Citrus Sinensis ID: 023326
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | 2.2.26 [Sep-21-2011] | |||||||
| Q2V3H0 | 287 | Pentatricopeptide repeat- | yes | no | 0.901 | 0.891 | 0.633 | 1e-91 | |
| Q8LG95 | 307 | Pentatricopeptide repeat- | no | no | 0.771 | 0.713 | 0.419 | 1e-45 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.348 | 0.120 | 0.323 | 7e-05 | |
| Q9M8W9 | 508 | Pentatricopeptide repeat- | no | no | 0.711 | 0.397 | 0.246 | 0.0004 |
| >sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 336 bits (861), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/270 (63%), Positives = 206/270 (76%), Gaps = 14/270 (5%)
Query: 19 IPPLQTAS------GFSLLTTKLATSNPHLK------CFLNQ--NKQPPVSNSNANASKK 64
I PLQ S FSLL + S LK C ++ K+ + A+
Sbjct: 12 IFPLQGLSKSQEFICFSLLQSPRCGSYSSLKTKRFGFCIRSKFSEKEAGKLDRGYVATVN 71
Query: 65 NKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPL 124
+K + KVGKKE HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP+
Sbjct: 72 SKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPI 131
Query: 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNM 184
IAAAKAL+ILRKR QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAESLWNM
Sbjct: 132 IAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNM 191
Query: 185 ILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
ILHT TRSI +RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF+ +
Sbjct: 192 ILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELN 251
Query: 245 QDDKQKLVLKKYLSKWKYIHFKGERVRVRR 274
Q++ +KL+L++YLS++KYI+F GERVRV+R
Sbjct: 252 QEENRKLILRRYLSEYKYIYFNGERVRVKR 281
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 134/224 (59%), Gaps = 5/224 (2%)
Query: 55 SNSNANASKKNKLVVKVGK----KEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYG 110
S++ K N +VV + + +W+ R G+ KA ++ + L N K VYG
Sbjct: 18 SSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYG 77
Query: 111 ALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170
ALD + AWE EFPL+ KAL IL +W ++IQV KWMLSKGQG TMGTY +LL A
Sbjct: 78 ALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALA 137
Query: 171 KDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230
+D+R DEAE LWN + ++ F++MIS+Y DM K+ EVFADMEELGV+P+
Sbjct: 138 EDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNV 197
Query: 231 DTVRRIASAFQRVGQDDKQKLVLKKY-LSKWKYIHFKGERVRVR 273
V + F ++ DK + ++KKY +W++ + KG RV+V+
Sbjct: 198 AIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVK 241
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 145 QVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN-MILHTQTRSISKRLFSRMIS 203
QV + M + G TY+ LL + K HR EA + N M+L+ + SI ++ +IS
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVT--YNSLIS 357
Query: 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245
Y M ++ +E+ M E G +PD T + S F+R G+
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 17/219 (7%)
Query: 55 SNSNANASKKNKLV---VKVGKKEQHLWQKRDSAGSGQKAL-----NLVRIVSELPNEKH 106
S+ NA N + K + E+ LW ++ G G + ++R + E
Sbjct: 218 SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ-QFEFI 276
Query: 107 AVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLL 166
VY L + A + I + L + ++ ++VA M G Y+ L+
Sbjct: 277 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 336
Query: 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV 226
+ R +EAE ++ + + SI+ ++ MI++Y HHD +K IE+ +ME +
Sbjct: 337 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 396
Query: 227 -RPDEDTVRRIA-SAFQR-----VGQDDKQKLVLKKYLS 258
PD T + + S F+R VG+ K+ +V K +LS
Sbjct: 397 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKE-MVTKHHLS 434
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | ||||||
| 297740592 | 277 | unnamed protein product [Vitis vinifera] | 0.827 | 0.848 | 0.795 | 1e-106 | |
| 224114395 | 272 | predicted protein [Populus trichocarpa] | 0.936 | 0.977 | 0.690 | 1e-102 | |
| 449513186 | 270 | PREDICTED: pentatricopeptide repeat-cont | 0.887 | 0.933 | 0.698 | 1e-101 | |
| 255571955 | 224 | conserved hypothetical protein [Ricinus | 0.75 | 0.950 | 0.793 | 2e-95 | |
| 356555478 | 288 | PREDICTED: pentatricopeptide repeat-cont | 0.735 | 0.725 | 0.765 | 6e-92 | |
| 255645904 | 288 | unknown [Glycine max] | 0.735 | 0.725 | 0.765 | 7e-92 | |
| 297800166 | 284 | hypothetical protein ARALYDRAFT_914772 [ | 0.950 | 0.950 | 0.620 | 5e-91 | |
| 356549156 | 289 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 1.0 | 0.982 | 0.608 | 3e-90 | |
| 18415213 | 287 | pentatricopeptide repeat-containing prot | 0.901 | 0.891 | 0.633 | 8e-90 | |
| 79325165 | 260 | pentatricopeptide repeat-containing prot | 0.753 | 0.823 | 0.733 | 2e-89 |
| >gi|297740592|emb|CBI30774.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/244 (79%), Positives = 208/244 (85%), Gaps = 9/244 (3%)
Query: 36 ATSNPHLKCFLNQNKQPPVSNSNANASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLV 95
TS H+KC N PP + + + ++ KVGKKE HLW+KRDS GSGQKALNLV
Sbjct: 41 VTSMRHVKCCHN----PP-----SYRAVEKEISKKVGKKEHHLWRKRDSIGSGQKALNLV 91
Query: 96 RIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ 155
RIVSELPNEK AVYGALDKWTAWETEFPLIAAAKALRILRKR QW RVIQVAKWMLSKGQ
Sbjct: 92 RIVSELPNEKEAVYGALDKWTAWETEFPLIAAAKALRILRKRNQWKRVIQVAKWMLSKGQ 151
Query: 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215
GATMGTYDTLLLAFD D R DEAESLWNMILHT TRSISK+LFSRMISLYDHHDM +K+I
Sbjct: 152 GATMGTYDTLLLAFDMDWRVDEAESLWNMILHTHTRSISKQLFSRMISLYDHHDMRDKVI 211
Query: 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRD 275
EVFADMEELGV+PDEDTVRR+A AFQ +GQ+DKQKLVLKKY KWKYIHF GERVRVRRD
Sbjct: 212 EVFADMEELGVKPDEDTVRRVACAFQTLGQEDKQKLVLKKYQCKWKYIHFNGERVRVRRD 271
Query: 276 AWYE 279
AW E
Sbjct: 272 AWDE 275
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114395|ref|XP_002316747.1| predicted protein [Populus trichocarpa] gi|222859812|gb|EEE97359.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/268 (69%), Positives = 216/268 (80%), Gaps = 2/268 (0%)
Query: 12 GFSNSCRIPPLQTASGFSLLTTKLATSNPHLKCFLNQNKQPPVSNSNANASKKNKLVVKV 71
S+ P ++ + F L T +L + P + L N+ A + K+V K
Sbjct: 6 ALSSGFLFPSVKIS--FFLRTARLTSLEPKVTSALCVKCSKKQLKLNSRADENRKVVKKS 63
Query: 72 GKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKAL 131
GKKE HLWQKRDSAGSGQKALNLVRIVSELPNEK AVYGALDKWTAWETEFPLIAAAKAL
Sbjct: 64 GKKEHHLWQKRDSAGSGQKALNLVRIVSELPNEKEAVYGALDKWTAWETEFPLIAAAKAL 123
Query: 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191
+IL++R QW RVIQVAKWMLSKGQGAT+GTYDTLLLAFDKD R DEA+SLWNMI+H TR
Sbjct: 124 KILQQRRQWTRVIQVAKWMLSKGQGATLGTYDTLLLAFDKDDRVDEAKSLWNMIIHVHTR 183
Query: 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKL 251
S+SKRLFSRMISLYDHH+M ++IIEVFADMEELGVRPDEDTV R+A AF+++GQ++K++L
Sbjct: 184 SMSKRLFSRMISLYDHHNMQDEIIEVFADMEELGVRPDEDTVWRVARAFKKLGQEEKREL 243
Query: 252 VLKKYLSKWKYIHFKGERVRVRRDAWYE 279
VL++YL KWKYIHF GERVRV+RD W E
Sbjct: 244 VLERYLCKWKYIHFNGERVRVKRDGWNE 271
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449513186|ref|XP_004164255.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/265 (69%), Positives = 211/265 (79%), Gaps = 13/265 (4%)
Query: 24 TASGFSLLTTKLATSNPHLK---------CFLNQNKQPPVSNSNANASKKNKLVVKVGKK 74
T++GF L K+ H K C NQ QP S + + + ++V KVGK+
Sbjct: 7 TSTGFDALMPKIDCIYYHNKFTFTPSSVICVHNQAAQPLTSFT----TPERRVVKKVGKE 62
Query: 75 EQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRIL 134
HLW+KRDSAGSGQKALNLVRIVS+ PNEK AVYG L+KW AWETEFPLIAAAKALRIL
Sbjct: 63 THHLWKKRDSAGSGQKALNLVRIVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRIL 122
Query: 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194
RKR QW RVIQVAKWMLSKGQGATMGTYDTLLLAFD D R DEAESLWNMILHT TRSIS
Sbjct: 123 RKRSQWKRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMILHTHTRSIS 182
Query: 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254
KR+FSRMISLY+HHD+ +KIIE+FADMEELGV+PDEDTVRR+ AFQ++GQ+D +K+V K
Sbjct: 183 KRVFSRMISLYEHHDLQDKIIEIFADMEELGVKPDEDTVRRVCRAFQKLGQEDNRKMVYK 242
Query: 255 KYLSKWKYIHFKGERVRVRRDAWYE 279
+Y +WKYIHFKGERVRVRRD W E
Sbjct: 243 RYSCQWKYIHFKGERVRVRRDGWDE 267
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571955|ref|XP_002526919.1| conserved hypothetical protein [Ricinus communis] gi|223533738|gb|EEF35472.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/213 (79%), Positives = 186/213 (87%)
Query: 57 SNANASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWT 116
SN K K V K GK+E HLW+KRDSA SG+KAL+LVRIV ELP+EK VYGALDKWT
Sbjct: 2 SNPRDDKSRKPVKKAGKEEHHLWKKRDSARSGEKALSLVRIVCELPDEKECVYGALDKWT 61
Query: 117 AWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRAD 176
AWETEFPLIA AK LRILRK QWLRVIQVAKWMLSKGQG TMGTYDTLLLAFD D+R D
Sbjct: 62 AWETEFPLIAVAKGLRILRKHNQWLRVIQVAKWMLSKGQGTTMGTYDTLLLAFDMDNRVD 121
Query: 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236
EA SLWNMILHT RSISKRLFSRMISLYDHH+MP+ IIE+FADMEELGVRPDEDTVRR+
Sbjct: 122 EAASLWNMILHTHVRSISKRLFSRMISLYDHHNMPDGIIEIFADMEELGVRPDEDTVRRV 181
Query: 237 ASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGER 269
A AF+ +GQ++KQKLVLK+Y+S+WKYIHFKGER
Sbjct: 182 ARAFKELGQEEKQKLVLKRYMSRWKYIHFKGER 214
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555478|ref|XP_003546058.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/209 (76%), Positives = 184/209 (88%)
Query: 76 QHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILR 135
HLW+ RDSA SGQKAL LVR V +LPNEK AVYGALDKWTAWETEFP+IA +KAL+ILR
Sbjct: 80 HHLWKSRDSAQSGQKALALVRTVYKLPNEKEAVYGALDKWTAWETEFPVIAVSKALKILR 139
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
KRG W+RVIQVAKWMLSKGQGATMGTYDTLLLAFD D R DEAESLWNMI+H RS+SK
Sbjct: 140 KRGHWVRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMIIHAHMRSVSK 199
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
RLFSRMISLYDHH+MP+KII+VFADMEEL ++PDEDTVRR+A AF+ +G ++K+KLV+K+
Sbjct: 200 RLFSRMISLYDHHNMPDKIIDVFADMEELRLKPDEDTVRRVARAFRELGDEEKRKLVIKQ 259
Query: 256 YLSKWKYIHFKGERVRVRRDAWYESGSTN 284
Y KWKYIHF GERVRVR +AW ++ STN
Sbjct: 260 YGLKWKYIHFNGERVRVRTEAWEDNKSTN 288
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255645904|gb|ACU23441.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 160/209 (76%), Positives = 184/209 (88%)
Query: 76 QHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILR 135
HLW+ RDSA SGQKAL LVR V +LPNEK AVYGALDKWTAWETEFP+IA +KAL+ILR
Sbjct: 80 HHLWKSRDSAQSGQKALALVRTVYKLPNEKEAVYGALDKWTAWETEFPVIAVSKALKILR 139
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
KRG W+RVIQVAKWMLSKGQGATMGTYDTLLLAFD D R DEAESLWNMI+H RS+SK
Sbjct: 140 KRGHWVRVIQVAKWMLSKGQGATMGTYDTLLLAFDMDKRVDEAESLWNMIIHAHLRSVSK 199
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
RLFSRMISLYDHH+MP+KII+VFADMEEL ++PDEDTVRR+A AF+ +G ++K+KLV+K+
Sbjct: 200 RLFSRMISLYDHHNMPDKIIDVFADMEELRLKPDEDTVRRVARAFRELGDEEKRKLVIKQ 259
Query: 256 YLSKWKYIHFKGERVRVRRDAWYESGSTN 284
Y KWKYIHF GERVRVR +AW ++ STN
Sbjct: 260 YGLKWKYIHFNGERVRVRTEAWEDNKSTN 288
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800166|ref|XP_002867967.1| hypothetical protein ARALYDRAFT_914772 [Arabidopsis lyrata subsp. lyrata] gi|297313803|gb|EFH44226.1| hypothetical protein ARALYDRAFT_914772 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/279 (62%), Positives = 210/279 (75%), Gaps = 9/279 (3%)
Query: 2 ICRSSWVMGFGFSNSCRIPPLQTASGFSLLTTKLATSNPHLK------CFLNQNKQPPVS 55
+C + +G GF+ P Q FSLL S LK C ++ +
Sbjct: 3 LCNFNPTLG-GFTFQGLSKP-QEFGCFSLLEFPSCGSYSKLKTKRFGFCIRSKFSEKQAG 60
Query: 56 NSNANASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKW 115
+ N+ + KVGKKE HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW
Sbjct: 61 KLDVATVNSNE-IKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKW 119
Query: 116 TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRA 175
AWE EFP+IAAAKAL+ILRKR QW RVIQ+AKWMLSKGQGATMGTYDTLLLAFD D RA
Sbjct: 120 VAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDTLLLAFDMDQRA 179
Query: 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235
DEAESLWNMILHT TRSI +RLF+RMI+LY H+D+ +K+IEVFADMEEL VRPDEDT RR
Sbjct: 180 DEAESLWNMILHTHTRSIPRRLFARMIALYAHYDLHDKVIEVFADMEELKVRPDEDTARR 239
Query: 236 IASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRR 274
+A AF+ +GQ++ +KL+L++YLS++KYI+F GERVRV+R
Sbjct: 240 VARAFRELGQEENRKLILRRYLSEFKYIYFNGERVRVKR 278
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549156|ref|XP_003542963.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 206/286 (72%), Gaps = 2/286 (0%)
Query: 1 MICRSSWVMGFGFSNSC--RIPPLQTASGFSLLTTKLATSNPHLKCFLNQNKQPPVSNSN 58
M C SS V S C + P + + +T T++P C Q +
Sbjct: 4 MTCESSIVSPLFLSRICQAKTDPTRAFLLENKFSTITVTASPKTSCIRCTVVQSKFGHKG 63
Query: 59 ANASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAW 118
+ +K K GKKE HLW+ RDSA SGQKAL LVR V +LPNEK AVYGALDKWTAW
Sbjct: 64 GSPMEKKKGKKTTGKKEHHLWKSRDSAQSGQKALALVRTVYKLPNEKEAVYGALDKWTAW 123
Query: 119 ETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178
ETEFP+IA +KAL+ILRKRG W+R IQVAKWM+SKGQGATMGTYDTLLLAFD D R D A
Sbjct: 124 ETEFPVIAVSKALKILRKRGHWVRAIQVAKWMISKGQGATMGTYDTLLLAFDMDKRVDVA 183
Query: 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238
ES WNMI+H RS+SKRLFSRMISL DHH+M +KIIEVFADMEEL V+PDEDTVRR+A
Sbjct: 184 ESSWNMIIHAHIRSVSKRLFSRMISLXDHHNMLDKIIEVFADMEELRVKPDEDTVRRVAR 243
Query: 239 AFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWYESGSTN 284
AF+ +G+++K KLV+K+Y KWKYIHF GERV VR +AW ++ STN
Sbjct: 244 AFRELGEEEKWKLVIKRYGLKWKYIHFNGERVXVRTEAWEDNESTN 289
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18415213|ref|NP_567571.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|186512032|ref|NP_001119009.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|334186688|ref|NP_001190768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635632|sp|Q2V3H0.2|PP322_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18975, chloroplastic; Flags: Precursor gi|332658715|gb|AEE84115.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332658717|gb|AEE84117.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332658718|gb|AEE84118.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/270 (63%), Positives = 206/270 (76%), Gaps = 14/270 (5%)
Query: 19 IPPLQTAS------GFSLLTTKLATSNPHLK------CFLNQ--NKQPPVSNSNANASKK 64
I PLQ S FSLL + S LK C ++ K+ + A+
Sbjct: 12 IFPLQGLSKSQEFICFSLLQSPRCGSYSSLKTKRFGFCIRSKFSEKEAGKLDRGYVATVN 71
Query: 65 NKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPL 124
+K + KVGKKE HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP+
Sbjct: 72 SKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPI 131
Query: 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNM 184
IAAAKAL+ILRKR QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAESLWNM
Sbjct: 132 IAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNM 191
Query: 185 ILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
ILHT TRSI +RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF+ +
Sbjct: 192 ILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELN 251
Query: 245 QDDKQKLVLKKYLSKWKYIHFKGERVRVRR 274
Q++ +KL+L++YLS++KYI+F GERVRV+R
Sbjct: 252 QEENRKLILRRYLSEYKYIYFNGERVRVKR 281
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79325165|ref|NP_001031667.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332658716|gb|AEE84116.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/214 (73%), Positives = 187/214 (87%)
Query: 61 ASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWET 120
A+ +K + KVGKKE HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE
Sbjct: 41 ATVNSKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEV 100
Query: 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAES 180
EFP+IAAAKAL+ILRKR QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAES
Sbjct: 101 EFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAES 160
Query: 181 LWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240
LWNMILHT TRSI +RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF
Sbjct: 161 LWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAF 220
Query: 241 QRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRR 274
+ + Q++ +KL+L++YLS++KYI+F GERVRV+R
Sbjct: 221 RELNQEENRKLILRRYLSEYKYIYFNGERVRVKR 254
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | ||||||
| TAIR|locus:505006498 | 287 | AT4G18975 "AT4G18975" [Arabido | 0.704 | 0.696 | 0.69 | 1.4e-73 | |
| TAIR|locus:2127388 | 307 | emb1417 "AT4G21190" [Arabidops | 0.690 | 0.638 | 0.421 | 4.2e-40 | |
| TAIR|locus:2197783 | 384 | AT1G04590 "AT1G04590" [Arabido | 0.573 | 0.424 | 0.371 | 3.5e-27 |
| TAIR|locus:505006498 AT4G18975 "AT4G18975" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 138/200 (69%), Positives = 163/200 (81%)
Query: 75 EQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXX 134
E HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP
Sbjct: 82 EHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQIL 141
Query: 135 XXXGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194
QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAESLWNMILHT TRSI
Sbjct: 142 RKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIP 201
Query: 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254
+RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF+ + Q++ +KL+L+
Sbjct: 202 RRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILR 261
Query: 255 KYLSKWKYIHFKGERVRVRR 274
+YLS++KYI+F GERVRV+R
Sbjct: 262 RYLSEYKYIYFNGERVRVKR 281
|
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| TAIR|locus:2127388 emb1417 "AT4G21190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 83/197 (42%), Positives = 117/197 (59%)
Query: 78 LWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXX 137
+W+ R G+ KA ++ + L N K VYGALD + AWE EFP
Sbjct: 45 VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
+W ++IQV KWMLSKGQG TMGTY +LL A +D+R DEAE LWN + ++
Sbjct: 105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257
F++MIS+Y DM K+ EVFADMEELGV+P+ V + F ++ DK + ++KKY
Sbjct: 165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224
Query: 258 S-KWKYIHFKGERVRVR 273
+W++ + KG RV+V+
Sbjct: 225 PPQWEFRYIKGRRVKVK 241
|
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| TAIR|locus:2197783 AT1G04590 "AT1G04590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 62/167 (37%), Positives = 96/167 (57%)
Query: 94 LVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQVAKWMLSK 153
LV + ++ + K AVYGALD W AWE FP QW R++QV KW+LSK
Sbjct: 149 LVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSK 208
Query: 154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213
GQG TMGTY L+ A D D RA+EA +W + S+ +L +M+ +Y ++M +
Sbjct: 209 GQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQE 268
Query: 214 IIEV---FADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256
+++V F D+E +P D+ V+ +A A++ +G D+++ V+ KY
Sbjct: 269 LVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKY 315
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.133 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 284 249 0.00080 114 3 11 22 0.43 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 621 (66 KB)
Total size of DFA: 228 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.70u 0.09s 19.79t Elapsed: 00:00:01
Total cpu time: 19.70u 0.09s 19.79t Elapsed: 00:00:01
Start: Mon May 20 21:53:15 2013 End: Mon May 20 21:53:16 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2V3H0 | PP322_ARATH | No assigned EC number | 0.6333 | 0.9014 | 0.8919 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00007220001 | SubName- Full=Chromosome undetermined scaffold_186, whole genome shotgun sequence; (226 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 284 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| TIGR00593 | 887 | TIGR00593, pola, DNA polymerase I | 5e-04 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 180 SLWNMILHTQTRSISKRLFSRM-----------ISLYDHHDMPNKIIEVFADMEELGVRP 228
SL M L + ++++FSRM IS Y+ + +P+K +E +A ME+ V P
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 229 DEDTVRRIASAFQRVGQDDK 248
DE T+ + SA +G D
Sbjct: 388 DEITIASVLSACACLGDLDV 407
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Length = 857 |
| >gnl|CDD|233038 TIGR00593, pola, DNA polymerase I | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 37/186 (19%)
Query: 82 RDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWL 141
++ A I +W E + AK L L KR + +
Sbjct: 344 TENQSYVAYASEADGIPLLTILTDDK----FARWLLNEQIKKIGHDAKFLMHLLKR-EGI 398
Query: 142 RVIQV------AKWMLSKGQGATMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTRSI- 193
+ V A ++L Q +T+ DTL + + DE
Sbjct: 399 ELGGVIFDTMLAAYLLDPAQVSTL---DTLARRYLVEELILDEKIGGKLAKFAFPPLEEA 455
Query: 194 ----------SKRLFSRMI---------SLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234
+KRL ++ SLY ++P + +V A+ME+ G++ D D ++
Sbjct: 456 TEYLARRAAATKRLAEELLKELDENKLLSLYREIELP--LSKVLAEMEKTGIKVDADYLQ 513
Query: 235 RIASAF 240
++ F
Sbjct: 514 ELSQEF 519
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All proteins in this family for which functions are known are DNA polymerases Many also have an exonuclease motif. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 887 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.93 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.92 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.64 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.14 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.14 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.1 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.08 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.81 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.8 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.63 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.55 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.53 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.51 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.3 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.26 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.22 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.2 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.19 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.18 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 98.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.12 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.05 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.02 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.0 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.96 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.95 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.93 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 97.91 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.57 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.31 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 97.29 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.24 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.23 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.21 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.1 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.1 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.09 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.07 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.05 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 96.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.86 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.81 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.75 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.66 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.51 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.45 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.33 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.2 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.99 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.98 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.96 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.78 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.77 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 95.66 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.6 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 95.54 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.16 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.09 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.03 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.01 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 94.93 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 94.81 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 94.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 94.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.34 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 94.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 94.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.23 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.19 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 94.17 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.03 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.99 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 93.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 93.68 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 93.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 93.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.42 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 93.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 92.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 92.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 92.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 92.41 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.3 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 92.11 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.9 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 91.82 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 90.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 90.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 90.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 90.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 89.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 89.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 89.31 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.58 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 88.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 88.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 88.11 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 88.01 | |
| PF10366 | 108 | Vps39_1: Vacuolar sorting protein 39 domain 1; Int | 88.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 87.43 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.3 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 86.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 86.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 86.62 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 86.6 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 86.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 86.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 86.38 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 86.3 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 85.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 85.54 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 85.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 84.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 84.14 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.97 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.96 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 83.37 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.82 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 82.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 81.31 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 81.14 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 80.93 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 80.91 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 80.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 80.1 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=235.38 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=132.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|.++|+.|. .+|+++||.+|.+|+++|++++|+++|++|.+.|+.||.+||++||.+|++.|++++|
T Consensus 272 ~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 272 CGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred CCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 456667777777653 4677788888888888888888888888888778888888887777777777777777
Q ss_pred HHHHHHHHHcCCCC------------------------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 179 ESLWNMILHTQTRS------------------------------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 179 ~~l~~~m~~~~~~~------------------------------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+++.+|.+.|..+ +|..+||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777776666432 277889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
|.+||++||++|++.|.+++|.++|+.|.+++++.+
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998877655
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=232.85 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=136.6
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
|..++|..+|+.|. ..+..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 628 G~~deAl~lf~eM~---~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 628 GDWDFALSIYDDMK---KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred CCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 44555666665553 456778899999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++|++|.+.|..| |..+||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999998888876 889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 023326 260 WK 261 (284)
Q Consensus 260 ~~ 261 (284)
..
T Consensus 784 Gi 785 (1060)
T PLN03218 784 GI 785 (1060)
T ss_pred CC
Confidence 43
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=230.72 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=126.6
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
|..++|.++|+.|. ..+..|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||.+||++||++|++.|++++|.
T Consensus 593 G~ldeA~elf~~M~---e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 593 GQVDRAKEVYQMIH---EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred CCHHHHHHHHHHHH---HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 44455555655553 355667888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++|++|.+.|+.| +..+||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 670 ~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8888888888775 888888888888888888888888888888888888888888888888888888888888888765
Q ss_pred c
Q 023326 260 W 260 (284)
Q Consensus 260 ~ 260 (284)
.
T Consensus 749 G 749 (1060)
T PLN03218 749 G 749 (1060)
T ss_pred C
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=212.33 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----------------------------------HHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGT-----------------------------------YDT 164 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t-----------------------------------y~~ 164 (284)
..||+++|+.+|.+|++.|++++|+++|++|.+.|+.||..| ||+
T Consensus 185 ~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 358999999999999999999999999999988777666544 466
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
||++|++.|++++|.++|++|. ++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 7777888888888888888774 23888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHHhc
Q 023326 245 QDDKQKLVLKKYLSKW 260 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~~ 260 (284)
.+++|.+++++|.+..
T Consensus 340 ~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 340 LLEHAKQAHAGLIRTG 355 (697)
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=220.81 Aligned_cols=167 Identities=18% Similarity=0.156 Sum_probs=122.4
Q ss_pred HHHHHHHHH--hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 023326 90 KALNLVRIV--SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL 167 (284)
Q Consensus 90 ~a~~l~~~~--~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~ 167 (284)
....|++.+ .|..++|.++|+.|. .+|+++|+.+|.+|+++|+.++|+++|++|.+ ++.||.+||+++|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIP-------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 334444443 456667777776653 35666777777777777777777777777764 46666666666665
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----------------------------CCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQTR-----------------------------SISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~~~-----------------------------~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
+|++.|+++.+.+++..|++.|.. ++|..+||+||.+|+++|+.++|+++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554444444331 248889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 219 ADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
++|.+.|+.||.+||++||.+|++.|.+++|.++|++|.+++++.+
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999998777655
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=213.01 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=101.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|+.+|+.|. .||+++||.+|.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.|+++.|
T Consensus 235 ~g~~~~A~~lf~~m~-------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 235 CGDVVSARLVFDRMP-------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred CCCHHHHHHHHhcCC-------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 355566777776653 3666777777777777777777777777777777766666666666666666666666
Q ss_pred HHHHHHHHHcCCCC------------------------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 179 ESLWNMILHTQTRS------------------------------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 179 ~~l~~~m~~~~~~~------------------------------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+++..|.+.|..| +|..+||+||.+|++.|++++|+++|++|++.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 66666665555543 244556666666666666666666666666666667
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|..||+++|.+|++.|++++|.++++.|.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 7777777777777777777777766666655
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-16 Score=100.46 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 193 ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 193 ~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
||+++||+||.+|++.|++++|+++|++|++.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999985
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-15 Score=96.70 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK 171 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~ 171 (284)
||+++||.+|.+|++.|++++|+++|++|.+.|+.||.+||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-10 Score=100.26 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..+|..+|.++|+--..++|.+++++-.....+.+..+||.||.+-+-. .+++++++|++..+.| |..|||+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P-nl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP-NLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC-chHhHHHHH
Confidence 56799999999999999999999999999888889999999999876433 3489999999999997 999999999
Q ss_pred HHHHhCCChhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHhHH
Q 023326 203 SLYDHHDMPNKI----IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK-QKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A----~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~-a~~l~~~m~~ 258 (284)
+...+.|+++.| ++++.||++-|+.|...+|..+|.-+++-++..+ +..++.+++.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999999998865 5678899999999999999999999999988755 4445555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-11 Score=69.89 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 224 LGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 224 ~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|+.||.+||++||++||+.|++|+|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3667777777777777777777777777777763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-09 Score=95.41 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+... ...+++.++.+|++.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHcCCHH
Confidence 3444444444444444444331 1123344444444455555555555555544432110 1233455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|.+.++++.+. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555443 244444455555555555555555555555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=93.46 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=131.1
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
+..++|...|+.+... ..-+...+..+...|.+.|++++|+++|+++.+.+-.....+++.|..+|.+.|++++|.
T Consensus 194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555666666555321 122355777788899999999999999999997643333567899999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR---VGQDDKQKLVLKKY 256 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~---~G~~d~a~~l~~~m 256 (284)
.+++.+.+.+ | +...++.++..|.+.|++++|+++|+++.+. .||..+++.++..+.. .|+.+++..++++|
T Consensus 270 ~~l~~~~~~~--p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEEY--P-GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHhC--C-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999998863 4 4455799999999999999999999998766 7999999999988875 56899999999999
Q ss_pred HHhc-CCCccccce-eeeecccccc
Q 023326 257 LSKW-KYIHFKGER-VRVRRDAWYE 279 (284)
Q Consensus 257 ~~~~-~~~~~~g~~-~~~~~~~~~~ 279 (284)
.++. .-.+.+.+. .+.....|++
T Consensus 345 ~~~~~~~~p~~~c~~cg~~~~~~~~ 369 (389)
T PRK11788 345 VGEQLKRKPRYRCRNCGFTARTLYW 369 (389)
T ss_pred HHHHHhCCCCEECCCCCCCCcccee
Confidence 8643 334444433 3455555543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-10 Score=68.09 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023326 154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMI 185 (284)
Q Consensus 154 g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m 185 (284)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=89.31 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
..||.+||.|+||-...+.|.+++.+-.....+- +..+||.+|.+-.-.-+ .+++.+|....++||..|||++|+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-YREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 5899999999999999999999999998887774 88999999987654433 889999999999999999999999
Q ss_pred HHHHcCCHHHHH----HHHHHhHHhcC
Q 023326 239 AFQRVGQDDKQK----LVLKKYLSKWK 261 (284)
Q Consensus 239 a~~~~G~~d~a~----~l~~~m~~~~~ 261 (284)
..++.|+++.|. +++.+|++-..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGV 308 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCC
Confidence 999999988755 56667766544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-07 Score=89.57 Aligned_cols=131 Identities=9% Similarity=0.071 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+...|.+.|++++|.+.|+++.+.. +.+..+++.+...+.+.|+ .+|..+++...+. .|.+..++..+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~ 843 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTL 843 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 356666777777777888888888888877653 3466777777777877777 7788887777764 34466677788
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
...|.+.|++++|+++|+++.+.+.. |..++..+..++.+.|+.++|.+++++|.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888889999999999888887654 88888888888999999999999888875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-09 Score=60.62 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-06 Score=83.54 Aligned_cols=132 Identities=10% Similarity=-0.052 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+...|.+.|++++|+..|+.+.+.. +.+...+..+...+.+.|++++|..+++.+.+. .|.+..+|..++
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 44555555556666666666666666655432 123445555555555666666666666655543 233455555555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+...|++++|+++++.|.+.+ ..+...+..+...+.+.|++++|.+.|..+.+
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555443 22344455555555555555555555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-08 Score=57.28 Aligned_cols=33 Identities=21% Similarity=0.577 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-05 Score=63.72 Aligned_cols=131 Identities=9% Similarity=0.018 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+..+-..+...|++++|...|++..+....+ ....+..+-..+.+.|++++|...+++..+.. |.+...|..+..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 177 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHH
Confidence 344444455555566666666665555432111 23344444455555566666666665555432 223444555555
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+...|++++|.+++++..+. ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555666666666666555544 222344444555555555666665555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=55.18 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT 158 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~ 158 (284)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888888887776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.4e-08 Score=54.81 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGV 226 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~ 226 (284)
|||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-05 Score=62.69 Aligned_cols=155 Identities=7% Similarity=-0.012 Sum_probs=120.1
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...++..-.. ..-+...+..+-..|...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 44 ~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 44 QGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred CCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 45555565555544221 12235566677778999999999999999988764 23556788888889999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+.+++..+....+.....+..+...|...|++++|.+.|++.....- .+...+..+...+...|++++|...+++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987644444556688888999999999999999999876532 2456788888999999999999999999876
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
.
T Consensus 198 ~ 198 (234)
T TIGR02521 198 T 198 (234)
T ss_pred h
Confidence 5
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=54.01 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA 157 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p 157 (284)
.+|+.+|.+|++.|++++|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-06 Score=80.70 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------------------CCHHHHHHH
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG--QG----------------------ATMGTYDTL 165 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~~----------------------p~~~ty~~L 165 (284)
+.+..+...+..|+-+||..+|..||..|+++.|- +|.-|.-.. +. |-.-||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 33444567788899999999999999999999998 877775332 11 557899999
Q ss_pred HHHHHhcCCHHH
Q 023326 166 LLAFDKDHRADE 177 (284)
Q Consensus 166 l~~~~~~g~~~~ 177 (284)
+.+|...||+..
T Consensus 90 l~ayr~hGDli~ 101 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHhccchHH
Confidence 999999998755
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00013 Score=63.96 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCC
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHR 174 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~ 174 (284)
.|+.+.|+.+|..+-+ ...+-......++..|-+..+|++|+++-+++.+.|-.+. ...|+-|-..+....+
T Consensus 120 aGl~DRAE~~f~~L~d----e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 120 AGLLDRAEDIFNQLVD----EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred hhhhhHHHHHHHHHhc----chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 5888888888876632 2334556778899999999999999999999998765554 3577788777878889
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++.|..++..-.+.. |.++..--.+=..+...|+++.|++.++...+....--..+...|..+|.+.|+.+++...+.
T Consensus 196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999887764 335554445557888999999999999999988655556688999999999999999999988
Q ss_pred HhHHhc
Q 023326 255 KYLSKW 260 (284)
Q Consensus 255 ~m~~~~ 260 (284)
++.+.+
T Consensus 274 ~~~~~~ 279 (389)
T COG2956 274 RAMETN 279 (389)
T ss_pred HHHHcc
Confidence 877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.7e-06 Score=71.21 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...|..+-..+.+.|+.++|+++|++.++. .| |....+.++..+...|+.+++.++++...+.. |.|...|..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~l 220 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDAL 220 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 3333444444445555555555555554443 23 23444445555555555555555554444432 2233334555
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
-.+|...|+.++|+.+|++.... .| |......+..++...|+.++|.++..+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred HHHhccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 55555555555555555554332 22 444444445555555555555554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=69.85 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
++...+..++..+.+.|+++++.++++...... ...+...|..+-..+.+.|+.++|.+++++.++. .|.|....+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 556667788888999999999999999987543 4567888888999999999999999999999986 4667888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++..+...|+.+++.++++...... ..|...+..+-.+|...|+.++|...|++..+...
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999999999999999998887664 44555778889999999999999999999876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=70.34 Aligned_cols=133 Identities=9% Similarity=-0.104 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...+..+=..+...|++++|...|++..+.+ |+ ...|..+-..+...|++++|...+++.++.. |.+...+..+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~ 412 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITK 412 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHH
Confidence 34455555556778899999999999888763 43 5567777778888999999999999988764 4344334445
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...+...|++++|++.+++..... .|+ ...+..+-.++...|+.++|.+.+.++....
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 555777899999999998876553 343 3345666677888999999999988876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00019 Score=70.68 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE----AESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
.+...+.+.|++++|+..|+...+.. .-+...+..+-..+...|++++ |...+++.++. .|.+...+..+...
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 293 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 33445556666666666666655442 2234555556666666666664 56666666653 35566677777777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.+.|++++|+..+++..+. .|+ ...+..+..+|.+.|++++|...++++.+.
T Consensus 294 l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777777777776654 343 345556667777788888888877777654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00036 Score=68.23 Aligned_cols=151 Identities=8% Similarity=-0.116 Sum_probs=119.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.|..++|...|+.. +...|+ ...|..+-..+...|++++|+..|+...+.. +-+..+|..+-..+...|++++
T Consensus 344 ~g~~~eA~~~~~ka-----l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 344 KGKHLEALADLSKS-----IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 35555555555433 223354 4466777777899999999999999987753 2356788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...|++.++. .|.+...|..+...|.+.|++++|+..|++.... .| +...|+.+-..+...|++++|.+.|++.
T Consensus 418 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 418 AGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999886 4667888888999999999999999999997754 45 4668888889999999999999999987
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 494 l~l 496 (615)
T TIGR00990 494 IEL 496 (615)
T ss_pred Hhc
Confidence 654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-06 Score=49.27 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG 154 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g 154 (284)
+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00058 Score=67.34 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=91.9
Q ss_pred cCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
|..++|...|+.+-. ..| +...+..+-..+.+.|++++|+..|+...+. .| +...+..+...+...|++++
T Consensus 90 g~~~~A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 90 SQPDAVLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred CCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHH
Confidence 444455555544421 122 3344555556677778888888888777654 23 45566777777777788888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|...+..+....-. +...+..+ ..+.+.|++++|+++++++....-.++...+..+..++...|++++|.+.+++..
T Consensus 163 A~~~~~~~~~~~P~--~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 163 AISLARTQAQEVPP--RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHhCCC--CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 87777777655322 33333333 2366777777777777776655433444455555566777777777777777766
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 240 ~~ 241 (656)
T PRK15174 240 AR 241 (656)
T ss_pred hc
Confidence 44
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=98.17 E-value=4e-05 Score=63.86 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=74.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
+.|.++=....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|..+.-.+ -.+.+-|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy------------------p~Qq~c~i 123 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY------------------PRQQECAI 123 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC------------------cHHHHHHH
Confidence 468899899999999999999999999999999987 4442 244444444322 13456699
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 216 ~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
+++++|+..|+.||..|+..|+..+++.+..-
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999988754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-05 Score=67.51 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRL 197 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~t 197 (284)
-+.......+..|.+.++++.|.+.++.|.+. ..|.. ..-|..++.. ...+.+|..+|++|.+.. +.+..+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHH
Confidence 44555566667777777777777777777654 23432 2223333222 235777777777776553 236666
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD-DKQKLVLKKYLSK 259 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~-d~a~~l~~~m~~~ 259 (284)
.|.+..++...|++++|.+++.+-.+..- -|..|...+|......|+. +.+.+++.+++..
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777777777776543321 1444666666666666666 5566677766644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=66.67 Aligned_cols=160 Identities=9% Similarity=0.013 Sum_probs=118.9
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-----------QGAT---MGTYD 163 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-----------~~p~---~~ty~ 163 (284)
..+..++|+..|+.+..-...........+..+..++.+.|++++|+++++.+.+.. -.|| ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 456666777776654321000000113455666777899999999999999998752 1233 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 023326 164 TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQR 242 (284)
Q Consensus 164 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~ 242 (284)
.+...+...|++++|.++++++... .|.+...+..+...+...|++++|++++++..+. .|| ...+..+...+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 6777788999999999999999876 4668888999999999999999999999987664 475 4566666678899
Q ss_pred cCCHHHHHHHHHHhHHhcC
Q 023326 243 VGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~~ 261 (284)
.|++++|+++++++.+...
T Consensus 440 ~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred hCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00064 Score=66.51 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...+..+-..+...|++++|+..|+..++. .|+ ...|..+-..+...|++++|...|++.++. .|.+..+|..+.
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg 406 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345566666678899999999999998865 454 568888888899999999999999999876 455788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|++.|++..+. .| +...+..+...+.+.|++++|...|++..+..
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998765 45 45677778888999999999999999987654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00039 Score=63.94 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.++..+...+++++|+.+|+++.+.. |++.. .|...+...++-.+|.+++++.++. .|.+....+.-...+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~--~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVAV--LLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHHH--HHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 66777777899999999999999885 66543 4777777778888999999998865 344777778888889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 209 DMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|+.+.|+++.+++.+. .|+.+ +|..|..+|.+.|+++.|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998765 78777 99999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0002 Score=53.46 Aligned_cols=74 Identities=9% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH--------DMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~--------G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
|...+++...-.+|..+++.|+.-|++.+||.++.+-++- +.+-+++.+|+.|...+++|+..||+.+|..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444112444444444443332 23445677888888888999999999988877
Q ss_pred HH
Q 023326 241 QR 242 (284)
Q Consensus 241 ~~ 242 (284)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 54
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0012 Score=67.67 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=94.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|++-.+. .|+...|..+-..+.+.|+.++|...+++.++. .|.+...++.+-..+...|++++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 34458888888888887755 467778888888888888999998888888875 46677788888888888999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|+++|++..+. .| +...+..+-.++...|++++|...+++..+.
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988887664 44 4557788888888999999998888877643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=63.27 Aligned_cols=155 Identities=10% Similarity=-0.052 Sum_probs=107.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~ 176 (284)
.+..++|...|+..- ...|+ ...+..+-..|...|++++|+..|++..+.. |+ ...+..++..+...|+++
T Consensus 351 ~g~~~~A~~~~~~Al-----~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQAN-----LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred ccCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHH
Confidence 344455555554332 23354 4556666777999999999999999988764 33 223334454567789999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~ 255 (284)
+|...+.++.+.. .|.+...+..+-..|...|++++|...+.++... .|+..+....+ ..|+..| |++...++.
T Consensus 424 eA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 424 DAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 9999999987653 2335556788888899999999999999887544 55555444444 4567777 588888888
Q ss_pred hHHhcCCCcc
Q 023326 256 YLSKWKYIHF 265 (284)
Q Consensus 256 m~~~~~~~~~ 265 (284)
+.+...-.++
T Consensus 499 ll~~~~~~~~ 508 (553)
T PRK12370 499 FLESEQRIDN 508 (553)
T ss_pred HHHHhhHhhc
Confidence 8776555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=67.95 Aligned_cols=120 Identities=10% Similarity=-0.062 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+.+....++..+...-+++++..++...... ...--..|.+++|..|.+.|..+.+..+++.=...|+-| |..+||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP-DNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC-ChhhHHH
Confidence 4555666666666677788888888877755 222223455688899999888888888888888888886 8888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
||..+.+.|++..|.+++.+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999988888888778888888888888776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00031 Score=68.82 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 156 ~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
.|+..+|+.+++.-..+|+++.|..++.+|.+.|..- +..-|-.||-| .|+...++.+++-|.+.|+.|+..||..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 4999999999999999999999999999999999864 54445566655 8999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHH
Q 023326 236 IASAFQRVGQDDKQ 249 (284)
Q Consensus 236 ll~a~~~~G~~d~a 249 (284)
.+-.+...|....+
T Consensus 277 yvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 277 YVIPQLSNGQTKYG 290 (1088)
T ss_pred HHHhhhcchhhhhc
Confidence 99888876654433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=52.33 Aligned_cols=78 Identities=8% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQ-GATMGTYDTLLLAFDKDH--------RADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~~~ty~~Ll~~~~~~g--------~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
..|..+...|++.....+|+.+++.|+ .|.+.+|+.+|.+.++.. .+-+.+.++..|+..+++| +..|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHHHHH
Confidence 445557788999999999999999999 999999999999988743 2445677899999999997 999999
Q ss_pred HHHHHHHh
Q 023326 200 RMISLYDH 207 (284)
Q Consensus 200 ~lI~~~~~ 207 (284)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0034 Score=59.53 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=116.2
Q ss_pred cCCchHHHHHHHHHH-HHH--ccCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHH
Q 023326 100 ELPNEKHAVYGALDK-WTA--WETEFPLIAA-AKALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLA 168 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~-~~~--~~~~p~~~~y-~~~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~ 168 (284)
|.+.+|+..++..-+ +.. ....|.+.+. +-+...|+..+++++|..+++.-.+. -+.++ ..+|+.|=..
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 666666655543333 222 1223344433 45666688899999999999875532 22333 3689999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CC--CCCHHHHHHHHHHHHhCCChhHHHHHHHH----HHHCCC-CCCHH-HHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQ----TR--SISKRLFSRMISLYDHHDMPNKIIEVFAD----MEELGV-RPDED-TVRRI 236 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~----~~--~~~~~tyn~lI~~~~~~G~~~~A~~l~~~----M~~~g~-~Pd~~-ty~~l 236 (284)
|-+.|++++|++++.+.+..- .. ...-..+|-|-..|-+.+..++|..+|.+ |+..|. .||+. ||..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 999999999999998886543 11 21234578899999999999999999997 555663 36554 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++|.|.++.+...+-
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999988744
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0019 Score=67.80 Aligned_cols=138 Identities=11% Similarity=-0.002 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+-..|.+.|+.++|+..|+...+.. +-+...+..+...+...|+.++|.+.++.+.+. .|.+..++..+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~l 677 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRV 677 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 344455667777899999999999999988763 236788999999999999999999999988764 45567778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVR--P---DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~--P---d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
-..+...|++++|.++|++.....-. | +...+..+...+...|+.++|...|+......++
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999998765322 2 3346666678889999999999999988755444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00023 Score=65.85 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=95.7
Q ss_pred HHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 146 VAKWMLS---KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 146 l~~~M~~---~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
++..|.+ .+.....+....+++.+....++++++.++..+...... ..-..|..++|..|...|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555543 345667889999999999999999999998888765221 012234579999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 222 EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 222 ~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..-|+-||.+|||.||+.+.+.|++..|.++..+|..+-.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~ 169 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE 169 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999875533
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0051 Score=63.15 Aligned_cols=150 Identities=11% Similarity=0.013 Sum_probs=106.2
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|...|+.+ ....|+...+..+-..+.+.|+.++|...|+...+.. ..+...+..+...+.+.|++++|
T Consensus 522 ~Gr~eeAi~~~rka-----~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 522 VEDYATALAAWQKI-----SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred CCCHHHHHHHHHHH-----hccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 34455555555433 1223444445555667888899999999998888764 22333333344445566999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
...+++.++. .| +...|..+-..+.+.|++++|++.|++..+. .| +...++.+-.++...|+.++|..++++..
T Consensus 596 l~~~~~AL~l--~P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLNI--AP-SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHh--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988875 35 5777888899999999999999999987665 45 44566777778999999999999998877
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 671 ~l 672 (987)
T PRK09782 671 KG 672 (987)
T ss_pred Hh
Confidence 65
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0026 Score=63.97 Aligned_cols=117 Identities=11% Similarity=0.138 Sum_probs=58.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.|...|++++|+++|+++.+..- -|...+..|...+.+.++.++|.+.++.+... .| +...|-.++..+...++..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp-~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DP-TVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc-chHHHHHHHHHHHhcchHH
Confidence 44455666666666666554421 12333445555555566666666666655543 22 3333333333333344444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+|++.++++.+. .| +...+..++.++.+.|....|.++..+
T Consensus 187 ~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 187 DALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 466666665554 23 333445555556666665555555443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0054 Score=56.82 Aligned_cols=157 Identities=10% Similarity=0.049 Sum_probs=104.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhc
Q 023326 95 VRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD--TLLLAFDKD 172 (284)
Q Consensus 95 ~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~--~Ll~~~~~~ 172 (284)
+....|..+.|++....-... ... ....|-..-.+..+.|+.++|.+.|.++.+. .|+...+. .....+...
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~---~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADH---AEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhc---ccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC
Confidence 333456666666554433221 111 1223333344447888899999998888764 45544333 334567788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC------------------------
Q 023326 173 HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP------------------------ 228 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P------------------------ 228 (284)
|+.+.|...++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 167 g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 167 NENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999888888764 5577778888888999999999998888887665432
Q ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 229 -----------------DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 229 -----------------d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+......+..++...|+.++|.+++++..++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2223345566777888888888888777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.004 Score=62.59 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=116.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|..++..... ....+...+..+-..+.+.|++++|..+|+..++.. +.+...+..+...+.+.|+.++
T Consensus 27 ~~g~~~~A~~~~~~~~~----~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 27 WAGQDAEVITVYNRYRV----HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 35666666655554431 233455567888888999999999999999987652 2345667788888999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...++++++. .|.+.. |..+-..+...|+.++|+..+++..+. .| +...+..+..++...|..++|.+.++..
T Consensus 102 A~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999987 455777 999999999999999999999998876 44 4445566777888899999999888754
Q ss_pred H
Q 023326 257 L 257 (284)
Q Consensus 257 ~ 257 (284)
.
T Consensus 177 ~ 177 (765)
T PRK10049 177 N 177 (765)
T ss_pred C
Confidence 4
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=59.97 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCCH--HH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY-DTLLLAF--DKDHRADEAESLWNMILHTQTRSISK--RL 197 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty-~~Ll~~~--~~~g~~~~A~~l~~~m~~~~~~~~~~--~t 197 (284)
+...+..+...+.+.|+.++|.+++++..+. .||.... ..++..+ ...++.+.+.+.++...+. .|.|. ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 6778888889999999999999999999876 3443321 0133333 3457888888888887765 35566 77
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..++-..|.+.|++++|.+.|+.-......||...+..+...+-+.|+.++|.+++++-
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999996555556899999999999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0029 Score=58.65 Aligned_cols=126 Identities=14% Similarity=0.084 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
++.....+...+.+.|+.++|..++++..+. .||.. -.++.+....++.+++.+..+...+. .|.|...+.++-
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 5556678888899999999999999998874 45542 22455555679999999999999876 466888899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++.+-
T Consensus 336 rl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999998865 799999999999999999999999998754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0021 Score=67.46 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.....+...|+.++|+.+++. .+.+...+..|-..+.+.|+.++|...|++.++. .|.+...+..+...|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 345668889999999999872 2445567778888899999999999999999986 466888999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 209 DMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|++++|+++++...+. .|+ ..++..+-.++...|+.++|.++++.+.....
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999976543 453 44667777889999999999999999887643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0025 Score=49.14 Aligned_cols=103 Identities=8% Similarity=0.019 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
...+...+.+.|+.++|.+.|+.....+ ..+...+..+-..+.+.|++++|..+++..++.+ |.+..+|..+-..|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 3344455777888888888888877653 3356777777777888888888888888877754 446666777777888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
..|+.++|+..|++..+. .|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 888888888888776654 35444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00096 Score=59.07 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023326 90 KALNLVRIVSELPNEKHAVYGALDKWTAWETE-FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA 168 (284)
Q Consensus 90 ~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~-p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~ 168 (284)
.+..++-.........+.+...+.++..-... .+....-..-..+...|++++|+++++.- -+.......+..
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi 140 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQI 140 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH
Confidence 34444433444444555666666553222222 12222222223456679999999988642 467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRL---FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~t---yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
|.+.++++.|.+.++.|.+.+ . |... ..+.|..+...+.+++|+.+|++|.+. ..++..+.+.+..++...|+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~--e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQID--E-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCS--C-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-
T ss_pred HHHcCCHHHHHHHHHHHHhcC--C-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999998763 2 3332 344455555556899999999998654 67889999999999999999
Q ss_pred HHHHHHHHHHhHH
Q 023326 246 DDKQKLVLKKYLS 258 (284)
Q Consensus 246 ~d~a~~l~~~m~~ 258 (284)
+++|.+++.+..+
T Consensus 217 ~~eAe~~L~~al~ 229 (290)
T PF04733_consen 217 YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0032 Score=62.20 Aligned_cols=130 Identities=13% Similarity=0.092 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..+-.+-.+..+.|+.++|..+++...+. .|| +.....+...+.+.+++++|....++..+. .|.+....+.+-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 566667777788899999999999988865 665 456677778888999999999999998876 455778888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.++.+.|++++|+++|++.... .|| ..++..+-.++-+.|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998873 444 678888888899999999999999887654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=57.65 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..|..+|....+.+..+.|..+|.+-++.+ +...++...++|.-+ -.++.+.|.+||+..++... .+...|...|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 467788888999999999999999988654 456666666666443 34678889999999998743 47888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDED----TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~----ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-+.+.|+.+.|..+|++.... .|... .|...|.-=.+.|+++.+.++.+++.+.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999997655 44444 899999999999999999999988887644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0038 Score=49.21 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT---MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK--RLFSRM 201 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~--~tyn~l 201 (284)
|..++..+ ..++...+...++.+.+.. .-+ ....-.+-..+...|++++|...|+...+....+ +. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHH
Confidence 44444445 4788899999999998763 222 1223334466778999999999999999876221 22 234557
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
...+...|++++|+..++......+ ....+...-+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888899999999999977443333 334556667889999999999998875
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0035 Score=49.50 Aligned_cols=99 Identities=9% Similarity=0.010 Sum_probs=80.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
-..+.+.|++++|...|+...... +.+...|..+-..+.+.|++++|...|+..... .|.+...|..+-.++.+.|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCC
Confidence 344788999999999999988653 236788888888999999999999999999975 46688889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
+++|++.|++-... .|+...|.
T Consensus 108 ~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHh--CCCChHHH
Confidence 99999999987654 56544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0039 Score=53.01 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=107.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhc---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GATM-GTYDTLLLAFDKD--- 172 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~~-~ty~~Ll~~~~~~--- 172 (284)
.+..++|...|+.+.... -..|. ..++..+-..|.+.|++++|+..|+.+.+..- .|.. .++..+-..+.+.
T Consensus 46 ~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred cCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 455556665555543211 01111 13445556678999999999999999987531 2222 2343344444443
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCCHHHH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCC-CC-
Q 023326 173 -----HRADEAESLWNMILHTQTRSISKRLF-----------------SRMISLYDHHDMPNKIIEVFADMEELGV-RP- 228 (284)
Q Consensus 173 -----g~~~~A~~l~~~m~~~~~~~~~~~ty-----------------n~lI~~~~~~G~~~~A~~l~~~M~~~g~-~P- 228 (284)
|+.++|.+.++.+++.+-. +...+ -.+-..|.+.|++++|+..|++..+..- .|
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 6789999999999876433 33222 1345668889999999999999876532 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
....+..+..++.+.|+.++|..+++.+..++.
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356888999999999999999999999987763
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0016 Score=45.16 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+-..+...|++++|+.+|++..+.. ..+...+..+-..+...+++++|.++++...+.. |.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence 3344666777777777777766542 1223555556666666677777777777666653 224455666666777777
Q ss_pred ChhHHHHHHHHHH
Q 023326 210 MPNKIIEVFADME 222 (284)
Q Consensus 210 ~~~~A~~l~~~M~ 222 (284)
+.++|.+.+.+..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0045 Score=51.68 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCCC--hhHH
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHDM--PNKI 214 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G~--~~~A 214 (284)
++.++++..++...+.. +.|...|..|-..|...|++++|...++...+.. |.+...|..+-.+ |...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 33444444444433321 2244455555555555555555555555554432 3344444444443 234444 2555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+++++..+..-. +...+..+-.++...|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554443222 333444444455555555555555555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=50.48 Aligned_cols=95 Identities=8% Similarity=0.031 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
+..+-..+...|++++|...|...+.. .|.+...|..+-..+.+.|++++|+..|++..+.. .-+...+..+-.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 445667788999999999999999875 56688999999999999999999999999988753 237778888999999
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999987654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=52.58 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...|+.+=..|...|++++|+..|+...+. .| +..+|..+-..+...|++++|.+.|+...+.. |.+.. .....
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~-~~~~~ 172 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPY-RALWL 172 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHH
Confidence 445555555555666666666666555543 23 23445555555555566666666665555432 22221 11111
Q ss_pred HHHHhCCChhHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~ 220 (284)
..+...++.++|++.|.+
T Consensus 173 ~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 122334555666666544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0083 Score=51.59 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=90.5
Q ss_pred cCCchHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWET-EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~-~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
......+.....+.+|.+--. +-+.+........|++.|++++|++...... +......=+..+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433322 2222334445555888888888887776521 223333334446677788888
Q ss_pred HHHHHHHHHcCCCCCCHHHHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFS----RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn----~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++.++.|.+-. +..|.+ +.|......+.+.+|+-+|++|-++ ..|+..+.+-...++...|++++|..+++
T Consensus 157 ~~~lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 157 EKELKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 88888887632 334444 3344444456778888888887543 67777888888888888888888888887
Q ss_pred HhHHh
Q 023326 255 KYLSK 259 (284)
Q Consensus 255 ~m~~~ 259 (284)
+...+
T Consensus 232 eaL~k 236 (299)
T KOG3081|consen 232 EALDK 236 (299)
T ss_pred HHHhc
Confidence 77644
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0077 Score=51.53 Aligned_cols=126 Identities=11% Similarity=0.007 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
...+.......++|++.+|+..|++.... -++|..+|+.+=.+|.+.|++++|..-|.+..+.... +....|-|-..
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms 177 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHH
Confidence 34445778899999999999999998754 4678999999999999999999999999999886443 55667888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
|.-.|+.+.|..++..-...+.. |...-..|.......|++++|+.+-.
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88889999999999998776544 55666777788899999999988764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0029 Score=43.76 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
|..+...+...|++++|..++++..+.. |.+...+..+...|...|++++|+++|++..... ..+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 5556677888999999999999998763 4355778889999999999999999999977654 224467888888999
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999877643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.004 Score=47.97 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=84.7
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 156 GA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 156 ~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
.| +......+...+.+.|++++|.+.|+.+.+.+ |.+...|..+-..|.+.|++++|.++|++....+ ..+...+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 44 34556677778889999999999999998864 5578889999999999999999999999876654 33566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+-..|...|+.++|.+.|+...+...
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 778899999999999999988877643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.014 Score=51.55 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=105.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 023326 93 NLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAA-KALRILRKRGQWLRVIQVAKWMLSKGQGATM------GTYDTL 165 (284)
Q Consensus 93 ~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~-~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~------~ty~~L 165 (284)
.+-..++...+.|-+.|-.|-. ..|..+-.+ ++=+.|.+.|.+|+|+++.+-+.+. ||. ...--|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~-----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQ-----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHh-----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 3334467788888888766643 112222222 3334588899999999999988875 432 222234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED----TVRRIASAFQ 241 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~----ty~~ll~a~~ 241 (284)
-.=|-..|-+|.|+.+|..+++.+-. ....--.|+..|-...++++|+++-+++...|-++..+ -|--|-..+.
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 44467789999999999999986654 44557889999999999999999999888776554433 2333334444
Q ss_pred HcCCHHHHHHHHHHhHH
Q 023326 242 RVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~ 258 (284)
...++|.|..++.+-..
T Consensus 192 ~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 192 ASSDVDRARELLKKALQ 208 (389)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 55677777777776653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0063 Score=45.34 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMIS 203 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~ 203 (284)
+-.....+.+.|++++|...|+.+.+..- ......+..+-..+.+.|++++|...|+.+...+-. +.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444556666777777777776665421 111234445666666677777777777766654322 112334555666
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 023326 204 LYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|.+.|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777766655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.016 Score=58.49 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-----QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT------- 190 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-----~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~------- 190 (284)
+..+-..+-.+|...++.++|+.+|+...... ..++......|..++..++++++|..+++.+.+.--
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 44444566666666666666666666665432 122344455666666666666666666666665210
Q ss_pred -----CCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 191 -----RSISKR-LFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 191 -----~~~~~~-tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+|.. .+..++..+...|++.+|++.++++... .| |.-....+-+.+...|..++|++.++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 001211 1234455566666666666666666322 44 5556666666666666666666666433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.018 Score=53.44 Aligned_cols=149 Identities=15% Similarity=0.026 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 023326 89 QKALNLVRIVSELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLL 166 (284)
Q Consensus 89 ~~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll 166 (284)
....++.....+..++|+..++.+- ...|+ +.-.......+.+.++.++|.+.|+.+... .|+ ....-.+-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~-----~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a 381 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLI-----AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHH
Confidence 3455555666788888888877653 23354 444446667799999999999999998876 566 34455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.+|-+.|+..+|..+++..... .|.|...|+.|-.+|...|+..+|..-..|+ |.-.|.+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~ 441 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRL 441 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCH
Confidence 7788899999999999888765 3558888999999999999999998877765 5567777
Q ss_pred HHHHHHHHHhHHhcCCCc
Q 023326 247 DKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 247 d~a~~l~~~m~~~~~~~~ 264 (284)
+.|...+....++.+...
T Consensus 442 ~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 442 EQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 777777777666655433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.015 Score=43.28 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-P-DEDTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-P-d~~ty~~ll 237 (284)
++-.+...+.+.|++++|.+.++.+++..-. +.....+..+...|.+.|++++|+++|++.....-. | ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4566777788899999999999999876432 112445777899999999999999999998765322 1 245677777
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..+.+.|+.++|.+.++++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 889999999999999999988765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.024 Score=53.88 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=109.9
Q ss_pred hcCCchHHHHHHHHHHH--HHc-cCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKW--TAW-ETEFPLIAAAK-ALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~--~~~-~~~p~~~~y~~-~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~ 167 (284)
.+..+.|+.+|+.--.- ... ...|.+.+... +=..|...+++++|..+|+++..- .+-++ +.|++.|=.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46666666666422211 011 12333333333 444588899999999999998752 22233 467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-----CCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHH---CCCCCCH----HHHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQ-----TRSISK-RLFSRMISLYDHHDMPNKIIEVFADMEE---LGVRPDE----DTVR 234 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~-----~~~~~~-~tyn~lI~~~~~~G~~~~A~~l~~~M~~---~g~~Pd~----~ty~ 234 (284)
+|++.|++++|+.+++.-++-. ..++.+ .-++.++..|+..+++++|..+++.-.+ .-..++. -+|+
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 8999999999988876654322 222232 3378889999999999999999986432 1123333 3899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|-..|-+.|++++|+++|++...+
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9999999999999999999988744
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0023 Score=49.36 Aligned_cols=81 Identities=9% Similarity=0.112 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR--------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~--------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
|..++.++|.++++.|+++..+.+.+..=.-... -|+..+-.+++.+|+.+|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5667888888888888888877776554211100 11444444444444444444444444444322
Q ss_pred -CCCCCCHHHHHHHHH
Q 023326 224 -LGVRPDEDTVRRIAS 238 (284)
Q Consensus 224 -~g~~Pd~~ty~~ll~ 238 (284)
-++.-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 233334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.015 Score=49.07 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
|.+.|+...|..-+++-++. .|+ .-+|..+-..|-+.|+.+.|.+-|+.-++.. |.+-.+.|-.=.-+|..|.++
T Consensus 45 YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChH
Confidence 55555555555555554443 232 2344444445555555555555555554432 223333444444455555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|...|++-...---| -..||..+.-...+.|+++.|++.|.+-.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 5555555544333222 22244444444445555555555555444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.035 Score=51.57 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 91 ALNLVRIVSELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 91 a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
...++....|....|++......+ ..|+ ...|-..-.+..+.|+.++|.+.|.+..+..-.++...--+....+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 334455556777777776654332 2343 3344455566778899999999999987653222223333446667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
...|+++.|...++.+.+.+ |.+..++-.+...|.+.|++++|.+++.++.+.++.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 88999999999999999875 557788999999999999999999999999988754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=46.40 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred HHcCCHHHHHHHHHHHHHc--C-CCCC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023326 135 RKRGQWLRVIQVAKWMLSK--G-QGAT------------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~--g-~~p~------------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 193 (284)
...|+.+.+.+.+.+.... | +-|+ ......++..+...|+.++|..+...++.. .|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~ 94 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL--DPY 94 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCC
Confidence 4556777777777776643 2 2222 244556666777899999999999999986 467
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHHHH
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADME-----ELGVRPDEDTV 233 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g~~Pd~~ty 233 (284)
+...|-.+|.+|.+.|+..+|+++|+++. +.|+.|+..|-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 89999999999999999999999999873 56999988763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.025 Score=47.97 Aligned_cols=137 Identities=9% Similarity=0.029 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-RLFSR 200 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~tyn~ 200 (284)
...+-.....+.+.|++++|...|++..+..- .|. ...+..+-..+-+.|++++|...++++++..-..+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444444559999999999999999877531 121 2466777888999999999999999999875432221 23444
Q ss_pred HHHHHHhC--------CChhHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 023326 201 MISLYDHH--------DMPNKIIEVFADMEELGVRPDED-TV-----------------RRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 201 lI~~~~~~--------G~~~~A~~l~~~M~~~g~~Pd~~-ty-----------------~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+-..|.+. |+.++|++.|++.... .|+.. .+ ..+-..|.+.|+.++|...++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444443 7899999999998765 33221 11 134456788899999999999
Q ss_pred HhHHhcCC
Q 023326 255 KYLSKWKY 262 (284)
Q Consensus 255 ~m~~~~~~ 262 (284)
+..+.+.-
T Consensus 191 ~al~~~p~ 198 (235)
T TIGR03302 191 TVVENYPD 198 (235)
T ss_pred HHHHHCCC
Confidence 99887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00085 Score=47.64 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G~~d~a~ 250 (284)
.|+++.|..+++.+.+..-..++...|-.+-..|.+.|++++|++++++ ....|+. .....+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~---~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK---LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC---HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665533100223334466666666666666666666 1122222 22223345566666666666
Q ss_pred HHHHH
Q 023326 251 LVLKK 255 (284)
Q Consensus 251 ~l~~~ 255 (284)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.024 Score=50.24 Aligned_cols=130 Identities=9% Similarity=-0.065 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..|...=..|.+.|++++|...|++..+.. +-+...|+.+-..+...|++++|...|+..++. .|.+..+|.-+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 335555556889999999999999988753 235789999999999999999999999999875 46577888889999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|++.|++-.+. .|+..........+...++.++|...|++....
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999997765 454332223333345677899999999775543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00079 Score=47.78 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQ-GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~-~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+|++++|+.+|+.+.+..- .++...+-.+-.+|.+.|++++|..+++. .+. .+.+....-.+-.+|.+.|++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 36899999999999998743 22455555588899999999999999988 322 222434344557889999999999
Q ss_pred HHHHHH
Q 023326 215 IEVFAD 220 (284)
Q Consensus 215 ~~l~~~ 220 (284)
+++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.04 Score=49.67 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH--HHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDE--DTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~--~ty~~ll 237 (284)
....+-..+...|++++|...+++..+.. |.+...+..+-..|...|++++|+..+++.....- .|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 33344455666777777777777777643 44555666777777777777777777776554321 2332 2344566
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 023326 238 SAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~ 257 (284)
..+...|+.++|..++++..
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 66777777777777777763
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0024 Score=60.82 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 193 (284)
|.+++.. |.-+++.+.|++.|++-.+. .| .+++|+.+=+-+.....+|.|...|+.-+... |.
T Consensus 424 Wca~GNc------------fSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~r 487 (638)
T KOG1126|consen 424 WCALGNC------------FSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PR 487 (638)
T ss_pred HHHhcch------------hhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--ch
Confidence 8888888 99999999999999887754 44 56777776666677777777777766554322 22
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+-..|--|-..|.+.++++.|+--|++- ..+.| +.+....+-..+-+.|+.|+|.+++++.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 3333333444555555555555555442 22333 3333333444445555555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.042 Score=44.51 Aligned_cols=82 Identities=7% Similarity=0.093 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
|..+-..|...|++++|+..|++..+..-.+. ...+..+-..+.+.|++++|...+.+.++. .|.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 33444448889999999999999887543332 467888888899999999999999998885 34467777777788
Q ss_pred HHhCCC
Q 023326 205 YDHHDM 210 (284)
Q Consensus 205 ~~~~G~ 210 (284)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.018 Score=46.35 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA--TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD----- 206 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p--~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~----- 206 (284)
+...|++++|+..|+......-.| ...+|..+-..+.+.|+.++|...++..... .|....+++.+...|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHH
Confidence 778899999999999887653222 2357888888889999999999999888875 3445566777777777
Q ss_pred --hCCChhHHHHHHHH
Q 023326 207 --HHDMPNKIIEVFAD 220 (284)
Q Consensus 207 --~~G~~~~A~~l~~~ 220 (284)
..|+++.|+..+++
T Consensus 123 ~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHcccHHHHHHHHHH
Confidence 77888876666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=52.41 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=83.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+...|++++|+++|++.++.. .-+...|..+-.+|.+.|++++|...++..++. .|.+...|..+-.+|.+.|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 677899999999999998763 225678888888999999999999999999886 45578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
|+..|++.... .|+......++.-|
T Consensus 89 A~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999998765 56555555555433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=45.71 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLS---------------KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~---------------~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
|..++..+|-++++.|+++....+.+..-. ....|+..+..+++.+|+.+|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345788899999999999999998876521 12458999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCC
Q 023326 188 TQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 188 ~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
.+-.|.+..+|..|+.-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 98888889999999976655544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=51.82 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=114.1
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD-TLLLAFDKDHRADEA 178 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~-~Ll~~~~~~g~~~~A 178 (284)
|...+|++.+. .++...|-+.||-.+-+.|.+..+.+.|+.+|.+-++. .|-.+||- -+-..+-..++.++|
T Consensus 237 gm~r~Aekqlq-----ssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 237 GMPRRAEKQLQ-----SSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred cChhhhHHHHH-----HHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHH
Confidence 45555555443 23556688889999999999999999999999887654 56555554 344556667889999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+++....+.. |.++...-++-.+|...|+.|.|+..++++.+.|+. +..-|+.+--.|.-.+++|.+.--|.+...
T Consensus 310 ~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 310 LQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 99999887754 447777777888899999999999999999999987 556677777777788899988887776654
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
-
T Consensus 387 t 387 (478)
T KOG1129|consen 387 T 387 (478)
T ss_pred h
Confidence 3
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.015 Score=55.52 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+.|-.+-..|-.+|.++.|+..|++-++. .|+ ...||.|-.++-..|++.+|...++.-... .|.-....|-|-.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgn 362 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGN 362 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 33444444577788888888888887754 454 457888888888888998888888877654 2323444566777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|...|++++|..+|..-. .+.|+- ..++.|-..|-..|++++|...+.+..
T Consensus 363 i~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 7777777777777776543 234443 356677777777777777776665544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.039 Score=46.02 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF-DKDHR--ADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~-~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+...+..+-..|...|++++|+..|+...+.. .-|...+..+-.++ ...|+ .++|.+++++..+.+ |.+..++.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHH
Confidence 45555555556999999999999999888764 22566777776654 67777 599999999999864 55888899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
.+-..+...|++++|+..|+++.+. ..|+..-+.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 9999999999999999999999766 344554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.054 Score=50.15 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
|.-+|-+ |..-++...|++-++.-.+-. +-|-..|=.|=.+|.-.+...=|+-.|.+-.. ++|.|
T Consensus 367 WTLmGHE------------yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD 431 (559)
T KOG1155|consen 367 WTLMGHE------------YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND 431 (559)
T ss_pred HHHhhHH------------HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc
Confidence 7778888 999999999999999887642 44778899999999999998889999988776 67889
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|.+|-..|-+.+++++|++.|..-...|-. +...|..|-..|-+.++.++|.+.|++..+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877744 77899999999999999999999998887755
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.026 Score=52.10 Aligned_cols=113 Identities=6% Similarity=-0.014 Sum_probs=88.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..+.|..+|+.+.. ..|++. ..+...+...++-.+|++++++..+. .+-+....+.-...|.+.++.+.|
T Consensus 182 t~~~~~ai~lle~L~~-----~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE-----RDPEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred cccHHHHHHHHHHHHh-----cCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3455666777776642 235543 34777788888999999999998864 223566666666778899999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
..+..+.++. .|.+..+|..|..+|.+.|++++|+-.++.|
T Consensus 254 L~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999985 5768889999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.046 Score=49.50 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+..-..++.-+.+.|+.++|.++..+-.+.+..|+..+ +-.+.+-++.+.-.+..++-.... |.+.-.+.+|=.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHH
Confidence 44455788889999999999999999999888887332 334556666666555555554443 335577999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|.+++.+.+|.+.|+. ....+|+..+|+-+-+++.+.|+.++|.++.++-.
T Consensus 337 L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999994 55679999999999999999999999999998765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.17 Score=42.87 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
.+|..|++++|.+.|++-...-.-| -..||..+.-+..+.|+.+.|+..|..-.+.. |....+.-.|-.-..+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccc
Confidence 3899999999999999987763222 24578888777789999999999999888764 33455577888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
-.|...++.....|. ++..+....|.--.+.|+.+.+.+.=..+.+.+.+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999998877766 99999999999999999999988888777777653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.088 Score=48.79 Aligned_cols=157 Identities=9% Similarity=0.092 Sum_probs=121.7
Q ss_pred HhcCCchHHHHHHHHHH------------------------------HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDK------------------------------WTAWETEFPLIAAAKALRILRKRGQWLRVIQVA 147 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~------------------------------~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~ 147 (284)
-..+.+.|+.+|+.+.. -...+...-+.|+-++=.-|.-.++.++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 35677888888887765 011122222333334445566678899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 148 KWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 148 ~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
++-++.+- -....|+.+=+-|...+....|.+-++.-++. .|.|-..|=.|=.+|.-.++..-|+-.|++-.+ ++
T Consensus 354 kRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~k 428 (559)
T KOG1155|consen 354 KRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LK 428 (559)
T ss_pred HHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cC
Confidence 99887632 23467777888899999999999999999885 466999999999999999999999999998544 57
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 228 P-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 228 P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
| |...|.+|-..|.+.++.++|.+.|.....-
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7 7889999999999999999999999876644
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.071 Score=51.02 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.++..+-..|-..|+.++|++..++-++. .|+ +..|..--..+-+.|++++|.+.+++-.+.... |...=+-.+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNsK~aK 270 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHHHHHH
Confidence 35556667788999999999999988876 576 567888888899999999999999999987665 8887788889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC--CHHH---H---HHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP--DEDT---V---RRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P--d~~t---y---~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.++|++++|.+++...-..+..| |..- . .-.-.+|.+.|+...|.+.|....+.+.
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999887766544 2221 1 2234578899999999998887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.029 Score=48.82 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=69.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHH
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+.+.++=...-++.|.+-|+.-|..+|+.||+.+-|..-+- ..+|....-.+ | .+-+=+
T Consensus 83 r~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F~HY--P----------------~QQ~C~ 142 (406)
T KOG3941|consen 83 RGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVFLHY--P----------------QQQNCA 142 (406)
T ss_pred cccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHHhhC--c----------------hhhhHH
Confidence 345678888888899999999999999999999887644321 12222222111 1 233448
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
++++++|+..|+.||-.+--.||.++++.|..-
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 899999999999999999999999999998754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.047 Score=54.05 Aligned_cols=135 Identities=11% Similarity=0.116 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
++.-|..+-.+|...|++.+|+.+|..+...-.--+.+.|-.+-..|-..|..++|.+.|+..+.. .|.+.-.--+|-
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~La 490 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLA 490 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHH
Confidence 455677888889999999999999999998766667889999999999999999999999999875 455655567788
Q ss_pred HHHHhCCChhHHHHHHHHH--------HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADM--------EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M--------~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.|-+.|+.|+|++++..| +..+..|+...-.-..+.+...|+.++-..+-..|...
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8899999999999999995 34456777777777788889999998866666666543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.071 Score=49.53 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=98.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|..++|+..++.+... .| |+.........+.+.++.++|.+.++.++.. .|.....+-.+-.+|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 55778999999999998865 45 4555556667789999999999999999986 4545666788889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|+.++++-... ..-|...|..|-.+|...|+..++..-..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999986544 44588899999999999999999988776664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0065 Score=40.86 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=22.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
+.|++++|+++|+.+.+.. +-|...+..+...|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555554444331 11333444444444445555555554444444
|
... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.14 Score=53.25 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMI 202 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI 202 (284)
..|..|...|.+.+.+++|-++|+.|.+. +.-....|......+.+..+-+.|++++.+-.+. .|- -+..-.-.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 45668888899999999999999999875 2234456777777777766666666665554432 121 112222333
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..-.++|+.+++..+|+......-+ -..-|+..|+.=.+.|..+.++.+|++..
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3334445555555555544433111 23345555555555555555555554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.056 Score=51.84 Aligned_cols=132 Identities=11% Similarity=0.157 Sum_probs=96.1
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 119 ETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 119 ~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
...|+ ...|+.+-.++-..|++.||.+.|..-+.. .|+ .-..+.|-..+...|.+++|-.+|..-.+. .|.-..
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aa 389 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAA 389 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--Chhhhh
Confidence 34454 467788888888899999999999887654 454 356788888899999999999988877664 333445
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.+|-|-..|-+.|++++|+..+++-. .|+|+-. .|+.+-..|-..|+++.|.+.+.+.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 57888888888888888888888743 3566543 6666666677777777766666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=56.83 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=54.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|....|..+|+.+..|...+.. |+..|+.++|..+..+..+ -+||..-|..|.+......-+++|
T Consensus 411 lGitksAl~I~Erlemw~~vi~C------------Y~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 411 LGITKSALVIFERLEMWDPVILC------------YLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred cchHHHHHHHHHhHHHHHHHHHH------------HHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 47777788888888888877777 9999988899888888777 378888888888776665556666
Q ss_pred HHHHH
Q 023326 179 ESLWN 183 (284)
Q Consensus 179 ~~l~~ 183 (284)
.++++
T Consensus 477 wElsn 481 (777)
T KOG1128|consen 477 WELSN 481 (777)
T ss_pred HHHhh
Confidence 66643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.063 Score=51.49 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=94.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.|.++++.|+--|+.-.+-+ +-|.+....+...+-+.|+.|+|..++++-....-+ |.-.-=-.+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k--n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK--NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC--CchhHHHHHHHHHhhcchHH
Confidence 999999999999998876543 225677777778888999999999999999876544 44333345566777899999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 214 IIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
|+..++++++. .||.. .|-.+-..|.+.|+.+.|..-|..+.+
T Consensus 576 al~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999999875 77665 566777899999999999888876653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.16 Score=48.69 Aligned_cols=136 Identities=6% Similarity=-0.056 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 023326 120 TEFPLIAAAKALRILRKRG-----QWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKD--------HRADEAESLWNMI 185 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g-----~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~--------g~~~~A~~l~~~m 185 (284)
...+...|...+.+..... ..++|.++|++..+. .|| ...|..+-.++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457789999999866532 377999999998876 565 34444433333221 1233344444443
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 186 LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 186 ~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
......+.+...|.++--.+...|++++|...|++..+.. |+...|..+-..|...|+.++|.+.+++-.+-
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3332344466778888666677899999999999988775 78889999999999999999999999876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.086 Score=47.49 Aligned_cols=124 Identities=10% Similarity=0.064 Sum_probs=85.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDT---LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~---Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...|++++|.+++++..+.. +-|...+.. +.......+..+.+.+.+.. .....|.....+..+-..+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 667899999999999988762 223344442 11111224555555555554 122234344455566678899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+++|++.+++..+.. ..+...+..+-..|...|++++|...+++..+.+.
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 999999999988763 22456777888899999999999999998877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.035 Score=49.27 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=104.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+=+.|.+.|...+|...|+.-++. .|-+.||-.|-++|-+..+...|..++.+-++. .|.++.-..-+-..+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 334599999999999999987776 566778888999999999999999999988775 5656665567778888899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.++|.+++++..+.. .-++....++-.+|.-.++.|.|++++.++..-..
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 9999999999977653 23566777888889999999999999999876644
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.08 Score=42.57 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 141 LRVIQVAKWML-SKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 141 ~~A~~l~~~M~-~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+...+..+. ..+..-....|..+...+...|++++|...|++.+.....+. ...+|..+-..|.+.|++++|++.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443 222222356777888888889999999999999987643332 2357888999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHH-------HcCCHHHHHHHHHHh
Q 023326 219 ADMEELGVRP-DEDTVRRIASAFQ-------RVGQDDKQKLVLKKY 256 (284)
Q Consensus 219 ~~M~~~g~~P-d~~ty~~ll~a~~-------~~G~~d~a~~l~~~m 256 (284)
++.... .| ...++..+...+. ..|+++.|...+++-
T Consensus 96 ~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 987754 33 3445666666666 788888666666543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=48.98 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPLIAAAKALRILRKR----------------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~----------------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~ 170 (284)
=++.+|..|.+.+..-|+.+|+.||..+=+. .+.+-|++|+++|...|+.||..|+..|++.|+
T Consensus 70 FI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 70 FIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 4556777788888888999999888876542 244678888888888888888888888888887
Q ss_pred hcCC
Q 023326 171 KDHR 174 (284)
Q Consensus 171 ~~g~ 174 (284)
+.+.
T Consensus 150 ~~s~ 153 (228)
T PF06239_consen 150 RKSH 153 (228)
T ss_pred cccH
Confidence 7664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=41.70 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRR 235 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ 235 (284)
....|..+-..+...|++++|...|++.++..-.+++ ...|..+...|.+.|++++|+..+++.... .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3456778888888999999999999999876543322 467899999999999999999999987764 44 3445666
Q ss_pred HHHHHHHcCC
Q 023326 236 IASAFQRVGQ 245 (284)
Q Consensus 236 ll~a~~~~G~ 245 (284)
+...|...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 6667777766
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.19 Score=38.30 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~ 210 (284)
+-..|+.++|+.+|++-...|.... ...+-.+-..+-..|++++|..++++.....-. +.+....-.+--++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 6678999999999999999887665 345666777788899999999999999876322 1122222333347788899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.++|++.+-.... ++..-|.--|..|+
T Consensus 91 ~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 91 PKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 9999998876543 23335555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.056 Score=42.45 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
+-..+...|++++|...|++.......|+. ...-.|-..+...|++++|...++..... +.....+...-..|.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHH
Confidence 335688899999999999999987633332 34445667788899999999999774332 2244557778899999
Q ss_pred CCChhHHHHHHHH
Q 023326 208 HDMPNKIIEVFAD 220 (284)
Q Consensus 208 ~G~~~~A~~l~~~ 220 (284)
.|+.++|...|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.14 Score=50.87 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=96.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~ 176 (284)
.|..++|+.+++... ...|+-. ....+...+.+.+++++|+..+++.... .|+ ....+.+=.++.+.|+.+
T Consensus 99 ~g~~~ea~~~l~~~~-----~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 99 AHRSDEGLAVWRGIH-----QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred cCCcHHHHHHHHHHH-----hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchH
Confidence 466667776666553 3445544 4456777799999999999999999876 455 455566667778899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+|..+|+.+... .|.+..++..+-.++-..|+.++|...|++-.+. ..|-..-|+.++
T Consensus 172 ~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 172 QADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999983 3557888999999999999999999999986543 233444544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.076 Score=48.46 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=75.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~ 245 (284)
......|++++|..+|++.++. .|.+...|..+-.+|.+.|++++|+..+++..+. .| +...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 3455789999999999999986 4558888999999999999999999999998775 44 56678888889999999
Q ss_pred HHHHHHHHHHhHHh
Q 023326 246 DDKQKLVLKKYLSK 259 (284)
Q Consensus 246 ~d~a~~l~~~m~~~ 259 (284)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.024 Score=38.03 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
.+.|++++|.++|+++.+.. |.+...+-.+...|.+.|++++|.++++++... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46799999999999999874 558888889999999999999999999998766 56655665554
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.025 Score=37.65 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+.+.|++++|..+|+++++.. |.+...|..+-..+.+.|++++|..+|++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444432 334444444444444444444444444444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.35 Score=41.54 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=98.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
.=..+...|+-+.+..+....... ..-|....+.+.....+.|++.+|...+.+.... .|+|..+||.+=-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHcc
Confidence 334466677777777766654432 2335566777888899999999999999999874 5779999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++++|..-|.+-.+.-.. +...+|.|.-.|.-.|+.+.|..++..-...
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999887665322 4556778888888899999999998766543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.13 Score=44.92 Aligned_cols=98 Identities=8% Similarity=0.044 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM----GTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFS 199 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn 199 (284)
..|...+..+.+.|++++|+..|+.+.+. .|+. ..+--|-..|...|++++|...|..+++.+-. +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555556666666666666553 1221 12333444455566666666666666654322 11112222
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
-+...|-..|+.++|.++|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444556666666666555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.91 Score=41.34 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=99.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 023326 95 VRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR 174 (284)
Q Consensus 95 ~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~ 174 (284)
.+...|....|++.... + +...+-.+..|....++--+.|+.+.|=+.+.+..+.--.++...+-+.-......|+
T Consensus 93 ~~l~eG~~~qAEkl~~r---n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 93 LKLFEGDFQQAEKLLRR---N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHhcCcHHHHHHHHHH---h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 33344555555544433 2 2223334556666666777777777777777777666445566666677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------------------------
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD------------------------- 229 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd------------------------- 229 (284)
...|..=++++.+++-. +..+-..+...|.+.|+++....++.+|.+.|+--|
T Consensus 169 ~~aA~~~v~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 169 YPAARENVDQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred chhHHHHHHHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 77777777777776433 555577777777777777777777777766654322
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 230 ----------------EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 230 ----------------~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...-.+++.-+.++|..|+|.++..+-.++
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 222344455566778888888777665544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.33 Score=45.05 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHH-HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 193 ISKRLFSRMISL-YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 193 ~~~~tyn~lI~~-~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|+.+-|..||.. +-+.|++++|++++++.... +.-|......|++.|...|.-| +.++-++++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d-~key~~kle 720 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD-AKEYADKLE 720 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh-HHHHHHHHH
Confidence 488888888854 45678888888888887544 5557778888888888888754 555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.79 Score=42.66 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=112.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+.+++|...|-.+.. +..-++...-.+-..|--..+..+|++++.+.. .+.| |......|-..|-+.|+-.+
T Consensus 537 ~~~ldeald~f~klh~----il~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHA----ILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred hcCHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhh
Confidence 3555556555554432 112234444455666777788888888875543 4444 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF-QRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~-~~~G~~d~a~~l~~~m 256 (284)
|.+.+-.--. ..|.+..|---|-.-|....-.++|+..|++ ..-++|+..-|-.+|..| .+.|++++|..++...
T Consensus 611 afq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ek--aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEK--AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9887543222 2366888877788888888889999999987 345899999999999765 5789999999999999
Q ss_pred HHhcC
Q 023326 257 LSKWK 261 (284)
Q Consensus 257 ~~~~~ 261 (284)
.+++.
T Consensus 687 hrkfp 691 (840)
T KOG2003|consen 687 HRKFP 691 (840)
T ss_pred HHhCc
Confidence 88865
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.26 Score=51.37 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD-TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~-~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...|...+..+.++.+-+.|.+++.+-++.--+-.++-+- -....--+.|+.+.++.+|+.++..+-+ -.-.|+..|
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYi 1641 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYI 1641 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--chhHHHHHH
Confidence 3455666677999999999999998877652222233222 2223335789999999999999998755 344599999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
..-.++|+.+.+.++|++....++.|--. -|.-.|..=-..|+-..++.+-.+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 99999999999999999999999887544 778888777777776555554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.21 Score=43.58 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC-CHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRP-DEDTVRR 235 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~P-d~~ty~~ 235 (284)
...|..-+..+.+.|++++|...|+.+++.+-.. .....+--+-..|...|++++|...|+.+...- -.| ....+--
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567777777777899999999999999886432 113456677888999999999999999997642 111 2233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+...+...|+.++|.++|+...+.|.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55667799999999999999998875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.52 Score=44.70 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
+|-..|..-.+..-++.|..+|.+..+.+..+ .++.++++|.-+|. ++..-|.++|+-=...... +..--+..+.-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 44466676777777899999999999998877 88899999988876 6888899999865555432 33334777888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.+.|+-..|..+|++....++.||.. .|..+|+-=...|++..+.++-+++...+.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 889999999999999999887777664 899999999999999999999888877665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=51.08 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=104.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKG--QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g--~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
++-++.+....+....+..-+.+.. +.-++..|.-+-.+|-..|.+++|..+|..+....... +...|--+-..|-.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHH
Confidence 3344555555555556666666666 44467889999999999999999999999999877665 67789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCccccceeeeecccccc
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWYE 279 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~~~g~~~~~~~~~~~~ 279 (284)
.|..++|++.|+..... .||.. .=-+|-.-+-+.|+.|+|.+.++.|. +.+|. .++..+|-+
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~------~~D~~--~~e~~a~~~ 524 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII------NPDGR--NAEACAWEP 524 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc------CCCcc--chhhccccH
Confidence 99999999999997655 55443 33344556789999999999999887 22332 455566654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.31 Score=45.58 Aligned_cols=131 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCH--H
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS----ISK--R 196 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~--~ 196 (284)
++++|-.+=.+.-+.+++++++..|++-++. ++-....||-.-..+...++++.|.+.|+.-++..-.. .+. .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 5666666666677778888888888887765 33345677777777888888888888888776542220 011 1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+--.++-.= -.+++..|+.++++-.+..-+ -...|.+|-.--.+.|+.++|.++|++-
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 112222211 237888888888776544322 3457888888888889999999998753
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.22 Score=39.81 Aligned_cols=86 Identities=9% Similarity=-0.024 Sum_probs=66.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|++++|..+|+-+..- .| +..-|-.|=..|-..|++++|...|....... |.|...+-.+-.+|...|+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHH
Confidence 88889999999999988765 34 34455556566666789999999998888765 457777777888888899999
Q ss_pred HHHHHHHHHHH
Q 023326 213 KIIEVFADMEE 223 (284)
Q Consensus 213 ~A~~l~~~M~~ 223 (284)
.|.+.|+.-..
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 99988886443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.32 Score=37.96 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=68.8
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-------CH-------------HHHHHHHHHHHhCCChhHHH
Q 023326 159 MGTYDTLLLA---FDKDHRADEAESLWNMILHTQTRSI-------SK-------------RLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 159 ~~ty~~Ll~~---~~~~g~~~~A~~l~~~m~~~~~~~~-------~~-------------~tyn~lI~~~~~~G~~~~A~ 215 (284)
+..|-.++.. ....++.+.+...+.+....+--+. +. .....++..+...|++++|+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 3445555432 3456777888887777766543211 11 22467777888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 216 ~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.+.+.... .-|...|..+|.+|...|+...|.++|+.+.+.
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999987663 238889999999999999999999999988643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.051 Score=36.12 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..+.+.|++++|+..|++.++.. | +...+..+-..+.+.|++++|..+|++.++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35889999999999999999875 5 5678888888899999999999999999875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.61 Score=44.72 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSK----G----------QGATMG--TYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g----------~~p~~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..|+.+-..|....+.+-..+++..+... | -.|... ++.-|-..|...|++++|.++.++-++.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34555555566555566666666665532 1 124443 4455566678899999999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|..+..|.+--..|-+.|++++|.+.+++-+..... |-+.-+-....+-++|++++|.+++....+.-
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 4656888999999999999999999999998777544 77788888889999999999999998876554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.085 Score=46.47 Aligned_cols=98 Identities=6% Similarity=0.086 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
.+|..+|...-+.+.++.|+.+|.+..+.+.....+....++|.- ...++.+.|.++|+..... +.-+..-+...|+-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998654332344444555543 3357888899999997755 45577788889999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.+.|+.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999987654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.094 Score=52.47 Aligned_cols=127 Identities=6% Similarity=0.048 Sum_probs=94.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..++..|++.+|..+|.+..+... -+.-+|-.|-+.|...|++..|.+.|+...++.....+..+.+.|-.++-+.|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 448889999999999999998764 2334688889999999999999999988877766656788889999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------HHcCCHHHHHHHHHHhHHh
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAF------------------QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~------------------~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|.+.+..-...-..=..+-||..+-.. ...+.++.|.++|.+|...
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876654443332334555544322 1224566677777777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.99 Score=40.57 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=76.4
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRG-QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+.+.| .+++++..++.+.+..- -+..+|+-.--.+.+.|. .+++..+++.+++.. |.|..+|+..--.+.+.|+
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhh
Confidence 34456 57999999999987643 244566655444555555 367788898998865 4488899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
++++++.++++.+.... |...|+-....+.+.
T Consensus 158 ~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 158 WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 99999999999887655 444555544445444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.32 Score=38.85 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=70.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
..+...|++++|+++|+-+... .|.+..-|-.|-..+-..|++++|++.|........ =|...|-.+-.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3356778899999998888764 344666677788888888899999998888777653 3666777777888888999
Q ss_pred HHHHHHHHHhHHhc
Q 023326 247 DKQKLVLKKYLSKW 260 (284)
Q Consensus 247 d~a~~l~~~m~~~~ 260 (284)
+.|.+-|+......
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888776554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.041 Score=38.03 Aligned_cols=64 Identities=16% Similarity=0.380 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEE----LGV-RPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~----~g~-~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+|+.+-..|...|++++|++.|++..+ .|- .|+ ..++..+-..|...|++++|.+++++-.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34577777888888888888888877543 231 233 44677777778888888888888776543
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.3 Score=38.11 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=88.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+-..|++++|+++++.+++.. +-|.++|--=|...-..|.--+|.+-+++..+.-. .|...|--+-..|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHHHH
Confidence 445789999999999999886 44677777666666666666678877787777643 489999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHH---HHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPD-EDTVRRIASAF---QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd-~~ty~~ll~a~---~~~G~~d~a~~l~~~m~~~ 259 (284)
|.-.+++|.-. +|. ..-|..+-..+ +...+.+-+.+++++-.+-
T Consensus 173 A~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999998754 453 33334444433 3444566677777766544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.6 Score=41.13 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.|..++-..+|++.... ++-..+.|.-....+-..|++..|..++.+..+.. |.+...|-.-+..-..+.++|+|..
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHH
Confidence 46667777777776654 22233445555555667899999999999988864 4478889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCcc
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHF 265 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~~ 265 (284)
+|.+-.. ..|+...|.--+.----.|++|+|.+++++-.+.|...|.
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K 686 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK 686 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH
Confidence 9998654 6788888887777777889999999999999988876654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.4 Score=42.16 Aligned_cols=161 Identities=10% Similarity=0.083 Sum_probs=89.9
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEF--PLIAAAKALRILRKRGQWLRVIQVAKWMLS----KGQGAT-MGTYDTLLLAFD 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p--~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~----~g~~p~-~~ty~~Ll~~~~ 170 (284)
..+...+|...|....++......+ -...|..+...|.+. ++++|+..+++-.+ .|-... ...+..+-..|-
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE 125 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3455666655554443322111111 112333333334333 66677666665432 231111 234555555566
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHH-HHHHHHHH
Q 023326 171 KD-HRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-----RPDED-TVRRIASA 239 (284)
Q Consensus 171 ~~-g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-----~Pd~~-ty~~ll~a 239 (284)
+. |++++|.+.|.+-.+.+.... ....+.-+...+.+.|++++|+++|++....-. +.+.. .|-..+-.
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~ 205 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC 205 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 66 899999999888766543321 124467888999999999999999999876533 22332 22233335
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
+...|+...|.+.+++....
T Consensus 206 ~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 206 HLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHGTT
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 55678999999999887754
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.1 Score=39.81 Aligned_cols=86 Identities=9% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhCCCh
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--D----HRADEAESLWNMILHTQTR--SISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--~----g~~~~A~~l~~~m~~~~~~--~~~~~tyn~lI~~~~~~G~~ 211 (284)
+++.+.+++.|++.|++-+.++|-+..-.... . ..+..|..+++.|.+.+.- .++-.++.+|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555566666666666665555543222222 1 1344466666666555432 1233335555444 22222
Q ss_pred ----hHHHHHHHHHHHCCCC
Q 023326 212 ----NKIIEVFADMEELGVR 227 (284)
Q Consensus 212 ----~~A~~l~~~M~~~g~~ 227 (284)
++++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 3445555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.34 Score=43.55 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
.+.+..|.-+...|+...|.++..+.+ .|+-.-|-..|.++++.+++++-+++... -+ +..-|-..+..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kK--sPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KK--SPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CC--CCCChHHHHHH
Confidence 456677777888888888876654442 47888888999999999999886665432 12 22448888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+.+.|+.++|..+... .++..-+..|.++|++.+|.+.--+.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8899998888888777 23356677788888888887664443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.16 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD-MPNKIIEVFAD 220 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G-~~~~A~~l~~~ 220 (284)
..+|..+=..+.+.|++++|...|++.++.. |.+...|..+-.+|.+.| ++++|++.|++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3444555555555555555555555555542 334555555555555555 45555555554
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.67 Score=43.37 Aligned_cols=108 Identities=7% Similarity=0.006 Sum_probs=91.0
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 116 TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 116 ~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
++.|..|..-.+...|..=.+.+.++.+..+++..++-+ +-|..+|.---..=...|+.+.|..+|+--++........
T Consensus 429 ~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 429 NAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 577888999999999999999999999999999988764 2366777766666667799999999999988887665567
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..|-+.|.--...|.+++|..+++.+.+.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 77999999999999999999999998765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.058 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTR------SISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
.+|+.+-..|...|++++|...|++.++. .. +....+++-|-..|...|++++|++.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666677777777777777666544 21 111445677777777777777777777653
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.28 Score=42.98 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE-----LGVRPDEDTVR 234 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-----~g~~Pd~~ty~ 234 (284)
-++..++..+...|+++.+.+.+++++.. .|.+...|-.||.+|.+.|+...|+..|+.+.. .|+.|-..+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 46677888888899999999999999986 466889999999999999999999999998754 79999888776
Q ss_pred HHHHH
Q 023326 235 RIASA 239 (284)
Q Consensus 235 ~ll~a 239 (284)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.1 Score=37.27 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
...+.+..+++-|.+.++.|.+-. +-.|.+-|-.++.+ .+.+.+|.-+|++|-++. +|+.-+-|-+..++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHH
Confidence 334777788999999999998753 45677766666544 457899999999998863 348888999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHHh
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD-DKQKLVLKKYLSK 259 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~-d~a~~l~~~m~~~ 259 (284)
..|++++|..++++.....-. |..|...+|-.--..|.. +.-.+.+.+++..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999998877543 566666666666667755 3355566666544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=51.50 Aligned_cols=120 Identities=12% Similarity=0.173 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.+..++|+++|...++.. +-|.+.-|-+=-.++..|++.+|..||.+..+.... ..-+|--+-..|.-.|++-.|++
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHH
Confidence 456789999999888753 347788888888899999999999999999988763 33347788899999999999999
Q ss_pred HHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 217 VFADM-EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 217 l~~~M-~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|+.. +..+-.-+......|-.++-+.|.+.+|.+.+-.-.+.
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99975 44555567778899999999999999998877655543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.16 Score=49.80 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
..|++-...++|.+|+.+++.+..+.. -..-|.-+-+-|+..|+++.|+++|.+- + .|+-.|..|.++
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--------~--~~~dai~my~k~ 804 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--------D--LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc--------c--hhHHHHHHHhcc
Confidence 556666778899999999998887643 2345788888999999999999998752 1 167788999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
|++++|.++-.+. .|-......|-+-..-+-+.|.+.+|++++
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 9999999976653 344444445554444455555555555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.2 Score=45.36 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH------------------H
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESL------------------W 182 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l------------------~ 182 (284)
.+...+..++..|...|++++|.++.+.-.+. .-.+....|..+ .+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 34555667777788999999999998865543 122233333333 34555555554444 2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 183 NMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 183 ~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+. +.+...+-.+-.+|-+.|+.++|..+++++.+.. .-|....|.+-..|+.. ++++|.+++.+....
T Consensus 107 ~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 107 DKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 222221 1133456678888888899999999999998876 33777888888888888 999999988877655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.86 Score=45.56 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 125 IAAAKALRILR--KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 125 ~~y~~~i~~~~--~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
..|..+++++. +.|+.++|..+++.....+.. |..|.-++-..|-..+..++|..+|+...+.+ | +..--..+.
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P-~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--P-SEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--C-cHHHHHHHH
Confidence 35555565543 456666666666665544433 56666666666666666666666666666543 3 344455566
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.+|.|.+++.+..++--+|-. .+.-+.+.|.++++-+.
T Consensus 118 mayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 666666655554444333322 12225556666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.9 Score=39.10 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=69.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCCHHHHHHHHHHHHhC
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHT----QTR-SISKRLFSRMISLYDHH 208 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~-~~~~~tyn~lI~~~~~~ 208 (284)
.+.+.++.|.+.|.+-. ++.| |...++-+=-..-+.+.+.+|..+|..-+.. +-. +.-..+++-|-.+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 34455556665555443 3333 3344444433344455666666666554311 000 00123456677778888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+++++|+..|++-... ..-|..||.++-..|...|++|.|...|.+-.
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 8888888888775544 23377788888888888888888877776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.16 Score=34.38 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
|.+.+++++|.++++.++.. .|.+...|...-..|.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445555555555555443 23344444444455555555555555555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.42 Score=45.63 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH--HHHHH--hCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM--ISLYD--HHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l--I~~~~--~~G 209 (284)
+.++|++++|.+..+.++..+ +-|...+..=+-++.+.+.+++|..+.+. +. ...+++.. =.+|| +.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~---~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK----NG---ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cc---hhhhcchhhHHHHHHHHHcc
Confidence 556666777777777666554 22233344444445566666666643321 11 11112222 44444 456
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.|+|++.++ |..++.. +...=--.|-+.|++|+|..++..+.+.
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6777766665 3333332 3332233455667777777777666433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.3 Score=32.99 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~ 190 (284)
..|.+.+++++|+++++.+.+.+- -+...+...-..+.+.|++++|.+.++...+..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 468999999999999999998732 2556666677778999999999999999997643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.99 Score=42.11 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM----GTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
...+...++.+=.+|.+.|++++|+..|++-++. .||. .+|..+-.+|.+.|++++|.+.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3346777788888899999999999999987765 4553 56899999999999999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.39 E-value=3.1 Score=40.40 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=62.4
Q ss_pred CCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH-hcCCCcccc
Q 023326 192 SISKRL--FSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS-KWKYIHFKG 267 (284)
Q Consensus 192 ~~~~~t--yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~-~~~~~~~~g 267 (284)
||.... +--++..|-+.|+++.|+++++.-. +-.|+.+ -|.+=-+.+.+.|.++.|...+++-.+ .-..+.|||
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 444444 4567899999999999999999754 4478776 555556889999999999999998873 345688888
Q ss_pred cee--eeeccc
Q 023326 268 ERV--RVRRDA 276 (284)
Q Consensus 268 ~~~--~~~~~~ 276 (284)
+++ -+++++
T Consensus 444 KcAKYmLrAn~ 454 (700)
T KOG1156|consen 444 KCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHccc
Confidence 887 344443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.7 Score=44.50 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CCCH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG--Q---GATMGTYDTLLLAFDKDHRADEAESLWNMILHT----QTR--SISK 195 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~---~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~--~~~~ 195 (284)
.+.+-..+...|++++|...+++..... . ..-..+++.+-..+...|++++|...+++..+. +.. +...
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3444455778999999999999877431 1 111345556666778899999999998776542 211 1123
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELG--VRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+..+-..+...|++++|...+++..... ..+. ...+..+...+...|+.+.|.+.+++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556667777899999999998865431 1222 33455556678899999999999988754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.69 Score=43.98 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGA----TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p----~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
|+..++=+=....+.+.+.+|...|+.-+.. .+.+ -.-+++.|=++|-+.+.+++|...++.-+.. .|.+..
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~ 490 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDAS 490 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchh
Confidence 3444443333356678899999999876521 1111 2346788888899999999999999998876 455999
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
+|.++--.|...|+++.|.+-|.+ ..++.||-.+-..+|.-+..
T Consensus 491 ~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999997 56789999988888886543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.53 Score=44.76 Aligned_cols=113 Identities=10% Similarity=0.066 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 140 WLRVIQVAKWMLS-KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 140 ~~~A~~l~~~M~~-~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
+.+..++|-++.. .+-.+|...++.|=-.|--.|.+++|...|+..+.. +|.|...||-|=..++...+.++|++.|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 4566677766654 454455556666666688899999999999999874 6879999999999999999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 219 ADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 219 ~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.+-.+. +|+.+ .-..|--.|...|.+++|.+.|=..
T Consensus 488 ~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 488 NRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 987654 77655 4444555788999999998877543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.33 Score=32.43 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHhHH
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVG-QDDKQKLVLKKYLS 258 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~ 258 (284)
+..+|..+-..+.+.|++++|+..|++..+. .| +...|..+-.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567899999999999999999999998776 35 5557888888899999 79999999987654
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.23 E-value=3.8 Score=36.44 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-
Q 023326 139 QWLRVIQVAKWMLSKG---QGATMGTYDTLLLAFDKDHR----ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM- 210 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g---~~p~~~ty~~Ll~~~~~~g~----~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~- 210 (284)
...+|..+|+.|++.- -.++-+++.+||.. ..++ .+.++.+|+.|.+.|....|..-+-+-|-+++..-.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 4668999999999874 34677889999877 3333 466888899999988875455444444444444322
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCC---HHHHHHHHHHhHHhcCCC
Q 023326 211 --PNKIIEVFADMEELGVRPDEDTVRRIAS-AFQRVGQ---DDKQKLVLKKYLSKWKYI 263 (284)
Q Consensus 211 --~~~A~~l~~~M~~~g~~Pd~~ty~~ll~-a~~~~G~---~d~a~~l~~~m~~~~~~~ 263 (284)
..++.++++.+++.|+++....|.++-- ++...+. ++...++.+.+.++-+++
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 3478899999999999998888776643 3333333 444555555665554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.7 Score=38.75 Aligned_cols=127 Identities=8% Similarity=-0.041 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
|-.+-..|.+..+-++-+..|++-.+.. -.||++..-.=| +--.+++++|..=|++-++. .|.+...|--+-.+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm--~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM--RFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCAL 438 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH--HHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHH
Confidence 7777778999999999999999877654 345554433333 33346788888888888764 566788888888888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
-|.+.+++++..|++.+.. +.--...|+..-..+...+++|+|.+.|+.-.+
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 8999999999999998765 222344777788889999999999999987663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.17 E-value=4.2 Score=38.34 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
..|++..|.++|+.-.+. .|+...|++.|+-=.+-+.++.|..+++..+-. .| ++.+|--...---++|++.-|.
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP-~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HP-KVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cc-cHHHHHHHHHHHHhcCcHHHHH
Confidence 356777777777654433 677777777777777777777777777777643 34 7777777777777777777777
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHhHHhc
Q 023326 216 EVFADMEE-LGVRPDEDTVRRIASAFQ----RVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 216 ~l~~~M~~-~g~~Pd~~ty~~ll~a~~----~~G~~d~a~~l~~~m~~~~ 260 (284)
.+|..-.+ .| |...-..|+.+++ ++..++.|.-+|....+++
T Consensus 228 ~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 228 SVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77765332 22 2333333444443 4455566666665555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.1 Score=39.43 Aligned_cols=126 Identities=13% Similarity=0.263 Sum_probs=71.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK----GQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISL 204 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~----g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~ 204 (284)
|...|++++|.+.|...... +-... ...|......| +..++++|.+.+++..+.+.... ....+.-+-..
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ 123 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEI 123 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 66666666666666554321 11111 23344433333 33366666666666554433211 12345555566
Q ss_pred HHhC-CChhHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 205 YDHH-DMPNKIIEVFADME----ELGVRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 205 ~~~~-G~~~~A~~l~~~M~----~~g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|-.. |++++|++.|++-. ..| .+. ...+.-+...+.+.|++++|.++|++......
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 6666 88999999888743 344 222 23567777889999999999999999877543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.91 Score=41.05 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=84.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHhCCC
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI-SLYDHHDM 210 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI-~~~~~~G~ 210 (284)
+.+.-..++++.+-.++....-=..-|.+-|| +-.+.+..|...+|+++|-......++ |..+|-+|+ ..|.++|+
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik--n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK--NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh--hhHHHHHHHHHHHHhcCC
Confidence 33444556777777777666544444555554 567788889999999999877766655 677776555 78899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+-|.+++-+|...+ +.++.--|| .-|-+++++=-|-+.|+++..
T Consensus 444 P~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred chHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999998887775332 445555555 568888888888888877653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.8 Score=38.88 Aligned_cols=133 Identities=8% Similarity=-0.000 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc--CCCCCCHH
Q 023326 124 LIAAAKALRILRKR----GQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRADEAESLWNMILHT--QTRSISKR 196 (284)
Q Consensus 124 ~~~y~~~i~~~~~~----g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~--~~~~~~~~ 196 (284)
...|+.++..++.. ...+.|.++++++.+. -||...|.-.-.- +...|++++|.+.|+..... ..+.....
T Consensus 229 LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 229 LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 44566666655554 5688999999999976 7887766544433 45679999999999976532 11222233
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHhHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA-FQRVGQD-------DKQKLVLKKYLSK 259 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a-~~~~G~~-------d~a~~l~~~m~~~ 259 (284)
.|--+.-.+.-.+++++|.+.|..+.+.. .-...+|.-+.-+ +...|+. ++|.++|.+...-
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 34445555788899999999999998753 1123344444333 3466777 8888888876643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.8 Score=33.49 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR 174 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~ 174 (284)
.....+|..+.+.+........++.+...|. .+...+|.+|..|++...
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~ 56 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP 56 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH
Confidence 3445778888888999999999999988873 677789999999988643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.61 Score=40.96 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=88.4
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
....+.. +.+++++++|+..|.+-++.. +-|.+-|..--.+|++.|.++.|.+=.+.-+.. .|.-
T Consensus 84 LK~eGN~------------~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~y 148 (304)
T KOG0553|consen 84 LKNEGNK------------LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHY 148 (304)
T ss_pred HHHHHHH------------HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHH
Confidence 4567777 999999999999999988752 337899999999999999999998877766653 4545
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
..+|..|=.+|...|++++|++.|++- ..+.|+-.+|..=|+.-
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKa--LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKA--LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhh--hccCCCcHHHHHHHHHH
Confidence 678999999999999999999998874 45688887887666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.5 Score=34.13 Aligned_cols=140 Identities=8% Similarity=-0.074 Sum_probs=104.1
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 116 TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 116 ~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
++....|++..--.+-.++...|+..||...|++-...-+.-|....-.+-++.-..+++..|...++.+.+..-.-.+.
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 45566788888888889999999999999999998876677788888888888888999999999999998765221111
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+--.+-..|...|..++|..-|+...+.--.|....|-+. -+.+.|+.+++..-+..+.
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e--~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE--MLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH--HHHHhcchhHHHHHHHHHH
Confidence 22345667889999999999999998776555555544333 3456676666655444433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.4 Score=38.83 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 110 GALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 110 ~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
+.+..|+..+ ..| |.+-|..=-.+|.+.|+.+.|++=.+.-+.- .|. ..+|..|=.+|...|++++|.+.|..-+
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 4455565543 333 4555555566788888888887755544432 333 3578888888888888888888877766
Q ss_pred HcCCCCCCHH
Q 023326 187 HTQTRSISKR 196 (284)
Q Consensus 187 ~~~~~~~~~~ 196 (284)
+ +.|.+..
T Consensus 177 e--ldP~Ne~ 184 (304)
T KOG0553|consen 177 E--LDPDNES 184 (304)
T ss_pred c--cCCCcHH
Confidence 5 3554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=4.5 Score=34.99 Aligned_cols=134 Identities=10% Similarity=0.116 Sum_probs=103.0
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 120 TEFPLIA-AAKALRILRKRGQWLRVIQVAKWMLSKGQGATM---GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 120 ~~p~~~~-y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+++..+ |..++=+....|+.+.|..+++.+..+- |+. .-+-.++ +-..|..++|.++++.+++.+ |.|.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd--pt~~ 120 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD--PTDT 120 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC--cchh
Confidence 4555544 3345555667789999999999988763 443 2222222 344689999999999999886 6788
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
++|--=|...-..|+--+|++-+.+-.+. +.-|...|.-+-.-|...|++++|.-.+++|.-..
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88987777777788888999888876654 66799999999999999999999999999987543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.62 Score=43.46 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK---RLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+...++.+-.+|.+.|++++|...|++-++. .|.+. .+|..+-.+|.+.|++++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999998875 35444 46999999999999999999999998876
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.5 Score=36.71 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCH-HHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKIIEVFADMEEL-GVRPDE-DTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~-g~~Pd~-~ty~~ll 237 (284)
-|+.-++.+ ++|++..|..-|...++.|-.. .....+=-|-..+...|++++|-.+|..+... +-.|-. ..+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 588888766 6678999999999999886431 11222444778888999999999999988654 333433 4666677
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
....+.|+.|+|..+|++..++|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 778899999999999999998875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.71 Score=35.21 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=65.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HH-HHHHHHHHHH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---ED-TVRRIASAFQ 241 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~~-ty~~ll~a~~ 241 (284)
.++-..|+.++|..+|++-...|...++ ...+-.+-+.|-..|++++|+.+|++....- |+ .. ....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3456789999999999999998876422 3456667788999999999999999877652 44 22 1222334778
Q ss_pred HcCCHHHHHHHHHHh
Q 023326 242 RVGQDDKQKLVLKKY 256 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m 256 (284)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 999999998877543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=2.4 Score=37.60 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=86.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CCH----
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS------------ISK---- 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~------------~~~---- 195 (284)
...+.|+.++|++-|+.-.+- |+.|- ..||.-+.-| +.|+.+.|.++..++++.|++. +|+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 367889999999999886654 66664 5688777665 5578889999999998888761 122
Q ss_pred -----------HHHHHHHHHHHhCCChhHHHHHHHHHHH---------------------------------CCCCC-CH
Q 023326 196 -----------RLFSRMISLYDHHDMPNKIIEVFADMEE---------------------------------LGVRP-DE 230 (284)
Q Consensus 196 -----------~tyn~lI~~~~~~G~~~~A~~l~~~M~~---------------------------------~g~~P-d~ 230 (284)
..||.=...+-+.|+++-|.+.+.+|-- .|+.| -.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCCh
Confidence 1244445556677888888887776611 13344 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 231 DTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 231 ~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
.||..++--||+..-++-|-.++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 5899999999999999988887765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.12 E-value=2 Score=40.14 Aligned_cols=150 Identities=9% Similarity=0.036 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
..|....+..-++.|..+|-+..+.| +.++++.|++.|.-++. |+...|..+|+.=... .|++..--+-.+.-+.+
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHH
Confidence 34555555666888999999999888 77889999999987765 6777788888754433 23232223566667778
Q ss_pred CCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC---ccccceeeeecccccccCC
Q 023326 208 HDMPNKIIEVFADMEELGVRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYI---HFKGERVRVRRDAWYESGS 282 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~---~~~g~~~~~~~~~~~~~~~ 282 (284)
.|+-+.|..+|+.-.+. ++-+ ...|..+|+-=...|++..+..+=++|.+.+.-. .+..-|-.+++++--|+-+
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~da~~~~le 557 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKADAILPPLE 557 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhccccCCCCC
Confidence 88888999998854322 2222 4578888888888999888887777777665533 2333344466666555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.05 E-value=3.4 Score=42.40 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------------
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLW------------ 182 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~------------ 182 (284)
..+.+..-|...|.-+|....+.|.|++-.+.+..-++..-.|.+. +.||-+|++.+++.+.+++.
T Consensus 1124 ieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1124 IESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 3445666788899999999999999999999998888887778776 47999999999998877762
Q ss_pred HHHHHcCCCC------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 183 NMILHTQTRS------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 183 ~~m~~~~~~~------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
++..+.+.-. .++.-|.-|-.-+.+.|+++.|.+.-++- -++.||.-+-.||...+.+
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 2222222210 14555778888888889998888765542 1444555555555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.89 E-value=3.6 Score=32.33 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
..-|+.... ..+.|++++|.+.|+.+...= ..| ....---|+.+|-+.+++++|...++..++.+-..+++- |-..
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y 88 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYY 88 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHH
Confidence 334444444 345677888888888887651 111 235566778888888888888888888887765433433 7777
Q ss_pred HHHHHhCCChh
Q 023326 202 ISLYDHHDMPN 212 (284)
Q Consensus 202 I~~~~~~G~~~ 212 (284)
+.|++.....+
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77776655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.76 E-value=5.5 Score=38.75 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.++-.+...|-+.|+++.|....+.-... .|+.+ -|.+=-..+..+|++++|..++++-.+.+.. |+..=.--..
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a--DR~INsKcAK 447 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA--DRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch--hHHHHHHHHH
Confidence 34447778899999999999999987744 66653 4544457788999999999999999887543 6553225556
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH--------HH--HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRR--------IA--SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~--------ll--~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-..++.++++|.++....-..|. +...+-. += .+|.+.|.+-.|.+=|..+.+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 67789999999999988877775 3332221 11 367788888888877777665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=11 Score=38.66 Aligned_cols=160 Identities=10% Similarity=-0.023 Sum_probs=83.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETE---F-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGAT--MGTYDTLLLAFD 170 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~---p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~--~~ty~~Ll~~~~ 170 (284)
.|..++|+..++..-....-... + ....+..+-..+...|++++|...+++.... ...+. ...+..+-..+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 46666666555443332211111 1 1223333444566679999999998886543 11122 334444555677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHH-----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTRSISKRLF-----SRMISLYDHHDMPNKIIEVFADMEELGVRPDE---DTVRRIASAFQR 242 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~~~ty-----n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~---~ty~~ll~a~~~ 242 (284)
..|+.++|.+.+.+.............+ ...+..+...|+.+.|.+++.+.......... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999988887775432111010101 11224445567777777776654332111111 113344556667
Q ss_pred cCCHHHHHHHHHHhHH
Q 023326 243 VGQDDKQKLVLKKYLS 258 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~ 258 (284)
.|+.++|..++++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=92.47 E-value=7.8 Score=34.83 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=69.3
Q ss_pred HHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC---C
Q 023326 135 RKRGQ--WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH---D 209 (284)
Q Consensus 135 ~~~g~--~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~---G 209 (284)
.+.|. .++++.+++.|.+.. .-|...|+-.--.+.+.|+++++.+.++++++.+.. |...|+..--.+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHHHHHHhccccc
Confidence 34454 367888998888664 237889998888899999999999999999987654 777788776666555 2
Q ss_pred Chh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 210 MPN----KIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 210 ~~~----~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
..+ ++++...++ -...|+-.+--.-+.+....
T Consensus 194 ~~~~~~e~el~y~~~a--I~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 194 GLEAMRDSELKYTIDA--ILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccccHHHHHHHHHHH--HHhCCCCcCHHHHHHHHHhc
Confidence 222 333333222 22456655555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=4.7 Score=41.22 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
.+-.+-.+|-+.|+.++|.++++++++.. .-|....|.+-..|+.. ++++|.+++..-+...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 44456666777899999999999999876 44778888888888888 8888888866555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.39 E-value=2 Score=33.15 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
...+|..+.+.+.......+++.++..+. .+...+|.+|..|++.+ .++.++.++. ..+.+....+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 35678888888899999999999998874 37778999999999874 4455555552 123334444555555
Q ss_pred HcCCHHHHHHHHHHh
Q 023326 242 RVGQDDKQKLVLKKY 256 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m 256 (284)
+.+.++++..++.++
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 555555555555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.2 Score=39.93 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAK--------WMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----- 191 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~--------~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----- 191 (284)
+..-..+......|+++.|++++. ...+.+..|-++. +++..+.+.++-+.|-.++++-+.-...
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344466777888999999999999 6777777776654 5666677877777788887776543322
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.-..+|--+...--++|+.++|..+++++... ..+|+.+...++.+|++. +.++|..+-..+.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 112234555666667889999999999999875 357999999999999988 5677877765554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=7.6 Score=33.92 Aligned_cols=117 Identities=11% Similarity=-0.037 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-----FDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-----~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
+-+..-...+...-.+.|+.+.|...|++..+..-+.|..+++.++.- |.-++++..|...+++....+-. |.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~--~~ 286 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR--NA 286 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC--ch
Confidence 345556667777788899999999999988877666676676666532 44467888888889888876533 44
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
..-|.=--.....|+..+|++.++.|.+. .|...+-++++.-++
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 43333222333458999999999999876 566666665554433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.08 E-value=2 Score=40.18 Aligned_cols=94 Identities=10% Similarity=0.138 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCCHHHH-HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD-MEELGVRPDEDTV-RRI 236 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~-M~~~g~~Pd~~ty-~~l 236 (284)
...|+.+|+..-+..-++.|+.+|-++.+.+....++.+|+++|.-||. |+..-|..+|+- |+. -||.-.| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 5788999999999999999999999999999776699999999999987 888889998874 332 2444433 445
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m 256 (284)
+.-+...++-+.|..+|+.-
T Consensus 473 l~fLi~inde~naraLFets 492 (660)
T COG5107 473 LLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHh
Confidence 55666777777788888733
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.52 Score=41.28 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPLIAAAKALRILRKR----------------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~----------------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~ 170 (284)
-+|.++..|...+.+-|+.+|+.+|..+=+- .+-+=++.++++|...|+.||..+--.||++|+
T Consensus 90 FIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 90 FIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFG 169 (406)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhc
Confidence 3456666666677777777777766665442 223458899999999999999999999999999
Q ss_pred hcCCH
Q 023326 171 KDHRA 175 (284)
Q Consensus 171 ~~g~~ 175 (284)
+.+-.
T Consensus 170 r~~~p 174 (406)
T KOG3941|consen 170 RWNFP 174 (406)
T ss_pred ccccc
Confidence 87753
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.6 Score=44.64 Aligned_cols=62 Identities=6% Similarity=0.072 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
+++.+|...|.-+|....+.|.+|+-+..+.--+...-.|...| .||.||++.+++.+.+++
T Consensus 1127 yikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1127 YIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH
Confidence 33444556666666666666666666665554444445555443 556666666666555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.82 E-value=3.8 Score=36.85 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
-+.+.-|.-|...|+...|.++..+. -.| +...|-..|.+|+..|++++-.+.... +-..+-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~-dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVP-DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCc-HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 35556677777889988888876654 244 999999999999999999988875432 2234889999999
Q ss_pred HHHcCCHHHHHHHHHHhH
Q 023326 240 FQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~ 257 (284)
|.+.|+.++|..+...+.
T Consensus 247 ~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHCCCHHHHHHHHHhCC
Confidence 999999999999887754
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.1 Score=34.42 Aligned_cols=87 Identities=9% Similarity=-0.045 Sum_probs=63.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+-+.|++++|..+|.-+.-.+.- |..-+..|-..|-..+.+++|..+|......... |...+=.+-..|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCccchHHHHHHHhCCHHH
Confidence 77899999999999988775421 3444555555556678999999998877665543 44445556678888999999
Q ss_pred HHHHHHHHHH
Q 023326 214 IIEVFADMEE 223 (284)
Q Consensus 214 A~~l~~~M~~ 223 (284)
|.+.|..-.+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998887665
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.072 Score=41.55 Aligned_cols=87 Identities=13% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
+|..+-+.+..+....+++.++..+.. .+....|.++..|++.++.++.++.++. .+.+-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 445555566666666667777655543 2566677777777777776777766662 12244456666677777
Q ss_pred CHHHHHHHHHHhHHh
Q 023326 245 QDDKQKLVLKKYLSK 259 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~ 259 (284)
.++++..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 777777776665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.86 E-value=4.6 Score=39.37 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG------QGATMGTYDTLLLAFDKDHRADE---AESLWNMILHTQTRSISKRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g------~~p~~~ty~~Ll~~~~~~g~~~~---A~~l~~~m~~~~~~~~~~~t 197 (284)
-+-.|+.+++.+++++|-+.+...+... -+-|...|+-+-+..++.-+.-. ...++..++..+-.. --..
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq-~g~L 250 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ-LGFL 250 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH-HHHH
Confidence 4456777788888888888887776431 23455666666666665443322 223344433332111 2356
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
|++|-.-|.+.|++|+|-++|++-... ...+.-|+.+.++|+..
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 999999999999999999999985443 33556677777777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.54 E-value=5.9 Score=34.42 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG----QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~ 200 (284)
.|+..+.. .+.|++.+|.+.|..-++.. +.||..-| |-..+...|++++|..+|..+.+.+-..+ .....--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 68888875 46777999999999998752 56777666 67889999999999999999998765522 2344555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 023326 201 MISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
|-....+.|+.|+|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667778899999999999998765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.48 E-value=7 Score=30.70 Aligned_cols=101 Identities=9% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDEDTVRRI 236 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~~ty~~l 236 (284)
...|..-..++ +.|++++|.+.|+.+...+-. +.....---|+.+|-+.|++++|+..+++..+..- .|+ +-|...
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34455555444 567888888888888766533 23445567778888888888888888887766653 233 445555
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHhHHhcC
Q 023326 237 ASAFQRVGQ-----------------DDKQKLVLKKYLSKWK 261 (284)
Q Consensus 237 l~a~~~~G~-----------------~d~a~~l~~~m~~~~~ 261 (284)
+.|++.... ...|..-|++++++|.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 555443332 4567777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=90.31 E-value=9 Score=31.76 Aligned_cols=127 Identities=12% Similarity=0.131 Sum_probs=75.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG-QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH---- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g-~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~---- 207 (284)
+.+.|++++|...|+.+...- ..| -....-.+..++-+.|+++.|...++.+++.+-..+.. -+-..+.|.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhC
Confidence 678899999999999998752 111 12445567788889999999999999998876553222 24333333332
Q ss_pred ---------CCChhHHHHHHHHHHHCC----CCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 208 ---------HDMPNKIIEVFADMEELG----VRPDEDTVR------------RIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 208 ---------~G~~~~A~~l~~~M~~~g----~~Pd~~ty~------------~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+...+|+..|+++...- ..++..... .+..-|.+.|...-|..-++.+.++|.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 223346666676665431 122222221 123356677888888888888887765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.9 Score=42.63 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
..|..|.++|+|++|.++-.+-. |-......|-+--.-+-+.|++.+|++++-..- .| .-.|..|-++
T Consensus 796 dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p------~~aiqmydk~ 863 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP------DKAIQMYDKH 863 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc------hHHHHHHHhh
Confidence 44444555555555555443321 222233344433334444455555554442211 12 3346777777
Q ss_pred CChhHHHHHHHH
Q 023326 209 DMPNKIIEVFAD 220 (284)
Q Consensus 209 G~~~~A~~l~~~ 220 (284)
|..|+++.+..+
T Consensus 864 ~~~ddmirlv~k 875 (1636)
T KOG3616|consen 864 GLDDDMIRLVEK 875 (1636)
T ss_pred CcchHHHHHHHH
Confidence 777777777664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=4.5 Score=32.56 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
..|++++|+.+|.-+.-.+. .+..-|..|-..|-..+++++|++.|...-..+. =|...+--.-..|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 45666666666665554332 2444455555555555666666666655433332 12222333334455556666666
Q ss_pred HHHHHhHHh
Q 023326 251 LVLKKYLSK 259 (284)
Q Consensus 251 ~l~~~m~~~ 259 (284)
..|+...++
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 666555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.03 E-value=3.8 Score=36.05 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAF---DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~---~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
|.+.|+.+.|..-|..-.+. |-.|+ .+..+-.++ +...+-.++..+|++++.. .|.|+.+-..|-.++...|
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g 241 (287)
T COG4235 166 YMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQG 241 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcc
Confidence 88888888888888876543 43333 333333332 2233456688888888875 3557777777778888888
Q ss_pred ChhHHHHHHHHHHHC
Q 023326 210 MPNKIIEVFADMEEL 224 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~ 224 (284)
++.+|...|+.|.+.
T Consensus 242 ~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 242 DYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHhc
Confidence 888888888888766
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.99 E-value=4.4 Score=38.72 Aligned_cols=115 Identities=10% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 141 LRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 141 ~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
+.....+++++.. ...|+ .+|..+|+.--+..-++.|+.+|.+..+.+..+-.+.+++++|.-||. +|.+-|..+|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3344444444433 23333 467777777778888888888888888887776678888888888886 78888888887
Q ss_pred H-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 220 D-MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 220 ~-M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
- |+..|-.| .--...++-+.+.++-..+..+|++....
T Consensus 426 LGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4 44444333 23345667777888888888888888776
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.63 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 023326 198 FSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666777777777776666
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.46 E-value=6.9 Score=39.44 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
-+|+...|-.|+.++|-.+-++- -|....-.|-+.|-..|++.+|..+|-+.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444445555555555555442 255666677788888888888888876654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.34 E-value=15 Score=33.86 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=90.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-----GQGA---------TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-----g~~p---------~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
|.+.|++..|...|++-... +..+ -..+++.|...|.|.+++..|.+..+..+..+ |.|+-..=
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy 295 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY 295 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence 89999999999998874431 1221 24678888889999999999999999888764 44665444
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHHhcC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV--GQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~--G~~d~a~~l~~~m~~~~~ 261 (284)
-==.+|...|+++.|...|+++.+. .|+-..-..=|..|.+. ...++..++|..|..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4456788889999999999998765 77666665555555432 234456788888876644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.31 E-value=13 Score=34.53 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMIL-------------------------- 186 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~-------------------------- 186 (284)
+.+.|+.++|.--|+.-... .| +...|--|+..|...|++.+|.-.-+.-.
T Consensus 344 L~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 55566666666666654432 22 45566666666666666666554422111
Q ss_pred ------HcCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 187 ------HTQT--RSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 187 ------~~~~--~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.+. .|.=.-.-+.+-..+...|..++++.+++.-. -..||..-.+.|-..+.....+++++..|....
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111 12112224677778888899999999998754 358999999999999999999999888876554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.5 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=49.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
+-.=+.++++.++..=++-|+-||.+|++.||+.+.+.+.+.+|.++...|+.....
T Consensus 111 llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~ 167 (418)
T KOG4570|consen 111 LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEAF 167 (418)
T ss_pred HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 334467799999999899999999999999999999999999999999888876544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=15 Score=31.49 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=98.1
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh--
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPL-IA---AAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDK-- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~-~~---y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~-- 171 (284)
.|..++|...|+.+.. ..|+. .. .-.+..+|.+.+++++|...|++..+.- -.|++ -|.-.+.|.+.
T Consensus 45 ~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 45 DGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred CCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 4555666666666543 11211 11 1234566889999999999999988762 33433 34444444431
Q ss_pred ---------------cCC---HHHHHHHHHHHHHcCCCCC---CHHH------------HHHHHHHHHhCCChhHHHHHH
Q 023326 172 ---------------DHR---ADEAESLWNMILHTQTRSI---SKRL------------FSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 172 ---------------~g~---~~~A~~l~~~m~~~~~~~~---~~~t------------yn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+ ..+|..-|+.+++.+-... +... --.+..-|-+.|.+.-|+.=|
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 012 3456678888888753310 1100 123445588999999999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 219 ADMEELG--VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 219 ~~M~~~g--~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
+.+.+.= -.........++.+|...|..++|..+...+..
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9998752 334555777888999999999999998876654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.19 E-value=4.6 Score=32.94 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC---CCHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS--KRLFSRMISLYDHHDMPNKIIEVFADMEELGVR---PDEDTVR 234 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~--~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~---Pd~~ty~ 234 (284)
..+..+-.-|++.|+++.|.+.+.++.+....+ . ...+-.+|....-.|++..+...+.+.+..--. ++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP-GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 578888899999999999999999987754332 2 234678888888899999999988876654433 3333333
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHhHHhc
Q 023326 235 RIASAF--QRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 235 ~ll~a~--~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+..|+ ...|++..|-++|-+....+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344443 46678888888886665444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=88.12 E-value=17 Score=34.49 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSK-GQGAT-----MGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~-----~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+..+++..+=.|+=+.+++++.+-.+. |+.-. .-+|+.++..++. ...++.|.++++.+.+.+ | +-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P-~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P-NS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C-Cc
Confidence 4457777888889999999999875543 23321 3566777766654 457889999999999875 4 54
Q ss_pred HHHHHHH-HHHHhCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMI-SLYDHHDMPNKIIEVFADMEELG---VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI-~~~~~~G~~~~A~~l~~~M~~~g---~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...- ..+...|++++|++.|++..... -+.....|--+.-.+.-.+++++|.+.|.++.+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4454444 45566799999999999754321 1234455666666788899999999999999854
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.11 E-value=8.7 Score=34.99 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGT-YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEV 217 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l 217 (284)
.+.-|.+.|+..-+.+..-|.+. --++-+.+--..++++....++....- ...+|..-|| +-.+++..|.+.+|+++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HHHHHHHhcChHHHHHH
Confidence 45667777776666654433321 112223333445788888888876654 4444666666 56899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHh
Q 023326 218 FADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 218 ~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~m 256 (284)
|-......++ |.++|-.++ +.|.+.+..+.|..++-.+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9876544444 777887776 6778999999998887554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=5.2 Score=35.74 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+.++++.++..=..-|+-||.+|+..||+.+.+.|+..+|..+.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44455555554445555555555555555555555555544444333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.01 E-value=2.6 Score=39.88 Aligned_cols=103 Identities=12% Similarity=0.007 Sum_probs=80.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+.+..|+++.|+.+|.+-+... ++|++-|..-..+|++.|++++|.+=-.+-++. .|.=.--|+-.=.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 3567899999999999877554 349999999999999999999988776666553 4522345888888999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAF 240 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~ 240 (284)
+|+.-|.+=.+. .| |..-++.+..++
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 999999874443 33 566777777776
|
|
| >PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
Probab=88.00 E-value=7.9 Score=28.82 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHHHcCC
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL--G--VRPD-EDTVRRIASAFQRVGQ 245 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~--g--~~Pd-~~ty~~ll~a~~~~G~ 245 (284)
|..|+.-|-..|+.++|++++.+..+. + ..|. .....++|..+.+.|.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 899999999999999999999998772 1 1111 1123345777777765
|
Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.43 E-value=21 Score=35.12 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT------QTRSISKRLFSRM 201 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~l 201 (284)
...|......|..+-++.++++-++. .|. .-+--|.-+++.+++++|.+.+...+.. ..+ .+...|+-+
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gk-Sn~qlw~el 216 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGK-SNHQLWLEL 216 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhccc-chhhHHHHH
Confidence 35556666778888888888887764 333 3566778889999999999888776533 233 377778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCC--CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELG--VRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g--~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-...+++-+.-.-+.+ ++....| .-+|.. -|.+|.+.|.+.|.+|+|..++++-...
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8887777554433332 2233334 346765 7899999999999999999999876543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.30 E-value=14 Score=29.86 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=93.1
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 109 YGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 109 f~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
.+-+..++.....|+...|..+|..+.+.|++.. +..+.+.++-+|.......+-.+.. ....+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3445557778888999999999999999998554 4667778887877666655543333 344556665555433
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
=.. .+..++..+-..|++-+|+.+.+..... |.....-++.|-...++...-..++.-..+
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2788889999999999999998875322 233346678888888877766666665554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.17 E-value=13 Score=30.35 Aligned_cols=89 Identities=7% Similarity=-0.119 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH------HHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL------FSRMIS 203 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t------yn~lI~ 203 (284)
..|++.|+.++|++.|.++.+....+.. ..+-.+|....-.+++..+....++....--...|... |..|.
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~- 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA- 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-
Confidence 3399999999999999999987655543 56778888888899999998887666543333223322 23222
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~ 222 (284)
+...|++.+|-++|-+..
T Consensus 123 -~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 123 -NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred -HHHhchHHHHHHHHHccC
Confidence 233589999999888764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=86.91 E-value=27 Score=32.89 Aligned_cols=42 Identities=7% Similarity=-0.126 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELG----VRPDEDTVRRIASAF 240 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g----~~Pd~~ty~~ll~a~ 240 (284)
+..+..+...|++.++..++++|...= ..-|..+|+.++-.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 455555555666666666655554332 224555555533333
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=86.87 E-value=38 Score=34.42 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 023326 94 LVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH 173 (284)
Q Consensus 94 l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g 173 (284)
+.-...|..++|....+.+.. ... -|..|...+-..|...|+.++|..+|++..+. -|+..-...+..+|.+.+
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~---~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYG---LKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHhcCchhHHHHHhhhcc---CCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 333346777777766665542 222 27888889999999999999999999998755 678888888999999998
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
++.+-.+.--+|-+. .|.+...|-++|+.+.+
T Consensus 125 ~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 887755554444332 23344444444444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=86.62 E-value=8.4 Score=31.94 Aligned_cols=92 Identities=9% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH----
Q 023326 169 FDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRPDEDTVRRIASAFQR---- 242 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~---- 242 (284)
+...|++++|...|+.+...+-. +......-.++.+|-+.|++++|...|++....- -.|.. -+...+.|.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhC
Confidence 45779999999999999987543 2234556678899999999999999999976542 23332 23333333322
Q ss_pred ---------cCCHHHHHHHHHHhHHhcC
Q 023326 243 ---------VGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 243 ---------~G~~d~a~~l~~~m~~~~~ 261 (284)
.+...+|...|+.+.++|.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 2334577888888888765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.60 E-value=22 Score=31.37 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCC-CHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD---MPNKIIEVFADMEELGVRP-DEDT 232 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G---~~~~A~~l~~~M~~~g~~P-d~~t 232 (284)
-|...|--|=..|-..|+++.|..-|..-.+. .|++...+..+-.++.... +-.++..+|+++... .| |...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 36789999999999999999999999988875 4557777777766665543 456899999998765 44 5556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|-.++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666778899999999999999999865
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.51 E-value=21 Score=30.94 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=108.7
Q ss_pred HHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhc-
Q 023326 97 IVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGATM--GTYDTLLLAFDKD- 172 (284)
Q Consensus 97 ~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~--~ty~~Ll~~~~~~- 172 (284)
...|...+|..-|+.++. ..........+--.++-++-+.++.++|+..+++.... +-.||+ +.|-..+..+-..
T Consensus 45 L~~gn~~~A~~~fe~l~~-~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDS-RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHH-cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 347888889999998873 22233334455567778888999999999999986654 566765 4454444433222
Q ss_pred ---CC---HHHHHHHHHHHHHcCCCC---CCHHH-----------H-HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 023326 173 ---HR---ADEAESLWNMILHTQTRS---ISKRL-----------F-SRMISLYDHHDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 173 ---g~---~~~A~~l~~~m~~~~~~~---~~~~t-----------y-n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
.+ ..+|..=|.++++.+-.. +|+.. + -.+-.-|.+.|.+.-|..=+++|.+. ..=...
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 22 233444566666654220 12211 2 34447789999999999999999987 222222
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 232 ---TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 232 ---ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+-.|..+|-+.|..++|.+.-.-+...+.
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 466677899999999999999888876655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.51 E-value=12 Score=32.89 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH-----TQTRSISKRLF 198 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~~~~~ty 198 (284)
+.+++.+++.+...|+.+.+...++++.... .-|...|..||.+|.+.|+...|...|+.|.+ .|+.| ...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P-~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP-APELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc-cHHHH
Confidence 4467788999999999999999999998763 23788999999999999999999999888854 56666 66666
Q ss_pred HHHHHH
Q 023326 199 SRMISL 204 (284)
Q Consensus 199 n~lI~~ 204 (284)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=7.9 Score=37.12 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH-HH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL-FS 199 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t-yn 199 (284)
+|...+..|=-.|--.|++++|...|+..++. +| |...||-|=..++...+-++|..-|++-++. +|-=+++ ||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh
Confidence 34444444445566788999999999998865 66 5679999999999999999999999998874 4422333 55
Q ss_pred HHHHHHHhCCChhHHHHHHHH---HHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFAD---MEELG------VRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~---M~~~g------~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
.-| .|...|.+++|.+.|-+ |...+ ..++...|.+|=.++.-.++.|-+.+.
T Consensus 504 lgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 554 57888999999998775 44442 233455777777777777777755444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=16 Score=35.20 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.+...|.++--.....|++++|...+++.++.. | +...|..+-..|...|+.++|.+.|++-....
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667766555556799999999999999864 5 78889999999999999999999998865543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.30 E-value=22 Score=31.75 Aligned_cols=142 Identities=7% Similarity=-0.048 Sum_probs=90.8
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCC-------
Q 023326 120 TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTL-LLAFDKDHRADEAESLWNMILHTQT------- 190 (284)
Q Consensus 120 ~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~L-l~~~~~~g~~~~A~~l~~~m~~~~~------- 190 (284)
..| +....+.+=-.|-...++.+|-..++++... .|...-|--- -..+.+.+.+..|.++...|.+..-
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 345 6666777777788899999999999998764 3443333211 1234455666666666555533100
Q ss_pred --------C-------------C--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCH
Q 023326 191 --------R-------------S--ISKRLFSRMISLYDHHDMPNKIIEVFADMEE-LGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 191 --------~-------------~--~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
. | .+..+-+-.-...-+.|+++.|++=|++-.+ .|.+| ...||.-+..| +.|+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qy 194 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQY 194 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhH
Confidence 0 0 0111222233344578999999999998665 45665 55788777766 56788
Q ss_pred HHHHHHHHHhHHhcCCCcc
Q 023326 247 DKQKLVLKKYLSKWKYIHF 265 (284)
Q Consensus 247 d~a~~l~~~m~~~~~~~~~ 265 (284)
+.|.++..++.++..-.|.
T Consensus 195 asALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHHHHHHHHHHhhhhcCC
Confidence 9999999999988654443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=85.78 E-value=24 Score=31.05 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLS--KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~--~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
..-|.+++.-++|.+++...-+--+ +.++|.+.-.++|+ |+|.+....+.++-..-.+..... +..-|.+++..|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELy 163 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELY 163 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHH
Confidence 3568889999999988775544333 35778887777777 899999999988887776654332 344488888777
Q ss_pred Hh-----CCChhHHHHHH
Q 023326 206 DH-----HDMPNKIIEVF 218 (284)
Q Consensus 206 ~~-----~G~~~~A~~l~ 218 (284)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 76 49999999887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.54 E-value=4.4 Score=24.46 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~ 187 (284)
-..|...|++++|.++++..++
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.52 E-value=25 Score=31.03 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 155 QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 155 ~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
-.++..+-.++|..+++.+++..-.++|+.....-....|...|...|..-...||..-+.++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 445555555666666666666666666665554411112445566666666666666555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.37 E-value=24 Score=30.61 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLS--KGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTR--------- 191 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~--~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~--------- 191 (284)
.-|+.....|..+|..+-|-.-++.--+ .++.|+. ..|.--+..+-..++...|.+++...-...++
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 3466777777777777766555554322 2455652 34444444444444444444443322111111
Q ss_pred ---------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 192 ---------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--VRP-DEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 192 ---------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~P-d~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
+.--..|-+.|-.|....|+..|..++++--+-+ ..+ |..+...||.+| ..|+.|++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1111235566667777889999999999865554 233 667999999999 678888887765
Q ss_pred -----HHhHHhc-----CCCcccccee
Q 023326 254 -----KKYLSKW-----KYIHFKGERV 270 (284)
Q Consensus 254 -----~~m~~~~-----~~~~~~g~~~ 270 (284)
..|-..| .+...+|+++
T Consensus 251 ~sp~~r~MDneya~l~kdl~~P~gn~~ 277 (308)
T KOG1585|consen 251 SSPTVRNMDNEYAHLNKDLSNPNGNYV 277 (308)
T ss_pred cChHhhhhhHHHHHHhhccCCCCCCcc
Confidence 3343332 4566688888
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=23 Score=30.33 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATM-GTY---DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH-- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty---~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~-- 207 (284)
+.+.|++++|.+.|+.+...- |+. ..- --|..++-+.+++++|...+++.++.+-..+++ -|-..+.|.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 567899999999999998753 332 222 345577789999999999999999887654333 36566666552
Q ss_pred C---------------CCh---hHHHHHHHHHHHC----CCCCCHHHHHHH------------HHHHHHcCCHHHHHHHH
Q 023326 208 H---------------DMP---NKIIEVFADMEEL----GVRPDEDTVRRI------------ASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 208 ~---------------G~~---~~A~~l~~~M~~~----g~~Pd~~ty~~l------------l~a~~~~G~~d~a~~l~ 253 (284)
. .|. .+|++.|++..+. ...|+....... ..-|-+.|...-|..=+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 1 122 3566666666543 122333332222 23466778887788888
Q ss_pred HHhHHhcCC
Q 023326 254 KKYLSKWKY 262 (284)
Q Consensus 254 ~~m~~~~~~ 262 (284)
+.+.++|..
T Consensus 199 ~~v~~~Yp~ 207 (243)
T PRK10866 199 EQMLRDYPD 207 (243)
T ss_pred HHHHHHCCC
Confidence 888777653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.91 E-value=2 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|..|-..|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888899999999999999999843
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=84.87 E-value=20 Score=34.14 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=57.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
.+.+.|+.+||++.|++|.+.. ..-+....-.||.++...++..++..++.+--+..........|+..+--+-..|+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 3457899999999999998753 22245577889999999999999999998864443333356778887755554444
|
The molecular function of this protein is uncertain. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.14 E-value=46 Score=32.91 Aligned_cols=117 Identities=11% Similarity=0.133 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKW------MLSKGQGA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~------M~~~g~~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
-+.+...|+.++|..+.-+ +.+-+.+. +..+.-.+-.-+-+...+..|-++|..|-++ -++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksi 779 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSL 779 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHH
Confidence 3445556666666554321 12222222 2334444434444556677777777766432 345
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH-H----------HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDED-T----------VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-t----------y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..+...|++++|+.+-+..-+ +.||++ . |.--=.||-++|+..+|.++++++...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 5666777888888877665322 244443 2 333345778888888888888777644
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.97 E-value=3.1 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+++.|-..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444444444444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.96 E-value=13 Score=33.66 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=60.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 113 DKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 113 ~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
.+....+.. |.++|.+++|+.+|..-.. +.| |.++|..--.+|.+...+..|+.=.+.-+..
T Consensus 98 SEiKE~GN~------------yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--- 160 (536)
T KOG4648|consen 98 SEIKERGNT------------YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--- 160 (536)
T ss_pred HHHHHhhhh------------hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---
Confidence 335667888 9999999999999986543 456 8999999999999999998777665554432
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
=...+.+|.|.|.-.+++....+
T Consensus 161 ------d~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 161 ------DKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhHHH
Confidence 13345666665554444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.37 E-value=2.8 Score=25.38 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677788888888888888888888765
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.82 E-value=3.4 Score=24.02 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
..+++.|-..|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578999999999999999999999864
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.66 E-value=0.33 Score=37.71 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN 183 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~ 183 (284)
+|..+.+.+..+.....++.+...+..-+....+.|+..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 566677888899999999999988766778999999999999988888777766
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.22 E-value=27 Score=30.64 Aligned_cols=128 Identities=8% Similarity=-0.013 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH-----H
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI-----S 203 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI-----~ 203 (284)
.++..+.-.|.+.-.+.++++.++..-.-+..--..|.+.--+.||++.|...|+...+...+- +..+++.++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhhhh
Confidence 3444455567788888888888886555566666677777777899999999998665443332 333343333 3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|.-..++.+|...|.+.....-+ |-.+.-.+|+- .-.|+..+|.++++.|++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl--lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL--LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 455566777888878776554322 22222223333 3467888899999998866
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.31 E-value=16 Score=37.02 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|+.|=..|-..|++++|+++-+.=..- ---.||......+-..|+.+.|.+.|++-
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 555555566666666666554431111 12234544455555556666677666653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.14 E-value=18 Score=34.14 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK-----------------GQGATMGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----------------g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
....+.++.-+-+.|..+.|+++-.+-..+ .-..+...|..|-+...+.|+++-|++.|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 444566666677777777776664432211 111345566666666666666666666555421
Q ss_pred HcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 187 HTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 187 ~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
. |..|+=.|.-.|+.++..++.+.-...|- +|.-+.++--.|++++..+++.+
T Consensus 375 -----d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 -----D-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----C-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 55555566666666655555555554442 34444555555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=80.93 E-value=40 Score=32.12 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHc
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDEDTVRRIASAFQRV 243 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~~ty~~ll~a~~~~ 243 (284)
|-..+-+.|+.++|.+.+.+|.+..-.-.+..+.-.||.++...+.+.++..++.+-.+... +--...|+..|--+...
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 33344567999999999999986542212455678899999999999999999999643221 22345788777555444
Q ss_pred CC
Q 023326 244 GQ 245 (284)
Q Consensus 244 G~ 245 (284)
|+
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
|
The molecular function of this protein is uncertain. |
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=80.91 E-value=25 Score=27.68 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=64.0
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHH
Q 023326 150 MLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTR----SISKRLFSRMISLYDHHDM-PNKIIEVFADME 222 (284)
Q Consensus 150 M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~~tyn~lI~~~~~~G~-~~~A~~l~~~M~ 222 (284)
|.+.+..++. ...|.+|.-...-+.+.-...+++.+.-.... -.+..+|++++.+..+..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444555543 45677777777777777777777666322111 1134457888888866655 445677888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
+.+.+++..-|..+|+++.+.-..|
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 8888888888888888886654333
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.86 E-value=16 Score=27.05 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||--+-+++...|-. ...+--+-+..+-..|++++|..+.+.+ +.| |...|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~p-dlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYP-DLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCc-hHHHHHHHHH--HhhccHHHHHHHH
Confidence 367888888888877643 3333334445566789999999888766 454 8888887755 4778888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 023326 219 ADMEELGVRPDEDTV 233 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty 233 (284)
.+|...| .|-..+|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 8888776 3444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=80.44 E-value=19 Score=28.15 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
......-|+.+.+.|.-|+-.++++++...+ .+ +....--+-.+|.+.|+..++.+++.+--+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~-~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EI-NPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CC-CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3456677788888888888888888887532 33 5565667778899999999998888888777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.10 E-value=66 Score=31.94 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM-GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
..|+...|..-+..-.-.+..++|++++++-++. -|+- -.|.-+=..+-+.++++.|.+-|..=... .|...-.|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence 4455555555555555555666666666554433 2332 23333444444555555555555432221 24455567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-.|...-=+.|.+-+|..+|++-+-..- -|..-|-..|..=.+.|+.++|..++.+...++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777778888888888877554422 277789999999999999999998887776653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 284 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-07
Identities = 44/319 (13%), Positives = 93/319 (29%), Gaps = 93/319 (29%)
Query: 4 RSSWVMGFGFSNSCRIPPLQTASGFSLLTTKLATSNPHLKCFLNQNKQPPVSNSNANASK 63
+++ F+ SC+I LLTT+ KQ V++ + A+
Sbjct: 254 QNAKAWN-AFNLSCKI----------LLTTR--------------FKQ--VTDFLSAATT 286
Query: 64 KNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFP 123
+ + + K L+ +LP E P
Sbjct: 287 THISLDHHSM----TLTPDEVKSLLLKYLDC--RPQDLPREVLTT-------------NP 327
Query: 124 LIAA--AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGT---------YDTLLLAFDKD 172
+ A+++R W V L+ +++ +D L + F
Sbjct: 328 RRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPS 384
Query: 173 HRADEA--ESLWN--------MILHT-QTRS-ISKRLFSRMISLYDHH-----------D 209
+W ++++ S + K+ IS+ +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 210 MPNKIIEVFA-----DMEELGVRPDEDTV-RRIASAFQRVGQDDKQKLVLKKYLSKWKYI 263
+ I++ + D ++L + I + + ++ L +L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----F 500
Query: 264 HFKGERVRVRRDAWYESGS 282
F +++R AW SGS
Sbjct: 501 RFLEQKIRHDSTAWNASGS 519
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 3e-05
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 7/216 (3%)
Query: 38 SNPHLKCFLNQNKQPPVSNSNANASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRI 97
+ H K + PV A K + Q L K + L R
Sbjct: 5 HHHHRKVQMGAKDATPVPCGRW-AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRR 63
Query: 98 VSELPNE-KHAVYGALDKWTAWETEFPLIAA-AKALRILRKRGQWLRVIQVAKWMLSKGQ 155
+ P + G L+ T E P A+ L+ + +
Sbjct: 64 LQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQL 123
Query: 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS---ISKRLFSRMISLYDHHDMPN 212
+ A L ++ H Q + ++ +++ ++ +
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLL-VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248
+++ V +++ G+ PD + R QD
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.84 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.51 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.43 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.05 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.05 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.02 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.96 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.89 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.88 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.79 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.76 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.75 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.73 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.68 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.68 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.65 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.63 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.63 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.54 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.52 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.51 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.5 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.5 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.5 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.46 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.41 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.4 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.39 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.36 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.34 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.3 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.29 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.28 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.21 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.2 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.16 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.13 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.05 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.04 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.03 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.02 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.01 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.99 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.96 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.95 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.94 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.94 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.93 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.92 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.91 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.9 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.89 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.89 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.89 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.89 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.88 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.86 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.85 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.81 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.78 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.75 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.73 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.72 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.71 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.68 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.66 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.63 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.63 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.6 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.55 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.49 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.44 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.4 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.35 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.34 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.31 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.26 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.16 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.16 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.12 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.09 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.03 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.01 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.92 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.84 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.83 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 96.28 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 95.94 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 95.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.62 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 95.51 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 95.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.25 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.58 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 94.15 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 93.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 93.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 93.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.39 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 93.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 92.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.51 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 91.35 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.41 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 90.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 89.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 86.65 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.18 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 82.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 82.42 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.73 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=245.45 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=151.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQ---------WLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~---------~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
.|..++|.++|+.|. ..+..||++|||.+|.+|++.+. +++|.++|++|.+.|+.||.+|||+||.+|
T Consensus 39 ~G~~~~A~~lf~~M~---~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 39 KGDVLEALRLYDEAR---RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp SCCHHHHHHHHHHHH---HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 466677888888775 46889999999999999998765 789999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
++.|++++|.++|++|.+.|+.| |..|||+||.+||+.|++++|+++|++|.+.|+.||..||++||.+|++.|++|+|
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCCc
Q 023326 250 KLVLKKYLSKWKYIH 264 (284)
Q Consensus 250 ~~l~~~m~~~~~~~~ 264 (284)
.++|++|.+......
T Consensus 195 ~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 195 YKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHHTSSBC
T ss_pred HHHHHHHHHhCCCcC
Confidence 999999998755443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=222.31 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCC
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR---------ADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~---------~~~A~~l~~~m~~~~~~~~~ 194 (284)
...++.+|.+|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++|.++|++|.+.|+.| |
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 345788899999999999999999999999999999999999999998765 788999999999999987 9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+...
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998743
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-25 Score=214.98 Aligned_cols=127 Identities=10% Similarity=0.044 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLS---KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~---~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
..||+++|.+||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.| |++|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 57899999999999999999999988764 5899999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHhCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023326 201 MISLYDHHDMP-NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKL 251 (284)
Q Consensus 201 lI~~~~~~G~~-~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~ 251 (284)
||.++|+.|+. ++|.++|++|.+.|+.||.+||+++|+++.+.+-++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 99999999985 7899999999999999999999999998887755544433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=184.81 Aligned_cols=102 Identities=9% Similarity=0.051 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILH---TQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~---~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
..|||+||++||+.|++++|.++|++|.+ .|+.| |++|||+||.|||+.|++++|+++|++|++.|+.||.+|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 68999999999999999999999988864 46776 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHhHHhcC
Q 023326 236 IASAFQRVGQ-DDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a~~~~G~-~d~a~~l~~~m~~~~~ 261 (284)
||.+||+.|+ .++|.++|++|.++.-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 9999999998 5789999999998854
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=122.76 Aligned_cols=155 Identities=11% Similarity=-0.076 Sum_probs=127.8
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|..+|+.+.. ....+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|+.+..+|.+.|++++|
T Consensus 386 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 386 VNKISEARRYFSKSST----MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred hccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666665543 123457788999999999999999999999988763 34778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD--EDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
.++|+++.+.. |.+..+|+.++..|.+.|++++|+++|++|.+. |..|+ ..+|..+..+|.+.|++++|.++
T Consensus 461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998764 447888999999999999999999999998776 77888 78999999999999999999999
Q ss_pred HHHhHHhc
Q 023326 253 LKKYLSKW 260 (284)
Q Consensus 253 ~~~m~~~~ 260 (284)
|+++.+..
T Consensus 539 ~~~~~~~~ 546 (597)
T 2xpi_A 539 LNQGLLLS 546 (597)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99887653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=116.09 Aligned_cols=156 Identities=10% Similarity=-0.042 Sum_probs=133.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|..+|+.+.. ....+..+|+.+..+|.+.|++++|+++|++|.+.. ..+..+|+.+...|.+.|++++|
T Consensus 420 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 420 EGEHDQAISAYTTAAR----LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HTCHHHHHHHHHHHHH----TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 4566666666665532 223478899999999999999999999999999764 34789999999999999999999
Q ss_pred HHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 179 ESLWNMILHT----QTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 179 ~~l~~~m~~~----~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.++|+++.+. +..|.+ ..+|+.+..+|.+.|++++|+++|+++.+.+ ..+..+|..+..+|.+.|++++|.++|
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999887 556633 7899999999999999999999999998775 338899999999999999999999999
Q ss_pred HHhHHhc
Q 023326 254 KKYLSKW 260 (284)
Q Consensus 254 ~~m~~~~ 260 (284)
+++.+..
T Consensus 574 ~~~l~~~ 580 (597)
T 2xpi_A 574 HESLAIS 580 (597)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-08 Score=74.87 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+...|.+.|++++|+.+|+++.+.. ..+...+..+...+...|++++|..+++++.+.+ |.+...|..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45566677999999999999999998764 3367888889999999999999999999998874 44778899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|++++|+++|+++.... ..+...+..+...|.+.|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999988753 235778888999999999999999999998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-07 Score=79.47 Aligned_cols=155 Identities=8% Similarity=-0.062 Sum_probs=114.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...|+..... ...+...+..+...|.+.|++++|+++|+++.+.+..| +...+..+...+.+.|++++
T Consensus 84 ~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 84 EMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 34555555555544321 12256677777788888888888888888887744455 45677778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|..++++..+.. |.+...|..+...|.+.|++++|+++|++..+.. ..+...+..+...+...|+.++|.++++++.
T Consensus 160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888888888764 4467778888888888888888888888876542 2456677788888888888888888888887
Q ss_pred Hhc
Q 023326 258 SKW 260 (284)
Q Consensus 258 ~~~ 260 (284)
+..
T Consensus 237 ~~~ 239 (252)
T 2ho1_A 237 RLY 239 (252)
T ss_dssp HHC
T ss_pred HHC
Confidence 654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-07 Score=79.43 Aligned_cols=156 Identities=9% Similarity=-0.030 Sum_probs=130.4
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+..... ...+...+..+-..|.+.|++++|++.|++..+.. ..+...|..+...|...|++++
T Consensus 49 ~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 467778888887765432 23356778888888999999999999999998764 2367889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|.++++++.+.+..|.+...|..+...|.+.|++++|++.|++..+.. ..+...+..+...|...|++++|..++++..
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998844455577889999999999999999999999987754 2357889999999999999999999999987
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 203 ~~ 204 (252)
T 2ho1_A 203 QG 204 (252)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-08 Score=88.11 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..++..+...|.+.|++++|+..|+++.+.. +-+..+|..+...+.+.|++++|..+++++++. .|.+..+|+.+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHH
Confidence 57788889999999999999999999998863 225678999999999999999999999999987 356889999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+.|++++|+++|+++.+. .| +..++..+...|.+.|++++|.+.|+++.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999998764 44 5779999999999999999999999998864
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-07 Score=75.45 Aligned_cols=134 Identities=10% Similarity=-0.110 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKR-GQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~-g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+...+..+...|... |++++|+..|+.+.+.+..|+ ...+..+...+.+.|++++|...++++.+.. |.+...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence 445555555556666 666666666666655322332 3455555556666666666666666665542 334555666
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
+...|.+.|++++|.++|++..+..-..+...+..+...+...|+.+.+..+++.+.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666666655432213444555555555666666666666655544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.7e-08 Score=83.65 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY---DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty---~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.+...+..+...|.+.|++++|.+.|+.+.+.. |+...+ ...+..+...|++++|..+|+++++. .|.+...|
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~ 203 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLL 203 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 345555555555556666666666665555542 332111 11222222335556666666655554 23455555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHhH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDK-QKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~-a~~l~~~m~ 257 (284)
+.+...|.+.|++++|++.|++..+. .| |..++..++..+...|+.++ +.++++++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 65666666666666666666554443 22 44455555555555555543 345555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-07 Score=73.01 Aligned_cols=157 Identities=11% Similarity=-0.084 Sum_probs=128.2
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-HRAD 176 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-g~~~ 176 (284)
..|..++|...|+..... ...+...+..+...|...|++++|+..|++..+.. ..+..++..+...+... |+++
T Consensus 20 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHH
Confidence 356666777766655321 22346678888888999999999999999998763 33678899999999999 9999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+|..+++++.+.+..|.+...|..+...|...|++++|++.|+++.+.. .-+...+..+...|...|++++|.+++++.
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999843445457889999999999999999999999987753 225778999999999999999999999998
Q ss_pred HHhc
Q 023326 257 LSKW 260 (284)
Q Consensus 257 ~~~~ 260 (284)
.+..
T Consensus 174 ~~~~ 177 (225)
T 2vq2_A 174 QSRV 177 (225)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-07 Score=82.81 Aligned_cols=151 Identities=13% Similarity=0.031 Sum_probs=100.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...++.... ....+..+|..+-..|.+.|++++|+..|+++.+. .| +..+|..+..++.+.|++++
T Consensus 46 ~~~~~~a~~~~~~a~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIK----QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSH
T ss_pred cCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHH
Confidence 3444455444433321 23345667777777777888888888888777764 34 34567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...|+++++.. |.+...+..+-..|...|++++|+++|+++.+. .| +..+|..+...|...|++++|...|+++
T Consensus 120 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 120 AVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777653 445566677777777777777777777777654 33 4567777777777777777777777776
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 196 l~~ 198 (388)
T 1w3b_A 196 VTL 198 (388)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-07 Score=71.66 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+...|.+.|++++|...|+...+.. +.+...+..+...+...|++++|.+++++..+.. |.+...|..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 117 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLG 117 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHH
Confidence 56777788888999999999999999988763 3467888999999999999999999999998874 45788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...|++++|+++|++..+.. ..+...+..+...|...|++++|.+.+++..+.
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999987764 336778999999999999999999999988754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-07 Score=84.92 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHc
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTL------------LLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~L------------l~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
.+..++..+...|.+.|++++|+..|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++++.
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34666777777777777777777777777654 333 3334333 56677777777777777777764
Q ss_pred CCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 189 QTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 189 ~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
. |.+ ...|..+...|.+.|++++|++.++++.+. .| +...|..+..+|...|++++|.+.+++..+.
T Consensus 287 ~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 287 E--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3 323 335777777777777777777777776654 34 5677777777777788888887777777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-07 Score=73.56 Aligned_cols=155 Identities=11% Similarity=0.008 Sum_probs=128.3
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+..... ...+...+..+...|.+.|++++|++.|++..+.. ..+...+..+...+.+.|++++
T Consensus 69 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 69 SVNELERALAFYDKALEL----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHH
T ss_pred HcCCHHHHHHHHHHHHHc----CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 356667777777655432 22367788888888999999999999999998764 3467788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|..++++..+.. |.+...|..+...|.+.|++++|++.|++..+.. ..+..++..+...|...|++++|.+.+++..
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4478889999999999999999999999987653 2357789999999999999999999999987
Q ss_pred Hhc
Q 023326 258 SKW 260 (284)
Q Consensus 258 ~~~ 260 (284)
+..
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-07 Score=83.30 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=120.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHH------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-M---GTYDTLLLA------ 168 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~---~ty~~Ll~~------ 168 (284)
.|..++|...|+.+... ..-+...+..+...|.+.|++++|+..|+++.+. .|+ . ..+..+...
T Consensus 73 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHH
Confidence 34555555555544321 2235778888889999999999999999999875 344 3 677777555
Q ss_pred ------HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 169 ------FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 169 ------~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
+.+.|++++|..+++++.+.. |.+..+|..+...|.+.|++++|+++|+++.+.. ..+..+|..+...|..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888999999999999998763 5588889999999999999999999999987652 2367899999999999
Q ss_pred cCCHHHHHHHHHHhHHh
Q 023326 243 VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~ 259 (284)
.|++++|.+.|+++.+.
T Consensus 224 ~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKL 240 (450)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-07 Score=79.07 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023326 90 KALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA 168 (284)
Q Consensus 90 ~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~ 168 (284)
.+..++-.......+.+...+.+..+......|+-. .+..+=..|.+.|++++|++.|+. ..+...+..+...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 344433333323333333444444433333346444 444445779999999999999987 4678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRL--FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~t--yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
+.+.|++++|.+.++.+.+.. |.+..+ ....+..+...|++++|+++|+++.+. ...+...++.+..++.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999999874 434321 233445555679999999999999887 345788999999999999999
Q ss_pred HHHHHHHHHhHHh
Q 023326 247 DKQKLVLKKYLSK 259 (284)
Q Consensus 247 d~a~~l~~~m~~~ 259 (284)
++|.+.|++..+.
T Consensus 217 ~eA~~~l~~al~~ 229 (291)
T 3mkr_A 217 EAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-07 Score=75.05 Aligned_cols=157 Identities=10% Similarity=-0.084 Sum_probs=117.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSKG-------------------- 154 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-------------------- 154 (284)
.+..++|...|+..-....- ..++ ...+..+-..|.+.|++++|+..|+...+..
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 45556666666554432221 1122 5777788888889999999999999888742
Q ss_pred ----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 155 ----QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 155 ----~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
..| +...|..+-..+...|++++|...+++.++.. |.+..+|..+...|.+.|++++|++.|++..+.. ..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 206 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF 206 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence 223 34577778888888999999999999888764 4477888889999999999999999999887653 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 230 EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 230 ~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|..+...|.+.|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 678888888899999999999998887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-06 Score=71.32 Aligned_cols=132 Identities=15% Similarity=0.047 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCC
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-----------HRADEAESLWNMILHTQTR 191 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-----------g~~~~A~~l~~~m~~~~~~ 191 (284)
+...+..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+.+. |++++|...+++.++. .
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~ 114 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--N 114 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--C
Confidence 34444455555777777777777777766542 12455666666666666 7777777777777664 3
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|.+...|..+-..|...|++++|++.|++..+.. .+...+..+-..|...|++++|...|++..+.
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4466667777777777777777777777766665 56667777777777777777777777766654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-07 Score=77.29 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=123.0
Q ss_pred HhcCCchHHHHHHHHHHHHHcc---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWE---TE-FPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLL 166 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~---~~-p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll 166 (284)
..+..++|...|.......... .. ....++..+-..|...|++++|+..|++..+. ...| ...+|..+-
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3577777877776554432211 11 23456777888899999999999999998764 2123 367888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC---------------
Q 023326 167 LAFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--------------- 225 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--------------- 225 (284)
..|...|++++|..++++.++. ...|....+|..+...|.+.|++++|+++|++..+..
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 9999999999999999998876 2233346778999999999999999999999876530
Q ss_pred --------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 226 --------------------------------VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 226 --------------------------------~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..| +..++..+...|...|++++|.+++++..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 113 33478888899999999999999999877543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-06 Score=71.53 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=106.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG--QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ------------------ 189 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g--~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~------------------ 189 (284)
|.+.|++++|+..|+...+.. ..|+ ..+|..+-..+.+.|++++|...+++..+..
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 889999999999999987643 2233 5889999999999999999999999998743
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 190 ------TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 190 ------~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|.+...|..+...|...|++++|++.|++..+.. ..+...|..+...|...|++++|.+.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 344467789999999999999999999999987753 2267889999999999999999999999987654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-07 Score=76.51 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQ------T 190 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~------~ 190 (284)
...+..+-..|...|++++|+..|++..+. +-.| ...+|..+-..|...|++++|..++.+.++.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666667799999999999999998765 3233 35688999999999999999999999887652 1
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 191 RSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 191 ~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|....+|..+...|...|++++|+++|++..+. +-.| +..++..+...|...|++++|.+++++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2335677999999999999999999999998765 2234 3558888999999999999999999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-06 Score=76.04 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=118.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ----------------------- 155 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~----------------------- 155 (284)
.|..++|...|+..-.. ..-+...+..+...|.+.|++++|+..|+++.+..-
T Consensus 112 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 112 NENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred CCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 46666777777655332 233578899999999999999999999999886420
Q ss_pred -------------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 156 -------------------GA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 156 -------------------~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
.| +..+|..+...|.+.|++++|..++++.++.. |.+..+|+.+...|.+.|++++
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 02 56778888888888888888888888888763 4577788888888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 214 IIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 214 A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|++.|++..+. .| +...|..+...|.+.|++++|.+.|++..+..
T Consensus 266 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 266 AVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888887765 34 46778888888888888888888888877543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-06 Score=71.81 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=122.2
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|+.... ....+...+..+-..|.+.|++++|+..|++..+.. ..+...+..+...+...|++++|
T Consensus 36 ~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ------CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHH
Confidence 3444555555544421 222356777778888999999999999999988763 33678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.++++++.+.. |.+...|..+...|.+.|++++|++++++..+.. ..+...+..+...|...|++++|.+.+++..+
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 111 KDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999874 4478889999999999999999999999987653 23677889999999999999999999999876
Q ss_pred hc
Q 023326 259 KW 260 (284)
Q Consensus 259 ~~ 260 (284)
..
T Consensus 188 ~~ 189 (243)
T 2q7f_A 188 QD 189 (243)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-07 Score=69.79 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.|..+-..+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++++.+.. |.+...|..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34455566899999999999999887542 3467889999999999999999999999998873 45788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|++++|+++|++..... ..+...+..+...|...|++++|.+++++..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 99999999999999987663 3467788899999999999999999999988664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.9e-07 Score=78.48 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|+..|++..+.. +.+..+|..+...+.+.|++++|..++++.++.. |.+..+|..+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMA 247 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 67888888899999999999999999998763 3357889999999999999999999999998864 55788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-----------DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-----------d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..|.+.|++++|++.|++..+..-.. +...|..+..+|.+.|+.++|..++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999987653221 46789999999999999999999986543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.3e-07 Score=79.60 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|+..|++..+.. +.+..+|+.+...|.+.|++++|...|++.++. .|.+..+|..+.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 288 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLG 288 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHH
Confidence 58889999999999999999999999998763 346889999999999999999999999999986 455788999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHC
Q 023326 203 SLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..|.+.|++++|++.|++..+.
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-06 Score=72.58 Aligned_cols=154 Identities=8% Similarity=-0.011 Sum_probs=117.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ----------------------- 155 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~----------------------- 155 (284)
.|..++|...|+..... ...+...+..+...|...|++++|+..|+.+.+..-
T Consensus 111 ~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 111 NEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred CcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 35555566555544321 223566777777777777887777777777665321
Q ss_pred ------------------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 156 ------------------------GA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 156 ------------------------~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.| +..++..+...+.+.|++++|..++++.++.. |.+..+|+.+...|.+.
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANG 264 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHc
Confidence 12 47888889999999999999999999998863 55788899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..+.. ..+...+..+...|.+.|++++|...|++..+.
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999987652 235778899999999999999999999988754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-07 Score=78.03 Aligned_cols=161 Identities=10% Similarity=0.112 Sum_probs=119.8
Q ss_pred hcCCchHHHHHHHHHHHH-Hc--cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWT-AW--ET-EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~-~~--~~-~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~ 167 (284)
.+..++|...|+..-... .. .. ......+..+-..|...|++++|+..|++..+. +-.| ....+..+-.
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 466666766665544322 11 11 123556777888899999999999999998764 3333 3567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC----------------
Q 023326 168 AFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG---------------- 225 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g---------------- 225 (284)
.+...|++++|..++++..+. +..+....+|..+...|.+.|++++|+++|++..+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 999999999999999998775 2233345678999999999999999999999877521
Q ss_pred -------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 226 -------------------------------VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 226 -------------------------------~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..| +..++..+...|.+.|++++|.++|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123 3457888889999999999999999887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-05 Score=63.54 Aligned_cols=154 Identities=15% Similarity=0.052 Sum_probs=124.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|...|+..-+. ..-++..+..+-..|.+.|++++|+..+........ -+...+..+-..+...++++.
T Consensus 17 ~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHH
Confidence 457777777777654321 223566777778889999999999999999887632 256677777788899999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|...+.+..+.. |.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|.+.|++++|.+.|++..
T Consensus 92 a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 92 AIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988864 5588889999999999999999999999987653 2266789999999999999999999999876
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 169 ~~ 170 (184)
T 3vtx_A 169 EK 170 (184)
T ss_dssp HT
T ss_pred hC
Confidence 53
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.8e-06 Score=72.12 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=122.3
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|...|+.... ....+...+..+-..|.+.|++++|+..|++..+.. +.+..++..+...+...|++++
T Consensus 76 ~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 35666667666665532 123356778888888999999999999999998764 3478899999999999999999
Q ss_pred HHHHHHHHHHcCCC-----------------------------------------------CC--CHHHHHHHHHHHHhC
Q 023326 178 AESLWNMILHTQTR-----------------------------------------------SI--SKRLFSRMISLYDHH 208 (284)
Q Consensus 178 A~~l~~~m~~~~~~-----------------------------------------------~~--~~~tyn~lI~~~~~~ 208 (284)
|...++++.+..-. |. +..+|..+...|.+.
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 99998887664321 22 467788888999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..... ..+...|..+...|...|++++|...+++..+.
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999877652 225678888889999999999999999888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.6e-07 Score=76.02 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=121.3
Q ss_pred hcCCchHHHHHHHHHHH-HHcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKW-TAWE---TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~---~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~ 167 (284)
.|..++|...|+..... .... .......+..+-..|...|++++|+..|++..+. +-.| ...+|..+-.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45555666555544332 1111 1123455667777799999999999999998764 3223 4578889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCC-HHHHH
Q 023326 168 AFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRPD-EDTVR 234 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~Pd-~~ty~ 234 (284)
.|...|++++|..++++.++. +..+.....|..+...|...|++++|+++|++..+. +..|+ ..++.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998876 223335667899999999999999999999998764 33443 44788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+...|...|++++|.+++++..+.
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998864
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-06 Score=73.11 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..|...|++++|+..|++..+.. +.+..+|..+-..+...|++++|...+++.++.. |.+..+|..+...|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHH
Confidence 34444444777777777777777766542 2246667777777777777777777777776653 33556677777777
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|++.|+++.+. .|+...+..++..+...|++++|...+++....
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777777777777776653 344444444444555667777777777655544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-06 Score=72.13 Aligned_cols=135 Identities=8% Similarity=-0.099 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|...|++++|+..|++..+..- .+...+..+-..+...|++++|..++++..+.. |.+..+|..+.
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~ 200 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVG 200 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 456677777778888888888888888776532 234566667788888888888888888887753 45777888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELG--------VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g--------~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|++.|++..+.. ...+...|..+...|...|++++|...+++..+..
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 88888888888888888876531 12345678888888888888888888888877653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-05 Score=68.49 Aligned_cols=100 Identities=9% Similarity=0.128 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+..++..+...+.+.|++++|..++++..+.. |.+..+|..+...|...|++++|++.|++..+.. ..+...+..+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 56788888888999999999999999998864 4578889999999999999999999999987653 23577888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.+++..+..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-06 Score=73.29 Aligned_cols=135 Identities=8% Similarity=-0.098 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CCCH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-------SISK 195 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-------~~~~ 195 (284)
+...+..+-..|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|..++++..+..-. +...
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 34566678888999999999999999998763 346789999999999999999999999999875311 3356
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|..+...|.+.|++++|++.|++..+..- -+...+..+...|.+.|++++|.+.+++..+.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 7899999999999999999999999877632 26678899999999999999999999987654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=9.4e-06 Score=59.67 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=98.0
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+.+... ...+...+..+...+...|++++|..+|+++.+.+ ..+...+..+...+...|++++
T Consensus 13 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHH
Confidence 346666777777655432 22356777888888999999999999999998764 3467788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
|..+++++.+.. |.+..+|..+...|.+.|++++|.+.|+++.+.
T Consensus 88 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 88 AIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999998864 447788999999999999999999999998754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-05 Score=65.50 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=106.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
-..+.+.|++++|+..|++. +.|+...|..+-..+.+.|++++|...+++.++.. |.+...|..+-..|...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 33488999999999999876 46788999999999999999999999999998874 5588889999999999999
Q ss_pred hhHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 211 PNKIIEVFADMEELG--------------VRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g--------------~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+++|++.|++..+.. ..|+ ...+..+-..|.+.|++++|.+.|++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999988753 2222 3578888899999999999999999887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.6e-08 Score=91.38 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|+.+ ..|..|+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~ 156 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAS 156 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHH
Confidence 3444445555555555555554443 245556666666666666666666666644 13788888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.+++.|++++|++.++++ -+..||..++.+|...|+++.|....
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888887 27889999999999999999885543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-05 Score=62.47 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..+=..|.+.|++++|+..|++.++.. +-+...|..+-..|.+.|++++|...+....... |.+...+..+-
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34556666666999999999999999988763 2267889999999999999999999999998864 44778889999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..+...++++.|.+.+.+..... .-+...+..+-..|.+.|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 99999999999999999877653 225678888889999999999999999988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-06 Score=68.07 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..+.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|...+++.++. .|.+...|..+-
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 33455555566999999999999999988652 236788889999999999999999999999986 466888899999
Q ss_pred HHHHhC-----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHH-----------DMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~-----------G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|.+. |++++|++.|++..+. .| +...+..+-..|...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999999 9999999999998765 45 56688888899999999999999999987653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=87.30 Aligned_cols=122 Identities=9% Similarity=-0.056 Sum_probs=85.2
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
.......|+..+++.+-..|...|++++|...|..+ ..|..|..++.+.|++++|.+.+..+ . +
T Consensus 113 ~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~-~ 176 (449)
T 1b89_A 113 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N-S 176 (449)
T ss_dssp HTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T-C
T ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C-C
Confidence 344556788889999999999999999999999977 37899999999999999999999887 2 7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..+|..++.+|+..|+++.|......+ .+.||. ...++..|.+.|.+++|..+++.-.
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 788999999999999999996655442 234444 5578889999999999999887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-05 Score=58.20 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+++|+++.+.. ..+..++..+...+.+.|++++|..+++++.+.. |.+..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3455566667889999999999999988753 3357788888888999999999999999988764 447788889999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.|...|++++|++.|+++.+..- -+...+..+-..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 99999999999999998876531 13334444444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-05 Score=65.63 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..+...=..+.+.|++++|+..|+...+..-.++...+..+-..+.+.|++++|...+++.++. .|.+...|..+-..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444444558888999999999998887654467777777888888899999999999988875 35577788888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRP-DE-------DTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~P-d~-------~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|++.|++..+.. | +. ..|..+-..+...|++++|.+.|++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999999998876642 3 23 45666777788889999999998887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-05 Score=69.06 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=118.4
Q ss_pred cCCchHHHHHHHHHHHHHccCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFP-LI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD-KDHRAD 176 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~-~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~-~~g~~~ 176 (284)
|..++|+.+|+..- ...|+ .. .|..+...+.+.|++++|..+|++..+..- .+...|........ ..|+.+
T Consensus 113 ~~~~~A~~~~~~al-----~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLL-----AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHH-----TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred CCHHHHHHHHHHHH-----hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 44445555554442 23343 33 788888889999999999999999987642 33445544333322 369999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRP--DEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~P--d~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
+|..+|+..++. .|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999876 35588889999999999999999999999998874 455 4668888999999999999999999
Q ss_pred HHhHHhcC
Q 023326 254 KKYLSKWK 261 (284)
Q Consensus 254 ~~m~~~~~ 261 (284)
+++.+.+.
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.7e-05 Score=66.60 Aligned_cols=153 Identities=12% Similarity=0.045 Sum_probs=122.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH---------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA----TMGTYDTL--------- 165 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p----~~~ty~~L--------- 165 (284)
.|..++|...|+..-.. ..-+...+..+-..|.+.|++++|+..|++..+. .| +...+..+
T Consensus 50 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHH
Confidence 46666666666554321 2225677888888899999999999999999875 45 33444444
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 166 ---LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 166 ---l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
...+...|++++|..+++++.+.. |.+...|..+...|...|++++|++.|++..+.. ..+...+..+...|..
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 477889999999999999998864 4578889999999999999999999999988763 3367789999999999
Q ss_pred cCCHHHHHHHHHHhHHhc
Q 023326 243 VGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~ 260 (284)
.|++++|...+++..+..
T Consensus 201 ~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999887653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-06 Score=75.67 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=76.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|+++.+.. ||..+|..+..++.+.|++++|...++++++.+ |.+..+|..+...|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence 888899999999999988875 788899999999999999999999999988864 5578889999999999999999
Q ss_pred HHHHHHHHHHCC
Q 023326 214 IIEVFADMEELG 225 (284)
Q Consensus 214 A~~l~~~M~~~g 225 (284)
|+..|+++...+
T Consensus 92 A~~~~~~~~~~~ 103 (514)
T 2gw1_A 92 AMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhcC
Confidence 999998886654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=78.58 Aligned_cols=134 Identities=8% Similarity=-0.073 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
|+...+..+...|.+.|++++|+..|+...+.. +.+..+|..+...+...|++++|...+++..+.. |.+...|..+
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 344 (514)
T 2gw1_A 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQL 344 (514)
T ss_dssp CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHH
Confidence 335666666666777777777777777766542 2245566677777777777777777777776643 3355567777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++++|+++|+++.+.. .-+...+..+...|...|++++|.+.++++.+.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777777777777777766542 124456667777777777777777777776643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-06 Score=79.30 Aligned_cols=152 Identities=9% Similarity=0.015 Sum_probs=125.2
Q ss_pred cCC-chHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 023326 100 ELP-NEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD------ 172 (284)
Q Consensus 100 ~~~-~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~------ 172 (284)
+.. ++|...|+..-.. ..-+...|..+-..|.+.|++++|++.|+...+. .|+...+..+-..+...
T Consensus 116 g~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKL----EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp SSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHH
T ss_pred cccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChh
Confidence 555 6676666544321 2224677788888899999999999999999876 47788899999999999
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 023326 173 ---HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH--------DMPNKIIEVFADMEELGVR--PDEDTVRRIASA 239 (284)
Q Consensus 173 ---g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~--------G~~~~A~~l~~~M~~~g~~--Pd~~ty~~ll~a 239 (284)
|++++|...+++.++.. |.+...|..+-..|... |++++|++.|++..+..-. -+...|..+-..
T Consensus 190 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 99999999999999864 55888899999999999 9999999999998775211 378899999999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|.+.|++..+.
T Consensus 268 ~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=4.5e-06 Score=70.01 Aligned_cols=124 Identities=12% Similarity=-0.008 Sum_probs=106.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQG--A-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~--p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...|++++|+..|+++.+.... | +..+|..+-..+...|++++|...|++.++.. |.+..+|..+...|...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccC
Confidence 44568899999999999986421 1 46788999999999999999999999999874 5578899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+++|++.|++..+.. ..+...+..+...|...|++++|.+.++++.+..
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999988753 2257789999999999999999999999998653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-05 Score=67.17 Aligned_cols=153 Identities=14% Similarity=-0.006 Sum_probs=123.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|...|+..-. ...-+...+..+-..|.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|
T Consensus 16 ~g~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 16 AGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence 4666667666665532 122356777888888999999999999999998763 22678899999999999999999
Q ss_pred HHHHHHHHHcCCCC---CCHHHHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 179 ESLWNMILHTQTRS---ISKRLFSRM------------ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 179 ~~l~~~m~~~~~~~---~~~~tyn~l------------I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
...+++..+.. | .+...+..+ ...|...|++++|+++|+++.+.. ..+...+..+...|...
T Consensus 91 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 91 EDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKE 167 (359)
T ss_dssp HHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHC
Confidence 99999998763 3 355555555 588999999999999999987653 23677889999999999
Q ss_pred CCHHHHHHHHHHhHHh
Q 023326 244 GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 244 G~~d~a~~l~~~m~~~ 259 (284)
|++++|...+++..+.
T Consensus 168 ~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 168 GEPRKAISDLKAASKL 183 (359)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998865
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-05 Score=61.54 Aligned_cols=122 Identities=8% Similarity=-0.051 Sum_probs=100.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+...|++++|+..|+...+.. +.+..++..+-..+...|++++|...+++.++.. |.+...|..+...|.+.|++++
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHHH
Confidence 899999999999999988753 2367888899999999999999999999998874 5578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPDEDTV--RRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty--~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++.|++..+..-. +...+ ..+...+.+.|++++|.+.+......
T Consensus 100 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 100 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999998765322 33344 44444577889999999999876543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.4e-06 Score=75.33 Aligned_cols=152 Identities=6% Similarity=-0.128 Sum_probs=125.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|..... ..|+...+..+-..|.+.|++++|+..|+...+.. +.+..+|..+-..+...|++++|
T Consensus 256 ~~~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 256 KNNLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp TTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445556555554432 34667788888888999999999999999998764 23678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
...+++.++.. |.+...|..+...|.+.|++++|+++|++..+.. .-+...+..+...|...|++++|.+.+++..+
T Consensus 330 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999864 4467789999999999999999999999988763 22566888899999999999999999999875
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
.
T Consensus 407 ~ 407 (537)
T 3fp2_A 407 L 407 (537)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.2e-06 Score=79.79 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=123.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~ 175 (284)
-.|..++|...|+..-+ ..| +..+|..+=..|.+.|++++|++.|++.++. .| +...|+.|-..|.+.|++
T Consensus 21 ~~G~~~eAi~~~~kAl~-----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 35666667666654422 123 3566677777799999999999999998875 34 478999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++|.+.|++.++. .|.+...|+.+-..|.+.|++++|++.|++..+. .| +...|..+...|...|++++|.+.++
T Consensus 94 ~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 94 QGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 9999999999886 4668899999999999999999999999997765 45 46689999999999999999998888
Q ss_pred HhHH
Q 023326 255 KYLS 258 (284)
Q Consensus 255 ~m~~ 258 (284)
+..+
T Consensus 170 kal~ 173 (723)
T 4gyw_A 170 KLVS 173 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-05 Score=78.19 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
..+|+.+=..|.+.|++++|++.|++-++. .| +...|+.|-..|.+.|++++|.+.|++.++. .|.+...|+.+-
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445666666699999999999999998876 34 4789999999999999999999999999886 466888999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+.|++++|++.|++..+. .| +...|+.+-..|...|++++|.+.|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999997765 45 5678999999999999999999999988764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-05 Score=66.83 Aligned_cols=130 Identities=8% Similarity=0.017 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.+..+-..|.+.|++++|+..|+...+.+-.|+ ...|..+-..+.+.|++++|...++...+.. |.+..+|..+-.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 116 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS 116 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 445555567777777777777777766332222 3346666677777777777777777776653 335566777777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|...|++++|++.|++..+. .| +...|..+-..+...+++++|.+.|++..+.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777765544 33 3344444442344445777777777766654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-05 Score=73.79 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
++..+-..+...|++++|+..|+...+. .|+..+|..+-..+...|++++|..++++..+.. |.+..+|..+...|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHH
Confidence 4556666788999999999999999986 4668889999999999999999999999999874 45788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|++++|++.|++..+..- -+...|..+...|...|++++|.+++++..+..
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999887542 245788899999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-05 Score=68.79 Aligned_cols=135 Identities=5% Similarity=-0.024 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CH
Q 023326 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQG-ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SK 195 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~-p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~ 195 (284)
.++..++..+-.++...|++++|++++.+-+..|-. -+...+..++..+.+.|+.+.|.++++.|.+. .|. +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 456666667778899999999999999988766532 35678889999999999999999999999876 220 24
Q ss_pred HHHHHHHHH--HHh--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISL--YDH--HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~--~~~--~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+..-|..+ ... .++.++|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555 332 34999999999998665 466555566666899999999999999977654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00025 Score=59.75 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+=..|.+ .|++++|+..|+...+.+ +...+..|-..|.. .+++++|...|++..+.+ +
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 67777777778888 899999999998888775 67788888888888 889999999998888764 4
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..+-..|.. .|++++|++.|++..+.+ +...+..+-..|.. .|+.++|.+.|++..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 5567777777877 889999999999887775 56777778888888 89999999998887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-05 Score=56.31 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...|..+...+...|++++|.++++++.+.. |.+..+|..+...|.+.|++++|+.+|+++.+.. ..+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 5678888899999999999999999998864 4578889999999999999999999999988753 236778899999
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-05 Score=55.99 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..+...|++++|+..|++..+.. ..+...+..+-..+...|++++|...++...+.. |.+...|..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHH
Confidence 34444455889999999999999988753 3367888889999999999999999999998863 55788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.+.|++++|++.|++..+..- -+...+..+...+...|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 999999999999999876532 2566777777777776653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-05 Score=67.03 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=104.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSRMISLYDHH 208 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~ 208 (284)
.-..+.+.|++++|+..|++..+.. +-+...+..+-..+...|++++|...+++.++....+. ....|..+-..|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3345888999999999999998763 12344788888899999999999999999998542221 244589999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..+..- -+...|..+-..|...|++++|.+.+++..+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 999999999999877532 25578999999999999999999999887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.1e-05 Score=71.00 Aligned_cols=134 Identities=8% Similarity=-0.068 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|.+.|++++|.+.+++.++.. |.+...|..+-
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 98 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLG 98 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 35566666667899999999999999988753 2357788889899999999999999999998864 55788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV---GQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~---G~~d~a~~l~~~m~~~~ 260 (284)
..|.+.|++++|++.|++..+..- -+...+..+...+... |+.++|.+.+++..+..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999999999999876532 2567888888999999 99999999998887553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00014 Score=59.56 Aligned_cols=140 Identities=9% Similarity=0.028 Sum_probs=108.6
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~ 176 (284)
..+..++|...|+..-. ....++...+..+-..|.+.|++++|+..|+...+. .| +...|..+-..+.+.|+++
T Consensus 19 ~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLK---LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HTTCHHHHHHHHHHHHH---HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHH
T ss_pred HccCHHHHHHHHHHHHh---ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHH
Confidence 35666667666655432 112256666666777899999999999999998875 34 4678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCH
Q 023326 177 EAESLWNMILHTQTRSISK-------RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---EDTVRRIASAFQRVGQD 246 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~-------~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~~ty~~ll~a~~~~G~~ 246 (284)
+|...+++.++.. |.+. ..|..+-..+...|++++|++.|++..+. .|+ ...|..+-..|...|..
T Consensus 94 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 94 EYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999864 4455 55788888899999999999999997654 666 45777777888888877
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00016 Score=60.89 Aligned_cols=145 Identities=8% Similarity=-0.019 Sum_probs=121.8
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--- 171 (284)
.+..++|...|....+ .-+..++..+-..|.. .|++++|+..|++-.+.+ +...+..|-..|..
T Consensus 19 ~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp TTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence 4666667777665432 2355677777788888 999999999999998886 77888888888999
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 023326 172 -DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR---- 242 (284)
Q Consensus 172 -~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~---- 242 (284)
.+++++|...|++..+.+ +...+..+-..|.. .|++++|++.|++..+.+ +...+..+-..|..
T Consensus 90 ~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred cccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 999999999999998863 66778889999999 999999999999998877 66778888888888
Q ss_pred cCCHHHHHHHHHHhHHh
Q 023326 243 VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~ 259 (284)
.++.++|.+.|++..+.
T Consensus 163 ~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL 179 (273)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 99999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6.2e-05 Score=66.46 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=104.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT--------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~--------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.|.+.|++++|+..|++.++..-... ...|..+-..|.+.|++++|...+++.++.. |.+...|
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~ 233 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGL 233 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 39999999999999999887642211 5889999999999999999999999999864 5688899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHhHHhc
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQ-KLVLKKYLSKW 260 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a-~~l~~~m~~~~ 260 (284)
..+-.+|...|++++|++.|++..+. .| +...+..+-..+.+.|+.+++ .+++..|..+.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765 34 567888888999999999988 55777776553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-05 Score=65.16 Aligned_cols=161 Identities=10% Similarity=-0.003 Sum_probs=118.5
Q ss_pred HhcCCchHHHHHHHHHH-HHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDK-WTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFD 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~-~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~ 170 (284)
..|..++|...|...-. +...+..++ ..+|+.+-..|.+.|++++|+..|++-.+. |-.. -..+|+.+-..|.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35777777777754433 222322222 457788888899999999999999987643 2111 1457888889999
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHH
Q 023326 171 KD-HRADEAESLWNMILHTQTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE------DTVRRIASA 239 (284)
Q Consensus 171 ~~-g~~~~A~~l~~~m~~~~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~------~ty~~ll~a 239 (284)
.. |++++|...|++.++..-...+ ..+|+.+...|.+.|++++|++.|++..+....... ..|..+...
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 9999999999988764321111 356889999999999999999999998876533222 157777888
Q ss_pred HHHcCCHHHHHHHHHHhHH
Q 023326 240 FQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~ 258 (284)
+...|++++|...|++..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.21 E-value=9.4e-05 Score=62.14 Aligned_cols=156 Identities=8% Similarity=0.054 Sum_probs=113.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHh-
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDK- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~- 171 (284)
.|..++|...|+.+-. ..|+ ...+..+-..|.+.|++++|+..|+...+..- .|+ ...+..+-..+.+
T Consensus 28 ~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp TTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 4556666666655421 2232 45566666779999999999999999987631 223 4566667777777
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCCHHHH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 172 -------DHRADEAESLWNMILHTQTRSISKRLF-----------------SRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 172 -------~g~~~~A~~l~~~m~~~~~~~~~~~ty-----------------n~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
.|++++|...|++.++..-. +...+ -.+-..|.+.|++++|+..|++..+..-.
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999999999999987533 33333 45578899999999999999998765322
Q ss_pred -C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHhHHhcC
Q 023326 228 -P-DEDTVRRIASAFQRV----------GQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 228 -P-d~~ty~~ll~a~~~~----------G~~d~a~~l~~~m~~~~~ 261 (284)
+ ....+..+..+|... |++++|...+++..+.+.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 2 234677777788766 899999999999988765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.6e-05 Score=64.33 Aligned_cols=146 Identities=7% Similarity=0.058 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHH
Q 023326 103 NEKHAVYGALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MG-TYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 103 ~~a~~vf~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~-ty~~Ll~~~~~~g~~~~A 178 (284)
++|..+|+.. +. ..| +...+..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|
T Consensus 81 ~~A~~~~~rA-----l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 81 DEAANIYERA-----ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHH-----HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHH-----HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHH
Confidence 5566665543 22 234 4567888888999999999999999999974 454 33 799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-HhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLY-DHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~-~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+|++.++.. |.+...|....... ...|++++|.++|++..+. .| +...|..++..+.+.|++++|..+|++.
T Consensus 154 ~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 154 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998864 33555565443332 2379999999999998664 23 5678889999999999999999999999
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 230 l~~ 232 (308)
T 2ond_A 230 LTS 232 (308)
T ss_dssp HHS
T ss_pred Hhc
Confidence 875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-05 Score=68.58 Aligned_cols=153 Identities=5% Similarity=-0.004 Sum_probs=120.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQ-WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~-~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...|+..-. ...-+...|+.+-..|.+.|+ +++|+..|++.++.. .-+...|+.+-..+.+.|++++
T Consensus 110 ~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 110 DERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp TCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred CCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence 4667777777765532 222356777888888889997 999999999988763 2267788889899999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR-VGQDDKQ-----KL 251 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~-~G~~d~a-----~~ 251 (284)
|...|++.++. .|.+...|..+-..|.+.|++++|++.|+++.+.... +...|+.+-..+.+ .|..++| .+
T Consensus 185 Al~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 185 ELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 99999999986 4568889999999999999999999999998876432 67788888888888 6665777 46
Q ss_pred HHHHhHHh
Q 023326 252 VLKKYLSK 259 (284)
Q Consensus 252 l~~~m~~~ 259 (284)
.+++..+.
T Consensus 262 ~~~~Al~l 269 (382)
T 2h6f_A 262 YTLEMIKL 269 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.7e-05 Score=54.96 Aligned_cols=117 Identities=7% Similarity=0.033 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+..|++..+.. ..+...+..+-..+...|++++|...+++.++.. |.+...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 4445555556888999999999999887652 2367788888888888999999999999888763 447778888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
.|.+.|++++|++.|++..+..-. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 999999999999999887654211 2334444444554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5.3e-05 Score=55.53 Aligned_cols=110 Identities=6% Similarity=0.038 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCC----HHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SIS----KRLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~----~~tyn~ 200 (284)
.+..+-..+...|++++|+..|+...+.. +.+...+..+-..+...|++++|...+++.++..-. +.+ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34455556889999999999999988763 336778888888899999999999999988776422 112 677888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
+...|.+.|++++|.+.|++..+. .|+......+-.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 899999999999999999998775 355544444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00011 Score=63.00 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGATM----GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRLFS 199 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~tyn 199 (284)
..+..+...|++++|..++++..+.. ..|+. ..|..+...+...|++++|...+++..+......+ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677899999999999999988743 23332 23445666667778999999999999885443323 34699
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH----C-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEE----L-GVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~----~-g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+-..|...|++++|++.|++..+ . +..+... +|..+...|.+.|++++|.+.+++..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999763 2 3334333 788899999999999999999987764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00026 Score=65.98 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL-AFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..|......+.+.|++++|.++|+.-.+..- .+...|..... .+...|+.++|..+|+..++.. |.+...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4788888888889999999999999886521 12222322221 2346899999999999888763 557888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELG-VRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g-~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.+.|+.++|..+|++....+ ..|+ ...|...+.-....|+.+.+..++.++.+.+.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999988764 3343 55788888888889999999999988876654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.09 E-value=6e-05 Score=59.64 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...+..+-..|.+.|++++|+..|+...+.. |+...+..+... +...+...+|...+++.++. .|.+...+..+
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~l 114 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACEL 114 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34555666667999999999999999876543 344433322111 22223334567888888875 46688889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|...|++++|++.|++..+..-.+ +...+..+...|...|+.++|...|++....
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999988775433 4668889999999999999999999877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-05 Score=57.35 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~t 197 (284)
+..+-..|...|++++|+..|++..+..- .++ ..++..+-..+...|++++|...+++..+..-...+ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444558899999999999998765321 112 257888888899999999999999887654322112 456
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+..+-..|...|++++|++.+++..+. +..+ ....+..+-..|...|++++|.+.+++..+..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 788889999999999999999986543 3222 23467888889999999999999998876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.6e-05 Score=65.09 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=101.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSK----GQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRLFSRM 201 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~----g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~tyn~l 201 (284)
...|...|++++|+..|++..+. |-.++ ..+|+.+-..|.+.|++++|...+++.++......+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44588999999999999987653 32222 578999999999999999999999888765322112 4578899
Q ss_pred HHHHHhC-CChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 202 ISLYDHH-DMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 202 I~~~~~~-G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-..|... |++++|++.|++-.+. |-.+. ..+|..+...|.+.|++++|...|++..+..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999996 9999999999986543 21111 3578888999999999999999999988654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00038 Score=58.31 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRM 201 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~l 201 (284)
+-..-..+.+.|++++|+..|+...+.. |+ ...+..+-..|.+.|++++|...|+..++..-. +.....|..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3333444889999999999999998763 33 567788888899999999999999999987532 2234567777
Q ss_pred HHHHHh--------CCChhHHHHHHHHHHHCCC-CCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 202 ISLYDH--------HDMPNKIIEVFADMEELGV-RPDEDTV---------------RRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 202 I~~~~~--------~G~~~~A~~l~~~M~~~g~-~Pd~~ty---------------~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
-..|.. .|++++|++.|++..+..- .+..... ..+-..|.+.|++++|...|++..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 788888 9999999999999876531 1222211 455677899999999999999998
Q ss_pred HhcC
Q 023326 258 SKWK 261 (284)
Q Consensus 258 ~~~~ 261 (284)
+.+.
T Consensus 176 ~~~p 179 (261)
T 3qky_A 176 DAYP 179 (261)
T ss_dssp HHCT
T ss_pred HHCC
Confidence 7755
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.1e-05 Score=58.26 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRA--DEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~--~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+...+..+-..|...|++++|+..|++..+.. +.+...+..+-.. +...|++ ++|...+++.++.. |.+...|.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--SNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--CCcHHHHH
Confidence 45566666666777777777777777766542 1245555556555 5566776 77777777776653 44566677
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+...|...|++++|++.|++..+.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777777777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00014 Score=65.57 Aligned_cols=128 Identities=9% Similarity=0.083 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..+=.+|.+.|++++|+..|+..++.. .-+...|..+-.++.+.|++++|...++++++.. |.+...|+.+-
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg 241 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRY 241 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 44555555555777777777777777777652 2256677777777777777777777777777753 44677777777
Q ss_pred HHHHh-CCChhHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDH-HDMPNKI-----IEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~-~G~~~~A-----~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..|.+ .|..++| ++.|++.... .| +...|+.+-..+.+.|. +...+.++..
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~-~~~~~a~~~~ 299 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGL-SKYPNLLNQL 299 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCG-GGCHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCc-cchHHHHHHH
Confidence 77777 5555666 3666665553 45 45566666666666664 2234444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=68.54 Aligned_cols=149 Identities=7% Similarity=-0.037 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLY 205 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~ 205 (284)
.....|...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+..... +++ ...+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 34566889999999999999988654 55445555555788999999999999855432 212 23577778899
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC--------------Cccccce
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDE--DTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY--------------IHFKGER 269 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~--~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~--------------~~~~g~~ 269 (284)
.+.|++++|++.|++-......|.. ......-.++.+.|+.++|..+|+++...... ..-.-++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~~~~~~~~~t~~~~ 261 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQ 261 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHHCTTCCCCCCCHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHhCCCCCCCCCcHHH
Confidence 9999999999999997743333652 35566667888999999999999999765332 1114455
Q ss_pred eeeecccccccCC
Q 023326 270 VRVRRDAWYESGS 282 (284)
Q Consensus 270 ~~~~~~~~~~~~~ 282 (284)
+..+++-|.|.-+
T Consensus 262 i~~r~d~wdp~s~ 274 (282)
T 4f3v_A 262 IASRADPWDPGSV 274 (282)
T ss_dssp HHTBSSTTCGGGB
T ss_pred HHHhcCCCCCccC
Confidence 6788899988644
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00027 Score=55.09 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
.+..+-..+.+.|++++|...|+..++. .|.+...|..+-..|.+.|++++|++.|++..+..-. +...|..+-.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 4444445555566666666666666554 2445555666666666666666666666655443211 334555555556
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.6e-05 Score=69.53 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=112.8
Q ss_pred ccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHH
Q 023326 118 WETEFPLIAAAKALRILRKR---------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD--------HRADEAES 180 (284)
Q Consensus 118 ~~~~p~~~~y~~~i~~~~~~---------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~--------g~~~~A~~ 180 (284)
+...|+...+..+-..|.+. |++++|++.|++..+.. +-+...|..+-.+|... |++++|..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 44568878888888888888 99999999999988763 23578899999999988 99999999
Q ss_pred HHHHHHHcCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 181 LWNMILHTQTRS---ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 181 l~~~m~~~~~~~---~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.|++.++. .| .+...|..+-..|.+.|++++|++.|++..+.. | +...+..+-..+...|++++|.+.+.++
T Consensus 243 ~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999986 34 588899999999999999999999999987653 4 5567888889999999999998765544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00015 Score=53.33 Aligned_cols=100 Identities=12% Similarity=-0.012 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~l 236 (284)
.+...|..+-..+.+.|++++|..++++..+. .|.+...|..+...|...|++++|++.|++..+.. ..+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 35678888999999999999999999999876 35578889999999999999999999999987753 2267788889
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++++|.+.|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999988765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=54.24 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=74.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|++.|++.++.. +-+...|..+-.+|.+.|++++|...+++.++. .|.+...|..+-..|...|++++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHCCCHHH
Confidence 889999999999999887653 236788888888899999999999999998886 45578889999999999999999
Q ss_pred HHHHHHHHHHC
Q 023326 214 IIEVFADMEEL 224 (284)
Q Consensus 214 A~~l~~~M~~~ 224 (284)
|++.|++..+.
T Consensus 100 A~~~~~~al~l 110 (126)
T 4gco_A 100 AQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0006 Score=56.04 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=110.0
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHH-----
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATM-GTYDTLLLAFD----- 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~-~ty~~Ll~~~~----- 170 (284)
..|..++|...|+.+.... .........+..+-.+|.+.|++++|+..|++..+.. -.+.. ..+-.+-..+.
T Consensus 16 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 3567777777777664310 0011113456667778999999999999999998753 22222 12322333333
Q ss_pred -------------hcCCHHHHHHHHHHHHHcCCCCCCHHHHH-----------------HHHHHHHhCCChhHHHHHHHH
Q 023326 171 -------------KDHRADEAESLWNMILHTQTRSISKRLFS-----------------RMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 171 -------------~~g~~~~A~~l~~~m~~~~~~~~~~~tyn-----------------~lI~~~~~~G~~~~A~~l~~~ 220 (284)
..|+.++|...|+++++.. |.+...+. .+-..|.+.|++++|+..|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 2578999999999999875 33433332 345578899999999999999
Q ss_pred HHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 221 MEELGVRPD----EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 221 M~~~g~~Pd----~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.+.- |+ ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 173 ~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 173 MLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 87753 33 24688888999999999999999998886643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00032 Score=52.20 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+-..+.+.|++++|+..|+...+.. +-+...|..+-..+...|++++|...++..++.. |.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 355666677777788888888888888776653 2246677777777788888888888888877753 4467778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-..|...|++++|++.|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00077 Score=48.04 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..+..+-..+...|++++|+..|+...+.. +.+...+..+-..+.+.|++++|...+++..+.. |.+...|..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 344455556888999999999999887753 2367788888888889999999999999988864 4477888889999
Q ss_pred HHhCCChhHHHHHHHHHHHC
Q 023326 205 YDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~ 224 (284)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00032 Score=54.48 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
+..+-..|.+.|++++|+..|++..+.. .-+...|..+-..|.+.|++++|...+++.++.. |.+...|..+-..|.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344445899999999999999988763 2267889999999999999999999999999874 557888999999999
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 023326 207 HHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g 225 (284)
+.|++++|++.|++..+..
T Consensus 91 ~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 9999999999999877653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00012 Score=62.80 Aligned_cols=131 Identities=8% Similarity=0.012 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQG-AT----MGTYDTLLLAFDKDHRADEAESLWNMILHT-----QTRSISKRLF 198 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~-p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~~~~~~~ty 198 (284)
.+-..+...|++++|+..|+...+.... ++ ..+|+.|-..|...|++++|..++++..+. +..+....+|
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 3444566778999999999999874322 23 347999999999999999999999998742 1122233578
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHhHHh
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEE----LGVRPD-EDTVRRIASAFQRVG-QDDKQKLVLKKYLSK 259 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~----~g~~Pd-~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~~ 259 (284)
+.+-..|.+.|++++|++.+++..+ .+..+. ...|..+-..|.+.| ..++|.+.+++...-
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999987543 444444 568888889999999 569999999877643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00036 Score=52.28 Aligned_cols=97 Identities=10% Similarity=-0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
..+..+=..|.+.|++++|.+.|++.++. .|.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 56777778899999999999999999886 46688999999999999999999999999987653 2256789999999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00027 Score=61.86 Aligned_cols=150 Identities=4% Similarity=-0.154 Sum_probs=107.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHH-
Q 023326 99 SELPNEKHAVYGALDKWTAWETEF---PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-----TMGTYDTLLLAF- 169 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p---~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-----~~~ty~~Ll~~~- 169 (284)
.|..++|.+.+... +...| +...+..++..|.+.|+.+.|.+.++.|.+. .| +-.+..-|..++
T Consensus 113 ~g~~eeAL~~l~~~-----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 113 LGDLDKSLETCVEG-----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HTCHHHHHHHHHHH-----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHH
Confidence 46666665555432 23333 6677788999999999999999999999876 56 355666666663
Q ss_pred -HhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-----C---CC-CHHHHHHHH
Q 023326 170 -DKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-----V---RP-DEDTVRRIA 237 (284)
Q Consensus 170 -~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-----~---~P-d~~ty~~ll 237 (284)
...| +..+|..+|+++.+.. | +..+-..++.++.+.|++++|.+.++.+.+.- - .| |..++..+|
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~--p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTF--P-TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTS--C-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 2234 8999999999997753 3 54444555568999999999999999876531 1 24 566775776
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
......|+ +|.+++.++++..
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHhCh--HHHHHHHHHHHhC
Confidence 66667787 7889998887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00021 Score=55.76 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=81.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..+.+.|++++|+..|+...+.. +-+...|..+-.+|.+.|++++|...|++.++.. |.+...|..+-.+|.+.|++
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCH
Confidence 34899999999999999998763 2367889999999999999999999999999864 55778899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 023326 212 NKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~ 230 (284)
++|++.|++..+. .||.
T Consensus 121 ~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 121 LKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHHHHHHHh--CCCH
Confidence 9999999998775 3554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00029 Score=50.40 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+...+...|++++|..++++..+.. |.+...|..+...|.+.|++++|++.+++..+..- .+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 35677888888999999999999999998864 45788899999999999999999999999876532 2577888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHHh
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999988754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00034 Score=59.92 Aligned_cols=128 Identities=8% Similarity=0.012 Sum_probs=97.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCC----HHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKG---QGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQ-TRSIS----KRLFS 199 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g---~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~-~~~~~----~~tyn 199 (284)
+-..+...|++++|+..|++..+.. ..+. ..+|+.+-..|...|++++|...+++..+.. ..+.+ ..+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4444777889999999999987542 1222 4589999999999999999999999887321 11211 25789
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQ-KLVLKKYL 257 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a-~~l~~~m~ 257 (284)
-+-..|.+.|++++|++.|++..+. +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999999986432 22222 56888899999999999999 77677654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00027 Score=51.57 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV--RPD----EDT 232 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~--~Pd----~~t 232 (284)
...|..+-..+...|++++|..++++.++.. |.+...|..+...|...|++++|++.|++...... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3567788888999999999999999998874 45788899999999999999999999999876532 233 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|..+...|.+.|++++|.+.|++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8889999999999999999999988753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00053 Score=51.00 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~l 236 (284)
.+...|..+-..+.+.|++++|...|+..++.. |.+...|..+-..|...|++++|+..|++..+..- -+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 467888999999999999999999999998874 55788899999999999999999999999877542 267788999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|...|++++|...|.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00072 Score=57.89 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--C--HH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--S--KR 196 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~--~~ 196 (284)
.+...+..+...|++++|++.++...+..-..+ ...+..+...+...|++++|...+++..+...... . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456669999999999999998877532211 12334455566778999999999998876433211 1 45
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEE----LGVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~----~g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|+.+-..|...|++++|++.|++..+ .+-.+ +..+|..+-..|...|++++|.+.+++..+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 799999999999999999999998762 22222 2258889999999999999999999987644
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.1e-05 Score=63.45 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----H
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----K 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..++++..+......+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 356677778899999999999999876431 0112 347888888999999999999999888654222112 5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.++..+...|...|++++|++.+++..+. +-.+ ...++..+...|.+.|++++|.+.+++..+..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 67888999999999999999999987543 2221 24478888899999999999999999887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00019 Score=63.84 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=114.8
Q ss_pred HhcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG--Q---GA-TMGTYDTLLLAF 169 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~---~p-~~~ty~~Ll~~~ 169 (284)
..|..++|...|...... ......+ ....|..+=..|...|++++|+..|++-.+.- . .+ ...+++.+-..|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 346666666666544321 1111111 23456666677999999999999999876531 1 11 246788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAF 240 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~ 240 (284)
...|++++|...+++.++..-... ...+|+.+-..|...|++++|++.|++..+. +..| ...++..+-..|
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 999999999999988875422211 2246888999999999999999999987652 4424 456788899999
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|.+.+++..+.
T Consensus 275 ~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0001 Score=58.68 Aligned_cols=136 Identities=5% Similarity=-0.149 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C-CC-C
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQ---T-RS-I 193 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~---~-~~-~ 193 (284)
...+..+-..|...|++++|+..|++..+. |..| ...+++.+-..+...|++++|...+++..+.. . .+ .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344555555689999999999999987752 2222 34678888888999999999999998876541 1 11 1
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
....++.+-..|...|++++|++.+++..+. +... -..++..+-..|...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2455788889999999999999999986532 2211 1335677888899999999999999877654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00017 Score=63.71 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----H
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----K 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.++ ..+|..+-..|...|++++|...+++..+......+ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 456677778999999999999999877531 1122 347888889999999999999999888654222112 5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|..+...|...|++++|++.|++..+. +-.+. ..++..+-..|...|++++|.+.+++..+.
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67889999999999999999999987543 22222 557888889999999999999999886643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00047 Score=55.29 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=91.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG-QGAT--------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g-~~p~--------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
+.+.|++++|+..|++..+.. -.|+ ...|..+-..|.+.|++++|...++..++. .|.+...|
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 125 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKAL 125 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHH
Confidence 899999999999999988642 1221 278888888999999999999999999886 45588889
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHhHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQK-LVLKKYLS 258 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~-~l~~~m~~ 258 (284)
..+-.+|...|++++|++.|++..+. .| +...+..+...+...|+.+++. ..+..|..
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999997765 34 5567777777777777777666 55555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00016 Score=51.38 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAF 240 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~ 240 (284)
+..+-..+.+.|++++|...+++.++.. |.+...|..+-..|...|++++|++.|++..+..-. .+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3334444445555555555555554432 224444555555555555555555555554443210 0244445555555
Q ss_pred HHc-CCHHHHHHHHHHhHHh
Q 023326 241 QRV-GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~-G~~d~a~~l~~~m~~~ 259 (284)
.+. |++++|.+.+.+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555554433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00036 Score=53.02 Aligned_cols=90 Identities=8% Similarity=-0.110 Sum_probs=74.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..+.+.|++++|+..|+...+.. +-+...|..+-..|.+.|++++|...|+..++.. |.+...|..+-..|...|++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCH
Confidence 34888999999999999888753 2367778888888899999999999999998864 55777788888999999999
Q ss_pred hHHHHHHHHHHHC
Q 023326 212 NKIIEVFADMEEL 224 (284)
Q Consensus 212 ~~A~~l~~~M~~~ 224 (284)
++|++.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00044 Score=50.30 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+-..+...|++++|..++++..+.. |.+...|..+...|...|++++|++.+++..+.. ..+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 45678888888999999999999999998864 4578889999999999999999999999987653 22577888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999887653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00028 Score=54.38 Aligned_cols=98 Identities=9% Similarity=-0.150 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+..|+...+.. +.+...|..+-.+|.+.|++++|...|++.+... |.+...|..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 3444555666778888888888888877652 2366777777778888888888888888887753 456677888888
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 023326 204 LYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|...|++++|++.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888876553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00034 Score=53.91 Aligned_cols=101 Identities=9% Similarity=0.044 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+-..+.+.|++++|...|+..+.. .|.+...|..+-..|...|++++|++.|++.....- -+...|..+-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 3456777778889999999999999999886 456888899999999999999999999999876531 2556788888
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+|...|++++|.+.|++..+...
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999998876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.3e-05 Score=70.22 Aligned_cols=128 Identities=10% Similarity=-0.035 Sum_probs=100.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-CCCHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQT-----R-SISKRLFS 199 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-----~-~~~~~tyn 199 (284)
.+...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++... . |....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 366789999999999887643 23343 47899999999999999999999888764321 1 33456799
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH-----HCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 200 RMISLYDHHDMPNKIIEVFADME-----ELGV-RPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~-----~~g~-~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-|-..|...|++++|+.++++-. ..|- .|++. +.+.+-.++...|.+++|+.++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999753 3563 46666 55556677889999999999999998754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00032 Score=53.29 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...+..+-..+.+.|++++|..+|+..+.. .|.+...|..+-..|.+.|++++|++.|++.....- -+...|..+-.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 345566667788999999999999999986 456888899999999999999999999999877632 25567788888
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+|...|++++|.+.|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999887553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00042 Score=51.93 Aligned_cols=90 Identities=13% Similarity=-0.018 Sum_probs=75.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
-..+.+.|++++|+..|++..+. .|+ ...|..+-..|.+.|++++|...++..++.. |.+...|..+...|.
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHHHHHHH
Confidence 33488899999999999998865 466 6778888888999999999999999988763 457788888999999
Q ss_pred hCCChhHHHHHHHHHHHC
Q 023326 207 HHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~ 224 (284)
..|++++|++.|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999987664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00045 Score=50.93 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+...=..+.+.|++++|+..|++..+.. +-+...|..+-..+.+.|++++|...+++.++.. |.+...|..+-..|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34445556788888999999988877653 2357788888888888899999998888888763 55777888888888
Q ss_pred HhCCChhHHHHHHHHHHHC
Q 023326 206 DHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~ 224 (284)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8889999998888887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0013 Score=48.45 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIA 237 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll 237 (284)
...|..+-..+.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++|++.|++..+.. | +...|..+-
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 3566777778899999999999999998864 5588889999999999999999999999987653 4 567888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHHh
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|...|++++|.+.|++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999999987754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=61.02 Aligned_cols=150 Identities=6% Similarity=-0.049 Sum_probs=109.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLL-LAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll-~~~~~~g~~~ 176 (284)
.|..++|...|+..-. ..| +...+..+-..|.+.|++++|+.+|+..... .|+........ ..+.+.++.+
T Consensus 130 ~g~~~~A~~~~~~al~-----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQ-----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp TTCHHHHHHHHHHHHH-----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHH-----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 4666677766665432 223 4556667777788999999999998887654 45544332222 2356677778
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+|...+++.++. .|.+...+..+-..|...|++++|++.|.+.....-. .+...+..+...|...|+.++|...+++
T Consensus 203 ~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 203 PEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 888888888775 4668888999999999999999999999998776422 2366888999999999999988888766
Q ss_pred hH
Q 023326 256 YL 257 (284)
Q Consensus 256 m~ 257 (284)
-.
T Consensus 281 al 282 (287)
T 3qou_A 281 QL 282 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00038 Score=54.08 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...|..+-..+.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 45678888888999999999999999999864 55888899999999999999999999999877632 2577899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00074 Score=54.28 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=94.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|+.. ..|+...+..+-..|.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|
T Consensus 19 ~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 19 KKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp TTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 34555555544322 25677888888888999999999999999988764 34678899999999999999999
Q ss_pred HHHHHHHHHcCCC--------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 179 ESLWNMILHTQTR--------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 179 ~~l~~~m~~~~~~--------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.+.|++..+..-. |.....|..+-..|.+.|++++|++.|++..+..
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999885422 1133778999999999999999999999987654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=50.44 Aligned_cols=95 Identities=9% Similarity=-0.044 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~~ 205 (284)
..+-..+.+.|++++|+..|++..+.. ..+...|..+-..+.+.|++++|...+++.++.. |. +...|..+...|
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHH
Confidence 344455888999999999999988763 2367788889999999999999999999998863 55 688899999999
Q ss_pred HhC-CChhHHHHHHHHHHHCC
Q 023326 206 DHH-DMPNKIIEVFADMEELG 225 (284)
Q Consensus 206 ~~~-G~~~~A~~l~~~M~~~g 225 (284)
.+. |++++|++.|++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3.3e-05 Score=59.81 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..|.+.|++++|++.|++.++.. +-+..+|..+-..|.+.|++++|...|++.++. .|.+..+|..+-..|.+.|+.
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh
Confidence 33445555555555555544431 113444444555555555555555555555443 233444455555555555555
Q ss_pred hHHHH
Q 023326 212 NKIIE 216 (284)
Q Consensus 212 ~~A~~ 216 (284)
++|.+
T Consensus 116 ~~aa~ 120 (150)
T 4ga2_A 116 DGRAK 120 (150)
T ss_dssp SSHHH
T ss_pred HHHHH
Confidence 44433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0017 Score=57.14 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=111.5
Q ss_pred HhcCCchHHHHHHHHHHHH-HccCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWT-AWETE--FP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQG--A--TMGTYDTLLLAF 169 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~-~~~~~--p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~--p--~~~ty~~Ll~~~ 169 (284)
..|..++|...++..-... ..... |. ...+..+-..|...|++++|...+++.....-. + ...+|..+-..+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 4577777877776554432 22222 22 344555667789999999999999987754221 1 246788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH-----HHHHHHHhCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFS-----RMISLYDHHDMPNKIIEVFADMEELGVRP---DEDTVRRIASAFQ 241 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn-----~lI~~~~~~G~~~~A~~l~~~M~~~g~~P---d~~ty~~ll~a~~ 241 (284)
...|++++|...+++.......+.....|. .++..+...|++++|..++++.......+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998876532221211222 23345789999999999998876543221 1335677788899
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...+++....
T Consensus 265 ~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887644
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00016 Score=57.57 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=92.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~lI~~~~~~G 209 (284)
+...|++++|.++++.+... ......++..+-..+...|++++|...+++..+.. ..+....+++.+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45689999999966665432 22356788888899999999999999998887632 22224567888999999999
Q ss_pred ChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEEL----GVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~----g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++++|++.|++..+. |-.| ....+..+-..+...|++++|...+++..+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999986543 3222 2346788888999999999999999887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0002 Score=63.81 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS----ISK 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~ 195 (284)
..+..+-..|...|++++|+..|++..+..- .++ ..+|..+-..|...|++++|...+++..+..-.. ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556677778999999999999998765311 112 3478888899999999999999998886543221 125
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+|..+...|...|++++|++.|++..+. +..+ ...+|..+...|.+.|++++|.+.+++..+.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999987543 2121 244788888999999999999999998876643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00022 Score=61.75 Aligned_cols=171 Identities=8% Similarity=-0.034 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHH------hcCCchHHHHHHHHHH-HHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 023326 86 GSGQKALNLVRIV------SELPNEKHAVYGALDK-WTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK---- 153 (284)
Q Consensus 86 ~~~~~a~~l~~~~------~~~~~~a~~vf~~l~~-~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~---- 153 (284)
+....+...+... .+..++|...|...-. ........ -...|+.+-..|.+.|++++|+..|++-.+.
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 4556666555432 3666677666655444 33332211 1457778888889999999999999886543
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 154 GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 154 g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
|-.. -..+|+.+-..|.+ |++++|...+++.++..-... ...+|+.+-..|.+.|++++|++.|++..+.-..-
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 2111 14577777788877 999999999988776532211 14568888899999999999999999987653333
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 229 D-----EDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 229 d-----~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+ ...+..+...+...|++++|...|++..
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3 1256666677777899999999998888
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00067 Score=55.14 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=94.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+-..|.+.|++++|+..|++..+.. +-+...|..+-..+...|++++|...|++.++. .|.+..+|..+-..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 4556899999999999999988763 226788999999999999999999999999986 4668888999988887766
Q ss_pred Ch--hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 210 MP--NKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 210 ~~--~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+. +.+...++.. ..|+.. .+..+-.++...|++++|...|++..+...
T Consensus 137 ~~~~~~~~~~~~~~----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 137 EQEKKKLETDYKKL----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44 3455555543 244443 333344556678999999999998876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00051 Score=60.99 Aligned_cols=162 Identities=12% Similarity=0.013 Sum_probs=113.9
Q ss_pred hcCCchHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----G-QGA-TMGTYDTLLLAFD 170 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g-~~p-~~~ty~~Ll~~~~ 170 (284)
.|..++|...|.......... ..+ ....+..+=..|...|++++|+..+++..+. + ..+ ...+++.+-..|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 455566666555443211111 000 1335556666799999999999999887643 1 112 2567888888899
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQT----RSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~----~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd~~ty~~ll~a~~~ 242 (284)
..|++++|.+.+++.++..- .+....+++.|-..|...|++++|++.|++..+. +..-...++..+-..|.+
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 99999999999988765421 1112356888889999999999999999987651 222236688888899999
Q ss_pred cCCHHHHHHHHHHhHHhc
Q 023326 243 VGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~ 260 (284)
.|+.++|...+++..+..
T Consensus 274 ~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00086 Score=57.54 Aligned_cols=131 Identities=11% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...+..+-..+.+.|++++|+..|++..+. .| +...+..|-..+.+.|++++|..++++..... |.....+....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 334445555688999999999999998876 34 56788889999999999999999999887653 42333333334
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..+.+.|+.++|++.|++..+. .| +...+..+-..|...|++++|...|.+..+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 4577889999999999887765 34 56788899999999999999999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0015 Score=53.65 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKG-QGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-RLFSRMISL 204 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~tyn~lI~~ 204 (284)
-..-..+.+.|++++|+..|+.+.+.. -.|. ...+..+-.++.+.|++++|...|+++++.+-..+.. ..|-.+-..
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 334445889999999999999998753 2222 3577778889999999999999999999875442221 133333333
Q ss_pred HH------------------hCCChhHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHH
Q 023326 205 YD------------------HHDMPNKIIEVFADMEELGVRPDED-TV-----------------RRIASAFQRVGQDDK 248 (284)
Q Consensus 205 ~~------------------~~G~~~~A~~l~~~M~~~g~~Pd~~-ty-----------------~~ll~a~~~~G~~d~ 248 (284)
|. ..|+.++|++.|++..+.- |+.. .+ ..+-..|.+.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 33 3689999999999987653 3321 11 234456889999999
Q ss_pred HHHHHHHhHHhcCC
Q 023326 249 QKLVLKKYLSKWKY 262 (284)
Q Consensus 249 a~~l~~~m~~~~~~ 262 (284)
|...|+++.+.+.-
T Consensus 166 A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 166 VVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCcC
Confidence 99999999988653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00036 Score=65.69 Aligned_cols=120 Identities=8% Similarity=-0.050 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.|++++|++.|++..+.. .-+...|..+-..+.+.|++++|.+.+++.++. .|.+...|..+-..|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999887652 225788999999999999999999999999886 45588899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|++..+.. .-+...|..+-..|.+.|++++|.+.+++..+..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999987653 2257789999999999999999999999987653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=68.27 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=93.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++.++. .|.+...|..+-..|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999988762 225889999999999999999999999999986 45688889999999999999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 214 IIEVFADMEELG-VRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 214 A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
|++.|++..+.. -.++.......+..+.+.|++++|.+++++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999987653 234444444444448888999999999874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0011 Score=53.84 Aligned_cols=108 Identities=10% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDT----------------LLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~----------------Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+.+.|++++|+..|+...+. .|+ ...|.. +-..|.+.|++++|...|++.++.. |.+.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~ 88 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PNNV 88 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCH
Confidence 377899999999999998875 343 344555 7788899999999999999999864 6688
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~ 246 (284)
..|..+-..|...|++++|++.|++..+. .| +...|..+-..|...|..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999998775 45 566777777777666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.4e-05 Score=56.17 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=67.8
Q ss_pred HcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
..|++++|+..|++..+.+. +-+...|..|-..|.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 45788899999999887641 2245678888888899999999999999998864 5578888889999999999999
Q ss_pred HHHHHHHHHHC
Q 023326 214 IIEVFADMEEL 224 (284)
Q Consensus 214 A~~l~~~M~~~ 224 (284)
|++.|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00036 Score=60.40 Aligned_cols=150 Identities=7% Similarity=-0.031 Sum_probs=102.9
Q ss_pred hcCCchHHHHHHHHHH-HHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 023326 99 SELPNEKHAVYGALDK-WTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFDK 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~-~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~~ 171 (284)
.+..++|...|+..-. +...+... -..++..+=..|.+ |++++|+..|++-.+. |-.. ...+|+.+-..|.+
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 3677777777765444 33332221 13456666677777 9999999999987653 2111 14678888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---H---HHHHHHHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---E---DTVRRIASAFQ 241 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~---~ty~~ll~a~~ 241 (284)
.|++++|...|++.++......+ ...|..+...|...|++++|+..|++.. . .|+ . .....++.++
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~- 243 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY- 243 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-
Confidence 99999999999998764322111 2357777788888899999999999988 4 442 2 2455566666
Q ss_pred HcCCHHHHHHHH
Q 023326 242 RVGQDDKQKLVL 253 (284)
Q Consensus 242 ~~G~~d~a~~l~ 253 (284)
..|+.+...++.
T Consensus 244 ~~~d~~~~~~~~ 255 (307)
T 2ifu_A 244 DEQDEEQLLRVC 255 (307)
T ss_dssp HTTCHHHHHHHT
T ss_pred HhcCHHHHHHHH
Confidence 678887776643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00054 Score=58.24 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCHHHHHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT-----MGTYDTLLLAFDKDHRADEAESLWNMILHT----QTRSISKRLFSRMIS 203 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~~~~~~tyn~lI~ 203 (284)
.+.+.|++++|+.+|++..+.. |+ ...|..+-..+...|++++|..++++..+. +..+....+|..+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4888999999999999998863 33 467888889999999999999999887543 212223567899999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGV-RPD----EDTVRRIASAFQRVGQ--------------------DDKQKLVLKKYLS 258 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~-~Pd----~~ty~~ll~a~~~~G~--------------------~d~a~~l~~~m~~ 258 (284)
.|...|++++|++.|++..+..- .++ ..++..+...|...|+ +++|.+.+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654311 122 3478888889999999 9999999887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0014 Score=61.04 Aligned_cols=132 Identities=7% Similarity=0.055 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+...+..+...+.+.|++++|..+|+...+. .|+ ...|..+...+.+.|++++|.++|+...+.. |.+...|-.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~ 395 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT 395 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHH
Confidence 4677778888888889999999999988874 454 2478888888888888999999988887753 223332322
Q ss_pred HH-HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 201 MI-SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 201 lI-~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.. -.|...|+.++|.++|++..+. .| +...|..++..+.+.|+.++|..+|++.....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 1234688999999999876654 35 46778888888888999999999999887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00023 Score=63.34 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=97.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-M----GTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSRMISL 204 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~lI~~ 204 (284)
+.+.|++++|+..|++..+.+ |+ . ..|..+-..|...|++++|...+++.++.. ..+....+|..+-..
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 889999999999999998863 33 2 578888888999999999999998876542 123345678999999
Q ss_pred HHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHhHH
Q 023326 205 YDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQ-----------------DDKQKLVLKKYLS 258 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~-----------------~d~a~~l~~~m~~ 258 (284)
|...|++++|++.|++..+. +-.| ....+..+-..|...|+ +++|.+.+++..+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999986543 2222 34478888889999999 9999998887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=48.67 Aligned_cols=91 Identities=9% Similarity=-0.055 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLYD 206 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~~ 206 (284)
..+.+.|++++|+..|+...+..- .+. ...+..+-..+.+.|++++|...++..++.+ |.+ ...+..+-..|.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH
Confidence 347788999999999999887531 111 1466677778889999999999999988864 334 566788888899
Q ss_pred hCCChhHHHHHHHHHHHC
Q 023326 207 HHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~ 224 (284)
+.|++++|++.|++....
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0013 Score=49.14 Aligned_cols=100 Identities=14% Similarity=0.027 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDT 232 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~t 232 (284)
.+...+..+-..+.+.|++++|..+|++.++.. |.+ ...|..+-..|...|++++|++.|++..+. .| +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 357788888999999999999999999998753 433 677899999999999999999999998765 34 5778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+..+-..|...|++++|.+.|++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888899999999999999999887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00028 Score=68.37 Aligned_cols=130 Identities=10% Similarity=-0.056 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|++.|++..+.. .-+...|..+-..+.+.|++++|.+.|++.++.. |.+...|..+-
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg 508 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALA 508 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 45566666777889999999999999888752 2256788888888899999999999999988863 55777788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..|.+.|++++ ++.|++..+. .| +...|..+-.+|.+.|++++|.+.|++..+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 99999999999 9999887665 33 566788888889999999999998887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00096 Score=49.83 Aligned_cols=88 Identities=7% Similarity=0.081 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SIS----KRLFSRMISLYDH 207 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~----~~tyn~lI~~~~~ 207 (284)
.|.+.|++++|+..|++.++.. +-+...|+.+-.+|.+.|++++|.+.+++.++..-. +.+ ..+|..+-..|..
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555544431 113444555555555555555555555554432111 001 1234444444555
Q ss_pred CCChhHHHHHHHHH
Q 023326 208 HDMPNKIIEVFADM 221 (284)
Q Consensus 208 ~G~~~~A~~l~~~M 221 (284)
.|++++|++.|++-
T Consensus 96 ~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 96 QNDLSLAVQWFHRS 109 (127)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0011 Score=49.55 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--VRPD----EDT 232 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~Pd----~~t 232 (284)
...+..|=..+.+.|++++|...|++.++. .|.+...|+-+-..|.+.|++++|++.|++..+.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 356677788899999999999999999886 46688999999999999999999999999876532 2222 246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|..+-.++...|++++|.+.|++-.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888999999999999999887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0016 Score=49.68 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...|..+-..+...|++++|...++..++.. |.+..+|..+...|...|++++|++.|++..+.. ..+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3567777788889999999999999998864 5578889999999999999999999999987653 235778888899
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999988653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0013 Score=50.65 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|++++|+..|...... .|+ ...+-.|-..|.+.|++++|.+.|++.++. .|.+..+|..+-..|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 55668899999988876543 332 345556777899999999999999999986 4668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHhHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLV-LKKYLS 258 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l-~~~m~~ 258 (284)
+|+..|++..+. .| +...|..+-..|.+.|+.+++.+. +++..+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999998765 45 567888899999999998876654 466554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00053 Score=50.85 Aligned_cols=87 Identities=8% Similarity=-0.036 Sum_probs=59.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777766542 124566666666677777777777777777665 34466667777777777777777
Q ss_pred HHHHHHHHHH
Q 023326 214 IIEVFADMEE 223 (284)
Q Consensus 214 A~~l~~~M~~ 223 (284)
|++.|++..+
T Consensus 104 A~~~~~~al~ 113 (121)
T 1hxi_A 104 ALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0013 Score=60.51 Aligned_cols=125 Identities=11% Similarity=0.119 Sum_probs=98.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQ-GAT-------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~-~p~-------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.|.+.|++++|+..|++.++..- .++ ...|..+-.+|.+.|++++|...+++.++.. |.+...|
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~ 354 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGL 354 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHH
Confidence 39999999999999999886421 111 5788999999999999999999999999864 5588899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHhHHhcC
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQK-LVLKKYLSKWK 261 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~-~l~~~m~~~~~ 261 (284)
..+-.+|...|++++|+..|++..+. .| +...+..+-..+.+.|+.+++. .++..|..+..
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998765 45 3447788888888999888766 46666765543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0014 Score=51.22 Aligned_cols=124 Identities=7% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCCCh-
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHDMP- 211 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G~~- 211 (284)
+...|++++|+..|+...+.. +.+...|..+-..|...|++++|...|++.++.. |.+...|..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 567788999999999887653 3367889999999999999999999999998864 4577788888888 8899998
Q ss_pred -hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 212 -NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 212 -~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++|++.|++..+..- -+...+..+...|...|++++|...|++..+...
T Consensus 97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999877632 2467788888999999999999999999886644
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00084 Score=59.08 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLF 198 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~ty 198 (284)
+...=..+.+.|++++|+..|++..+.+- .+ ...|..+-..+...|++++|...+++..+.. -.+....+|
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33344458899999999999999988632 12 3678888899999999999999998875432 122235678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGV-RPD----EDTVRRIASAFQRVGQ--------------------DDKQKLVL 253 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd----~~ty~~ll~a~~~~G~--------------------~d~a~~l~ 253 (284)
..+-..|...|++++|++.+++..+..- .++ ..++..+-..|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8899999999999999999998654311 122 4478888889999999 99999998
Q ss_pred HHhHHh
Q 023326 254 KKYLSK 259 (284)
Q Consensus 254 ~~m~~~ 259 (284)
++..+.
T Consensus 171 ~~al~~ 176 (406)
T 3sf4_A 171 EENLSL 176 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00091 Score=59.32 Aligned_cols=159 Identities=11% Similarity=-0.033 Sum_probs=108.4
Q ss_pred hcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 023326 99 SELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQ-GATMGTYDTLLLAFDK 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~-~p~~~ty~~Ll~~~~~ 171 (284)
.|..++|...|...-.. ......+ -..++..+=..|...|++++|+..|++..+. +. .-...++..+-..+.+
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 35566666665443332 1111111 1235666667788999999999999887762 33 2345678888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 023326 172 DHRADEAESLWNMILHTQTR---SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVG 244 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~---~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G 244 (284)
.|++++|...+++..+..-. +.....++.+-..|...|+ +++|+.++++. +..|+. ..+..+-..|...|
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCC
Confidence 99999999998887654211 1123336778888888888 77777777765 444443 36777888999999
Q ss_pred CHHHHHHHHHHhHHhc
Q 023326 245 QDDKQKLVLKKYLSKW 260 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~~ 260 (284)
++++|.+.+++..+-.
T Consensus 354 ~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.002 Score=47.21 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC-HHHHHHHHHH
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISK---RLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PD-EDTVRRIASA 239 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd-~~ty~~ll~a 239 (284)
+-..+.+.|++++|...|+..++..-. +. ..+..+-..|.+.|++++|++.|++.....-. +. ...+..+-..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445677899999999999999886432 33 56788889999999999999999998775321 11 5667888889
Q ss_pred HHHcCCHHHHHHHHHHhHHhcC
Q 023326 240 FQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|...|+.++|...|++..+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0011 Score=49.17 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAF 240 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~ 240 (284)
+..+-..+.+.|++++|...+++.++. .|.+...|..+-..|.+.|++++|+..|++..+. .| +...+..+-..|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 334556678899999999999999986 4668888999999999999999999999997765 34 566888888999
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0035 Score=55.46 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=104.6
Q ss_pred hcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc
Q 023326 99 SELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGATMGTYDTLLLAFDKD 172 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p~~~ty~~Ll~~~~~~ 172 (284)
.|..++|...|...-.. ......+ ...++..+=..|...|++++|++.|++..+. +......++..+-..+.+.
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 45555666555433322 1111111 1234556666788889999999999887651 2222367788888888899
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC
Q 023326 173 HRADEAESLWNMILHTQTR---SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQ 245 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~---~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~ 245 (284)
|+.++|...+++..+..-. +.....++.+-..|...|+ +++|+..+++ .+..|+.. .+..+-..|...|+
T Consensus 275 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCC
Confidence 9999999999888765332 2234456777777778888 7777777766 33344333 56677788999999
Q ss_pred HHHHHHHHHHhHH
Q 023326 246 DDKQKLVLKKYLS 258 (284)
Q Consensus 246 ~d~a~~l~~~m~~ 258 (284)
+++|.+.|++..+
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0013 Score=58.93 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=92.3
Q ss_pred HHHcCCHHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK--------------GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~--------------g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
|.+.|++++|+..|++.++. ...| +...|..+-..|.+.|++++|...+++.++. .|.+...|
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~ 310 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKAL 310 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHH
Confidence 99999999999999987761 0222 4578888889999999999999999999985 45688889
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKL 251 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~ 251 (284)
..+-.+|.+.|++++|++.|++..+. .| +...+..+-..+...++.+++.+
T Consensus 311 ~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997765 34 55566666677777777666544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0028 Score=54.16 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+..+-..+.+.|++++|+..|+...+. .| +...|..+-..|.+.|++++|...+++.++. .|.+...|..+-.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34444555688999999999999998875 34 6788888889999999999999999998875 4668888999999
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~ 223 (284)
+|.+.|++++|++.|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987644
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=57.13 Aligned_cols=134 Identities=10% Similarity=-0.037 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--CCC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TR--SIS 194 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~--~~~ 194 (284)
.+..+-..|...|++++|...+++..... -.++ ..+++.+-..+...|++++|...+++..+.. .. |..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 34455566888999999999999876531 1122 2346667777889999999999998886542 21 223
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVR--P--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~--P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...+..+-..|...|++++|.+.+++..+..-. + ...+|..+-..+...|++++|...+++....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455777888999999999999999987653221 1 2457888888899999999999999988754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00039 Score=50.91 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
..|++++|...|++.++.+.. |.+...|..+-..|.+.|++++|++.|++..+..-. +...+..+-.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 468899999999999986422 446778999999999999999999999998776322 467888889999999999999
Q ss_pred HHHHHHhHHh
Q 023326 250 KLVLKKYLSK 259 (284)
Q Consensus 250 ~~l~~~m~~~ 259 (284)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.004 Score=53.11 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRI 236 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~l 236 (284)
+...+..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++|++.+++..+. .| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567788888899999999999999999986 4558888999999999999999999999987654 44 56788888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-.+|...|++++|.+.|.+..+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0044 Score=47.74 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=77.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-------GQ---------GA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-------g~---------~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
+.+.|++++|+..|..-++. .- .| +...|..+-.+|.+.|++++|...++..++. .|.+..
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 98 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEK 98 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchH
Confidence 99999999999999987764 00 12 3467888888999999999999999999986 466888
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
.|..+-.+|...|++++|++.|++..+. .|+.
T Consensus 99 a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 99 ALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999999999999987665 4543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0014 Score=51.48 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHD 209 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G 209 (284)
-..+.+.|++++|+..|++..+.. +-+...+..+-..+.+.|++++|...++...... | +...+..+... +.+.+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHHHHhhc
Confidence 345889999999999999876542 2256788889999999999999999999887643 4 44433332211 22334
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 210 MPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...+|++.|++..+. .| +...+..+-..+...|++++|...|++..+..
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 445678888887654 45 57788889999999999999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=50.98 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+...|..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456666777777788888888888877765 3446777777788888888888888888876654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=61.62 Aligned_cols=126 Identities=12% Similarity=-0.067 Sum_probs=93.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSK-----G-QGAT-MGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----g-~~p~-~~ty~~Ll~ 167 (284)
.|..++|+.+++..-+......+|+ ..+++.+...|...|++++|+.++++.++- | -.|+ ..+|+.|-.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3566677777755544333334443 567889999999999999999999987642 2 2333 478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----CCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 168 AFDKDHRADEAESLWNMILHT-----QTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~-----~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|...|++++|+.++++-.+. |-. |....+.+.+-.++...|++++|+.+|+++++.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776432 222 323455778888999999999999999998763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.016 Score=60.01 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..++..+.+.|++++|++.|..-++.. ++....+.+..+|++.+++++...+. ..++...|..+-
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--------~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--------NGPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--------hCCCHHHHHHHH
Confidence 34444455555555555555555555433322 22222223555555555554322221 112333444555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..|-..|++++|..+|... ..|..+...|++.|+++.|.+.+.+-
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5555566666666666652 36666666777777777666666544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.018 Score=46.76 Aligned_cols=149 Identities=12% Similarity=-0.047 Sum_probs=98.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRG----QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g----~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--- 171 (284)
.+..++|...|....+ . -+...+..+=..|.. + +.++|+..|+.-.+.| +...+..|-..|..
T Consensus 31 ~~~~~~A~~~~~~a~~---~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAA---Q---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HTCHHHHHHHHHHHHH---T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGG
T ss_pred CCCHHHHHHHHHHHHH---c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4555555555554321 1 244555555445555 6 7888888888887765 45666666666665
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-
Q 023326 172 -DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV-G- 244 (284)
Q Consensus 172 -~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~-G- 244 (284)
.+++++|..+|++..+.+........+..|-..|.. .+++++|++.|++-.+.+ .+...+..|-..|... |
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTT
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 778888888888887764310125667777777777 778888888888877663 3444566666666554 3
Q ss_pred ----CHHHHHHHHHHhHHh
Q 023326 245 ----QDDKQKLVLKKYLSK 259 (284)
Q Consensus 245 ----~~d~a~~l~~~m~~~ 259 (284)
+.++|.+.|++-.+.
T Consensus 179 ~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 788888888877665
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0044 Score=48.65 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=78.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQG-A-----TM-----GTYDTLLLAFDKDHRADEAESLWNMILHT-----QTRSISKRL 197 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~-p-----~~-----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~~~~~~~t 197 (284)
+.+.|++++|+..|+.-++..-. | +. ..|+.+-.++.+.|++++|...++.-++. .+.|.+...
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A 100 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 100 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence 88999999999999987765211 1 23 38888888899999999999999888874 124656777
Q ss_pred H----HHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 023326 198 F----SRMISLYDHHDMPNKIIEVFADMEE-----LGVRPDEDTVRRIA 237 (284)
Q Consensus 198 y----n~lI~~~~~~G~~~~A~~l~~~M~~-----~g~~Pd~~ty~~ll 237 (284)
| .-.-.++...|++++|++.|++-.+ .|+.+......-.+
T Consensus 101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 101 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 8 8888899999999999999987643 56666555444444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=62.78 Aligned_cols=120 Identities=9% Similarity=-0.045 Sum_probs=101.0
Q ss_pred HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 135 RKRGQWLRVIQVAKWMLS-------KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~-------~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
...|++++|++.|++..+ .....+...|..+-..+.+.|++++|...+++.++. .|.+...|..+-..|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 678999999999999871 112335678888888999999999999999999986 35688899999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 208 HDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|++++|++.|++..+. .| +...|..+-.+|.+.|++++ .+.|++..+.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 99999999999998765 34 56678888899999999999 8888887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0069 Score=45.29 Aligned_cols=99 Identities=12% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCCH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG----QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----SISK 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.+ ....+..+-..+...|++++|...+++.++.... +...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 356667777999999999999999876531 111 1457778888889999999999999887654211 1124
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
.++..+-..|...|++++|++.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5678888999999999999999988653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.011 Score=46.94 Aligned_cols=124 Identities=11% Similarity=-0.028 Sum_probs=88.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---C-----------HHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI---S-----------KRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~---~-----------~~tyn 199 (284)
....|.+++|.+.++.-.+.. .-....+..+-..+.+.|++++|..+|++.++..-..+ . ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 445556666666554322210 11245677777788899999999999999987543311 1 26788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+-..|.+.|++++|++.+++..+.. ..+...|..+-.+|...|++++|.+.|++..+.
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 89999999999999999999987652 236778888999999999999999999988765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=57.39 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMG------------------TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~------------------ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
|.+.|++++|+..|++.++. .|+.. .|..+-..|.+.|++++|...++..++.. |.+.
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~ 264 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNP 264 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCH
T ss_pred HHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Confidence 77889999999999987754 34433 78888888999999999999999998864 5588
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASA-FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a-~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|..+-.+|...|++++|++.|++..+. .|+.. .+..|... ....+..+++.++|..|...
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88999999999999999999999986543 45433 33333333 23456667778888777644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0073 Score=46.44 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC--------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHT--------QT--------RSISKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~--------~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+..+...-..+.+.|++++|...|++.++. .- .|.+...|..+-.+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888999999999999988775 00 23345779999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 225778999999999999999999999987755
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.17 Score=46.27 Aligned_cols=127 Identities=6% Similarity=-0.094 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRKR-----GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~-----g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+-..|... ++.++|+..|+...+.| +...+..|-..|.+.| +.++|.++|+...+.+ +
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~ 362 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----E 362 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----C
Confidence 344555555556665 78888888888877765 3455566666665545 6778888888777752 5
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..|-..|.. .+++++|++.|++-.+.| +...+..|-..|.+ .++.++|.+.|++..+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5567777777777 788888888888887766 46666777777776 78888888888877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.076 Score=48.58 Aligned_cols=127 Identities=7% Similarity=0.016 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+=..|.. .+++++|+..|+.-.+.| +...+..|-..|.. .++.++|.+.|+...+.+ +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 45555555556666 678888888888877765 45566666666665 678888888888877753 5
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..|-..|.. .++.++|++.|++-.+.| +...+..|-..|.. .++.++|.+.|++..+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5667777777777 788888888888877765 55666667777765 78888888888877654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.018 Score=55.67 Aligned_cols=133 Identities=5% Similarity=0.011 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSK-G-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.|...+....+.|..+.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+..++.. |.+...|...+.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYF--ATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence 5677777788889999999999998876 3 3444555444444222 356999999999999873 447777899999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-....|+.+.|..+|+......-.+ ....|...+.--.+.|..+.+.++.++|.+.+.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999876654322 334788888888899999999999999987754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0036 Score=57.25 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCCHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR------SISKR 196 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~------~~~~~ 196 (284)
.+..+.+.|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++.+.++.... |....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345577888899999998887753 13343 468888888888889999998888877543211 32345
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+|+.|-..|...|++++|+.++++-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6888888899999999998888874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.011 Score=51.73 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---------------KRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---------------~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+...|..+-..|.+.|++++|...|++.++.. |.+ ...|..+-..|.+.|++++|++.|++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888888999999999999999998874 324 5789999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 753 226778999999999999999999999988765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0054 Score=56.08 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CC-CCCCH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTR---S---ISKRLFSRMISLYDHHDMPNKIIEVFADMEE-----LG-VRPDE 230 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~---~---~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-----~g-~~Pd~ 230 (284)
...+..+.+.|++++|..++++..+.... + ....+++.|...|...|++++|+.++++..+ .| -.|++
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34456677889999999999998865332 2 2346799999999999999999999998643 45 44665
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 231 D-TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 231 ~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
. +|+.|-..|...|++++|..++++..+-
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5 8999999999999999999998876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.078 Score=55.06 Aligned_cols=59 Identities=3% Similarity=-0.183 Sum_probs=36.1
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023326 117 AWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNM 184 (284)
Q Consensus 117 ~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~ 184 (284)
..+..++...|..+=..|...|++++|..+|... ..|..+...|.+.|++++|.+.+.+
T Consensus 1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3345555555555555566666666666666663 3566666666666666666666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0031 Score=57.75 Aligned_cols=87 Identities=5% Similarity=-0.015 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCC-CCCCHH-HHHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTR------SISKRLFSRMISLYDHHDMPNKIIEVFADME-----ELG-VRPDED-TVRRIAS 238 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g-~~Pd~~-ty~~ll~ 238 (284)
.|++++|..++++.++.... |....++|.|...|...|++++|+.++++.. ..| -.|++. +|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57889999998877653222 2234678999999999999999999999864 345 456665 7999999
Q ss_pred HHHHcCCHHHHHHHHHHhHH
Q 023326 239 AFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~ 258 (284)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.019 Score=50.01 Aligned_cols=125 Identities=7% Similarity=0.088 Sum_probs=99.1
Q ss_pred HHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 134 LRKRGQWL--RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR------ADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 134 ~~~~g~~~--~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
+.+.|.++ ++++.++.|.+... -|...|+---..+.+.+. ++++.+.++.++... |.|...|+-+-..+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll 230 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIH 230 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHH
Confidence 55667777 99999999998754 377788877666767666 889999999999874 55999999999999
Q ss_pred HhCCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 206 DHHDMPNK-IIEVFADMEELG--VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 206 ~~~G~~~~-A~~l~~~M~~~g--~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.|+..+ +.+...+..+.+ -..+...+..+.+.|.+.|+.++|.++++.+.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 99998655 445666654433 134778899999999999999999999999987644
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.013 Score=42.19 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 142 ~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+|+..|++..+.. +-+...+..+-..|...|++++|...+++.++.. |.+...|..+-..|...|++++|+..|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667777766542 2356788888888899999999999999988764 557778888999999999999999998886
Q ss_pred HHC
Q 023326 222 EEL 224 (284)
Q Consensus 222 ~~~ 224 (284)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0095 Score=42.86 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.|...+++.++. .|.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|...|+.++|...|++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466777777765 45688889999999999999999999999987653 225668888899999999999999999987
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0021 Score=45.64 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------HHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS------KRLF 198 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~------~~ty 198 (284)
..+..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|...+++.++.. |.+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 344444555889999999999999988763 2367888899999999999999999999998753 434 5556
Q ss_pred HHHHHHHHhCCChhHHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~ 220 (284)
..+-.++...|+.++|++.|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6666677777777766655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.022 Score=50.68 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHH-HHhcCCHHHHHHHHHHHHH----cCCCCCCHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSK-GQGATMGT---YDTLLLA-FDKDHRADEAESLWNMILH----TQTRSISKRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~t---y~~Ll~~-~~~~g~~~~A~~l~~~m~~----~~~~~~~~~t 197 (284)
+..+...|.+.|++++|.+.+....+. +..++..+ ...++.. +...|+.++|..++.+... .+..+.-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 456677799999999999999987653 22233322 2222332 3446889999999887753 3333323567
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..|...|-..|++++|.+++++.... +-.+. ...|..+...|...|++++|..++++....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 899999999999999999999986542 22333 347888889999999999999999877643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0036 Score=57.32 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-CCCHHHHHHHH
Q 023326 136 KRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQT-----R-SISKRLFSRMI 202 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-----~-~~~~~tyn~lI 202 (284)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++... . |....+||-|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999986642 24444 47899999999999999999999988864321 1 33456799999
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~ 222 (284)
..|...|++++|+.++++-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.028 Score=37.91 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..+..+-..+.+.|++++|...+++.++.. |.+...|..+-..|.+.|++++|++.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555555666666666666666665542 335555666666666666666666666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0088 Score=42.30 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
+...+..+-..|.+.|++++|...|++.++.. |.+...|..+-..|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888888888888764 44666788888888888888888888887543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.043 Score=42.94 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CHH-----HHHHHHHHHHhCCChhHHHHHHHHHHHC-----
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-----SKR-----LFSRMISLYDHHDMPNKIIEVFADMEEL----- 224 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-----~~~-----tyn~lI~~~~~~G~~~~A~~l~~~M~~~----- 224 (284)
..+..+-..+.+.|++++|...|++.++..-..+ +.. .|+-+-.++.+.|++++|+..+++-.+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3455555667889999999999999887532200 333 7999999999999999999999987663
Q ss_pred CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 225 GVRPDED-TV----RRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 225 g~~Pd~~-ty----~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.||.. .| ...-.++...|++++|...|++..+-
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2478654 67 78888999999999999999987643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.073 Score=47.84 Aligned_cols=134 Identities=12% Similarity=-0.049 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-------------------cCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDK-------------------DHRADEAESL 181 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~-------------------~g~~~~A~~l 181 (284)
.+...+..+-..|.+.|++++|+..|++..+. .| +..+|..|-..|.. .+..+.|...
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556667777788999999999999888765 34 34555555444322 1235566777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH-HHHHHcCCHHHHHHHHHHhHH
Q 023326 182 WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIA-SAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 182 ~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll-~a~~~~G~~d~a~~l~~~m~~ 258 (284)
++...+.. |.+..+|..+-..|...|++++|++.|++..+....|... .+..+. ..+...|+.++|...|.+..+
T Consensus 323 ~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 323 LKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77766653 3355568889999999999999999999987765443322 122222 234578999999998887664
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
-
T Consensus 401 i 401 (472)
T 4g1t_A 401 I 401 (472)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.065 Score=48.21 Aligned_cols=163 Identities=9% Similarity=0.058 Sum_probs=103.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH-HHc---cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHH
Q 023326 93 NLVRIVSELPNEKHAVYGALDKW-TAW---ETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK-----G-QGA-TMG 160 (284)
Q Consensus 93 ~l~~~~~~~~~~a~~vf~~l~~~-~~~---~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----g-~~p-~~~ 160 (284)
..+....|..++|...|+.-.+. ... ...| ..++|+.+=..|...|++++|+..|++..+. + ..+ ...
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34445568888888777654432 111 1123 4677888888888999999999988876542 1 122 345
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCC-CHHHHH
Q 023326 161 TYDTLLLAFDKD--HRADEAESLWNMILHTQTRSISKRLFSRMISL---YDHHDMPNKIIEVFADMEELGVRP-DEDTVR 234 (284)
Q Consensus 161 ty~~Ll~~~~~~--g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~---~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~ 234 (284)
+|+.+-.++.+. +++++|...|++.++. .|.+...+..+... +...|+.++|++.|++..+. .| +...+.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~ 213 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHH
Confidence 666655555543 4688999999888876 35566655555444 34567778888888876654 34 455565
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRV----GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~----G~~d~a~~l~~~m~~~ 259 (284)
.+...+... |+.++|.+++++..+.
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~ 242 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEK 242 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 555555544 5677888888877655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.049 Score=36.64 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..|.+.|++++|+..|++..+.. +-+...+..+-..+.+.|++++|...+++..+.. |.+...+..+-..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 44445556899999999999999988753 2357788889999999999999999999998864 55677777766666
Q ss_pred HhCC
Q 023326 206 DHHD 209 (284)
Q Consensus 206 ~~~G 209 (284)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.019 Score=52.95 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
.+.+.|++++|.+.+++.++. .|.+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-.+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 355789999999999999886 455788999999999999999999999999887632 25678899999999999999
Q ss_pred HHHHHHHHhHHh
Q 023326 248 KQKLVLKKYLSK 259 (284)
Q Consensus 248 ~a~~l~~~m~~~ 259 (284)
+|.+.|++..+.
T Consensus 92 eA~~~~~~al~~ 103 (477)
T 1wao_1 92 AALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.053 Score=52.44 Aligned_cols=154 Identities=6% Similarity=-0.029 Sum_probs=106.3
Q ss_pred cCCchHH-HHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC----------
Q 023326 100 ELPNEKH-AVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG---------QGAT---------- 158 (284)
Q Consensus 100 ~~~~~a~-~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g---------~~p~---------- 158 (284)
+...+|. .+|+.--. ..| +..-+-..+...-+.|++++|.++|+.+.+.. ..|+
T Consensus 357 ~~~~~a~r~il~rAi~-----~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQ-----CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp SCCTTHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 4555664 77654421 223 44445567777888999999999999988642 1142
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 159 --MGTYDTLLLAFDKDHRADEAESLWNMILHT-QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 159 --~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
...|...+...-+.|.++.|..+|....+. +.....+.+..+.|.-.+ .++.+.|.++|+...+. +.-+..-+..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 346888888888889999999999999876 322223333344444222 35699999999987765 2224555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+.-....|+.+.|..+|++.....
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 7787788999999999999877653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.018 Score=40.57 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
|.+...|..+-..|.+.|++++|++.|++..+..-. +...|..+-.+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557888999999999999999999999998776422 455888899999999999999999987764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.032 Score=49.73 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQ--------------TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~--------------~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
..|..+-..+.+.|++++|...|++.++.. ..|.+..+|+.+-..|.+.|++++|++.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 446677778899999999999999887610 23445678999999999999999999999998765
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 226 VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 226 ~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.| +...|..+-.+|...|++++|.+.|++..+.
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34 5778888999999999999999999988765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.28 Score=39.41 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH----RADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
+..++..+=..|...|++++|+..|+.-.+.| +...+..|=..|.. + +.++|..+|+...+.+ +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 34444444455778899999999999988876 45666666666766 6 8999999999987753 55567
Q ss_pred HHHHHHHHh----CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 199 SRMISLYDH----HDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 199 n~lI~~~~~----~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
..|-..|.. .+++++|+++|++-.+.|.. -+...+..|-..|.. .++.++|.+.|++-.+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 777777776 88999999999998776542 125677777777777 78899999999988765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.088 Score=46.74 Aligned_cols=128 Identities=12% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGA-T---------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK- 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p-~---------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~- 195 (284)
.+.+.|++++|++.|....+..-.. + ...+..|...|.+.|++++|.+++..+......-.+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3788999999999999988753221 1 1347889999999999999999998876532221121
Q ss_pred ---HHHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 ---RLFSRMISLYDHHDMPNKIIEVFADME----ELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ---~tyn~lI~~~~~~G~~~~A~~l~~~M~----~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+.+.+-..+...|+.++|++++++.. ..+..+. ..++..|...|...|++++|..++.+.....
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 223444444556789999999998764 3455554 4578888899999999999999999887543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.062 Score=49.12 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---------------KRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---------------~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
...|..+-..|.+.|++++|...|++.++.. |.+ ...|+-+-.+|.+.|++++|++.|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4577788888999999999999999998753 323 67899999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 224 LGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 224 ~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..- -+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 532 26778999999999999999999999988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.2 Score=37.47 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhH
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNK 213 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~ 213 (284)
++.++|++.|+.-.+.| .|+.. |=..|...+.+++|.+.|+.-.+.| +...+..|-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788888898888887 34443 4444556677888888888888763 45566777777777 789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
|++.|++-.+.| +...+..|-..|.. .++.++|.+.|++-.+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999888776 56667777777777 78899999888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.054 Score=46.51 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=85.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~ 176 (284)
.|..++|..+|+.+. ...|+-...-..-..+.+.|+|++|+..|+...+.. .|. ...+..|=.++...|+++
T Consensus 115 ~g~y~eA~~~l~~~~-----~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 115 QGNYADAMEALEAAP-----VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HTCHHHHHHHHTSSC-----CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHH
Confidence 566666666665442 234533222233336899999999999998443321 111 236677778899999999
Q ss_pred HHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 177 EAESLWNMILHTQTRSI-SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
+|...|++.......|. ....+...-.++.+.|+.++|..+|+++... .|+
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 99999999875433243 3335677778889999999999999999876 455
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.31 Score=44.25 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 126 AAAKALRILRKRG---QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD----HRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 126 ~y~~~i~~~~~~g---~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~----g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.+..+=..|.+.| +.++|++.|+.-.+.|. ++...+..|-..|... ++.++|..+|+... .| +...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHHH
Confidence 6666666677788 88888888888887763 3444444444445433 57888888888776 22 33334
Q ss_pred HHHHHH-H--HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhH
Q 023326 199 SRMISL-Y--DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG-----QDDKQKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~-~--~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G-----~~d~a~~l~~~m~ 257 (284)
..|-.. | ...|++++|++.|++-.+.| +...+..|-..|. .| +.++|.+.|++-.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 444443 3 34778888888888777666 4555555555554 44 6667766665443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=95.72 E-value=0.21 Score=46.20 Aligned_cols=125 Identities=8% Similarity=0.015 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD--TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.|...+..+.+.|.++.|..+|+.. +.. ..+...|. +.+.... .++.+.|..+|+..++.. |.+...|...|.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid 362 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3455666666788899999999988 321 12444443 3333322 347999999999999875 335556778888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-..+.|+.+.|..+|+... -....|...+.--...|+.+.+.++++++.+..
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999962 246677777777778899999999999888643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.053 Score=37.43 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
+.+.|++++|+..|+...+.. +-+.. .|..+-..|.+.|++++|...|++.++.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555555555555544431 11233 4444444445555555555555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.37 Score=45.43 Aligned_cols=115 Identities=6% Similarity=-0.028 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC-ChhHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD-MPNKIIE 216 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G-~~~~A~~ 216 (284)
+++++++++.+.+.. +-+...|+----.+.+.+ +++++.++++.+.+.+. .+...|+.---.+.+.| ..+++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHH
Confidence 899999999999764 236778888888888888 77999999999999764 48899999988889999 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHH
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRV--------------GQDDKQKLVLKKYLS 258 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~--------------G~~d~a~~l~~~m~~ 258 (284)
.++++.+.... |...|+-.-..+.+. +.++++.+.+++..+
T Consensus 166 ~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 99988765433 667777776666663 556888888776664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.083 Score=46.17 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-----------------HHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-----------------RLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-----------------~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
...+..+-..+.+.|++++|...|++.++.. |.+. ..|+.+-..|.+.|++++|++.|++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456667777888999999999999987753 3222 27888999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 222 EELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 222 ~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+. .| +...|..+-.+|...|++++|.+.|++..+.
T Consensus 257 l~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765 34 6778999999999999999999999987643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.94 Score=39.12 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-----
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRAD--EAESLWNMILHTQTRSISKRLFSRMISLYDHHDM----- 210 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~--~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~----- 210 (284)
+++++++.+++.+.+.. +-|-..|+----.+.+.|..+ ++.++++.+++.+.. |...|+.--....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~--N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK--NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccccchhh
Confidence 45556666666555432 224555555555555555555 555556666554332 55555555444445444
Q ss_pred -hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 211 -PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 211 -~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCC
Confidence 55555555555554322 555555555555555553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.074 Score=36.66 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKR-LFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
-..+.+.|++++|...+++.++.. |.+.. .|..+-..|...|++++|++.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445778899999999999999864 55777 89999999999999999999999987764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.087 Score=41.15 Aligned_cols=113 Identities=9% Similarity=-0.019 Sum_probs=83.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR----------ADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+.+++++|++.++.-.+.. +-+...|+.+=.++...++ +++|...|++.++. .|.+...|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 667788999999999888763 2266677766667776665 45899999998886 4668888999999
Q ss_pred HHHhCC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHD-----------MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G-----------~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|...| ++++|++.|++-.+. .|+...|..-+... ++|-+++-+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~ 145 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAY 145 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCccc
Confidence 998875 899999999987664 78777776655544 44455554443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.4 Score=42.65 Aligned_cols=135 Identities=4% Similarity=-0.090 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH----hcC-CHHHHHH---HHHHHH
Q 023326 121 EFPLIAAAKALRILRK--RG---QWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFD----KDH-RADEAES---LWNMIL 186 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~--~g---~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~----~~g-~~~~A~~---l~~~m~ 186 (284)
..+...|...+.+... .+ ...+|+.+|++-.+. .|+ ...|..+--+|. ..+ .-..... .+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3456677777766543 23 358999999998876 565 233333222221 111 1112122 222222
Q ss_pred HcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 187 HTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 187 ~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.....|.+..+|.++--.+...|++++|+..+++..+.. |+...|..+-..+.-.|+.++|.+.+++-.+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 223336688889888777777899999999999998885 89888888888899999999999999877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.58 E-value=0.37 Score=46.47 Aligned_cols=46 Identities=13% Similarity=-0.117 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMI 185 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m 185 (284)
..+.|++++|+++.+.+ .+...|..|-..+.+.|+++.|++.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554332 24456666666666666666666666654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=2.4 Score=37.30 Aligned_cols=121 Identities=9% Similarity=0.014 Sum_probs=92.0
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRG-QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-H-RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-g-~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...| .+++++++++.++... .-+...|+---..+.+. + +.+++.++++.+.+.. |.|...|+.---.+.+.|.
T Consensus 98 L~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 98 LTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcc
Confidence 55567 5999999999999763 33667888777777666 6 8899999999999864 4588889887777777777
Q ss_pred hh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhHH
Q 023326 211 PN--------KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ-------DDKQKLVLKKYLS 258 (284)
Q Consensus 211 ~~--------~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~-------~d~a~~l~~~m~~ 258 (284)
.+ ++++.++++.+.... |...|+---..+.+.|. ++++.+.+++...
T Consensus 175 ~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 175 LGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 77 999999999886543 77777777777777775 6777777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=2.2 Score=40.03 Aligned_cols=116 Identities=8% Similarity=-0.008 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 139 QWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHR----------ADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
.-++|++.++.+.+. .| +...|+.-=..+.+.|+ ++++.++++.+.+.. |.+..+|+.--..+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 357889999999876 34 34566655445555555 899999999999875 5588899999999999
Q ss_pred CC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHHh
Q 023326 208 HD--MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG-QDDKQKLVLKKYLSK 259 (284)
Q Consensus 208 ~G--~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~~ 259 (284)
.| +++++++.++++.+...+ |...|+.--..+.+.| ..+++.+.++++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 99 679999999999987544 7777877777788889 889898888877654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=2.5 Score=37.17 Aligned_cols=120 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC-C-C
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-D-M 210 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-G-~ 210 (284)
.+.+.-++|+++++.++.. .| +...|+.-=..+...| +++++.++++.+.... |.+..+|+.--..+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 3344567899999999876 34 4566777777777778 5999999999999864 55888899888888877 7 8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHhHHh
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDD--------KQKLVLKKYLSK 259 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d--------~a~~l~~~m~~~ 259 (284)
.++++++++++.+..-+ |...|+---..+.+.|..+ ++.+..+++.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 99999999998865322 6666665555555555555 788888888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=2.5 Score=36.86 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=89.1
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--
Q 023326 134 LRKRG--QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR-ADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-- 208 (284)
Q Consensus 134 ~~~~g--~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-- 208 (284)
+.+.| .+++++.+++.|.+.. .-|-..|+----.+...|. ++++.+.++.+++.. |.|...|+..-..+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhh
Confidence 44556 4899999999999864 3377888887777888888 689999999999875 44888888777666665
Q ss_pred ------------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHHhc
Q 023326 209 ------------DMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRV-----------GQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 209 ------------G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~-----------G~~d~a~~l~~~m~~~~ 260 (284)
+.++++++.+.+.... .| |...|+-+-..+.+. +.++++.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578889888887654 34 555555444444433 45788888888887553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.87 Score=31.69 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 157 ATMGTYDTLLLAFDKDHR---ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.|...+..+-.++...++ .++|..++++.++. .|.++.....+-..+.+.|++++|++.|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355555555555544333 68888888888875 46678888888888888999999999999887764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=93.31 E-value=1 Score=40.70 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
....+-..|...+.++++..-...+.+.-...+...+..|-..|.+.| +.++|.+.|....+.|.. +...+..|-
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg 220 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 333444456666655554444443333222223337777888888899 999999999999988743 555555666
Q ss_pred HHHHhC----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHH----DMPNKIIEVFADMEELGVRPDEDTVRRIASA-F--QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~----G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a-~--~~~G~~d~a~~l~~~m~~~ 259 (284)
..|... +++++|+++|++.. .| +...+..|-.. | ...|+.++|.+.|++..+.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 666544 69999999999987 33 33344444443 3 4589999999999887654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.27 Score=38.32 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh----------hHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP----------NKIIEVFADMEELGVRP-DEDTVRRIA 237 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~----------~~A~~l~~~M~~~g~~P-d~~ty~~ll 237 (284)
..+.+++++|.+.++.-++. .|.+...|+.+-.++...|++ ++|+..|++-.+. .| +...|..+-
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 34567789999999998886 466888888888888888765 5999999987665 45 566899999
Q ss_pred HHHHHcC-----------CHHHHHHHHHHhHHh
Q 023326 238 SAFQRVG-----------QDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G-----------~~d~a~~l~~~m~~~ 259 (284)
.+|...| ++++|.+.|++..+.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9998775 899999999988754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=4.5 Score=35.28 Aligned_cols=116 Identities=6% Similarity=-0.020 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-hhHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM-PNKIIE 216 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~-~~~A~~ 216 (284)
+++++.+++.+.... +-+..+|+----.+.+.+ +++++..+++.+.+.. |.|...|+.---.+.+.|. .+++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 689999999998753 337778887777777777 4899999999999976 4488889988888888998 599999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHHh
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRV--------------GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~--------------G~~d~a~~l~~~m~~~ 259 (284)
.++++.+.... |...|+-.-..+.+. +.++++.+.++.....
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 99999886543 666666666555554 4577777777766543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.7 Score=41.27 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--C-CCCCH------------------HHHHHHHHHHHhcCCHHHH
Q 023326 123 PLIAAAKALRILR---KRGQWLRVIQVAKWMLSK--G-QGATM------------------GTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 123 ~~~~y~~~i~~~~---~~g~~~~A~~l~~~M~~~--g-~~p~~------------------~ty~~Ll~~~~~~g~~~~A 178 (284)
|+..|..++..-. ..|+.++|.+.+++.... | +-++. .....++..+...|+.+++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444444444332 357888888888877653 3 22221 2233456667789999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADME-----ELGVRPDEDTVRRI 236 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g~~Pd~~ty~~l 236 (284)
...+..++.. .|.+...|-.+|.+|.+.|+..+|++.|++.. +.|+.|...+-...
T Consensus 191 ~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9999998875 46789999999999999999999999999864 46999988864433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.4 Score=46.23 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+=..+.+.|+++.|.++|..+.. |..|...+...|+.+...++.+.....|. |+..
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-------~~~A 742 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-------FNLA 742 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-------hHHH
Confidence 3455566666669999999999999998864 45666667778888776666665555432 5666
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~ 222 (284)
...|.+.|++++|++++.++.
T Consensus 743 ~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 743 FNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHcC
Confidence 667777888888888877653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.92 E-value=1.5 Score=33.73 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+..+.+-|.+..+.|. ++..+--.+--++++++ ++++|..+++++.+.. .| .....+=.|--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777766665 67766666777788877 7778999999998875 12 1122223334456899999999
Q ss_pred HHHHHHHHHC
Q 023326 215 IEVFADMEEL 224 (284)
Q Consensus 215 ~~l~~~M~~~ 224 (284)
.+.++...+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.66 E-value=1.7 Score=34.35 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred hcCCchHHHHHHHH---HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 023326 99 SELPNEKHAVYGAL---DKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 99 ~~~~~~a~~vf~~l---~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~ 175 (284)
+|..+.|..+-+.+ ..|..++.. ..+.|+++-|.+.|..... |..|.-.|.-.|+.
T Consensus 18 lg~l~~A~e~a~~l~~~~~Wk~Lg~~------------AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 18 YGNLDAALDEAKKLNDSITWERLIQE------------ALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp TTCHHHHHHHHHHHCCHHHHHHHHHH------------HHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHH------------HHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34444444433333 237777777 8889999999999887754 45555566677887
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+.-..+-+.-... .. ||.....+...|++++++++|.+ .|--|..+.+ ....|..+.|.++.++
T Consensus 77 e~L~kla~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~~------A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYAV------AKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHHH------HHHcCcHHHHHHHHHH
Confidence 7655444333322 22 78888888899999999999865 3433433322 2247788899999988
Q ss_pred hH
Q 023326 256 YL 257 (284)
Q Consensus 256 m~ 257 (284)
+.
T Consensus 141 ~~ 142 (177)
T 3mkq_B 141 AE 142 (177)
T ss_dssp TT
T ss_pred hC
Confidence 75
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.51 E-value=1.4 Score=33.96 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 122 FPLIAAAKALRILRKRG---QWLRVIQVAKWMLSKGQGA-T-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g---~~~~A~~l~~~M~~~g~~p-~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
++..+.-.+=-++++.+ ++++++.+|++..+.. .| + ...+=.|=-+|.+.|++++|.+.++.+.+. .|.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 55555555555666666 6668888888777764 23 1 122222333457788888888888888775 453433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=91.35 E-value=3.3 Score=30.53 Aligned_cols=86 Identities=7% Similarity=-0.057 Sum_probs=69.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH-- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~-- 207 (284)
|...+.+++|++.|+.-.+.| +...+..|=..|.. .++.++|.++|+.-.+.| +...+..|-..|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGK 107 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCC
Confidence 444566888999999988876 56777777777777 789999999999998864 45567777788888
Q ss_pred --CCChhHHHHHHHHHHHCCC
Q 023326 208 --HDMPNKIIEVFADMEELGV 226 (284)
Q Consensus 208 --~G~~~~A~~l~~~M~~~g~ 226 (284)
.+++++|++.|++-.+.|.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 8999999999999888774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.00 E-value=4.8 Score=31.73 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=71.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.-.+.|+++.|+++.+++ -+...|..|-....+.|+++-|++.|.... | |..+.=.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHH
Confidence 356789999999998877 367899999999999999999999998753 2 666666777788887
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+..++-+.-...|- ++.-...+--.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77766555444542 23444444455666666555533
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=2.8 Score=35.98 Aligned_cols=109 Identities=4% Similarity=-0.036 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC-CC
Q 023326 140 WLRVIQVAKWMLSKGQGAT---MGTYDTLLLAFDKD-----HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-DM 210 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~---~~ty~~Ll~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-G~ 210 (284)
..+|..++++.++. .|+ -..|+.|-..|.+. |+.++|+++|++-++..-. .+..++...-..+|+. |+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-HDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-TCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHhcCC
Confidence 44565656655554 566 45788888888884 9999999999999986432 1367788888999995 99
Q ss_pred hhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 211 PNKIIEVFADMEELGVR--PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~--Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+++.+.+++-...... |+....+. +.-++|.+++++..+-
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHHh
Confidence 99999999999998877 87543333 3345677777665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.41 E-value=2.3 Score=29.78 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQ-----TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~-----~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-+..|-..+.+.|+++.|...+++..+.. .......+|..|-.+|.+.|++++|+.++++...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555556666666666665554321 0112455667777777777777777777776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.13 E-value=2.2 Score=29.85 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..-+-.|-..+.+.|+++.|...|++-.+. +-.+....|..|-.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444567778889999999999999985542 11245668899999999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=90.07 E-value=11 Score=34.52 Aligned_cols=30 Identities=13% Similarity=-0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK 153 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~ 153 (284)
...+-..+..+.+.|+.++|..+|++-...
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 445556666677889999999999987766
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.73 E-value=3.4 Score=28.53 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 192 SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|.+...+..+-.++...++ .++|..+|++-.+. .| +......+-..+...|++++|...|+++.+.-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577778888888876655 79999999997765 45 55567777788999999999999999998653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.98 E-value=7.7 Score=37.79 Aligned_cols=126 Identities=9% Similarity=-0.012 Sum_probs=77.3
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc------CCCCCCHHH--
Q 023326 129 KALRILRKRGQ-WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHT------QTRSISKRL-- 197 (284)
Q Consensus 129 ~~i~~~~~~g~-~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~------~~~~~~~~t-- 197 (284)
.+++.+...|+ .+.|+.+|+++.+..-.-+......+|..+.+.+ ++ +|.+++++.++. ...+.+...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev-~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKEL-DMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 44444444556 6889999999988632212222333444333333 23 244444443321 122222211
Q ss_pred --------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 198 --------FSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 198 --------yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+.=..-+...|+++.|+++-++-.. +.|+.+ ||..|...|...|++|.|.-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11223445568999999999888544 478765 99999999999999999999999885
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=86.65 E-value=5 Score=35.59 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 156 ~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
..+..+|..+-..+...|++++|...+++.+..+ | +...|..+=..+.-.|+.++|.+.|++-... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5578888888777777899999999999999985 4 7777888888999999999999999876554 56666653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=16 Score=32.20 Aligned_cols=106 Identities=8% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCC--C-----H-------------HHHHHHHHHHHhCCChhHH
Q 023326 158 TMGTYDTLLLAFD---KDHRADEAESLWNMILHTQTRSI--S-----K-------------RLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 158 ~~~ty~~Ll~~~~---~~g~~~~A~~l~~~m~~~~~~~~--~-----~-------------~tyn~lI~~~~~~G~~~~A 214 (284)
|...|..++..-. ..|+.+.|.+.+.+....+--++ + . .....++..+...|++++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5666777665433 35788888888887766542210 1 1 1235677888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH----hcCCCc
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS----KWKYIH 264 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~----~~~~~~ 264 (284)
+..+..+... -.-+...|..+|.+|.+.|+..+|.+.|+.+.+ +.+..|
T Consensus 191 ~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 191 IAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998887654 233888999999999999999999999988754 445444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.18 E-value=6.3 Score=28.15 Aligned_cols=46 Identities=4% Similarity=0.076 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
+..+-++.+......| +..+..+.+.+|-|.+++--|+.+|+-.+.
T Consensus 28 e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555554 555555555555555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=82.46 E-value=5.4 Score=34.19 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 023326 175 ADEAESLWNMILHTQTRSI--SKRLFSRMISLYDHH-----DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV-GQD 246 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~~~~~-----G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~-G~~ 246 (284)
+..|+..+++.++. .|. +-..|.+|...|.+. |+.++|.+.|++-.+..-.-+..++...-..+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666667777765 342 356799999999995 99999999999977653322477888888889885 999
Q ss_pred HHHHHHHHHhHHh
Q 023326 247 DKQKLVLKKYLSK 259 (284)
Q Consensus 247 d~a~~l~~~m~~~ 259 (284)
+++.+++++-..-
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=82.42 E-value=10 Score=28.08 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhCCChhHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE---AESLWNMILHTQTRSISKRLF-SRMISLYDHHDMPNKII 215 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~---A~~l~~~m~~~~~~~~~~~ty-n~lI~~~~~~G~~~~A~ 215 (284)
+..+.+-|......|. |+..+--.+-.++.++..... +..+++++...+. |....-| =.|--||.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444343 444444444445555554333 6666666655421 1112222 22334666667777777
Q ss_pred HHHHHHHHC
Q 023326 216 EVFADMEEL 224 (284)
Q Consensus 216 ~l~~~M~~~ 224 (284)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.73 E-value=11 Score=26.81 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||.-+-+++...|. ..++--+-+..+-..|++++|..+.+.+ +.| |...|-+|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~p-dlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYP-DLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCG-GGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCc-hHHHHHHHHH--HhcccHHHHHHHH
Confidence 57899999999988875 3333334445567789999999887754 354 8888887765 4778888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 023326 219 ADMEELGVRPDEDTV 233 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty 233 (284)
.+|...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 8887776 3333333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.53 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.31 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.26 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.22 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.1 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.66 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.66 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.64 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.63 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.57 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.55 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.1 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.98 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.89 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.77 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.64 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 94.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 94.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 92.56 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 90.95 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 90.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 90.15 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 83.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.51 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=9.4e-06 Score=68.71 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=122.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|..... ....+...+..+-..|.+.|++++|+..|++..+.. +-+..+|..+-..+.+.|++++|
T Consensus 216 ~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 216 ARIFDRAVAAYLRALS----LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp TTCTTHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred cccHHHHHHHHHHhHH----HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 4566666666655432 233456667777788999999999999999988753 22567889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+.++...... |.+...+..+...|.+.|++++|++.|++..+. .| +...+..+-..|.+.|++++|.+.|++..
T Consensus 291 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988763 558888999999999999999999999987653 56 45678888899999999999999999877
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 367 ~l 368 (388)
T d1w3ba_ 367 RI 368 (388)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.4e-05 Score=67.54 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..+...|++++|+..|+.....+ ..+...+..+-..+.+.|++++|...|++.++. .|.+..+|..+.
T Consensus 202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 278 (388)
T d1w3ba_ 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLA 278 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHH
T ss_pred cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 35566677777888899999999998887754 235667777888888899999999999988875 455778888899
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...|++++|++.|+..... ...+...+..+...+...|++++|.+.|++..+.
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999886654 3446778888888899999999999999887653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=9.7e-05 Score=62.05 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=117.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL-AFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~-~~~~~g~~~~ 177 (284)
.+..+.++.+|+.+- ..........+...+..+.+.|..++|.++|+...+.+.. +...|..... -+...|+.+.
T Consensus 112 ~~~~~~a~~i~~~~l---~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 112 RMKYEKVHSIYNRLL---AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHH---TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred cccHHHHHHHHHHHH---HHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHH
Confidence 345555666665442 1222223456788889999999999999999998876532 2233333322 2345689999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRPD--EDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
|..+|+.+++. .|.+...|...+..+.+.|++++|..+|++-.... ..|+ ...|...+.--...|+.+.+.++++
T Consensus 188 a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999986 35578889999999999999999999999976653 5554 4578888888889999999999999
Q ss_pred HhHHhcC
Q 023326 255 KYLSKWK 261 (284)
Q Consensus 255 ~m~~~~~ 261 (284)
++.+.+.
T Consensus 266 r~~~~~~ 272 (308)
T d2onda1 266 RRFTAFR 272 (308)
T ss_dssp HHHHHTT
T ss_pred HHHHHCc
Confidence 9988765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4e-05 Score=60.30 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=100.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+...|++++|++.|+++ ..|+..+|..+=..|.+.|++++|.+.|++-++.. |.....|+-+-..|.+.|++++
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHH
Confidence 78899999999999864 35788889999999999999999999999999864 6688899999999999999999
Q ss_pred HHHHHHHHHHC------------CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 214 IIEVFADMEEL------------GV--RPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 214 A~~l~~~M~~~------------g~--~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|++.|++-... |. .++ ..++..+-.++.+.|++++|.+.+....+...
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999986542 11 112 24566677789999999999999988765443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.00028 Score=58.69 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------------------------------
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ----------------------------------------------- 155 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~----------------------------------------------- 155 (284)
+...+..+...|...|++++|++.++......-
T Consensus 86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 467777888889999999999999988654210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHH
Q 023326 156 ---GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DED 231 (284)
Q Consensus 156 ---~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ 231 (284)
..+..++..+-..+...|++++|...+++.+.. .|.+..+|..+-..|.+.|++++|++.|++..+. .| +..
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 241 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIR 241 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHH
Confidence 123455666777788899999999999998876 3557888999999999999999999999987764 45 466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.|..+-.+|.+.|++++|.+.|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999999999988765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5.5e-05 Score=63.24 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+-..+...|++++|+..|+...... +-+...|..+-..|.+.|++++|.+.|++.++. .|.+..+|..+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l 246 (323)
T d1fcha_ 170 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNL 246 (323)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHH
Confidence 456667777788999999999999999987653 225778889999999999999999999999886 46688889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-..|.+.|++++|++.|++-.+
T Consensus 247 g~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 247 GISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=5.5e-05 Score=57.29 Aligned_cols=114 Identities=8% Similarity=-0.016 Sum_probs=89.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|+..|++.++.. +-+...|..+-..|-+.|++++|...|+..++.. |.+...|..+..+|...|++++
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHHH
Confidence 899999999999999988864 3367889999999999999999999999999864 6688899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHH--HHHcCCHHHHHHH
Q 023326 214 IIEVFADMEELGVRPD-EDTVRRIASA--FQRVGQDDKQKLV 252 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd-~~ty~~ll~a--~~~~G~~d~a~~l 252 (284)
|++.|++..... |+ ...+..+-.+ ....+.++++...
T Consensus 97 A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 97 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999987764 43 3333333222 2333445555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=0.00029 Score=58.95 Aligned_cols=136 Identities=7% Similarity=0.047 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+......+.+.|++++|..+|+.+++.........|...+..+.+.|.++.|.++|...++..-. +...|-...
T Consensus 98 ~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~--~~~~~~~~a 175 (308)
T d2onda1 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAA 175 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 445566777888899999999999999987543334567999999999999999999999999876433 444454444
Q ss_pred H-HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 203 S-LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 203 ~-~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
. .+...|+.+.|..+|+.+... ..-+...+...+.-+.+.|++++|..+|++..+...
T Consensus 176 ~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 176 LMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 3 345568999999999998875 233567899999999999999999999999877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=0.00011 Score=57.09 Aligned_cols=99 Identities=8% Similarity=-0.066 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
|++..+.-.=..|.+.|++++|+..|+..++.. +-+...|+.+-.+|.+.|++++|...|+..++. .|.+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 444555544567889999999999999877663 336778888888999999999999999998864 56678889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-.+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00011 Score=52.65 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=80.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+.+|++.++.. +-+...|..+-.+|.+.|++++|...++..++.+ |.+...|..+-..|...|++++
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCHHH
Confidence 889999999999999988753 3367789999999999999999999999999864 5688889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 023326 214 IIEVFADMEELGVRPDEDT 232 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~t 232 (284)
|+..|++-.+. .|+...
T Consensus 90 A~~~~~~a~~~--~p~~~~ 106 (117)
T d1elwa_ 90 AKRTYEEGLKH--EANNPQ 106 (117)
T ss_dssp HHHHHHHHHTT--CTTCHH
T ss_pred HHHHHHHHHHh--CCCCHH
Confidence 99999997754 555433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=0.00014 Score=56.38 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRR 235 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ 235 (284)
|++..+--.=..|.+.|++++|...|++.++. .|.+...|+-+-.+|.+.|++++|+..|++..+ +.| +...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 55556666666777788888888888777765 355777777777788888888888887777643 355 4557777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHH
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
+-.+|.+.|++++|...|++..+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778888888888777776553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.91 E-value=0.00015 Score=56.39 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=81.5
Q ss_pred HHHcCCHHHHHHHHHHHHHc--C-CCCC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSK--G-QGAT------------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~--g-~~p~------------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 192 (284)
....|++++|.+.|..-+.. | +.++ ...+..+...+.+.|++++|...++.+++. .|
T Consensus 21 ~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P 98 (179)
T d2ff4a2 21 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--HP 98 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CC
Confidence 78889999999999887753 2 1111 246778888999999999999999999986 57
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHH-----HHCCCCCCHHH
Q 023326 193 ISKRLFSRMISLYDHHDMPNKIIEVFADM-----EELGVRPDEDT 232 (284)
Q Consensus 193 ~~~~tyn~lI~~~~~~G~~~~A~~l~~~M-----~~~g~~Pd~~t 232 (284)
.+...|..++.+|.+.|+.++|++.|+++ ++.|+.|...|
T Consensus 99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 79999999999999999999999999997 45799998765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00035 Score=58.97 Aligned_cols=155 Identities=4% Similarity=-0.036 Sum_probs=119.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRG-QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...++..-.. ..-+...|+..-.++.+.| ++++|+..++...+.. +-+..+|+.+-..+.+.|++++
T Consensus 56 ~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 56 DERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp TCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred CCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHH
Confidence 46667787777766432 2234556676666777776 4999999999987763 2257899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ------DDKQKL 251 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~------~d~a~~ 251 (284)
|.++++.+++. .|.+...|+.+...|.+.|++++|++.|++..+.... +...|+.+-..+.+.|. +++|.+
T Consensus 131 Al~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 131 ELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHH
Confidence 99999999986 4568999999999999999999999999999876322 56677766666666655 677888
Q ss_pred HHHHhHHhcC
Q 023326 252 VLKKYLSKWK 261 (284)
Q Consensus 252 l~~~m~~~~~ 261 (284)
.+....+...
T Consensus 208 ~~~~al~~~P 217 (315)
T d2h6fa1 208 YTLEMIKLVP 217 (315)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 8877777643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.00013 Score=51.87 Aligned_cols=84 Identities=8% Similarity=-0.008 Sum_probs=62.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+.+.|++++|+..|++..+.. | +...|..+-..+.+.|++++|...++..++. .|.+...|..+-..|...|+++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHH
Confidence 667778888888887776653 3 4667777777777788888888888777765 3556777777778888888888
Q ss_pred HHHHHHHHH
Q 023326 213 KIIEVFADM 221 (284)
Q Consensus 213 ~A~~l~~~M 221 (284)
+|++.|++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00033 Score=52.74 Aligned_cols=90 Identities=9% Similarity=0.002 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
..|.+.|++++|...|++.++.. |.+...|..+-..|...|++++|++.|++..+.. .-+...|..+..+|...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 35679999999999999999874 6689999999999999999999999999987663 22557899999999999999
Q ss_pred HHHHHHHHHhHHh
Q 023326 247 DKQKLVLKKYLSK 259 (284)
Q Consensus 247 d~a~~l~~~m~~~ 259 (284)
++|...+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00035 Score=49.91 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=80.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
+.+.+.|++++|..+|++.++. .|.+...|+.+-.+|...|++++|++.+.+.....- -+...|..+-.++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCH
Confidence 4577889999999999999986 466889999999999999999999999999887642 3777899999999999999
Q ss_pred HHHHHHHHHhHHhc
Q 023326 247 DKQKLVLKKYLSKW 260 (284)
Q Consensus 247 d~a~~l~~~m~~~~ 260 (284)
++|...|++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0016 Score=49.52 Aligned_cols=89 Identities=16% Similarity=0.005 Sum_probs=75.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG-QGAT-------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g-~~p~-------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+.+.|++++|+..|.+.++.- ..+. ..+|+.+-.+|.+.|++++|...++..++. .|.++..|.
T Consensus 23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~ 100 (170)
T d1p5qa1 23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLS 100 (170)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhH
Confidence 999999999999998876531 1111 356777778889999999999999999987 466899999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
-+-.+|...|++++|+..|++..+.
T Consensus 101 ~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 101 RRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999998775
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.0023 Score=50.99 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=88.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|+..|+..++.. +-+..+|+.+-.+|.+.|++++|...|++.++. .|.+..+|..+-..|...|++++
T Consensus 47 y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~ 123 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKL 123 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHH
Confidence 888999999999999887652 225678888888899999999999999999886 35567778888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|++.|++..+... .+......+..++.+.+..+....+.....
T Consensus 124 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 124 AQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 9999988766532 244444444455566666555555544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00017 Score=52.41 Aligned_cols=102 Identities=9% Similarity=0.031 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR---ADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..++..+...+++++|.+.|+..+..+ +.+..++..+-.++.+.++ +++|..++++++.....|....+|..|-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356677777788888888888777653 2355666666666666444 445777777776654322112356667777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHH
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDT 232 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~t 232 (284)
|.+.|++++|++.|++..+. .|+-.-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence 77888888888888877663 455443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.0015 Score=54.85 Aligned_cols=131 Identities=9% Similarity=0.061 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..+|...-..+.+.|++++|+..|+.+.+.. +-+...|+.+-..+.+.|++++|.+.++..++.. |.+...|+-+-
T Consensus 111 ~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n~~a~~~r~ 187 (315)
T d2h6fa1 111 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRY 187 (315)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--CccHHHHHHHH
Confidence 46666666667999999999999999999752 3368899999999999999999999999999974 55888898887
Q ss_pred HHHHhCCC------hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDM------PNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~------~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..+.+.|. +++|++.+.+..+. .| |...|+.+...+...| .+++.+.++...+.
T Consensus 188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 188 FVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred HHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence 77777665 57888888887666 45 6777777766655544 57888888777643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00078 Score=53.96 Aligned_cols=118 Identities=14% Similarity=0.034 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHH
Q 023326 138 GQWLRVIQVAKWMLSKGQ-GA--TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~-~p--~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A 214 (284)
++.+.|+.-+++....-- .+ ...+|..+=..|-+.|++++|...|++.++. .|.+..+|+.+-..|.+.|++++|
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHh
Confidence 345677777777765432 22 2356667777889999999999999999986 566899999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 215 IEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 215 ~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++.|++..+. .| +...+..+-..|...|++++|.+.|+...+.
T Consensus 91 ~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 91 YEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998875 34 4557888889999999999999999988754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.57 E-value=0.00044 Score=49.00 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVG 244 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G 244 (284)
-..+-+.|++++|...|++.+.. .|.+...|..+-..|.+.|++++|+..|++..+. .| +...+..+-..|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 34567899999999999999986 4668999999999999999999999999997765 34 5778888999999999
Q ss_pred CHHHHHHHHHHh
Q 023326 245 QDDKQKLVLKKY 256 (284)
Q Consensus 245 ~~d~a~~l~~~m 256 (284)
+.++|.+.|++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.55 E-value=0.002 Score=48.04 Aligned_cols=101 Identities=11% Similarity=-0.028 Sum_probs=81.1
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC-----------HHHHHHHHHHHHhcCC
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG----QGAT-----------MGTYDTLLLAFDKDHR 174 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p~-----------~~ty~~Ll~~~~~~g~ 174 (284)
+....+...|.. +.+.|++++|+..|.+.++.- ..++ ..+|+.+-.+|.+.|+
T Consensus 15 ~~a~~~~~~G~~------------~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~ 82 (153)
T d2fbna1 15 QSAFDIKEEGNE------------FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82 (153)
T ss_dssp HHHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence 444446677777 999999999999999877531 1111 3467778888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+++|.+.++..++. .|.+..+|..+..+|...|++++|+..|++-.+.
T Consensus 83 ~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 83 YPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999998886 4668899999999999999999999999987655
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.55 E-value=0.00065 Score=56.25 Aligned_cols=128 Identities=13% Similarity=-0.021 Sum_probs=84.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK----GQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SKRLFSRMIS 203 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~----g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~ 203 (284)
.|...|++++|.+.|.+..+. +-.++ ..+|+.+-..|.+.|++++|.+.++...+...... ...++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 377788888888888776542 22222 35777777888888888888888776654332211 2344556665
Q ss_pred HH-HhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 204 LY-DHHDMPNKIIEVFADMEE----LGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 204 ~~-~~~G~~~~A~~l~~~M~~----~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.| ...|++++|++.|++..+ .+..+. ..+|..+...|...|++++|...+++..+..
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence 66 346888888888876532 232222 2356777788888888888888888876653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00037 Score=50.48 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRPDE-DTVRRIAS 238 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~ 238 (284)
..|++.+...+++++|++.|+.....+ |.+..++.-+-.++.+.++ +++|+++|++.....-.|+. ..|..|-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 467888889999999999999998864 5588888888888887554 45799999998776655553 36778888
Q ss_pred HHHHcCCHHHHHHHHHHhHHh
Q 023326 239 AFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|.+.|++++|.+.|++..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.47 E-value=0.003 Score=52.05 Aligned_cols=163 Identities=9% Similarity=-0.007 Sum_probs=110.3
Q ss_pred HhcCCchHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQ-GATMGTYDTLLLAFD 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~-~p~~~ty~~Ll~~~~ 170 (284)
..+..++|...|...-++.... ..+ -..+|..+-..|.+.|++++|+..++...+. |. .....++..+...|-
T Consensus 49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (290)
T d1qqea_ 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (290)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence 4577777877776555433222 211 1356777888899999999999999975542 21 112456666666664
Q ss_pred h-cCCHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-----CCHH-HHHHHHHH
Q 023326 171 K-DHRADEAESLWNMILHTQTR----SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-----PDED-TVRRIASA 239 (284)
Q Consensus 171 ~-~g~~~~A~~l~~~m~~~~~~----~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-----Pd~~-ty~~ll~a 239 (284)
. .|++++|.+.+.+..+..-. +....+|.-+...|...|++++|+++|++.....-. .... .|...+-.
T Consensus 129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (290)
T d1qqea_ 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (290)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHH
Confidence 4 69999999999887543211 112456888999999999999999999997764321 2222 23334446
Q ss_pred HHHcCCHHHHHHHHHHhHHhc
Q 023326 240 FQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+...|+.+.|.+.+++..+..
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHhC
Confidence 668899999999998886553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.39 E-value=0.011 Score=44.49 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=90.3
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK---GQGAT-----------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~---g~~p~-----------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+.+.|++++|+..|+.-+.. ....+ ...|+.+-.+|.+.|++++|...++..++. .|.+...|.
T Consensus 25 ~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~ 102 (168)
T d1kt1a1 25 YFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLY 102 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHH
Confidence 99999999999999875531 12111 245666677788999999999999999986 466899999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCH-HHHHHHHHHhHHhc
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQD-DKQKLVLKKYLSKW 260 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~-d~a~~l~~~m~~~~ 260 (284)
.+..+|...|++++|++.|.+..+. .|+-. ....+-....+.+.. +...+++..|.++.
T Consensus 103 ~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~ 163 (168)
T d1kt1a1 103 RRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 163 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998765 45444 333333333444433 34667777776553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.32 E-value=0.0028 Score=47.84 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=70.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK--------------GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~--------------g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
+.+.|++++|+..|.+.++. -+.| +...|+.+-..+.+.|++++|...++..++. .|.+...|
T Consensus 37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~ 114 (169)
T d1ihga1 37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKAL 114 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHH
Confidence 77788888888888766431 0112 3456677777888999999999999999875 46688889
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..+-.+|.+.|++++|++.|++..+.
T Consensus 115 ~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 115 YRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0011 Score=47.96 Aligned_cols=90 Identities=7% Similarity=0.046 Sum_probs=72.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS-----KRLFSRMISLYDHH 208 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~-----~~tyn~lI~~~~~~ 208 (284)
|.+.|++++|+..|++.++.. +-+...|..+-.+|.+.|++++|...+++.++..-..+. ..+|..+-..+...
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~ 92 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE 92 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988763 236888999999999999999999999998764322111 24577777888889
Q ss_pred CChhHHHHHHHHHHHC
Q 023326 209 DMPNKIIEVFADMEEL 224 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~ 224 (284)
+++++|++.|++-...
T Consensus 93 ~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 93 EKYKDAIHFYNKSLAE 108 (128)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999875543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.10 E-value=0.00049 Score=56.80 Aligned_cols=124 Identities=7% Similarity=-0.069 Sum_probs=87.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
..+.|++++|+..|++-++.. +-|...+..|...++..|++++|...++...+. .|.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 456799999999999988762 337889999999999999999999999999886 45466666666555544444433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+..-...-...+-.++...+......+...|+.++|.+++++..+.-
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33211111111112233455555667889999999999999987663
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.02 Score=46.46 Aligned_cols=158 Identities=9% Similarity=0.031 Sum_probs=109.4
Q ss_pred cCCchHHHHHHHHHHH-HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhc
Q 023326 100 ELPNEKHAVYGALDKW-TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA--TMGTYDTLLLAFDKD 172 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~-~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p--~~~ty~~Ll~~~~~~ 172 (284)
+..+.+...+...... ...........+......+...|...++...+.+.... +..+ ....+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 4444555555444332 12222334556667777788899999999998876542 1111 123456666678889
Q ss_pred CCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCCHH-HHHHHHHHHHHcCC
Q 023326 173 HRADEAESLWNMILHTQTR--SISKRLFSRMISLYDHHDMPNKIIEVFADME----ELGVRPDED-TVRRIASAFQRVGQ 245 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~--~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~----~~g~~Pd~~-ty~~ll~a~~~~G~ 245 (284)
|+.++|...+......... +.....+..+...|...|++++|...+++.. ..+..|+.. .+..+-..|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 9999999999887654332 2234557778889999999999999999865 346666544 67777789999999
Q ss_pred HHHHHHHHHHhH
Q 023326 246 DDKQKLVLKKYL 257 (284)
Q Consensus 246 ~d~a~~l~~~m~ 257 (284)
.++|.+.+++..
T Consensus 307 ~~~A~~~l~~Al 318 (366)
T d1hz4a_ 307 KSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0074 Score=43.29 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCCC-HHHHHHH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-----VRPD-EDTVRRI 236 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-----~~Pd-~~ty~~l 236 (284)
-.+=..+.+.|++++|...|++.++. .|.+...|..+-.+|.+.|++++|++.+++..+.. ..++ ..+|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34456688999999999999999987 45688999999999999999999999999976532 1111 2477888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHH
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~ 258 (284)
-..+...+++++|.+.|.+-..
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 8889999999999999987653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.019 Score=46.63 Aligned_cols=159 Identities=9% Similarity=-0.020 Sum_probs=109.1
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFP------LIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLL 166 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~------~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll 166 (284)
..|..++|...++..-. ..|+ ...+..+-..|...|++++|+..|++..+.. -.++ ..++..+.
T Consensus 24 ~~g~~~~A~~~~~~aL~-----~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALE-----ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HTTCHHHHHHHHHHHHH-----TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHh-----hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 46777888777764422 2232 3456666677888999999999998876531 1112 34666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCHHHHHHH
Q 023326 167 LAFDKDHRADEAESLWNMILHT----QTRSI--SKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPDEDTVRRI 236 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~----~~~~~--~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd~~ty~~l 236 (284)
..+...|++..+...+...... +.... ....+..+-..|...|+++.+...+.+.... +.......+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 7788889999999888776532 11111 1234566777888999999999998887653 333445567777
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
...+...|..+.+...+.+......
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~ 203 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLG 203 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7788889999999888888776554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.013 Score=44.84 Aligned_cols=97 Identities=7% Similarity=-0.014 Sum_probs=77.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--------------------CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSI--------------------SKRLFSRMISLYDHHDMPNKIIEVFADMEELGV 226 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~--------------------~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~ 226 (284)
......|++++|.+.|.+-+..+--+. -...+..+...+.+.|++++|+..+++..+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-- 96 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-- 96 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh--
Confidence 456788999999999998877532110 1134788999999999999999999998775
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHH----hcCCCcc
Q 023326 227 RP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLS----KWKYIHF 265 (284)
Q Consensus 227 ~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~----~~~~~~~ 265 (284)
.| |...|..++.+|.+.|+.++|.+.|+++.+ +.++.+-
T Consensus 97 ~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 97 HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 34 888999999999999999999999998754 4565543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.026 Score=42.43 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-------------SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-------------~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
.+...=..+.+.|++++|...|++.++..-... -..+|+-+-.+|.+.|++++|+..+++-... .
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~ 92 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--D 92 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--c
Confidence 344444568889999999999998876533211 1245777888899999999999999987765 4
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 228 P-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 228 P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
| +...|..+-.+|...|++++|...|++..+..
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 5 77789999999999999999999999987653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.56 E-value=0.042 Score=40.39 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---CC-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CH
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRS---IS-----------KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DE 230 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~---~~-----------~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~ 230 (284)
-..+.+.|++.+|...|.+.++..... .+ ..+|+-+-..|.+.|++++|++.+++..+. .| +.
T Consensus 24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ 101 (153)
T d2fbna1 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNV 101 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--cchhh
Confidence 355678999999999999887643221 11 245777888999999999999999997765 34 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 231 DTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 231 ~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|..+..++...|++++|...|+...+.
T Consensus 102 ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 102 KALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999887754
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.52 E-value=0.04 Score=40.52 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC-----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEEL-----GVRPDE-----DTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~-----g~~Pd~-----~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|+-+-.+|...|++++|++.+++.... ...++. ..|+.+-.+|...|++|+|.+.|++..
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555553321 111211 134445556666666666666666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.47 E-value=0.019 Score=42.92 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHT--------------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~--------------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
...-..+.+.|++++|...|++.++. ...|.....|+.+-..|.+.|++++|+..+++..+.. .-
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~ 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh
Confidence 33445567888999998888766431 1123355567888889999999999999999987653 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+...|..+-.+|.+.|++++|.+.|.+..+.
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6678999999999999999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.40 E-value=0.022 Score=42.05 Aligned_cols=90 Identities=11% Similarity=-0.083 Sum_probs=68.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC---
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKG-QGAT----------MGTYDTLLLAFDKDHRADEAESLWNMILHTQ-----TRSI--- 193 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g-~~p~----------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~-----~~~~--- 193 (284)
.+.+.|++++|++.|++-++.. -.|+ ...|+.+-.+|.+.|++++|..-+++.++.. ..+.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 3677899999999999977531 1122 4688899999999999999999988876532 1111
Q ss_pred -CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 194 -SKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 194 -~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
....|+.+-.+|...|++++|++.|++..
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12346778899999999999999999854
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.16 Score=38.52 Aligned_cols=107 Identities=7% Similarity=-0.060 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-------- 191 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-------- 191 (284)
..|+...+..+=..|.+.|++++|++.|++-++.. +-+...|..+-.+|.+.|++++|...|++-+...-.
T Consensus 32 ~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~ 110 (192)
T d1hh8a_ 32 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 110 (192)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence 34566666666666999999999999999988763 235778888999999999999999999987653111
Q ss_pred ------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 192 ------SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 192 ------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
.....++..+-..|.+.|++++|.+.|.+.......
T Consensus 111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 011345666777899999999999999886655444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.64 E-value=0.053 Score=39.51 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=81.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----------DHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----------~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
|-+.+.+++|+..|+.-.+.. +-|...+..+=.+|.. .+.+++|...|++.++. .|.+..+|..+-.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 677888999999999988763 3355666666666653 34568899999998875 5668888988888
Q ss_pred HHHhCCC-----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 204 LYDHHDM-----------PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 204 ~~~~~G~-----------~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.|...|+ +++|.+.|++..+ +.|+-.+|..-|.-+ .+|.+++.+..+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k 141 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 8877653 5778888877654 467777766655554 456666666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.24 E-value=0.072 Score=43.87 Aligned_cols=145 Identities=5% Similarity=-0.055 Sum_probs=96.9
Q ss_pred CchHHHHHHHHHHHHHccCCCCHHHH-H---HHHHH-------HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 023326 102 PNEKHAVYGALDKWTAWETEFPLIAA-A---KALRI-------LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170 (284)
Q Consensus 102 ~~~a~~vf~~l~~~~~~~~~p~~~~y-~---~~i~~-------~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~ 170 (284)
.++|..+++.+- ..-|+-.+. + .++.. +...|++++|+.+|+...+.. +-+...|..+-.++.
T Consensus 45 ~~~al~~~~~~l-----~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 45 DESVLELTSQIL-----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp SHHHHHHHHHHH-----HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-----HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 356666666553 344654432 2 22222 334556889999999887653 235667777777776
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 171 KDH--RADEAESLWNMILHTQTRSISKRLFSRMI-SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 171 ~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI-~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
..+ ++++|...++..++.. |.+...|..++ ..+-..|+.++|++.+++..+.... |...|+.+-..+.+.|+.+
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHH
Confidence 665 4788999999988864 44666665554 6777789999999988877655332 6667888888888888888
Q ss_pred HHHHHHHH
Q 023326 248 KQKLVLKK 255 (284)
Q Consensus 248 ~a~~l~~~ 255 (284)
+|...+..
T Consensus 196 ~A~~~~~~ 203 (334)
T d1dcea1 196 DSGPQGRL 203 (334)
T ss_dssp CSSSCCSS
T ss_pred HHHHHHHH
Confidence 77655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=94.89 E-value=0.36 Score=35.49 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.|+.+=.+|.+.|++++|+..++..++.. +.+...|..+-.++...|++++|...|...++. .|.+..++..+-...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34445556899999999999999988753 447789999999999999999999999999875 466777776666665
Q ss_pred HhCCChh-HHHHHHHHHH
Q 023326 206 DHHDMPN-KIIEVFADME 222 (284)
Q Consensus 206 ~~~G~~~-~A~~l~~~M~ 222 (284)
.+.++.. ...++|..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 5555443 3445555553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.44 Score=38.81 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRG--QWLRVIQVAKWMLSKGQGATMGTYDTLL-LAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g--~~~~A~~l~~~M~~~g~~p~~~ty~~Ll-~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+...+...-.++...+ ++++|+..+....+.. .++...+..++ ..+-..+..++|...++..++.. |.+...|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~ 182 (334)
T d1dcea1 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWH 182 (334)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHH
T ss_pred cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHH
Confidence 3344444444455554 5899999999998763 33566555444 56667899999999999998864 55899999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+-..+.+.|++++|...+.+.... .|+ ...+...+...+..+++...+.....
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9999999999999998766643322 122 22334455667777778777766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.93 E-value=0.16 Score=41.01 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=49.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
.+.|++++|...+++-++. .|.+...+..+...||..|++++|++.|+...+. .|+.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~ 63 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEY 63 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCc
Confidence 3679999999999999986 5779999999999999999999999999998765 4543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.6 Score=30.72 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHc---C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK---G--QGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~---g--~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
.+.+.|++++|+..|++-++. . ..++ ..+|+.|-.++.+.|++++|...+++.++.
T Consensus 14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 345555555555555543321 0 1111 334555555555555555555555555553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.26 E-value=1.3 Score=36.66 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 155 QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 155 ~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
...+......++..|-..|.+++...+++..+.. .+.+...++-++..|++.+ .++.++.+.
T Consensus 95 ~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~kl~e~l~ 156 (336)
T d1b89a_ 95 IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQKMREHLE 156 (336)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 4445666678888888888888888888877643 3346677888999998875 344444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.62 Score=40.66 Aligned_cols=110 Identities=10% Similarity=-0.004 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
+..+=..+.+.|+.++|...++.-.+.. ...++..|-+.+...|++++|...|++-.+. .|.+...|+.|-..|.
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILAS 197 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 3333344667778888877666544321 1346667777888889999999999988876 4667788999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
..|+..+|+..|.+-.... .|-...+..|...+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 9999999998888755432 3455566666555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=1.3 Score=28.90 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQ-----TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRR 235 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~-----~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ 235 (284)
+-.|=..+.+.|++++|...|++-++.. ..+....+++-|-.+|.+.|++++|++.+++..+. .|+ ...++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~a~~N 85 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 3355667889999999999998776432 12223567999999999999999999999998765 464 444444
Q ss_pred H
Q 023326 236 I 236 (284)
Q Consensus 236 l 236 (284)
+
T Consensus 86 l 86 (95)
T d1tjca_ 86 L 86 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.58 E-value=1.5 Score=36.32 Aligned_cols=132 Identities=10% Similarity=0.132 Sum_probs=88.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|+.+.|..+|..+..|... +..|.+.+++++|.+++.... +..+|--+...|-+......+
T Consensus 27 ~~lye~A~~lY~~~~d~~rl------------~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 27 EKMYDAAKLLYNNVSNFGRL------------ASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp --CTTTHHHHHHHTTCHHHH------------HHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHhCCCHHHH------------HHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH
Confidence 35556666666655545444 444888888998888776442 456888888888877766553
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+....... ....-..++..|-..|.+++.+.+++..... -..+...|+-++..|++.+. + ++.+.++.
T Consensus 89 -----~i~~~~~~~-~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~---kl~e~l~~ 157 (336)
T d1b89a_ 89 -----QMCGLHIVV-HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q---KMREHLEL 157 (336)
T ss_dssp -----HHTTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---HHHHHHHH
T ss_pred -----HHHHHHhhc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---HHHHHHHh
Confidence 222333332 4444578999999999999999999976432 35677788999999998754 3 34444444
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
.
T Consensus 158 ~ 158 (336)
T d1b89a_ 158 F 158 (336)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.15 E-value=0.47 Score=34.05 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH----------DMPNKIIEVFADMEELGVRP-DEDTVRRIA 237 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~----------G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll 237 (284)
|-+.+.+++|...|+..++. .|.+..+|..+=.+|... +++++|++.|++..+. .| +..+|..+-
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 34566799999999999886 476888888777777754 4557899999887754 45 566888888
Q ss_pred HHHHHcCC-----------HHHHHHHHHHhHH
Q 023326 238 SAFQRVGQ-----------DDKQKLVLKKYLS 258 (284)
Q Consensus 238 ~a~~~~G~-----------~d~a~~l~~~m~~ 258 (284)
.+|...|. +++|.+.|++..+
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 88876653 4666666666553
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.25 E-value=5.5 Score=27.70 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=65.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRAD--EAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~--~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
.+|.-|...|+.++|.+.++++....+. ..+++..+..++-+.+.-. .+-.++..|...|..+ -..+..|+.
T Consensus 12 ~ll~EY~~~~D~~Ea~~~l~eL~~p~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is-----~~~i~~Gf~ 85 (129)
T d2nsza1 12 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT-----IDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC-----HHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCchhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHH
Confidence 4555599999999999999998643333 3567777777777766543 3577999999988775 334455554
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIASA-FQRVGQD 246 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a-~~~~G~~ 246 (284)
+ .++.+.++.-. .|+...|-.-+-+ +...|-+
T Consensus 86 ~------~l~~l~Dl~lD--vP~a~~~l~~fi~rav~d~~l 118 (129)
T d2nsza1 86 R------IYNEIPDINLD--VPHSYSVLERFVEECFQAGII 118 (129)
T ss_dssp H------HHHHHHHHHHH--STTHHHHHHHHHHHHHHTTCS
T ss_pred H------HHhhCcHHhhc--cccHHHHHHHHHHHHHHcCCC
Confidence 4 34444444322 4777665544433 3344443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.51 E-value=4.3 Score=27.06 Aligned_cols=46 Identities=4% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
+..+-++.+......| +..+-.+.+.+|-|.+|+.-|+.+|+-.+.
T Consensus 24 e~rrgmN~l~~~DlVP-eP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555566665555 555566666666666666666666666553
|