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTR  145 (284)
Q Consensus        71 ~~L~RDl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~  145 (284)
                      ....-|-=|+++|+.+....-.-.     -+....+..||+||+||.|.+++  .+.+++.++.+++..+++.+.
T Consensus       118 ~~~~l~~vi~vVDa~~~~~~~~~~-----~~~~~Qi~~AD~ivlNK~Dl~~~--~~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         118 QRYLLDGVIALVDAVHADEQMNQF-----TIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             HHEEEEEEEEEEETTTHHHHHHHC-----HHHHHHHHTCSEEEEECTTTCSC--THHHHHHHHHHCSSSCEEECC
T ss_pred             ccccccchhhhhhhhhhhhhhhhh-----HHHHHHHHhCCcccccccccccH--HHHHHHHHHHHhCCCeEEEee
Confidence            333445558899987542210011     12335688999999999887643  457888888898888886433