Citrus Sinensis ID: 023340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MATNSLQSLHHHSFLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHccccccccHHHccccccccccHHHcccccccccccccccHHHHHHHHccccccccccccccccccccEcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHcccEEHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHccEEEcccEEEEcccEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHccccccccccccccccccccEcccccccc
Coil and Loop (DISEMBL)
matnslqslhhhsflrrhhpdaapaaalkptnpnslsfslsnnnntttttttsantmitfsslspsttsssssssqtsttttttttttsepisFDLLHQHLQAQNFRQADEETRRLLIALAGEasekrgyvFFSEVQFIAEADLKAIDELWRQysdnkfgySVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNyrafptefiwengketpvghlpltnalRGTQLLASILnhpafegmqddddddnkqeeevskfggggdngvlktkplsksvlktdysf
Flexible Loop (DISEMBL)
MATNSLQSLHHHSFLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITFSSLSpsttsssssssqtsttttttttttsePISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVskfggggdngvlktkplsksvlktdysf
Low Complexity Region (SEG)
MATNslqslhhhsflrrhhpdaapaaalKPtnpnslsfslsnnnntttttttsantMITFsslspsttsssssssqtsttttttttttsEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGMQddddddNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF
Disordered region (IsUnstruct)
****************************************************************************************************************TRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNH************************************************
Disordered Region (DISOPRED)
****S************************************************************************************EPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE*************************************LKTDY**
Disordered Region (DISEMBL)
*************FLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITFS**************************TSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGMQ**************KFGGGGDNGVLKTKPLSKSVLKTDYSF
Disordered Region (DISPRO)
*********************AAPAAALK*TNPNSLSFSLS****T*TT**TSANTMITFSSLSP***********TSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE***********************************SV*K*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATNSLQSLHHHSFLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9LX31	265	Tetrapyrrole-binding prot	yes	no	0.636	0.679	0.6	6e-61
Q1XDT5	237	Uncharacterized protein y	N/A	no	0.505	0.603	0.355	2e-22
P51202	238	Uncharacterized protein y	N/A	no	0.445	0.529	0.370	6e-21
P72583	233	Ycf53-like protein OS=Syn	N/A	no	0.660	0.802	0.301	1e-20
O19887	237	Uncharacterized protein y	N/A	no	0.473	0.565	0.352	3e-18

>sp|Q9LX31|GUN4C_ARATH Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1

 Score =  234 bits (596), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 142/195 (72%), Gaps = 15/195 (7%)

Query: 94  FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
           FD+L  HL  QNFRQADEETRRLLI ++GEA+ KRGYVFFSEV+ I+  DL+AID LW +
Sbjct: 81  FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIK 140

Query: 154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
           +SD +FGYSVQ+KIW KV KDFT FF++V WMK LDTE+ QYNYRAFP EF WE   ETP
Sbjct: 141 HSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETP 200

Query: 214 VGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLS 273
           +GHLPLTNALRGTQLL  +L+HPAF      DD+  + E+E+++       GV   K  +
Sbjct: 201 LGHLPLTNALRGTQLLKCVLSHPAFATA---DDNSGETEDELNR-------GVAVAKEQA 250

Query: 274 -----KSVLKTDYSF 283
                K V KT+YSF
Sbjct: 251 GVGADKRVFKTNYSF 265

Regulates chlorophyll synthesis and plastid-to-nucleus signal transduction by binding both the product and the substrate of Mg-chelatase, an enzyme that produces magnesium-protoporphyrin IX (Mg-Proto). Activates also Mg-chelatase.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1XDT5|YCF53_PORYE Uncharacterized protein ycf53 OS=Porphyra yezoensis GN=ycf53 PE=3 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 94/152 (61%), Gaps = 9/152 (5%)

Query: 88  TSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAI 147
           +++ +++  L   L  ++  +AD+ T++ LI LAG  ++ R +++F++++ I   DL+ I
Sbjct: 93  SAQQMNYKDLQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTI 152

Query: 148 DELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWE 207
           D+LW  +S  KFG  VQ++IW  V KD+  F+ ++GW      E+++   R +P EF W 
Sbjct: 153 DKLWHTHSKGKFGLFVQRQIWLSVGKDWGKFWQKIGW------EVDRIPCR-YPEEFQWN 205

Query: 208 NGKETPVGHLPLTNALRGTQLLASILNHPAFE 239
           +    P GHLPL N LRG Q+L+++  H A+E
Sbjct: 206 S--HGPRGHLPLFNQLRGVQVLSALFTHKAWE 235

Porphyra yezoensis (taxid: 2788)

>sp|P51202|YCF53_PORPU Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3 SV=1

 Score =  101 bits (252), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 84/135 (62%), Gaps = 9/135 (6%)

Query: 105 NFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQ 164
           N   AD+ T++ LI LAG   + R +++F++++ I   DL+ ID+LW  +S  KFG+ VQ
Sbjct: 111 NLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQ 170

Query: 165 KKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALR 224
           ++IW  + K++  F+ ++GW      E+ +   R +P EF W +    P GHLPL N LR
Sbjct: 171 RQIWLALEKNWEQFWYKIGW------EINRVPCR-YPEEFHWNST--GPKGHLPLCNQLR 221

Query: 225 GTQLLASILNHPAFE 239
           G Q+L+++ +H A++
Sbjct: 222 GVQVLSALFSHKAWD 236

Porphyra purpurea (taxid: 2787)

>sp|P72583|YC53L_SYNY3 Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0558 PE=1 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 40  LSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQ 99
           L+ N           N   T  +L   T ++     Q +  T      +++ I +  L +
Sbjct: 42  LAKNVPLEKPVLAVGNVYQTLRNLEQETITTQL---QRNYPTGIFPLQSAQGIDYLPLQE 98

Query: 100 HLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKF 159
            L +Q+F  ADE TR  L  LAG  + +R +++F+EV+     DL  I+ LW  +S+  F
Sbjct: 99  ALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNF 158

Query: 160 GYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 219
           G+SVQ+++W    K+FT  + ++GW K  +       +  +P  F W+     P GHLPL
Sbjct: 159 GFSVQRRLWLASGKEFTKLWPKIGW-KSGNV------WTRWPKGFTWD--LSAPQGHLPL 209

Query: 220 TNALRGTQLLASILNHPAF 238
            N LRG ++  S+  HP +
Sbjct: 210 LNQLRGVRVAESLYRHPVW 228

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|O19887|YCF53_CYACA Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 8/142 (5%)

Query: 94  FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
           ++ L   L A NF +A++ T+++L+ LAGE S++R +++F++V  I    +  ++ LW  
Sbjct: 102 YETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWEL 161

Query: 154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
           YS   FG+S+QK+IW  VNK++  F+ ++GW+      ++      +P EF+W      P
Sbjct: 162 YSQGNFGFSIQKRIWISVNKNWKKFWKKIGWINSNSKWLK------YPGEFMW--AVNAP 213

Query: 214 VGHLPLTNALRGTQLLASILNH 235
            GHLPL N LRG  +L  I ++
Sbjct: 214 PGHLPLFNQLRGVYVLEFIFDY 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.125    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,093,204
Number of Sequences: 539616
Number of extensions: 4401542
Number of successful extensions: 97428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 413
Number of HSP's that attempted gapping in prelim test: 39920
Number of HSP's gapped (non-prelim): 30670
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

Cyanidium caldarium (taxid: 2771)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224093148	261	predicted protein [Populus trichocarpa]	0.893	0.969	0.572	1e-77
255585503	262	Tetrapyrrole-binding protein, chloroplas	0.915	0.988	0.594	2e-77
224133134	263	predicted protein [Populus trichocarpa]	0.915	0.984	0.574	4e-75
425856440	260	tetrapyrrole-binding protein, partial [G	0.646	0.703	0.685	1e-74
225433870	268	PREDICTED: tetrapyrrole-binding protein,	0.667	0.705	0.688	1e-73
297743775	223	unnamed protein product [Vitis vinifera]	0.667	0.847	0.688	3e-73
356538901	269	PREDICTED: tetrapyrrole-binding protein,	0.918	0.966	0.536	3e-70
388515087	272	unknown [Lotus japonicus]	0.904	0.941	0.545	9e-70
356545480	266	PREDICTED: tetrapyrrole-binding protein,	0.901	0.958	0.512	2e-65
449446253	260	PREDICTED: tetrapyrrole-binding protein,	0.653	0.711	0.644	1e-63

>gi|224093148|ref|XP_002309808.1| predicted protein [Populus trichocarpa] gi|222852711|gb|EEE90258.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/288 (57%), Positives = 199/288 (69%), Gaps = 35/288 (12%)

Query: 2   ATNSLQSLHHHSFLRRHHP-DAAPAAAL--KPTNPNSLSFSLSNNNNTTTTTTTSANTMI 58
           ATNSLQSLHHH  L +  P D +P ++L  KPT                T+ +T+ N  +
Sbjct: 3   ATNSLQSLHHHHSLLKFLPSDTSPPSSLFLKPT----------------TSISTATNISL 46

Query: 59  TFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLI 118
              SLS STT+++ S S      T+T  +TS+  S +LL QHL  QNFR+ADEETRRLLI
Sbjct: 47  ---SLSISTTTTAYSIS----PATSTAPSTSKTFSLNLLQQHLSNQNFREADEETRRLLI 99

Query: 119 ALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIW-EKVNKDFTN 177
            LAGEA++KRGYVFFSEVQFI E DLK IDELW++YS+NKFGYSVQK+IW +K NKDFT 
Sbjct: 100 VLAGEAAQKRGYVFFSEVQFIPEQDLKDIDELWKKYSNNKFGYSVQKRIWRQKGNKDFTK 159

Query: 178 FFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPA 237
           FFI+VGWMKKLDTE+EQYNYR+FP EFIWE   +TP GHLPLTNALRG QLL +IL+HPA
Sbjct: 160 FFIKVGWMKKLDTEVEQYNYRSFPNEFIWELNDDTPEGHLPLTNALRGIQLLKNILSHPA 219

Query: 238 FEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTK--PLSKSVLKTDYSF 283
           FE       D   +E++V     GG  G+  +   PLS  V KTDYSF
Sbjct: 220 FEV------DGEVEEDKVEGNENGGLKGLRDSSKPPLSNRVFKTDYSF 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585503|ref|XP_002533443.1| Tetrapyrrole-binding protein, chloroplast precursor, putative [Ricinus communis] gi|223526705|gb|EEF28939.1| Tetrapyrrole-binding protein, chloroplast precursor, putative [Ricinus communis]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/286 (59%), Positives = 211/286 (73%), Gaps = 27/286 (9%)

Query: 1   MATNSLQSLHH--HSFLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMI 58
           MATNSLQSLHH  HS L+  H D         T P+SL               T+ NT +
Sbjct: 1   MATNSLQSLHHNHHSLLKLQHSDT--------TTPSSLFLK-----------PTTTNTSL 41

Query: 59  TFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLI 118
           + S  S STT+ +++++ + + TT+TT +TS+  S DLL QHL AQNFRQADEETRRLLI
Sbjct: 42  SLSISSSSTTTPTTTTTFSISPTTSTTPSTSQTFSLDLLQQHLSAQNFRQADEETRRLLI 101

Query: 119 ALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIW-EKVNKDFTN 177
            LAGEA++KRGYVFFSEVQFI+E DLKAIDELW++YS+NKFGYS+QK+IW +K NKDFT 
Sbjct: 102 VLAGEATQKRGYVFFSEVQFISENDLKAIDELWKKYSNNKFGYSIQKRIWQQKANKDFTK 161

Query: 178 FFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPA 237
           FFI+VGWMKKLDTE+EQYNYR+FPTEFIWE   E P GHLPLTNALRGTQLL  IL HPA
Sbjct: 162 FFIKVGWMKKLDTEVEQYNYRSFPTEFIWELNDEIPEGHLPLTNALRGTQLLNCILTHPA 221

Query: 238 FEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF 283
           F+  ++ +++++K ++     G GG  G++ +KPLSKSV K DYSF
Sbjct: 222 FDVEEEGEEEEDKIDD-----GNGGLKGLMGSKPLSKSVFKPDYSF 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133134|ref|XP_002327969.1| predicted protein [Populus trichocarpa] gi|222837378|gb|EEE75757.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/287 (57%), Positives = 201/287 (70%), Gaps = 28/287 (9%)

Query: 1   MATNSLQSL-HHHSFLRRHHPDAAPAAAL--KPTNPNSLSFSLSNNNNTTTTTTTSANTM 57
           MAT+SL+SL HHHS L+ H  D  P ++L  KPT                  T+ S NT 
Sbjct: 1   MATSSLRSLNHHHSLLKFHPSDTTPPSSLFLKPT------------------TSISVNTD 42

Query: 58  ITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLL 117
              +SLS S +S + +++ + + TT+TT +TS+  S DLL QHL  QNFR+ADEETRRLL
Sbjct: 43  ---TSLSLSISSPTITTAYSVSPTTSTTPSTSKTDSLDLLQQHLSNQNFREADEETRRLL 99

Query: 118 IALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWE-KVNKDFT 176
           I LAGEA++ RGYVFFSEVQFI+E DLK IDELW+ +S+NKFGYSVQK+IW+ K NKDFT
Sbjct: 100 IVLAGEAAQTRGYVFFSEVQFISEEDLKDIDELWKNHSNNKFGYSVQKRIWQLKANKDFT 159

Query: 177 NFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHP 236
            FFI+VGWMKKLDTE++QYNYRAFP EF+W+    TP GHLPLTNALRGTQLL +ILNHP
Sbjct: 160 KFFIKVGWMKKLDTEVQQYNYRAFPNEFVWDLNDGTPEGHLPLTNALRGTQLLKNILNHP 219

Query: 237 AFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF 283
           AFE    + + D  +  E     G  D+  L   PLSK VLKTDYSF
Sbjct: 220 AFEVDIAEGEGDKVEGNENGGLKGLRDSSKL---PLSKRVLKTDYSF 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|425856440|gb|AFX97760.1| tetrapyrrole-binding protein, partial [Galium verum f. pusillum]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 160/197 (81%), Gaps = 14/197 (7%)

Query: 91  PISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDEL 150
           P +FD+L QHL +QNFR+ADEETRRLLIALAGEA+ KRGYVFF EV+FI E+DLKAIDEL
Sbjct: 74  PTTFDVLEQHLSSQNFREADEETRRLLIALAGEAAVKRGYVFFPEVKFIPESDLKAIDEL 133

Query: 151 WRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGK 210
           WR+YSD KFGYSVQ+K+W+K+N +F+ FFI+VGWMKKLDTE++QYNYRAFP+EFIWEN +
Sbjct: 134 WRKYSDGKFGYSVQRKVWKKLNCNFSTFFIKVGWMKKLDTEVQQYNYRAFPSEFIWENSE 193

Query: 211 ETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNG----V 266
           ETPVGHLPLTNALRGTQLL  IL+HPAFE            EEE ++F G  + G    V
Sbjct: 194 ETPVGHLPLTNALRGTQLLNCILSHPAFE----------TGEEEEAQFAGAKEEGRLNNV 243

Query: 267 LKTKPLSKSVLKTDYSF 283
            K  PLSK ++KTDYSF
Sbjct: 244 TKGLPLSKGLMKTDYSF 260

Source: Galium verum f. pusillum

Species: Galium verum

Genus: Galium

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433870|ref|XP_002265252.1| PREDICTED: tetrapyrrole-binding protein, chloroplastic [Vitis vinifera] gi|147779401|emb|CAN76796.1| hypothetical protein VITISV_030118 [Vitis vinifera]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 166/196 (84%), Gaps = 7/196 (3%)

Query: 90  EPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDE 149
           + IS+D+L QHL ++N+RQADEETRRLLI LAGEA+ KRGYVFFSEVQFI EADLKAIDE
Sbjct: 78  QAISYDVLQQHLSSKNYRQADEETRRLLIVLAGEAAVKRGYVFFSEVQFIPEADLKAIDE 137

Query: 150 LWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENG 209
           LWRQ+S+NKFGYSVQ++IWEKVNKDF+ FF++VGWMKKLDTE+EQYNYRAFPTEF+WE  
Sbjct: 138 LWRQHSNNKFGYSVQRRIWEKVNKDFSRFFLKVGWMKKLDTEVEQYNYRAFPTEFMWELT 197

Query: 210 KETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLK- 268
            +TP GHLPLTNALRGTQLL  +L HPAF+G ++++++  +++  V+     G  GVL+ 
Sbjct: 198 DDTPEGHLPLTNALRGTQLLNCLLGHPAFQGNEEEEEEVAEEKGSVN-----GGLGVLRD 252

Query: 269 -TKPLSKSVLKTDYSF 283
            +KPLSKSV K DYSF
Sbjct: 253 GSKPLSKSVFKPDYSF 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743775|emb|CBI36658.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 166/196 (84%), Gaps = 7/196 (3%)

Query: 90  EPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDE 149
           + IS+D+L QHL ++N+RQADEETRRLLI LAGEA+ KRGYVFFSEVQFI EADLKAIDE
Sbjct: 33  QAISYDVLQQHLSSKNYRQADEETRRLLIVLAGEAAVKRGYVFFSEVQFIPEADLKAIDE 92

Query: 150 LWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENG 209
           LWRQ+S+NKFGYSVQ++IWEKVNKDF+ FF++VGWMKKLDTE+EQYNYRAFPTEF+WE  
Sbjct: 93  LWRQHSNNKFGYSVQRRIWEKVNKDFSRFFLKVGWMKKLDTEVEQYNYRAFPTEFMWELT 152

Query: 210 KETPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLK- 268
            +TP GHLPLTNALRGTQLL  +L HPAF+G ++++++  +++  V+     G  GVL+ 
Sbjct: 153 DDTPEGHLPLTNALRGTQLLNCLLGHPAFQGNEEEEEEVAEEKGSVN-----GGLGVLRD 207

Query: 269 -TKPLSKSVLKTDYSF 283
            +KPLSKSV K DYSF
Sbjct: 208 GSKPLSKSVFKPDYSF 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538901|ref|XP_003537939.1| PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Glycine max]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/287 (53%), Positives = 184/287 (64%), Gaps = 27/287 (9%)

Query: 1   MATNSLQ---SLHHHSFLRRHHP-DAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANT 56
           MATNSL      HHHS  +RHHP D  P  +L   +P               T     N 
Sbjct: 6   MATNSLHYSIQHHHHSLTKRHHPSDTPPHTSLFLKHP---------------TPPIHPNI 50

Query: 57  MITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRL 116
            I       S T S+S  + + + TT+++TT+    SFDLL  HL  +NF  ADEETRRL
Sbjct: 51  TI-------SHTPSNSHITYSLSQTTSSSTTSPTTPSFDLLRHHLSNKNFELADEETRRL 103

Query: 117 LIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFT 176
           LI LAGEA++KRGYVFFSEV+FI+E  L+AID LWR+YS  KFGYSVQKK+ EK N DFT
Sbjct: 104 LIVLAGEAAQKRGYVFFSEVKFISEGGLRAIDSLWREYSGGKFGYSVQKKLLEKANGDFT 163

Query: 177 NFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHP 236
            FFI+VGWMKKLDTEMEQYNYR+FPTEFIWE   +TP GHLPLTNALRGTQLL ++L HP
Sbjct: 164 KFFIKVGWMKKLDTEMEQYNYRSFPTEFIWELNDDTPEGHLPLTNALRGTQLLNNVLKHP 223

Query: 237 AFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF 283
           AF+ + DD ++  K  E     G     G+      SK + KTDYSF
Sbjct: 224 AFD-VVDDKEEKEKDGENKENGGAISATGLKDNGSSSKRIFKTDYSF 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515087|gb|AFK45605.1| unknown [Lotus japonicus]

 Score =  269 bits (688), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 163/299 (54%), Positives = 200/299 (66%), Gaps = 43/299 (14%)

Query: 1   MATNSLQSLHHHSFLRRHHPDAAPAAA-----LKPTNPNSLSFSLSNNNNTTTTTTTSAN 55
           MATN L S+HH      HH ++ P+       LKPTN  + S +LSN             
Sbjct: 1   MATNYLHSIHHSLIKHHHHSESPPSTLSASLFLKPTNTKTSSITLSN------------- 47

Query: 56  TMITFSSLSPSTTSSSS-SSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETR 114
                 SL PS TS+SS + S + TT++TT +TTS+  S DLL + L A+NFR+AD+ETR
Sbjct: 48  ------SLLPSPTSNSSVTFSVSQTTSSTTPSTTSKSTSLDLLRELLSARNFREADDETR 101

Query: 115 RLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKD 174
           RLLIALAGE + KRGYVFFSEVQFI+E DLKAIDELWR++SDN+FGYSVQK+I+EKV+KD
Sbjct: 102 RLLIALAGEPAIKRGYVFFSEVQFISETDLKAIDELWREHSDNRFGYSVQKRIFEKVDKD 161

Query: 175 FTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILN 234
           FTNFFI+VGWMKKLDTEMEQ+NYR+FPTEFIWE   +TP GHLPLTNALRGT+LL +I  
Sbjct: 162 FTNFFIKVGWMKKLDTEMEQFNYRSFPTEFIWELNDDTPEGHLPLTNALRGTRLLGNIFT 221

Query: 235 HPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVL----------KTKPLSKSVLKTDYSF 283
           HPAF+ +++ +  D          G    NG L            KPL +   K DYSF
Sbjct: 222 HPAFDVVEEQESGD--------AVGDNKGNGALTELKDNTSSSTKKPLVQKAFKPDYSF 272

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545480|ref|XP_003541170.1| PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Glycine max]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 191/289 (66%), Gaps = 34/289 (11%)

Query: 1   MATNSLQ-SLHHH--SFLRRHHPDAAPAAA---LKPTNPNSLSFSLSNNNNTTTTTTTSA 54
           MATNSL  S+ HH  S  +RHHP   P      LKP  P          ++  T + T +
Sbjct: 6   MATNSLHYSIQHHQCSLTKRHHPSDTPPPTSLFLKPPTPPI--------HHNITLSHTPS 57

Query: 55  NTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETR 114
           N+ IT+S    + +S++S ++                 SFDLL  HL   NF+ ADEETR
Sbjct: 58  NSYITYSISQTTPSSTTSQTTP----------------SFDLLRHHLSTNNFQLADEETR 101

Query: 115 RLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKD 174
           RLLI LAGEA++KRGYVFFSEV+FI+E+ L+AID LWR++S  KFGYSVQKK+ EK N D
Sbjct: 102 RLLIVLAGEAAQKRGYVFFSEVKFISESALRAIDSLWREHSGGKFGYSVQKKLLEKANGD 161

Query: 175 FTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILN 234
           FT FFI++GWMKKLDTEMEQYNYR+FPTEFIWE   +TP GHLPLTNALRGTQLL ++L 
Sbjct: 162 FTKFFIKLGWMKKLDTEMEQYNYRSFPTEFIWELNDDTPEGHLPLTNALRGTQLLNNVLK 221

Query: 235 HPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF 283
           HPAF+ + D +++++ + ++    G   DNG   +K L + + K DYSF
Sbjct: 222 HPAFDVVDDKEEEEDGENKDN---GAITDNGS-SSKTLGQRIFKPDYSF 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446253|ref|XP_004140886.1| PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Cucumis sativus] gi|449499459|ref|XP_004160823.1| PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/194 (64%), Positives = 153/194 (78%), Gaps = 9/194 (4%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           ISFD L + L A++FRQADEETRRLLIALAGE + KRGYV+FSEVQFIA  DLKAID+LW
Sbjct: 74  ISFDELDRLLGAKDFRQADEETRRLLIALAGEGALKRGYVYFSEVQFIAAEDLKAIDDLW 133

Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
           +++SD KFGYSVQK+I+EKVNKDFT  F+++GWMKKLDTE+EQYNYRAFPTEFIWE  ++
Sbjct: 134 QKHSDGKFGYSVQKRIFEKVNKDFTKLFMKLGWMKKLDTEIEQYNYRAFPTEFIWELTED 193

Query: 212 TPVGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKT-- 269
           TP GHLPLTNALRGT+L+++ILNHPAF            +E+   K  G  +NG LK   
Sbjct: 194 TPEGHLPLTNALRGTRLMSNILNHPAFGEEA-------IEEKGEEKIAGVVENGGLKKGL 246

Query: 270 KPLSKSVLKTDYSF 283
           K +++ + K DYSF
Sbjct: 247 KSITERLFKRDYSF 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2081207	265	GUN4 "GENOMES UNCOUPLED 4" [Ar	0.653	0.698	0.594	3.4e-54
UNIPROTKB|P74162	214	sll1380 "Sll1380 protein" [Syn	0.332	0.439	0.323	3.2e-08

TAIR|locus:2081207 GUN4 "GENOMES UNCOUPLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 113/190 (59%), Positives = 136/190 (71%)

Query:    94 FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
             FD+L  HL  QNFRQADEETRRLLI ++GEA+ KRGYVFFSEV+ I+  DL+AID LW +
Sbjct:    81 FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIK 140

Query:   154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
             +SD +FGYSVQ+KIW KV KDFT FF++V WMK LDTE+ QYNYRAFP EF WE   ETP
Sbjct:   141 HSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETP 200

Query:   214 VGHLPLTNALRGTQLLASILNHPAFEGMQXXXXXXNKQEEEVSKFGGGGDNGVLKTKPLS 273
             +GHLPLTNALRGTQLL  +L+HPAF           + E+E+++  G             
Sbjct:   201 LGHLPLTNALRGTQLLKCVLSHPAFA---TADDNSGETEDELNR--GVAVAKEQAGVGAD 255

Query:   274 KSVLKTDYSF 283
             K V KT+YSF
Sbjct:   256 KRVFKTNYSF 265

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP

GO:0019899 "enzyme binding" evidence=IPI

GO:0043085 "positive regulation of catalytic activity" evidence=TAS

GO:0046906 "tetrapyrrole binding" evidence=IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P74162 sll1380 "Sll1380 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 136 (52.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    92 ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
             ++F  L   L +Q F QA+E TRRLL+A      +  G++    ++ I   DLK ID+LW
Sbjct:    48 LNFQPLETALASQQFSQANEITRRLLLAATNRTLQ--GWLTTDTIEQIPCQDLKTIDQLW 105

Query:   152 RQYSDNKFGYSVQKKIWEKVN---------KDFTNFFIRVGWMKK 187
              Q+S+N+FG++ Q + +             + +  F  R+GW K+
Sbjct:   106 LQHSNNRFGFTPQLEAFLATGNRPGRLMSPESYDQFGDRIGWRKE 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       198   0.00083  111 3  11 22  0.49    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.00u 0.18s 19.18t   Elapsed:  00:00:01
  Total cpu time:  19.00u 0.18s 19.18t   Elapsed:  00:00:01
  Start:  Mon May 20 21:54:18 2013   End:  Mon May 20 21:54:19 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LX31	GUN4C_ARATH	No assigned EC number	0.6	0.6360	0.6792	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam05419	132	pfam05419, GUN4, GUN4-like	7e-48
pfam01456	143	pfam01456, Mucin, Mucin-like glycoprotein	2e-04
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.001
pfam07655	95	pfam07655, Secretin_N_2, Secretin N-terminal domai	0.002
COG3889	872	COG3889, COG3889, Predicted solute binding protein	0.004

>gnl|CDD|218582 pfam05419, GUN4, GUN4-like

 Score =  155 bits (395), Expect = 7e-48
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 24/149 (16%)

Query: 97  LHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSD 156
           L   L A  +++ADEET RLL+ LAG   EKRG+++FS+++     DL+ ID+LW +YS+
Sbjct: 1   LQDLLAAGKWKEADEETSRLLLELAGR--EKRGWLYFSDIENFPCEDLRTIDQLWVKYSN 58

Query: 157 NKFGYSVQKKIWEKVNKD------FTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGK 210
            +FG+SVQK+I+  +         +  F  RVGW K         N+  +  E  +    
Sbjct: 59  GRFGFSVQKQIYLSLGGTWDYDKIWEKFGDRVGWRK-------GGNWLRYD-ELTFSL-- 108

Query: 211 ETPVGHLPLTNALRGTQLLASILNHPAFE 239
             P GHLP         L+ ++L+HPA+ 
Sbjct: 109 SAPEGHLPGVR------LMDALLSHPAWS 131

In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking. Length = 132

>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 45 NTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEP 91
           TTTTTTT   T  T ++ + + T++++ ++ T+TTTTTTTTTT  P
Sbjct: 46 TTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAP 92

This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide. Length = 143

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 39  SLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSE 90
           S+     +   T T   T  T SS SP+ T+S + +S ++TTTT+ + TT+ 
Sbjct: 796 SILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTG 847

Length = 872

>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 38 FSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTS 89
             SN + T+ + ++S +   + SS S +  SSSSSSS  S++ T  TT + 
Sbjct: 14 SGSSNTSVTSGSVSSSGSNSSSSSSNSSNGGSSSSSSSGDSSSGTRITTESE 65

This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggest that this family may be functionally analogous to pfam03958. Length = 95

>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function prediction only]

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 37  SFSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTS 89
           S  ++     T TTT+S +           TTS + +S+ T+TTT+ + TTT 
Sbjct: 803 SVVITKTVTQTQTTTSSPSPT--------QTTSPTQTSTSTTTTTSPSQTTTG 847

Length = 872

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF05419	132	GUN4: GUN4-like ; InterPro: IPR008629 In Arabidops	100.0

>PF05419 GUN4: GUN4-like ; InterPro: IPR008629 In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX

Probab=100.00  E-value=2.4e-49  Score=332.51  Aligned_cols=125  Identities=38%  Similarity=0.773  Sum_probs=100.4

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHHHHHHhccc--
Q 023340           97 LHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKD--  174 (283)
Q Consensus        97 L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkqIw~~v~~d--  174 (283)
                      |++||++|+|++||+||++|||++||+  +.+|||++++|++|||+||++||+||++||+||||||||++||+++++.  
T Consensus         1 L~~lL~~~~W~~AD~eT~~lml~~ag~--~~~~~l~~~~i~~~pc~dL~~ID~LW~~yS~GrFGFSVQk~I~~~~g~~~~   78 (132)
T PF05419_consen    1 LQDLLAQGKWKEADQETYRLMLKIAGR--EKRGWLDPEDIKNFPCEDLRTIDQLWVKYSNGRFGFSVQKQIWQSLGGTED   78 (132)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHH-C--CCHTS--HHHHCTS-HHHHHHHHHHHHHTTTT-SSHHHHHHHHHHTTT---
T ss_pred             CHHHHhhCCHHHHHHHHHHHHHHHhCC--CcCCcCCHHHHHhCCHHHHHHHHHHHHHhCCCCcChHHHHHHHHHcCCccc
Confidence            899999999999999999999999998  4789999999999999999999999999999999999999999999986  


Q ss_pred             -----HHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCC
Q 023340          175 -----FTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE  239 (283)
Q Consensus       175 -----~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~  239 (283)
                           |.+||++||||++++       |..| ++|+|++  +||+||||      +++++.++++||||+
T Consensus        79 ~~~~~~~~F~~~VGW~~~~~-------w~~y-~~l~f~l--~AP~GHLP------~~~~~~~~~~~~~~~  132 (132)
T PF05419_consen   79 YDREIWEKFGDRVGWRKGGQ-------WLSY-SELTFSL--NAPKGHLP------AVWWLSSLLSHPAWQ  132 (132)
T ss_dssp             -----HHHHHHHCT--CTTB--------SST-TTS--ST--TS-TT--S-------THHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHhcCCCCCCc-------cccc-ccceecC--CCCCCCCc------cHHHHHHHHcCCCcC
Confidence                 999999999998753       3334 5787655  69999999      678999999999985

GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participate in plastid-to-nucleus signalling by regulating magnesium-protoporphyrin IX synthesis or trafficking.; PDB: 1Y6I_A 1Z3X_A 1Z3Y_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
1z3x_A	238	Structure Of Gun4 From Thermosynechococcus Elongatu		3e-25
1z3y_A	238	Structure Of Gun4-1 From Thermosynechococcus Elonga		8e-25
1y6i_A	233	Synechocystis Gun4 Length = 233		2e-21

>pdb|1Z3X|A Chain A, Structure Of Gun4 From Thermosynechococcus Elongatus Length = 238

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 9/147 (6%)
Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           + +  L + L A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW
Sbjct: 99  VDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLW 158
Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S  +FGYSVQ+++W    +++   + ++GW +          +  +P EFIW+    
Sbjct: 159 LAFSLGRFGYSVQRQLWLGCGQNWDRLWEKIGWRQG-------KRWPRYPNEFIWD--LS 209
Query: 212 TPVGHLPLTNALRGTQLLASILNHPAF 238
            P GHLPLTN LRG Q+L ++LNHPA+
Sbjct: 210 APRGHLPLTNQLRGVQVLNALLNHPAW 236

>pdb|1Z3Y|A Chain A, Structure Of Gun4-1 From Thermosynechococcus Elongatus Length = 238

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 103 AQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYS 162
           A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW  +S  +FGYS
Sbjct: 110 AEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYS 169
Query: 163 VQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNA 222
           VQ+++W    +++   + ++GW +          +  +P EFIW+     P GHLPLTN 
Sbjct: 170 VQRQLWLGCGQNWDRLWEKIGWRQG-------KRWPRYPNEFIWD--LSAPRGHLPLTNQ 220
Query: 223 LRGTQLLASILNHPAF 238
           LRG Q+L ++LNHPA+
Sbjct: 221 LRGVQVLNALLNHPAW 236

>pdb|1Y6I|A Chain A, Synechocystis Gun4 Length = 233

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           I +  L + L +Q+F  ADE TR  L  LAG  + +R +++F+EV+     DL  I+ LW
Sbjct: 91  IDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALW 150
Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S+  FG+SVQ+++W    K+FT  + ++GW            +  +P  F W+    
Sbjct: 151 WLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGWKSG-------NVWTRWPKGFTWD--LS 201
Query: 212 TPVGHLPLTNALRGTQLLASILNHPAF 238
            P GHLPL N LRG ++  S+  HP +
Sbjct: 202 APQGHLPLLNQLRGVRVAESLYRHPVW 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1z3x_A	238	Putative cytidyltransferase; transferase activator	1e-51
1y6i_A	233	Mg-chelatase cofactor GUN4; helix-bundle, porphyri	2e-49
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-07

>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A Length = 238

 Score =  168 bits (427), Expect = 1e-51
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 10/206 (4%)

Query: 34  NSLSFSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPIS 93
           + L   L ++   +            +  L  S  +S  +  Q           +   + 
Sbjct: 42  HLLQEFLKDSATFSPPPAPWIRGQA-YRLLFHSPEASVQAFLQQHYPQGVIPLRSDRGVD 100

Query: 94  FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
           +  L + L A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW  
Sbjct: 101 YQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLA 160

Query: 154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
           +S  +FGYSVQ+++W    +++   + ++GW +          +  +P EFIW+     P
Sbjct: 161 FSLGRFGYSVQRQLWLGCGQNWDRLWEKIGWRQ-------GKRWPRYPNEFIWDL--SAP 211

Query: 214 VGHLPLTNALRGTQLLASILNHPAFE 239
            GHLPLTN LRG Q+L ++LNHPA+ 
Sbjct: 212 RGHLPLTNQLRGVQVLNALLNHPAWT 237

>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1 Length = 233

 Score =  162 bits (411), Expect = 2e-49
 Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 12/218 (5%)

Query: 22  AAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTT 81
            A  A +       L   L+ N           N   T  +L   T ++     Q +  T
Sbjct: 24  IAALAEMGEGGQGILLDYLAKNVPLEKPVLAVGNVYQTLRNLEQETITTQL---QRNYPT 80

Query: 82  TTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAE 141
                 +++ I +  L + L +Q+F  ADE TR  L  LAG  + +R +++F+EV+    
Sbjct: 81  GIFPLQSAQGIDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPA 140

Query: 142 ADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFP 201
            DL  I+ LW  +S+  FG+SVQ+++W    K+FT  + ++GW            +  +P
Sbjct: 141 LDLHTINALWWLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGWKS-------GNVWTRWP 193

Query: 202 TEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE 239
             F W+     P GHLPL N LRG ++  S+  HP + 
Sbjct: 194 KGFTWDL--SAPQGHLPLLNQLRGVRVAESLYRHPVWS 229

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 4  NSLQSLHHHSFLRRHHPDAAPAAALKPT 31
           +L+ L   + L+ +  D+APA A+K T
Sbjct: 20 QALKKLQ--ASLKLYADDSAPALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
1y6i_A	233	Mg-chelatase cofactor GUN4; helix-bundle, porphyri	100.0
1z3x_A	238	Putative cytidyltransferase; transferase activator	100.0

>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1

Probab=100.00  E-value=6.3e-59  Score=420.63  Aligned_cols=146  Identities=35%  Similarity=0.725  Sum_probs=138.2

Q ss_pred             CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHH
Q 023340           87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKK  166 (283)
Q Consensus        87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkq  166 (283)
                      .|++|+||++|+++|++|+|++||+||+++||++||+.++++|||+++||++|||+||++||+||++||+||||||||++
T Consensus        86 ~S~~gidY~~L~~lL~~~~wkeAD~eT~~lml~~ag~~~~~~g~l~~~di~~fPc~DL~tID~LW~~yS~GrFGFSVQk~  165 (233)
T 1y6i_A           86 QSAQGIDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRR  165 (233)
T ss_dssp             CCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTCTTCSSCCHHHHTTSCHHHHHHHHHHHHHTTTTCSSHHHHHH
T ss_pred             ccccCcCHHHHHHHHHhCCHHHHHHHHHHHHHHHhchhccccCCcCHHHHHhCCHHHHHHHHHHHHhccCCCcChHHHHH
Confidence            58999999999999999999999999999999999998789999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCCCC
Q 023340          167 IWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGM  241 (283)
Q Consensus       167 Iw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~~~  241 (283)
                      ||+++|++|++||++||||+++       +|..||++|+|++  +||+||||+.++|||+|||++||+||||+..
T Consensus       166 I~~~lgg~~~~f~~rVGWr~~~-------~W~~y~~~l~f~l--~AP~GHLP~~~~lrG~~l~~~ll~hpa~~~~  231 (233)
T 1y6i_A          166 LWLASGKEFTKLWPKIGWKSGN-------VWTRWPKGFTWDL--SAPQGHLPLLNQLRGVRVAESLYRHPVWSQY  231 (233)
T ss_dssp             HHHHTTTCHHHHHHHHTCCTTC-------CCSSCCCSCCCST--TSCTTCCSCCCCTTCTHHHHHHHTSTHHHHT
T ss_pred             HHHHhCCCHHHhhhhcCCccCC-------ccccCcccceeeC--CCCCCCCCCccccchHHHHHHHHCCcccccc
Confidence            9999999999999999999865       3667888888755  6999999999999999999999999999764

>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A

Probab=100.00  E-value=1.2e-58  Score=419.93  Aligned_cols=145  Identities=38%  Similarity=0.796  Sum_probs=137.0

Q ss_pred             CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHH
Q 023340           87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKK  166 (283)
Q Consensus        87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkq  166 (283)
                      .|++|+||++|+++|++|+|++||+||+++||++||+.++++|||+++||++|||+||++||+||++||+||||||||++
T Consensus        94 ~S~~gidY~~L~~lL~~~~wkeAD~eT~~lml~~ag~~~~~~g~l~~~di~~fPc~DL~tID~LW~~yS~GrFGFSVQk~  173 (238)
T 1z3x_A           94 RSDRGVDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYSVQRQ  173 (238)
T ss_dssp             CCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCHHHHHHTSCCHHHHHTSCHHHHHHHHHHHHHTTTTCCSHHHHHH
T ss_pred             ccccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccccCCcCHHHHHhCCHHHHHHHHHHHHHccCCCcChHHHHH
Confidence            58999999999999999999999999999999999997778999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCCC
Q 023340          167 IWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEG  240 (283)
Q Consensus       167 Iw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~~  240 (283)
                      ||+++|++|++|||+||||+++       .|..||++|+|++  +||+||||+.++|||+|||++||+||||+.
T Consensus       174 I~~~lgg~~~~f~~rVGWr~~~-------~W~~y~~~l~fsl--~AP~GHLP~~~~lrGv~l~~~ll~hpa~~~  238 (238)
T 1z3x_A          174 LWLGCGQNWDRLWEKIGWRQGK-------RWPRYPNEFIWDL--SAPRGHLPLTNQLRGVQVLNALLNHPAWTA  238 (238)
T ss_dssp             HHHHTTTCHHHHHHHTTCCBTT-------BCCCTTTTSCCST--TSCTTCCSCCCCTTCSHHHHHHHTCGGGGC
T ss_pred             HHHHhCCCHHHhccccCCccCC-------eeccChhhceeeC--CCCCCCCCcCcccccHHHHHHHHcCccccC
Confidence            9999999999999999999864       3667888888755  699999999999999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1y6ia2	151	a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {S	7e-58
d1z3xa2	148	a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Ther	4e-57

>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 151

class: All alpha proteins
fold: GUN4-like
superfamily: GUN4-like
family: GUN4-like
domain: Mg-chelatase cofactor Gun4
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score =  179 bits (457), Expect = 7e-58
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 9/148 (6%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           I +  L + L +Q+F  ADE TR  L  LAG  + +R +++F+EV+     DL  I+ LW
Sbjct: 9   IDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALW 68

Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S+  FG+SVQ+++W    K+FT  + ++GW            +  +P  F W+    
Sbjct: 69  WLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGWKS-------GNVWTRWPKGFTWDL--S 119

Query: 212 TPVGHLPLTNALRGTQLLASILNHPAFE 239
            P GHLPL N LRG ++  S+  HP + 
Sbjct: 120 APQGHLPLLNQLRGVRVAESLYRHPVWS 147

>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]} Length = 148

class: All alpha proteins
fold: GUN4-like
superfamily: GUN4-like
family: GUN4-like
domain: GUN4-like protein Ycf53
species: Thermosynechococcus elongatus [TaxId: 146786]

 Score =  178 bits (452), Expect = 4e-57
 Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 9/147 (6%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           + +  L + L A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW
Sbjct: 9   VDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLW 68

Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S  +FGYSVQ+++W    +++   + ++GW +          +  +P EFIW+    
Sbjct: 69  LAFSLGRFGYSVQRQLWLGCGQNWDRLWEKIGWRQ-------GKRWPRYPNEFIWDL--S 119

Query: 212 TPVGHLPLTNALRGTQLLASILNHPAF 238
            P GHLPLTN LRG Q+L ++LNHPA+
Sbjct: 120 APRGHLPLTNQLRGVQVLNALLNHPAW 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1y6ia2	151	Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc	100.0
d1z3xa2	148	GUN4-like protein Ycf53 {Thermosynechococcus elong	100.0

>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: All alpha proteins
fold: GUN4-like
superfamily: GUN4-like
family: GUN4-like
domain: Mg-chelatase cofactor Gun4
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=100.00  E-value=1.7e-62  Score=417.61  Aligned_cols=147  Identities=35%  Similarity=0.716  Sum_probs=138.1

Q ss_pred             CCCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHH
Q 023340           86 TTTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQK  165 (283)
Q Consensus        86 ~~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQk  165 (283)
                      -.|++||||++|+++|++|+|++||+||++|||++||+.++++|||+++||++|||+||++|||||++||+||||||||+
T Consensus         3 l~S~~gidY~~L~~lL~~~~W~eAD~eT~~lml~~ag~~~~~~gwl~~~di~~fPc~DL~~ID~LW~~yS~GrFGFSVQ~   82 (151)
T d1y6ia2           3 LQSAQGIDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQR   82 (151)
T ss_dssp             CCCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTCTTCSSCCHHHHTTSCHHHHHHHHHHHHHTTTTCSSHHHHH
T ss_pred             CCccCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHhchhccccCCCCHHHHHhCCHHHHHHHHHHHHHhcCCccCcHHHH
Confidence            35899999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCCCC
Q 023340          166 KIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGM  241 (283)
Q Consensus       166 qIw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~~~  241 (283)
                      +||++++++|++||++||||+++.       |..|+++|+|++  +||+||||+.++|||+|||++||+||||.+.
T Consensus        83 ~Iw~~~g~~~~~F~~~VGWr~~~~-------w~~y~~~l~f~l--~AP~GHLP~~~~lrG~~~~~~l~~h~~~~~~  149 (151)
T d1y6ia2          83 RLWLASGKEFTKLWPKIGWKSGNV-------WTRWPKGFTWDL--SAPQGHLPLLNQLRGVRVAESLYRHPVWSQY  149 (151)
T ss_dssp             HHHHHTTTCHHHHHHHHTCCTTCC-------CSSCCCSCCCST--TSCTTCCSCCCCTTCTHHHHHHHTSTHHHHT
T ss_pred             HHHHHcCCCHHHHHHHcCcCCCCc-------ccCCHhhccccC--CCCCCCCCccchhhhHHHHHHHHcCcchhhc
Confidence            999999999999999999998753       556777887754  7999999999999999999999999999865

>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: GUN4-like
superfamily: GUN4-like
family: GUN4-like
domain: GUN4-like protein Ycf53
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=100.00  E-value=8.6e-61  Score=405.89  Aligned_cols=144  Identities=38%  Similarity=0.801  Sum_probs=135.7

Q ss_pred             CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHH
Q 023340           87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKK  166 (283)
Q Consensus        87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkq  166 (283)
                      .|++||||++|+++|++|+|++||+||++|||++||+.++++|||+++||++|||+||++|||||++||+||||||||++
T Consensus         4 ~S~~gidY~~L~~lL~~~~W~eAD~eT~~lml~~ag~~~~~~~~l~~~di~~fPc~dL~~ID~LW~~yS~G~FGFSVQk~   83 (148)
T d1z3xa2           4 RSDRGVDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYSVQRQ   83 (148)
T ss_dssp             CCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCHHHHHHTSCCHHHHHTSCHHHHHHHHHHHHHTTTTCCSHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHCcHHHHHHHHHHHHHHHhChhhcccCCCCHHHHhhCCHHHHHHHHHHHHHhcCCccCcHHHHH
Confidence            48999999999999999999999999999999999987678999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCC
Q 023340          167 IWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFE  239 (283)
Q Consensus       167 Iw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~  239 (283)
                      ||++++++|++||++||||+++       .|..|+++|+|++  +||+||||++++|||+||++++|+||||.
T Consensus        84 Iw~~~g~~~~~F~~~VGWr~~~-------~w~~y~~~l~f~l--~AP~GHLP~~~~lrg~~~~~~~l~h~a~~  147 (148)
T d1z3xa2          84 LWLGCGQNWDRLWEKIGWRQGK-------RWPRYPNEFIWDL--SAPRGHLPLTNQLRGVQVLNALLNHPAWT  147 (148)
T ss_dssp             HHHHTTTCHHHHHHHTTCCBTT-------BCCCTTTTSCCST--TSCTTCCSCCCCTTCSHHHHHHHTCGGGG
T ss_pred             HHHHcCCCHHHHHHHcCcccCC-------cCCCCchhceecC--CCCCCCCCcCCccchHHHHHHHhcCcccc
Confidence            9999999999999999999865       3556778887754  79999999999999999999999999996