Citrus Sinensis ID: 023442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYAY
Secondary Structure (PSIPRED)
ccccccccHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccEEEEHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHccccccEEHHHcccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEHHHHHHHHcccccHHccccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccEEEEcHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHccHHHccccccccccccccHcccHHcccccccccccEEEEEEc
Coil and Loop (DISEMBL)
mpscgcpspkvaghgcfgvslmldpkfVGEAMSVIAantnvpvsvkcrigvddhdsynQLCDFIYkvsslsptrhFIIHSRKALlngispaenrtipplkYEYYYALLrdfpdltftlnggiNTVDEVNAALRKGAHHVMVGRaayqnpwytlghvdtaiygapssgltrRQVVEKYQIYGDAilgtygnnrphvrdVMKPLlhffhsepgnglfkrkADAAFQTCKTVKSFLEETIVAipdsvldspieeaprgredlfadvhdllpppykareQEVLYAY
Flexible Loop (DISEMBL)
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKallngispaenrtiPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIvaipdsvldspIEEAPRGREDlfadvhdllpppykareqevLYAY
Low Complexity Region (SEG)
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYAY
Disordered region (IsUnstruct)
**********VAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVL**************FADV*******************
Disordered Region (DISOPRED)
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSV*******************HDLLPPPYKARE**VLYAY
Disordered Region (DISEMBL)
*********KVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYAY
Disordered Region (DISPRO)
***CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDS*********EDLFADVHDLLPPPYKAREQEVLYAY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9CL29	327	tRNA-dihydrouridine synth	yes	no	0.776	0.669	0.411	1e-38
Q8CWK7	326	tRNA-dihydrouridine synth	yes	no	0.833	0.720	0.363	4e-38
Q9KUX9	327	tRNA-dihydrouridine synth	yes	no	0.822	0.709	0.372	1e-37
Q8Z1T1	332	tRNA-dihydrouridine synth	N/A	no	0.826	0.701	0.387	2e-37
P44794	327	tRNA-dihydrouridine synth	yes	no	0.794	0.685	0.389	7e-37
Q8ZKH4	332	tRNA-dihydrouridine synth	yes	no	0.826	0.701	0.383	7e-37
Q7UBC5	330	tRNA-dihydrouridine synth	yes	no	0.730	0.624	0.419	1e-36
P32695	330	tRNA-dihydrouridine synth	N/A	no	0.730	0.624	0.419	1e-36
Q8X5V6	330	tRNA-dihydrouridine synth	N/A	no	0.730	0.624	0.419	1e-36
Q8FB30	331	tRNA-dihydrouridine synth	yes	no	0.730	0.622	0.419	2e-36

>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain Pm70) GN=dusA PE=3 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/238 (41%), Positives = 136/238 (57%), Gaps = 19/238 (7%)

Query: 5   GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
           GCPS +V  +G FG  LM     V + +S +    ++PV+VK RIG+DD DSY  LC+F+
Sbjct: 98  GCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFV 156

Query: 65  YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
            KV   +  + FIIH+RKA L+G+SP ENR IPPL YE  Y L RDFP L  ++NGGI T
Sbjct: 157 QKVHE-AGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLLMSINGGIKT 215

Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
           ++E+   L+     VMVGR AYQNP   LG++D A++      +T R+ VEK   Y +  
Sbjct: 216 LEEMQQHLQY-MDGVMVGREAYQNP-SLLGYIDQALFDPTCPVVTPREAVEKMFPYIEQQ 273

Query: 185 L--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFL 233
           L  G Y N+      V++ +L  F S  G   ++R       KA A  +  +   SF+
Sbjct: 274 LSQGVYLNH------VVRHMLGAFQSCKGARQWRRYLSENAHKAGAGLEVVEKALSFV 325

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
Pasteurella multocida (strain Pm70) (taxid: 272843)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=dusA PE=3 SV=2

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 133/242 (54%), Gaps = 7/242 (2%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM +P+ V + ++ +    ++PV+VK RIG+DD DSY  L D
Sbjct: 90  NVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLTD 148

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           F+  VS       F IH+RKA L+G+SP ENR IPPL Y   Y L +DF  LT  +NGG+
Sbjct: 149 FVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGV 208

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E    L+     VM+GR AYQ+P Y L  VD  ++G+ S    RRQ+VE+   Y +
Sbjct: 209 KSLEEAKEHLQH-LDGVMIGREAYQSP-YLLASVDQELFGSQSPIKKRRQIVEEMYPYIE 266

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
             L     N  ++  + + +L  F + PG   ++R          +    L++ +  IP 
Sbjct: 267 QQLA----NGAYLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGSGIEVLQQALAKIPQ 322

Query: 243 SV 244
            +
Sbjct: 323 EL 324

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Vibrio vulnificus (taxid: 672)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/239 (37%), Positives = 128/239 (53%), Gaps = 7/239 (2%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM +P  V E ++ + A  ++PV+VK RIG+DD DSY  L  
Sbjct: 90  NVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQ 148

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  V+       F IH+RKA L+G+SP ENR IPPL Y   Y + RDFP LT  +NGG+
Sbjct: 149 FIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGV 208

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E    L+     VM+GR AYQNP Y L  VD  I+G  +    R QV+ +   Y +
Sbjct: 209 KSLEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIE 266

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
             L    +   H+  + + +L  F + PG   ++R               +E+ +  IP
Sbjct: 267 REL----SQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 98  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 157 FINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E    LR     VMVGR AYQNP   L  VD  I+GA ++      VV     Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDTDPVAVVRAMYPYIE 274

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
             L    +   ++  + + +L  F   PG   ++R             + LE+ +  I D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADAAVLEQALKLIAD 330

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Salmonella typhi (taxid: 90370)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1

 Score =  154 bits (389), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 132/239 (55%), Gaps = 15/239 (6%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM     V + +  + +   +PV+VK RIG+D+ DSY  LCD
Sbjct: 96  NVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCD 154

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI KV      + FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT  +NGGI
Sbjct: 155 FIEKVQG-KGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGI 213

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            T++E+   L+     VMVGR AYQNP   LG +D A++   +  +T  + VE    Y +
Sbjct: 214 KTIEEMKQHLQY-VDGVMVGREAYQNP-SLLGQIDQALFDPNAPIVTAHEAVESMLPYIE 271

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR-------KADAAFQTCKTVKSFLE 234
             L    +   H+  +++ +L  F +  G   ++R       K  A  +  +T  SF+E
Sbjct: 272 QQL----SQGIHLNHIVRHILGAFQNCKGARQWRRYLSENAFKQGAGIEVVETALSFVE 326

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1

 Score =  154 bits (389), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 7/240 (2%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 98  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 157 FIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E    LR     VMVGR AYQNP   L  VD  I+GA ++      VV     Y +
Sbjct: 217 KSLEEAKEHLRH-MDGVMVGREAYQNPG-ILAAVDREIFGADTTDADPVAVVRAMYPYIE 274

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
             L    +   ++  + + +L  F   PG   ++R             + LE+ +  + D
Sbjct: 275 REL----SQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVAD 330

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3 SV=2

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 11/217 (5%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 96  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E  A L+     VMVGR AYQNP   L  VD  I+G+  +      VV     Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272

Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
             L  GTY      +  +++ +L  F   PG   ++R
Sbjct: 273 HELSQGTY------LGHIIRHMLGLFQGIPGARQWRR 303

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Shigella flexneri (taxid: 623)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12) GN=dusA PE=3 SV=3

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 96  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E  A L+     VMVGR AYQNP   L  VD  I+G+  +      VV     Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272

Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
             L  GTY      +  + + +L  F   PG   ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA PE=3 SV=2

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 96  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E  A L+     VMVGR AYQNP   L  VD  I+G+  +      VV     Y +
Sbjct: 215 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 272

Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
             L  GTY      +  + + +L  F   PG   ++R
Sbjct: 273 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 303

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Escherichia coli O157:H7 (taxid: 83334)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 11/217 (5%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCD
Sbjct: 97  NVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 155

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FI  VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI
Sbjct: 156 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 215

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +++E  A L+     VMVGR AYQNP   L  VD  I+G+  +      VV     Y +
Sbjct: 216 KSLEEAKAHLQH-MDGVMVGREAYQNPG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIE 273

Query: 183 AIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
             L  GTY      +  + + +L  F   PG   ++R
Sbjct: 274 RELSQGTY------LGHITRHMLGLFQGIPGARQWRR 304

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255553550	375	tRNA-dihydrouridine synthase A, putative	0.989	0.744	0.820	1e-137
225450085	433	PREDICTED: tRNA-dihydrouridine synthase	0.989	0.644	0.804	1e-134
449463996	431	PREDICTED: tRNA-dihydrouridine synthase	0.978	0.640	0.805	1e-134
449516697	431	PREDICTED: tRNA-dihydrouridine synthase	0.978	0.640	0.805	1e-134
297736275	423	unnamed protein product [Vitis vinifera]	0.989	0.659	0.804	1e-134
359487300	377	PREDICTED: tRNA-dihydrouridine synthase	0.989	0.740	0.804	1e-134
224055152	378	predicted protein [Populus trichocarpa]	0.982	0.732	0.813	1e-132
224106093	380	predicted protein [Populus trichocarpa]	0.982	0.728	0.784	1e-129
356525006	430	PREDICTED: tRNA-dihydrouridine synthase	0.975	0.639	0.772	1e-126
21536881	404	unknown [Arabidopsis thaliana]	0.989	0.690	0.753	1e-126

>gi|255553550|ref|XP_002517816.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis] gi|223543088|gb|EEF44623.1| tRNA-dihydrouridine synthase A, putative [Ricinus communis]

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/279 (82%), Positives = 255/279 (91%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSP+VAGHGCFGV LMLDPKFVGEAMSVIAANT+VPVSVKCRIGVD+HDSYN+LCD
Sbjct: 97  NCGCPSPRVAGHGCFGVRLMLDPKFVGEAMSVIAANTDVPVSVKCRIGVDNHDSYNELCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSSLSPT+HFIIHSRKALLNGISPAENR IPPLKYEYY+ALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPAENRKIPPLKYEYYFALLRDFPDLRFTINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           N +DEVN ALR+GAH VMVGRAA+ NPW  LGHVD+AIYGAP SGLTRRQV+E+YQ Y D
Sbjct: 217 NCIDEVNLALREGAHGVMVGRAAFNNPWTVLGHVDSAIYGAPESGLTRRQVLEQYQAYAD 276

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           AILGTYGNNRP+VRDV+KPLL  F+SEPGNGL+KR+ADAAFQ+C T+KSF EET+VAIPD
Sbjct: 277 AILGTYGNNRPNVRDVVKPLLGLFYSEPGNGLWKRRADAAFQSCTTIKSFFEETLVAIPD 336

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVLYA 281
           +VLDSPI EAP GR+DLF +V  LLPPPY  REQ+V YA
Sbjct: 337 TVLDSPIAEAPSGRQDLFTNVRGLLPPPYATREQDVAYA 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450085|ref|XP_002277955.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis vinifera]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 212

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 213 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 272

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 273 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 332

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++L  YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF  CKT+KSFLEET+VAIPD
Sbjct: 333 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 392

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
           SVLD+P+ +AP GREDLFA++ DLLP PY+   +EQEVLYA
Sbjct: 393 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463996|ref|XP_004149715.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/277 (80%), Positives = 254/277 (91%), Gaps = 1/277 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCD 212

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSSLSPT+HF+IHSRKALLNGISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGI
Sbjct: 213 FIYKVSSLSPTKHFVIHSRKALLNGISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGI 272

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           NTVDE NAALR GAH VM+GRAAYQNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD
Sbjct: 273 NTVDEANAALRLGAHGVMMGRAAYQNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGD 332

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++LG YG N+P++RDV+KPLLH F+++PGNG +KRKADAAF  CKT+KSF EETIVAIPD
Sbjct: 333 SVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPD 391

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
            VLD+P+ E P GREDLFA+   L+PPPY+ REQ+V+
Sbjct: 392 YVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQKVV 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516697|ref|XP_004165383.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Cucumis sativus]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/277 (80%), Positives = 254/277 (91%), Gaps = 1/277 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAA T+ PVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAAKTDAPVSVKCRIGVDDHDSYNELCD 212

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSSLSPT+HF+IHSRKALLNGISPAENRTIPPLKYEY+YAL+RDFPDL FT+NGGI
Sbjct: 213 FIYKVSSLSPTKHFVIHSRKALLNGISPAENRTIPPLKYEYFYALMRDFPDLRFTINGGI 272

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           NTVDE NAALR GAH VM+GRAAYQNPW TLGHVDTAIYGAPSSG+TRRQV+E+YQ+YGD
Sbjct: 273 NTVDEANAALRLGAHGVMMGRAAYQNPWRTLGHVDTAIYGAPSSGITRRQVLEQYQVYGD 332

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++LG YG N+P++RDV+KPLLH F+++PGNG +KRKADAAF  CKT+KSF EETIVAIPD
Sbjct: 333 SVLGRYG-NKPNIRDVVKPLLHLFYTDPGNGPWKRKADAAFMHCKTIKSFFEETIVAIPD 391

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
            VLD+P+ E P GREDLFA+   L+PPPY+ REQ+V+
Sbjct: 392 YVLDAPVAEPPSGREDLFANTLSLMPPPYEDREQKVV 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736275|emb|CBI24913.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 143 NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 202

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 203 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 262

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 263 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 322

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++L  YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF  CKT+KSFLEET+VAIPD
Sbjct: 323 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 382

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
           SVLD+P+ +AP GREDLFA++ DLLP PY+   +EQEVLYA
Sbjct: 383 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487300|ref|XP_003633563.1| PREDICTED: tRNA-dihydrouridine synthase A-like isoform 2 [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/281 (80%), Positives = 257/281 (91%), Gaps = 2/281 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFV EAMSVIAAN++VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 97  NCGCPSPKVAGHGCFGVRLMLDPKFVAEAMSVIAANSDVPVSVKCRIGVDDHDSYNELCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSS SPTRHFIIHSRKALLNGISPA+NR IPPLKYEYY+ LLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSQSPTRHFIIHSRKALLNGISPADNRKIPPLKYEYYFGLLRDFPDLRFTINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           N VDEVNAALR+GAH VMVGRAAY NPWYTLGHVD+A+YGAP S L+RRQV+E+YQ+YGD
Sbjct: 217 NCVDEVNAALRQGAHGVMVGRAAYHNPWYTLGHVDSAVYGAPVSDLSRRQVLEQYQVYGD 276

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++L  YG +RP +R+V+KPLLHFF+SEPGNGL+KRKADAAF  CKT+KSFLEET+VAIPD
Sbjct: 277 SVLEKYGPHRPSIREVVKPLLHFFYSEPGNGLWKRKADAAFFHCKTIKSFLEETLVAIPD 336

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKA--REQEVLYA 281
           SVLD+P+ +AP GREDLFA++ DLLP PY+   +EQEVLYA
Sbjct: 337 SVLDAPVAKAPSGREDLFANLSDLLPLPYETSEQEQEVLYA 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055152|ref|XP_002298425.1| predicted protein [Populus trichocarpa] gi|222845683|gb|EEE83230.1| predicted protein [Populus trichocarpa]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/279 (81%), Positives = 252/279 (90%), Gaps = 2/279 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGV LMLDPKFVGEAMSVIAANT+VPVSVKCRIG+DDHDSYN+LCD
Sbjct: 97  NCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAANTDVPVSVKCRIGLDDHDSYNELCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSSLSPT+HFIIHSRKALLNGISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           N VDEVNAALR+GAH VMVGRAAY   W TL HVDTAIYGAPSSGLTRRQV+E+YQ+YGD
Sbjct: 217 NCVDEVNAALREGAHGVMVGRAAYNYLWNTLAHVDTAIYGAPSSGLTRRQVLEQYQVYGD 276

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQ--TCKTVKSFLEETIVAI 240
           A+LGTYGN+RP++RD++KPL  FF+SEPGN L+KRKADAAFQ     TVKSF EET+VAI
Sbjct: 277 AVLGTYGNSRPNIRDLIKPLFGFFYSEPGNNLWKRKADAAFQMKNITTVKSFFEETLVAI 336

Query: 241 PDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
           PD+VLDS   E P GR+DLFA+V  LLPPPY+ REQEV+
Sbjct: 337 PDAVLDSHAAELPSGRKDLFANVRGLLPPPYETREQEVV 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106093|ref|XP_002314040.1| predicted protein [Populus trichocarpa] gi|222850448|gb|EEE87995.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/279 (78%), Positives = 249/279 (89%), Gaps = 2/279 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPS KVAGHGCFG  LMLDPKFV EAMSVIAANT+VPVSVKCRIGVDDHDSYN+LCD
Sbjct: 97  NCGCPSAKVAGHGCFGARLMLDPKFVSEAMSVIAANTDVPVSVKCRIGVDDHDSYNELCD 156

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVSSLSPT+HFIIHSRKALLNGISPA+NR IPPLKYEYYYALLRDFPDL FT+NGGI
Sbjct: 157 FIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGI 216

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           + VDEVNAALR+GAH VMVGRAAY N W TL HVD+A+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 217 DCVDEVNAALREGAHGVMVGRAAYNNLWNTLAHVDSAVYGEPSSGLTRRQVLEQYQVYGD 276

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAF--QTCKTVKSFLEETIVAI 240
           A+LGTYGNNRP++R++++PL  FF+SEPGN L+KRKADAAF  +  KTVKSF EET+ AI
Sbjct: 277 AVLGTYGNNRPNMRELIRPLSGFFYSEPGNSLWKRKADAAFLNKNIKTVKSFFEETLAAI 336

Query: 241 PDSVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
           PD+VLDSP+ E P GR DLFA+V  LLPPPY+ R +EV+
Sbjct: 337 PDAVLDSPVAELPSGRIDLFANVRGLLPPPYETRTEEVV 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525006|ref|XP_003531118.1| PREDICTED: tRNA-dihydrouridine synthase A-like [Glycine max]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/277 (77%), Positives = 245/277 (88%), Gaps = 2/277 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGVSLML+PKFV EAMS IAA+TNVPVSVKCRIGVDDHDSYN+LCD
Sbjct: 153 NCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCD 212

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIY+VSSLSPT+HFIIHSRKALLNGISPAENR+IPPLKYEY+Y LLRDFPDL FT+NGGI
Sbjct: 213 FIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLRFTINGGI 272

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +VDEV+AA   GAH VMVGRAAY NPW  LGHVD AIYG PS  LTRRQV+E+Y +YGD
Sbjct: 273 TSVDEVSAAREAGAHGVMVGRAAYNNPWQILGHVDAAIYGTPSCDLTRRQVLERYLVYGD 332

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++LG YG +RP +RD++KPLLH FHSEPGNGL+KRKADAAF+ C T++SF EET+VAIPD
Sbjct: 333 SVLGKYG-HRPTLRDIVKPLLHLFHSEPGNGLWKRKADAAFKNCTTMESFFEETLVAIPD 391

Query: 243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
           SVLDSP+ E P GR DLFA++H+LLP PY+ RE  V+
Sbjct: 392 SVLDSPVAEPPPGR-DLFANMHNLLPAPYRTREATVI 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536881|gb|AAM61213.1| unknown [Arabidopsis thaliana]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/280 (75%), Positives = 250/280 (89%), Gaps = 1/280 (0%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           +CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct: 125 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 184

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
           FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct: 185 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 244

Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
            +V +VNAAL++GAH VMVGRAAY NPW TLGHVDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct: 245 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGHVDTAVYGVPSSGLTRRQVLEQYQVYGD 304

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           ++LGT+GN RP+VRD++KPLL+ FHSE  N L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct: 305 SVLGTHGNGRPNVRDLVKPLLNLFHSENANSLWKRRADAAFKECRSVGSLLEESLRAIPD 364

Query: 243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
            VLDSPI  +P  G ED+FADVH++LPPPY+A E+ +L A
Sbjct: 365 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2087408	419	AT3G63510 [Arabidopsis thalian	0.989	0.665	0.753	1.8e-117
TAIR|locus:2152758	387	AT5G47970 [Arabidopsis thalian	0.982	0.715	0.689	1.3e-107
UNIPROTKB|Q9KUX9	327	dusA "tRNA-dihydrouridine synt	0.815	0.703	0.379	1.2e-35
TIGR_CMR|VC_0379	327	VC_0379 "TIM-barrel protein, y	0.815	0.703	0.379	1.2e-35
UNIPROTKB|P32695	330	dusA "tRNA-dihydrouridine synt	0.730	0.624	0.422	6.5e-35
GENEDB_PFALCIPARUM|PFI0920c	577	PFI0920c "Dihydrouridine synth	0.450	0.220	0.5	9.8e-35
UNIPROTKB|Q8I2W5	577	PFI0920c "Dihydrouridine synth	0.450	0.220	0.5	9.8e-35
UNIPROTKB|Q48A03	335	CPS_0353 "tRNA-dihydrouridine	0.659	0.555	0.429	2.8e-34
TIGR_CMR|CPS_0353	335	CPS_0353 "TIM-barrel protein,	0.659	0.555	0.429	2.8e-34
UNIPROTKB|Q607T6	360	MCA1669 "tRNA-dihydrouridine s	0.726	0.569	0.401	3.6e-34

TAIR|locus:2087408 AT3G63510 [Arabidopsis thaliana (taxid:3702)]

 Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
 Identities = 211/280 (75%), Positives = 250/280 (89%)

Query:     3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
             +CGCPSPKVAGHGCFGVSLML PK VGEAMS IAANTNVPV+VKCRIGVD+HDSY++LCD
Sbjct:   140 NCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCD 199

Query:    63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
             FIYKVS+LSPTRHFI+HSRKALL GISPA+NR IPPLKYEYYYAL+RDFPDL FT+NGGI
Sbjct:   200 FIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGI 259

Query:   123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
              +V +VNAAL++GAH VMVGRAAY NPW TLG VDTA+YG PSSGLTRRQV+E+YQ+YGD
Sbjct:   260 TSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGD 319

Query:   183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
             ++LGT+GN RP+VRD++KPLL+ FHSE GN L+KR+ADAAF+ C++V S LEE++ AIPD
Sbjct:   320 SVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKECRSVGSLLEESLRAIPD 379

Query:   243 SVLDSPIEEAPR-GREDLFADVHDLLPPPYKAREQEVLYA 281
              VLDSPI  +P  G ED+FADVH++LPPPY+A E+ +L A
Sbjct:   380 CVLDSPISGSPESGDEDVFADVHNVLPPPYEAGEEIILCA 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0006808 "regulation of nitrogen utilization" evidence=ISS

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2152758 AT5G47970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
 Identities = 191/277 (68%), Positives = 234/277 (84%)

Query:     3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
             +CGCPSPKV+G GCFG  LMLDPKFVGEAMSVIAANTN  V+VKCRIGVDDHDSYN+LCD
Sbjct:    98 NCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIAANTNAAVTVKCRIGVDDHDSYNELCD 157

Query:    63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
             FI+ VSSLSPT+HFIIHSRKALL+G+SP++NR IPPLKYE+++ALLRDFPDL FT+NGGI
Sbjct:   158 FIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRIPPLKYEFFFALLRDFPDLKFTINGGI 217

Query:   123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
             N+V E +AALR GAH VM+GRA Y NPW+ LGHVDT +YG+PSSG+TRRQV+EKY++YG+
Sbjct:   218 NSVVEADAALRSGAHGVMLGRAVYYNPWHILGHVDTVVYGSPSSGITRRQVLEKYKLYGE 277

Query:   183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
             ++LG YG  RP++RD+++PL++ FHSE GNG +KR+ DAA   C T++SFL+E + AIPD
Sbjct:   278 SVLGKYGKGRPNLRDIVRPLINLFHSESGNGQWKRRTDAALLHCTTLQSFLDEVLPAIPD 337

Query:   243 SVLDSPIEEAPRGREDLFADVHDLLPPPYKAREQEVL 279
              VLDS   +   GREDLFADV  LLPPPY+    + L
Sbjct:   338 YVLDSSAVKEATGREDLFADVQRLLPPPYEKESFKAL 374

GO:0003824 "catalytic activity" evidence=IEA

GO:0006808 "regulation of nitrogen utilization" evidence=ISS

GO:0008033 "tRNA processing" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q9KUX9 dusA "tRNA-dihydrouridine synthase A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 90/237 (37%), Positives = 128/237 (54%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS +V  +G FG  LM +P  V E ++ + A  ++PV+VK RIG+DD DSY  L  FI
Sbjct:    92 GCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFI 150

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               V+       F IH+RKA L+G+SP ENR IPPL Y   Y + RDFP LT  +NGG+ +
Sbjct:   151 ATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKS 210

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
             ++E    L+     VM+GR AYQNP Y L  VD  I+G  +    R QV+ +   Y +  
Sbjct:   211 LEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERE 268

Query:   185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
             L + G    H+  + + +L  F + PG   ++R               +E+ +  IP
Sbjct:   269 L-SQGT---HLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0379 VC_0379 "TIM-barrel protein, yjbN family" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 90/237 (37%), Positives = 128/237 (54%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS +V  +G FG  LM +P  V E ++ + A  ++PV+VK RIG+DD DSY  L  FI
Sbjct:    92 GCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFI 150

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               V+       F IH+RKA L+G+SP ENR IPPL Y   Y + RDFP LT  +NGG+ +
Sbjct:   151 ATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKS 210

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
             ++E    L+     VM+GR AYQNP Y L  VD  I+G  +    R QV+ +   Y +  
Sbjct:   211 LEEAKLHLQH-LDGVMIGREAYQNP-YLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERE 268

Query:   185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP 241
             L + G    H+  + + +L  F + PG   ++R               +E+ +  IP
Sbjct:   269 L-SQGT---HLGHMTRHMLGLFQNMPGARQWRRHISENAHKPGAGLEVVEQALAKIP 321

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P32695 dusA "tRNA-dihydrouridine synthase A" [Escherichia coli K-12 (taxid:83333)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 90/213 (42%), Positives = 120/213 (56%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS +V  +G FG  LM + + V + +  +    ++PV+VK RIG+DD DSY  LCDFI
Sbjct:    98 GCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFI 156

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               VS       FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT ++NGGI +
Sbjct:   157 NTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS 216

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
             ++E  A L+     VMVGR AYQNP   L  VD  I+G+  +      VV     Y +  
Sbjct:   217 LEEAKAHLQH-MDGVMVGREAYQNPGI-LAAVDREIFGSSDTDADPVAVVRAMYPYIERE 274

Query:   185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
             L + G    H+    + +L  F   PG   ++R
Sbjct:   275 L-SQGTYLGHIT---RHMLGLFQGIPGARQWRR 303

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA;IMP

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA;IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GENEDB_PFALCIPARUM|PFI0920c PFI0920c "Dihydrouridine synthase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 308 (113.5 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
 Identities = 64/128 (50%), Positives = 82/128 (64%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS KVA  G FG SLM +P+ V   +  I     +PV+VK R GVD++DS++ L  FI
Sbjct:   288 GCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFI 347

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               VSS+    HFI+H+RKA L G+ P +NR IPPL+Y   Y L + +P L FTLNGGI T
Sbjct:   348 ETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQT 406

Query:   125 VDEVNAAL 132
             + E  A L
Sbjct:   407 IQEAIALL 414

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8I2W5 PFI0920c "Dihydrouridine synthase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 308 (113.5 bits), Expect = 9.8e-35, Sum P(2) = 9.8e-35
 Identities = 64/128 (50%), Positives = 82/128 (64%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS KVA  G FG SLM +P+ V   +  I     +PV+VK R GVD++DS++ L  FI
Sbjct:   288 GCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFI 347

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               VSS+    HFI+H+RKA L G+ P +NR IPPL+Y   Y L + +P L FTLNGGI T
Sbjct:   348 ETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPPLEYYKVYDLCKLYPHLKFTLNGGIQT 406

Query:   125 VDEVNAAL 132
             + E  A L
Sbjct:   407 IQEAIALL 414

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q48A03 CPS_0353 "tRNA-dihydrouridine synthase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 82/191 (42%), Positives = 113/191 (59%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS +V  +G FG  LM +P  V + ++ + + TN+PV+VK RIG+DD DSY  L  FI
Sbjct:   105 GCPSDRVQ-NGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
              +VS  +  RHFIIH+RKA L G+SP +NR +PPL Y+  Y +  DF DL  ++NGGI T
Sbjct:   164 EEVSK-ADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKT 222

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
               E N  L+     VM+GR  Y +P Y L   D  IY + +  L+R +V++    Y D  
Sbjct:   223 FSEANEHLQH-IDGVMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDET 280

Query:   185 LGTYGNNRPHV 195
             +   G    HV
Sbjct:   281 IAN-GGRAWHV 290

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0353 CPS_0353 "TIM-barrel protein, yjbN family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 82/191 (42%), Positives = 113/191 (59%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPS +V  +G FG  LM +P  V + ++ + + TN+PV+VK RIG+DD DSY  L  FI
Sbjct:   105 GCPSDRVQ-NGRFGACLMAEPALVAQCVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFI 163

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
              +VS  +  RHFIIH+RKA L G+SP +NR +PPL Y+  Y +  DF DL  ++NGGI T
Sbjct:   164 EEVSK-ADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKT 222

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
               E N  L+     VM+GR  Y +P Y L   D  IY + +  L+R +V++    Y D  
Sbjct:   223 FSEANEHLQH-IDGVMIGREIYNSP-YMLADADNEIYQSDTIKLSRSEVIDLMVPYIDET 280

Query:   185 LGTYGNNRPHV 195
             +   G    HV
Sbjct:   281 IAN-GGRAWHV 290

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q607T6 MCA1669 "tRNA-dihydrouridine synthase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 86/214 (40%), Positives = 118/214 (55%)

Query:     5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
             GCPSP+V   G FG  LM +P+ V + +  +    +VPV+VK RIG+DD DSY  L  F+
Sbjct:   116 GCPSPRVQT-GRFGACLMAEPERVADCVRAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFV 174

Query:    65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
               V+     R FI+H+RKA L G+SP ENR  PPL+Y+    L  + P+L   LNGGI T
Sbjct:   175 TIVAEAG-CRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRRLKSELPELAIVLNGGIQT 233

Query:   125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG-APSSGLTRRQVVEKYQIYGDA 183
             +DE    L      VM+GRAAY NP Y L   D   YG +     TR +V+E +  Y   
Sbjct:   234 LDEAERHL-SWCDGVMIGRAAYHNP-YLLAEADRRCYGHSDVRPRTREEVIEDFMPYVRN 291

Query:   184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
              L     +R H   + + +L  +H+ PG   ++R
Sbjct:   292 ELSK--GSRLHA--LTRHILGLYHATPGGKRWRR 321

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028772001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (377 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00008841001	SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (250 aa)							•		0.528
	GSVIVG00005777001	SubName- Full=Chromosome chr3 scaffold_158, whole genome shotgun sequence; (214 aa)	•								0.528
	GSVIVG00003012001	RecName- Full=D-tyrosyl-tRNA(Tyr) deacylase; EC=3.1.-.-;; Hydrolyzes D-tyrosyl-tRNA(Tyr) into D [...] (153 aa)	•								0.514
	GSVIVG00037524001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (396 aa)	•								0.495
	GSVIVG00007295001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (265 aa)	•								0.428
	GSVIVG00020869001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (451 aa)	•								0.417
	GSVIVG00015180001	RecName- Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29;; Exchanges the guanine residue with [...] (367 aa)	•						•		0.406
	GSVIVG00035363001	SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)							•		0.402

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PRK11815	333	PRK11815, PRK11815, tRNA-dihydrouridine synthase A	5e-77
TIGR00742	318	TIGR00742, yjbN, tRNA dihydrouridine synthase A	1e-56
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	5e-38
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	7e-37
pfam01207	309	pfam01207, Dus, Dihydrouridine synthase (Dus)	9e-30
TIGR00737	319	TIGR00737, nifR3_yhdG, putative TIM-barrel protein	4e-14
PRK10415	321	PRK10415, PRK10415, tRNA-dihydrouridine synthase B	6e-05
PRK10550	312	PRK10550, PRK10550, tRNA-dihydrouridine synthase C	6e-04

>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional

 Score =  236 bits (606), Expect = 5e-77
 Identities = 89/218 (40%), Positives = 126/218 (57%), Gaps = 16/218 (7%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCPS +V  +G FG  LM +P+ V + +  +    ++PV+VK RIG+DD DSY  LCDF
Sbjct: 98  VGCPSDRVQ-NGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDF 156

Query: 64  IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
           +  V+  +    FI+H+RKA L G+SP ENR IPPL Y+  Y L RDFP LT  +NGGI 
Sbjct: 157 VDTVAE-AGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIK 215

Query: 124 TVDEVNAALRK--GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
           T++E    L+   G   VM+GRAAY NP+  L  VD  ++G P+  L+R +V+E    Y 
Sbjct: 216 TLEEAKEHLQHVDG---VMIGRAAYHNPYL-LAEVDRELFGEPAPPLSRSEVLEAMLPYI 271

Query: 182 DAIL--GTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
           +  L  G        +  + + +L  F   PG   ++R
Sbjct: 272 ERHLAQGGR------LNHITRHMLGLFQGLPGARAWRR 303

Length = 333

>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A

 Score =  184 bits (468), Expect = 1e-56
 Identities = 90/238 (37%), Positives = 130/238 (54%), Gaps = 8/238 (3%)

Query: 5   GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
           GCPS +V  +G FG  LM +   V + +  +    N+PV+VK RIG+D  DSY  LCDF+
Sbjct: 89  GCPSDRVQ-NGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFV 147

Query: 65  YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT 124
             VS     ++FI+H+RKA L+G+SP ENR IPPL+YE  Y L +DFP LT  +NGGI  
Sbjct: 148 EIVSGKG-CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKN 206

Query: 125 VDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAI 184
            +++   L      VMVGR AY+NP Y L +VD  I+      LTR+++VE+   Y    
Sbjct: 207 SEQIKQHLSH-VDGVMVGREAYENP-YLLANVDREIFNETDEILTRKEIVEQMLPY---- 260

Query: 185 LGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIPD 242
           +  Y +    +  + + LL  F  +PG   ++R               LE  +  +P+
Sbjct: 261 IEEYLSQGLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLETALETVPE 318

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score =  133 bits (337), Expect = 5e-38
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 15/148 (10%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCPSPKV   G  G +L+ DP+ V E +  +     +PV+VK R+G DD +   +  + 
Sbjct: 88  MGCPSPKVT-KGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEE---ETLEL 143

Query: 64  IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
              +   +      +H R          E R   P  ++Y    +++   +    NG I 
Sbjct: 144 AKALED-AGASALTVHGRT--------REQRYSGPADWDYIAE-IKEAVSIPVIANGDIF 193

Query: 124 TVDEVNAALRK-GAHHVMVGRAAYQNPW 150
           ++++    L + G   VM+GR A  NPW
Sbjct: 194 SLEDALRCLEQTGVDGVMIGRGALGNPW 221

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score =  132 bits (335), Expect = 7e-37
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMS-VIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           CGCPSPKV   G  G +L+ +P+ + E +  ++ A  ++PV+VK R+G DD D    L  
Sbjct: 100 CGCPSPKVVKGG-AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LAL 155

Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
            I ++   +      +H R      + PA+        ++Y   L    P +    NG I
Sbjct: 156 EIARILEDAGADALTVHGRTRAQGYLGPAD--------WDYIKELKEAVPSIPVIANGDI 207

Query: 123 NTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG 181
            ++++    L   GA  VM+GR A  NPW  L      +        T  +V++  + + 
Sbjct: 208 KSLEDAKEMLEYTGADGVMIGRGALGNPW--LFRQIDYLETGELLPPTLAEVLDILREHL 265

Query: 182 DAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEE 235
           + +L  YG     +R + K L ++    PG    +R      +    V+  LE 
Sbjct: 266 ELLLEYYGKK--GLRRLRKHLGYYLKGLPGARELRRAL-NKAEDGAEVRRALEA 316

Length = 323

>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus)

 Score =  113 bits (286), Expect = 9e-30
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 16/223 (7%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCP+ KV   G  G +L+ DP  V + +  +    ++PV+VK RIG D  +S+    + 
Sbjct: 87  MGCPAKKVTRGG-AGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWD--ESHENAVEI 143

Query: 64  IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
             +V          +H R       + A+N    P  ++    + +    +    NG I 
Sbjct: 144 ARRVEDAGAQ-ALTVHGR-------TRAQNYEG-PADWDAIKQVKQAVS-IPVIANGDIT 193

Query: 124 TVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
             ++    L   GA  VM+GR A  NPW       T   G         +  E    +  
Sbjct: 194 DAEDAQRCLSYTGADGVMIGRGALGNPWL-FAEQHTVKTGEFDPRPPLAEEAEIVLEHLS 252

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT 225
            +   YG ++  +R   K L  +    PG    +R+ +  F  
Sbjct: 253 YLEEFYGEDK-GLRHARKHLAWYLKGFPGAAELRRELNDVFDP 294

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309

>gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 20/241 (8%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCP PK+   G  G +L+ DP  +G+ +  +    ++PV+VK RIG DD    N     
Sbjct: 96  MGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-AHIN--AVE 151

Query: 64  IYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG 121
             +++  +  +   +H R      +G   A    I  +K       +R  P +    NG 
Sbjct: 152 AARIAEDAGAQAVTLHGRTRAQGYSG--EANWDIIARVK-----QAVR-IPVIG---NGD 200

Query: 122 INTVDEVNAAL-RKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY 180
           I + ++  A L   G   VM+GR A  NPW           G      T  + ++    +
Sbjct: 201 IFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRH 260

Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI 240
              +   YG ++  +R   K +  +    PGN   ++  + A  + + VK  L++    +
Sbjct: 261 LQLLADYYGESK-GLRIARKHIAWYLKGFPGNAALRQTLNHA-SSFQEVKQLLDDFFETV 318

Query: 241 P 241
            
Sbjct: 319 G 319

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319

>gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 5   GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFI 64
           GCP+ KV      G +L+  P  V   ++ +    +VPV++K R G       ++ C  I
Sbjct: 99  GCPAKKV-NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE---HRNCVEI 154

Query: 65  YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
            +++     +   IH  +R  L NG   AE  +I  +K +    ++          NG I
Sbjct: 155 AQLAEDCGIQALTIHGRTRACLFNG--EAEYDSIRAVKQKVSIPVIA---------NGDI 203

Query: 123 NTVDEVNAALR-KGAHHVMVGRAAYQNPW 150
               +  A L   GA  +M+GRAA   PW
Sbjct: 204 TDPLKARAVLDYTGADALMIGRAAQGRPW 232

Length = 321

>gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFV---GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQ 59
           +CGCPS  V G G  G +L+ DP+ +    +AM   A   ++PV+VK R+G D  +   +
Sbjct: 95  NCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMRE-AVPAHLPVTVKVRLGWDSGERKFE 152

Query: 60  LCD 62
           + D
Sbjct: 153 IAD 155

Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	100.0
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	100.0
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	100.0
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	100.0
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	100.0
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	100.0
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	100.0
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	100.0
KOG2333	614	consensus Uncharacterized conserved protein [Gener	100.0
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	99.97
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	99.96
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	99.94
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	99.9
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	99.9
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	99.89
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	99.88
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	99.86
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	99.86
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	99.85
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	99.85
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	99.84
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	99.82
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	99.82
PRK13523	337	NADPH dehydrogenase NamA; Provisional	99.8
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	99.79
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	99.76
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	99.76
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	99.75
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	99.75
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	99.74
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	99.73
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	99.72
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	99.72
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.72
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.71
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	99.7
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	99.69
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	99.62
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	99.61
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.57
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.55
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	99.53
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	99.51
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.5
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	99.5
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	99.43
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.42
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.42
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.42
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	99.42
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.4
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.38
PRK10605	362	N-ethylmaleimide reductase; Provisional	99.38
PLN02826	409	dihydroorotate dehydrogenase	99.38
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.35
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	99.35
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	99.35
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.27
PLN02411	391	12-oxophytodienoate reductase	99.27
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.23
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	99.2
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	99.19
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.19
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	99.13
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.12
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.12
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	98.98
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	98.92
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.91
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.87
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	98.84
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	98.83
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.82
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.82
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.81
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	98.81
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.74
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.72
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	98.72
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.71
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	98.66
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	98.62
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.62
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	98.61
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	98.59
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	98.58
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	98.58
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.56
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.55
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	98.52
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	98.52
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	98.47
PLN02535	364	glycolate oxidase	98.47
KOG1436	398	consensus Dihydroorotate dehydrogenase [Nucleotide	98.46
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	98.46
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	98.43
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	98.42
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.41
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	98.41
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	98.38
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	98.36
PLN02979	366	glycolate oxidase	98.3
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.3
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	98.3
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.29
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.23
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.18
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	98.17
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	98.16
KOG1799	471	consensus Dihydropyrimidine dehydrogenase [Nucleot	98.16
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	98.13
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.13
PRK00208	250	thiG thiazole synthase; Reviewed	98.1
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.06
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.04
KOG0134	400	consensus NADH:flavin oxidoreductase/12-oxophytodi	98.04
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.02
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.0
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.99
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.97
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.95
PRK07695	201	transcriptional regulator TenI; Provisional	97.93
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	97.93
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.93
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.93
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.88
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.88
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.85
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.85
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.84
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	97.84
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.83
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	97.79
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	97.72
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.71
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.64
KOG0538	363	consensus Glycolate oxidase [Energy production and	97.63
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	97.62
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	97.62
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	97.56
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.56
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	97.54
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.51
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	97.48
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	97.46
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	97.45
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	97.45
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	97.43
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.42
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.41
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	97.35
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.35
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.34
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	97.33
PRK07226	267	fructose-bisphosphate aldolase; Provisional	97.3
PLN02591	250	tryptophan synthase	97.29
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	97.28
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.24
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	97.23
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.19
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.18
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	97.15
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	97.15
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	97.14
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.11
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	97.1
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	97.08
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	97.04
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.01
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	97.01
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	97.01
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	96.99
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.98
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	96.97
PLN02617	538	imidazole glycerol phosphate synthase hisHF	96.96
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	96.96
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	96.94
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	96.91
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	96.89
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.89
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	96.84
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	96.82
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	96.81
PRK04302	223	triosephosphate isomerase; Provisional	96.81
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	96.7
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	96.69
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	96.61
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	96.6
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	96.56
PLN02334	229	ribulose-phosphate 3-epimerase	96.54
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	96.5
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.47
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	96.46
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	96.44
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	96.4
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	96.38
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	96.38
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	96.36
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.32
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.31
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	96.3
PRK07315	293	fructose-bisphosphate aldolase; Provisional	96.29
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	96.21
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.21
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	96.2
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	96.17
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	96.16
PRK06806	281	fructose-bisphosphate aldolase; Provisional	96.11
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.0
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.96
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.94
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	95.91
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	95.9
PRK06801	286	hypothetical protein; Provisional	95.75
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	95.74
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	95.74
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	95.73
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	95.71
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	95.7
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	95.68
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	95.66
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	95.66
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	95.64
PLN02460	338	indole-3-glycerol-phosphate synthase	95.61
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	95.6
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	95.55
PRK08999	312	hypothetical protein; Provisional	95.5
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	95.3
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	95.23
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	95.18
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	95.17
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.14
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	95.09
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	95.09
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.09
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	95.07
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	95.06
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	95.05
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	94.99
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.99
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	94.9
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	94.87
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	94.76
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	94.75
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	94.61
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	94.61
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	94.57
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	94.53
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	94.52
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.48
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	94.43
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	94.42
COG1411	229	Uncharacterized protein related to proFAR isomeras	94.42
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	94.42
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	94.4
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	94.32
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	94.28
PRK06852	304	aldolase; Validated	94.23
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	94.21
PRK08227	264	autoinducer 2 aldolase; Validated	94.18
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	94.18
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.15
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	94.06
PLN02535	364	glycolate oxidase	94.06
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	93.99
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	93.96
PLN02979	366	glycolate oxidase	93.94
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	93.94
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.9
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	93.88
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	93.84
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	93.84
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	93.81
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	93.68
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	93.63
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	93.63
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	93.54
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	93.35
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	93.33
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	93.28
PRK07709	285	fructose-bisphosphate aldolase; Provisional	93.18
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	93.02
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	93.0
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.0
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.82
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	92.72
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.66
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	92.58
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	92.57
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	92.54
TIGR01334	277	modD putative molybdenum utilization protein ModD.	92.47
PRK08185	283	hypothetical protein; Provisional	92.28
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.28
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.25
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	92.22
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	92.13
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	92.11
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	92.03
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	92.03
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	91.92
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	91.9
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	91.84
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.69
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	91.68
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	91.66
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	91.63
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	91.62
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	91.58
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	91.47
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	91.41
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	91.36
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	91.28
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	91.2
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	91.17
PLN02424	332	ketopantoate hydroxymethyltransferase	91.11
cd03321	355	mandelate_racemase Mandelate racemase (MR) catalyz	91.02
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	90.92
PRK14040	593	oxaloacetate decarboxylase; Provisional	90.67
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	90.57
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	90.51
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	90.48
cd03329	368	MR_like_4 Mandelate racemase (MR)-like subfamily o	90.48
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	90.38
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	90.37
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	90.35
PRK14567	253	triosephosphate isomerase; Provisional	90.3
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	90.14
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	90.09
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	89.87
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	89.62
PLN02460	338	indole-3-glycerol-phosphate synthase	89.59
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	89.57
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	89.42
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	89.38
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	89.26
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	89.25
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	89.22
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	89.19
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	89.16
PRK08005	210	epimerase; Validated	89.14
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	89.05
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	88.96
PRK09282	592	pyruvate carboxylase subunit B; Validated	88.89
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	88.56
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	88.55
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	88.45
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	88.43
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	88.41
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	88.39
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	88.25
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	87.98
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	87.89
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	87.87
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	87.57
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	87.55
PRK06096	284	molybdenum transport protein ModD; Provisional	87.52
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	87.38
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.3
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	87.23
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	87.14
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	86.99
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	86.49
PRK14565	237	triosephosphate isomerase; Provisional	86.48
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	86.46
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	86.28
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	86.14
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	85.98
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	85.72
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	85.61
KOG4201	289	consensus Anthranilate synthase component II [Amin	85.37
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	85.34
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	85.32
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	85.26
PLN02561	253	triosephosphate isomerase	84.93
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	84.85
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	84.66
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	84.58
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	84.55
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	84.51
PLN02417	280	dihydrodipicolinate synthase	84.5
PRK09250	348	fructose-bisphosphate aldolase; Provisional	84.5
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	84.16
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	84.16
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	84.1
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	84.05
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	84.05
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	83.83
PRK05835	307	fructose-bisphosphate aldolase; Provisional	83.67
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	83.5
PTZ00333	255	triosephosphate isomerase; Provisional	83.44
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	83.35
COG4981	717	Enoyl reductase domain of yeast-type FAS1 [Lipid m	83.27
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	83.23
PRK00042	250	tpiA triosephosphate isomerase; Provisional	82.87
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	82.84
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	82.47
cd03324	415	rTSbeta_L-fuconate_dehydratase Human rTS beta is e	82.3
cd03328	352	MR_like_3 Mandelate racemase (MR)-like subfamily o	82.17
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	81.99
COG1908	132	FrhD Coenzyme F420-reducing hydrogenase, delta sub	81.66
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	81.59
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	81.54
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	81.52
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	81.29
PRK04147	293	N-acetylneuraminate lyase; Provisional	81.17
cd03327	341	MR_like_2 Mandelate racemase (MR)-like subfamily o	80.7
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	80.57
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	80.36
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	80.24
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	80.14

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1e-49  Score=371.42  Aligned_cols=221  Identities=28%  Similarity=0.495  Sum_probs=187.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ||||||+++|++.|. ||+||++|+++.+||+++++++ ++|||||||+||++.+.   ...+++++++++|+++|+||+
T Consensus        98 lN~GCP~~~V~~~g~-Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~---~~~~ia~~~~~~g~~~ltVHg  173 (323)
T COG0042          98 LNCGCPSPKVVKGGA-GAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI---LALEIARILEDAGADALTVHG  173 (323)
T ss_pred             eeCCCChHHhcCCCc-chhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc---cHHHHHHHHHhcCCCEEEEec
Confidence            899999999998775 9999999999999999999999 49999999999998651   123467788999999999999


Q ss_pred             CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhh
Q 023442           81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA  159 (282)
Q Consensus        81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~  159 (282)
                      ||++++|.+++        +|++|+++++..+++|||+||||+|++|++++++ +||||||||||+++||||| .+++..
T Consensus       174 Rtr~~~y~~~a--------d~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~-~~i~~~  244 (323)
T COG0042         174 RTRAQGYLGPA--------DWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLF-RQIDYL  244 (323)
T ss_pred             ccHHhcCCCcc--------CHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHH-HHHHHh
Confidence            99987777654        4899999998865699999999999999999999 9999999999999999997 665222


Q ss_pred             hhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442          160 IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA  239 (282)
Q Consensus       160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~  239 (282)
                      ..|+.. ++++.++++.+.+|++.+.++||  ..++..+|||+.||+++++++++||+.+++. .+..++.+.++.+..+
T Consensus       245 ~~g~~~-~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~~-~~~~~~~~~l~~~~~~  320 (323)
T COG0042         245 ETGELL-PPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLKGLPGARELRRALNKA-EDGAEVRRALEAVFEE  320 (323)
T ss_pred             hcCCCC-CCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhcCccHHHHHHHHhcc-CcHHHHHHHHHHHHhh
Confidence            334432 36788899999999999999998  4689999999999999999999999987543 5666666666555443

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=100.00  E-value=4e-49  Score=366.63  Aligned_cols=232  Identities=37%  Similarity=0.672  Sum_probs=197.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++++++| |||+||++|+++.+|++++++++++|||||+|+||++.++.+++.+ +++.++++|+++|+||+|
T Consensus        86 lN~GCP~~~v~~~g-~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~-~~~~l~~~G~~~itvHgR  163 (318)
T TIGR00742        86 LNVGCPSDRVQNGN-FGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCD-FVEIVSGKGCQNFIVHAR  163 (318)
T ss_pred             EECCCCHHHhCCCC-eehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHH-HHHHHHHcCCCEEEEeCC
Confidence            79999999998655 6999999999999999999999999999999999987655555554 456788999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY  161 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~  161 (282)
                      |+..+|.++..++.++|.+|+.++++++..++||||+||||+|++|+.++++ ||||||||||++.||||| .+++..+.
T Consensus       164 t~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if-~~~~~~l~  241 (318)
T TIGR00742       164 KAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLL-ANVDREIF  241 (318)
T ss_pred             chhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHH-HHHHHHhc
Confidence            9766777766777788889999999988766899999999999999999997 999999999999999997 67766555


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Q 023442          162 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAIP  241 (282)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~  241 (282)
                      |.+...+++.++++.+++|++.+.++    ..+++.+|||+.||++|+|++++||++++....+..+..+++++.+..++
T Consensus       242 ~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  317 (318)
T TIGR00742       242 NETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLETALETVP  317 (318)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHHHHHHhcc
Confidence            44434467778888888888765443    24789999999999999999999999998765554577799999887765

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=100.00  E-value=1.6e-45  Score=343.39  Aligned_cols=222  Identities=22%  Similarity=0.303  Sum_probs=187.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++|+++|. ||+|+++|+++.+|++++++++++||+||+|.||++..  .+..+ +++.++++|+++|+||+|
T Consensus        96 lN~gCP~~~v~~~g~-Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~--~~~~~-~a~~le~~G~d~i~vh~r  171 (321)
T PRK10415         96 INMGCPAKKVNRKLA-GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH--RNCVE-IAQLAEDCGIQALTIHGR  171 (321)
T ss_pred             EeCCCCHHHHcCCCc-ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCc--chHHH-HHHHHHHhCCCEEEEecC
Confidence            899999999998886 99999999999999999999999999999999998743  12222 456678999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      |+......++        +|+.++++++. +++|||+||||.|++|++++++ +|||+||||||+++|||+| .+++...
T Consensus       172 t~~~~~~G~a--------~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if-~~~~~~~  241 (321)
T PRK10415        172 TRACLFNGEA--------EYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF-REIQHYL  241 (321)
T ss_pred             ccccccCCCc--------ChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHH-HHHHHHH
Confidence            8532222112        38888888775 5899999999999999999998 9999999999999999996 6776644


Q ss_pred             -hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442          161 -YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA  239 (282)
Q Consensus       161 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~  239 (282)
                       .|+..+++++.++++.+++|++.+.++||+ +.++..+|||+.||++++|++++||+++++. ++..++.+++++++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~  319 (321)
T PRK10415        242 DTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQEHAPNDQFRRTFNAI-EDASEQLEALEAYFEN  319 (321)
T ss_pred             hCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence             355444567788889999999999999997 6789999999999999999999999998654 7888888888877643

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=100.00  E-value=7.6e-47  Score=350.64  Aligned_cols=217  Identities=26%  Similarity=0.434  Sum_probs=159.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++|+++|. ||+||++|+++.+|++++++++++|||||||+||++..  +++.+ +++.++++|+++|+||+|
T Consensus        85 lN~GCP~~~v~~~g~-Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~--~~~~~-~~~~l~~~G~~~i~vH~R  160 (309)
T PF01207_consen   85 LNMGCPAPKVTKGGA-GAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP--EETIE-FARILEDAGVSAITVHGR  160 (309)
T ss_dssp             EEE---SHHHHHCT--GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C--HHHHH-HHHHHHHTT--EEEEECS
T ss_pred             ccCCCCHHHHhcCCc-ChhhhcChHHhhHHHHhhhcccccceEEecccccccch--hHHHH-HHHHhhhcccceEEEecC
Confidence            899999999998875 99999999999999999999999999999999999532  23444 356788999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      |+.+.+..        +.+|++++++++.. +||||+||||+|++|++++++ +||||||||||++.|||||.+ .....
T Consensus       161 t~~q~~~~--------~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~-~~~~~  230 (309)
T PF01207_consen  161 TRKQRYKG--------PADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE-IDQIK  230 (309)
T ss_dssp             -TTCCCTS-----------HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH-HHCHH
T ss_pred             chhhcCCc--------ccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh-hhhhc
Confidence            97654432        34599999988764 699999999999999999999 899999999999999999843 22222


Q ss_pred             hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHH
Q 023442          161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE  234 (282)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~  234 (282)
                      .|......+..+.+..+.+|++.+.+++|. ...+..++||+.||++++++++.||+.+++. .+..++.+.++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~-~~~~e~~~~l~  302 (309)
T PF01207_consen  231 EGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFKGFPGARKFRRELNKC-KTLEEFLELLE  302 (309)
T ss_dssp             HHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH--SHHHHHHHH-
T ss_pred             cCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHccCCcHHHHHHHHHhh-CCHHHHhhhhc
Confidence            232222223456677777888888888987 6789999999999999999999999988543 55566666565

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=100.00  E-value=5.1e-45  Score=341.55  Aligned_cols=236  Identities=38%  Similarity=0.726  Sum_probs=201.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||++++.+ ++|||+|++||+++.+|++++++++++||+||+|+||++.++.+++.+ +++.++++|+++|+||+|
T Consensus        96 lN~gCP~~~v~~-~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~-~~~~l~~aG~d~i~vh~R  173 (333)
T PRK11815         96 LNVGCPSDRVQN-GRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCD-FVDTVAEAGCDTFIVHAR  173 (333)
T ss_pred             EcCCCCHHHccC-CCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHH-HHHHHHHhCCCEEEEcCC
Confidence            899999999875 558999999999999999999999999999999999987655555555 456788999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY  161 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~  161 (282)
                      +.+.+|.++..++.++|.+|+.++++++..+++|||+||||+|++|++++++ +|||||||||++.|||+| .++...+.
T Consensus       174 t~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~-~~~~~~~~  251 (333)
T PRK11815        174 KAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLL-AEVDRELF  251 (333)
T ss_pred             chhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHH-HHHHHHhc
Confidence            9866777766777889999999999887656899999999999999999998 699999999999999996 77776566


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhh-HHHHHHHHHHHHHhC
Q 023442          162 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQT-CKTVKSFLEETIVAI  240 (282)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~  240 (282)
                      |.+.+.+++.++++.+++|++.+.+ +|+   .+..+|||+.||++|+|++++||+++++.... ..++ +++++.+..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~  326 (333)
T PRK11815        252 GEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGI-EVLEEALALV  326 (333)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCH-HHHHHHHHhh
Confidence            6654456788999999999987776 454   58999999999999999999999999775433 4455 9999999888


Q ss_pred             CCCCCC
Q 023442          241 PDSVLD  246 (282)
Q Consensus       241 ~~~~~~  246 (282)
                      ++..++
T Consensus       327 ~~~~~~  332 (333)
T PRK11815        327 EEAALE  332 (333)
T ss_pred             hhhhcc
Confidence            877654

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=100.00  E-value=7.6e-45  Score=337.28  Aligned_cols=212  Identities=20%  Similarity=0.305  Sum_probs=172.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      ||||||+++|+++|+ ||+|+++|+++.+|+++|++++  ++|||||+|+||++.+.+   .+ ++++++++|+++|+||
T Consensus        94 iN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~---~~-~a~~l~~~Gvd~i~Vh  168 (312)
T PRK10550         94 LNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERK---FE-IADAVQQAGATELVVH  168 (312)
T ss_pred             EeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHH---HH-HHHHHHhcCCCEEEEC
Confidence            899999999998886 9999999999999999999988  499999999999764333   22 4567899999999999


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHh
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDT  158 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~  158 (282)
                      +||+.+ |.+      .++++|+.++++++. .++|||+||||+|++|++++++ +|||+||||||+++||||| ++++.
T Consensus       169 ~Rt~~~-~y~------g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf-~~~~~  239 (312)
T PRK10550        169 GRTKED-GYR------AEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLS-RVVKY  239 (312)
T ss_pred             CCCCcc-CCC------CCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHH-HHhhc
Confidence            999643 221      123469999898875 5899999999999999999998 9999999999999999997 56543


Q ss_pred             hhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHH
Q 023442          159 AIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE  234 (282)
Q Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~  234 (282)
                         |.+  .+++.++++.+.+|++.+.+.+++ ..++..||||+.||++++++++++|+++++. ++..++.+.++
T Consensus       240 ---g~~--~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~-~~~~e~~~~~~  308 (312)
T PRK10550        240 ---NEP--RMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRKEYDEATELFQEIRAL-NNSPDIARAIQ  308 (312)
T ss_pred             ---CCC--CCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCHHHHHHHHH
Confidence               432  346677777777787654555554 4578899999999999999999999988543 55555555544

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-42  Score=319.17  Aligned_cols=245  Identities=31%  Similarity=0.426  Sum_probs=191.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      |||||| ++++++|+|||.||.+|+++.++|++++..++.|||+|||++.|..++    ++ .+++++++|++.|+||||
T Consensus       104 lNcGCP-q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kT----vd-~ak~~e~aG~~~ltVHGR  177 (358)
T KOG2335|consen  104 LNCGCP-QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKT----VD-YAKMLEDAGVSLLTVHGR  177 (358)
T ss_pred             ccCCCC-HHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHH----HH-HHHHHHhCCCcEEEEecc
Confidence            899999 579999999999999999999999999999999999999998665433    33 356789999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      |+.++|.      ..+|++|+.++.+++++++||||+||+|.+++|+.++++ |||||||+|||+|.|||+|..      
T Consensus       178 tr~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~------  245 (358)
T KOG2335|consen  178 TREQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT------  245 (358)
T ss_pred             cHHhcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc------
Confidence            9988884      236778999999999887899999999999999999999 999999999999999999842      


Q ss_pred             hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCCh-HHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442          161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNG-LFKRKADAAFQTCKTVKSFLEETIVA  239 (282)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~-~~r~~l~~~~~~~~~~~~~~~~~~~~  239 (282)
                      .|-  . .+..+++++|+++   ..+++|..  ....++.|+...++.+.... .+|+.++. ..++.++.+|+++....
T Consensus       246 ~~~--~-~~~~~~~~~~l~~---~~e~~g~~--~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~-~~~~~~~~~~l~~~~~~  316 (358)
T KOG2335|consen  246 AGY--G-PTPWGCVEEYLDI---AREFGGLS--SFSLIRHHLFKMLRPLLSIHQDLRRDLAA-LNSCESVIDFLEELVLM  316 (358)
T ss_pred             CCC--C-CCHHHHHHHHHHH---HHHcCCCc--hhhHHHHHHHHHHHHHHhhhHHHHHHHhh-ccchhhHHHHHHHHHHH
Confidence            111  1 2224677776544   44566552  35667777777777654433 35666654 47788999999977777


Q ss_pred             CCCCCCCCCCccC-------CCCccccccccCCCCCCCCcc
Q 023442          240 IPDSVLDSPIEEA-------PRGREDLFADVHDLLPPPYKA  273 (282)
Q Consensus       240 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  273 (282)
                      ++....+.+....       -.|.+..++......||.+..
T Consensus       317 v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~k  357 (358)
T KOG2335|consen  317 VRKRVEDGFGRGVEEITKFITPGPEDSLAAEYRVLPPWRSK  357 (358)
T ss_pred             HHhhhccccccCccccccccCCchhhhcccccccCCCcccC
Confidence            7666655544333       237777777777777776653

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=100.00  E-value=4.3e-39  Score=299.89  Aligned_cols=221  Identities=23%  Similarity=0.427  Sum_probs=181.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++++++++ |+.|+++|+++.+|+++|++.+++||+||+|+||++...  ++.+ +++.++++|+++|+||+|
T Consensus        94 lN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~-~a~~l~~~G~d~i~vh~r  169 (319)
T TIGR00737        94 INMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVE-AARIAEDAGAQAVTLHGR  169 (319)
T ss_pred             EECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHH-HHHHHHHhCCCEEEEEcc
Confidence            799999999998775 999999999999999999999999999999999976431  2223 355678999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      +... +.+       .+..|+.+.++++. .++|||+||||.|++|++++++ +|||+||+|||++.|||+| .+++...
T Consensus       170 ~~~~-~~~-------~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~-~~~~~~~  239 (319)
T TIGR00737       170 TRAQ-GYS-------GEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLF-RQIEQYL  239 (319)
T ss_pred             cccc-cCC-------CchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHH-HHHHHHH
Confidence            8632 221       12348888888775 5799999999999999999997 9999999999999999996 6666544


Q ss_pred             h-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHH
Q 023442          161 Y-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIV  238 (282)
Q Consensus       161 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~  238 (282)
                      . |...++.+..+.++.+.+|++.+.++||+ ..++..+|||+.+|++++++++++|+++.+. .+..++.+++++++.
T Consensus       240 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~  316 (319)
T TIGR00737       240 TTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLKGFPGNAALRQTLNHA-SSFQEVKQLLDDFFE  316 (319)
T ss_pred             hCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhcCCcHHHHHHHHHcC-CCHHHHHHHHHHHHh
Confidence            3 33333456678888888999988889987 5688999999999999999999999998654 777777777777654

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=277.81  Aligned_cols=188  Identities=21%  Similarity=0.371  Sum_probs=154.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCc-HHHHHHHHHHHHHhCCCCEEEEe
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~-~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      ||||||.+-|.++|+ ||+||++|-.+.++++++...+ ++|+|||||.|..+..+ +.+   .+.++..+.|++++|+|
T Consensus       352 lN~GCPIDlvy~qG~-GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~---Li~~i~newg~savTlH  427 (614)
T KOG2333|consen  352 LNMGCPIDLVYRQGG-GSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHE---LIPRIVNEWGASAVTLH  427 (614)
T ss_pred             ccCCCChheeeccCC-cchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHH---HHHHHhhccCcceEEec
Confidence            899999999999998 9999999999999999998887 46999999999887654 333   34556669999999999


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHH-cC-CCEEEecHHhhhCCccchhhh
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KG-AHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~-~g-~DgVmIGRgal~nP~if~~~~  156 (282)
                      ||.+.+.+...|+        |+||.+++++... +|+|+||||.|++|..+.+. ++ +|+||||||||-.|||| .+|
T Consensus       428 GRSRqQRYTK~An--------WdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIF-tEI  498 (614)
T KOG2333|consen  428 GRSRQQRYTKSAN--------WDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIF-TEI  498 (614)
T ss_pred             CchhhhhhhcccC--------hHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHh-hhh
Confidence            9998777664444        8888888876544 99999999999999888877 44 99999999999999997 777


Q ss_pred             Hhh-hhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc
Q 023442          157 DTA-IYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFH  207 (282)
Q Consensus       157 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~  207 (282)
                      +.. .+. . ++.+|.++++.|..|+   ++|||++..++...|++++.|+.
T Consensus       499 keqq~wD-~-sSteRldiL~df~nyG---LeHWGSDt~GVetTRRFlLE~lS  545 (614)
T KOG2333|consen  499 KEQQHWD-I-SSTERLDILKDFCNYG---LEHWGSDTKGVETTRRFLLEFLS  545 (614)
T ss_pred             hhhhcCC-c-cchHHHHHHHHHHhhh---hhhcCCccccHHHHHHHHHHHHH
Confidence            653 232 2 3346667777666654   89999988999999999987754

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=99.97  E-value=1.9e-30  Score=230.84  Aligned_cols=129  Identities=20%  Similarity=0.235  Sum_probs=110.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++++++|+ |++|+++|+++.++++++++ .++|||||+|+|+++.+ ..+    +++.++++|+++|+||.+
T Consensus        98 iN~gCP~~~v~~~g~-G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~~~----~a~~l~~aGad~i~Vd~~  170 (231)
T TIGR00736        98 INAHCRQPEITEIGI-GQELLKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLD-ELI----DALNLVDDGFDGIHVDAM  170 (231)
T ss_pred             EECCCCcHHHcCCCC-chhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcch-HHH----HHHHHHHcCCCEEEEeeC
Confidence            799999999998886 99999999999999999995 48999999999986522 222    456789999999999975


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .   .|.        +...|+.++++++...++|||+||||+|++|+.+++++|||+||+|||++.+
T Consensus       171 ~---~g~--------~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       171 Y---PGK--------PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG  226 (231)
T ss_pred             C---CCC--------chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence            4   332        1235999999887643599999999999999999999999999999999976

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=99.96  E-value=1.5e-29  Score=226.09  Aligned_cols=129  Identities=23%  Similarity=0.340  Sum_probs=107.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++++++|. |++|+++|+++.+|++++++ +++|||||+|+||+  .+..+    +++.++++|+|.|++|.+
T Consensus       103 lN~gCP~~~v~~~g~-G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~----la~~l~~aG~d~ihv~~~  174 (233)
T cd02911         103 INAHCRQPEMVEAGA-GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEE----LARLIEKAGADIIHVDAM  174 (233)
T ss_pred             EECCCCcHHHhcCCc-chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHH----HHHHHHHhCCCEEEECcC
Confidence            799999999998886 99999999999999999998 59999999999997  23333    356778999998766543


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      .   .|.         +.+|+.+++++   +++|||+||||+|++|+.+++++|||+|||||+  .|||+| +++
T Consensus       175 ~---~g~---------~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~~p~~~-~~~  231 (233)
T cd02911         175 D---PGN---------HADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVARA--SLPENI-EWL  231 (233)
T ss_pred             C---CCC---------CCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--CCchHH-HHh
Confidence            2   221         23477776664   589999999999999999999999999999999  999997 554

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=99.94  E-value=1.1e-26  Score=206.07  Aligned_cols=140  Identities=29%  Similarity=0.523  Sum_probs=116.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||++.+.+ ++||++++++++++.++++++++.+++||+||+|.||+..   +++.+ +++.+++.|++.|+||+|
T Consensus        86 ln~g~p~~~~~~-~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~-~~~~l~~~Gvd~i~v~~~  160 (231)
T cd02801          86 LNMGCPSPKVTK-GGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLE-LAKALEDAGASALTVHGR  160 (231)
T ss_pred             EeCCCCHHHHhC-CCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHH-HHHHHHHhCCCEEEECCC
Confidence            799999987774 6789999999999999999999999999999999999764   23333 355678899999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      +......        ++..|+.+.++++ .+++||++||||.|++|+.++++ +|||+||+||+++.|||+| +.+
T Consensus       161 ~~~~~~~--------~~~~~~~~~~i~~-~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~-~~~  226 (231)
T cd02801         161 TREQRYS--------GPADWDYIAEIKE-AVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLF-REI  226 (231)
T ss_pred             CHHHcCC--------CCCCHHHHHHHHh-CCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHH-Hhh
Confidence            8532111        2335888877766 46899999999999999999999 7999999999999999986 443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=99.90  E-value=1.9e-23  Score=193.00  Aligned_cols=135  Identities=24%  Similarity=0.377  Sum_probs=106.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+.+    + +|+.++++|+++.++++++++.+++||+||+|.+.+      ++.+ +++.++++|+|+|+||++
T Consensus       124 lN~~cP~~~----~-~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~------~~~~-~a~~l~~~G~d~i~v~nt  191 (300)
T TIGR01037       124 LNLSCPHVK----G-GGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT------DITE-IAKAAEEAGADGLTLINT  191 (300)
T ss_pred             EECCCCCCC----C-CccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh------hHHH-HHHHHHHcCCCEEEEEcc
Confidence            799999852    4 599999999999999999999999999999996443      2222 456778999999999965


Q ss_pred             Ccc-----c----------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           82 KAL-----L----------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        82 t~~-----~----------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +..     .          .|.+   +..+.|+.++.++++++. .++|||+||||.|++|+.+++++|||+||+||+++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~gg~s---g~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l  267 (300)
T TIGR01037       192 LRGMKIDIKTGKPILANKTGGLS---GPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVY  267 (300)
T ss_pred             CCccccccccCceeeCCCCcccc---chhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHh
Confidence            321     0          1111   112233345777777765 58999999999999999999999999999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      .|||+|
T Consensus       268 ~~p~~~  273 (300)
T TIGR01037       268 YRGFAF  273 (300)
T ss_pred             cCchHH
Confidence            999986

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.90  E-value=1.5e-23  Score=193.80  Aligned_cols=141  Identities=19%  Similarity=0.290  Sum_probs=112.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V---   78 (282)
                      ||+|||+. +.+++ +|+.|+++|+.+.+|++++++.+++||+||+|.+.+   ++.+    +++.++++|++.|++   
T Consensus       132 lN~sCP~~-~~~~~-~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~Gadgi~~~Nt  202 (299)
T cd02940         132 LNFSCPHG-MPERG-MGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNIT---DIRE----IARAAKEGGADGVSAINT  202 (299)
T ss_pred             EECCCCCC-CCCCC-CchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCch---hHHH----HHHHHHHcCCCEEEEecc
Confidence            79999996 56566 499999999999999999999999999999997543   2333    345678999999985   


Q ss_pred             ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                                        |+|+.. +|.+   ++.+.|..|+.++++.+.. .++|||+||||.|.+|+.+++.+|||+|
T Consensus       203 ~~~~~~id~~~~~~~~~~~~~~~~-gg~s---G~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V  278 (299)
T cd02940         203 VNSLMGVDLDGTPPAPGVEGKTTY-GGYS---GPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVV  278 (299)
T ss_pred             cccccccccccCCccccccCCCCc-Cccc---CCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChh
Confidence                              444422 2222   1234566799999988764 2799999999999999999999999999


Q ss_pred             EecHHhhh-CCccchhhh
Q 023442          140 MVGRAAYQ-NPWYTLGHV  156 (282)
Q Consensus       140 mIGRgal~-nP~if~~~~  156 (282)
                      |||||++. .|.+| ..+
T Consensus       279 ~i~ta~~~~g~~~~-~~i  295 (299)
T cd02940         279 QVCTAVMNQGFTIV-DDM  295 (299)
T ss_pred             eEceeecccCCcHH-HHH
Confidence            99999988 89986 443

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.6e-22  Score=187.76  Aligned_cols=215  Identities=18%  Similarity=0.278  Sum_probs=151.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      +|||||-...++.|. ||+|+.+|+.+..|+.++.+...+|||+|||+ .++.+.   +++.+. .+.+.|+.+|+||+|
T Consensus       112 iN~gCpK~fSi~~gm-gaalLt~~dkl~~IL~sLvk~~~vpvtckIR~-L~s~ed---tL~lv~-ri~~tgi~ai~vh~r  185 (477)
T KOG2334|consen  112 INMGCPKEFSIHGGM-GAALLTDPDKLVAILYSLVKGNKVPVTCKIRL-LDSKED---TLKLVK-RICATGIAAITVHCR  185 (477)
T ss_pred             ccCCCCCccccccCC-CchhhcCHHHHHHHHHHHHhcCcccceeEEEe-cCCccc---HHHHHH-HHHhcCCceEEEEee
Confidence            799999999997665 99999999999999999999999999999996 444332   233333 456899999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC---HHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT---VDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s---~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      |....-        ..|..-+++++++...+.||||.||++.+   +.|++...+ +|+|+|||+|++..||.+|..   
T Consensus       186 t~d~r~--------~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~---  254 (477)
T KOG2334|consen  186 TRDERN--------QEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFRE---  254 (477)
T ss_pred             ccccCC--------CCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeee---
Confidence            863221        12333566777766555699999999999   788888887 999999999999999999842   


Q ss_pred             hhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHH-HHHHhhHHHHHHHHHHH
Q 023442          158 TAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKA-DAAFQTCKTVKSFLEET  236 (282)
Q Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l-~~~~~~~~~~~~~~~~~  236 (282)
                         .|.    .++.++++.|++++...-++||....-+..+.   .....+.|..+.+...- ...+.+.-.+.++.+..
T Consensus       255 ---eG~----~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il---~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~  324 (477)
T KOG2334|consen  255 ---EGC----LSEKEVIREFLRLAVQYDNHYGNTKYCLQRIL---RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATL  324 (477)
T ss_pred             ---cCC----chHHHHHHHHHHHHHHHhhcccchhHHHHHHh---hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhh
Confidence               242    45678889999988877788887332222222   22233333322221110 12234555666666666


Q ss_pred             HHhCCCC
Q 023442          237 IVAIPDS  243 (282)
Q Consensus       237 ~~~~~~~  243 (282)
                      -.+++..
T Consensus       325 ~~el~~~  331 (477)
T KOG2334|consen  325 KRELDTP  331 (477)
T ss_pred             HHhhccc
Confidence            6555433

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=99.88  E-value=1.9e-22  Score=194.50  Aligned_cols=141  Identities=20%  Similarity=0.276  Sum_probs=113.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V---   78 (282)
                      ||+|||+ ++.+++. |+.++++|+.+.+|++++++.+++||+||+|...++   +.+    +++.++++|+++|++   
T Consensus       132 lN~scP~-~~~~~~~-g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~---~~~----~a~~~~~~Gadgi~~~Nt  202 (420)
T PRK08318        132 LNFGCPH-GMSERGM-GSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITD---IRE----PARAAKRGGADAVSLINT  202 (420)
T ss_pred             EeCCCCC-CccccCC-cccccCCHHHHHHHHHHHHhccCCcEEEEcCCCccc---HHH----HHHHHHHCCCCEEEEecc
Confidence            8999999 6776664 999999999999999999999999999999964432   333    456778999999993   


Q ss_pred             ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442           79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH  138 (282)
Q Consensus        79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~Dg  138 (282)
                                        |+|+. .+|.|   +..+.|+.|+.++++.+..  .++|||+||||+|.+|+.+++.+|||+
T Consensus       203 ~~~~~~id~~~~~~~p~~~~~~~-~gg~S---G~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~  278 (420)
T PRK08318        203 INSITGVDLDRMIPMPIVNGKSS-HGGYC---GPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGT  278 (420)
T ss_pred             cCccccccccccCCCceecCCCC-ccccc---chhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCCh
Confidence                              44432 12332   2345677899999998764  279999999999999999999999999


Q ss_pred             EEecHHhhh-CCccchhhh
Q 023442          139 VMVGRAAYQ-NPWYTLGHV  156 (282)
Q Consensus       139 VmIGRgal~-nP~if~~~~  156 (282)
                      ||||||++. .|.++ ..+
T Consensus       279 Vqi~ta~~~~gp~ii-~~I  296 (420)
T PRK08318        279 VQVCTAAMQYGFRIV-EDM  296 (420)
T ss_pred             heeeeeeccCCchhH-HHH
Confidence            999999988 78875 443

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=99.86  E-value=1.9e-21  Score=179.46  Aligned_cols=144  Identities=21%  Similarity=0.254  Sum_probs=105.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhC--CCCEEEE-
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFII-   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~--Gv~~i~V-   78 (282)
                      ||+|||+  +.  +  +..+..+|+.+.+|+++|++.+++||+||+|.+++.    .++.+ +++.+.++  |++.|++ 
T Consensus       125 lN~sCPn--~~--~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~----~~~~~-~a~~l~~~~~G~~gi~~~  193 (294)
T cd04741         125 LNLSCPN--VP--G--KPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDP----AQFDT-LAEALNAFACPISFITAT  193 (294)
T ss_pred             EECCCCC--CC--C--cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCH----HHHHH-HHHHHhccccCCcEEEEE
Confidence            8999998  22  2  335778999999999999999999999999998753    22333 34556677  9999994 


Q ss_pred             ---------ec-CCc-cc---CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           79 ---------HS-RKA-LL---NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        79 ---------H~-Rt~-~~---~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                               |. |+. ..   ++.++..++.+.|..+..++++.+... ++|||+||||.|.+|+.+++.+|||+||+|+
T Consensus       194 Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t  273 (294)
T cd04741         194 NTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT  273 (294)
T ss_pred             ccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence                     53 221 11   111112223344445566677766543 5999999999999999999999999999999


Q ss_pred             Hhhh-CCccchhhhH
Q 023442          144 AAYQ-NPWYTLGHVD  157 (282)
Q Consensus       144 gal~-nP~if~~~~~  157 (282)
                      |++. +||+| .++.
T Consensus       274 a~~~~gp~~~-~~i~  287 (294)
T cd04741         274 ALGKEGPKVF-ARIE  287 (294)
T ss_pred             hhhhcCchHH-HHHH
Confidence            9995 99996 4443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=99.86  E-value=2.4e-21  Score=182.42  Aligned_cols=153  Identities=19%  Similarity=0.153  Sum_probs=114.0

Q ss_pred             ccc--cCC-----chhhc-ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC----CcHHHHHHHHHHHHH
Q 023442            2 PSC--GCP-----SPKVA-GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSS   69 (282)
Q Consensus         2 lN~--GCP-----~~~v~-~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le   69 (282)
                      ||+  ||.     ++.+. ++++||++|++|.+++.+|+++|+++++.+++||+|+++++.    .+.++..+ +++.++
T Consensus       160 ih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~-~~~~l~  238 (343)
T cd04734         160 LQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALE-IAARLA  238 (343)
T ss_pred             EccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHH-HHHHHH
Confidence            677  764     55454 458999999999999999999999999999999999998763    23556555 567888


Q ss_pred             hCC-CCEEEEecCCcccC-CCCc-CCcCCCC-CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHH
Q 023442           70 LSP-TRHFIIHSRKALLN-GISP-AENRTIP-PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA  144 (282)
Q Consensus        70 ~~G-v~~i~VH~Rt~~~~-G~~~-ad~~~i~-~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRg  144 (282)
                      ++| +|+|+||+++.... +... ......+ ...|+.+..+++. .++||++||+|.|+++++++++ ++||+||+||+
T Consensus       239 ~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~  317 (343)
T cd04734         239 AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRA  317 (343)
T ss_pred             hcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHH
Confidence            998 89999986542111 0000 0000111 2236666666554 5899999999999999999999 78999999999


Q ss_pred             hhhCCccchhhhH
Q 023442          145 AYQNPWYTLGHVD  157 (282)
Q Consensus       145 al~nP~if~~~~~  157 (282)
                      ++.|||++ ..+.
T Consensus       318 ~ladP~l~-~k~~  329 (343)
T cd04734         318 HIADPHLV-AKAR  329 (343)
T ss_pred             hHhCccHH-HHHH
Confidence            99999986 5443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.85  E-value=6.3e-21  Score=175.05  Aligned_cols=143  Identities=21%  Similarity=0.269  Sum_probs=109.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||...     . |..++++++++.++++++++.+++||+||++.+++.    +++.+ +++.++++|+|+|++|++
T Consensus       130 lN~~cP~~~-----~-~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~----~~~~~-~a~~l~~~Gad~i~~~~~  198 (289)
T cd02810         130 LNLSCPNVG-----G-GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL----EDIVE-LAKAAERAGADGLTAINT  198 (289)
T ss_pred             EEcCCCCCC-----C-CcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCH----HHHHH-HHHHHHHcCCCEEEEEcc
Confidence            799999831     2 456899999999999999999999999999987653    23333 455678999999999987


Q ss_pred             CcccC------------CCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           82 KALLN------------GISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        82 t~~~~------------G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      +....            +.....+..+.+..+++++++++..+ ++|||++|||+|++|+.++++.|||+||+||+++.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~  278 (289)
T cd02810         199 ISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWD  278 (289)
T ss_pred             cCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhc
Confidence            53110            00000111223445777888877654 899999999999999999999999999999999999


Q ss_pred             -Cccchhhh
Q 023442          149 -PWYTLGHV  156 (282)
Q Consensus       149 -P~if~~~~  156 (282)
                       |++| .++
T Consensus       279 GP~~~-~~i  286 (289)
T cd02810         279 GPDVI-RKI  286 (289)
T ss_pred             CccHH-HHH
Confidence             9996 444

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=99.85  E-value=2e-20  Score=173.02  Aligned_cols=135  Identities=21%  Similarity=0.361  Sum_probs=107.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||+.   . ++ |..+.++++++.+++++|++.+++||+||++...+      ++.+ +++.++++|+|.|+++.+
T Consensus       124 lN~~cP~~---~-~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~------~~~~-~a~~l~~~G~d~i~~~nt  191 (301)
T PRK07259        124 LNISCPNV---K-HG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT------DIVE-IAKAAEEAGADGLSLINT  191 (301)
T ss_pred             EECCCCCC---C-CC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch------hHHH-HHHHHHHcCCCEEEEEcc
Confidence            79999983   2 33 78899999999999999999999999999986432      2222 456778999999998654


Q ss_pred             Ccc---------------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           82 KAL---------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        82 t~~---------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +..               ..|.   .+..+.|..+++++++.+. .++|||++|||.|++|+.++++.|||+||+||+++
T Consensus       192 ~~g~~~~~~~~~~~~~~~~gg~---sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll  267 (301)
T PRK07259        192 LKGMAIDIKTRKPILANVTGGL---SGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANF  267 (301)
T ss_pred             ccccccccccCceeecCCcCcc---CCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHh
Confidence            311               0122   1223455678888888765 58999999999999999999999999999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      .+|++|
T Consensus       268 ~~P~~~  273 (301)
T PRK07259        268 YDPYAF  273 (301)
T ss_pred             cCcHHH
Confidence            999986

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=99.84  E-value=4e-20  Score=170.48  Aligned_cols=135  Identities=24%  Similarity=0.363  Sum_probs=106.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+.    ++. |+.++++|+++.++++++++.+++||+||++...+   +..+    +++.++++|+|.|+++.+
T Consensus       121 lN~~cP~~----~~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~---~~~~----~a~~~~~~G~d~i~~~nt  188 (296)
T cd04740         121 LNISCPNV----KGG-GMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT---DIVE----IARAAEEAGADGLTLINT  188 (296)
T ss_pred             EECCCCCC----CCC-cccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch---hHHH----HHHHHHHcCCCEEEEECC
Confidence            79999983    233 88899999999999999999999999999986432   2223    345678999999998644


Q ss_pred             Ccc---------------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           82 KAL---------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        82 t~~---------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +..               ..|.+   ...+.|..+++++++.+. .++|||+||||.|++|+.++++.|||+||+||+++
T Consensus       189 ~~g~~~~~~~~~~~~~~~~gg~s---g~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l  264 (296)
T cd04740         189 LKGMAIDIETRKPILGNVTGGLS---GPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANF  264 (296)
T ss_pred             CcccccccccCceeecCCcceec---CcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhh
Confidence            311               01221   123345567888887765 48999999999999999999999999999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      .+||+|
T Consensus       265 ~~p~~~  270 (296)
T cd04740         265 VDPEAF  270 (296)
T ss_pred             cChHHH
Confidence            999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=99.82  E-value=4.4e-20  Score=172.79  Aligned_cols=139  Identities=18%  Similarity=0.211  Sum_probs=107.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-----ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF   76 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-----ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i   76 (282)
                      ||++||+..       |...+++++.+.+++++|++.++     +||+||++.+++.    +++. .+++.++++|+|+|
T Consensus       166 lN~scP~~~-------g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~----~~~~-~ia~~l~~aGad~I  233 (327)
T cd04738         166 VNVSSPNTP-------GLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSD----EELE-DIADVALEHGVDGI  233 (327)
T ss_pred             EECCCCCCC-------ccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCH----HHHH-HHHHHHHHcCCcEE
Confidence            899999731       33348999999999999999886     9999999987653    2333 34667889999999


Q ss_pred             EEecCCccc------------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           77 IIHSRKALL------------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        77 ~VH~Rt~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      ++|+|+...            .|.+   +..+.+..|+.++++++... ++|||++|||.|++|+.+++.+|||+|||||
T Consensus       234 ~~~n~~~~~~~~~~~~~~~~~gG~s---G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~  310 (327)
T cd04738         234 IATNTTISRPGLLRSPLANETGGLS---GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYT  310 (327)
T ss_pred             EEECCcccccccccccccCCCCccC---ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccH
Confidence            999986321            1221   12233455788888877543 7999999999999999999999999999999


Q ss_pred             HhhhC-Cccchhhh
Q 023442          144 AAYQN-PWYTLGHV  156 (282)
Q Consensus       144 gal~n-P~if~~~~  156 (282)
                      +++.+ ||+| .++
T Consensus       311 ~~~~~gP~~~-~~i  323 (327)
T cd04738         311 GLVYEGPGLV-KRI  323 (327)
T ss_pred             HHHhhCcHHH-HHH
Confidence            99875 9986 444

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.82  E-value=4e-20  Score=174.18  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=108.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-----ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF   76 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-----ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i   76 (282)
                      ||++||..+    +   ....++++.+.+|+++|++.++     +||+||++.+++.    +++.+ +++.++++|+|+|
T Consensus       175 lN~scP~~~----g---~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~----~~~~~-ia~~l~~~Gadgi  242 (344)
T PRK05286        175 VNISSPNTP----G---LRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSD----EELDD-IADLALEHGIDGV  242 (344)
T ss_pred             EEccCCCCC----C---cccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCH----HHHHH-HHHHHHHhCCcEE
Confidence            799999742    2   2348999999999999999987     9999999976553    23332 4667889999999


Q ss_pred             EEecCCccc------------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           77 IIHSRKALL------------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        77 ~VH~Rt~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      ++|+|+...            .|.+   +..+.+..|+.++++.+... ++|||++|||.|++|+.+++..|||+|||||
T Consensus       243 ~~~nt~~~~~~~~~~~~~~~~gg~S---G~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~  319 (344)
T PRK05286        243 IATNTTLSRDGLKGLPNADEAGGLS---GRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYS  319 (344)
T ss_pred             EEeCCccccccccccccCCCCCCcc---cHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHH
Confidence            999987321            1221   12234556888888877533 7999999999999999999999999999999


Q ss_pred             Hhhh-CCccchhhh
Q 023442          144 AAYQ-NPWYTLGHV  156 (282)
Q Consensus       144 gal~-nP~if~~~~  156 (282)
                      +++. +||+| .++
T Consensus       320 ~~~~~gP~~~-~~i  332 (344)
T PRK05286        320 GLIYEGPGLV-KEI  332 (344)
T ss_pred             HHHHhCchHH-HHH
Confidence            9976 59986 443

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=99.80  E-value=4.1e-19  Score=166.87  Aligned_cols=149  Identities=12%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             cccc---------CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCC-CC-CCcHHHHHHHHHHHHHh
Q 023442            2 PSCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV-DD-HDSYNQLCDFIYKVSSL   70 (282)
Q Consensus         2 lN~G---------CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~-d~-~~~~~e~~~~v~~~le~   70 (282)
                      ||+|         ||... .+++.||++|++|.+++.||+++|+++++.||++|++..- .. ..+.++..+ +++.+++
T Consensus       161 ih~ahGyLl~qFlSp~~N-~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~-i~~~l~~  238 (337)
T PRK13523        161 IHGAHGYLINEFLSPLSN-KRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQ-YAKWMKE  238 (337)
T ss_pred             EccccchHHHHhcCCccC-CcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHH-HHHHHHH
Confidence            6888         88642 3468899999999999999999999999999999999621 11 123455554 5667889


Q ss_pred             CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442           71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus        71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      +|+|+|+||+++... .  +.+  ..+...|+...++++ ..++||+++|+|.|+++++++++ .+||+||+||+++.||
T Consensus       239 ~gvD~i~vs~g~~~~-~--~~~--~~~~~~~~~~~~ik~-~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP  312 (337)
T PRK13523        239 QGVDLIDVSSGAVVP-A--RID--VYPGYQVPFAEHIRE-HANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNP  312 (337)
T ss_pred             cCCCEEEeCCCCCCC-C--CCC--CCccccHHHHHHHHh-hcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCc
Confidence            999999999986321 0  001  011113555555554 46899999999999999999999 6699999999999999


Q ss_pred             ccchhhhHhh
Q 023442          150 WYTLGHVDTA  159 (282)
Q Consensus       150 ~if~~~~~~~  159 (282)
                      +++ +.+.+.
T Consensus       313 ~~~-~k~~~~  321 (337)
T PRK13523        313 YFP-RIAAKE  321 (337)
T ss_pred             cHH-HHHHHH
Confidence            985 555543

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=99.79  E-value=1e-18  Score=164.24  Aligned_cols=145  Identities=14%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             ccccC-------Cchhh-cccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEec------CCCCCCCcHHHHHHHHH
Q 023442            2 PSCGC-------PSPKV-AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCR------IGVDDHDSYNQLCDFIY   65 (282)
Q Consensus         2 lN~GC-------P~~~v-~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR------~G~d~~~~~~e~~~~v~   65 (282)
                      ||+||       .+|.. .+++.||++|++|++++.++|++|++++  ++||++|++      .||+    .++.++ ++
T Consensus       168 ih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~----~eea~~-ia  242 (338)
T cd04733         168 IHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFT----EEDALE-VV  242 (338)
T ss_pred             EchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCC----HHHHHH-HH
Confidence            78998       33333 3568899999999999999999999998  589999997      3453    334444 56


Q ss_pred             HHHHhCCCCEEEEecCCcccCCCC-cCCcC-CC-CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGIS-PAENR-TI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~-~ad~~-~i-~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +.++++|+|+|.||+|+....... ..+.. .. +...++...++++. +++||+++|+|.|+++++++++ .+||+||+
T Consensus       243 ~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l  321 (338)
T cd04733         243 EALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGAVDGIGL  321 (338)
T ss_pred             HHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence            678999999999999874211110 00000 01 11124455566554 6899999999999999999999 67999999


Q ss_pred             cHHhhhCCccc
Q 023442          142 GRAAYQNPWYT  152 (282)
Q Consensus       142 GRgal~nP~if  152 (282)
                      ||+++.|||++
T Consensus       322 gR~~iadP~~~  332 (338)
T cd04733         322 ARPLALEPDLP  332 (338)
T ss_pred             ChHhhhCccHH
Confidence            99999999985

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=99.76  E-value=9.6e-18  Score=160.13  Aligned_cols=140  Identities=16%  Similarity=0.142  Sum_probs=103.1

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecC-----CCCC-----------CCcHHHHHHHHHHHHHhCCCC
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-----GVDD-----------HDSYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~-----G~d~-----------~~~~~e~~~~v~~~le~~Gv~   74 (282)
                      +++.||++|++|++++.+|+++|++++  ++||++|++.     |++.           .-+.++..+ +++.++++|+|
T Consensus       189 RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~-~~~~l~~~gvD  267 (382)
T cd02931         189 RTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLK-AAKILEEAGYD  267 (382)
T ss_pred             CCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHH-HHHHHHHhCCC
Confidence            457799999999999999999999998  6799999984     2211           113455554 56778899999


Q ss_pred             EEEEecCCcccCC-CCcCCcCCCCCcc-HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442           75 HFIIHSRKALLNG-ISPAENRTIPPLK-YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        75 ~i~VH~Rt~~~~G-~~~ad~~~i~~~~-~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      +|+||+++..... ..+..  ..++.. ++.+..+++ ..++||++||+|+++++++++++ .+||+||+||+++.||++
T Consensus       268 ~l~vs~g~~~~~~~~~~~~--~~~~~~~~~~~~~ik~-~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l  344 (382)
T cd02931         268 ALDVDAGSYDAWYWNHPPM--YQKKGMYLPYCKALKE-VVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDV  344 (382)
T ss_pred             EEEeCCCCCcccccccCCc--cCCcchhHHHHHHHHH-HCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccH
Confidence            9999988732111 00111  112222 344445544 46899999999999999999999 679999999999999998


Q ss_pred             chhhhH
Q 023442          152 TLGHVD  157 (282)
Q Consensus       152 f~~~~~  157 (282)
                      + +.+.
T Consensus       345 ~-~k~~  349 (382)
T cd02931         345 V-NKIR  349 (382)
T ss_pred             H-HHHH
Confidence            6 5443

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=99.76  E-value=3.5e-18  Score=161.56  Aligned_cols=144  Identities=15%  Similarity=0.087  Sum_probs=107.3

Q ss_pred             cCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC----ccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEE
Q 023442            5 GCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN----VPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHF   76 (282)
Q Consensus         5 GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~----ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i   76 (282)
                      .||.... +++.||++|++|.+++.||+++|+++++    .++.|++|+++++.    .+.++..+ +++.++++|+|+|
T Consensus       175 lsp~~N~-R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~-i~~~L~~~GvD~I  252 (353)
T cd04735         175 FSPHSNR-RTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLA-LVDKLADKGLDYL  252 (353)
T ss_pred             cCCccCC-CCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHH-HHHHHHHcCCCEE
Confidence            4886433 4688999999999999999999999987    67888899887653    13556554 5677899999999


Q ss_pred             EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhh
Q 023442           77 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGH  155 (282)
Q Consensus        77 ~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~  155 (282)
                      +||+++......      ..++..+..+..+++.. .++|||+||+|+|+++++++++.|||+||+||+++.||+++ ..
T Consensus       253 ~Vs~g~~~~~~~------~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~-~k  325 (353)
T cd04735         253 HISLWDFDRKSR------RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDPDWV-EK  325 (353)
T ss_pred             EeccCccccccc------cCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHH-HH
Confidence            999764311100      01111234444443332 37999999999999999999998899999999999999985 54


Q ss_pred             hH
Q 023442          156 VD  157 (282)
Q Consensus       156 ~~  157 (282)
                      +.
T Consensus       326 ~~  327 (353)
T cd04735         326 IK  327 (353)
T ss_pred             HH
Confidence            43

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.75  E-value=1.6e-17  Score=156.17  Aligned_cols=139  Identities=18%  Similarity=0.125  Sum_probs=106.5

Q ss_pred             ccccC---------C-chhhcccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCCC-----CCCCcHHHHHHHHH
Q 023442            2 PSCGC---------P-SPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCDFIY   65 (282)
Q Consensus         2 lN~GC---------P-~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~-----d~~~~~~e~~~~v~   65 (282)
                      ||+||         | .++.  ++.||++|.+|.+++.+|+++|+++++. ||++|++..-     ....+.++..+ ++
T Consensus       171 ih~ahGyLl~qFlSp~~N~R--~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~-~~  247 (338)
T cd02933         171 IHGANGYLIDQFLRDGSNKR--TDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSY-LA  247 (338)
T ss_pred             EccccchhHHHhcCCccCCC--CCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHH-HH
Confidence            78999         6 4444  4779999999999999999999999854 8999988521     01124456554 56


Q ss_pred             HHHHhCCCCEEEE-ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442           66 KVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus        66 ~~le~~Gv~~i~V-H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      +.+++.|+|+|.| |+++....          +...++...++++. .++||+++|+|+ +++++++++ .+||+||+||
T Consensus       248 ~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR  315 (338)
T cd02933         248 KELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADGKADLVAFGR  315 (338)
T ss_pred             HHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCH
Confidence            7889999999999 56543211          12236666666554 689999999997 999999999 6799999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      +++.|||++ ..+
T Consensus       316 ~~ladP~~~-~k~  327 (338)
T cd02933         316 PFIANPDLV-ERL  327 (338)
T ss_pred             hhhhCcCHH-HHH
Confidence            999999985 544

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.75  E-value=1.7e-17  Score=154.71  Aligned_cols=144  Identities=15%  Similarity=0.109  Sum_probs=106.6

Q ss_pred             CCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCC--CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~--~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||.-. .+++.||++++++++++.+++++|++.+  ++||+||++.+....  .+.++..+ +++.+++.|+|+|+||++
T Consensus       173 sp~~n-~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~-la~~l~~~G~d~i~vs~g  250 (327)
T cd02803         173 SPYTN-KRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIE-IAKALEEAGVDALHVSGG  250 (327)
T ss_pred             Ccccc-CCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCC
Confidence            67532 4578899999999999999999999998  789999998642211  13445444 466788999999999988


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +..............++..++.+..+++. .++||+++|+|.|+++++++++ .+||+|++||+++.||+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~  321 (327)
T cd02803         251 SYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLP  321 (327)
T ss_pred             CCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHH
Confidence            64321110000001123345666666554 5899999999999999999999 6899999999999999985

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=99.74  E-value=1.9e-17  Score=156.54  Aligned_cols=147  Identities=15%  Similarity=0.171  Sum_probs=105.8

Q ss_pred             CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||.. -.+++.||++|+++++++.+|+++|+++++.++.|++|+++.+.    .+.++..+ +++.++++|+|+|+|+..
T Consensus       169 sp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~d~i~vs~g  246 (353)
T cd02930         169 APRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGADILNTGIG  246 (353)
T ss_pred             CCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCC
Confidence            7752 23467899999999999999999999999888888888876542    24455554 567889999999999532


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      ..  ....+......++..|..+.+.+++..++||+++|+|.++++++++++ ++||+||+||+++.|||++ +.+.
T Consensus       247 ~~--e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~-~k~~  320 (353)
T cd02930         247 WH--EARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFV-AKAA  320 (353)
T ss_pred             cC--CCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHH-HHHH
Confidence            10  000000000112223443333334446999999999999999999999 6799999999999999986 5443

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=99.73  E-value=2.8e-17  Score=154.39  Aligned_cols=143  Identities=15%  Similarity=0.169  Sum_probs=105.1

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC-CC-CCCcHHHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VD-DHDSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G-~d-~~~~~~e~~~~v~~~l   68 (282)
                      ||+||         |... .+++.||++|++|++++.+++++|++++  ++||++|++.. +. ...+.++..+ +++.+
T Consensus       173 i~~~~gyLl~qFlsp~~N-~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~-ia~~L  250 (336)
T cd02932         173 IHAAHGYLLHQFLSPLSN-KRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE-LAKAL  250 (336)
T ss_pred             EccccccHHHHhcCCccC-CCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH-HHHHH
Confidence            78887         6543 3567899999999999999999999999  78999999841 11 1112445444 46678


Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCC-CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTI-PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i-~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      ++.|+|+|.||.....  ..   ..... +...++...++++. .++||+++|+|.|+++++++++ ..||+||+||+++
T Consensus       251 e~~gvd~iev~~g~~~--~~---~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i  324 (336)
T cd02932         251 KELGVDLIDVSSGGNS--PA---QKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLVALGRELL  324 (336)
T ss_pred             HHcCCCEEEECCCCCC--cc---cccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHH
Confidence            8999999999953211  00   00011 11124455556554 5899999999999999999999 5599999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      .||++.
T Consensus       325 ~dP~~~  330 (336)
T cd02932         325 RNPYWP  330 (336)
T ss_pred             hCccHH
Confidence            999975

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=99.72  E-value=6e-17  Score=151.56  Aligned_cols=134  Identities=16%  Similarity=0.151  Sum_probs=101.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||..  . .+.+|+.+   ++.+.++++++++.+++||+||++..+++   ..+    +++.++++|+++|++|.|
T Consensus       131 lN~s~~~~--~-~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~~~~---~~~----~a~~l~~~Gadgi~~~nt  197 (325)
T cd04739         131 LNIYALPT--D-PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPFFSA---LAH----MAKQLDAAGADGLVLFNR  197 (325)
T ss_pred             EeCCCCCC--C-CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCCccC---HHH----HHHHHHHcCCCeEEEEcC
Confidence            79999642  1 24456654   57899999999999999999999975432   333    345678999999999998


Q ss_pred             Cccc------------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC-
Q 023442           82 KALL------------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-  148 (282)
Q Consensus        82 t~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n-  148 (282)
                      +...            .|.|   +..+.|..+++++++.+. .++|||++|||.|.+|+.+++..|||+||+|++++.+ 
T Consensus       198 ~~~~~id~~~~~~~~~~glS---G~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g  273 (325)
T cd04739         198 FYQPDIDLETLEVVPNLLLS---SPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHG  273 (325)
T ss_pred             cCCCCccccccceecCCCcC---CccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC
Confidence            6210            0111   123344557777777764 5899999999999999999999999999999999985 


Q ss_pred             Cccc
Q 023442          149 PWYT  152 (282)
Q Consensus       149 P~if  152 (282)
                      |.++
T Consensus       274 p~~~  277 (325)
T cd04739         274 PDYI  277 (325)
T ss_pred             chHH
Confidence            9875

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=99.72  E-value=3.2e-17  Score=155.89  Aligned_cols=147  Identities=14%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             ccccC---------Cc-hhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC------CcHHHHHHHHH
Q 023442            2 PSCGC---------PS-PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH------DSYNQLCDFIY   65 (282)
Q Consensus         2 lN~GC---------P~-~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~------~~~~e~~~~v~   65 (282)
                      ||+||         |. ++  +++.||++|++|.+++.||+++|+++++.++.|++|++.++.      .+.++..+ ++
T Consensus       169 ih~ahGyLl~QFlSp~~N~--RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~-~~  245 (370)
T cd02929         169 VYAAHGYLPLQFLLPRYNK--RTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVE-FV  245 (370)
T ss_pred             EcccccchHHHhhCccccC--CccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHH-HH
Confidence            78899         65 33  357899999999999999999999999888888889876542      13555554 45


Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~-~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      +.+++. +|++.|+.......+..   .+..++. .++...++++ ..++||+++|+|.++++++++++ .+||+||+||
T Consensus       246 ~~l~~~-~D~i~vs~g~~~~~~~~---~~~~~~~~~~~~~~~ik~-~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR  320 (370)
T cd02929         246 EMLDEL-PDLWDVNVGDWANDGED---SRFYPEGHQEPYIKFVKQ-VTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAAR  320 (370)
T ss_pred             HHHHhh-CCEEEecCCCccccccc---cccCCccccHHHHHHHHH-HCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeech
Confidence            566654 89999986432111110   0111111 2444555555 46899999999999999999999 6799999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      +++.|||++ ..++
T Consensus       321 ~~ladP~l~-~k~~  333 (370)
T cd02929         321 PSIADPFLP-KKIR  333 (370)
T ss_pred             HhhhCchHH-HHHH
Confidence            999999986 5443

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.72  E-value=5.9e-17  Score=167.02  Aligned_cols=149  Identities=16%  Similarity=0.195  Sum_probs=109.4

Q ss_pred             cccc---------CCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecC-CCCCC-CcHHHHHHHHHHHH
Q 023442            2 PSCG---------CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-GVDDH-DSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~G---------CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~-G~d~~-~~~~e~~~~v~~~l   68 (282)
                      ||+|         ||.... +++.||++|+++.+++.||+++|++++  ++||++|++. +|.+. .+.++... +++.+
T Consensus       570 ih~ahGyLl~qFlsp~~N~-RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~-~~~~l  647 (765)
T PRK08255        570 LHCAHGYLLSSFISPLTNQ-RTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVE-IARAF  647 (765)
T ss_pred             EecccchHHHHhcCCCCCC-CCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHH-HHHHH
Confidence            7888         998543 468899999999999999999999987  5899999996 34432 23455554 56788


Q ss_pred             HhCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      +++|+|+|+||+ ++....  .+    ..++..+..+.+.+++..++||++||+|+++++++++++ ++||+||+||+++
T Consensus       648 ~~~g~d~i~vs~g~~~~~~--~~----~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l  721 (765)
T PRK08255        648 KAAGADLIDVSSGQVSKDE--KP----VYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHL  721 (765)
T ss_pred             HhcCCcEEEeCCCCCCcCC--CC----CcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence            999999999994 442111  00    011111222223334446899999999999999999999 7899999999999


Q ss_pred             hCCccchhhhHh
Q 023442          147 QNPWYTLGHVDT  158 (282)
Q Consensus       147 ~nP~if~~~~~~  158 (282)
                      .||++.++.+++
T Consensus       722 ~dP~~~~~~~~~  733 (765)
T PRK08255        722 ADPAWTLHEAAE  733 (765)
T ss_pred             hCccHHHHHHHH
Confidence            999544455544

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.71  E-value=6.2e-17  Score=145.48  Aligned_cols=130  Identities=15%  Similarity=0.337  Sum_probs=101.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccE---EEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF   76 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipv---svKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i   76 (282)
                      |++||.  +++    .|++++++|+++.++++.+.+.+  ++++   .+|++ ||++..  .+..+ +++.+++.|++.|
T Consensus        94 l~~Ga~--kvv----iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~--~~~~~-~~~~l~~~G~~~i  163 (241)
T PRK14024         94 LATGCA--RVN----IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDG--GDLWE-VLERLDSAGCSRY  163 (241)
T ss_pred             HHCCCC--EEE----ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecC--ccHHH-HHHHHHhcCCCEE
Confidence            678885  454    49999999999999999997765  4566   67775 898632  12233 3456789999999


Q ss_pred             EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEecHHhhhCCcc
Q 023442           77 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        77 ~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIGRgal~nP~i  151 (282)
                      ++|+|++..++.. .        +|+.+.++++. .++|||+||||.|++|+.++.+   +||||||+||+++.++.-
T Consensus       164 iv~~~~~~g~~~G-~--------d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~  231 (241)
T PRK14024        164 VVTDVTKDGTLTG-P--------NLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT  231 (241)
T ss_pred             EEEeecCCCCccC-C--------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence            9999986432221 1        48888888775 5899999999999999999864   699999999999999864

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.70  E-value=2.2e-16  Score=148.24  Aligned_cols=134  Identities=15%  Similarity=0.137  Sum_probs=100.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||..+.   +..|..   .++.+.++++++++.+++||+||++.++++   ..+    +++.++++|+|+|++|.|
T Consensus       133 lN~scpp~~~---~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~~~~---~~~----~a~~l~~~G~dgI~~~n~  199 (334)
T PRK07565        133 LNIYYLPTDP---DISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPYFSN---LAN----MAKRLDAAGADGLVLFNR  199 (334)
T ss_pred             EeCCCCCCCC---CCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCCchh---HHH----HHHHHHHcCCCeEEEECC
Confidence            7999975432   223443   356788999999999999999999976532   222    456778999999999988


Q ss_pred             Cccc------------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC-
Q 023442           82 KALL------------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN-  148 (282)
Q Consensus        82 t~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n-  148 (282)
                      +...            .|.+   +..+.|..++.++++.+. .++|||++|||+|.+|+.+++.+|||+|||||+++.+ 
T Consensus       200 ~~~~~~d~~~~~~~~~~gls---g~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g  275 (334)
T PRK07565        200 FYQPDIDLETLEVVPGLVLS---TPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHG  275 (334)
T ss_pred             cCCCCcChhhcccccCCCCC---CchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhC
Confidence            5210            0111   122345556777777664 4899999999999999999999999999999999985 


Q ss_pred             Cccc
Q 023442          149 PWYT  152 (282)
Q Consensus       149 P~if  152 (282)
                      |.++
T Consensus       276 ~~~~  279 (334)
T PRK07565        276 PDYI  279 (334)
T ss_pred             cHHH
Confidence            8764

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=99.69  E-value=2.3e-16  Score=149.38  Aligned_cols=143  Identities=17%  Similarity=0.187  Sum_probs=105.7

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCC--C-----CCcHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVD--D-----HDSYNQLCDF   63 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d--~-----~~~~~e~~~~   63 (282)
                      ||++|         |.... +++.||++|.+|.+++.||+++|++++  ++||.||++. |+  +     ..+.+++.. 
T Consensus       163 ih~ahGyLl~qFLSp~~N~-RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~~~g~~~~e~~~-  239 (361)
T cd04747         163 LHGAHGYLIDQFFWAGTNR-RADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTARLADTPDELEA-  239 (361)
T ss_pred             EecccchHHHHhcCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-ccccccccCCCCCHHHHHH-
Confidence            78899         77544 468899999999999999999999998  5899999983 32  1     124556554 


Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC------------------CCH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI------------------NTV  125 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI------------------~s~  125 (282)
                      +++.+++.|+|+|.|..+.......        +...+.....+++ ..++||+++|+|                  +|+
T Consensus       240 ~~~~l~~~gvd~i~vs~g~~~~~~~--------~~~~~~~~~~~k~-~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~  310 (361)
T cd04747         240 LLAPLVDAGVDIFHCSTRRFWEPEF--------EGSELNLAGWTKK-LTGLPTITVGSVGLDGDFIGAFAGDEGASPASL  310 (361)
T ss_pred             HHHHHHHcCCCEEEecCCCccCCCc--------CccchhHHHHHHH-HcCCCEEEECCcccccccccccccccccccCCH
Confidence            4567889999998776542110000        1112444444444 468999999999                  699


Q ss_pred             HHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442          126 DEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       126 eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      ++++++++ .+||+||+||+++.|||++ ..+.
T Consensus       311 ~~a~~~l~~g~~D~V~~gR~~iadP~~~-~k~~  342 (361)
T cd04747         311 DRLLERLERGEFDLVAVGRALLSDPAWV-AKVR  342 (361)
T ss_pred             HHHHHHHHCCCCCeehhhHHHHhCcHHH-HHHH
Confidence            99999999 6799999999999999985 5543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=99.62  E-value=3.7e-15  Score=141.93  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||.....+ +. |+.+.++|+.+.+++++|++.+++||.||+...+++   +.    .+++.++++|++.|++..+
T Consensus       146 LNiSCPn~~~~r-~~-g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~---i~----~ia~aa~~~Gadgi~liNT  216 (385)
T PLN02495        146 INFSCPHGMPER-KM-GAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITD---IT----QPARVALKSGCEGVAAINT  216 (385)
T ss_pred             EECCCCCCCCcC-cc-chhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhh---HH----HHHHHHHHhCCCEEEEecc
Confidence            799999965443 43 899999999999999999999999999999864432   32    3456778999999998754


Q ss_pred             Ccc------cC-----------CCCcCCcCCCCCccHHHHHHHHhcCC-----CceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           82 KAL------LN-----------GISPAENRTIPPLKYEYYYALLRDFP-----DLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        82 t~~------~~-----------G~~~ad~~~i~~~~~~~i~~l~~~~~-----~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      +..      ..           +.+.--+..++|+....++++.+...     ++|||+.|||.|.+|+.+++..||+.|
T Consensus       217 ~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~V  296 (385)
T PLN02495        217 IMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTV  296 (385)
T ss_pred             cCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCce
Confidence            320      00           11111112344555555555655421     599999999999999999999999999


Q ss_pred             EecHHhhhC-Cccc
Q 023442          140 MVGRAAYQN-PWYT  152 (282)
Q Consensus       140 mIGRgal~n-P~if  152 (282)
                      +++.+++.+ |.++
T Consensus       297 Qv~Ta~~~~Gp~vi  310 (385)
T PLN02495        297 QVCTGVMMHGYPLV  310 (385)
T ss_pred             eEeeeeeecCcHHH
Confidence            999999988 8875

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=99.61  E-value=6.4e-15  Score=136.12  Aligned_cols=135  Identities=24%  Similarity=0.348  Sum_probs=108.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec-
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-   80 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~-   80 (282)
                      ||.+||.   + +|  |..|-++|+.+.++++++++.+++||.||+-..      ..++.+ +++.++++|+|.|++.- 
T Consensus       129 lNiScPn---t-~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~------~~di~~-iA~~~~~~g~Dgl~~~NT  195 (310)
T COG0167         129 LNISCPN---T-PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLAPN------ITDIDE-IAKAAEEAGADGLIAINT  195 (310)
T ss_pred             EEccCCC---C-CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeCCC------HHHHHH-HHHHHHHcCCcEEEEEee
Confidence            7999998   2 23  788888999999999999999999999999862      223333 56678899999999863 


Q ss_pred             ---CCc------------ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           81 ---RKA------------LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        81 ---Rt~------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                         |..            ...|.|   +..+.|.....++++.++. .++|||+.|||.|++||.+++..||+.|.|+.+
T Consensus       196 ~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Ta  272 (310)
T COG0167         196 TKSGMKIDLETKKPVLANETGGLS---GPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTA  272 (310)
T ss_pred             ccccccccccccccccCcCCCCcC---cccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeee
Confidence               221            122332   3467777788888888763 359999999999999999999999999999999


Q ss_pred             hhhC-Cccc
Q 023442          145 AYQN-PWYT  152 (282)
Q Consensus       145 al~n-P~if  152 (282)
                      ++.+ |++|
T Consensus       273 l~~~Gp~i~  281 (310)
T COG0167         273 LIYKGPGIV  281 (310)
T ss_pred             eeeeCchHH
Confidence            9988 9996

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.57  E-value=1.8e-14  Score=133.35  Aligned_cols=143  Identities=15%  Similarity=0.175  Sum_probs=95.8

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||++...              ...++++++++.+++||++|....      . +.    ++.++++|+|.|+||++
T Consensus       148 l~~~~p~~~~~--------------~~~~~i~~l~~~~~~pvivK~v~s------~-~~----a~~a~~~G~d~I~v~~~  202 (299)
T cd02809         148 LTVDTPVLGRR--------------LTWDDLAWLRSQWKGPLILKGILT------P-ED----ALRAVDAGADGIVVSNH  202 (299)
T ss_pred             EecCCCCCCCC--------------CCHHHHHHHHHhcCCCEEEeecCC------H-HH----HHHHHHCCCCEEEEcCC
Confidence            79999974221              234678888888899999997521      2 21    34567899999999765


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      .+....     +   .+..|+.+.++++... ++|||++|||+|..|+.+++..|||+||+||     ||++ ....   
T Consensus       203 gG~~~~-----~---g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~-----~~l~-~~~~---  265 (299)
T cd02809         203 GGRQLD-----G---APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR-----PFLY-GLAA---  265 (299)
T ss_pred             CCCCCC-----C---CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH-----HHHH-HHHh---
Confidence            422111     1   1224788888876543 6999999999999999999999999999999     5654 2211   


Q ss_pred             hCCCCCcccHHHHHHHHHHHHHHHHHhcCC
Q 023442          161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGN  190 (282)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~  190 (282)
                      .|.    ....+.++.+.+.++.+...+|.
T Consensus       266 ~g~----~~v~~~i~~l~~el~~~m~~~G~  291 (299)
T cd02809         266 GGE----AGVAHVLEILRDELERAMALLGC  291 (299)
T ss_pred             cCH----HHHHHHHHHHHHHHHHHHHHHCC
Confidence            121    12234555555555555555553

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.55  E-value=2e-14  Score=130.54  Aligned_cols=142  Identities=24%  Similarity=0.293  Sum_probs=94.0

Q ss_pred             CccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCC---------------CCCC---cHHHHHH
Q 023442            1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGV---------------DDHD---SYNQLCD   62 (282)
Q Consensus         1 ~lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~---------------d~~~---~~~e~~~   62 (282)
                      |+|.|||++.+. +|  |+++|++|+.+.    +|++++++||+.|+|.|+               |.++   ...++..
T Consensus        42 ~~~~~~psd~~~-~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~  114 (293)
T PRK04180         42 MALERVPADIRA-AG--GVARMADPKMIE----EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYH  114 (293)
T ss_pred             HHccCCCchHhh-cC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHH
Confidence            689999999876 44  899999999966    667777999999999873               0000   0111111


Q ss_pred             HHH-----------------HHHHhCCCCEEEEec--------------CC-----cccCCCCcCC---cCCCCCccHHH
Q 023442           63 FIY-----------------KVSSLSPTRHFIIHS--------------RK-----ALLNGISPAE---NRTIPPLKYEY  103 (282)
Q Consensus        63 ~v~-----------------~~le~~Gv~~i~VH~--------------Rt-----~~~~G~~~ad---~~~i~~~~~~~  103 (282)
                      .+.                 ....+.|+++|.-+|              |+     +...|.++..   +.......|+.
T Consensus       115 ~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el  194 (293)
T PRK04180        115 IDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL  194 (293)
T ss_pred             HHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH
Confidence            110                 012345666665441              11     0123332211   01112345888


Q ss_pred             HHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          104 YYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       104 i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.++++. .++||+  +.|||.|++|+..+++.|||+|++|++++..+.
T Consensus       195 L~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d  242 (293)
T PRK04180        195 VKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD  242 (293)
T ss_pred             HHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC
Confidence            8888875 479998  999999999999999999999999999985443

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=99.53  E-value=7.7e-14  Score=129.84  Aligned_cols=140  Identities=19%  Similarity=0.204  Sum_probs=100.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec-
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-   80 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~-   80 (282)
                      ||++||+  +.  +  |..+-.+++.+.+++++|++.+++||.||+....+.    .++++ ++..+.+.|++.|..-. 
T Consensus       125 lN~ScPn--~~--~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~----~~~a~-~~~~~~~~g~~~i~~~nt  193 (310)
T PRK02506        125 LNLSCPN--VP--G--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI----VHFDQ-AAAIFNKFPLAFVNCINS  193 (310)
T ss_pred             EECCCCC--CC--C--ccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH----HHHHH-HHHHhCcCceEEEEEecc
Confidence            7999997  32  2  445566899999999999999999999999976532    23333 22334456776654322 


Q ss_pred             ------------CCcc--cCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           81 ------------RKAL--LNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        81 ------------Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                                  +...  ..+.++-.++.+.|+....++++.+.. .++|||++|||.|.+|+.+++..|||+||++.++
T Consensus       194 ~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~  273 (310)
T PRK02506        194 IGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTAL  273 (310)
T ss_pred             CCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHH
Confidence                        1110  111112233556777777888887764 3799999999999999999999999999999999


Q ss_pred             hh-CCccc
Q 023442          146 YQ-NPWYT  152 (282)
Q Consensus       146 l~-nP~if  152 (282)
                      +. +|.+|
T Consensus       274 ~~~gp~~~  281 (310)
T PRK02506        274 HKEGPAVF  281 (310)
T ss_pred             HHhChHHH
Confidence            87 79986

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=99.51  E-value=4.9e-14  Score=132.46  Aligned_cols=139  Identities=15%  Similarity=0.201  Sum_probs=103.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCC-------ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-------VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-------ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~   74 (282)
                      ||.+||.-  .     |...+.+++.+.+++++|++.++       +||.||+...+++ +.+.+    +++.++++|+|
T Consensus       172 lNlScPn~--~-----~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~-~~i~~----ia~~~~~~Gad  239 (335)
T TIGR01036       172 VNVSSPNT--P-----GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTE-SDLED----IADSLVELGID  239 (335)
T ss_pred             EEccCCCC--C-----CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCH-HHHHH----HHHHHHHhCCc
Confidence            79999983  2     33446899999999999998876       9999999876543 12322    45667899999


Q ss_pred             EEEEecCCc------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           75 HFIIHSRKA------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        75 ~i~VH~Rt~------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      .|++..++.            .+.|.|   +..+.|.....++++.+... ++|||+.|||.|++|+.+++..|||.|++
T Consensus       240 Gi~l~NT~~~~~~~~~~~~~~~~GGlS---G~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv  316 (335)
T TIGR01036       240 GVIATNTTVSRSLVQGPKNSDETGGLS---GKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQI  316 (335)
T ss_pred             EEEEECCCCccccccCccccCCCCccc---CHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHh
Confidence            999875432            112222   22344555667777766543 69999999999999999999999999999


Q ss_pred             cHHhhh-CCccchhhh
Q 023442          142 GRAAYQ-NPWYTLGHV  156 (282)
Q Consensus       142 GRgal~-nP~if~~~~  156 (282)
                      |++++. +|.++ ..+
T Consensus       317 ~ta~~~~Gp~~~-~~i  331 (335)
T TIGR01036       317 YSGFIYWGPPLV-KEI  331 (335)
T ss_pred             hHHHHHhCchHH-HHH
Confidence            999977 59975 444

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=99.50  E-value=1.4e-13  Score=122.39  Aligned_cols=126  Identities=19%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCC--CcHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDH--DSYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~--~~~~e~~~~v~~~le~~Gv   73 (282)
                      +++||  .+|+    .|++++.+|+++.++++.+.+.+  .+++.+|      .||.+.  .+..+    +++.+++.|+
T Consensus        93 ~~~Ga--~~vi----lg~~~l~~~~~l~ei~~~~~~~i--~vsid~k~~~v~~~g~~~~~~~~~~e----~~~~~~~~g~  160 (233)
T PRK00748         93 LDAGV--SRVI----IGTAAVKNPELVKEACKKFPGKI--VVGLDARDGKVATDGWLETSGVTAED----LAKRFEDAGV  160 (233)
T ss_pred             HHcCC--CEEE----ECchHHhCHHHHHHHHHHhCCCc--eeeeeccCCEEEEccCeecCCCCHHH----HHHHHHhcCC
Confidence            46777  4465    69999999999999999986654  4454444      366432  22333    3456788999


Q ss_pred             CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442           74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus        74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      +.|.+|.+++..+... .        +|+.+.++++. .++|||+||||.|++|++++++ +||||||+||+++..-
T Consensus       161 ~~ii~~~~~~~g~~~G-~--------d~~~i~~l~~~-~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~  227 (233)
T PRK00748        161 KAIIYTDISRDGTLSG-P--------NVEATRELAAA-VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGK  227 (233)
T ss_pred             CEEEEeeecCcCCcCC-C--------CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCC
Confidence            9999998875322221 1        38888888775 5799999999999999999999 5599999999997663

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=99.50  E-value=3.1e-13  Score=128.00  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=97.6

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCC--ccEEEEecCC-C-CC-CCcHHHHHHHHHHHHHhCC-CCEEEEecCCcccC
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG-V-DD-HDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLN   86 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~--ipvsvKiR~G-~-d~-~~~~~e~~~~v~~~le~~G-v~~i~VH~Rt~~~~   86 (282)
                      ++|.||+++.+|.+++.||+++|+++++  .||.+++... | ++ ..+.++..+ +++.+++.| +|.|.+..-...-.
T Consensus       187 RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~-la~~L~~~G~~d~i~vs~~~~~~~  265 (363)
T COG1902         187 RTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVE-LAKALEEAGLVDYIHVSEGGYERG  265 (363)
T ss_pred             CCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHH-HHHHHHhcCCccEEEeecccccCC
Confidence            6789999999999999999999999995  4677766541 2 11 123455544 677889999 79999986432111


Q ss_pred             CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccchhhh
Q 023442           87 GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        87 G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if~~~~  156 (282)
                      +.   ..... +.....+.+..+....+|||++|+|++++.++++++. +||.|.+||+++.||.+. ..+
T Consensus       266 ~~---~~~~~-~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~-~k~  331 (363)
T COG1902         266 GT---ITVSG-PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLV-LKA  331 (363)
T ss_pred             CC---ccccc-cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHH-HHH
Confidence            10   00000 1122233333343457999999999999999999995 499999999999999974 443

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=99.43  E-value=3.7e-13  Score=124.25  Aligned_cols=141  Identities=21%  Similarity=0.347  Sum_probs=99.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||.-.    +  |..+-.+++...++++.+++.+++||.||+....++.   .. ... +..+.+.|++.|+...+
T Consensus       130 lN~ScPn~~----~--~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~---~~-~~~-~~~~~~~g~~gi~~~Nt  198 (295)
T PF01180_consen  130 LNLSCPNVP----G--GRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDI---EP-FAI-AAELAADGADGIVAINT  198 (295)
T ss_dssp             EESTSTTST----T--SGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCH---HH-HHH-HHHHHTHTECEEEE---
T ss_pred             EEeeccCCC----C--ccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCch---HH-HHH-HHHhhccceeEEEEecC
Confidence            799999732    2  5567788999999999999999999999998654442   11 112 22344789999984322


Q ss_pred             ----------Cc--c----cCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           82 ----------KA--L----LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        82 ----------t~--~----~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                                +.  .    ..|.|   +..+.|+...+++++.+... ++|||++|||.|.+|+.+++..|||.|+++.+
T Consensus       199 ~~~~~~id~~~~~~~~~~~~gGlS---G~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sa  275 (295)
T PF01180_consen  199 FGQGDAIDLETRRPVLGNGFGGLS---GPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSA  275 (295)
T ss_dssp             EEEEE-EETTTTEESSSGGEEEEE---EGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHH
T ss_pred             ccCcccccchhcceeeccccCCcC---chhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechh
Confidence                      11  0    11222   23445566777888877653 59999999999999999999999999999999


Q ss_pred             h-hhCCccchhhhH
Q 023442          145 A-YQNPWYTLGHVD  157 (282)
Q Consensus       145 a-l~nP~if~~~~~  157 (282)
                      + +.+|+++ .++.
T Consensus       276 l~~~Gp~~~-~~i~  288 (295)
T PF01180_consen  276 LIYRGPGVI-RRIN  288 (295)
T ss_dssp             HHHHGTTHH-HHHH
T ss_pred             hhhcCcHHH-HHHH
Confidence            9 7789985 4443

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.42  E-value=1.7e-12  Score=115.38  Aligned_cols=127  Identities=20%  Similarity=0.276  Sum_probs=94.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD--SYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~--~~~e~~~~v~~~le~~Gv   73 (282)
                      +++||  .+|+    .|+.++++|+.+.++++++... .+.+++++|      .||.+..  +..+    +++.+++.|+
T Consensus        91 ~~~Ga--~~vv----lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~----~~~~~~~~g~  159 (230)
T TIGR00007        91 LDLGV--DRVI----IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGEVAVKGWLEKSEVSLEE----LAKRLEELGL  159 (230)
T ss_pred             HHcCC--CEEE----EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEcCCcccCCCCHHH----HHHHHHhCCC
Confidence            45666  4465    4888999999999999998522 245666666      4566532  2223    3445678999


Q ss_pred             CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +.+++|.+++.....         ..+|+.+.++.+. .++||+++|||.|.+|+++++++||||||+|++++.+-
T Consensus       160 ~~ii~~~~~~~g~~~---------g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~  225 (230)
T TIGR00007       160 EGIIYTDISRDGTLS---------GPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGK  225 (230)
T ss_pred             CEEEEEeecCCCCcC---------CCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence            999999887532211         1248888888765 68999999999999999998889999999999998873

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04732 HisA HisA

Probab=99.42  E-value=9.2e-13  Score=117.14  Aligned_cols=129  Identities=19%  Similarity=0.278  Sum_probs=93.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCC--CcHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDH--DSYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~--~~~~e~~~~v~~~le~~Gv   73 (282)
                      ++.||  .+|+    .|+.++.+|+++.++++.+.+. .+.+++++|      .||...  .+..++    ++.+++.|+
T Consensus        92 ~~~Ga--d~vv----igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ga  160 (234)
T cd04732          92 LDLGV--SRVI----IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVATKGWLETSEVSLEEL----AKRFEELGV  160 (234)
T ss_pred             HHcCC--CEEE----ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEECCCeeecCCCHHHH----HHHHHHcCC
Confidence            45565  4555    5889999999999999987642 233343333      245321  223333    345678999


Q ss_pred             CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.+++|.+++.....         ..+|+.+.++++. .++||+++|||.|.+|+.++++.||||||+||+++.++.-
T Consensus       161 ~~iii~~~~~~g~~~---------g~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~~~  228 (234)
T cd04732         161 KAIIYTDISRDGTLS---------GPNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGKIT  228 (234)
T ss_pred             CEEEEEeecCCCccC---------CCCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence            999999876431111         1238888888764 5899999999999999999999999999999999999853

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.42  E-value=1.5e-12  Score=116.81  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=87.5

Q ss_pred             ccccccCCHHHHHHHHHHHhh-cCCccEEEE----------ecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAA-NTNVPVSVK----------CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~-~~~ipvsvK----------iR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      .|++++.+|+.+.++++.+.+ .+-+++.+|          +|.+++...  .+..+ +++.+++.|++.|++|+++.. 
T Consensus        99 ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~--~~~~~-~~~~l~~~G~d~i~v~~i~~~-  174 (243)
T cd04731          99 INSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG--LDAVE-WAKEVEELGAGEILLTSMDRD-  174 (243)
T ss_pred             ECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC--CCHHH-HHHHHHHCCCCEEEEeccCCC-
Confidence            488899999999999999853 344445444          443333321  12222 345678999999999998752 


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                       |..       ...+|+.+.++++. .++|||++|||+|++|+.++++ +|||+||+||+++..-
T Consensus       175 -g~~-------~g~~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~  230 (243)
T cd04731         175 -GTK-------KGYDLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGE  230 (243)
T ss_pred             -CCC-------CCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence             211       11248888888764 5899999999999999999999 7999999999986654

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.42  E-value=1.1e-12  Score=118.99  Aligned_cols=124  Identities=18%  Similarity=0.239  Sum_probs=93.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC-----------CCCC--CcHHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-----------VDDH--DSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G-----------~d~~--~~~~e~~~~v~~~l   68 (282)
                      ++.||  .+|+    .|++++.+|+++.++++.+.+. .+++++++|.|           |.+.  ....+    +++.+
T Consensus        93 ~~~G~--~~vv----igs~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e----~~~~~  161 (258)
T PRK01033         93 FSLGV--EKVS----INTAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLE----LAKEY  161 (258)
T ss_pred             HHCCC--CEEE----EChHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHH----HHHHH
Confidence            34555  3454    4788999999999999998533 37888888866           2121  12323    34567


Q ss_pred             HhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           69 SLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      ++.|++.+++|++++  .++|.           +|+.+.++++. +++|||++|||.|.+|+.++++ +|||||++|+++
T Consensus       162 ~~~g~~~ii~~~i~~~G~~~G~-----------d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~  229 (258)
T PRK01033        162 EALGAGEILLNSIDRDGTMKGY-----------DLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLF  229 (258)
T ss_pred             HHcCCCEEEEEccCCCCCcCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEccee
Confidence            899999999998875  44442           38888888765 6899999999999999999995 999999999887


Q ss_pred             hhC
Q 023442          146 YQN  148 (282)
Q Consensus       146 l~n  148 (282)
                      .-.
T Consensus       230 ~~~  232 (258)
T PRK01033        230 VFK  232 (258)
T ss_pred             eeC
Confidence            543

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.40  E-value=2.3e-12  Score=116.44  Aligned_cols=125  Identities=16%  Similarity=0.180  Sum_probs=93.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHh-----hcCC-------ccEEEEecCCCCCCC-cHHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-----ANTN-------VPVSVKCRIGVDDHD-SYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~-----~~~~-------ipvsvKiR~G~d~~~-~~~e~~~~v~~~l   68 (282)
                      ++.||  ..|.    .|+.++.+|+++.++.+.+.     -.++       .|++||+|.+++... +..+.    .+.+
T Consensus        93 l~~Ga--~~Vi----igt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~  162 (253)
T PRK02083         93 LRAGA--DKVS----INSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEW----AKEV  162 (253)
T ss_pred             HHcCC--CEEE----EChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHH----HHHH
Confidence            45666  3454    58899999999999999873     1223       467999997665432 23232    3456


Q ss_pred             HhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           69 SLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        69 e~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      ++.|++.+++|.  |....+|.           +|+.+.++.+. .++|||++|||.|.+|+.++++ +|||+||+|+++
T Consensus       163 ~~~g~~~ii~~~i~~~g~~~g~-----------d~~~i~~~~~~-~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al  230 (253)
T PRK02083        163 EELGAGEILLTSMDRDGTKNGY-----------DLELTRAVSDA-VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIF  230 (253)
T ss_pred             HHcCCCEEEEcCCcCCCCCCCc-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence            789999999986  54444443           38888888765 5899999999999999999998 899999999988


Q ss_pred             hhC
Q 023442          146 YQN  148 (282)
Q Consensus       146 l~n  148 (282)
                      +..
T Consensus       231 ~~~  233 (253)
T PRK02083        231 HFG  233 (253)
T ss_pred             HcC
Confidence            755

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.38  E-value=5.4e-12  Score=112.94  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=95.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD--SYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~--~~~e~~~~v~~~le~~Gv   73 (282)
                      +..||  .+|+    .|+.++++|+++.++++.+... .+.+++.++      .||++..  +..++    ++.+++.|+
T Consensus        95 ~~~Ga--~~v~----iGs~~~~~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~----~~~~~~~G~  163 (241)
T PRK13585         95 LDLGV--DRVI----LGTAAVENPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEA----AKRFEELGA  163 (241)
T ss_pred             HHcCC--CEEE----EChHHhhChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHH----HHHHHHcCC
Confidence            34566  4454    5889999999999998887432 122232222      3776532  33333    445678999


Q ss_pred             CEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccch
Q 023442           74 RHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus        74 ~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~  153 (282)
                      +.|++|.++..  |..       .+.+|+.+.++++. .++||+++|||+|++|+.+++++||++||+|++++.+|..+ 
T Consensus       164 ~~i~~~~~~~~--g~~-------~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~-  232 (241)
T PRK13585        164 GSILFTNVDVE--GLL-------EGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTL-  232 (241)
T ss_pred             CEEEEEeecCC--CCc-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCH-
Confidence            99999998642  210       12348888888775 58999999999999999998779999999999999999864 


Q ss_pred             hhh
Q 023442          154 GHV  156 (282)
Q Consensus       154 ~~~  156 (282)
                      .++
T Consensus       233 ~~~  235 (241)
T PRK13585        233 EEA  235 (241)
T ss_pred             HHH
Confidence            443

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=99.38  E-value=4.5e-12  Score=120.40  Aligned_cols=130  Identities=13%  Similarity=0.077  Sum_probs=92.7

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCC-----CCCCCcHHH-HHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDSYNQ-LCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G-----~d~~~~~~e-~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      +++.||++|.+|.+++.||+++|+++++- .|.+|+..-     .+...+.+| .++ +++.+++.|+|+|.|.....  
T Consensus       197 RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~-~~~~L~~~giD~i~vs~~~~--  273 (362)
T PRK10605        197 RTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALY-LIEQLGKRGIAYLHMSEPDW--  273 (362)
T ss_pred             CCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHH-HHHHHHHcCCCEEEeccccc--
Confidence            67899999999999999999999999842 466655421     111124455 344 56778899999999986321  


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      .+.        .+. ...+.+.+++..++||+++|++ |++.++++++ ..||.|++||+++.||++. ..+
T Consensus       274 ~~~--------~~~-~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~-~k~  334 (362)
T PRK10605        274 AGG--------EPY-SDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLV-ARL  334 (362)
T ss_pred             cCC--------ccc-cHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHH-HHH
Confidence            110        011 1223233343458899999996 9999999999 4599999999999999974 444

>PLN02826 dihydroorotate dehydrogenase

Probab=99.38  E-value=7.9e-12  Score=120.20  Aligned_cols=136  Identities=18%  Similarity=0.200  Sum_probs=99.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc---------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN---------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP   72 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~---------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G   72 (282)
                      ||..||.-  .     |-.-+++++.+.+++++|++.         .++||.||+....++    +++. .+++.+.++|
T Consensus       222 lNiScPNt--p-----glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~----~di~-~ia~~a~~~G  289 (409)
T PLN02826        222 INVSSPNT--P-----GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSK----EDLE-DIAAVALALG  289 (409)
T ss_pred             EECCCCCC--C-----CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCH----HHHH-HHHHHHHHcC
Confidence            89999972  1     334467899999999999743         468999999754432    1222 3456678999


Q ss_pred             CCEEEEecCCc-------------ccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCE
Q 023442           73 TRHFIIHSRKA-------------LLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHH  138 (282)
Q Consensus        73 v~~i~VH~Rt~-------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~Dg  138 (282)
                      +|.|++..++.             ...|.|   ++.+.+...+.++++.+... ++|||+.|||.|.+|+.+++..||+.
T Consensus       290 ~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS---G~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~  366 (409)
T PLN02826        290 IDGLIISNTTISRPDSVLGHPHADEAGGLS---GKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASL  366 (409)
T ss_pred             CCEEEEEcccCcCccchhcccccccCCCcC---CccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCe
Confidence            99999985431             112222   23344555667777766533 79999999999999999999999999


Q ss_pred             EEecHHhhhC-Cccc
Q 023442          139 VMVGRAAYQN-PWYT  152 (282)
Q Consensus       139 VmIGRgal~n-P~if  152 (282)
                      |+++++++.+ |+++
T Consensus       367 VQv~Ta~~~~Gp~~i  381 (409)
T PLN02826        367 VQLYTAFAYEGPALI  381 (409)
T ss_pred             eeecHHHHhcCHHHH
Confidence            9999999774 8874

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.35  E-value=7e-12  Score=118.96  Aligned_cols=106  Identities=17%  Similarity=0.276  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+|+++.+++++++++.   ||||+|++.   .+..++    ++.+.++|++.|++|+||..+...++.       ..|.
T Consensus       116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~---~~~~e~----a~~l~eAGad~I~ihgrt~~q~~~sg~-------~~p~  178 (369)
T TIGR01304       116 LKPELLGERIAEVRDSG---VITAVRVSP---QNAREI----APIVVKAGADLLVIQGTLVSAEHVSTS-------GEPL  178 (369)
T ss_pred             cChHHHHHHHHHHHhcc---eEEEEecCC---cCHHHH----HHHHHHCCCCEEEEeccchhhhccCCC-------CCHH
Confidence            57999999999999973   999999853   234443    456789999999999998543221111       1266


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+++++ .++|||+ |+|.|.+++.+++++|||+||+||+.-.
T Consensus       179 ~l~~~i~~-~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~  221 (369)
T TIGR01304       179 NLKEFIGE-LDVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGAN  221 (369)
T ss_pred             HHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence            67777776 4899998 9999999999999999999999998854

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=99.35  E-value=7.9e-12  Score=111.39  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC------------CCCCCcHHHHHHHHHHHHHh
Q 023442            3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG------------VDDHDSYNQLCDFIYKVSSL   70 (282)
Q Consensus         3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G------------~d~~~~~~e~~~~v~~~le~   70 (282)
                      +.||-  .|.    .|+.++++|+++.++++...+. .+++++++|.+            |.+... .+..+ +++.+++
T Consensus        94 ~~G~~--~vi----lg~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~~~  164 (232)
T TIGR03572        94 SLGAD--KVS----INTAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATG-RDPVE-WAREAEQ  164 (232)
T ss_pred             HcCCC--EEE----EChhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCC-CCHHH-HHHHHHH
Confidence            45663  344    5889999999999999887443 36788888774            221111 11222 3456789


Q ss_pred             CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .|++.|++|+++....+.         ..+|+.+.++++. .++||+++|||.|++|+.+++. +|||+||+|+++
T Consensus       165 ~G~d~i~i~~i~~~g~~~---------g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       165 LGAGEILLNSIDRDGTMK---------GYDLELIKTVSDA-VSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             cCCCEEEEeCCCccCCcC---------CCCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            999999999976531111         1248888888775 5899999999999999999665 999999999876

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=99.35  E-value=9.5e-13  Score=124.05  Aligned_cols=139  Identities=18%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCC---CcHHHHHHHHHHHHHhCCCCEEEEecCCc--c
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L   84 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~---~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~   84 (282)
                      .+++.||+++.+|.+++.||+++|++++  +.||.+|+.. ++..   .+.++... +++++++.|++.+.++.-..  .
T Consensus       186 ~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~-~~~~~~g~~~~e~~~-~~~~~~~~~~d~~~~~~~~~~~~  263 (341)
T PF00724_consen  186 RRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSP-DDFVEGGITLEETIE-IAKLLEELGVDFLDVSHGSYVHW  263 (341)
T ss_dssp             --SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEET-TCSSTTSHHSHHHHH-HHHHHHHHHHTTEEEEEESEEEE
T ss_pred             CCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEee-ecccCCCCchHHHHH-HHHHHHHHhhhhccccccccccc
Confidence            3689999999999999999999999998  5777777754 2211   12344433 45678889999887642211  0


Q ss_pred             cC--CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           85 LN--GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        85 ~~--G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      ..  ...+.+  ..+....... +.+++..++|||++|+|.+++.++++++ ..||.|++||+++.||.+. ..+
T Consensus       264 ~~~~~~~~~~--~~~~~~~~~a-~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~-~k~  334 (341)
T PF00724_consen  264 SEPRPSPPFD--FEPGYNLDLA-EAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLP-NKA  334 (341)
T ss_dssp             EBTSSTTTTT--TTTTTTHHHH-HHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHH-HHH
T ss_pred             cccccccccc--cccchhhhhh-hhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHH-HHH
Confidence            00  000011  1111112233 3334446899999999999999999999 6799999999999999974 443

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.27  E-value=4.3e-11  Score=112.51  Aligned_cols=129  Identities=21%  Similarity=0.127  Sum_probs=85.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+.-+.. .+  .   .+.+.+.++++++++.+++||.||.. |...  + .+    .++.++++|+|+|+||+|
T Consensus       147 i~ln~~q~~~~p-~g--~---~~f~~~le~i~~i~~~~~vPVivK~~-g~g~--~-~~----~a~~L~~aGvd~I~Vsg~  212 (333)
T TIGR02151       147 IHLNVLQELVQP-EG--D---RNFKGWLEKIAEICSQLSVPVIVKEV-GFGI--S-KE----VAKLLADAGVSAIDVAGA  212 (333)
T ss_pred             EcCcccccccCC-CC--C---cCHHHHHHHHHHHHHhcCCCEEEEec-CCCC--C-HH----HHHHHHHcCCCEEEECCC
Confidence            567777654332 22  1   23456778999999999999999975 5422  2 22    345678999999999987


Q ss_pred             CcccCCCCcCC---cCCCC------CccH-----HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           82 KALLNGISPAE---NRTIP------PLKY-----EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        82 t~~~~G~~~ad---~~~i~------~~~~-----~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      ...    +.++   .+...      ...|     +.+.++.+...++|||++|||.|.+|+.+++..|||+|++||++|.
T Consensus       213 gGt----~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~  288 (333)
T TIGR02151       213 GGT----SWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK  288 (333)
T ss_pred             CCC----cccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence            421    0000   00000      0112     2344444313579999999999999999999999999999999874


Q ss_pred             C
Q 023442          148 N  148 (282)
Q Consensus       148 n  148 (282)
                      .
T Consensus       289 ~  289 (333)
T TIGR02151       289 A  289 (333)
T ss_pred             H
Confidence            3

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PLN02411 12-oxophytodienoate reductase

Probab=99.27  E-value=4.5e-11  Score=114.64  Aligned_cols=138  Identities=17%  Similarity=0.150  Sum_probs=87.4

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCCC-----CCCCcHHHHHHHHHHHHHh----C--CCCEEEEe
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGV-----DDHDSYNQLCDFIYKVSSL----S--PTRHFIIH   79 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~-----d~~~~~~e~~~~v~~~le~----~--Gv~~i~VH   79 (282)
                      .++|.||+++.+|.+++.||+++|+++++- .|.+|+...-     ++....++... +++.+++    .  |+|+|.|.
T Consensus       202 ~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~vd~i~vs  280 (391)
T PLN02411        202 DRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLA-VVERLNKLQLQNGSKLAYLHVT  280 (391)
T ss_pred             CCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHH-HHHHHHHHHhhcCCCeEEEEec
Confidence            367999999999999999999999999853 3666665311     11112222222 2333443    3  59999998


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccc
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if  152 (282)
                      .......+..... ..-++..+..+.+.+++..++||+++|+| +.++++++++. .||.|.+||+++.||.+.
T Consensus       281 ~g~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~  352 (391)
T PLN02411        281 QPRYTAYGQTESG-RHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLV  352 (391)
T ss_pred             CCcccccCCCccc-ccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHH
Confidence            5432100100000 00011112223233344468999999999 67999999994 499999999999999974

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.23  E-value=7.9e-11  Score=106.63  Aligned_cols=128  Identities=13%  Similarity=0.126  Sum_probs=91.2

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHh-hcC--Ccc-----E------EEEecCCCCCCCcHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIA-ANT--NVP-----V------SVKCRIGVDDHDSYNQLCDFIYKV   67 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~-~~~--~ip-----v------svKiR~G~d~~~~~~e~~~~v~~~   67 (282)
                      ++.||  .+|+    .|+.++.+|+++.++.+..- +.+  ++.     +      -||+|.+++....  +..+ +++.
T Consensus        93 ~~~Ga--~~vi----vgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~--~~~~-~~~~  163 (254)
T TIGR00735        93 LRAGA--DKVS----INTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGL--DAVE-WAKE  163 (254)
T ss_pred             HHcCC--CEEE----EChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCC--CHHH-HHHH
Confidence            45565  4454    48889999999999988773 222  222     1      4788865543221  2222 3456


Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      +++.|++.|.+|++++.  |..       +..+|+.+.++++. +++|||++|||.|++|+.++++ .+|||||+|++++
T Consensus       164 l~~~G~~~iivt~i~~~--g~~-------~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~  233 (254)
T TIGR00735       164 VEKLGAGEILLTSMDKD--GTK-------SGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH  233 (254)
T ss_pred             HHHcCCCEEEEeCcCcc--cCC-------CCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh
Confidence            78999999999998752  221       12248888888765 5899999999999999999999 6699999999875


Q ss_pred             hC
Q 023442          147 QN  148 (282)
Q Consensus       147 ~n  148 (282)
                      ..
T Consensus       234 ~~  235 (254)
T TIGR00735       234 YR  235 (254)
T ss_pred             CC
Confidence            44

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=1.4e-10  Score=110.23  Aligned_cols=104  Identities=18%  Similarity=0.248  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+|+++.+++++++++ +  |++|+|++.   .+..++    ++.+.++|++.|++|+||..+.......       +|.
T Consensus       115 ~~p~l~~~iv~~~~~~-~--V~v~vr~~~---~~~~e~----a~~l~eaGvd~I~vhgrt~~~~h~~~~~-------~~~  177 (368)
T PRK08649        115 IKPELITERIAEIRDA-G--VIVAVSLSP---QRAQEL----APTVVEAGVDLFVIQGTVVSAEHVSKEG-------EPL  177 (368)
T ss_pred             CCHHHHHHHHHHHHhC-e--EEEEEecCC---cCHHHH----HHHHHHCCCCEEEEeccchhhhccCCcC-------CHH
Confidence            4688899999999886 3  667777632   223343    3456799999999999985432211111       266


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .+.+++++ .++|||+ |+|.|++++++++++|||+||+|||-
T Consensus       178 ~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~  218 (368)
T PRK08649        178 NLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP  218 (368)
T ss_pred             HHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            67677776 4899999 99999999999999999999999985

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=99.19  E-value=2.1e-10  Score=102.10  Aligned_cols=128  Identities=23%  Similarity=0.371  Sum_probs=100.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCCcHHHHHHHHHHHHHhCCCCE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHDSYNQLCDFIYKVSSLSPTRH   75 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~~~~e~~~~v~~~le~~Gv~~   75 (282)
                      |.+||  .+|+    .|+.-.++|+++.++++...+  .+-|++..|.      ||.+.... ++. .+++.+++.|+..
T Consensus        94 l~~G~--~rVi----iGt~av~~p~~v~~~~~~~g~--rivv~lD~r~g~vav~GW~e~s~~-~~~-~l~~~~~~~g~~~  163 (241)
T COG0106          94 LDAGV--ARVI----IGTAAVKNPDLVKELCEEYGD--RIVVALDARDGKVAVSGWQEDSGV-ELE-ELAKRLEEVGLAH  163 (241)
T ss_pred             HHCCC--CEEE----EecceecCHHHHHHHHHHcCC--cEEEEEEccCCccccccccccccC-CHH-HHHHHHHhcCCCe
Confidence            45677  6677    588889999999999999874  3556666664      67765331 122 2455678999999


Q ss_pred             EEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCcc
Q 023442           76 FIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        76 i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~i  151 (282)
                      +.+|  .|..+.+|.           +++.+.++++.. ++|||++|||.|.+|++.+.+. |++||.+||+++..-.-
T Consensus       164 ii~TdI~~DGtl~G~-----------n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~  230 (241)
T COG0106         164 ILYTDISRDGTLSGP-----------NVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFT  230 (241)
T ss_pred             EEEEecccccccCCC-----------CHHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCC
Confidence            9999  566666664           378888888864 9999999999999999999986 99999999999988754

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.19  E-value=4.4e-10  Score=106.46  Aligned_cols=130  Identities=20%  Similarity=0.109  Sum_probs=87.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+.-+.. .  |-   .+.+.+.+.++++++.+++||.||.. |...  +. +    .++.++++|+|.|.|+++
T Consensus       154 l~l~~~qe~~~p-~--g~---~~f~~~le~i~~i~~~~~vPVivK~~-g~g~--s~-~----~a~~l~~~Gvd~I~Vsg~  219 (352)
T PRK05437        154 IHLNPLQELVQP-E--GD---RDFRGWLDNIAEIVSALPVPVIVKEV-GFGI--SK-E----TAKRLADAGVKAIDVAGA  219 (352)
T ss_pred             EeCccchhhcCC-C--Cc---ccHHHHHHHHHHHHHhhCCCEEEEeC-CCCC--cH-H----HHHHHHHcCCCEEEECCC
Confidence            466666643332 2  11   35566779999999999999999986 4321  22 2    244667899999999986


Q ss_pred             Ccc-------cCCC------CcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           82 KAL-------LNGI------SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        82 t~~-------~~G~------~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.       ..+.      ...+| .++  ..+.+.++.+...++|||++|||.|..|+.+++..|||+|++||++|..
T Consensus       220 GGt~~~~ie~~R~~~~~~~~~~~~~-g~p--t~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~  296 (352)
T PRK05437        220 GGTSWAAIENYRARDDRLASYFADW-GIP--TAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA  296 (352)
T ss_pred             CCCCccchhhhhhhccccccccccc-cCC--HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence            321       0110      00111 111  1234555555435899999999999999999999999999999998763

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=99.13  E-value=3.4e-10  Score=107.32  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE--EEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i--~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +--+-++.+++.+++||+||   |...   . +.    ++.+.++|++.|  ..||+.+.+.+.          ..|+.+
T Consensus       215 ~~w~~i~~l~~~~~~PvivK---Gv~~---~-ed----a~~a~~~Gvd~I~VS~HGGrq~~~~~----------a~~~~L  273 (367)
T TIGR02708       215 LSPRDIEEIAGYSGLPVYVK---GPQC---P-ED----ADRALKAGASGIWVTNHGGRQLDGGP----------AAFDSL  273 (367)
T ss_pred             CCHHHHHHHHHhcCCCEEEe---CCCC---H-HH----HHHHHHcCcCEEEECCcCccCCCCCC----------cHHHHH
Confidence            33456788888889999999   4332   2 22    345678999987  457776544332          237777


Q ss_pred             HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++++.. .++|||++|||++..|+.+++..|||+|||||.+|.
T Consensus       274 ~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~  317 (367)
T TIGR02708       274 QEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY  317 (367)
T ss_pred             HHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            7776644 369999999999999999999999999999998754

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.12  E-value=1.5e-09  Score=101.89  Aligned_cols=113  Identities=21%  Similarity=0.187  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc--c-----cCCCCc------
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--L-----LNGISP------   90 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~-----~~G~~~------   90 (282)
                      +.+.+.+.++.+++.+++||.+|.. |..  .+. +    .++.++++|+|.|.|+++-.  +     +.+...      
T Consensus       162 df~~~~~~i~~l~~~~~vPVivK~~-g~g--~s~-~----~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~  233 (326)
T cd02811         162 DFRGWLERIEELVKALSVPVIVKEV-GFG--ISR-E----TAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAE  233 (326)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEec-CCC--CCH-H----HHHHHHHcCCCEEEECCCCCCccccccccccccccccccc
Confidence            4555678899999999999999984 321  122 2    24567899999999997521  0     011000      


Q ss_pred             --CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           91 --AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        91 --ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                        .+| .++  -...+.++.+...++|||++|||.|..|+.+++..|||+|++||++|.
T Consensus       234 ~~~~~-g~~--t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         234 YFADW-GIP--TAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK  289 (326)
T ss_pred             ccccc-ccc--HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence              011 011  023344544433489999999999999999999999999999998764

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.12  E-value=2.5e-10  Score=107.90  Aligned_cols=103  Identities=22%  Similarity=0.344  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCccHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+..+.++.+++.+++||.||   |...   .++     ++.+.++|+|.|+|  ||+.+...+          |..++.
T Consensus       207 ~~~~~~l~~lr~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhGGr~ld~~----------~~~~~~  265 (351)
T cd04737         207 KLSPADIEFIAKISGLPVIVK---GIQS---PED-----ADVAINAGADGIWVSNHGGRQLDGG----------PASFDS  265 (351)
T ss_pred             CCCHHHHHHHHHHhCCcEEEe---cCCC---HHH-----HHHHHHcCCCEEEEeCCCCccCCCC----------chHHHH
Confidence            344577888888889999999   3321   221     23556899999999  876543322          223677


Q ss_pred             HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +.++++.. .++|||++|||.+..|+.+++..|||+|||||+++...
T Consensus       266 l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l  312 (351)
T cd04737         266 LPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL  312 (351)
T ss_pred             HHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence            77776543 26999999999999999999999999999999876644

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.98  E-value=2.3e-09  Score=96.86  Aligned_cols=83  Identities=20%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.|+||.+++...+.         +.+++.++++.+. .++||+++|||.|.+|++++++.|||+|++|++
T Consensus        36 a~~~~~~G~~~i~i~dl~~~~~~~---------~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~  105 (253)
T PRK02083         36 AKRYNEEGADELVFLDITASSEGR---------DTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSA  105 (253)
T ss_pred             HHHHHHcCCCEEEEEeCCcccccC---------cchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence            456778999999999988632222         2348888888775 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhhHh
Q 023442          145 AYQNPWYTLGHVDT  158 (282)
Q Consensus       145 al~nP~if~~~~~~  158 (282)
                      ++.||++| .++.+
T Consensus       106 ~l~~p~~~-~ei~~  118 (253)
T PRK02083        106 AVANPELI-SEAAD  118 (253)
T ss_pred             HhhCcHHH-HHHHH
Confidence            99999986 55543

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.92  E-value=5.2e-09  Score=93.88  Aligned_cols=84  Identities=18%  Similarity=0.243  Sum_probs=68.4

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.|++|.++..  |..       .+.+++.++++++. .++||+++|||.|.+|++++++.|||+|++||
T Consensus        32 ~a~~~~~~G~~~i~i~d~~~~--~~~-------~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~  101 (243)
T cd04731          32 LAKRYNEQGADELVFLDITAS--SEG-------RETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINS  101 (243)
T ss_pred             HHHHHHHCCCCEEEEEcCCcc--ccc-------CcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence            355678999999999988752  211       13357888888775 57999999999999999999999999999999


Q ss_pred             HhhhCCccchhhhHh
Q 023442          144 AAYQNPWYTLGHVDT  158 (282)
Q Consensus       144 gal~nP~if~~~~~~  158 (282)
                      +++.||+++ .++..
T Consensus       102 ~~~~~p~~~-~~i~~  115 (243)
T cd04731         102 AAVENPELI-REIAK  115 (243)
T ss_pred             hhhhChHHH-HHHHH
Confidence            999999986 55543

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.91  E-value=6.2e-09  Score=92.95  Aligned_cols=124  Identities=19%  Similarity=0.332  Sum_probs=89.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCC-------CCCC--CcHHHHHHHHHHHHHhCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIG-------VDDH--DSYNQLCDFIYKVSSLSP   72 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G-------~d~~--~~~~e~~~~v~~~le~~G   72 (282)
                      +++||  .+|+    .|+..+++|+++.++++..-.. .+-+++.+|.|       |.+.  .+..++    .+.+++.|
T Consensus        92 l~~Ga--~~Vv----igt~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~v~~~gw~~~~~~~~~~~----~~~~~~~g  160 (229)
T PF00977_consen   92 LDAGA--DRVV----IGTEALEDPELLEELAERYGSQ-RIVVSLDARDGYKVATNGWQESSGIDLEEF----AKRLEELG  160 (229)
T ss_dssp             HHTT---SEEE----ESHHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEEEEETTTTEEEEEEHHHH----HHHHHHTT
T ss_pred             HHhCC--CEEE----eChHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceEEEecCccccCCcCHHHH----HHHHHhcC
Confidence            45666  5666    5889999999999999998653 34455555544       5543  234443    34567899


Q ss_pred             CCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           73 TRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        73 v~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      +..+.++  .|....+|.           +++.+.++.+.. ++|||++|||.|.+|+.++.+.|+|+|++|++++..
T Consensus       161 ~~~ii~tdi~~dGt~~G~-----------d~~~~~~l~~~~-~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~g  226 (229)
T PF00977_consen  161 AGEIILTDIDRDGTMQGP-----------DLELLKQLAEAV-NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHEG  226 (229)
T ss_dssp             -SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred             CcEEEEeeccccCCcCCC-----------CHHHHHHHHHHc-CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhCC
Confidence            9999998  465555553           277777777654 899999999999999999999999999999999754

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.87  E-value=3.2e-08  Score=88.71  Aligned_cols=122  Identities=17%  Similarity=0.271  Sum_probs=91.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHD--SYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~--~~~e~~~~v~~~le~~Gv   73 (282)
                      +..||  .+|+    .|+..+++|+++.++.+...+.  +-|++-.|-      ||.+..  +..++    .+.+++.|+
T Consensus        95 l~~Ga--~kvv----igt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~----~~~~~~~g~  162 (234)
T PRK13587         95 FAAGI--NYCI----VGTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSF----VRQLSDIPL  162 (234)
T ss_pred             HHCCC--CEEE----ECchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHH----HHHHHHcCC
Confidence            45677  5676    5899999999999999887443  445555543      465432  23333    345678999


Q ss_pred             CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      ..+.+.  .|.++.+|.           +++.+.++.+. +++||++.|||.|.+|+.++++.|+++|.+|++++.
T Consensus       163 ~~ii~tdi~~dGt~~G~-----------~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        163 GGIIYTDIAKDGKMSGP-----------NFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             CEEEEecccCcCCCCcc-----------CHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            998887  455555553           37777777764 689999999999999999999999999999999986

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=98.84  E-value=5.6e-08  Score=82.23  Aligned_cols=102  Identities=20%  Similarity=0.126  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++..++++++++.+ ++|+.+|++...+..    + .     .+.+.|++.|.++++.....+.. ..    +. ....
T Consensus        98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~----~-~-----~~~~~g~d~i~~~~~~~~~~~~~-~~----~~-~~~~  161 (200)
T cd04722          98 AREDLELIRELREAVPDVKVVVKLSPTGELA----A-A-----AAEEAGVDEVGLGNGGGGGGGRD-AV----PI-ADLL  161 (200)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEECCCCccc----h-h-----hHHHcCCCEEEEcCCcCCCCCcc-Cc----hh-HHHH
Confidence            567889999999887 899999998643221    1 0     14578999999998764322211 00    00 0122


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +..+.+ .+++||+++|||++++++.++++.|||+|++||
T Consensus       162 ~~~~~~-~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         162 LILAKR-GSKVPVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             HHHHHh-cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence            333333 468999999999999999999999999999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=98.83  E-value=4.2e-08  Score=89.31  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             ccHHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           99 LKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      ..++.+.++++. .++||+  +.|||.|++|+..+++.|||||++|+++..
T Consensus       184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k  233 (287)
T TIGR00343       184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  233 (287)
T ss_pred             CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence            358888888775 479998  999999999999999999999999999975

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.82  E-value=3.6e-08  Score=89.46  Aligned_cols=123  Identities=16%  Similarity=0.232  Sum_probs=89.8

Q ss_pred             ccccCCchhhcccCcccccccCC----HHHHHHHHHHH-hhcCCccEEEEec----------CCCCCCCcHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLD----PKFVGEAMSVI-AANTNVPVSVKCR----------IGVDDHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~----p~~~~eiv~~v-~~~~~ipvsvKiR----------~G~d~~~~~~e~~~~v~~   66 (282)
                      |++|+  .+|+    .|+...++    |+++.++++.. .+.  +-|++..|          -||.+.... ++.+++.+
T Consensus       101 l~~Ga--~rVi----igT~Av~~~~~~p~~v~~~~~~~G~~~--IvvsiD~k~~~g~~~Va~~GW~~~t~~-~~~e~~~~  171 (262)
T PLN02446        101 LDAGA--SHVI----VTSYVFRDGQIDLERLKDLVRLVGKQR--LVLDLSCRKKDGRYYVVTDRWQKFSDL-AVDEETLE  171 (262)
T ss_pred             HHcCC--CEEE----EchHHHhCCCCCHHHHHHHHHHhCCCC--EEEEEEEEecCCCEEEEECCCcccCCC-CHHHHHHH
Confidence            56777  6787    58888998    99999999998 333  33333333          256553321 12233333


Q ss_pred             HHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc--CCCEEEec
Q 023442           67 VSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK--GAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~--g~DgVmIG  142 (282)
                       +.+.|+..|.++  .|..+.+|.           +++.+.++.+. +++|||++|||.|.+|+.++.+.  |+.+|.+|
T Consensus       172 -~~~~g~~eii~TdI~rDGtl~G~-----------d~el~~~l~~~-~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvG  238 (262)
T PLN02446        172 -FLAAYCDEFLVHGVDVEGKRLGI-----------DEELVALLGEH-SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVG  238 (262)
T ss_pred             -HHHhCCCEEEEEEEcCCCcccCC-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEE
Confidence             457889999998  576666664           27777788775 78999999999999999999983  78999999


Q ss_pred             HHhh
Q 023442          143 RAAY  146 (282)
Q Consensus       143 Rgal  146 (282)
                      |+++
T Consensus       239 kAl~  242 (262)
T PLN02446        239 SALD  242 (262)
T ss_pred             eeHH
Confidence            9994

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.82  E-value=3.9e-08  Score=88.65  Aligned_cols=127  Identities=15%  Similarity=0.180  Sum_probs=92.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec----------CCCCCCCcHHHHHHHHHHHHHhC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----------IGVDDHDSYNQLCDFIYKVSSLS   71 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR----------~G~d~~~~~~e~~~~v~~~le~~   71 (282)
                      ++.||  .+|+    .|+...++|+++.++.+...+.  +-+++..|          -||.+.. . .+.++ .+.+++.
T Consensus        93 l~~Ga--~~vv----igT~a~~~p~~~~~~~~~~g~~--ivvslD~k~~g~~~~v~~~Gw~~~~-~-~~~~~-~~~~~~~  161 (243)
T TIGR01919        93 LTGGR--ARVN----GGTAALENPWWAAAVIRYGGDI--VAVGLDVLEDGEWHTLGNRGWSDGG-G-DLEVL-ERLLDSG  161 (243)
T ss_pred             HHcCC--CEEE----ECchhhCCHHHHHHHHHHcccc--EEEEEEEecCCceEEEECCCeecCC-C-cHHHH-HHHHHhC
Confidence            45566  5676    4888899999999999887543  34555554          2565522 1 22232 3456899


Q ss_pred             CCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEecHHhh
Q 023442           72 PTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAY  146 (282)
Q Consensus        72 Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIGRgal  146 (282)
                      |+..+.++  .|..+.+|.           +++.+.++.+. +++|||++|||.|.+|+.++.+   .|++||++|++++
T Consensus       162 g~~~ii~tdI~~dGt~~G~-----------d~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~  229 (243)
T TIGR01919       162 GCSRVVVTDSKKDGLSGGP-----------NELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY  229 (243)
T ss_pred             CCCEEEEEecCCcccCCCc-----------CHHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence            99999998  466666664           26777777664 6899999999999999998753   5999999999998


Q ss_pred             hCCcc
Q 023442          147 QNPWY  151 (282)
Q Consensus       147 ~nP~i  151 (282)
                      .+-.-
T Consensus       230 ~g~i~  234 (243)
T TIGR01919       230 ARFFT  234 (243)
T ss_pred             cCCCC
Confidence            77643

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.81  E-value=4.2e-08  Score=88.37  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=91.2

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCCcHHHHHHHHHHHHHhCCCCE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHDSYNQLCDFIYKVSSLSPTRH   75 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~~~~e~~~~v~~~le~~Gv~~   75 (282)
                      ++.||  .+|+    .|+..+++|+++.++ .+.-+  .+-+++.+|-      ||.+.... ...+ +++.+++.|+..
T Consensus        92 l~~Ga--~rvv----igT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v~~~gw~~~~~~-~~~e-~~~~~~~~g~~~  160 (241)
T PRK14114         92 RKLGY--RRQI----VSSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKVAFKGWLAEEEI-DPVS-LLKRLKEYGLEE  160 (241)
T ss_pred             HHCCC--CEEE----ECchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEEeeCCCeecCCC-CHHH-HHHHHHhcCCCE
Confidence            45566  5665    588899999999999 55432  3566776653      45443221 1222 234568999999


Q ss_pred             EEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-----C-CCEEEecHHhhh
Q 023442           76 FIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-----G-AHHVMVGRAAYQ  147 (282)
Q Consensus        76 i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-----g-~DgVmIGRgal~  147 (282)
                      +.+.  .|..+.+|.           +++.+.++.+. +++|||++|||.|.+|+.++.+.     | ++||.+|++++.
T Consensus       161 ii~tdI~rdGt~~G~-----------d~el~~~l~~~-~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~  228 (241)
T PRK14114        161 IVHTEIEKDGTLQEH-----------DFSLTRKIAIE-AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLE  228 (241)
T ss_pred             EEEEeechhhcCCCc-----------CHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHC
Confidence            9987  566666664           27778777765 68999999999999999999884     5 999999999877


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      +-.
T Consensus       229 g~i  231 (241)
T PRK14114        229 GIL  231 (241)
T ss_pred             CCC
Confidence            654

>cd04732 HisA HisA

Probab=98.81  E-value=2.4e-08  Score=88.72  Aligned_cols=83  Identities=18%  Similarity=0.333  Sum_probs=68.1

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.|+||.+++.+.+.         +.+++.+.++.+. .++||+++|||.|++|+++++++|||.|++|+
T Consensus        34 ~a~~~~~~g~d~l~v~dl~~~~~~~---------~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs  103 (234)
T cd04732          34 VAKKWEEAGAKWLHVVDLDGAKGGE---------PVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT  103 (234)
T ss_pred             HHHHHHHcCCCEEEEECCCccccCC---------CCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence            4556788999999999887644332         2247888888775 48999999999999999999999999999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      +++.||+++ .++.
T Consensus       104 ~~l~dp~~~-~~i~  116 (234)
T cd04732         104 AAVKNPELV-KELL  116 (234)
T ss_pred             hHHhChHHH-HHHH
Confidence            999999985 5543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.74  E-value=2.2e-07  Score=86.58  Aligned_cols=77  Identities=16%  Similarity=0.096  Sum_probs=59.9

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|+|.|++|++..  .|..+.      ...|..+.++.+. .++|||++|||.+.+++.+++..||||||+|+.
T Consensus       122 a~~a~~~GaD~Ivv~g~ea--gGh~g~------~~~~~ll~~v~~~-~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~  192 (307)
T TIGR03151       122 AKRMEKAGADAVIAEGMES--GGHIGE------LTTMALVPQVVDA-VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTR  192 (307)
T ss_pred             HHHHHHcCCCEEEEECccc--CCCCCC------CcHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence            3456789999999999853  232110      1137778777765 489999999999999999999999999999998


Q ss_pred             hhhCCc
Q 023442          145 AYQNPW  150 (282)
Q Consensus       145 al~nP~  150 (282)
                      ++.-+.
T Consensus       193 f~~t~E  198 (307)
T TIGR03151       193 FLCAKE  198 (307)
T ss_pred             Hhcccc
Confidence            776554

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.72  E-value=1.8e-07  Score=83.88  Aligned_cols=123  Identities=17%  Similarity=0.161  Sum_probs=88.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec-------CCCCCCC-cHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR-------IGVDDHD-SYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR-------~G~d~~~-~~~e~~~~v~~~le~~Gv   73 (282)
                      ++.||  .+|+    .|+...++|+++.++.+..-.. .+-+++..|       -||.+.. +..+    +++.+++.|+
T Consensus        92 l~~Ga--~kvv----igt~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~gw~~~~~~~~e----~~~~l~~~g~  160 (232)
T PRK13586         92 LSLDV--NALV----FSTIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIRGWKEKSMEVID----GIKKVNELEL  160 (232)
T ss_pred             HHCCC--CEEE----ECchhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEccCCeeCCCCHHH----HHHHHHhcCC
Confidence            45666  5666    5889999999999999988322 244555553       2575522 2333    3446789999


Q ss_pred             CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ..|.++  .|..+.+|.           +++.+..+.+ . ..|++++|||.|.+|+.++.+.|+|||++|++++.+
T Consensus       161 ~~ii~tdI~~dGt~~G~-----------d~el~~~~~~-~-~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g  224 (232)
T PRK13586        161 LGIIFTYISNEGTTKGI-----------DYNVKDYARL-I-RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG  224 (232)
T ss_pred             CEEEEecccccccCcCc-----------CHHHHHHHHh-C-CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence            999998  466665664           2676666654 3 345999999999999999988999999999999854

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.72  E-value=1.5e-07  Score=88.18  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEE-ecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCCcc---cCCCCcCCcCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVK-CRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKAL---LNGISPAENRT   95 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvK-iR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt~~---~~G~~~ad~~~   95 (282)
                      +...+.++++.+++.+ ++||.+| +-       +.++     ++.+.++|+|.+.|+   ||...   ..|....+|  
T Consensus       123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-------t~e~-----a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w--  188 (326)
T PRK05458        123 HSDSVINMIQHIKKHLPETFVIAGNVG-------TPEA-----VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW--  188 (326)
T ss_pred             chHHHHHHHHHHHhhCCCCeEEEEecC-------CHHH-----HHHHHHcCcCEEEECCCCCcccccccccCCCCCcc--
Confidence            5678889999999887 4888886 32       2332     234568999999988   33311   123222222  


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                          .+..+.++++. .++|||++|||.++.|+.+++..|||+||+|+.++.
T Consensus       189 ----~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~  235 (326)
T PRK05458        189 ----QLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAG  235 (326)
T ss_pred             ----HHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcC
Confidence                12246677664 479999999999999999999999999999988764

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.71  E-value=7.2e-08  Score=87.31  Aligned_cols=83  Identities=19%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.|+++..+....+.         +.+++.++++.+. .++||+++|||+|.+|+++++..||++|++|++
T Consensus        36 a~~~~~~G~~~l~v~Dl~~~~~~~---------~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~  105 (254)
T TIGR00735        36 AQRYDEEGADELVFLDITASSEGR---------TTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA  105 (254)
T ss_pred             HHHHHHcCCCEEEEEcCCcccccC---------hhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh
Confidence            456678999999999876432121         2358888888775 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhhHh
Q 023442          145 AYQNPWYTLGHVDT  158 (282)
Q Consensus       145 al~nP~if~~~~~~  158 (282)
                      ++.||+++ .++.+
T Consensus       106 ~~~~p~~~-~~~~~  118 (254)
T TIGR00735       106 AVKNPELI-YELAD  118 (254)
T ss_pred             HhhChHHH-HHHHH
Confidence            99999985 55543

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=98.66  E-value=2.1e-07  Score=82.25  Aligned_cols=103  Identities=16%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      .+.++++.+++..++|+.+.+.       +.++.     ..+.+.|++.+.+  |+++......        ....++.+
T Consensus       110 ~~~~~i~~~~~~g~~~iiv~v~-------t~~ea-----~~a~~~G~d~i~~~~~g~t~~~~~~--------~~~~~~~l  169 (219)
T cd04729         110 TLAELIKRIHEEYNCLLMADIS-------TLEEA-----LNAAKLGFDIIGTTLSGYTEETAKT--------EDPDFELL  169 (219)
T ss_pred             CHHHHHHHHHHHhCCeEEEECC-------CHHHH-----HHHHHcCCCEEEccCccccccccCC--------CCCCHHHH
Confidence            7788888887765688877542       22332     2346789999965  4554321111        11237888


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++++.. ++||+++|||.|++++.++++.|||+|++|++++...+
T Consensus       170 ~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~  214 (219)
T cd04729         170 KELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH  214 (219)
T ss_pred             HHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence            8887654 89999999999999999999999999999999766555

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=98.62  E-value=3.8e-07  Score=78.64  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             ccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCC
Q 023442           19 VSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTI   96 (282)
Q Consensus        19 s~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i   96 (282)
                      +..-.||+-+.++++++++.. ..+...+.       +++|..     .+.++|+|.|.-.  |-|..-.+         
T Consensus        72 aT~R~Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~-----~A~~~G~D~I~TTLsGYT~~t~~---------  129 (192)
T PF04131_consen   72 ATDRPRPETLEELIREIKEKY-QLVMADIS-------TLEEAI-----NAAELGFDIIGTTLSGYTPYTKG---------  129 (192)
T ss_dssp             -SSSS-SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHH-----HHHHTT-SEEE-TTTTSSTTSTT---------
T ss_pred             cCCCCCCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHH-----HHHHcCCCEEEcccccCCCCCCC---------
Confidence            345667888999999999987 78887764       455532     3568999998654  33321111         


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ...+|+.+.++++.  ++|||+-|.|.|++++.++++.||++|.+| +++.+|+..
T Consensus       130 ~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG-sAITrP~~I  182 (192)
T PF04131_consen  130 DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG-SAITRPQEI  182 (192)
T ss_dssp             SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE--HHHH-HHHH
T ss_pred             CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC-cccCCHHHH
Confidence            23469999999874  899999999999999999999999999999 788999864

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.62  E-value=4.7e-07  Score=81.07  Aligned_cols=123  Identities=17%  Similarity=0.217  Sum_probs=89.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCC----CCCcHHHHHHHHHHHHHhCCCCEEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD----DHDSYNQLCDFIYKVSSLSPTRHFI   77 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d----~~~~~~e~~~~v~~~le~~Gv~~i~   77 (282)
                      |+.||  .+|+    .|+...++ +++.++++...+. .+-+++-+|-|.-    ...+..+++    +.+++. ++.+.
T Consensus        97 l~~Ga--~~vi----igt~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~li  163 (233)
T cd04723          97 LKRGA--SRVI----VGTETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELL----RRLAKW-PEELI  163 (233)
T ss_pred             HHcCC--CeEE----Ecceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHH----HHHHHh-CCeEE
Confidence            56777  5666    58888999 9999999998542 4567777765511    112344433    345667 88888


Q ss_pred             Eec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           78 IHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        78 VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +..  +....+|.           +++.+.++.+. +++||++.|||.|.+|++++++.|+++|.+|++++.+-
T Consensus       164 ~~di~~~G~~~g~-----------~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~  225 (233)
T cd04723         164 VLDIDRVGSGQGP-----------DLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGG  225 (233)
T ss_pred             EEEcCccccCCCc-----------CHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCC
Confidence            874  33332332           37777788775 68999999999999999999999999999999998774

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=98.61  E-value=6e-07  Score=79.84  Aligned_cols=109  Identities=17%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             hhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--c
Q 023442            9 PKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--S   80 (282)
Q Consensus         9 ~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~   80 (282)
                      .+|+    .|+..+++|+++.++.        +-+++-.|      -||.+  ...++.    ..+++.|+ .+.+.  .
T Consensus       103 ~rvv----igT~a~~~p~~l~~~~--------~vvslD~~~g~v~~~g~~~--~~~~~~----~~~~~~g~-~ii~tdI~  163 (221)
T TIGR00734       103 SRVV----VATETLDITELLRECY--------TVVSLDFKEKFLDASGLFE--SLEEVR----DFLNSFDY-GLIVLDIH  163 (221)
T ss_pred             eEEe----ecChhhCCHHHHHHhh--------hEEEEEeECCccccccccc--cHHHHH----HHHHhcCC-EEEEEECC
Confidence            5565    5888899999988775        13444443      24543  333333    34567888 55554  3


Q ss_pred             CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      |..+.+|.           +++.+.++.+. .++|||+.|||.|++|+.++.+.|+|+|++|++++..
T Consensus       164 ~dGt~~G~-----------d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g  219 (221)
T TIGR00734       164 SVGTMKGP-----------NLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG  219 (221)
T ss_pred             ccccCCCC-----------CHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence            44333332           37888888775 5899999999999999999877999999999998753

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=98.59  E-value=2.7e-07  Score=87.18  Aligned_cols=108  Identities=18%  Similarity=0.293  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++....+.++.+++.+++||.||   |...   .++     ++.+.++|+|.|.|.+.-.    .. -| ..+++  .+.
T Consensus       197 ~~~~~~~~i~~l~~~~~~PvivK---gv~~---~~d-----A~~a~~~G~d~I~vsnhgG----~~-~d-~~~~~--~~~  257 (344)
T cd02922         197 DPTLTWDDIKWLRKHTKLPIVLK---GVQT---VED-----AVLAAEYGVDGIVLSNHGG----RQ-LD-TAPAP--IEV  257 (344)
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEE---cCCC---HHH-----HHHHHHcCCCEEEEECCCc----cc-CC-CCCCH--HHH
Confidence            44566788999999999999999   4432   222     2356789999999975221    11 11 11222  333


Q ss_pred             HHHHHh---cC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          104 YYALLR---DF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       104 i~~l~~---~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.++.+   .. .++|||+.|||.+..|+.+++..|||+|+|||+++..+-
T Consensus       258 L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~  308 (344)
T cd02922         258 LLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS  308 (344)
T ss_pred             HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence            333332   22 369999999999999999999999999999999988664

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=98.58  E-value=5.9e-07  Score=84.33  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCCC
Q 023442           25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIP   97 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~   97 (282)
                      ++.+.++++.+++.. ++||.+    |.-  .+.+.     ++.+.++|+|.|.||..      ++...|..      .|
T Consensus       119 ~~~~~~~i~~ik~~~p~v~Vi~----G~v--~t~~~-----A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g------~p  181 (325)
T cd00381         119 SVYVIEMIKFIKKKYPNVDVIA----GNV--VTAEA-----ARDLIDAGADGVKVGIGPGSICTTRIVTGVG------VP  181 (325)
T ss_pred             cHHHHHHHHHHHHHCCCceEEE----CCC--CCHHH-----HHHHHhcCCCEEEECCCCCcCcccceeCCCC------CC
Confidence            466788888888865 244443    322  12222     23456899999999743      22212221      11


Q ss_pred             CccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           98 PLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        98 ~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                        .+..+.++.+..  .++|||++|||.+..|+.++++.|||+||+|+.+..-..
T Consensus       182 --~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E  234 (325)
T cd00381         182 --QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE  234 (325)
T ss_pred             --HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence              255555554322  269999999999999999999999999999999977654

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=98.58  E-value=1e-06  Score=84.67  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCCC
Q 023442           23 LDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP   98 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~~   98 (282)
                      .+++-+.++++.+++.++ +||.+|.=.+. .   ..+    +++.++..|+|+|+|.+.-.. .|.++.   ++-.+|.
T Consensus       196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-~---~~~----~a~~~~~~g~D~I~VsG~~Gg-tg~~~~~~~~~~g~pt  266 (392)
T cd02808         196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-G---EGD----IAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPT  266 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEEEECCCC-C---HHH----HHHHHHHcCCCEEEEeCCCCC-CCCCcccccccCCccH
Confidence            456778999999999987 99999986542 1   223    345566777999999865311 011110   1111221


Q ss_pred             c-cHHHHHHHHhcC---CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           99 L-KYEYYYALLRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        99 ~-~~~~i~~l~~~~---~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      + .+..+.+.+.+.   .++|||+.|+|.|..|+.+++..|||+|.+||++|.-
T Consensus       267 ~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a  320 (392)
T cd02808         267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA  320 (392)
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence            1 011222222211   3699999999999999999999999999999999854

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.56  E-value=4.4e-07  Score=81.13  Aligned_cols=117  Identities=23%  Similarity=0.390  Sum_probs=80.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecC------CCCCCC--cHHHHHHHHHHHHHhCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI------GVDDHD--SYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~------G~d~~~--~~~e~~~~v~~~le~~Gv   73 (282)
                      ++.||  .+|+    .|++.. +|+++.++.+...   ++-+++..|-      ||.+..  +..++++    .+++. +
T Consensus        92 ~~~G~--~~vi----vGtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~----~~~~~-~  156 (228)
T PRK04128         92 YEIGV--ENVI----IGTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAVKGWLEESSIKVEDAYE----MLKNY-V  156 (228)
T ss_pred             HHCCC--CEEE----ECchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEecCCCeEcCCCCHHHHHH----HHHHH-h
Confidence            45566  4455    367777 8999999988873   2556777664      454422  2334333    44555 7


Q ss_pred             CEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           74 RHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        74 ~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      ..+.++  .|..+.+|.             +   ++.+..+++|||++|||.|.+|+.++.+.|++||++|++++..-
T Consensus       157 ~~ii~t~i~~dGt~~G~-------------d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~  218 (228)
T PRK04128        157 NRFIYTSIERDGTLTGI-------------E---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR  218 (228)
T ss_pred             CEEEEEeccchhcccCH-------------H---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence            778887  455555553             2   23333358999999999999999999989999999999986553

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.55  E-value=6.8e-07  Score=83.52  Aligned_cols=105  Identities=13%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCCc---ccCCCCcCCcCCCCCc
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKA---LLNGISPAENRTIPPL   99 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt~---~~~G~~~ad~~~i~~~   99 (282)
                      +.+.+.++.+++.+..|+-++=-++     +.+ .    ++.+.++|++.|.|+   ||+.   ...|....+|      
T Consensus       122 ~~~~~~i~~i~~~~p~~~vi~GnV~-----t~e-~----a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~------  185 (321)
T TIGR01306       122 NSVINMIKHIKTHLPDSFVIAGNVG-----TPE-A----VRELENAGADATKVGIGPGKVCITKIKTGFGTGGW------  185 (321)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCC-----CHH-H----HHHHHHcCcCEEEECCCCCccccceeeeccCCCch------
Confidence            7888889999988766643332221     222 2    345678999999998   5542   2223211111      


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      ....+.++++. .++|||++|||.+..|+.+++..|||+||+||.+-+
T Consensus       186 ~l~ai~ev~~a-~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag  232 (321)
T TIGR01306       186 QLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG  232 (321)
T ss_pred             HHHHHHHHHHh-cCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC
Confidence            13466677664 489999999999999999999999999999976643

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=98.52  E-value=5.3e-07  Score=85.54  Aligned_cols=102  Identities=19%  Similarity=0.168  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      ++.+..+.|+.+++.++.|+.+|   |.-   +.++     ++.+.+.|+|.|.|+  |.++.. +.         +...
T Consensus       220 d~~~~w~~i~~ir~~~~~pviiK---gV~---~~ed-----a~~a~~~G~d~I~VSnhGGrqld-~~---------~~~~  278 (361)
T cd04736         220 DASFNWQDLRWLRDLWPHKLLVK---GIV---TAED-----AKRCIELGADGVILSNHGGRQLD-DA---------IAPI  278 (361)
T ss_pred             CCcCCHHHHHHHHHhCCCCEEEe---cCC---CHHH-----HHHHHHCCcCEEEECCCCcCCCc-CC---------ccHH
Confidence            45556678899999999999999   442   2232     224568999999985  444321 11         1125


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.++.+.. ++|||+.|||.+..|+.+++..|||+||+||.++.
T Consensus       279 ~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~  323 (361)
T cd04736         279 EALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY  323 (361)
T ss_pred             HHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            6666776643 69999999999999999999999999999998753

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=98.52  E-value=1.3e-06  Score=79.56  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcc--------------
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKAL--------------   84 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~--------------   84 (282)
                      .-.+|  +.+++..++...+.|+.+.++       +++|..     ...+.|+|+|.-++  .|..              
T Consensus        95 ~r~rP--~~~~~~~iK~~~~~l~MAD~s-------tleEal-----~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~  160 (283)
T cd04727          95 EVLTP--ADEEHHIDKHKFKVPFVCGAR-------NLGEAL-----RRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGE  160 (283)
T ss_pred             CCCCc--HHHHHHHHHHHcCCcEEccCC-------CHHHHH-----HHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHH
Confidence            34456  688899998877999988775       344432     23579999997653  3332              


Q ss_pred             ---cCCCCcCC---cCCCCCccHHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           85 ---LNGISPAE---NRTIPPLKYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        85 ---~~G~~~ad---~~~i~~~~~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                         ..|..+..   .....+..|+.+.++++. .++|||  +.|||.|++++.++++.|||+|++|++++.-+
T Consensus       161 i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~  232 (283)
T cd04727         161 IRKLQSMSEEELYAVAKEIQAPYELVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSE  232 (283)
T ss_pred             HHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCC
Confidence               12221111   011124468999888875 479997  99999999999999999999999999998633

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=98.47  E-value=6.7e-07  Score=79.09  Aligned_cols=119  Identities=25%  Similarity=0.379  Sum_probs=75.9

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE-----------e--
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-----------H--   79 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V-----------H--   79 (282)
                      ++.+ |-+-|.||+.+.+|+.+|    ++||..|.|+|.-     .|     +++|+..|+|+|.=           |  
T Consensus        55 R~aG-GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-----~E-----A~iLealgVD~IDESEVLTPAD~~~Hi~  119 (296)
T COG0214          55 RAAG-GVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-----VE-----AQILEALGVDMIDESEVLTPADEEFHIN  119 (296)
T ss_pred             Hhcc-CccccCCHHHHHHHHHhc----ccceeeeeecchh-----HH-----HHHHHHhCCCccccccccCCCchhhhcc
Confidence            3444 889999999988888775    8999999999842     11     34667778877641           1  


Q ss_pred             -----------cCC------c--------ccCCCCcCCc---------------CCCCC--------------ccHHHHH
Q 023442           80 -----------SRK------A--------LLNGISPAEN---------------RTIPP--------------LKYEYYY  105 (282)
Q Consensus        80 -----------~Rt------~--------~~~G~~~ad~---------------~~i~~--------------~~~~~i~  105 (282)
                                 +|+      +        ..+|..+-.+               +.+..              ..|+.+.
T Consensus       120 K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~  199 (296)
T COG0214         120 KWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVK  199 (296)
T ss_pred             hhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHH
Confidence                       111      0        0112111000               00000              0133333


Q ss_pred             HHHhcCCCceE--EEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          106 ALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       106 ~l~~~~~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+++ .-.+||  ++.|||-||.|+.-+++.|||||.+|.|++.
T Consensus       200 ~~~~-~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK  242 (296)
T COG0214         200 EVAK-LGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  242 (296)
T ss_pred             HHHH-hCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence            3333 236787  6899999999999999999999999999744

>PLN02535 glycolate oxidase

Probab=98.47  E-value=5.7e-07  Score=85.44  Aligned_cols=109  Identities=20%  Similarity=0.215  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++.+--+-++.+++.++.||.||=   .-   +.++     ++.+.++|+|.|.|.+--..+.+.+        +...+.
T Consensus       207 ~~~~tW~~i~~lr~~~~~PvivKg---V~---~~~d-----A~~a~~~GvD~I~vsn~GGr~~d~~--------~~t~~~  267 (364)
T PLN02535        207 DASLSWKDIEWLRSITNLPILIKG---VL---TRED-----AIKAVEVGVAGIIVSNHGARQLDYS--------PATISV  267 (364)
T ss_pred             CCCCCHHHHHHHHhccCCCEEEec---CC---CHHH-----HHHHHhcCCCEEEEeCCCcCCCCCC--------hHHHHH
Confidence            444555778888888899999992   21   1122     2345689999999964211111111        112455


Q ss_pred             HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++.+.. .++|||+.|||.+..|+.+++..|||+|+|||.++..+..
T Consensus       268 L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~  316 (364)
T PLN02535        268 LEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAA  316 (364)
T ss_pred             HHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhh
Confidence            55665432 3699999999999999999999999999999999876653

>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=98.46  E-value=6.2e-07  Score=82.43  Aligned_cols=141  Identities=15%  Similarity=0.228  Sum_probs=90.2

Q ss_pred             CccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc-------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC
Q 023442            1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT   73 (282)
Q Consensus         1 ~lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~-------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv   73 (282)
                      +||..||.  +.     |---|+--..+.+.+.++..+       ...|+.+|+-.-... +..+|+    +..+++.++
T Consensus       213 viNvSsPN--tp-----Glr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~-~el~di----a~v~kk~~i  280 (398)
T KOG1436|consen  213 VINVSSPN--TP-----GLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSE-KELKDI----ALVVKKLNI  280 (398)
T ss_pred             EEeccCCC--Cc-----chhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhH-HHHHHH----HHHHHHhCc
Confidence            48999997  22     322233333334444444322       245999999743322 223343    345577899


Q ss_pred             CEEEEecCCc-------------ccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           74 RHFIIHSRKA-------------LLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        74 ~~i~VH~Rt~-------------~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      |.++|..-|-             ...|.+   +..++|+..+.++++.+. .++||||+.|||.|.+||.+.+..||..|
T Consensus       281 dg~IvsnttVsrp~~~~~~~~~~etGGLs---G~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlv  357 (398)
T KOG1436|consen  281 DGLIVSNTTVSRPKASLVNKLKEETGGLS---GPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLV  357 (398)
T ss_pred             cceeecCceeecCccccccccccccCCCC---CCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHH
Confidence            9999975331             123333   234455556666655442 25899999999999999999999999999


Q ss_pred             EecHHh-hhCCccchhhhH
Q 023442          140 MVGRAA-YQNPWYTLGHVD  157 (282)
Q Consensus       140 mIGRga-l~nP~if~~~~~  157 (282)
                      .|+.++ +..|-|| ..|+
T Consensus       358 QlyTal~yeGp~i~-~kIk  375 (398)
T KOG1436|consen  358 QLYTALVYEGPAII-EKIK  375 (398)
T ss_pred             HHHHHHhhcCchhH-HHHH
Confidence            999998 6678775 5444

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=98.46  E-value=7.9e-07  Score=85.02  Aligned_cols=102  Identities=19%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      ++.+--+-++.+++.++.||.+|   |.-.   .++     ++.+.+.|+|.|.|.+  ..+. .+       .++  ..
T Consensus       237 ~~~~tW~~i~~lr~~~~~pvivK---gV~~---~~d-----A~~a~~~G~d~I~vsnhGGr~~-d~-------~~~--t~  295 (383)
T cd03332         237 GPSLTWEDLAFLREWTDLPIVLK---GILH---PDD-----ARRAVEAGVDGVVVSNHGGRQV-DG-------SIA--AL  295 (383)
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEe---cCCC---HHH-----HHHHHHCCCCEEEEcCCCCcCC-CC-------CcC--HH
Confidence            34444566888888889999999   3322   222     2244689999999963  2211 11       112  24


Q ss_pred             HHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          102 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.++.+... ++||++.|||.+..|+.+++..|||+|++||.++
T Consensus       296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l  341 (383)
T cd03332         296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA  341 (383)
T ss_pred             HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence            55556655432 5999999999999999999999999999999887

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=98.43  E-value=3.1e-06  Score=74.66  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      ++.+.++++..+. .++.+.+-+.       +.+++    . .+.+.|++.+.+|+|+....+           .+++.+
T Consensus       107 ~~~~~~~~~~~~~-~g~~~~v~v~-------~~~e~----~-~~~~~g~~~i~~t~~~~~~~~-----------~~~~~~  162 (217)
T cd00331         107 DEQLKELYELARE-LGMEVLVEVH-------DEEEL----E-RALALGAKIIGINNRDLKTFE-----------VDLNTT  162 (217)
T ss_pred             HHHHHHHHHHHHH-cCCeEEEEEC-------CHHHH----H-HHHHcCCCEEEEeCCCccccC-----------cCHHHH
Confidence            3666777776543 3554444442       22332    1 235789999999987643222           125667


Q ss_pred             HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .++++.. .++||++.|||.|++|+.++++.|+|||++|++++..+..
T Consensus       163 ~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p  210 (217)
T cd00331         163 ERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDP  210 (217)
T ss_pred             HHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence            7777654 4799999999999999999999999999999999987764

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=98.42  E-value=2.3e-06  Score=75.69  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC--CcccCCCCcCCcCCCCCccHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R--t~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +.+.++++.+++..++|+.+.+.       +.+++     +.+.+.|++.+.++.+  +.....        ..+..++.
T Consensus       105 ~~~~~~i~~~~~~~~i~vi~~v~-------t~ee~-----~~a~~~G~d~i~~~~~g~t~~~~~--------~~~~~~~~  164 (221)
T PRK01130        105 ETLAELVKRIKEYPGQLLMADCS-------TLEEG-----LAAQKLGFDFIGTTLSGYTEETKK--------PEEPDFAL  164 (221)
T ss_pred             CCHHHHHHHHHhCCCCeEEEeCC-------CHHHH-----HHHHHcCCCEEEcCCceeecCCCC--------CCCcCHHH
Confidence            56778888887644677776432       23332     2456899999987532  211000        01223677


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.++.+. .++||++.|||.|++++.++++.|+|+|++|++++.
T Consensus       165 i~~i~~~-~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~  207 (221)
T PRK01130        165 LKELLKA-VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR  207 (221)
T ss_pred             HHHHHHh-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence            7777765 489999999999999999999999999999988664

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.41  E-value=2.5e-06  Score=77.19  Aligned_cols=123  Identities=22%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             ccccCCchhhcccCcccccccCC----HHHHHHHHHHH-hhcCCccEEEEec-----------CCCCCCCcHHHHH-HHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLD----PKFVGEAMSVI-AANTNVPVSVKCR-----------IGVDDHDSYNQLC-DFI   64 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~----p~~~~eiv~~v-~~~~~ipvsvKiR-----------~G~d~~~~~~e~~-~~v   64 (282)
                      |+.||  .+|+    .|+.+.++    |+++.++.+.. .+.  +-+++..|           -||.+.... ++. ++ 
T Consensus        94 l~aGa--~rVv----IGS~av~~~~i~~~~~~~i~~~fG~~~--IvvsiD~k~~~~g~~~V~~~GW~~~t~~-~~~~e~-  163 (253)
T TIGR02129        94 LDEGA--SHVI----VTSWLFTKGKFDLKRLKEIVSLVGKDR--LIVDLSCRKTQDGRWIVAMNKWQTITDL-ELNAET-  163 (253)
T ss_pred             HHcCC--CEEE----ECcHHHhCCCCCHHHHHHHHHHhCCCC--EEEEEEEEEcCCCcEEEEECCCcccCCC-ChHHHH-
Confidence            45566  5566    47888887    88999999988 343  33333333           257653321 122 22 


Q ss_pred             HHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEE
Q 023442           65 YKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVM  140 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVm  140 (282)
                      ++.+++. +..|.++  .|..+.+|.           +++.+.++.+. +++|||++|||.|.+|+.++.+  .|+.++.
T Consensus       164 ~~~~~~~-~~~il~TdI~rDGtl~G~-----------dlel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g~~~aI  230 (253)
T TIGR02129       164 LEELSKY-CDEFLIHAADVEGLCKGI-----------DEELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKGKVDLT  230 (253)
T ss_pred             HHHHHhh-CCEEEEeeecccCccccC-----------CHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCCCCcEE
Confidence            3445667 9999988  566666664           27777777765 7999999999999999999866  3788899


Q ss_pred             ecHHhhh
Q 023442          141 VGRAAYQ  147 (282)
Q Consensus       141 IGRgal~  147 (282)
                      +|++++.
T Consensus       231 vG~Alf~  237 (253)
T TIGR02129       231 IGSALDI  237 (253)
T ss_pred             eeehHHH
Confidence            9999854

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=98.41  E-value=8.1e-07  Score=84.40  Aligned_cols=102  Identities=24%  Similarity=0.260  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      ++.+.-+-++.+++.+++||.||==+      +.++     ++.+.+.|++.|.|+  |.++.-.|.        +  ..
T Consensus       209 ~~~~~w~~i~~~~~~~~~pvivKgv~------~~~d-----a~~~~~~G~~~i~vs~hGGr~~d~~~--------~--~~  267 (356)
T PF01070_consen  209 DPSLTWDDIEWIRKQWKLPVIVKGVL------SPED-----AKRAVDAGVDGIDVSNHGGRQLDWGP--------P--TI  267 (356)
T ss_dssp             -TT-SHHHHHHHHHHCSSEEEEEEE-------SHHH-----HHHHHHTT-SEEEEESGTGTSSTTS---------B--HH
T ss_pred             CCCCCHHHHHHHhcccCCceEEEecc------cHHH-----HHHHHhcCCCEEEecCCCcccCcccc--------c--cc
Confidence            44455566888899999999999421      2222     234568999999996  444321121        1  14


Q ss_pred             HHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          102 EYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.++.+.. .++|||+.|||++..|+.+++..|||+|.|||.++
T Consensus       268 ~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l  313 (356)
T PF01070_consen  268 DALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFL  313 (356)
T ss_dssp             HHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             cccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHH
Confidence            5555555433 37999999999999999999999999999998764

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=98.38  E-value=2.4e-06  Score=81.23  Aligned_cols=114  Identities=22%  Similarity=0.299  Sum_probs=69.6

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCC
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIP   97 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~   97 (282)
                      ..+++-+.+.|+.+|+.. ++||+||+=.+..    .+.+    +..+.++|+|.|+|.|...- .|-+|.   |+--+|
T Consensus       184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~----~~~~----~~~~~~ag~D~ItIDG~~GG-TGAap~~~~d~~GlP  254 (368)
T PF01645_consen  184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRG----VEDI----AAGAAKAGADFITIDGAEGG-TGAAPLTSMDHVGLP  254 (368)
T ss_dssp             -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT----HHHH----HHHHHHTT-SEEEEE-TT----SSEECCHHHHC---
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCc----HHHH----HHhhhhccCCEEEEeCCCCC-CCCCchhHHhhCCCc
Confidence            456788999999999988 8999999976532    2222    22246899999999986521 122111   111122


Q ss_pred             CccHHH-H---HHHHhc-C--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           98 PLKYEY-Y---YALLRD-F--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        98 ~~~~~~-i---~~l~~~-~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                         |.+ +   .+...+ .  -.+.+++.|+|.|+.|+.+++..|||+|.+||++|-
T Consensus       255 ---~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~li  308 (368)
T PF01645_consen  255 ---TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALI  308 (368)
T ss_dssp             ---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHH
T ss_pred             ---HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhh
Confidence               332 2   222221 1  258999999999999999999999999999999974

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=98.36  E-value=1.4e-06  Score=83.17  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=68.2

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      +-|+.+++.++.||.+|=   .-   +.++     ++.+.++|+|.|.|.  |.++. .+.        ++ ..+.+.++
T Consensus       235 ~di~~lr~~~~~pvivKg---V~---s~~d-----A~~a~~~Gvd~I~Vs~hGGr~~-d~~--------~~-t~~~L~~i  293 (381)
T PRK11197        235 KDLEWIRDFWDGPMVIKG---IL---DPED-----ARDAVRFGADGIVVSNHGGRQL-DGV--------LS-SARALPAI  293 (381)
T ss_pred             HHHHHHHHhCCCCEEEEe---cC---CHHH-----HHHHHhCCCCEEEECCCCCCCC-CCc--------cc-HHHHHHHH
Confidence            447888888999999993   32   2222     234568999999985  43321 111        11 13444455


Q ss_pred             HhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          108 LRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       108 ~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.. .++|||+.|||.+..|+.+++..|||+||+||.++.
T Consensus       294 ~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~  334 (381)
T PRK11197        294 ADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY  334 (381)
T ss_pred             HHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence            4433 369999999999999999999999999999997753

>PLN02979 glycolate oxidase

Probab=98.30  E-value=2.7e-06  Score=80.55  Aligned_cols=105  Identities=18%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++.+--+-++.+++.+++||.||-   .-.   .++     ++.+.++|+|.|.|.+.-..+     .|+  .+ ...+.
T Consensus       207 ~~~ltW~dl~wlr~~~~~PvivKg---V~~---~~d-----A~~a~~~Gvd~I~VsnhGGrq-----ld~--~p-~t~~~  267 (366)
T PLN02979        207 DRTLSWKDVQWLQTITKLPILVKG---VLT---GED-----ARIAIQAGAAGIIVSNHGARQ-----LDY--VP-ATISA  267 (366)
T ss_pred             CCCCCHHHHHHHHhccCCCEEeec---CCC---HHH-----HHHHHhcCCCEEEECCCCcCC-----CCC--ch-hHHHH
Confidence            344444668889999999999994   322   222     234568999999996532111     111  11 12445


Q ss_pred             HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.++.+.. .++|||+.|||.+..|+.+++..|||+|++||.++.
T Consensus       268 L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~  312 (366)
T PLN02979        268 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  312 (366)
T ss_pred             HHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            55554432 369999999999999999999999999999987753

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.30  E-value=3.9e-06  Score=74.71  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=66.1

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.|+++...+...+.         +.+++.+.++++. .++||+++|||.|.+|++++++.||++|++|+
T Consensus        35 ~a~~~~~~g~~~i~i~dl~~~~~~~---------~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~  104 (232)
T TIGR03572        35 AARIYNAKGADELIVLDIDASKRGR---------EPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINT  104 (232)
T ss_pred             HHHHHHHcCCCEEEEEeCCCcccCC---------CCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence            3456789999999999766432221         2347778888775 58999999999999999998889999999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      +++.||.++ .++.
T Consensus       105 ~~l~~~~~~-~~~~  117 (232)
T TIGR03572       105 AALENPDLI-EEAA  117 (232)
T ss_pred             hHhcCHHHH-HHHH
Confidence            999999874 5543

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=98.30  E-value=1.7e-06  Score=75.50  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CCceE--EEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          112 PDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       112 ~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      -.+||  ++.|||.|+.|+.-+++.|||||.+|.|.+..+.=
T Consensus       206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP  247 (296)
T KOG1606|consen  206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP  247 (296)
T ss_pred             CCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCH
Confidence            36888  69999999999999999999999999998666553

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.29  E-value=7.7e-06  Score=72.63  Aligned_cols=82  Identities=23%  Similarity=0.360  Sum_probs=65.7

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.+.+..-.....|.         +.+++.+.++.+. +++||++.|||.|.+|++++++.|||+|++|+
T Consensus        35 ~a~~~~~~g~~~i~v~dld~~~~g~---------~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~  104 (233)
T PRK00748         35 QAKAWEDQGAKWLHLVDLDGAKAGK---------PVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGT  104 (233)
T ss_pred             HHHHHHHcCCCEEEEEeCCccccCC---------cccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence            3556788999999999765433332         1237777778775 58999999999999999999999999999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      .++.+|.++ .++
T Consensus       105 ~~l~~~~~l-~ei  116 (233)
T PRK00748        105 AAVKNPELV-KEA  116 (233)
T ss_pred             hHHhCHHHH-HHH
Confidence            999999764 444

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.23  E-value=6.6e-06  Score=73.57  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=61.7

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      +.+.+.|++.+++--.+....+.         ...++.+.++++.. ++|++.+|||+|.+|++.+++.|||+|++|..+
T Consensus        39 ~~~~~~G~~~l~i~dl~~~~~~~---------~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~  108 (241)
T PRK13585         39 KRWVDAGAETLHLVDLDGAFEGE---------RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA  108 (241)
T ss_pred             HHHHHcCCCEEEEEechhhhcCC---------cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            34567999987443222221221         12377888888764 799999999999999999999999999999999


Q ss_pred             hhCCccchhhhHh
Q 023442          146 YQNPWYTLGHVDT  158 (282)
Q Consensus       146 l~nP~if~~~~~~  158 (282)
                      +.+|.++ .++.+
T Consensus       109 ~~~~~~~-~~i~~  120 (241)
T PRK13585        109 VENPEIV-RELSE  120 (241)
T ss_pred             hhChHHH-HHHHH
Confidence            9999985 55543

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.18  E-value=8.6e-06  Score=73.01  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.+-.+|..-. +|.        ...+.+.+..+++. +++|||..|||.|++|+.++++.|||||++|.|
T Consensus       137 ar~l~~~G~~~vmPlg~pIG-sg~--------Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SA  206 (248)
T cd04728         137 AKRLEDAGCAAVMPLGSPIG-SGQ--------GLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA  206 (248)
T ss_pred             HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            45567888888866665421 111        11236777777765 689999999999999999999999999999988


Q ss_pred             hhh--CCcc
Q 023442          145 AYQ--NPWY  151 (282)
Q Consensus       145 al~--nP~i  151 (282)
                      +..  ||..
T Consensus       207 It~a~dP~~  215 (248)
T cd04728         207 IAKAKDPVA  215 (248)
T ss_pred             hcCCCCHHH
Confidence            864  3544

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=98.17  E-value=8.1e-06  Score=77.66  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.+--+-++.+++.++.||.||=   .-.   .++     ++.+.++|+|.|.|.+.-..+.     |+  .+ .-.+.+
T Consensus       209 ~~~tW~di~wlr~~~~~PiivKg---V~~---~~d-----A~~a~~~Gvd~I~VsnhGGrql-----d~--~~-~t~~~L  269 (367)
T PLN02493        209 RTLSWKDVQWLQTITKLPILVKG---VLT---GED-----ARIAIQAGAAGIIVSNHGARQL-----DY--VP-ATISAL  269 (367)
T ss_pred             CCCCHHHHHHHHhccCCCEEeec---CCC---HHH-----HHHHHHcCCCEEEECCCCCCCC-----CC--ch-hHHHHH
Confidence            33344557888888999999993   322   222     2345689999999964321111     11  11 124455


Q ss_pred             HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++.+.. .++|||+.|||.+..|+.+++..|||+|+|||.++.
T Consensus       270 ~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~  313 (367)
T PLN02493        270 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  313 (367)
T ss_pred             HHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            5554432 369999999999999999999999999999998753

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.16  E-value=2.1e-05  Score=70.88  Aligned_cols=134  Identities=17%  Similarity=0.206  Sum_probs=82.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHH-----HHHHHHhhcCCccEE--EEecCCCCCCCcHHHHHHHHHHHHHhCCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVG-----EAMSVIAANTNVPVS--VKCRIGVDDHDSYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~-----eiv~~v~~~~~ipvs--vKiR~G~d~~~~~~e~~~~v~~~le~~Gv~   74 (282)
                      ||+-||.+. .  +  |..+.+.++.+.     ++++++++.+++|+.  +|...-..   ..++   + .+.+.++|++
T Consensus        36 lgip~sdp~-a--d--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~---~~~~---~-i~~~~~~Gad  103 (244)
T PRK13125         36 LGIPPKYPK-Y--D--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD---SLDN---F-LNMARDVGAD  103 (244)
T ss_pred             ECCCCCCCC-C--C--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh---CHHH---H-HHHHHHcCCC
Confidence            677787752 2  2  777788888877     899999988899973  55443111   1222   2 2234567777


Q ss_pred             EEEEec-----------------------------CCc--------------ccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 023442           75 HFIIHS-----------------------------RKA--------------LLNGISPAENRTIPPLKYEYYYALLRDF  111 (282)
Q Consensus        75 ~i~VH~-----------------------------Rt~--------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~  111 (282)
                      .+++|.                             .|.              .|.+..+-.+..+++--.+.+.++.+..
T Consensus       104 gvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~  183 (244)
T PRK13125        104 GVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV  183 (244)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc
Confidence            777762                             110              0011111111111111123445554433


Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.||+.-|||.|++++.++++.|||+|.+|.+++.
T Consensus       184 ~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        184 GNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            357899999999999999999999999999998864

>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]

Probab=98.16  E-value=1.6e-06  Score=80.57  Aligned_cols=136  Identities=15%  Similarity=0.244  Sum_probs=99.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V---   78 (282)
                      +|+.||..+-. +|+ |.++-+.|..+.||...|+..+.+|+.-|+-..+.+..   +    +++.....|+..|+-   
T Consensus       237 ~nlscphgm~e-rgm-gla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~r---e----var~~~~~g~~GiaA~NT  307 (471)
T KOG1799|consen  237 TNLSCPHGMCE-RGM-GLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKR---E----VARSVNPVGCEGIAAINT  307 (471)
T ss_pred             ccCCCCCCCcc-ccc-cceeccChhhhHHHhhhhhhccccccccccCCCccccc---c----cchhcCcccccchhhHhH
Confidence            79999998655 576 99999999999999999999999999999987665521   1    233344555555431   


Q ss_pred             ------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           79 ------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        79 ------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                                        .+|+ .+.|.|   +..+.|+....+..+++.....|+.+-|||.|.+|+..++..|+.-|.
T Consensus       308 i~SvM~i~~~~~~P~~~~~~~s-T~GG~S---~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQ  383 (471)
T KOG1799|consen  308 IMSVMGIDMKTLRPEPCVEGYS-TPGGYS---YKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQ  383 (471)
T ss_pred             HHHHhcccccccCCCccccccc-CCCCcc---ccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcCCcHhh
Confidence                              1222 233432   345778777777666665446789999999999999999998888888


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +..|.+..-+
T Consensus       384 VCt~V~~~~~  393 (471)
T KOG1799|consen  384 VCTGVMMHGY  393 (471)
T ss_pred             hhhHHHhcCc
Confidence            8877765543

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=98.13  E-value=1.4e-05  Score=70.95  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=58.1

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|++.|.+|++..  .|.....    ....++.+.++++. .++||+++|||.+++++.++++.|+|||++|++++.
T Consensus       118 ~~~~gad~i~~~~~~~--~G~~~~~----~~~~~~~i~~i~~~-~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~  190 (236)
T cd04730         118 AEAAGADALVAQGAEA--GGHRGTF----DIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA  190 (236)
T ss_pred             HHHcCCCEEEEeCcCC--CCCCCcc----ccCHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence            4568999999998632  2221110    01236777777654 489999999999999999999999999999999988


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .+..
T Consensus       191 ~~e~  194 (236)
T cd04730         191 TEES  194 (236)
T ss_pred             Cccc
Confidence            7764

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.13  E-value=1.1e-05  Score=72.00  Aligned_cols=80  Identities=19%  Similarity=0.342  Sum_probs=63.0

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++. ++.|++-.+++...|.         +.+++.+.++.+. +++||++.|||.|.+|++++++.|+|+|.+|++
T Consensus        36 a~~~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGta  104 (228)
T PRK04128         36 ALRFSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTK  104 (228)
T ss_pred             HHHHHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence            3455666 9988886665444443         2247778888775 689999999999999999999999999999999


Q ss_pred             hhhCCccchhhhH
Q 023442          145 AYQNPWYTLGHVD  157 (282)
Q Consensus       145 al~nP~if~~~~~  157 (282)
                      ++ ||.+ .+++.
T Consensus       105 a~-~~~~-l~~~~  115 (228)
T PRK04128        105 AF-DLEF-LEKVT  115 (228)
T ss_pred             hc-CHHH-HHHHH
Confidence            99 9996 45543

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.10  E-value=1.7e-05  Score=71.14  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.|-.+|..-. +|.        ...+.+.+..+++. +++|||..|||.|++|+.++++.|||||++|.|
T Consensus       137 ak~l~~~G~~~vmPlg~pIG-sg~--------gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SA  206 (250)
T PRK00208        137 AKRLEEAGCAAVMPLGAPIG-SGL--------GLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA  206 (250)
T ss_pred             HHHHHHcCCCEeCCCCcCCC-CCC--------CCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            45567788888866554421 111        11235667777665 689999999999999999999999999999988


Q ss_pred             hhh--CCcc
Q 023442          145 AYQ--NPWY  151 (282)
Q Consensus       145 al~--nP~i  151 (282)
                      +..  ||..
T Consensus       207 Itka~dP~~  215 (250)
T PRK00208        207 IAVAGDPVA  215 (250)
T ss_pred             hhCCCCHHH
Confidence            864  3544

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.06  E-value=4e-05  Score=66.82  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             cccccCCHH-HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE--EecCCcccCCCCcCCcC
Q 023442           18 GVSLMLDPK-FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI--IHSRKALLNGISPAENR   94 (282)
Q Consensus        18 Gs~Ll~~p~-~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~--VH~Rt~~~~G~~~ad~~   94 (282)
                      -+..-.||+ -+.++++..+ ..+.-+...+       ++++|..     .+.++|+|.|-  ++|-|..  +..+    
T Consensus       105 DaT~R~RP~~~~~~~i~~~k-~~~~l~MAD~-------St~ee~l-----~a~~~G~D~IGTTLsGYT~~--~~~~----  165 (229)
T COG3010         105 DATDRPRPDGDLEELIARIK-YPGQLAMADC-------STFEEGL-----NAHKLGFDIIGTTLSGYTGY--TEKP----  165 (229)
T ss_pred             ecccCCCCcchHHHHHHHhh-cCCcEEEecc-------CCHHHHH-----HHHHcCCcEEecccccccCC--CCCC----
Confidence            456677888 8888888843 3355555544       3455533     24689999883  4554431  0111    


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        ...+++.++++.+  .+++||+-|.+.||++++++++.||++|.+| +++.+|.-
T Consensus       166 --~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG-sAITRp~~  217 (229)
T COG3010         166 --TEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVG-SAITRPEE  217 (229)
T ss_pred             --CCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEEC-cccCCHHH
Confidence              1225888888876  5899999999999999999999999999999 88888863

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.04  E-value=3.2e-05  Score=77.22  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             ccccCCchhhcccCcccccccCC------------HHHHHHHHHHHhhcCCccEEEEecC--------------------
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLD------------PKFVGEAMSVIAANTNVPVSVKCRI--------------------   49 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~------------p~~~~eiv~~v~~~~~ipvsvKiR~--------------------   49 (282)
                      |+.||  .||+    .|++..++            |+++.++.+..-+. .+-|++..|-                    
T Consensus       344 l~~Ga--dkV~----i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q-~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~  416 (538)
T PLN02617        344 FRSGA--DKIS----IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQ-AVVVSIDPRRVYVKDPSDVPFKTVKVTNPG  416 (538)
T ss_pred             HHcCC--CEEE----EChHHHhChhhhhccccccCHHHHHHHHHHcCCc-eEEEEEecCcCcccCccccccccccccccC
Confidence            56677  6777    46666665            69999999988543 1233333321                    


Q ss_pred             --------------CCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC
Q 023442           50 --------------GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPD  113 (282)
Q Consensus        50 --------------G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~  113 (282)
                                    ||.+...+ +..+ .++.+++.|+..|.+.  .|..+.+|.           +.+.+.++.+. ++
T Consensus       417 ~~~~~~~~~~v~~~gg~~~~~~-~~~~-~~~~~~~~Gageil~t~id~DGt~~G~-----------d~~l~~~v~~~-~~  482 (538)
T PLN02617        417 PNGEEYAWYQCTVKGGREGRPI-GAYE-LAKAVEELGAGEILLNCIDCDGQGKGF-----------DIELVKLVSDA-VT  482 (538)
T ss_pred             cCcccceEEEEEEecCcccCCC-CHHH-HHHHHHhcCCCEEEEeeccccccccCc-----------CHHHHHHHHhh-CC
Confidence                          34332221 1222 3456789999999887  455555554           26666666654 69


Q ss_pred             ceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          114 LTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       114 ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +|||++||+.+++|+.+++. +|+|+++.|
T Consensus       483 ipviasGG~g~~~d~~~~~~~~~~~a~~aa  512 (538)
T PLN02617        483 IPVIASSGAGTPEHFSDVFSKTNASAALAA  512 (538)
T ss_pred             CCEEEECCCCCHHHHHHHHhcCCccEEEEE
Confidence            99999999999999999998 889999998

>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]

Probab=98.04  E-value=1.9e-05  Score=75.25  Aligned_cols=138  Identities=13%  Similarity=0.067  Sum_probs=82.9

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCC--ccEEEEecCC-CCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcc-cCC
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTN--VPVSVKCRIG-VDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-LNG   87 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~--ipvsvKiR~G-~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-~~G   87 (282)
                      +++.||+++.++.+++.|++++|++.+.  .+..+-.+.+ +.+. .+.++.. .++.++++.|+|.+-+.+++.. +.+
T Consensus       212 RtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~-~~~~~y~~~g~df~~l~~g~~~~~~h  290 (400)
T KOG0134|consen  212 RTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAI-KMCGLYEDGGLDFVELTGGTFLAYVH  290 (400)
T ss_pred             cccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchhhhhccccccchH-HHHHHHHhcccchhhccCchhhhhhh
Confidence            5789999999999999999999999873  2222222211 0110 1222222 2345678889996555544321 110


Q ss_pred             CCcCCcCCCCCccHHHH---HHHHhcCCCce-EEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442           88 ISPAENRTIPPLKYEYY---YALLRDFPDLT-FTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus        88 ~~~ad~~~i~~~~~~~i---~~l~~~~~~ip-Vi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      .  ..-+.--+.++..+   .+-.+..-+.+ |.++|+.++.+.+.++++ ...|+|..||.++.||+|..
T Consensus       291 ~--i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~  359 (400)
T KOG0134|consen  291 F--IEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPK  359 (400)
T ss_pred             h--ccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhH
Confidence            0  00000001112222   12222222444 457889999999999999 66889999999999999963

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.02  E-value=0.00017  Score=65.63  Aligned_cols=104  Identities=17%  Similarity=0.127  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++.+.++++..++ .+..+.|-+.       +.+|+    . .+.++|++.|.+|+|+....           ....+.
T Consensus       145 ~~~~l~~li~~a~~-lGl~~lvevh-------~~~E~----~-~A~~~gadiIgin~rdl~~~-----------~~d~~~  200 (260)
T PRK00278        145 DDEQLKELLDYAHS-LGLDVLVEVH-------DEEEL----E-RALKLGAPLIGINNRNLKTF-----------EVDLET  200 (260)
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHH----H-HHHHcCCCEEEECCCCcccc-----------cCCHHH
Confidence            45678888888765 3666666543       23343    2 23478999999999874211           112566


Q ss_pred             HHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++++..++ +|+|+-|||.|++|+.++++.|+|+|.||++++..+..
T Consensus       201 ~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp  249 (260)
T PRK00278        201 TERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRADDP  249 (260)
T ss_pred             HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence            6677665554 69999999999999999999999999999999988875

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.00  E-value=4e-05  Score=73.83  Aligned_cols=105  Identities=15%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i   96 (282)
                      +.+.+.++++.+++.+ +.+|.++-   .   .+.++     ++.+.++|+|.|.|--.      |+...|..      .
T Consensus       177 ~~~~~~~~v~~ik~~~p~~~vi~g~---V---~T~e~-----a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g------~  239 (404)
T PRK06843        177 HSTRIIELVKKIKTKYPNLDLIAGN---I---VTKEA-----ALDLISVGADCLKVGIGPGSICTTRIVAGVG------V  239 (404)
T ss_pred             CChhHHHHHHHHHhhCCCCcEEEEe---c---CCHHH-----HHHHHHcCCCEEEECCCCCcCCcceeecCCC------C
Confidence            3556667777777665 55555532   1   12322     23456899999986311      11112221      1


Q ss_pred             CCccHHHH---HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           97 PPLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        97 ~~~~~~~i---~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      |  .+..+   .++++. .++|||+-|+|.++.|+.+++..|||+||+|+.+.+-
T Consensus       240 p--~ltai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt  291 (404)
T PRK06843        240 P--QITAICDVYEVCKN-TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT  291 (404)
T ss_pred             C--hHHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence            1  23433   444443 4799999999999999999999999999999988663

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.99  E-value=7.8e-05  Score=73.45  Aligned_cols=104  Identities=19%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCC
Q 023442           23 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRT   95 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~   95 (282)
                      -+++.+.++++.+++.. ++||.+    |.-  .+.+.     ++.+.++|+|.|-|-++      |+.+.|.+.     
T Consensus       248 g~~~~~~~~i~~i~~~~~~~~vi~----g~~--~t~~~-----~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~-----  311 (475)
T TIGR01303       248 GHQVKMISAIKAVRALDLGVPIVA----GNV--VSAEG-----VRDLLEAGANIIKVGVGPGAMCTTRMMTGVGR-----  311 (475)
T ss_pred             CCcHHHHHHHHHHHHHCCCCeEEE----ecc--CCHHH-----HHHHHHhCCCEEEECCcCCccccCccccCCCC-----
Confidence            36788999999999865 789887    321  22322     23456899999997643      223333221     


Q ss_pred             CCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           96 IPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        96 i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                       |.  ...+.++   +++. ++|||+.|||.++.|+.+++..|||+||+|+-+-
T Consensus       312 -~~--~~a~~~~~~~~~~~-~~~viadGgi~~~~di~kala~GA~~vm~g~~~a  361 (475)
T TIGR01303       312 -PQ--FSAVLECAAEARKL-GGHVWADGGVRHPRDVALALAAGASNVMVGSWFA  361 (475)
T ss_pred             -ch--HHHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhc
Confidence             11  2333333   3333 7999999999999999999999999999997664

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.97  E-value=3.6e-05  Score=76.11  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCCCC
Q 023442           26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIPP   98 (282)
Q Consensus        26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~   98 (282)
                      ..+.+.++.+++.. +.||.++-   .   .+.++     ++.+.++|++.|.|-..      |+...|..      +| 
T Consensus       254 ~~vl~~i~~i~~~~p~~~vi~g~---v---~t~e~-----a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g------~p-  315 (486)
T PRK05567        254 EGVLDRVREIKAKYPDVQIIAGN---V---ATAEA-----ARALIEAGADAVKVGIGPGSICTTRIVAGVG------VP-  315 (486)
T ss_pred             hhHHHHHHHHHhhCCCCCEEEec---c---CCHHH-----HHHHHHcCCCEEEECCCCCccccceeecCCC------cC-
Confidence            34556677777765 67777632   1   12322     22356899999976311      12222221      12 


Q ss_pred             ccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           99 LKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        99 ~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                       .++.+.++.+.  ..++|||+.|||.++.|+.+++..|||+||+|..+ ..|
T Consensus       316 -~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~-a~~  366 (486)
T PRK05567        316 -QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSML-AGT  366 (486)
T ss_pred             -HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccc-ccc
Confidence             25666555442  13799999999999999999999999999999654 444

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.95  E-value=5.7e-05  Score=67.04  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.++|..-.....|.         +.+++.+.++.+. .++||...|+|.+.+|++++++.|||.|++|.
T Consensus        33 ~a~~~~~~g~~~l~v~dl~~~~~g~---------~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs  102 (230)
T TIGR00007        33 AAKKWEEEGAERIHVVDLDGAKEGG---------PVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT  102 (230)
T ss_pred             HHHHHHHcCCCEEEEEeCCccccCC---------CCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECh
Confidence            3556789999999998655433332         1236777788775 58999999999999999999999999999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      .++.||..+ .++.
T Consensus       103 ~~l~d~~~~-~~~~  115 (230)
T TIGR00007       103 AAVENPDLV-KELL  115 (230)
T ss_pred             HHhhCHHHH-HHHH
Confidence            999999875 4443

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK07695 transcriptional regulator TenI; Provisional

Probab=97.93  E-value=7.2e-05  Score=65.24  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=55.0

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+++.|+|.+.++.-.....    ..  ..++..++.+.++.+. .++||++.||| +++++.+++++|+|+|++|+++.
T Consensus       110 ~a~~~Gadyi~~g~v~~t~~----k~--~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~  181 (201)
T PRK07695        110 QAEKNGADYVVYGHVFPTDC----KK--GVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIF  181 (201)
T ss_pred             HHHHcCCCEEEECCCCCCCC----CC--CCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHh
Confidence            35678999997653211100    00  1133457888777664 47999999999 99999999999999999999997


Q ss_pred             hCCc
Q 023442          147 QNPW  150 (282)
Q Consensus       147 ~nP~  150 (282)
                      ..+.
T Consensus       182 ~~~~  185 (201)
T PRK07695        182 SSAN  185 (201)
T ss_pred             cCCC
Confidence            5443

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=97.93  E-value=1.6e-05  Score=75.47  Aligned_cols=104  Identities=20%  Similarity=0.183  Sum_probs=66.7

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      .+|-...+.+..+++.+..|+.+|   |...   .++.    . .+-+.|++.|.++  +..+...|.+          .
T Consensus       201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~---~~D~----~-~a~~tg~~~I~vsnhggrqlD~g~s----------t  259 (360)
T COG1304         201 SVPVISKEDGAGISKEWAGPLVLK---GILA---PEDA----A-GAGGTGADGIEVSNHGGRQLDWGIS----------T  259 (360)
T ss_pred             CCCcccHHHHhHHHHhcCCcHHHh---CCCC---HHHH----H-hhccCCceEEEEEcCCCccccCCCC----------h
Confidence            344445555555555555555443   3332   1232    1 2347889999995  4332222221          1


Q ss_pred             HHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+.++....+ .++|++.|||+|..|+.+++..|||+|++||..+.
T Consensus       260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~  307 (360)
T COG1304         260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY  307 (360)
T ss_pred             HHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHH
Confidence            455666666555 49999999999999999999999999999998754

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.93  E-value=6.6e-05  Score=73.53  Aligned_cols=106  Identities=17%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cC----CcccCCCCcCCcCCCCC
Q 023442           26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SR----KALLNGISPAENRTIPP   98 (282)
Q Consensus        26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~R----t~~~~G~~~ad~~~i~~   98 (282)
                      ..+.+.++.+++.. ++||.++.   .   .+.++     ++.+.++|+|+|.|.  +.    |+...|..      .|.
T Consensus       250 ~~~~~~i~~i~~~~~~~~vi~G~---v---~t~~~-----a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g------~p~  312 (450)
T TIGR01302       250 IYVIDSIKEIKKTYPDLDIIAGN---V---ATAEQ-----AKALIDAGADGLRVGIGPGSICTTRIVAGVG------VPQ  312 (450)
T ss_pred             hHHHHHHHHHHHhCCCCCEEEEe---C---CCHHH-----HHHHHHhCCCEEEECCCCCcCCccceecCCC------ccH
Confidence            56777788888773 77887742   1   12222     233567999999864  21    22222221      111


Q ss_pred             ccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           99 LKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        99 ~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        ...+.++   +++ .++|||+.|||.++.|+.++++.|||+||+|+.+.+-...
T Consensus       313 --~~~i~~~~~~~~~-~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~  365 (450)
T TIGR01302       313 --ITAVYDVAEYAAQ-SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTES  365 (450)
T ss_pred             --HHHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcC
Confidence              3444444   333 4799999999999999999999999999999777655543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.93  E-value=5.2e-05  Score=67.24  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..++.|+|.|+.--=|....|.         .+.++.+.+.++. ..||+...|||.|.+|+.+++..|||=|.|..
T Consensus        35 lA~~Y~e~GADElvFlDItAs~~gr---------~~~~~vv~r~A~~-vfiPltVGGGI~s~eD~~~ll~aGADKVSINs  104 (256)
T COG0107          35 LAKRYNEEGADELVFLDITASSEGR---------ETMLDVVERVAEQ-VFIPLTVGGGIRSVEDARKLLRAGADKVSINS  104 (256)
T ss_pred             HHHHHHHcCCCeEEEEecccccccc---------hhHHHHHHHHHhh-ceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence            3567789999999875444322221         2247888888875 58999999999999999999999999999999


Q ss_pred             HhhhCCccc
Q 023442          144 AAYQNPWYT  152 (282)
Q Consensus       144 gal~nP~if  152 (282)
                      +|+.||.+.
T Consensus       105 aAv~~p~lI  113 (256)
T COG0107         105 AAVKDPELI  113 (256)
T ss_pred             hHhcChHHH
Confidence            999999975

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.88  E-value=0.00016  Score=71.76  Aligned_cols=104  Identities=15%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cC----CcccCCCCcCCcCCCCCc
Q 023442           27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SR----KALLNGISPAENRTIPPL   99 (282)
Q Consensus        27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~R----t~~~~G~~~ad~~~i~~~   99 (282)
                      .+.+.++.+++.. +.+|.++-   .   .+.++     ++.+.++|+|.|.|.  +.    |+...|..   ...  ..
T Consensus       275 ~~~~~i~~ik~~~p~~~vi~g~---v---~t~e~-----a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g---~~~--~~  338 (505)
T PLN02274        275 YQLEMIKYIKKTYPELDVIGGN---V---VTMYQ-----AQNLIQAGVDGLRVGMGSGSICTTQEVCAVG---RGQ--AT  338 (505)
T ss_pred             HHHHHHHHHHHhCCCCcEEEec---C---CCHHH-----HHHHHHcCcCEEEECCCCCccccCccccccC---CCc--cc
Confidence            3446666666654 45554431   1   12332     234568999999773  32    11111110   001  11


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+..+.++++. .++|||+-|||.+..|+.+++..|||+||+|..+..
T Consensus       339 ~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~  385 (505)
T PLN02274        339 AVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAG  385 (505)
T ss_pred             HHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence            24445666664 479999999999999999999999999999977654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.88  E-value=0.00012  Score=72.12  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---c---CCcccCCCCcCCcCCCCC
Q 023442           26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---S---RKALLNGISPAENRTIPP   98 (282)
Q Consensus        26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~---Rt~~~~G~~~ad~~~i~~   98 (282)
                      ..+.++++.+++.. +.+|.+.    .  -.+.++     ++.+.++|+|.|-|=   |   -|+.+.|.+.      | 
T Consensus       253 ~~~~~~i~~ik~~~p~~~v~ag----n--v~t~~~-----a~~l~~aGad~v~vgig~gsictt~~~~~~~~------p-  314 (479)
T PRK07807        253 EKMLEALRAVRALDPGVPIVAG----N--VVTAEG-----TRDLVEAGADIVKVGVGPGAMCTTRMMTGVGR------P-  314 (479)
T ss_pred             HHHHHHHHHHHHHCCCCeEEee----c--cCCHHH-----HHHHHHcCCCEEEECccCCcccccccccCCch------h-
Confidence            45556666666554 4555441    1  112322     233567999999863   1   2334444332      1 


Q ss_pred             ccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           99 LKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        99 ~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                       .+..+.++++.  ..++|||+-|+|.++.|+.+++..|||+||+|..+.+-.
T Consensus       315 -~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~  366 (479)
T PRK07807        315 -QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY  366 (479)
T ss_pred             -HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence             26777666542  237999999999999999999999999999998886554

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.85  E-value=0.0001  Score=66.14  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             HHHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           65 YKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        65 ~~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      ++.+.+ .|++.|+|--=+....|.         +.+++.+.++++. +.+||...|||+|.+|++++++.||+-|.+|.
T Consensus        37 a~~~~~~~Ga~~l~ivDLd~a~~~~---------~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt  106 (234)
T PRK13587         37 IAYYSQFECVNRIHIVDLIGAKAQH---------AREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT  106 (234)
T ss_pred             HHHHHhccCCCEEEEEECcccccCC---------cchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence            445666 799999886433221221         2247788888874 68999999999999999999999999999999


Q ss_pred             HhhhCCccchhhhHh
Q 023442          144 AAYQNPWYTLGHVDT  158 (282)
Q Consensus       144 gal~nP~if~~~~~~  158 (282)
                      .++.||.++ +++..
T Consensus       107 ~a~~~~~~l-~~~~~  120 (234)
T PRK13587        107 KGIQDTDWL-KEMAH  120 (234)
T ss_pred             hHhcCHHHH-HHHHH
Confidence            999999975 55543

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.85  E-value=0.0001  Score=66.98  Aligned_cols=81  Identities=16%  Similarity=0.235  Sum_probs=64.1

Q ss_pred             HHHHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           64 IYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +++.+++.|++.|.+.-  +....+|           .+++.+.++++. +.+||++.|||.|.+|++++++.|+++|.+
T Consensus        35 ~a~~~~~~g~~~l~i~Dl~~~~~~~~-----------~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvi  102 (258)
T PRK01033         35 AVRIFNEKEVDELIVLDIDASKRGSE-----------PNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSI  102 (258)
T ss_pred             HHHHHHHcCCCEEEEEECCCCcCCCc-----------ccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence            34567899999999863  3322122           247888888875 589999999999999999999999999999


Q ss_pred             cHHhhhCCccchhhhH
Q 023442          142 GRAAYQNPWYTLGHVD  157 (282)
Q Consensus       142 GRgal~nP~if~~~~~  157 (282)
                      |.+++.+|.++ .++.
T Consensus       103 gs~~~~~~~~~-~~~~  117 (258)
T PRK01033        103 NTAALEDPDLI-TEAA  117 (258)
T ss_pred             ChHHhcCHHHH-HHHH
Confidence            99999999875 5543

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.84  E-value=0.00043  Score=58.98  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.+.+.++++.+.+  ++|+.++.+.+..  .+.+++.+ +.+++++.|++.|-.+....  .+.          .++
T Consensus        95 ~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~-~~~~~~~~g~~~iK~~~~~~--~~~----------~~~  159 (201)
T cd00945          95 DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAK-AARIAAEAGADFIKTSTGFG--GGG----------ATV  159 (201)
T ss_pred             CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHH-HHHHHHHhCCCEEEeCCCCC--CCC----------CCH
Confidence            3678888888988874  8999999987765  12233333 35566789999998775321  111          125


Q ss_pred             HHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          102 EYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.++++..+ ++||+..||+.+++++..++..||+|+++|
T Consensus       160 ~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         160 EDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             HHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence            66666666543 689999999999999999999999999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=97.84  E-value=0.0002  Score=67.08  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             HHHhCCCCEEEEe------cCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442           67 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHH  138 (282)
Q Consensus        67 ~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~Dg  138 (282)
                      .+.++|+|.|.|.      ..|+...|..-      |  .+..+.++++..  .++|||+-|||.+.-|+.+++..|||+
T Consensus       166 ~Li~aGAD~ikVgiGpGSicttR~~~Gvg~------p--qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~  237 (343)
T TIGR01305       166 ELILSGADIVKVGIGPGSVCTTRTKTGVGY------P--QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADF  237 (343)
T ss_pred             HHHHcCCCEEEEcccCCCcccCceeCCCCc------C--HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCE
Confidence            4568999999875      12334444421      1  155555554422  379999999999999999999999999


Q ss_pred             EEec
Q 023442          139 VMVG  142 (282)
Q Consensus       139 VmIG  142 (282)
                      ||+|
T Consensus       238 VMlG  241 (343)
T TIGR01305       238 VMLG  241 (343)
T ss_pred             EEEC
Confidence            9999

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.83  E-value=7.9e-05  Score=73.84  Aligned_cols=103  Identities=17%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCC---cccCCCCcCCcCCCC
Q 023442           25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRK---ALLNGISPAENRTIP   97 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt---~~~~G~~~ad~~~i~   97 (282)
                      ...+.+.++.+++.. ++||.++.   .   .+.++     ++.+.++|+|+|.|-   |.+   +...|.+      +|
T Consensus       266 s~~~~~~i~~ik~~~~~~~v~aG~---V---~t~~~-----a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g------~p  328 (495)
T PTZ00314        266 SIYQIDMIKKLKSNYPHVDIIAGN---V---VTADQ-----AKNLIDAGADGLRIGMGSGSICITQEVCAVG------RP  328 (495)
T ss_pred             chHHHHHHHHHHhhCCCceEEECC---c---CCHHH-----HHHHHHcCCCEEEECCcCCcccccchhccCC------CC
Confidence            344566777777764 56665521   1   12222     234568999999862   211   1122221      12


Q ss_pred             CccHHHH---HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           98 PLKYEYY---YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        98 ~~~~~~i---~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .  +..+   .+.+++ .++|||+.|||.++.|+.+++..|||+||+|+.+.+
T Consensus       329 ~--~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~  378 (495)
T PTZ00314        329 Q--ASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALGADCVMLGSLLAG  378 (495)
T ss_pred             h--HHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence            1  3333   333443 379999999999999999999999999999988654

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=97.79  E-value=0.00035  Score=65.73  Aligned_cols=50  Identities=22%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +..+.++.+ ..++|||+.|||.+.+++..++..|||||++|..++.-+.-
T Consensus       179 ~~L~~~v~~-~~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es  228 (330)
T PF03060_consen  179 FSLLPQVRD-AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEES  228 (330)
T ss_dssp             HHHHHHHHH-H-SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred             eeHHHHHhh-hcCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence            445555554 35799999999999999999999999999999999876653

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=2.3e-05  Score=74.62  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=95.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      +|+|||..+.+..+. |..++..+..+..+.+..+...+.|+ .|.|+-.+..+..    .+ ++.+++.+  .+.+|+|
T Consensus       292 ~~~~~p~~~~~~~~~-~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~----~~-~~~le~~~--~l~i~~r  362 (477)
T KOG2334|consen  292 IQEGCPRGKRIQAAQ-TVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTV----NL-AERLEDLS--ALAIHGR  362 (477)
T ss_pred             hhccCchhhHhhcch-hHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhh----hH-hhhHHhcc--chhhhhc
Confidence            589999999997666 99999999999999999999999999 8999865543332    22 33456666  6788888


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ..+.+-..|++|        +.....+.. ..+++++||++....+-   ..+++.+||.+||.+.|-.+|
T Consensus       363 ~~f~r~~~pa~~--------~~~k~~l~~-~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~  421 (477)
T KOG2334|consen  363 KIFDRPTDPAKW--------DTPKMVLAD-LCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIW  421 (477)
T ss_pred             ccccccCCCcCC--------CCHHHHHHH-hhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhcccc
Confidence            644343334444        333344333 36889999999887774   336777899999999888876

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.71  E-value=0.00021  Score=64.30  Aligned_cols=81  Identities=23%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.|++--=+.. .|.         +.+.+.+.++.+. .++||...|||.|.||+++++..||+-|.+|.+
T Consensus        38 a~~~~~~g~~~l~ivDLd~~-~g~---------~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~  106 (241)
T PRK14024         38 ALAWQRDGAEWIHLVDLDAA-FGR---------GSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTA  106 (241)
T ss_pred             HHHHHHCCCCEEEEEecccc-CCC---------CccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch
Confidence            45567899999988643322 122         1246778888876 489999999999999999999999999999999


Q ss_pred             hhhCCccchhhhH
Q 023442          145 AYQNPWYTLGHVD  157 (282)
Q Consensus       145 al~nP~if~~~~~  157 (282)
                      ++.||.++ .++.
T Consensus       107 ~l~~p~l~-~~i~  118 (241)
T PRK14024        107 ALENPEWC-ARVI  118 (241)
T ss_pred             HhCCHHHH-HHHH
Confidence            99999985 5543

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.64  E-value=0.00037  Score=69.21  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecC----CcccCCCCcCCcCCCCCcc
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSR----KALLNGISPAENRTIPPLK  100 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~R----t~~~~G~~~ad~~~i~~~~  100 (282)
                      .+.+.++.+++.+..++.|+.  |--  .+.+.     ++.+.++|+|.|.|  |+.    |+...|...+        .
T Consensus       269 ~~~~~i~~ir~~~~~~~~V~a--GnV--~t~e~-----a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~--------~  331 (502)
T PRK07107        269 WQKRTLDWIREKYGDSVKVGA--GNV--VDREG-----FRYLAEAGADFVKVGIGGGSICITREQKGIGRG--------Q  331 (502)
T ss_pred             HHHHHHHHHHHhCCCCceEEe--ccc--cCHHH-----HHHHHHcCCCEEEECCCCCcCcccccccCCCcc--------H
Confidence            345666666665543344432  111  12222     22345799999987  433    2323333211        1


Q ss_pred             HHHHHHHHhc-------C-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRD-------F-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~-------~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +..+.++++.       . .++|||+-|||.+.-|+.+++..|||+||+||.+-+
T Consensus       332 ~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag  386 (502)
T PRK07107        332 ATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (502)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence            4444444331       1 138999999999999999999999999999998765

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=97.63  E-value=0.00027  Score=65.16  Aligned_cols=102  Identities=22%  Similarity=0.334  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +|.+--+=++.+++.++.|+-+|==+   .   .++     ++.+.++|++.|+|+  |..+ +.+. ++        ..
T Consensus       207 d~Sl~W~Di~wLr~~T~LPIvvKGil---t---~eD-----A~~Ave~G~~GIIVSNHGgRQ-lD~v-pA--------tI  265 (363)
T KOG0538|consen  207 DPSLSWKDIKWLRSITKLPIVVKGVL---T---GED-----ARKAVEAGVAGIIVSNHGGRQ-LDYV-PA--------TI  265 (363)
T ss_pred             CCCCChhhhHHHHhcCcCCeEEEeec---c---cHH-----HHHHHHhCCceEEEeCCCccc-cCcc-cc--------hH
Confidence            56666677888899999999999322   1   122     123458999999995  4332 2222 22        25


Q ss_pred             HHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          102 EYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.++++.. -+|||+.-|||++..|+.+++..||.+|.|||..+
T Consensus       266 ~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v  311 (363)
T KOG0538|consen  266 EALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV  311 (363)
T ss_pred             HHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence            6666666543 26999999999999999999999999999998654

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=97.62  E-value=0.00033  Score=66.92  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=33.6

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+|||+.|||.|..|+.+++..|||+||+|+.++.-
T Consensus       255 ~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a  290 (369)
T TIGR01304       255 YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA  290 (369)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence            399999999999999999999999999999998764

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=97.62  E-value=0.0021  Score=60.30  Aligned_cols=135  Identities=18%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             hcccCcccc--cccCCHHHHHHHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHH------------------------
Q 023442           11 VAGHGCFGV--SLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDF------------------------   63 (282)
Q Consensus        11 v~~~g~yGs--~Ll~~p~~~~eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~------------------------   63 (282)
                      |.+.|++|.  .-...|+.+.+.++.+++. .+.|+.|-+- ++.......+.++.                        
T Consensus        23 VS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~-~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~  101 (320)
T cd04743          23 VAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGIL-GFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEA  101 (320)
T ss_pred             HHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEe-ccCCCcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHH
Confidence            444454442  1234688888888888885 5788888762 22111000111100                        


Q ss_pred             -------------HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh------cCCCceEEEccCCCC
Q 023442           64 -------------IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR------DFPDLTFTLNGGINT  124 (282)
Q Consensus        64 -------------v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~------~~~~ipVi~nGdI~s  124 (282)
                                   .++.+++.|+|.|++.|...  .|..+ +....  +-|..+.+.+.      ...++|||+.|||.+
T Consensus       102 ~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EA--GGH~G-~~~t~--~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~d  176 (320)
T cd04743         102 IGISTYLHVPSPGLLKQFLENGARKFIFEGREC--GGHVG-PRSSF--VLWESAIDALLAANGPDKAGKIHLLFAGGIHD  176 (320)
T ss_pred             CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcC--cCCCC-CCCch--hhHHHHHHHHHHhhcccccCCccEEEEcCCCC
Confidence                         13456677888888877543  23211 10111  11333322221      113799999999999


Q ss_pred             HHHHHHHHHcCC--------CEEEecHHhhhCCcc
Q 023442          125 VDEVNAALRKGA--------HHVMVGRAAYQNPWY  151 (282)
Q Consensus       125 ~eda~~~l~~g~--------DgVmIGRgal~nP~i  151 (282)
                      ...+..++..|+        +||.+|..++.-+..
T Consensus       177 gr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         177 ERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             HHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence            999999888666        899999888665543

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=97.56  E-value=0.00019  Score=64.15  Aligned_cols=82  Identities=18%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.++|.-=++...|.         +.+++.+.++++.. .+||...|||.|.+|++++++.||+-|.+|.
T Consensus        34 ~a~~~~~~g~~~l~ivDLdaa~~g~---------~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt  103 (229)
T PF00977_consen   34 VAKAFNEQGADELHIVDLDAAKEGR---------GSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGT  103 (229)
T ss_dssp             HHHHHHHTT-SEEEEEEHHHHCCTH---------HHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESH
T ss_pred             HHHHHHHcCCCEEEEEEccCcccCc---------hhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeCh
Confidence            3456689999999987322211221         22477788888764 6999999999999999999999999999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      .++.||.++ .++
T Consensus       104 ~~~~~~~~l-~~~  115 (229)
T PF00977_consen  104 EALEDPELL-EEL  115 (229)
T ss_dssp             HHHHCCHHH-HHH
T ss_pred             HHhhchhHH-HHH
Confidence            999999975 544

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.56  E-value=0.00041  Score=62.55  Aligned_cols=82  Identities=10%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.++|--=+....|.         +.+++.+.++.+..  +||-..|||+|.+|++++++.|||-|.||.
T Consensus        35 ~A~~~~~~ga~~lhivDLd~a~~g~---------~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT  103 (241)
T PRK14114         35 LVEKLIEEGFTLIHVVDLSKAIENS---------VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSS  103 (241)
T ss_pred             HHHHHHHCCCCEEEEEECCCcccCC---------cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECc
Confidence            3556778999999886322111222         23477888888763  799999999999999999999999999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      .++.||.++ +++.
T Consensus       104 ~a~~~p~~l-~~~~  116 (241)
T PRK14114        104 KVLEDPSFL-KFLK  116 (241)
T ss_pred             hhhCCHHHH-HHHH
Confidence            999999864 6653

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.54  E-value=0.00044  Score=66.08  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=34.2

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      ++|||+.|||.+..|+.+++..|||+||+|+.+..-.
T Consensus       256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~  292 (368)
T PRK08649        256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAA  292 (368)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence            5999999999999999999999999999999987643

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.51  E-value=0.0008  Score=58.54  Aligned_cols=76  Identities=17%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.|+|.|.+++-...  +.. ..  ..++..++.+.++++...++||++-||| |.+++.++++.|+|+|.+|++++.+
T Consensus       121 ~~~gaD~v~~~~~~~~--~~~-~~--~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~  194 (212)
T PRK00043        121 LAAGADYVGVGPIFPT--PTK-KD--AKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGA  194 (212)
T ss_pred             hHcCCCEEEECCccCC--CCC-CC--CCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcC
Confidence            4678999988742111  110 00  1122337778777765545999999999 7999999999999999999998766


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      +.
T Consensus       195 ~d  196 (212)
T PRK00043        195 ED  196 (212)
T ss_pred             CC
Confidence            55

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.48  E-value=0.0011  Score=62.36  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=51.5

Q ss_pred             HHHhCCCCEEEEe------cCCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           67 VSSLSPTRHFIIH------SRKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        67 ~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                      -|.++|+|.+-|=      .-|+...|...++        +..+.+.   +++ .++|||+-|||.+.-|+.+++..|+|
T Consensus       167 ~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQ--------ltAV~~~a~~a~~-~gvpiIADGGi~~sGDI~KAlaaGAd  237 (346)
T PRK05096        167 ELILSGADIVKVGIGPGSVCTTRVKTGVGYPQ--------LSAVIECADAAHG-LGGQIVSDGGCTVPGDVAKAFGGGAD  237 (346)
T ss_pred             HHHHcCCCEEEEcccCCccccCccccccChhH--------HHHHHHHHHHHHH-cCCCEEecCCcccccHHHHHHHcCCC
Confidence            3568999999763      1233344543211        4444333   333 47999999999999999999999999


Q ss_pred             EEEecHHhhhC
Q 023442          138 HVMVGRAAYQN  148 (282)
Q Consensus       138 gVmIGRgal~n  148 (282)
                      +||+|.-+-+-
T Consensus       238 ~VMlGsllAGt  248 (346)
T PRK05096        238 FVMLGGMLAGH  248 (346)
T ss_pred             EEEeChhhcCc
Confidence            99999766443

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=97.46  E-value=0.001  Score=57.40  Aligned_cols=77  Identities=19%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|+|.+.+..-..  .+..+ +  ..++..++.+.++++..+++||++-||| |.+++.+++++|+|||.+|++++.
T Consensus       112 a~~~g~dyi~~~~v~~--t~~k~-~--~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~  185 (196)
T TIGR00693       112 AEAEGADYIGFGPIFP--TPTKK-D--PAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ  185 (196)
T ss_pred             HhHcCCCEEEECCccC--CCCCC-C--CCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence            3467999988643211  11100 0  1122347777777765557999999999 699999999999999999999986


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      ...
T Consensus       186 ~~d  188 (196)
T TIGR00693       186 AAD  188 (196)
T ss_pred             CCC
Confidence            554

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=97.45  E-value=0.0014  Score=58.47  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=70.8

Q ss_pred             cccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      |+-.-.+.+.+.+-++++++.+ .|+.+|+=+--..- +-+++ ..+.+++.++|+|+|-...... ..|.+        
T Consensus        98 ~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~~e~i-~~a~~~~~~agadfIKTsTG~~-~~gat--------  165 (221)
T PRK00507         98 GALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-TDEEK-VKACEIAKEAGADFVKTSTGFS-TGGAT--------  165 (221)
T ss_pred             HHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-CHHHH-HHHHHHHHHhCCCEEEcCCCCC-CCCCC--------
Confidence            4444446788888888888765 46778873211111 11233 3356677899999776553221 12221        


Q ss_pred             CccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           98 PLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        98 ~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                         .+.++-+.+.. .+++|.++|||.|.+|+.++++.||+-+-..+|
T Consensus       166 ---~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~  210 (221)
T PRK00507        166 ---VEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG  210 (221)
T ss_pred             ---HHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence               34443333332 369999999999999999999999997765544

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=97.45  E-value=0.001  Score=56.63  Aligned_cols=76  Identities=18%  Similarity=0.078  Sum_probs=54.9

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|+|.|.++.......+.+     .-.+..++.+.++++. .++||++-||| +.+++.++++.|+|+|.+|++++.
T Consensus       111 ~~~~g~d~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~  183 (196)
T cd00564         111 AEELGADYVGFGPVFPTPTKPG-----AGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITG  183 (196)
T ss_pred             HhhcCCCEEEECCccCCCCCCC-----CCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhc
Confidence            3567999999875432111110     0023347777777654 68999999999 579999999999999999999987


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      ++.
T Consensus       184 ~~~  186 (196)
T cd00564         184 ADD  186 (196)
T ss_pred             CCC
Confidence            665

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=97.43  E-value=0.0019  Score=60.14  Aligned_cols=97  Identities=8%  Similarity=0.028  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +++...++++++++.+ +++++++.+.+|+..    +..+ +.+.+++.|+.+|.        .        .+++-+|+
T Consensus       160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~----~A~~-~~~~l~~~~l~~iE--------e--------P~~~~d~~  218 (316)
T cd03319         160 DLEDDIERIRAIREAAPDARLRVDANQGWTPE----EAVE-LLRELAELGVELIE--------Q--------PVPAGDDD  218 (316)
T ss_pred             ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHH----HHHH-HHHHHHhcCCCEEE--------C--------CCCCCCHH
Confidence            3455567777777766 467888887777642    2222 34556677777762        0        11222477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      .++++.+. .++||++++.+.+++++.++++ .++|.|.+-
T Consensus       219 ~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~  258 (316)
T cd03319         219 GLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIK  258 (316)
T ss_pred             HHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence            77777664 6899999999999999999999 889998764

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd02812 PcrB_like PcrB_like proteins

Probab=97.42  E-value=0.00097  Score=59.30  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      .+.+.++++...++|++..|||+|+++++++++.|||+|.+|..+..||..+
T Consensus       163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~  214 (219)
T cd02812         163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAA  214 (219)
T ss_pred             HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHH
Confidence            5677777664228999999999999999999999999999999999999864

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.41  E-value=0.0006  Score=64.61  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec---C---CcccCCCCcCCcCCCCC
Q 023442           26 KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS---R---KALLNGISPAENRTIPP   98 (282)
Q Consensus        26 ~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~---R---t~~~~G~~~ad~~~i~~   98 (282)
                      +.+.+.++.+++.. ++||.+.=   .   .+. +.    ++-|.++|+|.|-|=-   .   |+...|..-      |.
T Consensus       134 ~~~~~~ik~ik~~~~~~~viaGN---V---~T~-e~----a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~------PQ  196 (352)
T PF00478_consen  134 EHVIDMIKKIKKKFPDVPVIAGN---V---VTY-EG----AKDLIDAGADAVKVGIGPGSICTTREVTGVGV------PQ  196 (352)
T ss_dssp             HHHHHHHHHHHHHSTTSEEEEEE---E----SH-HH----HHHHHHTT-SEEEESSSSSTTBHHHHHHSBSC------TH
T ss_pred             HHHHHHHHHHHHhCCCceEEecc---c---CCH-HH----HHHHHHcCCCEEEEeccCCcccccccccccCC------cH
Confidence            44555566666555 35555421   0   122 22    2234579999999841   1   233344321      21


Q ss_pred             ccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           99 LKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        99 ~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                        ...+.++   ++++ .+|||+-|||.+.-|+.++|..|||+||+|+-+-
T Consensus       197 --~tAv~~~a~~a~~~-~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llA  244 (352)
T PF00478_consen  197 --LTAVYECAEAARDY-GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLA  244 (352)
T ss_dssp             --HHHHHHHHHHHHCT-TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTT
T ss_pred             --HHHHHHHHHHhhhc-cCceeecCCcCcccceeeeeeecccceeechhhc
Confidence              4444443   4443 7999999999999999999999999999997653

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=97.35  E-value=0.0029  Score=57.44  Aligned_cols=106  Identities=15%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhhc---CCccEEEEec-CCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           26 KFVGEAMSVIAAN---TNVPVSVKCR-IGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        26 ~~~~eiv~~v~~~---~~ipvsvKiR-~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +.+ +.++++++.   .++|+.|..- .|.... .+.+. ....++.+.+.|+|+|-+..     .+            .
T Consensus       120 ~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~-~~~~~~~a~~~GADyikt~~-----~~------------~  180 (258)
T TIGR01949       120 EQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPEL-VAHAARLGAELGADIVKTPY-----TG------------D  180 (258)
T ss_pred             HHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHH-HHHHHHHHHHHCCCEEeccC-----CC------------C
Confidence            444 556666654   3788777332 011000 11222 22334566789999998641     11            1


Q ss_pred             HHHHHHHHhcCCCceEEEccCCC--CHHHHHHHH----HcCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~--s~eda~~~l----~~g~DgVmIGRgal~nP~i  151 (282)
                      .+.+.++++. ..+||++.|||+  |.+++.+.+    +.|++|+.+||.++..+..
T Consensus       181 ~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp  236 (258)
T TIGR01949       181 IDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP  236 (258)
T ss_pred             HHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence            5666677664 479999999999  666555554    6999999999999988774

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.35  E-value=0.0011  Score=60.11  Aligned_cols=69  Identities=19%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|+++|+|--=     |.         + +++.+.++++. +++||...|||++ ++++++++.|||.|.||.
T Consensus        43 ~A~~~~~~Ga~~lHvVDL-----g~---------~-n~~~i~~i~~~-~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS  105 (253)
T TIGR02129        43 YAKLYKDDGVKGCHVIML-----GP---------N-NDDAAKEALHA-YPGGLQVGGGIND-TNAQEWLDEGASHVIVTS  105 (253)
T ss_pred             HHHHHHHcCCCEEEEEEC-----CC---------C-cHHHHHHHHHh-CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence            355678999999987641     21         2 47888888875 5899999999998 999999999999999999


Q ss_pred             HhhhCC
Q 023442          144 AAYQNP  149 (282)
Q Consensus       144 gal~nP  149 (282)
                      .++.||
T Consensus       106 ~av~~~  111 (253)
T TIGR02129       106 WLFTKG  111 (253)
T ss_pred             HHHhCC
Confidence            999994

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.34  E-value=0.0016  Score=71.09  Aligned_cols=117  Identities=16%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .++-+.++|..+|+.. +.||+||+=.+-.    +.+++.    -+.++|+|.|+|.|...- .|-+|..-.....+.|+
T Consensus       979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~----vg~ia~----gvaka~aD~I~IdG~~GG-TGAap~~~~~~~GlP~e 1049 (1485)
T PRK11750        979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPG----VGTIAT----GVAKAYADLITISGYDGG-TGASPLTSVKYAGSPWE 1049 (1485)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEEccCCC----ccHHHh----ChhhcCCCEEEEeCCCCC-cccccHHHHhhCCccHH
Confidence            4567888899998876 6899999864311    112221    234689999999986532 12222110011122266


Q ss_pred             H-HH----HHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          103 Y-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       103 ~-i~----~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      + +.    .+.+..  -.|.+++.|++.|..|+.+++..|||.|.+||++|--=
T Consensus      1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lial 1103 (1485)
T PRK11750       1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVAL 1103 (1485)
T ss_pred             HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHc
Confidence            4 32    233321  25899999999999999999999999999999997543

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=97.33  E-value=0.00041  Score=61.79  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=47.2

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      +++.+.+.++++...++|++..|||+|.++++++++.|||+|.+|..+..||..+
T Consensus       164 ~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~  218 (223)
T TIGR01768       164 PVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKA  218 (223)
T ss_pred             CcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHH
Confidence            4457777777664337999999999999999999999999999999999998764

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=97.30  E-value=0.0033  Score=57.37  Aligned_cols=107  Identities=17%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhhc---CCccEEEEecC-CC--CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           26 KFVGEAMSVIAAN---TNVPVSVKCRI-GV--DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        26 ~~~~eiv~~v~~~---~~ipvsvKiR~-G~--d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +.+.+.++++++.   .++|+.+=... |.  ....+.+++. ..++++.+.|+|.|-..     +.|            
T Consensus       122 ~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~-~a~~~a~e~GAD~vKt~-----~~~------------  183 (267)
T PRK07226        122 AEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVA-HAARVAAELGADIVKTN-----YTG------------  183 (267)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHH-HHHHHHHHHCCCEEeeC-----CCC------------
Confidence            3345555555544   37787662110 11  1111222322 34566778999999443     111            


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCC--CHHHHHHHH----HcCCCEEEecHHhhhCCcc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~--s~eda~~~l----~~g~DgVmIGRgal~nP~i  151 (282)
                      ..+.+.++++. ..+||++.|||.  |.+++.+++    +.||+|+.+||.++..|..
T Consensus       184 ~~~~l~~~~~~-~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p  240 (267)
T PRK07226        184 DPESFREVVEG-CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDP  240 (267)
T ss_pred             CHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCH
Confidence            14556666653 479999999999  999998887    5899999999999988774

>PLN02591 tryptophan synthase

Probab=97.29  E-value=0.0061  Score=55.29  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=36.9

Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.++++ .+++||+..-||.|++|++++++.|||||.+|.+++
T Consensus       181 i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV  222 (250)
T PLN02591        181 LQELKE-VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV  222 (250)
T ss_pred             HHHHHh-cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence            455544 579999999999999999999999999999999886

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=97.28  E-value=0.0089  Score=51.96  Aligned_cols=107  Identities=16%  Similarity=0.158  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +..+.++++.+++ .++++.+-+- +..  +..++    +. .+.+.|+|.+.++....   +.      ...+..++.+
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~-~~~--t~~~~----~~-~~~~~g~d~v~~~pg~~---~~------~~~~~~~~~i  149 (206)
T TIGR03128        88 DATIKGAVKAAKK-HGKEVQVDLI-NVK--DKVKR----AK-ELKELGADYIGVHTGLD---EQ------AKGQNPFEDL  149 (206)
T ss_pred             HHHHHHHHHHHHH-cCCEEEEEec-CCC--ChHHH----HH-HHHHcCCCEEEEcCCcC---cc------cCCCCCHHHH
Confidence            3456777777766 3788877531 111  11222    11 23467999999975321   11      0111235566


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++.+..+..+|...||| +++.+.++++.|+|+|.+||+++..+.
T Consensus       150 ~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d  194 (206)
T TIGR03128       150 QTILKLVKEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAAD  194 (206)
T ss_pred             HHHHHhcCCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCC
Confidence            666654445666668999 899999999999999999999877655

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.24  E-value=0.0019  Score=58.27  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|+..++|--=.... |.         +.+.+.+.++++.. .+||...|||+|.+|++.+++.|||-|++|..
T Consensus        37 a~~~~~~g~~~lhivDLd~a~-g~---------~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~  105 (243)
T TIGR01919        37 AKWWEQGGAEWIHLVDLDAAF-GG---------GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGGRARVNGGTA  105 (243)
T ss_pred             HHHHHhCCCeEEEEEECCCCC-CC---------cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcCCCEEEECch
Confidence            445678899988876321111 21         22477888888764 69999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.||.++ .++
T Consensus       106 a~~~p~~~-~~~  116 (243)
T TIGR01919       106 ALENPWWA-AAV  116 (243)
T ss_pred             hhCCHHHH-HHH
Confidence            99999975 444

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=97.23  E-value=0.006  Score=54.26  Aligned_cols=69  Identities=22%  Similarity=0.308  Sum_probs=51.3

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC--CCHHH----HHHHHHcCCCE
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVDE----VNAALRKGAHH  138 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI--~s~ed----a~~~l~~g~Dg  138 (282)
                      ++.+.+.|+|.|-+.. +    +            ..+.++++++. ..+||++.||+  .|.+|    +.++++.|++|
T Consensus       149 ~~~a~~~GaD~Ik~~~-~----~------------~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~g  210 (235)
T cd00958         149 ARIGAELGADIVKTKY-T----G------------DAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAG  210 (235)
T ss_pred             HHHHHHHCCCEEEecC-C----C------------CHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence            4556788999888742 1    1            15666677764 47899998887  67766    66677799999


Q ss_pred             EEecHHhhhCCcc
Q 023442          139 VMVGRAAYQNPWY  151 (282)
Q Consensus       139 VmIGRgal~nP~i  151 (282)
                      |.+||.++..|..
T Consensus       211 v~vg~~i~~~~dp  223 (235)
T cd00958         211 VAVGRNIFQRPDP  223 (235)
T ss_pred             EEechhhhcCCCH
Confidence            9999999988763

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.19  E-value=0.0026  Score=57.06  Aligned_cols=81  Identities=11%  Similarity=0.042  Sum_probs=61.5

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+.+.|++.++|--=+... |.         +.+.+.+.++.+.. ..||-..|||+|.+|++++++.|||-|.||.
T Consensus        35 ~a~~~~~~ga~~lhivDLd~a~-~~---------~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt  103 (232)
T PRK13586         35 IASKLYNEGYTRIHVVDLDAAE-GV---------GNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFST  103 (232)
T ss_pred             HHHHHHHCCCCEEEEEECCCcC-CC---------cchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECc
Confidence            3556778999999886322111 21         12367777887732 2499999999999999999999999999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      .++.||.++ +++
T Consensus       104 ~a~~~p~~~-~~~  115 (232)
T PRK13586        104 IVFTNFNLF-HDI  115 (232)
T ss_pred             hhhCCHHHH-HHH
Confidence            999999975 554

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.18  E-value=0.0055  Score=55.38  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=50.2

Q ss_pred             HHHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           64 IYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +++.|+++||..+---+-. +.-+|.        .  +-..++-+++ .+++||+.-+||.+++|+.++++.|||||++.
T Consensus       150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl--------~--n~~~l~~i~e-~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n  218 (267)
T CHL00162        150 LAKHLEDIGCATVMPLGSPIGSGQGL--------Q--NLLNLQIIIE-NAKIPVIIDAGIGTPSEASQAMELGASGVLLN  218 (267)
T ss_pred             HHHHHHHcCCeEEeeccCcccCCCCC--------C--CHHHHHHHHH-cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence            3566677777766543311 111222        1  1233444444 46899999999999999999999999999999


Q ss_pred             HHhhh
Q 023442          143 RAAYQ  147 (282)
Q Consensus       143 Rgal~  147 (282)
                      .|+..
T Consensus       219 SaIak  223 (267)
T CHL00162        219 TAVAQ  223 (267)
T ss_pred             ceeec
Confidence            98863

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=97.15  E-value=0.00095  Score=59.85  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=45.3

Q ss_pred             CccHHHHHHHHhcCCCc-eEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           98 PLKYEYYYALLRDFPDL-TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~i-pVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.+.+.+.++++. .++ ||+..|||+|.+++++++..|||+|.+|..+..||.
T Consensus       169 ~~~~e~I~~v~~~-~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~  221 (232)
T PRK04169        169 PVPPEMVKAVKKA-LDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK  221 (232)
T ss_pred             CCCHHHHHHHHHh-cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence            3456777777664 567 999999999999999999999999999999999987

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=97.15  E-value=0.0035  Score=55.26  Aligned_cols=68  Identities=13%  Similarity=0.220  Sum_probs=51.7

Q ss_pred             HHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        63 ~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ..+..++..|++.|.+-.-+    |.       ..+.+.+.+.++++. .++|++..|||+|+++++++++.|||+|.+|
T Consensus       138 ~~a~aa~~~G~~~i~Le~~s----Ga-------~~~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       138 AYCLAAKYFGMKWVYLEAGS----GA-------SYPVNPETISLVKKA-SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             HHHHHHHHcCCCEEEEEcCC----CC-------CCCCCHHHHHHHHHh-hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            45667778888888874322    21       122346778777764 4899999999999999999998899999987

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=97.14  E-value=0.0042  Score=54.34  Aligned_cols=108  Identities=12%  Similarity=0.106  Sum_probs=67.0

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc-CCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-NGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~-~G~~~ad~~~   95 (282)
                      +|+.+-.+.+.+.+-+.++++.+. ++.+|+-+..... +.++ ...+.+++.++|+|+|-....  +. .|.++     
T Consensus        92 ~g~~~~~~~~~~~~ei~~v~~~~~-g~~lkvI~e~~~l-~~~~-i~~a~ria~e~GaD~IKTsTG--~~~~~at~-----  161 (203)
T cd00959          92 IGALKSGDYEAVYEEIAAVVEACG-GAPLKVILETGLL-TDEE-IIKACEIAIEAGADFIKTSTG--FGPGGATV-----  161 (203)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCC-CHHH-HHHHHHHHHHhCCCEEEcCCC--CCCCCCCH-----
Confidence            354444566777777888887764 4444543322211 2223 344678889999999977622  21 12111     


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                         -....+.+.++  ..+||-++|||.|.+++.++++.|||-+
T Consensus       162 ---~~v~~~~~~~~--~~v~ik~aGGikt~~~~l~~~~~g~~ri  200 (203)
T cd00959         162 ---EDVKLMKEAVG--GRVGVKAAGGIRTLEDALAMIEAGATRI  200 (203)
T ss_pred             ---HHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence               11233444444  3689999999999999999999888743

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.0032  Score=56.11  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=79.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecC-C----CC-------CCCcHHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI-G----VD-------DHDSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~-G----~d-------~~~~~~e~~~~v~~~l   68 (282)
                      |+.|-  .||.    ..++-+.+|+++.++-+..-..+ =+-+-+|-+. |    |.       ....+ +..+. ++.+
T Consensus        93 l~aGA--DKVS----INsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~-d~~~W-a~~~  164 (256)
T COG0107          93 LRAGA--DKVS----INSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL-DAVEW-AKEV  164 (256)
T ss_pred             HHcCC--Ceee----eChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc-CHHHH-HHHH
Confidence            34444  5555    35778999999999998886654 2334444432 2    11       11112 22332 4567


Q ss_pred             HhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442           69 SLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus        69 e~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++.|+-.|-+..  |....+|+   |        .+.++.+.. ..+||||++||.-++++..+.+. +.+|++..+
T Consensus       165 e~~GAGEIlLtsmD~DGtk~Gy---D--------l~l~~~v~~-~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAA  229 (256)
T COG0107         165 EELGAGEILLTSMDRDGTKAGY---D--------LELTRAVRE-AVNIPVIASGGAGKPEHFVEAFTEGKADAALAA  229 (256)
T ss_pred             HHcCCceEEEeeecccccccCc---C--------HHHHHHHHH-hCCCCEEecCCCCcHHHHHHHHHhcCccHHHhh
Confidence            899999998875  43444443   1        555555554 47999999999999999999998 779987655

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=97.10  E-value=0.0061  Score=57.35  Aligned_cols=96  Identities=18%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .++...+.++.+++...+.+.+    |...  +.   .+.+. .+.++|++.|.++...    |.+ ..       -.+.
T Consensus        68 ~~~~~~~~i~~vk~~l~v~~~~----~~~~--~~---~~~~~-~l~eagv~~I~vd~~~----G~~-~~-------~~~~  125 (325)
T cd00381          68 SIEEQAEEVRKVKGRLLVGAAV----GTRE--DD---KERAE-ALVEAGVDVIVIDSAH----GHS-VY-------VIEM  125 (325)
T ss_pred             CHHHHHHHHHHhccCceEEEec----CCCh--hH---HHHHH-HHHhcCCCEEEEECCC----CCc-HH-------HHHH
Confidence            3556666667766443333332    3221  11   22223 3446899999986522    221 00       1456


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.++++..+++||++ |++.|.++++.+++.|+|+|.+|
T Consensus       126 i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381         126 IKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             HHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence            677766666788887 99999999999999999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=97.08  E-value=0.0029  Score=57.63  Aligned_cols=77  Identities=16%  Similarity=0.066  Sum_probs=60.6

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|+++|+|--=.+   |.         +.+++.+.++++  .++||-..|||++ ++++++++.|||-|+||.
T Consensus        48 ~A~~~~~~Ga~~lHvVDLdg---g~---------~~n~~~i~~i~~--~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT  112 (262)
T PLN02446         48 FAEMYKRDGLTGGHVIMLGA---DD---------ASLAAALEALRA--YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTS  112 (262)
T ss_pred             HHHHHHHCCCCEEEEEECCC---CC---------cccHHHHHHHHh--CCCCEEEeCCccH-HHHHHHHHcCCCEEEEch
Confidence            35667899999998863111   21         223777888877  4699999999996 999999999999999999


Q ss_pred             HhhhC----Cccchhhh
Q 023442          144 AAYQN----PWYTLGHV  156 (282)
Q Consensus       144 gal~n----P~if~~~~  156 (282)
                      .|+.|    |.++ .++
T Consensus       113 ~Av~~~~~~p~~v-~~~  128 (262)
T PLN02446        113 YVFRDGQIDLERL-KDL  128 (262)
T ss_pred             HHHhCCCCCHHHH-HHH
Confidence            99999    8864 444

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0035  Score=56.29  Aligned_cols=82  Identities=24%  Similarity=0.331  Sum_probs=63.4

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++...+.|+..|++--=+.-..|         .+.+.+.+.++++. .++||-..|||+|.++++++++.|++-|.+|..
T Consensus        37 a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~-~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~  106 (241)
T COG0106          37 AKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEA-TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTA  106 (241)
T ss_pred             HHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHh-CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecc
Confidence            44567899999987432211112         12346788888876 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhhH
Q 023442          145 AYQNPWYTLGHVD  157 (282)
Q Consensus       145 al~nP~if~~~~~  157 (282)
                      ++.||.++ .++-
T Consensus       107 av~~p~~v-~~~~  118 (241)
T COG0106         107 AVKNPDLV-KELC  118 (241)
T ss_pred             eecCHHHH-HHHH
Confidence            99999975 5543

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.01  E-value=0.0036  Score=55.99  Aligned_cols=80  Identities=20%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.|+|--=++. .|.         +.+.+.+.++.+. ..+||...|||+|.+|+++++..||+-|.||.
T Consensus        40 ~a~~~~~~g~~~l~i~DLd~~-~~~---------~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt  108 (233)
T cd04723          40 VARAYKELGFRGLYIADLDAI-MGR---------GDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT  108 (233)
T ss_pred             HHHHHHHCCCCEEEEEeCccc-cCC---------CccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence            345677889999998743332 122         1236777788775 47999999999999999999999999999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      .++.| .++ .++
T Consensus       109 ~~~~~-~~~-~~~  119 (233)
T cd04723         109 ETLPS-DDD-EDR  119 (233)
T ss_pred             eeccc-hHH-HHH
Confidence            99999 764 444

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=97.01  E-value=0.01  Score=54.00  Aligned_cols=45  Identities=27%  Similarity=0.339  Sum_probs=38.7

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+.++.+ ..+.||+..|||.|++++.++.+.|||||.+|.+++
T Consensus       187 ~~~i~~lr~-~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv  231 (256)
T TIGR00262       187 NELVKRLKA-YSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV  231 (256)
T ss_pred             HHHHHHHHh-hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            566666665 457899999999999999999999999999999874

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=97.01  E-value=0.0016  Score=61.61  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      ++.+++.|+|.|++++-..  .|.....  .-.+.-...+.++++.+ + ||||+.|||.+.+++..++..|||||-+|.
T Consensus       140 A~~~~~~G~d~vI~~g~eA--GGH~g~~--~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT  214 (336)
T COG2070         140 ALKAERAGADAVIAQGAEA--GGHRGGV--DLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQMGT  214 (336)
T ss_pred             HHHHHhCCCCEEEecCCcC--CCcCCCC--CCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHHhhh
Confidence            3456788999999987532  2321110  00111144556666654 6 999999999999999999999999999999


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      .++.-..
T Consensus       215 ~Fl~t~E  221 (336)
T COG2070         215 RFLATKE  221 (336)
T ss_pred             hhhcccc
Confidence            8876543

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=96.99  E-value=0.0035  Score=56.14  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.+.+.++...++|+|..|||+|.+++.++.+.|||.|.+|-.+..||++
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~  220 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDL  220 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-H
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchH
Confidence            34456666667999999999999999999999999999999999999984

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.98  E-value=0.0038  Score=54.07  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+|.+-+++ |..             ....+++.++.+.++++|+++.||| |++++.++++.|+++|.++++++.
T Consensus       122 ~~~Gadyv~~Fp-t~~-------------~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~  185 (187)
T PRK07455        122 WQAGASCVKVFP-VQA-------------VGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP  185 (187)
T ss_pred             HHCCCCEEEECc-CCc-------------ccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence            468999998854 211             1125667777766668999999999 889999999999999999988754

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=96.97  E-value=0.008  Score=59.03  Aligned_cols=113  Identities=17%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC--Ccc
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP--PLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~--~~~  100 (282)
                      .++-+.+.|..+++.. ..+|+||+=.+.    ....+    +--..++++|.|+|.|-..   |.+.+.+..+.  .+-
T Consensus       286 sieDLaqlI~dLk~~~~~~~I~VKlva~~----~v~~i----aagvakA~AD~I~IdG~~G---GTGAsP~~~~~~~GiP  354 (485)
T COG0069         286 SIEDLAQLIKDLKEANPWAKISVKLVAEH----GVGTI----AAGVAKAGADVITIDGADG---GTGASPLTSIDHAGIP  354 (485)
T ss_pred             CHHHHHHHHHHHHhcCCCCeEEEEEeccc----chHHH----HhhhhhccCCEEEEcCCCC---cCCCCcHhHhhcCCch
Confidence            3577888999999875 467999985432    12222    2224579999999987432   22222221111  122


Q ss_pred             HHHH----HH-HHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYY----YA-LLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i----~~-l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      |+.-    .+ +..+.  ..+.|++.|++.|..|+..++..|||.|-+|+++|-
T Consensus       355 ~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~li  408 (485)
T COG0069         355 WELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV  408 (485)
T ss_pred             HHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHH
Confidence            6642    12 22221  257899999999999999999999999999999864

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=96.96  E-value=0.0039  Score=62.44  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=59.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-----------HHHHHHH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-----------DEVNAAL  132 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-----------eda~~~l  132 (282)
                      +++.+.+.|+|.|++--=+....+.  ..    ....++.+.+++++ ..+||...|||+|.           +++++++
T Consensus       272 ~a~~y~~~Gadel~~~Di~~~~~~~--~~----~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l  344 (538)
T PLN02617        272 LAGQYYKDGADEVAFLNITGFRDFP--LG----DLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEVASEYF  344 (538)
T ss_pred             HHHHHHHcCCCEEEEEECCCCcCCc--cc----chhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHHHHHHH
Confidence            3566789999999886322211121  11    11237778888775 58999999999998           6689999


Q ss_pred             HcCCCEEEecHHhhhCC
Q 023442          133 RKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       133 ~~g~DgVmIGRgal~nP  149 (282)
                      ..|||-|.||..|+.||
T Consensus       345 ~~GadkV~i~s~Av~~~  361 (538)
T PLN02617        345 RSGADKISIGSDAVYAA  361 (538)
T ss_pred             HcCCCEEEEChHHHhCh
Confidence            99999999999999987

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.96  E-value=0.013  Score=55.21  Aligned_cols=107  Identities=10%  Similarity=0.072  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++...+.++.+++.+++||.++++.  .+   .++..+ +++.++++|+|+|.+|.-- ....+..   +...+...++.
T Consensus        86 ~d~~~~~i~~~~~~~~~pvi~sI~g--~~---~~e~~~-~a~~~~~agad~ielN~scpp~~~~~~---g~~~~~~~~ei  156 (334)
T PRK07565         86 PEEYLELIRRAKEAVDIPVIASLNG--SS---AGGWVD-YARQIEQAGADALELNIYYLPTDPDIS---GAEVEQRYLDI  156 (334)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEecc--CC---HHHHHH-HHHHHHHcCCCEEEEeCCCCCCCCCCc---cccHHHHHHHH
Confidence            4666777777777778999999964  22   234443 4556788999999997421 0000110   01111112455


Q ss_pred             HHHHHhcCCCceEEEc--cCCCCHHHHHHHHH-cCCCEEEe
Q 023442          104 YYALLRDFPDLTFTLN--GGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       104 i~~l~~~~~~ipVi~n--GdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +.++++ ..++||+..  +++.+..++.+.++ .|+|+|.+
T Consensus       157 l~~v~~-~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~  196 (334)
T PRK07565        157 LRAVKS-AVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL  196 (334)
T ss_pred             HHHHHh-ccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence            556655 358999865  66666777777776 99999966

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=96.94  E-value=0.0066  Score=53.72  Aligned_cols=76  Identities=20%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +++.|+|+|.+-.=..+    +.+.. . ++..++.++.+.+ ...+|+++=||| +++.+.+++++|+|||.+-|+++.
T Consensus       120 A~~~g~DYv~~GpifpT----~tK~~-~-~~~G~~~l~~~~~-~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~  191 (211)
T COG0352         120 AEELGADYVGLGPIFPT----STKPD-A-PPLGLEGLREIRE-LVNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS  191 (211)
T ss_pred             HHhcCCCEEEECCcCCC----CCCCC-C-CccCHHHHHHHHH-hCCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence            45677888877431100    00111 1 4566888876655 456999999998 899999999999999999999998


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      ++..
T Consensus       192 a~d~  195 (211)
T COG0352         192 AADP  195 (211)
T ss_pred             CCCH
Confidence            8775

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.018  Score=50.81  Aligned_cols=108  Identities=22%  Similarity=0.130  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +..-+...++.-++ .++-+.+-+=-.|+    .++    ..+.+++.|++.+.+| +|.....|.++.         |+
T Consensus        91 ~~~TI~~~i~~A~~-~~~~v~iDl~~~~~----~~~----~~~~l~~~gvd~~~~H~g~D~q~~G~~~~---------~~  152 (217)
T COG0269          91 DDATIKKAIKVAKE-YGKEVQIDLIGVWD----PEQ----RAKWLKELGVDQVILHRGRDAQAAGKSWG---------ED  152 (217)
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeecCCC----HHH----HHHHHHHhCCCEEEEEecccHhhcCCCcc---------HH
Confidence            45555666666544 36667776632232    222    2456677999999999 677655675431         45


Q ss_pred             HHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          103 YYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       103 ~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .+..+++.. ....|-..||| +++++..+...|+|-|.+||++-+...
T Consensus       153 ~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~d  200 (217)
T COG0269         153 DLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKD  200 (217)
T ss_pred             HHHHHHHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCCCC
Confidence            555555432 23789899998 899999999999999999999866555

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=96.89  E-value=0.0047  Score=53.40  Aligned_cols=62  Identities=23%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .++|+|.|-+..-..               ...+++..+...++++|+++.||| |++.+.++++.|+|+|.++..+.
T Consensus       114 ~~~Gad~i~~~p~~~---------------~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~  175 (190)
T cd00452         114 LELGADIVKLFPAEA---------------VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             HHCCCCEEEEcCCcc---------------cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence            478999998853211               114566666655667999999999 99999999999999999998887

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.89  E-value=0.0086  Score=54.91  Aligned_cols=94  Identities=22%  Similarity=0.288  Sum_probs=66.6

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      ++.+ |-+-++.|+.+    ++|++.+++||.-++|.|+     +.|     ++.+.++|+|.|.-+.|.+         
T Consensus        43 ~~~~-~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-----~~E-----a~~L~eaGvDiIDaT~r~r---------   98 (283)
T cd04727          43 RAAG-GVARMADPKMI----KEIMDAVSIPVMAKVRIGH-----FVE-----AQILEALGVDMIDESEVLT---------   98 (283)
T ss_pred             hhcC-CeeecCCHHHH----HHHHHhCCCCeEEeeehhH-----HHH-----HHHHHHcCCCEEeccCCCC---------
Confidence            3444 78888898884    5556667999999999875     223     2456789999996444422         


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                           | ..+.+..++.++ ++|++  .|+.|.+++.+..+.|+|.|
T Consensus        99 -----P-~~~~~~~iK~~~-~~l~M--AD~stleEal~a~~~Gad~I  136 (283)
T cd04727          99 -----P-ADEEHHIDKHKF-KVPFV--CGARNLGEALRRISEGAAMI  136 (283)
T ss_pred             -----c-HHHHHHHHHHHc-CCcEE--ccCCCHHHHHHHHHCCCCEE
Confidence                 1 134455666656 66665  48999999999999999955

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=96.84  E-value=0.045  Score=50.07  Aligned_cols=43  Identities=16%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.++. +..++||...+||.|+++++++.+.|||||.+|.+++.
T Consensus       194 i~~ir-~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~  236 (263)
T CHL00200        194 IETIK-KMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ  236 (263)
T ss_pred             HHHHH-HhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence            34444 45789999999999999999999899999999999865

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=96.82  E-value=0.0059  Score=52.29  Aligned_cols=71  Identities=20%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .+.+.|+|++.+.+=...   .+ +.  ..++..|+.+.++++. .++||++-||| |++++.++.++|++||.+-|++
T Consensus       110 ~a~~~g~dYv~~gpvf~T---~s-k~--~~~~~g~~~l~~~~~~-~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  110 EAEELGADYVFLGPVFPT---SS-KP--GAPPLGLDGLREIARA-SPIPVYALGGI-TPENIPELREAGADGVAVISAI  180 (180)
T ss_dssp             HHHHCTTSEEEEETSS-----SS-SS--S-TTCHHHHHHHHHHH-TSSCEEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred             HhhhcCCCEEEECCccCC---CC-Cc--cccccCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence            345789999988752111   10 11  1156678888888775 47999999999 8999999999999999998874

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.81  E-value=0.011  Score=52.32  Aligned_cols=78  Identities=14%  Similarity=0.109  Sum_probs=55.6

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +++.|+|++.+.+=....  +  +.. ..++..|+.+.++.+...++||++=||| +.+++.+++++|++||.+-++++.
T Consensus       118 A~~~gaDYi~lgpvf~T~--t--K~~-~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~  191 (211)
T PRK03512        118 ALAARPSYIALGHVFPTQ--T--KQM-PSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQ  191 (211)
T ss_pred             HhhcCCCEEEECCccCCC--C--CCC-CCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhC
Confidence            346789988886421110  0  100 1234557777777665457999999999 699999999999999999999987


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .+..
T Consensus       192 ~~d~  195 (211)
T PRK03512        192 AADW  195 (211)
T ss_pred             CCCH
Confidence            7664

>PRK04302 triosephosphate isomerase; Provisional

Probab=96.81  E-value=0.0072  Score=53.63  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=38.7

Q ss_pred             HHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          106 ALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       106 ~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.+++ ..++||++-|+|.+++++..+++.|+|||.+|++++.-+.
T Consensus       165 ~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~  210 (223)
T PRK04302        165 EAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKD  210 (223)
T ss_pred             HHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcC
Confidence            33444 2479999999999999999999899999999999998776

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=96.70  E-value=0.0086  Score=56.87  Aligned_cols=101  Identities=19%  Similarity=0.264  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhhcC-------CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           25 PKFVGEAMSVIAANT-------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-------~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      ++.-.+.++.+++..       +..+.|-..+|..+ +.. +.   + +.+.++|+|.|.|..-.    |.+..      
T Consensus        72 ~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~-er---~-~~L~~agvD~ivID~a~----g~s~~------  135 (352)
T PF00478_consen   72 IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDF-ER---A-EALVEAGVDVIVIDSAH----GHSEH------  135 (352)
T ss_dssp             HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHH-HH---H-HHHHHTT-SEEEEE-SS----TTSHH------
T ss_pred             HHHHHHHHhhhccccccccccccccceEEEEecCCH-HHH-HH---H-HHHHHcCCCEEEccccC----ccHHH------
Confidence            455666677776531       23333444444433 122 22   2 23457999999997532    32211      


Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                        -.+.++.+++.++++||| .|+|-|.+.++.+++.|+|+|-+|=|
T Consensus       136 --~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG  179 (352)
T PF00478_consen  136 --VIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG  179 (352)
T ss_dssp             --HHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred             --HHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence              145677888888889997 57799999999999999999999955

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=96.69  E-value=0.014  Score=51.70  Aligned_cols=110  Identities=11%  Similarity=0.117  Sum_probs=69.0

Q ss_pred             ccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      +|..+-.+.+.+.+-++++++.+ ++|+-|=+=.+.-.   -+++. .+.+++.++|+|+|-.+.... ..|.++     
T Consensus        93 ~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~---~~ei~-~a~~ia~eaGADfvKTsTGf~-~~gat~-----  162 (211)
T TIGR00126        93 IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT---DEEIR-KACEICIDAGADFVKTSTGFG-AGGATV-----  162 (211)
T ss_pred             hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC---HHHHH-HHHHHHHHhCCCEEEeCCCCC-CCCCCH-----
Confidence            45555567888888889988877 44544422223211   13444 456788899999997764211 022111     


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                         .....+.+.++  ..++|-+.|||+|.+++.++++.|++-+-.
T Consensus       163 ---~dv~~m~~~v~--~~v~IKaaGGirt~~~a~~~i~aGa~riGt  203 (211)
T TIGR00126       163 ---EDVRLMRNTVG--DTIGVKASGGVRTAEDAIAMIEAGASRIGA  203 (211)
T ss_pred             ---HHHHHHHHHhc--cCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence               11233444444  268999999999999999999988775433

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.61  E-value=0.014  Score=55.33  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.|+|+|.+.+-...  .+  ..+  .++..++.+..+++. .++||++-||| +.+++.+++++|+|||.++++++..
T Consensus       257 ~~~GaDYI~lGPvf~T--~t--Kp~--~~~~Gle~l~~~~~~-~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a  328 (347)
T PRK02615        257 IAEGADYIGVGPVFPT--PT--KPG--KAPAGLEYLKYAAKE-APIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGA  328 (347)
T ss_pred             HHcCCCEEEECCCcCC--CC--CCC--CCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCC
Confidence            4679999888642111  11  011  124458888777764 47999999999 5999999999999999999999875


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      +.
T Consensus       329 ~d  330 (347)
T PRK02615        329 ED  330 (347)
T ss_pred             CC
Confidence            54

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=96.60  E-value=0.037  Score=50.11  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+++++|++.+  ++++.+...-+|+.    ++..+ +.+.+++.|+++|.-                .+++-++
T Consensus       111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iEe----------------P~~~~d~  169 (265)
T cd03315         111 DPARDVAVVAALREAVGDDAELRVDANRGWTP----KQAIR-ALRALEDLGLDYVEQ----------------PLPADDL  169 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCH----HHHHH-HHHHHHhcCCCEEEC----------------CCCcccH
Confidence            3455556677777665  45666666656653    22222 234556666666631                0112235


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+. .++||.+++.+.+++++.++++ ..+|.|++
T Consensus       170 ~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~  209 (265)
T cd03315         170 EGRAALARA-TDTPIMADESAFTPHDAFRELALGAADAVNI  209 (265)
T ss_pred             HHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence            666677654 5899999999999999999998 67998876

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=96.56  E-value=0.0097  Score=53.22  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             HHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           65 YKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      ++.|+++|+..+---+-. +.-+|.          .+-..++.++++. ++|||.-+||-+++|+.++++.|||+|++..
T Consensus       137 akrL~d~GcaavMPlgsPIGSg~Gi----------~n~~~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG~daVLvNT  205 (247)
T PF05690_consen  137 AKRLEDAGCAAVMPLGSPIGSGRGI----------QNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLVNT  205 (247)
T ss_dssp             HHHHHHTT-SEBEEBSSSTTT---S----------STHHHHHHHHHHG-SSSBEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred             HHHHHHCCCCEEEecccccccCcCC----------CCHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence            556677777766544321 111222          1234455566554 8999999999999999999999999999998


Q ss_pred             Hhhh
Q 023442          144 AAYQ  147 (282)
Q Consensus       144 gal~  147 (282)
                      ++-.
T Consensus       206 AiA~  209 (247)
T PF05690_consen  206 AIAK  209 (247)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8743

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=96.54  E-value=0.017  Score=51.47  Aligned_cols=51  Identities=25%  Similarity=0.547  Sum_probs=42.0

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ..+.+.++.+...++||.+-||| |.+.+.++.+.|+|+|.+|+++...+..
T Consensus       161 ~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~  211 (229)
T PLN02334        161 MMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDY  211 (229)
T ss_pred             HHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence            35556666554457899999999 8999999999999999999998877663

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=96.50  E-value=0.0056  Score=52.48  Aligned_cols=95  Identities=21%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      .++.+ |-+-|.||..+.+|.++|    ++||..|.|+|.     +.|     +++|+..|+|+|.=|-=      .+|+
T Consensus        48 iR~~G-GVaRMsDP~~I~eI~~aV----sIPVMAK~RIGH-----fvE-----AqiLealgVD~IDESEV------LTpA  106 (208)
T PF01680_consen   48 IRAAG-GVARMSDPKMIKEIMDAV----SIPVMAKVRIGH-----FVE-----AQILEALGVDYIDESEV------LTPA  106 (208)
T ss_dssp             HHHTT-S---S--HHHHHHHHHH-----SSEEEEEEETT------HHH-----HHHHHHTT-SEEEEETT------S--S
T ss_pred             HHhcC-CccccCCHHHHHHHHHhe----Eeceeeccccce-----eeh-----hhhHHHhCCceeccccc------cccc
Confidence            34455 889999999988877765    899999999984     222     56889999999976631      2345


Q ss_pred             CcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           92 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      |...          .+-+..-++|++..  -++.-.+.+-+..|+..+
T Consensus       107 D~~~----------HI~K~~F~vPFVcG--arnLGEALRRI~EGAaMI  142 (208)
T PF01680_consen  107 DEEN----------HIDKHNFKVPFVCG--ARNLGEALRRIAEGAAMI  142 (208)
T ss_dssp             -SS--------------GGG-SS-EEEE--ESSHHHHHHHHHTT-SEE
T ss_pred             cccc----------cccchhCCCCeEec--CCCHHHHHhhHHhhhhhh
Confidence            4321          11122237887642  357777776666676644

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.47  E-value=0.015  Score=51.16  Aligned_cols=71  Identities=18%  Similarity=0.087  Sum_probs=53.5

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.++++|+++|.+..-.....|.            .+.+..+.+ .+++||+.-|.|.+.++++.+.+.|||+|.++-
T Consensus        36 ~A~~~~~~GA~~l~v~~~~~~~~g~------------~~~~~~i~~-~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~  102 (217)
T cd00331          36 IAKAYEKAGAAAISVLTEPKYFQGS------------LEDLRAVRE-AVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV  102 (217)
T ss_pred             HHHHHHHcCCCEEEEEeCccccCCC------------HHHHHHHHH-hcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence            3556789999999998655443332            344545544 358999988889999999999999999999886


Q ss_pred             Hhhh
Q 023442          144 AAYQ  147 (282)
Q Consensus       144 gal~  147 (282)
                      ..+.
T Consensus       103 ~~~~  106 (217)
T cd00331         103 AALD  106 (217)
T ss_pred             ccCC
Confidence            6654

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=96.46  E-value=0.021  Score=49.68  Aligned_cols=72  Identities=19%  Similarity=0.222  Sum_probs=54.0

Q ss_pred             HhCCCCEEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~-G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal  146 (282)
                      ...|+|++.+...+.... |.+       ++..|+.+.++.   .++|+++.||| |++.+.++++.+ ++||-+.+|+.
T Consensus       117 ~~~~aD~il~dt~~~~~~Gg~g-------~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie  185 (203)
T cd00405         117 YAGEVDAILLDSKSGGGGGGTG-------KTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE  185 (203)
T ss_pred             ccccCCEEEEcCCCCCCCCCCc-------ceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence            357899998876654221 121       234577765553   47899999999 999999999966 99999999998


Q ss_pred             hCCcc
Q 023442          147 QNPWY  151 (282)
Q Consensus       147 ~nP~i  151 (282)
                      ..|-.
T Consensus       186 ~~pg~  190 (203)
T cd00405         186 TSPGI  190 (203)
T ss_pred             CCCCC
Confidence            88764

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.44  E-value=0.049  Score=50.06  Aligned_cols=102  Identities=17%  Similarity=0.304  Sum_probs=64.6

Q ss_pred             ccccCCHH-----HHHHHHHHHhhcCC--ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           19 VSLMLDPK-----FVGEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        19 s~Ll~~p~-----~~~eiv~~v~~~~~--ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      +.|.++-.     -+.+.++.+++...  .++.|=+       ++.++..+     +.++|+|.|-+-.-       +  
T Consensus       154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv-------~tleea~~-----A~~~GaDiI~LDn~-------~--  212 (273)
T PRK05848        154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIEC-------ESLEEAKN-----AMNAGADIVMCDNM-------S--  212 (273)
T ss_pred             hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEe-------CCHHHHHH-----HHHcCCCEEEECCC-------C--
Confidence            44555543     33456666666542  3455533       24555332     23799998865331       1  


Q ss_pred             CcCCCCCccHHHHHHHHhc----CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           92 ENRTIPPLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~----~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                               .+.+.+.++.    .+++.+.++|+| |++.+.++.++|+|.|.+|.....-|++
T Consensus       213 ---------~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~~  266 (273)
T PRK05848        213 ---------VEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATWI  266 (273)
T ss_pred             ---------HHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence                     3444444331    357889999999 9999999999999999999765545554

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=96.40  E-value=0.0096  Score=53.17  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHHHhhcC---CccEEEEecCCCCCC---CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           24 DPKFVGEAMSVIAANT---NVPVSVKCRIGVDDH---DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~---~ipvsvKiR~G~d~~---~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      +.+.+.+-++++++.+   ++||.+=.-+ .+..   +.-.+.+...++++.++|+|.|-......  .|.+.       
T Consensus       106 ~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~-------  175 (236)
T PF01791_consen  106 NEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATP-------  175 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHH-------
T ss_pred             cHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccH-------
Confidence            3455555566665544   6787775322 1110   01123445567888899999998875311  22211       


Q ss_pred             CccHHHHHHHHhcCCCce----EEEccCC------CCHHHHHHHHHcCC--CEEEecHHhhh
Q 023442           98 PLKYEYYYALLRDFPDLT----FTLNGGI------NTVDEVNAALRKGA--HHVMVGRAAYQ  147 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ip----Vi~nGdI------~s~eda~~~l~~g~--DgVmIGRgal~  147 (282)
                       ...+.+.++.+.. .+|    |.++|||      .+.+++.++++.||  -|++.||.++.
T Consensus       176 -~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q  235 (236)
T PF01791_consen  176 -EDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ  235 (236)
T ss_dssp             -HHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred             -HHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence             1134455666542 567    9999999      99999999999999  89999998764

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.38  E-value=0.025  Score=50.35  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=52.8

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++.|+|+|.+-+=.   ...  ..  ..+|...+.+..+++. .++||++-||| |.+++.+++++|+|||.+-++++..
T Consensus       128 ~~~gaDYv~~Gpv~---t~t--K~--~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~  198 (221)
T PRK06512        128 GELRPDYLFFGKLG---ADN--KP--EAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDA  198 (221)
T ss_pred             hhcCCCEEEECCCC---CCC--CC--CCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence            46788888875411   000  00  0133445666555553 58999999999 9999999999999999999999876


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      +..
T Consensus       199 ~dp  201 (221)
T PRK06512        199 HDP  201 (221)
T ss_pred             CCH
Confidence            664

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=96.38  E-value=0.023  Score=51.77  Aligned_cols=78  Identities=13%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC
Q 023442           56 SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG  135 (282)
Q Consensus        56 ~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g  135 (282)
                      ++++.++.   .....++|+|+|+|..   .|.         +..|+.+.++++..+++||+.+||| |++.+.++++. 
T Consensus       158 ~~~e~a~~---~~~~~~aDavivtG~~---TG~---------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~-  220 (257)
T TIGR00259       158 DLESIALD---TVERGLADAVILSGKT---TGT---------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI-  220 (257)
T ss_pred             CHHHHHHH---HHHhcCCCEEEECcCC---CCC---------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh-
Confidence            45554432   2334559999999854   243         2238888777654567999999998 89999999985 


Q ss_pred             CCEEEecHHhhhCCcc
Q 023442          136 AHHVMVGRAAYQNPWY  151 (282)
Q Consensus       136 ~DgVmIGRgal~nP~i  151 (282)
                      ||||.+|.++= +|-.
T Consensus       221 adGviVgS~~K-~~G~  235 (257)
T TIGR00259       221 ADGVIVATTIK-KDGV  235 (257)
T ss_pred             CCEEEECCCcc-cCCc
Confidence            99999998865 5443

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=96.36  E-value=0.017  Score=56.26  Aligned_cols=104  Identities=14%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      +.++++.+++ .+.++.+.+ ++..  +..+.     ++.+.+.|+|.|.+|.-..   +.      ..++..++.++++
T Consensus        96 ~~~~i~~a~~-~G~~~~~g~-~s~~--t~~e~-----~~~a~~~GaD~I~~~pg~~---~~------~~~~~~~~~l~~l  157 (430)
T PRK07028         96 IEDAVRAARK-YGVRLMADL-INVP--DPVKR-----AVELEELGVDYINVHVGID---QQ------MLGKDPLELLKEV  157 (430)
T ss_pred             HHHHHHHHHH-cCCEEEEEe-cCCC--CHHHH-----HHHHHhcCCCEEEEEeccc---hh------hcCCChHHHHHHH
Confidence            4566666665 366665532 1111  11221     2334578999998884211   00      0011225677777


Q ss_pred             HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          108 LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       108 ~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++. .++||++-||| +.+.+.++++.|+|+|.+||+++..+..
T Consensus       158 ~~~-~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~  199 (430)
T PRK07028        158 SEE-VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADV  199 (430)
T ss_pred             Hhh-CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCH
Confidence            654 46999999999 7899999999999999999999877653

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.32  E-value=0.025  Score=49.84  Aligned_cols=65  Identities=22%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+|.+.+.+-               ..+..+++..+++.++ ++|+++.||| |.+.+.++++.|+|+|.++++++.
T Consensus       121 ~~~Gad~vk~Fpa---------------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~  184 (206)
T PRK09140        121 LRAGAQALKLFPA---------------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR  184 (206)
T ss_pred             HHcCCCEEEECCC---------------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence            4678888876331               1123677777776664 6999999999 999999999999999999999976


Q ss_pred             CC
Q 023442          148 NP  149 (282)
Q Consensus       148 nP  149 (282)
                      ..
T Consensus       185 ~~  186 (206)
T PRK09140        185 PG  186 (206)
T ss_pred             cc
Confidence            43

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.31  E-value=0.015  Score=57.84  Aligned_cols=64  Identities=17%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.++|++.|.|..-    .|.+..        .|+.+.++++.++++||++ |+|.|.++++.+++.|||+|.+|
T Consensus       247 ~~l~~ag~d~i~id~a----~G~s~~--------~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg  310 (495)
T PTZ00314        247 AALIEAGVDVLVVDSS----QGNSIY--------QIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRIG  310 (495)
T ss_pred             HHHHHCCCCEEEEecC----CCCchH--------HHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence            4456899999998652    232211        2677888888778888877 99999999999999999999865

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=96.30  E-value=0.017  Score=56.14  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +||||+.|||.|++++..++..|||+|++|...+.-+.-
T Consensus       219 ~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea  257 (418)
T cd04742         219 PIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEA  257 (418)
T ss_pred             CceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccc
Confidence            699999999999999999999999999999999886653

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=96.29  E-value=0.074  Score=49.37  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=55.3

Q ss_pred             hCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC--CCCHHHHHHHHHcCCCEEEecHHh
Q 023442           70 LSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        70 ~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd--I~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      +.|+|+|.+.-.+.  .|.+.       .++++++.+.++.+...++|+++-|+  | +.+++.++++.|++.|-|++.+
T Consensus       164 ~tgvD~LAv~iG~vHG~y~t~-------~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i  235 (293)
T PRK07315        164 ETGIDFLAAGIGNIHGPYPEN-------WEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTEC  235 (293)
T ss_pred             HcCCCEEeeccccccccCCCC-------CCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHH
Confidence            68999998763321  23221       13577998888877643699999999  8 7899999999999999999999


Q ss_pred             hhCC
Q 023442          146 YQNP  149 (282)
Q Consensus       146 l~nP  149 (282)
                      ..+|
T Consensus       236 ~~~~  239 (293)
T PRK07315        236 QIAF  239 (293)
T ss_pred             HHHH
Confidence            8743

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.21  E-value=0.086  Score=48.86  Aligned_cols=40  Identities=20%  Similarity=0.476  Sum_probs=35.4

Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+++|+.+.||| |.+.+.++.++|+|+|.+|.....-|++
T Consensus       241 ~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~~~  280 (288)
T PRK07428        241 NPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITRSPWL  280 (288)
T ss_pred             CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhCCCcc
Confidence            468999999999 7999999999999999999877767764

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.21  E-value=0.045  Score=48.48  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=49.7

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .++|+|.|-+.+...  .|             .++++.+..-++++|+++.||| |.+.+.++++.|+++|.+|..++
T Consensus       126 ~~~Gad~vklFPa~~--~G-------------~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~  187 (213)
T PRK06552        126 LEAGSEIVKLFPGST--LG-------------PSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELN  187 (213)
T ss_pred             HHcCCCEEEECCccc--CC-------------HHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHh
Confidence            479999999865221  11             4566677666778999999999 68999999999999999998885

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=96.20  E-value=0.016  Score=52.78  Aligned_cols=52  Identities=27%  Similarity=0.342  Sum_probs=41.0

Q ss_pred             cHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          100 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       100 ~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.+...++....| ++.+|+-+||.|++|+..+...|+|||.||.++|..|..
T Consensus       195 d~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~  247 (254)
T PF00218_consen  195 DLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDP  247 (254)
T ss_dssp             HTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSH
T ss_pred             ChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence            3444556655443 577899999999999999999999999999999999985

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR02814 pfaD_fam PfaD family protein

Probab=96.17  E-value=0.023  Score=55.55  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .|||++.|||.|++++..++..|||+|.+|..++.-+.-
T Consensus       224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es  262 (444)
T TIGR02814       224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA  262 (444)
T ss_pred             CceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence            689999999999999999999999999999999876553

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=96.16  E-value=0.022  Score=50.65  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEEe
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMV  141 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVmI  141 (282)
                      +++.+.+.|++.|+|--=++. .|.         +.+++.+.+++++   +|+...|||+|.+|+++++.  .+||-|.+
T Consensus        41 ~a~~~~~~g~~~l~ivDLd~~-~~~---------~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~rvvi  107 (221)
T TIGR00734        41 AAKVIEEIGARFIYIADLDRI-VGL---------GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFASRVVV  107 (221)
T ss_pred             HHHHHHHcCCCEEEEEEcccc-cCC---------cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccceEEee
Confidence            345567899999987632221 121         2247778888774   48999999999999999965  36999999


Q ss_pred             cHHhhhCCccchhhh
Q 023442          142 GRAAYQNPWYTLGHV  156 (282)
Q Consensus       142 GRgal~nP~if~~~~  156 (282)
                      |..++.||.++ .++
T Consensus       108 gT~a~~~p~~l-~~~  121 (221)
T TIGR00734       108 ATETLDITELL-REC  121 (221)
T ss_pred             cChhhCCHHHH-HHh
Confidence            99999999964 443

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=96.11  E-value=0.11  Score=47.84  Aligned_cols=75  Identities=13%  Similarity=0.236  Sum_probs=57.4

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc--CCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .++.|+|+|.+.-.+..-..  +    .-|++.++.+.++.+. .++|+++-|  || +.+++.++++.|+++|-+.+++
T Consensus       162 ~~~tg~DyLAvaiG~~hg~~--~----~~~~l~~~~L~~i~~~-~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i  233 (281)
T PRK06806        162 AEETDVDALAVAIGNAHGMY--N----GDPNLRFDRLQEINDV-VHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATAT  233 (281)
T ss_pred             HHhhCCCEEEEccCCCCCCC--C----CCCccCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHH
Confidence            45679999998544321111  1    1256779999888775 589999999  98 8899999999999999999999


Q ss_pred             hhCCc
Q 023442          146 YQNPW  150 (282)
Q Consensus       146 l~nP~  150 (282)
                      ..+|.
T Consensus       234 ~~a~~  238 (281)
T PRK06806        234 FNSVI  238 (281)
T ss_pred             HHHHH
Confidence            98643

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.00  E-value=0.058  Score=50.80  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             cccC-CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC--CEEEEecCCcccCCCCcCCcCCC
Q 023442           20 SLML-DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        20 ~Ll~-~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv--~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .+.+ +++.....++.++.. .  +.|-+-+|... +..+    .+..+ .++|+  |.|.+..-.    |.+.      
T Consensus        65 ~~~k~~~e~~~~~~r~~~~~-~--l~v~~~vg~~~-~~~~----~~~~L-v~ag~~~d~i~iD~a~----gh~~------  125 (326)
T PRK05458         65 IMHRFDPEARIPFIKDMHEQ-G--LIASISVGVKD-DEYD----FVDQL-AAEGLTPEYITIDIAH----GHSD------  125 (326)
T ss_pred             EEecCCHHHHHHHHHhcccc-c--cEEEEEecCCH-HHHH----HHHHH-HhcCCCCCEEEEECCC----CchH------
Confidence            4556 777766666554322 2  23444444432 1222    23333 46754  999994321    1110      


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                        .-.+.+.++++.++++|| ..|+|.|.+++..+.+.|||+|.+|
T Consensus       126 --~~~e~I~~ir~~~p~~~v-i~g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        126 --SVINMIQHIKKHLPETFV-IAGNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             --HHHHHHHHHHhhCCCCeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence              014567777777777775 5678999999999999999999877

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.96  E-value=0.038  Score=47.70  Aligned_cols=71  Identities=23%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             HhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      ...|++.+.++ +++....|         .+...+.+.++.+. +++||+..||| |++++.++++.|+|+|.+|+++..
T Consensus       123 ~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~  191 (202)
T cd04726         123 LKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAITG  191 (202)
T ss_pred             HHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh-cCCCEEEECCc-CHHHHHHHHhcCCCEEEEeehhcC
Confidence            35688887775 33321111         01124556566543 57999999999 599999999999999999999876


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      .+.
T Consensus       192 ~~d  194 (202)
T cd04726         192 AAD  194 (202)
T ss_pred             CCC
Confidence            554

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.94  E-value=0.022  Score=55.89  Aligned_cols=63  Identities=22%  Similarity=0.350  Sum_probs=48.5

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.++|++.|.|..-.    |.+.        --++.++++++.++++||++ |+|.|+++++.+++.|||+|-+|
T Consensus       231 ~L~~aG~d~I~vd~a~----g~~~--------~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg  293 (450)
T TIGR01302       231 ALVKAGVDVIVIDSSH----GHSI--------YVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVG  293 (450)
T ss_pred             HHHHhCCCEEEEECCC----CcHh--------HHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence            3457999999986522    2211        01567788877778999988 99999999999999999999765

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=95.91  E-value=0.031  Score=55.29  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=48.9

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      +.|.++|++.|.+..-.    |.+        ..-.+.++.+++.++++|||+ |.+.|.+.++.+++.|||+|-+|=|
T Consensus       231 ~~Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g  296 (475)
T TIGR01303       231 KALLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVG  296 (475)
T ss_pred             HHHHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCc
Confidence            34567999999985421    111        001456777877788999999 8899999999999999999876633

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=95.90  E-value=0.048  Score=49.37  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=57.8

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.++++|+++|.|-.-..+++|.            ++.+..+.+. .++||+..+-|.++.++.+....|||+|++==
T Consensus        66 ~A~~y~~~GA~aISVlTe~~~F~Gs------------~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~  132 (247)
T PRK13957         66 IAKTYETLGASAISVLTDQSYFGGS------------LEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIV  132 (247)
T ss_pred             HHHHHHHCCCcEEEEEcCCCcCCCC------------HHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEH
Confidence            4556789999999998765555664            6777676654 68999999999999999999999999997765


Q ss_pred             HhhhC
Q 023442          144 AAYQN  148 (282)
Q Consensus       144 gal~n  148 (282)
                      +++..
T Consensus       133 ~~L~~  137 (247)
T PRK13957        133 RILTP  137 (247)
T ss_pred             hhCCH
Confidence            55543

>PRK06801 hypothetical protein; Provisional

Probab=95.75  E-value=0.13  Score=47.58  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC--CCCHHHHHHHHHcCCCEEEe
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG--INTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd--I~s~eda~~~l~~g~DgVmI  141 (282)
                      +..++.|+|.|.++-.|.  .|.+        .++++++.+.++.+. .++|++.-|+  | +.+++.++++.|++.|=|
T Consensus       163 ~f~~~tgvD~LAvaiGt~Hg~y~~--------~~~l~~e~l~~i~~~-~~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv  232 (286)
T PRK06801        163 DFVDRTGIDALAVAIGNAHGKYKG--------EPKLDFARLAAIHQQ-TGLPLVLHGGSGI-SDADFRRAIELGIHKINF  232 (286)
T ss_pred             HHHHHHCcCEEEeccCCCCCCCCC--------CCCCCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcCCcEEEe
Confidence            345678999999964442  2222        245678888888664 5799999999  7 578899999999999999


Q ss_pred             cHHhhh
Q 023442          142 GRAAYQ  147 (282)
Q Consensus       142 GRgal~  147 (282)
                      ++++..
T Consensus       233 ~T~~~~  238 (286)
T PRK06801        233 YTGMSQ  238 (286)
T ss_pred             hhHHHH
Confidence            987643

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=95.74  E-value=0.12  Score=49.23  Aligned_cols=113  Identities=9%  Similarity=0.052  Sum_probs=69.0

Q ss_pred             cccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      +++.+.+|+ +.+-++.+++.. +.||.+=+-..-....+.++    +.+.++..+++++.+|--...... .+...   
T Consensus        98 ~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~----~~~~~~~~~adal~l~l~~~qe~~-~p~g~---  168 (352)
T PRK05437         98 QRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEE----AQRAVEMIEADALQIHLNPLQELV-QPEGD---  168 (352)
T ss_pred             cHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHH----HHHHHHhcCCCcEEEeCccchhhc-CCCCc---
Confidence            445567888 777888888866 78887744321110111222    234556778999999963211000 01100   


Q ss_pred             CCccH----HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKY----EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~----~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                        -.|    +.+.++++. .++||+.  +|.-.|.++++.+.+.|+|+|.++
T Consensus       169 --~~f~~~le~i~~i~~~-~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs  217 (352)
T PRK05437        169 --RDFRGWLDNIAEIVSA-LPVPVIVKEVGFGISKETAKRLADAGVKAIDVA  217 (352)
T ss_pred             --ccHHHHHHHHHHHHHh-hCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence              013    345566554 4789986  666688999998888999999874

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=95.74  E-value=0.19  Score=46.47  Aligned_cols=69  Identities=14%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             HHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc--CCCCHHHHHHHHHcCCCEEEecH
Q 023442           68 SSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .++.|+|.|.+.-.|.  .+.+        .+.++++.+.++.+. .++|+++-|  || +.+++.++++.|+++|-++.
T Consensus       162 ~~~tgvD~Lavs~Gt~hg~~~~--------~~~l~~e~L~~i~~~-~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T  231 (282)
T TIGR01859       162 VKETGVDYLAAAIGTSHGKYKG--------EPGLDFERLKEIKEL-TNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDT  231 (282)
T ss_pred             HHHHCcCEEeeccCccccccCC--------CCccCHHHHHHHHHH-hCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECc
Confidence            3458999999853331  2322        245678888888775 489999999  98 78899999999999999998


Q ss_pred             Hhh
Q 023442          144 AAY  146 (282)
Q Consensus       144 gal  146 (282)
                      .+.
T Consensus       232 ~l~  234 (282)
T TIGR01859       232 DCR  234 (282)
T ss_pred             HHH
Confidence            775

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=95.73  E-value=0.082  Score=49.85  Aligned_cols=98  Identities=12%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      ++++...++++++++.+  ++++.+...-+|+.    ++..+ +.+.+++.|+.++.=-                +++-.
T Consensus       170 ~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~----~~a~~-~~~~l~~~~i~~iEqP----------------~~~~~  228 (357)
T cd03316         170 EDLREDLARVRAVREAVGPDVDLMVDANGRWDL----AEAIR-LARALEEYDLFWFEEP----------------VPPDD  228 (357)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCH----HHHHH-HHHHhCccCCCeEcCC----------------CCccC
Confidence            44777788888888876  56777777666653    23333 3345566666655310                11113


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++...++.+. .++||++.+.+.+++|+.++++ ..||.|.+-
T Consensus       229 ~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k  270 (357)
T cd03316         229 LEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAGAVDIIQPD  270 (357)
T ss_pred             HHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence            5556666654 5899999999999999999998 678887653

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=95.71  E-value=0.16  Score=45.67  Aligned_cols=44  Identities=25%  Similarity=0.358  Sum_probs=36.9

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+.++++ ..++||+..|||.+.+++.++.+. +|+|.+|.++.
T Consensus       176 ~~~i~~lr~-~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv  219 (242)
T cd04724         176 KELIKRIRK-YTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV  219 (242)
T ss_pred             HHHHHHHHh-cCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence            355666655 468999999999999999999988 99999997664

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=95.70  E-value=0.087  Score=47.84  Aligned_cols=130  Identities=23%  Similarity=0.300  Sum_probs=79.1

Q ss_pred             ccCCHHHH---HHHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEEE-E
Q 023442           21 LMLDPKFV---GEAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHFI-I   78 (282)
Q Consensus        21 Ll~~p~~~---~eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i~-V   78 (282)
                      .+.+|.+.   .+-++.+++.+++||-+|==            .|-|--      -+-+++.+ +...+.+.|.+.|+ |
T Consensus        85 VLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~e-l~~~A~~LGm~~LVEV  163 (254)
T COG0134          85 VLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEE-LVDRAHELGMEVLVEV  163 (254)
T ss_pred             EecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHH-HHHHHHHcCCeeEEEE
Confidence            44555433   25678888889999999831            233210      00111222 23345677877654 7


Q ss_pred             ecCCc---cc-CCC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           79 HSRKA---LL-NGI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        79 H~Rt~---~~-~G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      |....   .. -|.  -+-+|+...  .++.+...++....| +.-+|.-.||.|++|+.++...|+||+.||.++|.++
T Consensus       164 h~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~  243 (254)
T COG0134         164 HNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRAD  243 (254)
T ss_pred             CCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCC
Confidence            75421   00 010  001222222  223444556665544 4778999999999999999999999999999999999


Q ss_pred             cc
Q 023442          150 WY  151 (282)
Q Consensus       150 ~i  151 (282)
                      ..
T Consensus       244 ~~  245 (254)
T COG0134         244 DP  245 (254)
T ss_pred             CH
Confidence            96

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=95.68  E-value=0.031  Score=48.27  Aligned_cols=38  Identities=26%  Similarity=0.493  Sum_probs=34.2

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++||++-|||+. +++.++++.|+|+|.+|++++..+..
T Consensus       166 ~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~  203 (211)
T cd00429         166 NLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDY  203 (211)
T ss_pred             CeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCH
Confidence            589999999975 99999999999999999999887764

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.66  E-value=0.1  Score=49.23  Aligned_cols=100  Identities=20%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHH-hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSS-LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le-~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++.-.+.++.++.....-++|  .+|..+ +.+    +.+..+++ .+|+|.|+|..-    .|.+..        -.+.
T Consensus        81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~----er~~~L~~~~~g~D~iviD~A----hGhs~~--------~i~~  141 (346)
T PRK05096         81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADF----EKTKQILALSPALNFICIDVA----NGYSEH--------FVQF  141 (346)
T ss_pred             HHHHHHHHHhccccccceEEE--EecCCH-HHH----HHHHHHHhcCCCCCEEEEECC----CCcHHH--------HHHH
Confidence            555566666666443222333  334433 222    23344444 379999999642    232210        1456


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.+|+++| ..|+|-|++.++.++..|||+|=+|=|
T Consensus       142 ik~ik~~~P~~~v-IaGNV~T~e~a~~Li~aGAD~vKVGIG  181 (346)
T PRK05096        142 VAKAREAWPDKTI-CAGNVVTGEMVEELILSGADIVKVGIG  181 (346)
T ss_pred             HHHHHHhCCCCcE-EEecccCHHHHHHHHHcCCCEEEEccc
Confidence            7788887888875 569999999999999999999877654

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=95.66  E-value=0.056  Score=48.33  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=37.6

Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh--hhCCcc
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA--YQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga--l~nP~i  151 (282)
                      +.-++++. ++|||.--||-++.|+...++-|||+|++-.+.  -.||-.
T Consensus       174 l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~  222 (262)
T COG2022         174 LEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVA  222 (262)
T ss_pred             HHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHH
Confidence            33444444 999999999999999999999999999998776  344543

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=95.64  E-value=0.12  Score=48.75  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++.-.+.++.+......-++|  .+|..+ +.+    +.+..+++. .|+|.|+|..-    .|.+..        -.+.
T Consensus        80 ~e~~~~~v~~~~~~~~~~~~v--svG~~~-~d~----er~~~L~~a~~~~d~iviD~A----hGhs~~--------~i~~  140 (343)
T TIGR01305        80 VDEWKAFATNSSPDCLQNVAV--SSGSSD-NDL----EKMTSILEAVPQLKFICLDVA----NGYSEH--------FVEF  140 (343)
T ss_pred             HHHHHHHHHhhcccccceEEE--EeccCH-HHH----HHHHHHHhcCCCCCEEEEECC----CCcHHH--------HHHH
Confidence            555555555544433323333  334333 122    223334432 26999999642    232210        1455


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++.+++.+|+. .+.-|+|-|+++++.+++.|||+|-+|
T Consensus       141 ik~ir~~~p~~-~viaGNV~T~e~a~~Li~aGAD~ikVg  178 (343)
T TIGR01305       141 VKLVREAFPEH-TIMAGNVVTGEMVEELILSGADIVKVG  178 (343)
T ss_pred             HHHHHhhCCCC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence            66776666654 567799999999999999999999887

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=95.61  E-value=0.088  Score=49.73  Aligned_cols=121  Identities=19%  Similarity=0.272  Sum_probs=75.2

Q ss_pred             HHHHHHhhc-CCccEEEEe-----------c-CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCcc---cC
Q 023442           30 EAMSVIAAN-TNVPVSVKC-----------R-IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL---LN   86 (282)
Q Consensus        30 eiv~~v~~~-~~ipvsvKi-----------R-~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~---~~   86 (282)
                      +-++.++++ +++||-.|=           | .|-|--      -+-.++. .+.+++.+.|.+.| .||.....   ..
T Consensus       170 e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~-~l~~~A~~LGme~LVEVH~~~ElerAl~  248 (338)
T PLN02460        170 ENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIK-YMLKICKSLGMAALIEVHDEREMDRVLG  248 (338)
T ss_pred             HHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHh
Confidence            446778887 899999883           1 233320      0111222 23456678888765 58854310   11


Q ss_pred             --CC--CcCCcCCCC--CccHHHHHHHHh-----cC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           87 --GI--SPAENRTIP--PLKYEYYYALLR-----DF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        87 --G~--~~ad~~~i~--~~~~~~i~~l~~-----~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        |.  -+-+|+...  .++.+...++..     ..  .++-+|+-+||.|++|+..+.+.|+|+|.||.++|..|..
T Consensus       249 ~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp  326 (338)
T PLN02460        249 IEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDP  326 (338)
T ss_pred             cCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCH
Confidence              21  012333222  233444555554     22  2466899999999999999999999999999999999985

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=95.60  E-value=0.11  Score=47.36  Aligned_cols=116  Identities=11%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEec--CCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR--IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR--~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      +|..+-.+.+.+.+-+++|++.++-++.+|+=  .+.-..+  +++. .+.+++.++|+|+|--+.... ..|.++.   
T Consensus       106 ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~i~-~a~~~a~~aGADFVKTSTGf~-~~gAt~e---  178 (257)
T PRK05283        106 YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--ALIR-KASEIAIKAGADFIKTSTGKV-PVNATLE---  178 (257)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HHHH-HHHHHHHHhCCCEEEcCCCCC-CCCCCHH---
Confidence            56666678999999999999876423555643  2322211  1232 345677899999986653211 0121111   


Q ss_pred             CCCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           95 TIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                           ....+.+.+++   ..++.|=++|||+|.+++.++++.|       +-.|++-|+
T Consensus       179 -----dv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag-------~~~lg~~~~  226 (257)
T PRK05283        179 -----AARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALA-------DEILGADWA  226 (257)
T ss_pred             -----HHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHH-------HHHhChhhc
Confidence                 12233344332   1357888999999999999999843       445555554

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=95.55  E-value=0.045  Score=47.40  Aligned_cols=38  Identities=21%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++||...||| |++.+.+++++|+|+|.+|++++..+..
T Consensus       165 ~~~i~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~  202 (210)
T TIGR01163       165 SILIEVDGGV-NDDNARELAEAGADILVAGSAIFGADDY  202 (210)
T ss_pred             CceEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence            4799999999 5799999999999999999999887764

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK08999 hypothetical protein; Provisional

Probab=95.50  E-value=0.061  Score=49.81  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      +.+.|+|++.+.+=...  .+ ..+   .+++.++.+.++++. .++||++=||| |.+++.+++++|+|||.+-+++
T Consensus       242 a~~~~~dyi~~gpvf~t--~t-k~~---~~~~g~~~~~~~~~~-~~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~~  311 (312)
T PRK08999        242 AQRLGVDFAVLSPVQPT--AS-HPG---AAPLGWEGFAALIAG-VPLPVYALGGL-GPGDLEEAREHGAQGIAGIRGL  311 (312)
T ss_pred             HHhcCCCEEEECCCcCC--CC-CCC---CCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHhCCCEEEEEEEe
Confidence            34678999888652110  00 011   134557777777664 58999999999 9999999999999999876654

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=95.30  E-value=0.11  Score=50.60  Aligned_cols=78  Identities=10%  Similarity=-0.037  Sum_probs=53.9

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC--------CCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~--------~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      +.+.|+|+|.+-+=..+  -.  +. ...+|..|+.+.++++..        .++||++=||| +.+++.+++++|++||
T Consensus       316 A~~~gaDYI~lGPIFpT--~T--K~-~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GV  389 (437)
T PRK12290        316 IVQIQPSYIALGHIFPT--TT--KQ-MPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSL  389 (437)
T ss_pred             HhhcCCCEEEECCccCC--CC--CC-CCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence            34678898887531110  00  00 012455677775554432        37999999999 9999999999999999


Q ss_pred             EecHHhhhCCcc
Q 023442          140 MVGRAAYQNPWY  151 (282)
Q Consensus       140 mIGRgal~nP~i  151 (282)
                      .+-|+++..+..
T Consensus       390 AVVSAI~~A~DP  401 (437)
T PRK12290        390 AVVRAITLAEDP  401 (437)
T ss_pred             EEehHhhcCCCH
Confidence            999999876663

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=95.23  E-value=0.068  Score=53.00  Aligned_cols=64  Identities=19%  Similarity=0.334  Sum_probs=46.6

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.++|++.|++-.-.    |.+ ..       -++.+..++++++++||++ |+|.|.+++..+++.|||+|-+|
T Consensus       234 ~~L~~agvdvivvD~a~----g~~-~~-------vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg  297 (486)
T PRK05567        234 EALVEAGVDVLVVDTAH----GHS-EG-------VLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVKVG  297 (486)
T ss_pred             HHHHHhCCCEEEEECCC----Ccc-hh-------HHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence            34567999988874311    110 00       1455667776667899888 99999999999999999999775

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=95.18  E-value=0.76  Score=42.04  Aligned_cols=119  Identities=19%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHhhc-CCccEEEEecC------------------CCCC----CCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           24 DPKFVGEAMSVIAAN-TNVPVSVKCRI------------------GVDD----HDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~-~~ipvsvKiR~------------------G~d~----~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      .++.+.++++.+++. .++|+.+=+-.                  |.|.    +-..++ ...+.+.+++.|++.|.+-+
T Consensus        77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee-~~~~~~~~~~~gi~~I~lva  155 (265)
T COG0159          77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEE-SDELLKAAEKHGIDPIFLVA  155 (265)
T ss_pred             CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHHHHHcCCcEEEEeC
Confidence            467788999999954 68888764321                  1111    001211 12233445566666666532


Q ss_pred             CCc-------------------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           81 RKA-------------------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        81 Rt~-------------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      -|.                   ...|..++....... --+.+.++ +++.++||...=||.|+++++++.+. ||||.+
T Consensus       156 Ptt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~v-r~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIV  232 (265)
T COG0159         156 PTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSAD-VKELVKRV-RKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIV  232 (265)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchh-HHHHHHHH-HHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEE
Confidence            220                   112433333221111 12334444 44569999999999999999999998 999999


Q ss_pred             cHHhh
Q 023442          142 GRAAY  146 (282)
Q Consensus       142 GRgal  146 (282)
                      |.++.
T Consensus       233 GSAiV  237 (265)
T COG0159         233 GSAIV  237 (265)
T ss_pred             cHHHH
Confidence            98864

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=95.17  E-value=0.15  Score=46.16  Aligned_cols=117  Identities=14%  Similarity=0.187  Sum_probs=71.8

Q ss_pred             HHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc-------
Q 023442           30 EAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA-------   83 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~-------   83 (282)
                      +-++.+++.+++||-.|==            .|-|--      -+-+++.+ +...+.+.|.+.| .||....       
T Consensus        92 ~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~-l~~~a~~lGle~LVEVh~~~El~~a~~~  170 (247)
T PRK13957         92 EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKS-FLKHASSLGMDVLVEVHTEDEAKLALDC  170 (247)
T ss_pred             HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHH-HHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence            4466677778899988721            122210      01112322 3345677888766 5775321       


Q ss_pred             --ccCCCCcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           84 --LLNGISPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        84 --~~~G~~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        ..=|.   +++...  .++.+...++....| +..+|+-+||.|++|+.++... +|||.||.++|.++..
T Consensus       171 ga~iiGI---NnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~  239 (247)
T PRK13957        171 GAEIIGI---NTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDI  239 (247)
T ss_pred             CCCEEEE---eCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCH
Confidence              01111   222111  223445556655444 5678999999999999998876 9999999999999985

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.14  E-value=0.076  Score=52.60  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      +.+.++|++.|.+-.-.    |.+.        .-++.+.++++++|+++|+ .|+|.|.+.++.+++.|||+|-+|=|
T Consensus       233 ~~Lv~aGvd~i~~D~a~----~~~~--------~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v~vgig  298 (479)
T PRK07807        233 RALLEAGVDVLVVDTAH----GHQE--------KMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIVKVGVG  298 (479)
T ss_pred             HHHHHhCCCEEEEeccC----CccH--------HHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEEEECcc
Confidence            34567899999986532    1110        0167788888888888775 58999999999999999999886644

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=95.09  E-value=0.12  Score=48.44  Aligned_cols=46  Identities=13%  Similarity=0.246  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      -+.+..+++. +++||+.-+||.+++|+.++++.|||||.+..|...
T Consensus       238 p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~  283 (326)
T PRK11840        238 PYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE  283 (326)
T ss_pred             HHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence            4566666664 689999999999999999999999999999988853

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=95.09  E-value=0.38  Score=45.34  Aligned_cols=112  Identities=11%  Similarity=0.041  Sum_probs=67.6

Q ss_pred             cccccCCHHHHHHHHHHHhh-cCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-c---ccCCCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-A---LLNGISPAE   92 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~-~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~---~~~G~~~ad   92 (282)
                      +++.+.+|+...+. +.+++ ..++|+.+-+-..-......++    +.+..+..+++++.+|--. +   ...|.  .+
T Consensus        91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~----~~~~i~~i~adal~i~ln~~q~~~~p~g~--~~  163 (333)
T TIGR02151        91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEE----AQEAIDMIEADALAIHLNVLQELVQPEGD--RN  163 (333)
T ss_pred             chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHH----HHHHHHHhcCCCEEEcCcccccccCCCCC--cC
Confidence            44456689877666 77877 5689998754321110011222    2334456678999999632 1   11111  11


Q ss_pred             cCCCCCccH-HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442           93 NRTIPPLKY-EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        93 ~~~i~~~~~-~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .     -.| +.+..+++. .++||+.  +|.-.+.++++.+.+.|+|+|-++
T Consensus       164 f-----~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs  210 (333)
T TIGR02151       164 F-----KGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAIDVA  210 (333)
T ss_pred             H-----HHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            0     012 456666664 4789975  566679999988888999999886

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.09  E-value=0.067  Score=53.35  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.++|+|.|.+-.-    .|.+..        -|+.+.++++.+++++| .-|+|.|.++++.+++.|||+|.+|
T Consensus       255 ~l~~ag~d~i~iD~~----~g~~~~--------~~~~i~~ik~~~p~~~v-i~g~v~t~e~a~~a~~aGaD~i~vg  317 (505)
T PLN02274        255 HLVKAGVDVVVLDSS----QGDSIY--------QLEMIKYIKKTYPELDV-IGGNVVTMYQAQNLIQAGVDGLRVG  317 (505)
T ss_pred             HHHHcCCCEEEEeCC----CCCcHH--------HHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence            456799999999762    233211        27888888887777666 4589999999999999999999775

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=95.07  E-value=0.18  Score=47.35  Aligned_cols=106  Identities=17%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             cCcccccccC-CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC--CCEEEEecCCcccCCCCc
Q 023442           14 HGCFGVSLML-DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGISP   90 (282)
Q Consensus        14 ~g~yGs~Ll~-~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G--v~~i~VH~Rt~~~~G~~~   90 (282)
                      .|.+ +.+.+ +++...+.++.++.. .++  +-+-+|..+. ..    +.+..+ .++|  +|.|.+..-    .|.+.
T Consensus        57 ~G~~-~i~hK~~~E~~~sfvrk~k~~-~L~--v~~SvG~t~e-~~----~r~~~l-v~a~~~~d~i~~D~a----hg~s~  122 (321)
T TIGR01306        57 NGYF-YIMHRFDEESRIPFIKDMQER-GLF--ASISVGVKAC-EY----EFVTQL-AEEALTPEYITIDIA----HGHSN  122 (321)
T ss_pred             cCCE-EEEecCCHHHHHHHHHhcccc-ccE--EEEEcCCCHH-HH----HHHHHH-HhcCCCCCEEEEeCc----cCchH
Confidence            3443 34555 777666666665432 333  3444555442 12    223333 4567  698888542    22211


Q ss_pred             CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           91 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        91 ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .        -++.++.+++.+ ..|++..|.|.|.++++.+++.|||+|.+|
T Consensus       123 ~--------~~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306       123 S--------VINMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             H--------HHHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence            0        156677777655 567888999999999999999999999877

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=95.06  E-value=0.1  Score=54.48  Aligned_cols=53  Identities=11%  Similarity=0.033  Sum_probs=44.7

Q ss_pred             CccHHHHHHHHhcCC--CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           98 PLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~--~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++.|+.+.++++...  ++||++=||| +++++.+++++|++||.+-++++..++.
T Consensus       149 ~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a~d~  203 (755)
T PRK09517        149 ALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAAANP  203 (755)
T ss_pred             CCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCCCCH
Confidence            456888877766432  3999999999 9999999999999999999999977764

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=95.05  E-value=0.34  Score=44.38  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +++||.+.||| |++.+.++.++|+|+|.+|.-...-|++
T Consensus       226 ~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~~~~  264 (269)
T cd01568         226 PRVLLEASGGI-TLENIRAYAETGVDVISTGALTHSAPAL  264 (269)
T ss_pred             CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHHcCCCcc
Confidence            57899999999 8999999999999999998555555453

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=94.99  E-value=0.22  Score=45.29  Aligned_cols=70  Identities=13%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      ..++..++|+|+|+|..   .|..         ...+.+.++++.. ++||+.++|+ |++-+.++++ -|||+.+|..+
T Consensus       166 ~a~~~~~aDaviVtG~~---TG~~---------~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~-~ADG~IVGS~~  230 (254)
T PF03437_consen  166 DAVERGGADAVIVTGKA---TGEP---------PDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLS-YADGAIVGSYF  230 (254)
T ss_pred             HHHHhcCCCEEEECCcc---cCCC---------CCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHH-hCCEEEEeeee
Confidence            34467899999999854   2331         1256666776654 4999999998 8999999987 48999999876


Q ss_pred             hhCCc
Q 023442          146 YQNPW  150 (282)
Q Consensus       146 l~nP~  150 (282)
                      -.|=.
T Consensus       231 K~~G~  235 (254)
T PF03437_consen  231 KKDGK  235 (254)
T ss_pred             eeCCE
Confidence            54443

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.99  E-value=0.28  Score=47.34  Aligned_cols=65  Identities=22%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++|++.|++..-    +|.|-..        .+.++-+++.+|++.||+ |++.|.++++.++..|+||+=||-|
T Consensus       258 ll~~aGvdvviLDSS----qGnS~~q--------iemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrVGMG  322 (503)
T KOG2550|consen  258 LLVQAGVDVVILDSS----QGNSIYQ--------LEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRVGMG  322 (503)
T ss_pred             HhhhcCCcEEEEecC----CCcchhH--------HHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEeccc
Confidence            566899999999763    3443211        556666777789998865 8889999999999999999887755

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=94.90  E-value=0.18  Score=44.98  Aligned_cols=106  Identities=12%  Similarity=0.128  Sum_probs=67.3

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      +|...-.+++.+.+-|++|++++.-++.+|+=+  +.-.   -++. ....+++.++|+|+|--+.... ..|-+.    
T Consensus       100 ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt---~ee~-~~A~~i~~~aGAdFVKTSTGf~-~~gAT~----  170 (228)
T COG0274         100 IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLT---DEEK-RKACEIAIEAGADFVKTSTGFS-AGGATV----  170 (228)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccC---HHHH-HHHHHHHHHhCCCEEEcCCCCC-CCCCCH----
Confidence            355556689999999999999986446667543  3222   1233 2345677899999986553211 112111    


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                        .  +...+.+.+.  ..+.|=++|||+|.+|+..+++.|+.
T Consensus       171 --e--dv~lM~~~vg--~~vgvKaSGGIrt~eda~~~i~aga~  207 (228)
T COG0274         171 --E--DVKLMKETVG--GRVGVKASGGIRTAEDAKAMIEAGAT  207 (228)
T ss_pred             --H--HHHHHHHHhc--cCceeeccCCcCCHHHHHHHHHHhHH
Confidence              0  1222333332  35788899999999999999997733

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.87  E-value=0.18  Score=45.90  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHh-hcCCccEEEEec------CCCC------------C----CCcHHHHHHHHHHHHHhCCCCEEE-Ee
Q 023442           24 DPKFVGEAMSVIA-ANTNVPVSVKCR------IGVD------------D----HDSYNQLCDFIYKVSSLSPTRHFI-IH   79 (282)
Q Consensus        24 ~p~~~~eiv~~v~-~~~~ipvsvKiR------~G~d------------~----~~~~~e~~~~v~~~le~~Gv~~i~-VH   79 (282)
                      +.+.+.+++++++ +..++|+-+=.-      -|.+            .    +-..++.-+ +...+++.|.+.|. +.
T Consensus        72 ~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~-~~~~~~~~gl~~I~lva  150 (258)
T PRK13111         72 TLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEE-LRAAAKKHGLDLIFLVA  150 (258)
T ss_pred             CHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHH-HHHHHHHcCCcEEEEeC
Confidence            4556778888888 446778643221      1211            0    112444333 34566788988887 33


Q ss_pred             cCCc--------------c----cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           80 SRKA--------------L----LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        80 ~Rt~--------------~----~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +.|.              .    ..|.++... ..++.-.+.+.++++ ..++||+..|||.|++++.++++ .||||.+
T Consensus       151 p~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~-~~~~~~~~~i~~vk~-~~~~pv~vGfGI~~~e~v~~~~~-~ADGviV  227 (258)
T PRK13111        151 PTTTDERLKKIASHASGFVYYVSRAGVTGARS-ADAADLAELVARLKA-HTDLPVAVGFGISTPEQAAAIAA-VADGVIV  227 (258)
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc-CCCccHHHHHHHHHh-cCCCcEEEEcccCCHHHHHHHHH-hCCEEEE
Confidence            3220              0    123222211 112222345656655 56899999999999999999998 4999999


Q ss_pred             cHHhh
Q 023442          142 GRAAY  146 (282)
Q Consensus       142 GRgal  146 (282)
                      |.+++
T Consensus       228 GSaiv  232 (258)
T PRK13111        228 GSALV  232 (258)
T ss_pred             cHHHH
Confidence            98876

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.76  E-value=0.11  Score=50.32  Aligned_cols=64  Identities=22%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+.++|+|.|++-.-.    |.+.        .-++.+.++.+.+|+++| .-|+|.|+++++.+++.|+|+|.+|=
T Consensus       160 ~lv~aGvDvI~iD~a~----g~~~--------~~~~~v~~ik~~~p~~~v-i~g~V~T~e~a~~l~~aGaD~I~vG~  223 (404)
T PRK06843        160 ELVKAHVDILVIDSAH----GHST--------RIIELVKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVGI  223 (404)
T ss_pred             HHHhcCCCEEEEECCC----CCCh--------hHHHHHHHHHhhCCCCcE-EEEecCCHHHHHHHHHcCCCEEEECC
Confidence            4557999999986522    2110        014667777777778774 56899999999999999999999873

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=94.75  E-value=0.32  Score=42.58  Aligned_cols=62  Identities=27%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +++.+.+.|+..+.|.-||..               ..+.+.++.++++++ ++|.|-|.|.++++++++.|+++++-
T Consensus        25 ~~~al~~gGi~~iEiT~~t~~---------------a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivS   86 (196)
T PF01081_consen   25 IAEALIEGGIRAIEITLRTPN---------------ALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVS   86 (196)
T ss_dssp             HHHHHHHTT--EEEEETTSTT---------------HHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred             HHHHHHHCCCCEEEEecCCcc---------------HHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEEC
Confidence            445677899999999998731               156777777777775 67999999999999999999998875

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=94.61  E-value=0.22  Score=48.08  Aligned_cols=69  Identities=20%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             hCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           70 LSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        70 ~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ..++|.+.+|. ....  +.         +..|+.+.++.+...+++|...|||. .+++.++++.|+|.+.+||++...
T Consensus       297 ~~~vD~Vllht~vdp~--~~---------~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~a  364 (391)
T PRK13307        297 KVKPDVVELHRGIDEE--GT---------EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAGADILVVGRAITKS  364 (391)
T ss_pred             hCCCCEEEEccccCCC--cc---------cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhCC
Confidence            46788888884 3221  11         11266666665544578999999996 999999999999999999998766


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      +.
T Consensus       365 ~D  366 (391)
T PRK13307        365 KD  366 (391)
T ss_pred             CC
Confidence            55

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=94.61  E-value=0.64  Score=42.52  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.++|+|.|-+-.-.                  .+.+++.++.. ..+||++.||| |.+.+.++.++|+|+|.+|.-..
T Consensus       194 A~~~gaDyI~ld~~~------------------~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait~  254 (265)
T TIGR00078       194 AAEAGADIIMLDNMK------------------PEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISSGALTH  254 (265)
T ss_pred             HHHcCCCEEEECCCC------------------HHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHHc
Confidence            357999998774311                  23344444322 24899999999 79999999999999999964333


Q ss_pred             hCCc
Q 023442          147 QNPW  150 (282)
Q Consensus       147 ~nP~  150 (282)
                      .-|+
T Consensus       255 sa~~  258 (265)
T TIGR00078       255 SVPA  258 (265)
T ss_pred             CCCc
Confidence            2454

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=94.57  E-value=0.51  Score=41.98  Aligned_cols=37  Identities=27%  Similarity=0.602  Sum_probs=32.7

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++||.+-|||+ .+.+.++.+.|+|++.+|+++...+.
T Consensus       167 ~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d  203 (220)
T PRK08883        167 DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD  203 (220)
T ss_pred             CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence            58999999996 99999999999999999999876554

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=94.53  E-value=0.26  Score=43.37  Aligned_cols=69  Identities=16%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+.+.|+..+.|.-|+..               .++.+.+++++++++ ++|.|-|.|.++++++++.|+++++-= 
T Consensus        25 ~~~al~~~Gi~~iEit~~t~~---------------a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a~~aGA~FivsP-   87 (204)
T TIGR01182        25 LAKALIEGGLRVLEVTLRTPV---------------ALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQAVDAGAQFIVSP-   87 (204)
T ss_pred             HHHHHHHcCCCEEEEeCCCcc---------------HHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCCEEECC-
Confidence            456777999999999987631               156777887777764 579999999999999999999988532 


Q ss_pred             HhhhCCcc
Q 023442          144 AAYQNPWY  151 (282)
Q Consensus       144 gal~nP~i  151 (282)
                      ++  ||.+
T Consensus        88 ~~--~~~v   93 (204)
T TIGR01182        88 GL--TPEL   93 (204)
T ss_pred             CC--CHHH
Confidence            32  5555

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=94.52  E-value=0.21  Score=51.61  Aligned_cols=121  Identities=21%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             HHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc----ccC
Q 023442           30 EAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA----LLN   86 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~----~~~   86 (282)
                      +-++.+++.+++||-.|==            .|-|--      -+-.++. .+.+.+.+.|.+.| .||.+..    ...
T Consensus       101 ~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~-~l~~~a~~lGme~LvEvh~~~el~~a~~~  179 (695)
T PRK13802        101 DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLK-HLLDLAHELGMTVLVETHTREEIERAIAA  179 (695)
T ss_pred             HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHH-HHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence            4466777788999988831            132210      0111222 23445678888776 5886531    000


Q ss_pred             CC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           87 GI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        87 G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      |.  -+-++|...  .++.+...++....| ++.+|+-+||.|++|+.++.+.|+|+|.||.++|..|..
T Consensus       180 ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp  249 (695)
T PRK13802        180 GAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDH  249 (695)
T ss_pred             CCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCH
Confidence            10  001222222  223444556655444 567899999999999999999999999999999999985

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.48  E-value=0.047  Score=52.48  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             HHhCCCCEEEEecC------CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           68 SSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        68 le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      |-++|+|.|.|--.      |+...+.+..+...+    |+ +.+.+.. ..+|||+-|||.++-++.+++..|++.||+
T Consensus       309 LI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAV----y~-va~~A~q-~gvpviADGGiq~~Ghi~KAl~lGAstVMm  382 (503)
T KOG2550|consen  309 LIAAGADGLRVGMGSGSICITQKVMACGRPQGTAV----YK-VAEFANQ-FGVPCIADGGIQNVGHVVKALGLGASTVMM  382 (503)
T ss_pred             HHHccCceeEeccccCceeeeceeeeccCCcccch----hh-HHHHHHh-cCCceeecCCcCccchhHhhhhcCchhhee
Confidence            45789999988422      222222111111111    11 3344444 389999999999999999999999999999


Q ss_pred             cHHhhh
Q 023442          142 GRAAYQ  147 (282)
Q Consensus       142 GRgal~  147 (282)
                      | ++|+
T Consensus       383 G-~lLA  387 (503)
T KOG2550|consen  383 G-GLLA  387 (503)
T ss_pred             c-ceee
Confidence            9 5544

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=94.43  E-value=1.1  Score=40.99  Aligned_cols=112  Identities=15%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE-ecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V-H~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++..+-     ..++||.+|.-...    +.+|+...+. .+.+.|..-|.+ |..+..|.+..   .  
T Consensus       114 I~s~~~~n~~LL~~~a-----~~gkPVilk~G~~~----t~~e~~~Ave-~i~~~Gn~~i~l~~rG~s~y~~~~---~--  178 (260)
T TIGR01361       114 IGARNMQNFELLKEVG-----KQGKPVLLKRGMGN----TIEEWLYAAE-YILSSGNGNVILCERGIRTFEKAT---R--  178 (260)
T ss_pred             ECcccccCHHHHHHHh-----cCCCcEEEeCCCCC----CHHHHHHHHH-HHHHcCCCcEEEEECCCCCCCCCC---c--
Confidence            4788899988654442     24899999964321    3445554443 456788865555 64354442211   1  


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEc-cCCCC-----HHHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~n-GdI~s-----~eda~~~l~~g~DgVmIGRga  145 (282)
                       ..+++..+..+++.+ ++||+.+ +=...     +..+..+...|+||+||=+-.
T Consensus       179 -~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~  232 (260)
T TIGR01361       179 -NTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP  232 (260)
T ss_pred             -CCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence             124577777776644 7999993 22222     444555556899999887544

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=94.42  E-value=0.7  Score=39.45  Aligned_cols=97  Identities=16%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhcC-Cc-cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442           28 VGEAMSVIAANT-NV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        28 ~~eiv~~v~~~~-~i-pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      +.+.++++++.. .. ++.|-++       +.+++.+    . .++|+|.|-+-.-+       +.+      + -+.+.
T Consensus        66 i~~av~~~~~~~~~~~~I~VEv~-------~~ee~~e----a-~~~g~d~I~lD~~~-------~~~------~-~~~v~  119 (169)
T PF01729_consen   66 IEEAVKAARQAAPEKKKIEVEVE-------NLEEAEE----A-LEAGADIIMLDNMS-------PED------L-KEAVE  119 (169)
T ss_dssp             HHHHHHHHHHHSTTTSEEEEEES-------SHHHHHH----H-HHTT-SEEEEES-C-------HHH------H-HHHHH
T ss_pred             HHHHHHHHHHhCCCCceEEEEcC-------CHHHHHH----H-HHhCCCEEEecCcC-------HHH------H-HHHHH
Confidence            456666666654 22 3666553       2344322    2 36899999876532       111      0 11222


Q ss_pred             HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+....+++.|.++||| |.+.+.++.++|+|.+.+|.-...-|++
T Consensus       120 ~l~~~~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~~~  164 (169)
T PF01729_consen  120 ELRELNPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAPPL  164 (169)
T ss_dssp             HHHHHTTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE--
T ss_pred             HHhhcCCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCccc
Confidence            33233567999999998 8999999999999999999776666654

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=94.42  E-value=0.47  Score=41.60  Aligned_cols=47  Identities=23%  Similarity=0.444  Sum_probs=38.7

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++.+..+.. ...-||+..|||.-.||.+.+...||+||.+|+++...
T Consensus       170 ~E~l~~~~~-~s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G  216 (229)
T COG1411         170 YELLTKVLE-LSEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG  216 (229)
T ss_pred             HHHHHHHHH-hccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcC
Confidence            666655544 35679999999999999999998999999999987543

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=94.42  E-value=0.79  Score=43.09  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=67.4

Q ss_pred             cccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCC--CCcHHHHHHHHHHHHHhCCCCEEEEecCCccc--CCCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL--NGISPAE   92 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~--~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~--~G~~~ad   92 (282)
                      +++.+.+|+.. +-++.+++.. +.|+.+-+-  ...  ..+.+++    .+..+..+++++.+|--....  +...+.+
T Consensus        90 ~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~--~~~~~~~~~~~~----~~~i~~~~adalel~l~~~q~~~~~~~~~d  162 (326)
T cd02811          90 QRAALEDPELA-ESFTVVREAPPNGPLIANLG--AVQLNGYGVEEA----RRAVEMIEADALAIHLNPLQEAVQPEGDRD  162 (326)
T ss_pred             chhhccChhhh-hHHHHHHHhCCCceEEeecC--ccccCCCCHHHH----HHHHHhcCCCcEEEeCcchHhhcCCCCCcC
Confidence            44456678866 6678887766 488777443  222  1133332    334556789999999632110  1001111


Q ss_pred             cCCCCCccH-HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442           93 NRTIPPLKY-EYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        93 ~~~i~~~~~-~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++     .| +.+..+++. .++||+.  +|.-.|.++++.+.+.|+|+|-++
T Consensus       163 f~-----~~~~~i~~l~~~-~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs  209 (326)
T cd02811         163 FR-----GWLERIEELVKA-LSVPVIVKEVGFGISRETAKRLADAGVKAIDVA  209 (326)
T ss_pred             HH-----HHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            10     01 445666654 4889986  666689999998888999999875

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.40  E-value=0.73  Score=42.48  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+|.|.+-.     .|             .+.+.++++.. ..+||.+.||| |.+.+.++.++|+|+|.+|.--..
T Consensus       205 ~~~gaDyI~lD~-----~~-------------~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~s  265 (277)
T PRK08072        205 VAAGADIIMFDN-----RT-------------PDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTHS  265 (277)
T ss_pred             HHcCCCEEEECC-----CC-------------HHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcC
Confidence            479999997721     11             34455555432 35788999999 999999999999999999964443


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      -|++
T Consensus       266 a~~~  269 (277)
T PRK08072        266 VKAL  269 (277)
T ss_pred             Cccc
Confidence            4553

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=94.32  E-value=0.073  Score=47.57  Aligned_cols=50  Identities=20%  Similarity=0.345  Sum_probs=40.7

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      .-+.+++++.   ..|+|..|||+|+|+|.++.+.|||.|..|--+..+|.-+
T Consensus       181 ~~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~  230 (240)
T COG1646         181 PVEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKA  230 (240)
T ss_pred             CHHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHH
Confidence            3455544433   3499999999999999999999999999999999988653

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.28  E-value=0.24  Score=45.64  Aligned_cols=64  Identities=9%  Similarity=0.090  Sum_probs=45.7

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|+|.|.+-.     .             ..+.+.++++.. +++|+++.||| |.+.+.++.++|+|+|.+|.--..
T Consensus       206 ~~~gaD~I~LD~-----~-------------~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s  266 (277)
T PRK05742        206 LAAGADIVMLDE-----L-------------SLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTKD  266 (277)
T ss_pred             HHcCCCEEEECC-----C-------------CHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhcC
Confidence            478999996621     0             134444444422 47999999999 799999999999999999965444


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      -|++
T Consensus       267 ~~~~  270 (277)
T PRK05742        267 VKAV  270 (277)
T ss_pred             Cccc
Confidence            4443

>PRK06852 aldolase; Validated

Probab=94.23  E-value=1.1  Score=41.77  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHH----HHH
Q 023442           59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNA----ALR  133 (282)
Q Consensus        59 e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~----~l~  133 (282)
                      +++..++++..+.|+|.|-+---+....|            .-+.+.++++....+||+..||=. +.+++.+    .++
T Consensus       188 ~~ia~aaRiaaELGADIVKv~y~~~~~~g------------~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~  255 (304)
T PRK06852        188 HLIAGAAGVAACLGADFVKVNYPKKEGAN------------PAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIH  255 (304)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCCCcCCCC------------CHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence            34455678888888888866532210001            135566776643368987777755 4444544    444


Q ss_pred             -cCCCEEEecHHhhhCCc
Q 023442          134 -KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 -~g~DgVmIGRgal~nP~  150 (282)
                       .|+.||++||-+...|.
T Consensus       256 ~aGa~Gv~~GRNIfQ~~~  273 (304)
T PRK06852        256 ISGASGNATGRNIHQKPL  273 (304)
T ss_pred             HcCCceeeechhhhcCCC
Confidence             69999999998877754

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=94.21  E-value=0.38  Score=42.36  Aligned_cols=68  Identities=18%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .++|++.+-+.+-.. ..|             -.+++.+..=++++|++..||| |.+.+.+.++.|+.+|.+|..+...
T Consensus       118 ~~~Ga~~vKlFPA~~-~GG-------------~~yikal~~plp~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~  182 (204)
T TIGR01182       118 LELGITALKLFPAEV-SGG-------------VKMLKALAGPFPQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPK  182 (204)
T ss_pred             HHCCCCEEEECCchh-cCC-------------HHHHHHHhccCCCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCc
Confidence            478899888876321 112             2456666655789999999999 6799999999999999999888755


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      ..+
T Consensus       183 ~~~  185 (204)
T TIGR01182       183 DLI  185 (204)
T ss_pred             hhh
Confidence            543

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK08227 autoinducer 2 aldolase; Validated

Probab=94.18  E-value=0.99  Score=41.35  Aligned_cols=48  Identities=19%  Similarity=0.264  Sum_probs=34.3

Q ss_pred             HHHHHHHhcCCCceEEEccCCC-CHHHHHHHHH----cCCCEEEecHHhhhCCc
Q 023442          102 EYYYALLRDFPDLTFTLNGGIN-TVDEVNAALR----KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~----~g~DgVmIGRgal~nP~  150 (282)
                      +.+.++++. ..+||+..||=. +.+++.++..    .|+.||.+||-....|.
T Consensus       182 ~~f~~vv~a-~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~  234 (264)
T PRK08227        182 EGFERITAG-CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH  234 (264)
T ss_pred             HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence            456777774 468998877755 4455555543    79999999998876654

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=94.18  E-value=0.28  Score=48.79  Aligned_cols=75  Identities=13%  Similarity=0.084  Sum_probs=52.3

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC---EEEecHH
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH---HVMVGRA  144 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D---gVmIGRg  144 (282)
                      +.+.|+|+|.+.+=..  ...  ...  -++..++.+..+.+. .++||++-||| +++++.+++++|++   ||.++++
T Consensus       406 a~~~gadyi~~gpif~--t~t--k~~--~~~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~  477 (502)
T PLN02898        406 AWKDGADYIGCGGVFP--TNT--KAN--NKTIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESGAPNLKGVAVVSA  477 (502)
T ss_pred             HhhcCCCEEEECCeec--CCC--CCC--CCCCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeH
Confidence            3467888887542100  000  010  135567888777654 58999999999 69999999998887   9999999


Q ss_pred             hhhCCc
Q 023442          145 AYQNPW  150 (282)
Q Consensus       145 al~nP~  150 (282)
                      ++..+.
T Consensus       478 i~~~~d  483 (502)
T PLN02898        478 LFDQED  483 (502)
T ss_pred             HhcCCC
Confidence            986554

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.15  E-value=0.35  Score=42.47  Aligned_cols=62  Identities=11%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +++.+.+.|+..|.|.-|+..               ..+.+.++.++++++ +||.|-|.|.++++++++.|+++++-
T Consensus        21 ia~al~~gGi~~iEit~~tp~---------------a~~~I~~l~~~~~~~-~vGAGTVl~~e~a~~ai~aGA~FivS   82 (201)
T PRK06015         21 LARALAAGGLPAIEITLRTPA---------------ALDAIRAVAAEVEEA-IVGAGTILNAKQFEDAAKAGSRFIVS   82 (201)
T ss_pred             HHHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHCCCC-EEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence            456677999999999987631               156777887777653 68999999999999999999998874

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=94.06  E-value=0.98  Score=42.90  Aligned_cols=42  Identities=21%  Similarity=0.379  Sum_probs=34.9

Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ..|+.+..+++. .++|||.- +|.+.+|++.+.+.|||+|.+.
T Consensus       200 ~~~~~i~~l~~~-~~~PvivK-gv~~~~dA~~a~~~G~d~I~vs  241 (344)
T cd02922         200 LTWDDIKWLRKH-TKLPIVLK-GVQTVEDAVLAAEYGVDGIVLS  241 (344)
T ss_pred             CCHHHHHHHHHh-cCCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence            468888888764 58898876 6789999999999999999875

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PLN02535 glycolate oxidase

Probab=94.06  E-value=0.89  Score=43.53  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=35.9

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.|+.+..+.+. .++|||. .+|.+++|++.+.+.|+|+|.+.
T Consensus       208 ~~~tW~~i~~lr~~-~~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs  251 (364)
T PLN02535        208 ASLSWKDIEWLRSI-TNLPILI-KGVLTREDAIKAVEVGVAGIIVS  251 (364)
T ss_pred             CCCCHHHHHHHHhc-cCCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence            45679998888764 6899854 66799999999999999999774

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=93.99  E-value=0.43  Score=47.00  Aligned_cols=120  Identities=18%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             HHHHHHhhcCCccEEEEe-----------c-CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCcc----cC
Q 023442           30 EAMSVIAANTNVPVSVKC-----------R-IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKAL----LN   86 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKi-----------R-~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~----~~   86 (282)
                      +-++.+++.+++||-.|=           | .|-|--      -+-+++.+ +...+.+.|.+.| .||.....    ..
T Consensus       100 ~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~-l~~~a~~lGl~~lvEvh~~~El~~al~~  178 (454)
T PRK09427        100 DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQ-LAAVAHSLNMGVLTEVSNEEELERAIAL  178 (454)
T ss_pred             HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHH-HHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence            445677888889998882           1 233321      01112222 3345677888765 58854310    00


Q ss_pred             CC--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           87 GI--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        87 G~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      |.  -+-+++...  .++.+...++....+ ++.+|+-+||.|++|+.++.. |+|||.||.++|.+|..
T Consensus       179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~  247 (454)
T PRK09427        179 GAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDL  247 (454)
T ss_pred             CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCH
Confidence            10  001222221  223444556655444 577899999999999999765 79999999999999985

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=93.96  E-value=0.46  Score=42.84  Aligned_cols=54  Identities=17%  Similarity=0.147  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      -..+.+.+.++.|...+++||++.+..|+.+.   ..+.+.+ +.+.++|++.|.+-.
T Consensus        52 ~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v-~~~~~~G~~gv~iED  105 (243)
T cd00377          52 LTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTV-RELEEAGAAGIHIED  105 (243)
T ss_pred             CCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHH-HHHHHcCCEEEEEec
Confidence            34577778888888888999999999998653   3344443 445679999999953

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PLN02979 glycolate oxidase

Probab=93.94  E-value=0.9  Score=43.46  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=35.6

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +++.|+.+..+.+ ..++|||.-| |.+.+|++++.+.|+|+|.++
T Consensus       208 ~~ltW~dl~wlr~-~~~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vs  251 (366)
T PLN02979        208 RTLSWKDVQWLQT-ITKLPILVKG-VLTGEDARIAIQAGAAGIIVS  251 (366)
T ss_pred             CCCCHHHHHHHHh-ccCCCEEeec-CCCHHHHHHHHhcCCCEEEEC
Confidence            4567998877766 4689987654 679999999999999999874

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=93.94  E-value=0.24  Score=45.39  Aligned_cols=63  Identities=16%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|+|.|-+-.-                  ..+.+.+.++... ++|+.+.||| |.+.+.++.++|+|+|.+|.--..
T Consensus       199 ~~~gaDyI~ld~~------------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~  259 (268)
T cd01572         199 LEAGADIIMLDNM------------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISVGALTHS  259 (268)
T ss_pred             HHcCCCEEEECCc------------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeecC
Confidence            4678888876431                  1344555544322 5899999999 799999999999999999964433


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      -|+
T Consensus       260 a~~  262 (268)
T cd01572         260 APA  262 (268)
T ss_pred             CCc
Confidence            343

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.90  E-value=1.1  Score=39.73  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=49.9

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCc--eEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDL--TFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~i--pVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      +++.+.+.|+..+.|.-|+..               ..+.+.++.+++++-  -++|.|-|.|.++++++++.|++++|
T Consensus        30 ~~~al~~~Gi~~iEit~~~~~---------------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv   93 (213)
T PRK06552         30 ISLAVIKGGIKAIEVTYTNPF---------------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV   93 (213)
T ss_pred             HHHHHHHCCCCEEEEECCCcc---------------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence            456778999999999988631               156777887766422  36899999999999999999999998

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=93.88  E-value=0.58  Score=41.75  Aligned_cols=49  Identities=20%  Similarity=0.466  Sum_probs=38.2

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .+.+.++.+..+...|..-||| +.+.+..+.+.|+|.+.+||++..++.
T Consensus       161 ~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d  209 (228)
T PTZ00170        161 MPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKD  209 (228)
T ss_pred             HHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCC
Confidence            4445555554445778899999 778999899999999999999876665

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.84  E-value=0.16  Score=50.61  Aligned_cols=68  Identities=16%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.|.++|+|.|.|. .+   .|.+  ++      ..+.++++++.++.--.|+.|.|.|+++++.+++.|||+|.+|.|
T Consensus       247 a~~Lv~aGvd~i~vd-~a---~g~~--~~------~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g  314 (502)
T PRK07107        247 VPALVEAGADVLCID-SS---EGYS--EW------QKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG  314 (502)
T ss_pred             HHHHHHhCCCeEeec-Cc---cccc--HH------HHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence            344667999999986 22   1221  10      145566776666532346889999999999999999999998543

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=93.84  E-value=1.3  Score=41.69  Aligned_cols=103  Identities=12%  Similarity=0.109  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC----cccCCCCcCCcCCCCCccH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt----~~~~G~~~ad~~~i~~~~~  101 (282)
                      +...+-++..++..+.||.+-+- |.    +.+++.+ +++.++++|+|+|.+|---    ....|.      ..+..-.
T Consensus        85 ~~~~~~i~~~~~~~~~pvi~si~-g~----~~~~~~~-~a~~~~~~gad~iElN~s~~~~~~~~~g~------~~~~~~~  152 (325)
T cd04739          85 EEYLELIRRAKRAVSIPVIASLN-GV----SAGGWVD-YARQIEEAGADALELNIYALPTDPDISGA------EVEQRYL  152 (325)
T ss_pred             HHHHHHHHHHHhccCCeEEEEeC-CC----CHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCCCcccc------hHHHHHH
Confidence            44444444555555789888762 32    2234444 4556788999999998531    111111      0111112


Q ss_pred             HHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +.+.++.+ ..++||+.  ++++.+..++.+.++ .|+|+|.+
T Consensus       153 eiv~~v~~-~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~  194 (325)
T cd04739         153 DILRAVKS-AVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL  194 (325)
T ss_pred             HHHHHHHh-ccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence            34445544 35789874  667777777777666 99999965

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=93.81  E-value=0.83  Score=43.55  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe----cHHhhhCC
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV----GRAAYQNP  149 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI----GRgal~nP  149 (282)
                      .+.|+.+..+.+. .++||+.-| |.+++|++.+.+.|||+|.+    ||-+..-|
T Consensus       207 ~~~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~  260 (351)
T cd04737         207 KLSPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGP  260 (351)
T ss_pred             CCCHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCc
Confidence            4568888777664 589999886 89999999999999999988    55444444

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=93.68  E-value=0.98  Score=39.93  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      +++.+-+.|++.|.|.-|+..               ..+.|+.+++++++ -+||.|-|.|++++.++.+.|++.+.
T Consensus        30 ~a~Ali~gGi~~IEITl~sp~---------------a~e~I~~l~~~~p~-~lIGAGTVL~~~q~~~a~~aGa~fiV   90 (211)
T COG0800          30 LAKALIEGGIPAIEITLRTPA---------------ALEAIRALAKEFPE-ALIGAGTVLNPEQARQAIAAGAQFIV   90 (211)
T ss_pred             HHHHHHHcCCCeEEEecCCCC---------------HHHHHHHHHHhCcc-cEEccccccCHHHHHHHHHcCCCEEE
Confidence            456777999999999998731               16778888888774 48899999999999999999999765

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=93.63  E-value=1.1  Score=40.72  Aligned_cols=100  Identities=12%  Similarity=0.034  Sum_probs=63.8

Q ss_pred             cCCHHHHHHHHHHHhhcCCcc-EEEEecCCCCCCC-cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ip-vsvKiR~G~d~~~-~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      .-..+.+...+++|...++.| |++.+  ++.... +.++.++.+.++++++|++++.+-+...                
T Consensus        54 ~vtl~em~~~~~~V~r~~~~p~viaD~--~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~~----------------  115 (254)
T cd06557          54 PVTLDEMIYHTRAVRRGAPRALVVADM--PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGAE----------------  115 (254)
T ss_pred             CcCHHHHHHHHHHHHhcCCCCeEEEeC--CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcHH----------------
Confidence            335567778888888888889 77776  333322 3556666777888889999999876310                


Q ss_pred             cHHHHHHHHhcCCCceEE-----------EccCCC----CHH-------HHHHHHHcCCCEEEe
Q 023442          100 KYEYYYALLRDFPDLTFT-----------LNGGIN----TVD-------EVNAALRKGAHHVMV  141 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi-----------~nGdI~----s~e-------da~~~l~~g~DgVmI  141 (282)
                      .-+.++.+.+  ..|||+           ..||..    |.+       +++.+.+.|||+|.+
T Consensus       116 ~~~~I~al~~--agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l  177 (254)
T cd06557         116 VAETIRALVD--AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL  177 (254)
T ss_pred             HHHHHHHHHH--cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence            0233445544  367877           456542    343       333333479999877

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=93.63  E-value=1.1  Score=41.27  Aligned_cols=39  Identities=13%  Similarity=0.269  Sum_probs=32.7

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +++.+.++||| |.+.+.++.++|+|.+.+|.--..-|++
T Consensus       230 ~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~  268 (278)
T PRK08385        230 ERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVRNF  268 (278)
T ss_pred             CCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCcc
Confidence            47889999999 9999999999999999999655435553

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=93.54  E-value=1.3  Score=41.09  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      .+.+++.|++.|.+|.-... .|..         ..|+.+.++++. .++||+.- ++.|+++++.+.+.|+|+|.+
T Consensus       135 i~~~~~~g~~~i~l~~~~p~-~~~~---------~~~~~i~~l~~~-~~~pvivK-~v~s~~~a~~a~~~G~d~I~v  199 (299)
T cd02809         135 LRRAEAAGYKALVLTVDTPV-LGRR---------LTWDDLAWLRSQ-WKGPLILK-GILTPEDALRAVDAGADGIVV  199 (299)
T ss_pred             HHHHHHcCCCEEEEecCCCC-CCCC---------CCHHHHHHHHHh-cCCCEEEe-ecCCHHHHHHHHHCCCCEEEE
Confidence            34557889999999964321 1211         237778777764 46898875 478999999999999999977

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.35  E-value=1.2  Score=40.70  Aligned_cols=110  Identities=15%  Similarity=0.198  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHhh--cCCccEEEEecC-CCCC-C--CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           23 LDPKFVGEAMSVIAA--NTNVPVSVKCRI-GVDD-H--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~--~~~ipvsvKiR~-G~d~-~--~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .+.+.+.++.+.+..  ..++|+.+=+-. |... .  +...+.....+++..+.|+|.|-+-     |.|.        
T Consensus       124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~-----ytg~--------  190 (265)
T COG1830         124 TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK-----YTGD--------  190 (265)
T ss_pred             chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec-----CCCC--------
Confidence            345555555554433  246777653321 2111 0  1112334445677778888877332     2221        


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCC--HHHHHHHH----HcCCCEEEecHHhhhCCc
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINT--VDEVNAAL----RKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s--~eda~~~l----~~g~DgVmIGRgal~nP~  150 (282)
                          -+.|+++++-.+ +||+..||=.+  .+++.++.    +.|+-|+.+||-+...|.
T Consensus       191 ----~e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~  245 (265)
T COG1830         191 ----PESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED  245 (265)
T ss_pred             ----hHHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence                355667777555 99998888654  55555544    379999999998766654

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=93.33  E-value=0.46  Score=43.25  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..+++|+++|.|..-..++.|.            ++.+..+.+. +++||+.--=|.++-++..+.+.|||+|.+.=
T Consensus        75 ~A~~~~~~GA~aisvlte~~~f~g~------------~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~  141 (260)
T PRK00278         75 IAKAYEAGGAACLSVLTDERFFQGS------------LEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIV  141 (260)
T ss_pred             HHHHHHhCCCeEEEEecccccCCCC------------HHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEe
Confidence            4566789999999998766555553            6667676654 68999987667888888888889999998776


Q ss_pred             HhhhCCcc
Q 023442          144 AAYQNPWY  151 (282)
Q Consensus       144 gal~nP~i  151 (282)
                      .++....+
T Consensus       142 ~~l~~~~l  149 (260)
T PRK00278        142 AALDDEQL  149 (260)
T ss_pred             ccCCHHHH
Confidence            66544343

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=93.28  E-value=1.4  Score=40.81  Aligned_cols=111  Identities=9%  Similarity=0.044  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-----cccCCCCcCCcCCCCCc
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-----ALLNGISPAENRTIPPL   99 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-----~~~~G~~~ad~~~i~~~   99 (282)
                      .+.+.+.++.|..++++||++.+-.| .+   ...+.+.+ +.+.++|+..|.+--.+     ....+...  ...++.-
T Consensus        63 ~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~~~v~r~V-~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~--~~l~s~e  135 (285)
T TIGR02320        63 WTQRLDVVEFMFDVTTKPIILDGDTG-GN---FEHFRRLV-RKLERRGVSAVCIEDKLGLKKNSLFGNDVA--QPQASVE  135 (285)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecCCC-CC---HHHHHHHH-HHHHHcCCeEEEEeccCCCccccccCCCCc--ccccCHH
Confidence            34455667888888899999999888 33   23444444 45678999999993221     11111100  0111110


Q ss_pred             -cHHHHHHHHh--cCCCceEEEccCCC----CHHHHHHHH----HcCCCEEEec
Q 023442          100 -KYEYYYALLR--DFPDLTFTLNGGIN----TVDEVNAAL----RKGAHHVMVG  142 (282)
Q Consensus       100 -~~~~i~~l~~--~~~~ipVi~nGdI~----s~eda~~~l----~~g~DgVmIG  142 (282)
                       ..+.++..++  ..++++|++-=|..    ..+++.+-.    +.|||+|++=
T Consensus       136 e~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~  189 (285)
T TIGR02320       136 EFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH  189 (285)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence             1112222222  12467887763322    345544333    3799999994

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=93.18  E-value=1.8  Score=40.12  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEe-cCCCCCC---------CcHHHHHHHHHHHHHhCCCCEEEEecCCc--ccCCCCcC
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKC-RIGVDDH---------DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPA   91 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKi-R~G~d~~---------~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~a   91 (282)
                      +.+...++++-.+. .+++|-.=+ ++|-.+.         .+.++..+    .+++.|+|.|.|.-.|.  .|+|.   
T Consensus       116 Ni~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~----Fv~~TgvD~LAvaiGt~HG~Y~~~---  187 (285)
T PRK07709        116 NVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKH----LVEATGIDCLAPALGSVHGPYKGE---  187 (285)
T ss_pred             HHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHH----HHHHhCCCEEEEeecccccCcCCC---
Confidence            44555555555443 366664443 2322111         23444444    34688999999875552  34332   


Q ss_pred             CcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEecHHh
Q 023442           92 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRga  145 (282)
                           |.++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|+..+
T Consensus       188 -----p~L~~~~L~~I~~~-~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l  236 (285)
T PRK07709        188 -----PNLGFAEMEQVRDF-TGVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN  236 (285)
T ss_pred             -----CccCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence                 45679988888765 58999998886655 77888888888877777554

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=93.02  E-value=1.6  Score=41.81  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.|+.+..+.+ ..++|||.= +|.+++|++++.+.|||+|.++
T Consensus       209 ~~~tW~di~wlr~-~~~~PiivK-gV~~~~dA~~a~~~Gvd~I~Vs  252 (367)
T PLN02493        209 RTLSWKDVQWLQT-ITKLPILVK-GVLTGEDARIAIQAGAAGIIVS  252 (367)
T ss_pred             CCCCHHHHHHHHh-ccCCCEEee-cCCCHHHHHHHHHcCCCEEEEC
Confidence            3457888877765 468998664 5679999999999999999874

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=93.00  E-value=2.1  Score=39.26  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             HHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC
Q 023442           32 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF  111 (282)
Q Consensus        32 v~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~  111 (282)
                      +...++..+.|+.+=++- .    +.++.++ +++.++++|+|.|.+|-......+. ...+-.-+..-.+.+.++.+ .
T Consensus        81 ~~~~~~~~~~p~ivsi~g-~----~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~-~  152 (296)
T cd04740          81 LLPWLREFGTPVIASIAG-S----TVEEFVE-VAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKK-A  152 (296)
T ss_pred             HHHHhhcCCCcEEEEEec-C----CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHh-c
Confidence            333444457888887752 2    2334444 4567788999999998533211111 01111111111233444444 3


Q ss_pred             CCceEE--EccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          112 PDLTFT--LNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       112 ~~ipVi--~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      .++||+  .+.++.+..++.+.++ .|+|+|.+
T Consensus       153 ~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         153 TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            478886  4566655555555444 89999865

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.00  E-value=1.9  Score=38.41  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH----hcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL----RDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~----~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      +++.+.+.|+..|.|.-||..               ..+.+.++.    ++++++ ++|.|-|.|.++++++++.|++++
T Consensus        32 ~~~al~~gGi~~iEiT~~tp~---------------a~~~i~~l~~~~~~~~p~~-~vGaGTVl~~e~a~~a~~aGA~Fi   95 (222)
T PRK07114         32 VIKACYDGGARVFEFTNRGDF---------------AHEVFAELVKYAAKELPGM-ILGVGSIVDAATAALYIQLGANFI   95 (222)
T ss_pred             HHHHHHHCCCCEEEEeCCCCc---------------HHHHHHHHHHHHHhhCCCe-EEeeEeCcCHHHHHHHHHcCCCEE
Confidence            456677999999999998731               134454553    334444 689999999999999999999988


Q ss_pred             EecHHhhhCCcc
Q 023442          140 MVGRAAYQNPWY  151 (282)
Q Consensus       140 mIGRgal~nP~i  151 (282)
                      |-= +  .||.+
T Consensus        96 VsP-~--~~~~v  104 (222)
T PRK07114         96 VTP-L--FNPDI  104 (222)
T ss_pred             ECC-C--CCHHH
Confidence            742 2  35555

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=92.82  E-value=2.8  Score=38.07  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+++.+++..+-+     .++||.+|.-. .   .+.+|+...+ ..+.+.|...|. +|-.+..|.  .+.  +.
T Consensus       104 Igs~~~~n~~LL~~va~-----tgkPVilk~G~-~---~t~~e~~~A~-e~i~~~Gn~~i~L~eRg~~~Y~--~~~--~n  169 (250)
T PRK13397        104 VGARNMQNFEFLKTLSH-----IDKPILFKRGL-M---ATIEEYLGAL-SYLQDTGKSNIILCERGVRGYD--VET--RN  169 (250)
T ss_pred             ECcccccCHHHHHHHHc-----cCCeEEEeCCC-C---CCHHHHHHHH-HHHHHcCCCeEEEEccccCCCC--Ccc--cc
Confidence            47888999777555433     38999999532 2   2345555443 445678886554 562232221  111  10


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEc----cCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLN----GGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~n----GdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                        .++...+..+++. .++|||..    +|.+.  +.-+..++..|+||+||=+-.
T Consensus       170 --~~dl~ai~~lk~~-~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~  222 (250)
T PRK13397        170 --MLDIMAVPIIQQK-TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP  222 (250)
T ss_pred             --ccCHHHHHHHHHH-hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence              2234455555544 47998874    44332  233444555899999987543

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=92.72  E-value=0.33  Score=42.46  Aligned_cols=68  Identities=28%  Similarity=0.356  Sum_probs=47.9

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .++|++.+-+.+-.. ..|             -.+++.+..-+++++++..||| |.+++.+.++.|+.+|.+|..+..+
T Consensus       118 ~~~G~~~vK~FPA~~-~GG-------------~~~ik~l~~p~p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~  182 (196)
T PF01081_consen  118 LEAGADIVKLFPAGA-LGG-------------PSYIKALRGPFPDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPK  182 (196)
T ss_dssp             HHTT-SEEEETTTTT-TTH-------------HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSH
T ss_pred             HHCCCCEEEEecchh-cCc-------------HHHHHHHhccCCCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCH
Confidence            478999888876321 111             3566677665789999999999 5689999999999999999766555


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      .++
T Consensus       183 ~~i  185 (196)
T PF01081_consen  183 DLI  185 (196)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.66  E-value=0.91  Score=40.50  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|++.+-+.+-.  ..|             -.+++.+..=+++++++..|||.. .+++.+.++.|+.+|.+|..+..
T Consensus       129 ~~~Ga~~vKlFPA~--~~G-------------~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~  193 (222)
T PRK07114        129 EELGCEIVKLFPGS--VYG-------------PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP  193 (222)
T ss_pred             HHCCCCEEEECccc--ccC-------------HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence            47899999887622  112             245556655568999999999974 58999999999999999988876


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      +.++
T Consensus       194 ~~~~  197 (222)
T PRK07114        194 KEAL  197 (222)
T ss_pred             cccc
Confidence            6654

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=92.58  E-value=2.1  Score=40.53  Aligned_cols=112  Identities=15%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+++.+++.++-+     +++||.+|.-...    +++|+...+ ..+...|...++ +|..+..|.+..      
T Consensus       182 IgAr~~~N~~LL~~va~-----~~kPViLk~G~~~----ti~E~l~A~-e~i~~~GN~~viL~erG~~tf~~~~------  245 (335)
T PRK08673        182 IGARNMQNFDLLKEVGK-----TNKPVLLKRGMSA----TIEEWLMAA-EYILAEGNPNVILCERGIRTFETAT------  245 (335)
T ss_pred             ECcccccCHHHHHHHHc-----CCCcEEEeCCCCC----CHHHHHHHH-HHHHHcCCCeEEEEECCCCCCCCcC------
Confidence            48889999988666543     4899999964321    344555433 345677886554 564343332211      


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEcc----CCC--CHHHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNG----GIN--TVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nG----dI~--s~eda~~~l~~g~DgVmIGRga  145 (282)
                      ...+++..+..+++. .++|||+.=    |..  -+..+..+...||||+||=.-.
T Consensus       246 ~~~ldl~ai~~lk~~-~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~  300 (335)
T PRK08673        246 RNTLDLSAVPVIKKL-THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP  300 (335)
T ss_pred             hhhhhHHHHHHHHHh-cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence            012345556555543 479997742    221  1244555556899999998543

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=92.57  E-value=2.3  Score=40.73  Aligned_cols=116  Identities=17%  Similarity=0.112  Sum_probs=68.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC-EEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~-~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++..+-    + .+.||.+|.-.+    .+.+|+...+. .+.+.|.. .+.+|-.+..|.  ++    .
T Consensus       207 I~s~~~~n~~LL~~~a----~-~gkPVilk~G~~----~t~~e~~~Ave-~i~~~Gn~~i~L~erg~s~yp--~~----~  270 (360)
T PRK12595        207 IGARNMQNFELLKAAG----R-VNKPVLLKRGLS----ATIEEFIYAAE-YIMSQGNGQIILCERGIRTYE--KA----T  270 (360)
T ss_pred             ECcccccCHHHHHHHH----c-cCCcEEEeCCCC----CCHHHHHHHHH-HHHHCCCCCEEEECCccCCCC--CC----C
Confidence            4788899976654443    2 489999996432    13455554443 44578885 444562333322  11    0


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCC----H--HHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINT----V--DEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s----~--eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ...+++..+..+.+.+ ++||+.+-|=..    .  .-+..+...||||+||=+-.  ||..
T Consensus       271 ~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~  329 (360)
T PRK12595        271 RNTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAV  329 (360)
T ss_pred             CCCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence            1123577776776644 799999544222    1  13333445899999999888  8775

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=92.54  E-value=2  Score=41.16  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=36.1

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.|+.+..+++. .++||+.= +|.+.+|++.+.+.|+|+|.|+
T Consensus       213 ~~~~w~~i~~l~~~-~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS  256 (367)
T TIGR02708       213 QKLSPRDIEEIAGY-SGLPVYVK-GPQCPEDADRALKAGASGIWVT  256 (367)
T ss_pred             CCCCHHHHHHHHHh-cCCCEEEe-CCCCHHHHHHHHHcCcCEEEEC
Confidence            34679988888664 68999877 4889999999999999998664

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=92.47  E-value=1.9  Score=39.79  Aligned_cols=90  Identities=12%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442           27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      -+.+.++.+++.. ..+|.|=++       +.++..    .. .++|+|.|.+|.-+.       .+       --+.+.
T Consensus       174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~----ea-~~~GaDiI~lDn~~~-------e~-------l~~~v~  227 (277)
T TIGR01334       174 DWGGAIGRLKQTAPERKITVEAD-------TIEQAL----TV-LQASPDILQLDKFTP-------QQ-------LHHLHE  227 (277)
T ss_pred             cHHHHHHHHHHhCCCCCEEEECC-------CHHHHH----HH-HHcCcCEEEECCCCH-------HH-------HHHHHH
Confidence            3557777777653 344555443       344432    22 379999999995321       11       012222


Q ss_pred             HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442          106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus       106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+....+++.|.++||| |++.+.++.++|+|.+++|-
T Consensus       228 ~l~~~~~~~~leasGGI-~~~ni~~ya~~GvD~is~ga  264 (277)
T TIGR01334       228 RLKFFDHIPTLAAAGGI-NPENIADYIEAGIDLFITSA  264 (277)
T ss_pred             HHhccCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCc
Confidence            22222367889999999 89999999999999999984

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK08185 hypothetical protein; Provisional

Probab=92.28  E-value=2.8  Score=38.75  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG  142 (282)
                      +..++.|+|.|.+.-.|.  .|.+.      .-|.++++.+.++.+. .++|+++-|++. +.++++++++.|+-=|=|+
T Consensus       156 ~f~~~TgvD~LAvaiGt~HG~y~~~------~kp~L~~e~l~~I~~~-~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~  228 (283)
T PRK08185        156 DFVSRTGVDTLAVAIGTAHGIYPKD------KKPELQMDLLKEINER-VDIPLVLHGGSANPDAEIAESVQLGVGKINIS  228 (283)
T ss_pred             HHHHhhCCCEEEeccCcccCCcCCC------CCCCcCHHHHHHHHHh-hCCCEEEECCCCCCHHHHHHHHHCCCeEEEeC
Confidence            344567999999932221  22221      1144568888888765 589999999985 5567777888888888777


Q ss_pred             HHh
Q 023442          143 RAA  145 (282)
Q Consensus       143 Rga  145 (282)
                      ..+
T Consensus       229 T~l  231 (283)
T PRK08185        229 SDM  231 (283)
T ss_pred             hHH
Confidence            665

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=92.28  E-value=2.7  Score=38.54  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=64.4

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++.++     ...++||.+|.-...    +++++... +..+...|...++ +|...+...+..      
T Consensus       116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~----s~~e~~~A-~e~i~~~Gn~~i~L~~rG~~t~~~Y~------  179 (266)
T PRK13398        116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSA----TLEEWLYA-AEYIMSEGNENVVLCERGIRTFETYT------  179 (266)
T ss_pred             ECcccccCHHHHHHH-----hcCCCcEEEeCCCCC----CHHHHHHH-HHHHHhcCCCeEEEEECCCCCCCCCC------
Confidence            578889997775555     245899999964321    34455443 3445678885544 453222111110      


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEc-cCCCC-----HHHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLN-GGINT-----VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~n-GdI~s-----~eda~~~l~~g~DgVmIGRga  145 (282)
                      ...+++..+..+.+. .++||+.+ .=...     +..+......|+||+||=+-.
T Consensus       180 ~~~vdl~~i~~lk~~-~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~  234 (266)
T PRK13398        180 RNTLDLAAVAVIKEL-SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP  234 (266)
T ss_pred             HHHHHHHHHHHHHhc-cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence            112345555555443 47899883 22223     555666666899999987544

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.25  E-value=2.9  Score=37.02  Aligned_cols=87  Identities=14%  Similarity=0.212  Sum_probs=60.2

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR  109 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~  109 (282)
                      ++++.+.+.   ++..=+|.  ++   .++..+ +++.+.+.|++.|.|.-++..               ..+.++++.+
T Consensus         7 ~~~~~l~~~---~~iaV~r~--~~---~~~a~~-i~~al~~~Gi~~iEitl~~~~---------------~~~~I~~l~~   62 (212)
T PRK05718          7 SIEEILRAG---PVVPVIVI--NK---LEDAVP-LAKALVAGGLPVLEVTLRTPA---------------ALEAIRLIAK   62 (212)
T ss_pred             HHHHHHHHC---CEEEEEEc--CC---HHHHHH-HHHHHHHcCCCEEEEecCCcc---------------HHHHHHHHHH
Confidence            445555443   33333663  22   233333 456677899999999966521               1566778877


Q ss_pred             cCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ++++ -+|+.|-|.|.++++.+++.|+|.++.
T Consensus        63 ~~p~-~~IGAGTVl~~~~a~~a~~aGA~Fivs   93 (212)
T PRK05718         63 EVPE-ALIGAGTVLNPEQLAQAIEAGAQFIVS   93 (212)
T ss_pred             HCCC-CEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence            7776 468999999999999999999998875

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=92.22  E-value=0.47  Score=43.22  Aligned_cols=74  Identities=18%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.++++|+++|.|-.-..+++|.            ++.+..+.+. .++||...-=|.++-++.+....|||+|.+==
T Consensus        73 ~a~~y~~~GA~aiSVlTe~~~F~Gs------------~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~  139 (254)
T PF00218_consen   73 IAKAYEEAGAAAISVLTEPKFFGGS------------LEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIA  139 (254)
T ss_dssp             HHHHHHHTT-SEEEEE--SCCCHHH------------HHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEG
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCCC------------HHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhH
Confidence            4566789999999999876666664            6777777665 58999998889999999999999999998765


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      ++|.+-.
T Consensus       140 ~~L~~~~  146 (254)
T PF00218_consen  140 AILSDDQ  146 (254)
T ss_dssp             GGSGHHH
T ss_pred             HhCCHHH
Confidence            6655544

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=92.13  E-value=1  Score=39.54  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC
Q 023442           42 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG  121 (282)
Q Consensus        42 pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd  121 (282)
                      ++..=+|.  .   +.++..+ +++.+.+.|+..+.|.-++..               ..+.+.+++++++.--+||.|-
T Consensus        11 ~~~~v~r~--~---~~~~~~~-~~~a~~~gGi~~iEvt~~~~~---------------~~~~i~~l~~~~~~~~~iGaGT   69 (206)
T PRK09140         11 PLIAILRG--I---TPDEALA-HVGALIEAGFRAIEIPLNSPD---------------PFDSIAALVKALGDRALIGAGT   69 (206)
T ss_pred             CEEEEEeC--C---CHHHHHH-HHHHHHHCCCCEEEEeCCCcc---------------HHHHHHHHHHHcCCCcEEeEEe
Confidence            44444673  1   2334343 345567899999999876521               1456777877765434789999


Q ss_pred             CCCHHHHHHHHHcCCCEEEec
Q 023442          122 INTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       122 I~s~eda~~~l~~g~DgVmIG  142 (282)
                      |.+.+++..+++.|+|+++.+
T Consensus        70 V~~~~~~~~a~~aGA~fivsp   90 (206)
T PRK09140         70 VLSPEQVDRLADAGGRLIVTP   90 (206)
T ss_pred             cCCHHHHHHHHHcCCCEEECC
Confidence            999999999999999999996

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.11  E-value=2.9  Score=38.86  Aligned_cols=40  Identities=25%  Similarity=0.387  Sum_probs=33.0

Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+++.+.++||| |.+.+.++.++|+|.+.+|.-...-|++
T Consensus       244 ~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~~~  283 (289)
T PRK07896        244 APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTHSVPVL  283 (289)
T ss_pred             CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCCCcc
Confidence            467889999999 8999999999999999999644434553

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=92.03  E-value=1.7  Score=37.85  Aligned_cols=87  Identities=11%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             HHHHhhcCCccEE--EEecCCCCCC-----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           32 MSVIAANTNVPVS--VKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        32 v~~v~~~~~ipvs--vKiR~G~d~~-----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      ++++++.+++||.  +|-  .+++.     .++++.    . .+-++|++-|.+.+-.+... .          .-.+.+
T Consensus        24 I~aik~~v~lPIIGi~K~--~y~~~~V~ITPT~~ev----~-~l~~aGadIIAlDaT~R~Rp-~----------~l~~li   85 (192)
T PF04131_consen   24 IRAIKKAVDLPIIGIIKR--DYPDSDVYITPTLKEV----D-ALAEAGADIIALDATDRPRP-E----------TLEELI   85 (192)
T ss_dssp             HHHHHTTB-S-EEEE-B---SBTTSS--BS-SHHHH----H-HHHHCT-SEEEEE-SSSS-S-S-----------HHHHH
T ss_pred             HHHHHHhcCCCEEEEEec--cCCCCCeEECCCHHHH----H-HHHHcCCCEEEEecCCCCCC-c----------CHHHHH
Confidence            5778899999983  342  22322     234442    2 24479999999987432110 1          114556


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      .++.+++    +..=.||.|.||+..+.+.|+|.|.
T Consensus        86 ~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~  117 (192)
T PF04131_consen   86 REIKEKY----QLVMADISTLEEAINAAELGFDIIG  117 (192)
T ss_dssp             HHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred             HHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEE
Confidence            6666654    4556799999999999999999764

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=92.03  E-value=1.1  Score=40.50  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=49.9

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ...++..++|+++++|.+   .|.         +.+.+.+...++ ..++||+.+-|+ |++.+..+++. |||+++|..
T Consensus       170 ~dtver~~aDaVI~tG~~---TG~---------~~d~~el~~a~~-~~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~  234 (263)
T COG0434         170 KDTVERGLADAVIVTGSR---TGS---------PPDLEELKLAKE-AVDTPVLVGSGV-NPENIEELLKI-ADGVIVGTS  234 (263)
T ss_pred             HHHHHccCCCEEEEeccc---CCC---------CCCHHHHHHHHh-ccCCCEEEecCC-CHHHHHHHHHH-cCceEEEEE
Confidence            344677889999999854   343         223566655554 457999888887 89999999985 899999975


Q ss_pred             hhhC
Q 023442          145 AYQN  148 (282)
Q Consensus       145 al~n  148 (282)
                      +=.+
T Consensus       235 lK~~  238 (263)
T COG0434         235 LKKG  238 (263)
T ss_pred             EccC
Confidence            5433

>TIGR02317 prpB methylisocitrate lyase

Probab=91.92  E-value=3.1  Score=38.53  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ..+.+.+.++.|...+++||++.+-.|+-+.   ..+.+.+ +.++++|+..|++--
T Consensus        57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~~tv-~~~~~aG~agi~IED  109 (285)
T TIGR02317        57 TLDEVAEDARRITRVTDLPLLVDADTGFGEA---FNVARTV-REMEDAGAAAVHIED  109 (285)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHH-HHHHHcCCeEEEEec
Confidence            4455667778888888999999999998763   3444433 456799999999964

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=91.90  E-value=3  Score=38.68  Aligned_cols=109  Identities=13%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEe-cCCCC-CC--------CcHHHHHHHHHHHHHhCCCCEEEEecCCc--ccCCCCc
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKC-RIGVD-DH--------DSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISP   90 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKi-R~G~d-~~--------~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~   90 (282)
                      .+.+...++++-.+ ..+++|-.=+ ++|-. +.        .+.++..+|    +++.|+|.|.|.-.|.  .|+|.  
T Consensus       115 eNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~F----v~~TgvD~LAvaiGt~HG~Y~~~--  187 (286)
T PRK08610        115 ENVATTKKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQEL----VEKTGIDALAPALGSVHGPYKGE--  187 (286)
T ss_pred             HHHHHHHHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHH----HHHHCCCEEEeeccccccccCCC--
Confidence            34455555555543 2355654433 22211 11        234444443    4689999999876552  34432  


Q ss_pred             CCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEecHHh
Q 023442           91 AENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        91 ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRga  145 (282)
                            |.++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|+..+
T Consensus       188 ------p~Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l  236 (286)
T PRK08610        188 ------PKLGFKEMEEIGLS-TGLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTEN  236 (286)
T ss_pred             ------CCCCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHH
Confidence                  45679988888765 58999998886655 77777888887777666443

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=91.84  E-value=1.1  Score=39.81  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc---CCCCcCCcCCCCCc
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL---NGISPAENRTIPPL   99 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~---~G~~~ad~~~i~~~   99 (282)
                      ..+.+.++.++.|+-. ++|++|-+---..-    ++=.+ ++..|++.|+|.|.--|.|...   .|..+- -++-.| 
T Consensus       101 ~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l----d~Qv~-LA~~L~~~GaDiIQTEGgtss~p~~~g~lgl-Iekaap-  173 (242)
T PF04481_consen  101 SAEEVLALTRETRSLLPDITLSVTVPHILPL----DQQVQ-LAEDLVKAGADIIQTEGGTSSKPTSPGILGL-IEKAAP-  173 (242)
T ss_pred             cHHHHHHHHHHHHHhCCCCceEEecCccccH----HHHHH-HHHHHHHhCCcEEEcCCCCCCCCCCcchHHH-HHHHhH-
Confidence            4567778888888765 78888866422221    11122 4556789999999988766321   111000 000001 


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .+...+.+-+ ..++||+..-||.+.. +--++..|+.||-||.+.
T Consensus       174 TLAaay~ISr-~v~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSav  217 (242)
T PF04481_consen  174 TLAAAYAISR-AVSIPVLCASGLSAVT-APMAIAAGASGVGVGSAV  217 (242)
T ss_pred             HHHHHHHHHh-ccCCceEeccCcchhh-HHHHHHcCCcccchhHHh
Confidence            1333445555 3689999999986543 444555899999999765

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=91.69  E-value=2.8  Score=39.99  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE-EEecCCcccC-CCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-IIHSRKALLN-GISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~~~~-G~~~ad~~   94 (282)
                      .||..+++.+++    +++.+ +++||.+|.-...    +.+|+...+. .+.+.|...| .+|..++.+. +..     
T Consensus       190 Iga~~~~n~~LL----~~va~-t~kPVllk~G~~~----t~ee~~~A~e-~i~~~Gn~~viL~erG~rtf~s~y~-----  254 (352)
T PRK13396        190 VGARNMQNFSLL----KKVGA-QDKPVLLKRGMAA----TIDEWLMAAE-YILAAGNPNVILCERGIRTFDRQYT-----  254 (352)
T ss_pred             ECcccccCHHHH----HHHHc-cCCeEEEeCCCCC----CHHHHHHHHH-HHHHcCCCeEEEEecCCccCcCCCC-----
Confidence            478889997774    44433 4899999964321    3455554443 4456788544 4565443331 211     


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEc-----cCC-CCHHHHHHHHHcCCCEEEecHH
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLN-----GGI-NTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~n-----GdI-~s~eda~~~l~~g~DgVmIGRg  144 (282)
                       .-.+++..+..+++. .++|||.+     |.= .++.-+..++..||||+||=+-
T Consensus       255 -~~~~dl~ai~~lk~~-~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H  308 (352)
T PRK13396        255 -RNTLDLSVIPVLRSL-THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH  308 (352)
T ss_pred             -CCCcCHHHHHHHHHh-hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence             123457777667554 48999775     321 1333444445589999999753

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=91.68  E-value=1.6  Score=39.66  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      |..|-...-..+.-.++++.+++.+  ++||.+.+..  .   +..+.++ .++.+++.|+|++.+....-.  ..++. 
T Consensus        39 GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~--~---~~~~~i~-~a~~a~~~Gad~v~v~pP~y~--~~~~~-  109 (281)
T cd00408          39 GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA--N---STREAIE-LARHAEEAGADGVLVVPPYYN--KPSQE-  109 (281)
T ss_pred             CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC--c---cHHHHHH-HHHHHHHcCCCEEEECCCcCC--CCCHH-
Confidence            3335445555666667777777665  5888877642  1   2334444 456778999999999875311  11110 


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEE------EccCCCCHHHHHHHHH-cCCCEEE
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi------~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                            --++++.++++. +++||+      ..|--.+++.+.++.+ ..+-|+=
T Consensus       110 ------~~~~~~~~ia~~-~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK  157 (281)
T cd00408         110 ------GIVAHFKAVADA-SDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIK  157 (281)
T ss_pred             ------HHHHHHHHHHhc-CCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEE
Confidence                  115566777765 688986      3577778999988886 4444443

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=91.66  E-value=3.3  Score=37.30  Aligned_cols=109  Identities=13%  Similarity=0.122  Sum_probs=64.6

Q ss_pred             cccccCCHHHHHHHHHHHhhcCCc--cEEEEecCC--CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           18 GVSLMLDPKFVGEAMSVIAANTNV--PVSVKCRIG--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~~i--pvsvKiR~G--~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      |..-+-.++...+.+++++++.+-  ++.|=.|.-  +.....+++.++. ++.+.++|+|.+-+|+.+           
T Consensus       116 ~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~R-a~ay~~AGAD~v~v~~~~-----------  183 (243)
T cd00377         116 GGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIER-AKAYAEAGADGIFVEGLK-----------  183 (243)
T ss_pred             CCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHH-HHHHHHcCCCEEEeCCCC-----------
Confidence            444455677777777777776532  444444521  1111234555554 456789999999999853           


Q ss_pred             CCCCCccHHHHHHHHhcCCCceEEEccCC-CCHHHHHHHHHcCCCEEEecHHh
Q 023442           94 RTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI-~s~eda~~~l~~g~DgVmIGRga  145 (282)
                            ..+.+.++.++ +++||..|--= ...-...++-+.|+.-|.+|-.+
T Consensus       184 ------~~~~~~~~~~~-~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~  229 (243)
T cd00377         184 ------DPEEIRAFAEA-PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLAL  229 (243)
T ss_pred             ------CHHHHHHHHhc-CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHH
Confidence                  14667777775 57888765211 10123444445699999988554

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=91.63  E-value=2.7  Score=38.51  Aligned_cols=56  Identities=7%  Similarity=-0.086  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHHhhcCCcc-EEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           23 LDPKFVGEAMSVIAANTNVP-VSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ip-vsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      -..+.+...+++|...++.| |++.+-  +... .+.++.++.+.++++++|++++.+-+
T Consensus        58 vtl~em~~h~~~V~r~~~~p~vvaD~p--fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd  115 (264)
T PRK00311         58 VTLDDMIYHTKAVARGAPRALVVADMP--FGSYQASPEQALRNAGRLMKEAGAHAVKLEG  115 (264)
T ss_pred             cCHHHHHHHHHHHHhcCCCCcEEEeCC--CCCccCCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence            35567777788888888775 777763  3322 23445556677888889999998876

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=91.62  E-value=3.7  Score=38.11  Aligned_cols=53  Identities=11%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ..+.+.+.++.|...+++||++.+-.|+-+..   ++.+.+ +.++++|+..|.+--
T Consensus        59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~~tV-~~~~~aGvagi~IED  111 (290)
T TIGR02321        59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVHYVV-PQYEAAGASAIVMED  111 (290)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHH-HHHHHcCCeEEEEeC
Confidence            34566777888888999999999999987643   344433 456799999999954

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=91.58  E-value=1.4  Score=39.75  Aligned_cols=84  Identities=12%  Similarity=0.091  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCC-------------CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGV-------------DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~-------------d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      ...+.+++++++ .+||...+-.-+             ...+..+++++. ++.++++|++.|.+++.+           
T Consensus       113 ~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~R-a~ay~~AGAd~i~~e~~~-----------  179 (240)
T cd06556         113 WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIAD-ALAYAPAGADLIVMECVP-----------  179 (240)
T ss_pred             HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHH-HHHHHHcCCCEEEEcCCC-----------
Confidence            344566777665 477775443210             011234555554 567889999999998742           


Q ss_pred             CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           94 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                             .+.+.++.++ +++|+++||.=           .+|||-++-
T Consensus       180 -------~e~~~~i~~~-~~~P~~~~gag-----------~~~dgq~lv  209 (240)
T cd06556         180 -------VELAKQITEA-LAIPLAGIGAG-----------SGTDGQFLV  209 (240)
T ss_pred             -------HHHHHHHHHh-CCCCEEEEecC-----------cCCCceEEe
Confidence                   4555666665 68999988753           278876553

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=91.47  E-value=3.7  Score=38.16  Aligned_cols=53  Identities=13%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ..+.+.+.++.|.+.+++||++.+-.|+-+.   ..+.+.+ +.++++|+..|++--
T Consensus        62 ~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~r~V-~~~~~aGaagi~IED  114 (292)
T PRK11320         62 TLDDVLIDVRRITDACDLPLLVDIDTGFGGA---FNIARTV-KSMIKAGAAAVHIED  114 (292)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHH-HHHHHcCCeEEEEec
Confidence            3456677778888888999999999998643   3444443 566899999999954

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=91.41  E-value=1.5  Score=37.69  Aligned_cols=62  Identities=23%  Similarity=0.268  Sum_probs=48.0

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++.+.+.|++.|.+.-++..               ..+.+..+.+.+++ ..++.|.|.+.+++..+++.|+|+|+.+
T Consensus        22 ~~~l~~~G~~~vev~~~~~~---------------~~~~i~~l~~~~~~-~~iGag~v~~~~~~~~a~~~Ga~~i~~p   83 (190)
T cd00452          22 AEALIEGGIRAIEITLRTPG---------------ALEAIRALRKEFPE-ALIGAGTVLTPEQADAAIAAGAQFIVSP   83 (190)
T ss_pred             HHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcCCCEEEcC
Confidence            45567899999999876421               14556677666654 3578999999999999999999999976

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=91.36  E-value=0.44  Score=43.75  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      +++|+++.||| |++.+.++.++|+|+|++|.-
T Consensus       229 ~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai  260 (272)
T cd01573         229 PPVLLAAAGGI-NIENAAAYAAAGADILVTSAP  260 (272)
T ss_pred             CCceEEEECCC-CHHHHHHHHHcCCcEEEEChh
Confidence            57999999999 999999999999999977754

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=91.28  E-value=3.4  Score=36.02  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCC-CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G-~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.+.++++.+++. +.++.+=+-+. +...+.+.+.+..+.++..+.|.+...+.. +                 ..+.+
T Consensus        93 ~~l~~~i~~~~~~-g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~-----------------~~~~i  153 (215)
T PRK13813         93 DSLKAVVEAAAES-GGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA-T-----------------RPERV  153 (215)
T ss_pred             HHHHHHHHHHHhc-CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC-C-----------------cchhH
Confidence            4456667776653 55553322221 211122233344556666777776554222 0                 02223


Q ss_pred             HHHHhcCC-CceEEEccCCCCH-HHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDFP-DLTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~~-~ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++.+... ++.+ ..|||..- ..+.++++.|+|++.+||+++..+.
T Consensus       154 ~~l~~~~~~~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d  200 (215)
T PRK13813        154 RYIRSRLGDELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAAD  200 (215)
T ss_pred             HHHHHhcCCCcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCC
Confidence            33333222 2333 66888753 2477777899999999999876665

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=91.20  E-value=4.8  Score=37.26  Aligned_cols=108  Identities=9%  Similarity=0.036  Sum_probs=60.6

Q ss_pred             ccCCHHHHHHHHHHHhhc-C--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           21 LMLDPKFVGEAMSVIAAN-T--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~-~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      .+-.++...+.|++++++ .  +++|.+.+=.-+.. ..+++.++. ++...++|+|.|.+++...     +        
T Consensus       130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~-~~~~eAi~R-a~ay~eAGAD~ifv~~~~~-----~--------  194 (285)
T TIGR02320       130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILG-KGMEDALKR-AEAYAEAGADGIMIHSRKK-----D--------  194 (285)
T ss_pred             cccCHHHHHHHHHHHHHhccCCCeEEEEeccccccc-CCHHHHHHH-HHHHHHcCCCEEEecCCCC-----C--------
Confidence            344566666666777665 3  34555542111111 135565654 5677899999999995211     0        


Q ss_pred             CccHHHHHHHHhc----CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           98 PLKYEYYYALLRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        98 ~~~~~~i~~l~~~----~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                         .+.+.++.+.    +|++|++.+.+-+-.-.+.++.+.|+.-|..|-.++
T Consensus       195 ---~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~  244 (285)
T TIGR02320       195 ---PDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLL  244 (285)
T ss_pred             ---HHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHH
Confidence               2233333333    346788876532222245666668999999985554

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=91.17  E-value=0.87  Score=40.63  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             HHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          127 EVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       127 da~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ...++++.|+|+|++||++...+.-
T Consensus       192 ~~~~ai~~Gad~iVvGR~I~~a~dP  216 (230)
T PRK00230        192 TPAQAIAAGSDYIVVGRPITQAADP  216 (230)
T ss_pred             CHHHHHHcCCCEEEECCcccCCCCH
Confidence            4566667899999999998877663

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=91.11  E-value=3.1  Score=39.28  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEE-EecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSV-KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsv-KiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+.+--..+.+...+++|+..+..|++| .+-.|... .+.++.++.+.++++++|++++-+-+.+..           
T Consensus        72 ~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~-~s~e~av~nA~rl~~eaGa~aVKlEGg~~~-----------  139 (332)
T PLN02424         72 HDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYE-SSTDQAVESAVRMLKEGGMDAVKLEGGSPS-----------  139 (332)
T ss_pred             CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHHHhCCcEEEECCCcHH-----------
Confidence            34555556778888889999988899988 77666222 234566666777778899999998874210           


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-----------EccCC----CCHHHH-------HHHHHcCCCEEEe
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-----------LNGGI----NTVDEV-------NAALRKGAHHVMV  141 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-----------~nGdI----~s~eda-------~~~l~~g~DgVmI  141 (282)
                          ..+.++.+.+  ..|||+           .-||-    .+.+.+       +.+.+.||++|.+
T Consensus       140 ----~~~~I~~l~~--~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL  201 (332)
T PLN02424        140 ----RVTAAKAIVE--AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL  201 (332)
T ss_pred             ----HHHHHHHHHH--cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence                1345666664  378998           23551    244433       3333479999876

>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid

Probab=91.02  E-value=3.4  Score=39.10  Aligned_cols=43  Identities=16%  Similarity=0.066  Sum_probs=33.4

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +-+++..+++.+. .++||.+...+.+++++.++++ ..+|.|.+
T Consensus       223 ~~d~~~~~~l~~~-~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~  266 (355)
T cd03321         223 QHDYEGHARIASA-LRTPVQMGENWLGPEEMFKALSAGACDLVMP  266 (355)
T ss_pred             CcCHHHHHHHHHh-cCCCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence            3356666677664 5899999888999999999998 66787654

MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=90.92  E-value=0.31  Score=42.50  Aligned_cols=36  Identities=31%  Similarity=0.613  Sum_probs=31.0

Q ss_pred             eEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          115 TFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       115 pVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +|..-|||+. +++.++++.|+|+|.+|++++.+|..
T Consensus       172 ~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~  207 (220)
T PRK05581        172 LIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDY  207 (220)
T ss_pred             eEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCH
Confidence            3557899976 89999998999999999999987774

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=90.67  E-value=12  Score=38.36  Aligned_cols=192  Identities=14%  Similarity=0.180  Sum_probs=94.3

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.+.+...++.+++. +..+.+-+..-.....+.+.+.+ +++.++++|++.|.+---.+   ...|       .--+
T Consensus       120 lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~-~a~~l~~~Gad~i~i~Dt~G---~l~P-------~~~~  187 (593)
T PRK14040        120 MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVD-LAKQLEDMGVDSLCIKDMAG---LLKP-------YAAY  187 (593)
T ss_pred             CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHH-HHHHHHHcCCCEEEECCCCC---CcCH-------HHHH
Confidence            56677777778887764 43332222210111123344444 45567789999888864221   1111       1124


Q ss_pred             HHHHHHHhcCCCceEEEcc----CCCCHHHHHHHHHcCCCEEE-----ecHHhhhCCccchhhhHhhhh--CCCCCcccH
Q 023442          102 EYYYALLRDFPDLTFTLNG----GINTVDEVNAALRKGAHHVM-----VGRAAYQNPWYTLGHVDTAIY--GAPSSGLTR  170 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nG----dI~s~eda~~~l~~g~DgVm-----IGRgal~nP~if~~~~~~~~~--g~~~~~~~~  170 (282)
                      +.+.++++.. ++||-.-+    |. ...-...+++.|||.|=     +|++ -+||.+  ..+-..+.  |... ..+.
T Consensus       188 ~lv~~lk~~~-~~pi~~H~Hnt~Gl-A~An~laAieAGa~~vD~ai~glG~~-~Gn~~l--e~vv~~L~~~~~~~-gidl  261 (593)
T PRK14040        188 ELVSRIKKRV-DVPLHLHCHATTGL-STATLLKAIEAGIDGVDTAISSMSMT-YGHSAT--ETLVATLEGTERDT-GLDI  261 (593)
T ss_pred             HHHHHHHHhc-CCeEEEEECCCCch-HHHHHHHHHHcCCCEEEecccccccc-ccchhH--HHHHHHHHhcCCCc-CCCH
Confidence            5566776654 68875422    22 23334445557888663     4444 378876  23222121  2111 1232


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHhhHHHHHHHHHH
Q 023442          171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN--GLFKRKADAAFQTCKTVKSFLEE  235 (282)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~  235 (282)
                       +.+..+-+|+..+...|..-++.....  .---|.+.+||.  +.+..++.+. .-...+.+.+++
T Consensus       262 -~~l~~is~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~PGG~~Snl~~ql~~~-g~~~~~~evl~e  324 (593)
T PRK14040        262 -LKLEEIAAYFREVRKKYAKFEGQLKGV--DSRILVAQVPGGMLTNMESQLKEQ-GAADKLDEVLAE  324 (593)
T ss_pred             -HHHHHHHHHHHHHHHHhccCCcccccC--cccEEEEcCCCchHHHHHHHHHHC-CCHHHHHHHHHH
Confidence             445555566666666664311111100  011267778887  6676666432 223344444443

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=90.57  E-value=5.9  Score=36.66  Aligned_cols=71  Identities=18%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             HHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEecH
Q 023442           67 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+++.|+|+|.|.-.|.  .|.+.        |.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+.
T Consensus       163 Fv~~TgvD~LAvaiGt~HG~y~~~--------p~Ld~~~L~~I~~~-~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T  233 (284)
T PRK12737        163 FVERTGIDSLAVAIGTAHGLYKGE--------PKLDFERLAEIREK-VSIPLVLHGASGVPDEDVKKAISLGICKVNVAT  233 (284)
T ss_pred             HHHHhCCCEEeeccCccccccCCC--------CcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence            34679999999875552  34331        45679988888664 589999877644 45667778888988888887


Q ss_pred             Hhh
Q 023442          144 AAY  146 (282)
Q Consensus       144 gal  146 (282)
                      .+.
T Consensus       234 ~l~  236 (284)
T PRK12737        234 ELK  236 (284)
T ss_pred             HHH
Confidence            653

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=90.51  E-value=4.5  Score=38.43  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=51.0

Q ss_pred             HHHHHHHHH--hCCCCEEEEecCC--cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-EccCCCCHHHHHHHHH--
Q 023442           61 CDFIYKVSS--LSPTRHFIIHSRK--ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEVNAALR--  133 (282)
Q Consensus        61 ~~~v~~~le--~~Gv~~i~VH~Rt--~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi-~nGdI~s~eda~~~l~--  133 (282)
                      +....+++.  +.|+|.+-+---.  ....|......-+-..-..+.+.++.+. ..+|+| ++|++ |.+++.+.++  
T Consensus       186 V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a-~~~P~vvlsgG~-~~~~f~~~l~~A  263 (340)
T PRK12858        186 VIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDA-TDLPFIFLSAGV-SPELFRRTLEFA  263 (340)
T ss_pred             HHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhh-CCCCEEEECCCC-CHHHHHHHHHHH
Confidence            334566676  4999988774211  1112221000000000012345566554 467865 58887 7777777765  


Q ss_pred             --cCC--CEEEecHHhhhCCcc
Q 023442          134 --KGA--HHVMVGRAAYQNPWY  151 (282)
Q Consensus       134 --~g~--DgVmIGRgal~nP~i  151 (282)
                        .|+  .||.+||....++--
T Consensus       264 ~~aGa~f~Gvl~GRniwq~~v~  285 (340)
T PRK12858        264 CEAGADFSGVLCGRATWQDGIE  285 (340)
T ss_pred             HHcCCCccchhhhHHHHhhhhc
Confidence              789  999999999777643

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=90.48  E-value=0.76  Score=41.95  Aligned_cols=43  Identities=26%  Similarity=0.410  Sum_probs=33.6

Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.++ ++..++||...=||.|+++++++. .++|||.||.+++.
T Consensus       189 ~i~~i-k~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~  231 (259)
T PF00290_consen  189 FIKRI-KKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK  231 (259)
T ss_dssp             HHHHH-HHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred             HHHHH-HhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence            34444 445699999999999999999999 79999999988743

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4

Probab=90.48  E-value=3  Score=39.61  Aligned_cols=41  Identities=7%  Similarity=-0.008  Sum_probs=31.9

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHH-cCCCEEEe
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~-~g~DgVmI  141 (282)
                      +++..+++.+. .++||.+...+.+ +++++++++ ..+|.|.+
T Consensus       228 d~~~~~~l~~~-~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~  270 (368)
T cd03329         228 SISSYRWLAEK-LDIPILGTEHSRGALESRADWVLAGATDFLRA  270 (368)
T ss_pred             hHHHHHHHHhc-CCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence            45556666554 6899988888999 999999998 66887765

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=90.38  E-value=5.7  Score=36.72  Aligned_cols=72  Identities=15%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+++.|+|+|.|.-.|.  .|++.        |.++|+.+.++.+. .++|++.-|+=. +.++++++++.|+.=|=|+
T Consensus       160 ~Fv~~TgvD~LAvaiGt~HG~yk~~--------p~Ldf~~L~~I~~~-~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  230 (282)
T TIGR01858       160 EFVEATGVDSLAVAIGTAHGLYKKT--------PKLDFDRLAEIREV-VDVPLVLHGASDVPDEDVRRTIELGICKVNVA  230 (282)
T ss_pred             HHHHHHCcCEEecccCccccCcCCC--------CccCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence            345689999999876552  34431        46789999888765 589999887755 4566777777888878777


Q ss_pred             HHhh
Q 023442          143 RAAY  146 (282)
Q Consensus       143 Rgal  146 (282)
                      ..+.
T Consensus       231 T~l~  234 (282)
T TIGR01858       231 TELK  234 (282)
T ss_pred             cHHH
Confidence            6553

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.37  E-value=5.7  Score=36.71  Aligned_cols=62  Identities=13%  Similarity=0.073  Sum_probs=43.0

Q ss_pred             hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++|+|.|-+-.-+                  .+.+++.++.. ...|+.++||| |.+.+.++.++|+|.+.+|.--..-
T Consensus       212 ~~gaDiI~LDn~s------------------~e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galthsa  272 (281)
T PRK06106        212 ELGVDAVLLDNMT------------------PDTLREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLTHSA  272 (281)
T ss_pred             HcCCCEEEeCCCC------------------HHHHHHHHHHhCCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence            7899999765422                  12233332211 35789999999 8999999999999999999643324


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      |+
T Consensus       273 ~~  274 (281)
T PRK06106        273 PV  274 (281)
T ss_pred             Cc
Confidence            44

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=90.35  E-value=3.5  Score=36.17  Aligned_cols=107  Identities=11%  Similarity=0.117  Sum_probs=59.6

Q ss_pred             ccccc--CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCc-HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           18 GVSLM--LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        18 Gs~Ll--~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~-~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      |...+  ..++.    ++.+++.+++|+..-.|.++++.+- +....+++ +.+.++|++.|.+-.+....    |.+ .
T Consensus        40 G~~~~~~~~~~~----~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~-~~a~~aGad~I~~~~~~~~~----p~~-~  109 (219)
T cd04729          40 GAVGIRANGVED----IRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEV-DALAAAGADIIALDATDRPR----PDG-E  109 (219)
T ss_pred             CCeEEEcCCHHH----HHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHH-HHHHHcCCCEEEEeCCCCCC----CCC-c
Confidence            44444  55543    4555555788986545545532110 00001122 34568999988886532110    100 0


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                          ...+.+.++.+.. ++|++.  ++.|++++..+.+.|+|.+.+
T Consensus       110 ----~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G~d~i~~  149 (219)
T cd04729         110 ----TLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLGFDIIGT  149 (219)
T ss_pred             ----CHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcCCCEEEc
Confidence                0134444555544 577766  688999998888899999865

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK14567 triosephosphate isomerase; Provisional

Probab=90.30  E-value=0.36  Score=43.91  Aligned_cols=40  Identities=10%  Similarity=0.194  Sum_probs=34.8

Q ss_pred             CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442          112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      .+++|++.|.| +++++.++++ ..+||+.||++.+ +|.-|.
T Consensus       201 ~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~  241 (253)
T PRK14567        201 KNIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFN  241 (253)
T ss_pred             ccceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHH
Confidence            36899999999 9999999999 7799999999887 665553

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=90.14  E-value=5  Score=36.16  Aligned_cols=54  Identities=6%  Similarity=-0.062  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           24 DPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ..+.+...+++|++.+. .||++.+=.|+...  .++..+.+.+ +.++|++.|.+-+
T Consensus        56 tl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~~-l~~aGa~gv~iED  110 (240)
T cd06556          56 PVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAKT-FMRAGAAGVKIEG  110 (240)
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHHH-HHHcCCcEEEEcC
Confidence            45677788888888775 79999998887652  2344554444 4569999999876

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=90.09  E-value=4.8  Score=37.37  Aligned_cols=64  Identities=8%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|+|.|-+---+                  -+.+++.++.. .++.+.++||| |.+.+.++..+|+|.+.+|.--..
T Consensus       214 ~~agaDiImLDnms------------------pe~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galths  274 (290)
T PRK06559        214 AAAGADIIMLDNMS------------------LEQIEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTHS  274 (290)
T ss_pred             HHcCCCEEEECCCC------------------HHHHHHHHHHhcCceEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence            37899999765422                  12233333211 26789999999 899999999999999999964433


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      -|++
T Consensus       275 a~~~  278 (290)
T PRK06559        275 AKSL  278 (290)
T ss_pred             Cccc
Confidence            4543

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=89.87  E-value=2.7  Score=37.15  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +..+...||| +++.+....+.|+|.+++||++...+.
T Consensus       163 ~~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~d  199 (216)
T PRK13306        163 GFKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAAD  199 (216)
T ss_pred             CCeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCC
Confidence            3447888999 455555544478999999998766655

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.62  E-value=5.6  Score=37.00  Aligned_cols=64  Identities=13%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|+|.|-+-.-+                  -+.+++.++.. .++.+.++||| |.+.+.++.++|+|.+.+|.--..
T Consensus       222 ~~aGaDiImLDnms------------------pe~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galths  282 (294)
T PRK06978        222 LAHGAQSVLLDNFT------------------LDMMREAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALTKD  282 (294)
T ss_pred             HHcCCCEEEECCCC------------------HHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence            37999999775432                  12233333221 25789999999 899999999999999999976555


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      -||+
T Consensus       283 a~~l  286 (294)
T PRK06978        283 VRAT  286 (294)
T ss_pred             Cccc
Confidence            5664

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=89.59  E-value=1.1  Score=42.36  Aligned_cols=76  Identities=13%  Similarity=0.048  Sum_probs=60.2

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..++.|+++|.|-.-..+++|.            ++++.++.+..+++||.--==|.++-++.+....|||+|.+==
T Consensus       144 iA~~Ye~~GA~aISVLTd~~~F~Gs------------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIa  211 (338)
T PLN02460        144 IAQAYEKGGAACLSVLTDEKYFQGS------------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIA  211 (338)
T ss_pred             HHHHHHhCCCcEEEEecCcCcCCCC------------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHH
Confidence            5667889999999998876677775            6777666554368999887779999999999999999998776


Q ss_pred             HhhhCCcc
Q 023442          144 AAYQNPWY  151 (282)
Q Consensus       144 gal~nP~i  151 (282)
                      ++|.+-.+
T Consensus       212 aiL~~~~L  219 (338)
T PLN02460        212 AVLPDLDI  219 (338)
T ss_pred             HhCCHHHH
Confidence            77765454

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=89.57  E-value=12  Score=34.20  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=69.6

Q ss_pred             cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ..|=+..+|+ -| |.+.+--..+.+....++|+... +..+.+.+-.|... .+.++.++...++++++|+|++-+-|.
T Consensus        41 LVGDSlgmv~-~G-~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~-~s~e~av~nA~rl~ke~GadaVKlEGg  117 (261)
T PF02548_consen   41 LVGDSLGMVV-LG-YDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQ-ASPEQAVRNAGRLMKEAGADAVKLEGG  117 (261)
T ss_dssp             EE-TTHHHHT-T---SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSST-SSHHHHHHHHHHHHHTTT-SEEEEEBS
T ss_pred             EeCCcHHHhe-eC-CCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccccc-CCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence            3444555555 34 47777778888888899998876 44566666655442 234555666778888899999999874


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEc-----------cCCC----CHHHHHHHHH-------cCCCEE
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN-----------GGIN----TVDEVNAALR-------KGAHHV  139 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~n-----------GdI~----s~eda~~~l~-------~g~DgV  139 (282)
                      ...                .+.++.+.+.  .|||++-           ||-.    |.+++.++++       .||-++
T Consensus       118 ~~~----------------~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~i  179 (261)
T PF02548_consen  118 AEI----------------AETIKALVDA--GIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAI  179 (261)
T ss_dssp             GGG----------------HHHHHHHHHT--T--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEE
T ss_pred             hhH----------------HHHHHHHHHC--CCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEE
Confidence            311                3556677763  8999874           3332    6677766653       588877


Q ss_pred             Ee
Q 023442          140 MV  141 (282)
Q Consensus       140 mI  141 (282)
                      .+
T Consensus       180 vl  181 (261)
T PF02548_consen  180 VL  181 (261)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=89.42  E-value=5.8  Score=36.90  Aligned_cols=52  Identities=12%  Similarity=0.034  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      .+.+.+.++.|...+++||++.+-.|+-+..+   +.+. .+.++++|+..|++--
T Consensus        62 ~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~---v~r~-V~~~~~aGaagi~IED  113 (294)
T TIGR02319        62 VSEQAINAKNIVLAVDVPVIMDADAGYGNAMS---VWRA-TREFERVGIVGYHLED  113 (294)
T ss_pred             HHHHHHHHHHHHhccCCCEEEECCCCCCCcHH---HHHH-HHHHHHcCCeEEEEEC
Confidence            34566777888888899999999999876433   3343 3566899999999954

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=89.38  E-value=7.1  Score=36.22  Aligned_cols=72  Identities=18%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEe
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMV  141 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~-~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmI  141 (282)
                      +.+++.|+|.|.|.-.|.  .|++.        |. ++|+.+.++.+. .++|++.-|+=-.+ ++++++++.|+-=|=|
T Consensus       165 ~Fv~~TgvD~LAvaiGt~HG~y~~~--------p~~Ld~~~L~~I~~~-v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi  235 (288)
T TIGR00167       165 EFVKLTGVDSLAAAIGNVHGVYKGE--------PKGLDFERLEEIQKY-VNLPLVLHGGSGIPDEEIKKAISLGVVKVNI  235 (288)
T ss_pred             HHHhccCCcEEeeccCccccccCCC--------CCccCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEc
Confidence            345689999999976553  33321        23 679988888765 58999998887655 6788888888888877


Q ss_pred             cHHhh
Q 023442          142 GRAAY  146 (282)
Q Consensus       142 GRgal  146 (282)
                      +..+.
T Consensus       236 ~T~l~  240 (288)
T TIGR00167       236 DTELQ  240 (288)
T ss_pred             ChHHH
Confidence            76653

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=89.26  E-value=5.9  Score=36.93  Aligned_cols=64  Identities=9%  Similarity=0.120  Sum_probs=44.1

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++|+|.|-+---+                  .+.+++.++. ..++.+.++||| |.+.+.++.++|+|.+.+|.---.
T Consensus       225 ~~~gaDiI~LDn~s------------------~e~~~~av~~~~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galths  285 (296)
T PRK09016        225 LKAGADIIMLDNFT------------------TEQMREAVKRTNGRALLEVSGNV-TLETLREFAETGVDFISVGALTKH  285 (296)
T ss_pred             HHcCCCEEEeCCCC------------------hHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccC
Confidence            36899988765422                  1223333332 136889999999 899999999999999999964444


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      -||+
T Consensus       286 a~~l  289 (296)
T PRK09016        286 VQAL  289 (296)
T ss_pred             CCcc
Confidence            4443

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=89.25  E-value=3.5  Score=38.12  Aligned_cols=51  Identities=14%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      .+.+.+.++.|..++++||+|.+=.|+-+.   ...++.+ +.++++|+..+++-
T Consensus        63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~---~nvartV-~~~~~aG~agi~iE  113 (289)
T COG2513          63 LDEVLADARRITDAVDLPVLVDIDTGFGEA---LNVARTV-RELEQAGAAGIHIE  113 (289)
T ss_pred             HHHHHHHHHHHHhhcCCceEEeccCCCCcH---HHHHHHH-HHHHHcCcceeeee
Confidence            566778888888999999999999998763   3344443 45689999999885

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=89.22  E-value=8.2  Score=35.72  Aligned_cols=71  Identities=13%  Similarity=0.250  Sum_probs=51.7

Q ss_pred             HHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEecH
Q 023442           67 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+++.|+|+|.|.-.|.  .|.+.        |.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+.
T Consensus       163 Fv~~TgvD~LAvaiGt~HG~y~~~--------p~Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T  233 (284)
T PRK09195        163 FVEATGIDSLAVAIGTAHGMYKGE--------PKLDFDRLENIRQW-VNIPLVLHGASGLPTKDIQQTIKLGICKVNVAT  233 (284)
T ss_pred             HHHHHCcCEEeeccCccccccCCC--------CcCCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence            34688999999875552  34431        45679988888765 589999877644 45777788888988888887


Q ss_pred             Hhh
Q 023442          144 AAY  146 (282)
Q Consensus       144 gal  146 (282)
                      .+.
T Consensus       234 ~l~  236 (284)
T PRK09195        234 ELK  236 (284)
T ss_pred             HHH
Confidence            765

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=89.19  E-value=0.83  Score=43.71  Aligned_cols=43  Identities=16%  Similarity=0.289  Sum_probs=35.8

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.|+.+..+.+.. +.|||.-| |.|++|++++.+.|||+|.++
T Consensus       222 ~~~w~~i~~ir~~~-~~pviiKg-V~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         222 SFNWQDLRWLRDLW-PHKLLVKG-IVTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             cCCHHHHHHHHHhC-CCCEEEec-CCCHHHHHHHHHCCcCEEEEC
Confidence            35688888887754 67888876 999999999999999999874

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR02317 prpB methylisocitrate lyase

Probab=89.16  E-value=8.4  Score=35.68  Aligned_cols=106  Identities=7%  Similarity=0.070  Sum_probs=60.5

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +-.++...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|-+|+-+.                 
T Consensus       124 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R-a~ay~~AGAD~vfi~g~~~-----------------  185 (285)
T TIGR02317       124 LVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIER-AKAYVEAGADMIFPEALTS-----------------  185 (285)
T ss_pred             ccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHH-HHHHHHcCCCEEEeCCCCC-----------------
Confidence            334554455556666543 445666556421111235555555 4566789999999987321                 


Q ss_pred             HHHHHHHHhcCCCceEE---EccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFPDLTFT---LNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi---~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+.++.++. +.|+.   .+|+-.-.-+++++.+.|+.-|..|-.++
T Consensus       186 ~e~i~~~~~~i-~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~  233 (285)
T TIGR02317       186 LEEFRQFAKAV-KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAF  233 (285)
T ss_pred             HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHH
Confidence            34556676654 46773   33332111245555567999999995553

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK08005 epimerase; Validated

Probab=89.14  E-value=8.2  Score=34.13  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++-++++.+...+..|-.-||| +.+.+.++.+.|+|.+.+|+++.+++.
T Consensus       151 ~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d  199 (210)
T PRK08005        151 CEKVSQSREHFPAAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTAN  199 (210)
T ss_pred             HHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCC
Confidence            4455555443334468899999 689999999999999999999876655

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=89.05  E-value=4.4  Score=37.12  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=60.2

Q ss_pred             ccccCCHHHHHHHHHHHhhc-------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           19 VSLMLDPKFVGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        19 s~Ll~~p~~~~eiv~~v~~~-------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      +.+--..+.+...+++|++.       +++|++     ++.+   .++.++.+.++++++|++++.+-+....       
T Consensus        54 ~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~-----sy~~---~e~a~~na~rl~~eaGa~aVkiEgg~~~-------  118 (263)
T TIGR00222        54 STLPVTVADMIYHTAAVKRGAPNCLIVTDLPFM-----SYAT---PEQALKNAARVMQETGANAVKLEGGEWL-------  118 (263)
T ss_pred             CCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcC-----CCCC---HHHHHHHHHHHHHHhCCeEEEEcCcHhH-------
Confidence            33444567778888888887       455555     3432   4555666778888899999998873210       


Q ss_pred             CcCCCCCccHHHHHHHHhcCCCceEE---------Ec--cCC----CCHHHHHHHH-------HcCCCEEEe
Q 023442           92 ENRTIPPLKYEYYYALLRDFPDLTFT---------LN--GGI----NTVDEVNAAL-------RKGAHHVMV  141 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~~~~ipVi---------~n--GdI----~s~eda~~~l-------~~g~DgVmI  141 (282)
                               -+.+..+.+  ..|||+         ++  ||.    .|.+++.+++       +.||+++.+
T Consensus       119 ---------~~~i~~l~~--~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl  179 (263)
T TIGR00222       119 ---------VETVQMLTE--RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL  179 (263)
T ss_pred             ---------HHHHHHHHH--CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence                     233444444  378888         33  544    2455444443       379999876

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=88.96  E-value=6.6  Score=33.85  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=56.0

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR  109 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~  109 (282)
                      ++++.+.+.   ++..=+|.-     +.++..+. ++.+-+.|+..|.+.-++..               ..+.+..+.+
T Consensus         4 ~~~~~l~~~---~~~~v~r~~-----~~~~~~~~-~~~~~~~Gv~~vqlr~k~~~---------------~~e~~~~~~~   59 (187)
T PRK07455          4 DWLAQLQQH---RAIAVIRAP-----DLELGLQM-AEAVAAGGMRLIEITWNSDQ---------------PAELISQLRE   59 (187)
T ss_pred             HHHHHHHhC---CEEEEEEcC-----CHHHHHHH-HHHHHHCCCCEEEEeCCCCC---------------HHHHHHHHHH
Confidence            455555543   344436642     22333443 34455899999999876531               0233434433


Q ss_pred             cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442          110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus       110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .. ..-.++.|-+.+.+++..+++.|+|+|++|-
T Consensus        60 ~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~   92 (187)
T PRK07455         60 KL-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH   92 (187)
T ss_pred             hC-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence            33 3445788999999999999999999998873

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=88.89  E-value=20  Score=36.62  Aligned_cols=192  Identities=15%  Similarity=0.154  Sum_probs=93.4

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.+.+...++.+++. +.-+.+=+-.......+.+..++. ++.+.++|++.|.+---.+   ...|.+       -.
T Consensus       119 lnd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~-a~~l~~~Gad~I~i~Dt~G---~~~P~~-------~~  186 (592)
T PRK09282        119 LNDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVEL-AKELEEMGCDSICIKDMAG---LLTPYA-------AY  186 (592)
T ss_pred             cChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHH-HHHHHHcCCCEEEECCcCC---CcCHHH-------HH
Confidence            45677777777777654 433432221111111234444443 4556789999998864221   111211       24


Q ss_pred             HHHHHHHhcCCCceEEE----ccCCCCHHHHHHHHHcCCCEEE-----ecHHhhhCCccchhhhHhhh--hCCCCCcccH
Q 023442          102 EYYYALLRDFPDLTFTL----NGGINTVDEVNAALRKGAHHVM-----VGRAAYQNPWYTLGHVDTAI--YGAPSSGLTR  170 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~----nGdI~s~eda~~~l~~g~DgVm-----IGRgal~nP~if~~~~~~~~--~g~~~~~~~~  170 (282)
                      +.+.++++.+ ++||-.    +-|. ...-...+++.|||.|=     +|+++ +||.+  ..+-..+  .|.. ...+.
T Consensus       187 ~lv~~lk~~~-~~pi~~H~Hnt~Gl-a~An~laAv~aGad~vD~ai~g~g~~a-gn~~~--e~vv~~L~~~g~~-~~idl  260 (592)
T PRK09282        187 ELVKALKEEV-DLPVQLHSHCTSGL-APMTYLKAVEAGVDIIDTAISPLAFGT-SQPPT--ESMVAALKGTPYD-TGLDL  260 (592)
T ss_pred             HHHHHHHHhC-CCeEEEEEcCCCCc-HHHHHHHHHHhCCCEEEeeccccCCCc-CCHhH--HHHHHHHHhCCCC-CccCH
Confidence            5566666654 577754    3343 44455556667888662     45554 58876  2322212  2221 12232


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCC--hHHHHHHHHHHhhHHHHHHHHHH
Q 023442          171 RQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGN--GLFKRKADAAFQTCKTVKSFLEE  235 (282)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~--~~~r~~l~~~~~~~~~~~~~~~~  235 (282)
                       +.+..+-+|...+...|..-++.......  --|.+.+||.  +.+..++.+. .-...+.+.+++
T Consensus       261 -~~l~~~s~~~~~~~~~y~~~~~~~~~~~~--~v~~~~~pGg~~snl~~q~~~~-g~~d~~~~vl~e  323 (592)
T PRK09282        261 -ELLFEIAEYFREVRKKYKQFESEFTIVDT--RVLIHQVPGGMISNLVSQLKEQ-NALDKLDEVLEE  323 (592)
T ss_pred             -HHHHHHHHHHHHHHHHhhcCCCccccCCc--cEEEEcCCCcHHHHHHHHHHHC-CcHHHHHHHHHH
Confidence             34445555555555556321111111111  1257778888  6676666332 222344444443

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=88.56  E-value=0.96  Score=43.63  Aligned_cols=44  Identities=32%  Similarity=0.422  Sum_probs=36.8

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.|+.+..+++. .++|||.- +|.|.+|++.+.+.|||+|.+.
T Consensus       238 ~~~tW~~i~~lr~~-~~~pvivK-gV~~~~dA~~a~~~G~d~I~vs  281 (383)
T cd03332         238 PSLTWEDLAFLREW-TDLPIVLK-GILHPDDARRAVEAGVDGVVVS  281 (383)
T ss_pred             CCCCHHHHHHHHHh-cCCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence            34679998888775 47898766 6799999999999999999975

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=88.55  E-value=1.8  Score=41.41  Aligned_cols=71  Identities=13%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhh---hhCCCCCcccHHHHHHHHHHHHHHHHHhc
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTA---IYGAPSSGLTRRQVVEKYQIYGDAILGTY  188 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (282)
                      +++|++.|+| +++.+.+++. .++||+.+|++.+ +|.-|..-+...   ..|...     .-++..|.+.+..+++..
T Consensus       213 ~v~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~asl-~~~~f~~Ii~~~~~~~~~~~~-----~~~~~~~~~~a~~ii~~l  285 (355)
T PRK14905        213 KIPVLYGGSV-NLENANELIMKPHIDGLFIGRSAW-DAQCFHALIADALKALAGSKI-----DPIIHKFSEIAIQLIDHL  285 (355)
T ss_pred             ceeEEEeCcC-CHHHHHHHhcCCCCCEEEechhhc-cHHHHHHHHHHHHHhccCCcc-----cHHHHhHHHHHHHHHHHh
Confidence            5899999999 5555556665 8999999999998 665554333322   223211     123444555555566666


Q ss_pred             CC
Q 023442          189 GN  190 (282)
Q Consensus       189 g~  190 (282)
                      |.
T Consensus       286 GG  287 (355)
T PRK14905        286 GG  287 (355)
T ss_pred             CC
Confidence            53

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=88.45  E-value=6.7  Score=37.92  Aligned_cols=105  Identities=6%  Similarity=-0.009  Sum_probs=58.6

Q ss_pred             HHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-----cCCcccCCCCcCCcCCCCCccHH
Q 023442           29 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-----SRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        29 ~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-----~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+-+..+++.. ++||.+=+--+.+    .++..+ +++.++++|+|+|.+-     +..-.-.|..   ..+    +.+
T Consensus       101 l~~i~~~k~~~~~~pvIaSi~~~~s----~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~---~gq----~~e  168 (385)
T PLN02495        101 LAEFKQLKEEYPDRILIASIMEEYN----KDAWEE-IIERVEETGVDALEINFSCPHGMPERKMGAA---VGQ----DCD  168 (385)
T ss_pred             HHHHHHHHhhCCCCcEEEEccCCCC----HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCccchh---hcc----CHH
Confidence            33355666655 6798886532222    233333 3456788999999973     2110001110   000    123


Q ss_pred             HHHHH---HhcCCCceEE--EccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442          103 YYYAL---LRDFPDLTFT--LNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus       103 ~i~~l---~~~~~~ipVi--~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .+.++   +++..++||+  ..-++.+..++.+... .|+|||.+-=.+
T Consensus       169 ~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~  217 (385)
T PLN02495        169 LLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTI  217 (385)
T ss_pred             HHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence            33333   2334578987  4778888888888665 999999775433

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=88.43  E-value=0.45  Score=40.94  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=27.0

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .++|||+.|=|.|.+|+.++++.|+++|.-..--|
T Consensus       139 ~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~L  173 (175)
T PF04309_consen  139 TNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKEL  173 (175)
T ss_dssp             CSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHH
T ss_pred             cCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHh
Confidence            47999999999999999999999999999875443

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=88.41  E-value=8.2  Score=35.70  Aligned_cols=63  Identities=10%  Similarity=0.085  Sum_probs=43.2

Q ss_pred             hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++|+|.|-+---+                  .+.+.+.++.. ....+.++||| |.+.+.++..+|+|.+.+|.--..-
T Consensus       211 ~~gaDiImLDn~s------------------~e~l~~av~~~~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galths~  271 (281)
T PRK06543        211 AAGVDTIMLDNFS------------------LDDLREGVELVDGRAIVEASGNV-NLNTVGAIASTGVDVISVGALTHSV  271 (281)
T ss_pred             hcCCCEEEECCCC------------------HHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence            6899998765422                  12222332211 24578999999 8999999999999999999644444


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      |++
T Consensus       272 ~~~  274 (281)
T PRK06543        272 RAL  274 (281)
T ss_pred             ccc
Confidence            543

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=88.39  E-value=2.5  Score=39.16  Aligned_cols=73  Identities=7%  Similarity=0.089  Sum_probs=54.3

Q ss_pred             HHHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEe
Q 023442           65 YKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMV  141 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmI  141 (282)
                      .+.+++.|+|.|.|.-.|.  .|++         |.++++.+.++.+. .++|++.-|+=-++ ++++++++.|+--|=|
T Consensus       159 ~~Fv~~TgvD~LAvaiGt~HG~Y~~---------p~l~~~~l~~I~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi  228 (283)
T PRK07998        159 KDFVERTGCDMLAVSIGNVHGLEDI---------PRIDIPLLKRIAEV-SPVPLVIHGGSGIPPEILRSFVNYKVAKVNI  228 (283)
T ss_pred             HHHHHHhCcCeeehhccccccCCCC---------CCcCHHHHHHHHhh-CCCCEEEeCCCCCCHHHHHHHHHcCCcEEEE
Confidence            3445789999999875552  3322         45668888888765 58999988876655 7788888899999999


Q ss_pred             cHHhhh
Q 023442          142 GRAAYQ  147 (282)
Q Consensus       142 GRgal~  147 (282)
                      ++.+..
T Consensus       229 ~Tel~~  234 (283)
T PRK07998        229 ASDLRK  234 (283)
T ss_pred             CHHHHH
Confidence            987643

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=88.25  E-value=2.3  Score=37.23  Aligned_cols=36  Identities=22%  Similarity=0.521  Sum_probs=29.1

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .++.|..-||| |.+.+.++.+.|+|.+.+|+++.++
T Consensus       165 ~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~  200 (201)
T PF00834_consen  165 LDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKA  200 (201)
T ss_dssp             CGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred             CceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence            46889999999 6778989999999999999988653

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=87.98  E-value=9.5  Score=35.18  Aligned_cols=72  Identities=11%  Similarity=0.258  Sum_probs=51.9

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIG  142 (282)
                      +.+++.|+|+|.|.-.|.  .|.+.       -|.++|+.+.++.+. .++|++.-|+=-++ ++++++++.|+-=|=|+
T Consensus       155 ~Fv~~TgvD~LAvsiGt~HG~Y~~~-------~p~L~~~~L~~i~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  226 (276)
T cd00947         155 EFVEETGVDALAVAIGTSHGAYKGG-------EPKLDFDRLKEIAER-VNVPLVLHGGSGIPDEQIRKAIKLGVCKININ  226 (276)
T ss_pred             HHHHHHCCCEEEeccCccccccCCC-------CCccCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            345678999999864442  33321       145679988888775 48999988886655 66888888898888888


Q ss_pred             HHh
Q 023442          143 RAA  145 (282)
Q Consensus       143 Rga  145 (282)
                      ..+
T Consensus       227 T~l  229 (276)
T cd00947         227 TDL  229 (276)
T ss_pred             hHH
Confidence            765

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=87.89  E-value=12  Score=34.16  Aligned_cols=107  Identities=7%  Similarity=0.043  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +...+-+...++. .+.|+.+=++- . +   .+++.+ +++.++++|+|+|.++.......+.  .+...-+..-.+.+
T Consensus        83 ~~~~~~i~~~~~~~~~~pvi~si~g-~-~---~~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~--~~~~~~~~~~~eiv  154 (289)
T cd02810          83 DVWLQDIAKAKKEFPGQPLIASVGG-S-S---KEDYVE-LARKIERAGAKALELNLSCPNVGGG--RQLGQDPEAVANLL  154 (289)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEecc-C-C---HHHHHH-HHHHHHHhCCCEEEEEcCCCCCCCC--cccccCHHHHHHHH
Confidence            4333334444444 47888887652 2 2   234443 3556778899999998543211110  00000011112334


Q ss_pred             HHHHhcCCCceEEE--ccCCCCHHHHHH---HHH-cCCCEEEec
Q 023442          105 YALLRDFPDLTFTL--NGGINTVDEVNA---ALR-KGAHHVMVG  142 (282)
Q Consensus       105 ~~l~~~~~~ipVi~--nGdI~s~eda~~---~l~-~g~DgVmIG  142 (282)
                      .++++. .++||+.  ++++ +.++..+   .++ .|+|+|.+-
T Consensus       155 ~~vr~~-~~~pv~vKl~~~~-~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         155 KAVKAA-VDIPLLVKLSPYF-DLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             HHHHHc-cCCCEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence            444443 4788764  4544 4333333   333 899999875

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=87.87  E-value=1.4  Score=40.15  Aligned_cols=75  Identities=19%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..++.|+++|.|-....+++|.            ++.+..+.. ..++||..===|.++-++.++...|+|+|.+==
T Consensus        71 ia~~Ye~~GAa~iSVLTd~~~F~Gs------------~e~L~~v~~-~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~  137 (254)
T COG0134          71 IAKAYEEGGAAAISVLTDPKYFQGS------------FEDLRAVRA-AVDLPVLRKDFIIDPYQIYEARAAGADAVLLIV  137 (254)
T ss_pred             HHHHHHHhCCeEEEEecCccccCCC------------HHHHHHHHH-hcCCCeeeccCCCCHHHHHHHHHcCcccHHHHH
Confidence            4567789999999999887777885            677766655 468999777778899999999999999997766


Q ss_pred             HhhhCCcc
Q 023442          144 AAYQNPWY  151 (282)
Q Consensus       144 gal~nP~i  151 (282)
                      ++|.+-.+
T Consensus       138 ~~L~~~~l  145 (254)
T COG0134         138 AALDDEQL  145 (254)
T ss_pred             HhcCHHHH
Confidence            66666543

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=87.57  E-value=8.4  Score=34.34  Aligned_cols=37  Identities=22%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++-|-.-||| +.+.+.++.+.|+|-+..|+++.++++
T Consensus       169 ~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d  205 (220)
T COG0036         169 DILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADD  205 (220)
T ss_pred             CeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCcc
Confidence            4557789998 889999999899999999998877777

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=87.55  E-value=3  Score=38.49  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=47.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++.. .++||+++=+-.|.+++.++.+    .|+|+||
T Consensus        28 ~~~~~~Gv~gi~v~GstGE~~~Ls~~E-------r~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~  100 (294)
T TIGR02313        28 EFQIEGGSHAISVGGTSGEPGSLTLEE-------RKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAM  100 (294)
T ss_pred             HHHHHcCCCEEEECccCcccccCCHHH-------HHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEE
Confidence            345579999999999876433332111       122333333322 2589875444456666655443    7999999


Q ss_pred             ecHHhhhCC
Q 023442          141 VGRAAYQNP  149 (282)
Q Consensus       141 IGRgal~nP  149 (282)
                      +.-..+..|
T Consensus       101 v~pP~y~~~  109 (294)
T TIGR02313       101 VIVPYYNKP  109 (294)
T ss_pred             EcCccCCCC
Confidence            998777666

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=87.52  E-value=9  Score=35.47  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=56.7

Q ss_pred             HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442           28 VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA  106 (282)
Q Consensus        28 ~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~  106 (282)
                      +.+.++.+++.. ..+|.|=++       +.++..+    . .++|+|.|-+---+                  -+.+.+
T Consensus       176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~e----a-~~agaDiI~LDn~~------------------~e~l~~  225 (284)
T PRK06096        176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIA----A-LRAQPDVLQLDKFS------------------PQQATE  225 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECC-------CHHHHHH----H-HHcCCCEEEECCCC------------------HHHHHH
Confidence            445666666543 234554432       3444322    2 37999999873311                  122222


Q ss_pred             H---Hh-cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          107 L---LR-DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       107 l---~~-~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .   ++ ..+++.+.++||| |++.+.++.++|+|.+.+|- +..-|++
T Consensus       226 av~~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~ga-l~~a~~~  272 (284)
T PRK06096        226 IAQIAPSLAPHCTLSLAGGI-NLNTLKNYADCGIRLFITSA-PYYAAPA  272 (284)
T ss_pred             HHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECc-cccCCCc
Confidence            2   22 1357889999999 89999999999999998884 3444553

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=87.38  E-value=1.1  Score=40.52  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +++|++.|+|.. +++.++++ ..+||+.||++.+ +|.-|
T Consensus       199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f  237 (242)
T cd00311         199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESF  237 (242)
T ss_pred             ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHH
Confidence            689999999966 99999999 5699999999998 45444

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.30  E-value=5.2  Score=35.17  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .++|++.+-+.+-.. ..|             -.+++.+..=++++|++..||| |.+.+.+.++.|+..+..|..+.
T Consensus       114 ~~~Ga~~vK~FPa~~-~GG-------------~~yikal~~plp~~~l~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~  176 (201)
T PRK06015        114 REEGYTVLKFFPAEQ-AGG-------------AAFLKALSSPLAGTFFCPTGGI-SLKNARDYLSLPNVVCVGGSWVA  176 (201)
T ss_pred             HHCCCCEEEECCchh-hCC-------------HHHHHHHHhhCCCCcEEecCCC-CHHHHHHHHhCCCeEEEEchhhC
Confidence            478999988876221 112             2556666665789999999999 77999999997666666665444

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=87.23  E-value=6.7  Score=36.49  Aligned_cols=104  Identities=10%  Similarity=0.019  Sum_probs=60.4

Q ss_pred             CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      |..|-...-..+.-.++++.+.+.+  ++||.+-+-.  .   +..+.++ .++.+++.|+|++-+..-.  |...+.  
T Consensus        50 GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~--~---~t~~ai~-~a~~A~~~Gad~vlv~~P~--y~~~~~--  119 (309)
T cd00952          50 GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT--L---NTRDTIA-RTRALLDLGADGTMLGRPM--WLPLDV--  119 (309)
T ss_pred             cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc--C---CHHHHHH-HHHHHHHhCCCEEEECCCc--CCCCCH--
Confidence            4445555556666677777777665  4888876531  1   2334444 4567789999999998632  111110  


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR  133 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~  133 (282)
                       +    --++++.++++..+++||+ +     .|--.+++.+.++.+
T Consensus       120 -~----~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~  161 (309)
T cd00952         120 -D----TAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ  161 (309)
T ss_pred             -H----HHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence             0    1156666776643257775 2     343346777777765

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=87.14  E-value=0.83  Score=41.76  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=37.8

Q ss_pred             HHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCcc-----HHHHHHHHhc-CCC-ceEEEccCCCCHHHHHHHHH-c-CC
Q 023442           67 VSSLSPTRHFIIH-SRKALLNGISPAENRTIPPLK-----YEYYYALLRD-FPD-LTFTLNGGINTVDEVNAALR-K-GA  136 (282)
Q Consensus        67 ~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~-----~~~i~~l~~~-~~~-ipVi~nGdI~s~eda~~~l~-~-g~  136 (282)
                      .+.++|+|.|.+| |-|.  .|..++..  ...+.     .+.+.+.+++ .++ |-++-.|-|.+++|++.+++ + ||
T Consensus       165 ~M~~AGaDiiv~H~GlT~--gG~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~  240 (268)
T PF09370_consen  165 AMAEAGADIIVAHMGLTT--GGSIGAKT--ALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI  240 (268)
T ss_dssp             HHHHHT-SEEEEE-SS--------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred             HHHHcCCCEEEecCCccC--CCCcCccc--cCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence            3458999999999 4442  23222221  11111     1112233333 244 45566778999999999998 5 59


Q ss_pred             CEEEecHH
Q 023442          137 HHVMVGRA  144 (282)
Q Consensus       137 DgVmIGRg  144 (282)
                      +|..-|..
T Consensus       241 ~Gf~G~Ss  248 (268)
T PF09370_consen  241 HGFIGASS  248 (268)
T ss_dssp             EEEEESTT
T ss_pred             CEEecccc
Confidence            98876643

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=86.99  E-value=14  Score=33.97  Aligned_cols=104  Identities=16%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEEecCCc--ccCCCCcCCcCCCCCccHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKA--LLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G-v~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+.++.+. ++..+.|+.+=+. |.+    .+++.+ +++.++++| +|.|.++.--.  ...|..   ...-+..-++.
T Consensus        79 ~~~~~~~~-~~~~~~p~i~si~-g~~----~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~---~~~~~~~~~ei  148 (301)
T PRK07259         79 FIEEELPW-LEEFDTPIIANVA-GST----EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMA---FGTDPELAYEV  148 (301)
T ss_pred             HHHHHHHH-HhccCCcEEEEec-cCC----HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccc---cccCHHHHHHH
Confidence            33344443 3344788888664 322    344444 456678999 99999953110  101111   10111122344


Q ss_pred             HHHHHhcCCCceEEE--ccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          104 YYALLRDFPDLTFTL--NGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       104 i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +..+.+. .++||+.  +.++.+..++.+.++ .|+|+|.+
T Consensus       149 v~~vr~~-~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        149 VKAVKEV-VKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             HHHHHHh-cCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence            4455443 4788875  445555555555555 89999865

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=86.49  E-value=16  Score=34.01  Aligned_cols=104  Identities=6%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ..+...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|.+|+-+                 .-+
T Consensus       130 ~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~R-a~aY~eAGAD~ifi~~~~-----------------~~~  191 (294)
T TIGR02319       130 STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRR-SREYVAAGADCIFLEAML-----------------DVE  191 (294)
T ss_pred             CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHH-HHHHHHhCCCEEEecCCC-----------------CHH
Confidence            4444444445555433 344555556321111235565555 345678999999998721                 034


Q ss_pred             HHHHHHhcCCCceE---EEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          103 YYYALLRDFPDLTF---TLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       103 ~i~~l~~~~~~ipV---i~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.++.++. +.|+   +..|+-.-.-.+.++.+.|++.|..|-.++
T Consensus       192 ei~~~~~~~-~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~  237 (294)
T TIGR02319       192 EMKRVRDEI-DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGW  237 (294)
T ss_pred             HHHHHHHhc-CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHH
Confidence            556666653 4555   333332222345555567999999885543

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK14565 triosephosphate isomerase; Provisional

Probab=86.48  E-value=1.4  Score=39.65  Aligned_cols=39  Identities=13%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      .+++|++.|+| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus       188 ~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl-~~~~f  227 (237)
T PRK14565        188 SKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL-DVDSF  227 (237)
T ss_pred             CCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh-cHHHH
Confidence            46899999998 7888888887 8999999999998 55545

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=86.46  E-value=12  Score=35.75  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCC-CcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGI-SPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR  133 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~-~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~  133 (282)
                      +.+++.|+|.|.|.-.|.  .|++. .|    .-+.++|+.+.++.+..+++|++.-|+=-.+++..+.++
T Consensus       178 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p----~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~  244 (347)
T TIGR01521       178 DFVKKTKVDALAVAIGTSHGAYKFTRKP----TGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIIN  244 (347)
T ss_pred             HHHHHHCcCEEehhcccccCCcCCCCCC----ChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHH
Confidence            345688999999875552  34331 11    002367998888876543799999999777644444443

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=86.28  E-value=14  Score=32.98  Aligned_cols=37  Identities=24%  Similarity=0.547  Sum_probs=31.7

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++.|-.-||| +.+.+.++.+.|+|.+++|+++.+.+.
T Consensus       171 ~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d  207 (223)
T PRK08745        171 PIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPD  207 (223)
T ss_pred             CeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCC
Confidence            5778899999 689999999999999999999765554

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=86.14  E-value=4.2  Score=35.97  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.|++.+-+++-... .|             ..+++.+..-++++|++..||| +.+++.+.++.| +.+.+|.+.|.+
T Consensus       125 ~~~Ga~~vKlFPa~~~-gg-------------~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag-~v~~vggs~L~~  188 (212)
T PRK05718        125 MELGLRTFKFFPAEAS-GG-------------VKMLKALAGPFPDVRFCPTGGI-SPANYRDYLALP-NVLCIGGSWMVP  188 (212)
T ss_pred             HHCCCCEEEEccchhc-cC-------------HHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHhCC-CEEEEEChHhCC
Confidence            4678888877542110 11             3556666666789999999999 679999999977 455555566555


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      +.
T Consensus       189 ~~  190 (212)
T PRK05718        189 KD  190 (212)
T ss_pred             cc
Confidence            44

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=85.98  E-value=2.6  Score=36.15  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      .+.++.++ .++|||+.|=|.+-||+.++++.|+-+|.-
T Consensus       135 vi~~i~~~-t~~piIAGGLi~t~Eev~~Al~aGA~avST  172 (181)
T COG1954         135 VIKEITEK-THIPIIAGGLIETEEEVREALKAGAVAVST  172 (181)
T ss_pred             HHHHHHHh-cCCCEEeccccccHHHHHHHHHhCcEEEee
Confidence            34455554 689999999999999999999999888863

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=85.72  E-value=18  Score=33.50  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCC-CHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN-TVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~-s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+++.|+|.|.|.-.|.  .|.|        .|.++|+.+.++.+. .++|++.-|+=- +.++++++++.|+-=|=|+
T Consensus       162 ~Fv~~TgvD~LAvaiGt~HG~y~~--------~p~Ld~~~L~~i~~~-~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  232 (284)
T PRK12857        162 RFVEETGVDALAIAIGTAHGPYKG--------EPKLDFDRLAKIKEL-VNIPIVLHGSSGVPDEAIRKAISLGVRKVNID  232 (284)
T ss_pred             HHHHHHCCCEEeeccCccccccCC--------CCcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            344688999999875552  3433        145679988888765 589999877654 4566777888888877777


Q ss_pred             HHhh
Q 023442          143 RAAY  146 (282)
Q Consensus       143 Rgal  146 (282)
                      ..+.
T Consensus       233 T~~~  236 (284)
T PRK12857        233 TNIR  236 (284)
T ss_pred             cHHH
Confidence            6653

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=85.61  E-value=4  Score=37.57  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEE
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHV  139 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgV  139 (282)
                      .+.+.+.|++.|.+-|-|......+..+       +-+.+...++.. .++|||++-+- +.+++.++.+    .|||+|
T Consensus        27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v   98 (289)
T cd00951          27 VEWLLSYGAAALFAAGGTGEFFSLTPDE-------YAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGI   98 (289)
T ss_pred             HHHHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEE
Confidence            3445679999999988775433332211       122233333322 36899876554 6667666554    799999


Q ss_pred             EecHHhhhCC
Q 023442          140 MVGRAAYQNP  149 (282)
Q Consensus       140 mIGRgal~nP  149 (282)
                      |+--..+..|
T Consensus        99 ~~~pP~y~~~  108 (289)
T cd00951          99 LLLPPYLTEA  108 (289)
T ss_pred             EECCCCCCCC
Confidence            9976666554

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=85.37  E-value=4.7  Score=35.95  Aligned_cols=46  Identities=26%  Similarity=0.404  Sum_probs=37.0

Q ss_pred             HHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++.+-.+ ++-+++--||+|++|+....+.|+.+|.+|..++..-+
T Consensus       228 skL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sD  274 (289)
T KOG4201|consen  228 SKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSD  274 (289)
T ss_pred             HHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccC
Confidence            44444333 56788999999999999999999999999999986544

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=85.34  E-value=4.2  Score=37.68  Aligned_cols=84  Identities=7%  Similarity=0.012  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR--  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~--  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|......+..+       +.+.+...++.. .++|||++-+- +.+++.+..+  
T Consensus        27 ~~~l~~l-i~~l~~~Gv~Gi~~~GstGE~~~Lt~eE-------r~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a   97 (303)
T PRK03620         27 EAAYREH-LEWLAPYGAAALFAAGGTGEFFSLTPDE-------YSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAA   97 (303)
T ss_pred             HHHHHHH-HHHHHHcCCCEEEECcCCcCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHH
Confidence            3444433 3455679999999988775443333221       122333333322 35898855443 6666665553  


Q ss_pred             --cCCCEEEecHHhhhCC
Q 023442          134 --KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP  149 (282)
                        .|+|+||+.-..+..|
T Consensus        98 ~~~Gadav~~~pP~y~~~  115 (303)
T PRK03620         98 ERAGADGILLLPPYLTEA  115 (303)
T ss_pred             HHhCCCEEEECCCCCCCC
Confidence              7999999975554443

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=85.32  E-value=12  Score=34.28  Aligned_cols=115  Identities=16%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-ccc-CCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALL-NGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~-~G~~~ad~~   94 (282)
                      .|+..|+|.+++.    ++ ...++||-+|=-++    .+++|.+.. +..+-..|...+++=-|- +.+ ++.     +
T Consensus       134 vGARNMQNF~LLk----e~-G~~~kPvLLKRg~~----aTieEwL~A-AEYI~s~GN~~vILCERGIRtfe~~T-----R  198 (286)
T COG2876         134 VGARNMQNFALLK----EV-GRQNKPVLLKRGLS----ATIEEWLNA-AEYILSHGNGNVILCERGIRTFEKAT-----R  198 (286)
T ss_pred             hcccchhhhHHHH----Hh-cccCCCeEEecCcc----ccHHHHHHH-HHHHHhCCCCcEEEEecccccccccc-----c
Confidence            3777888887744    43 23489999994332    356666543 445557888888876442 111 111     0


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccC----CCCHH--HHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGG----INTVD--EVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGd----I~s~e--da~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        --++...+..+++ .+++|||.+=.    =.++-  -+..++..|+||+|+=  .-.||.-
T Consensus       199 --ntLDi~aV~~~kq-~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~~  256 (286)
T COG2876         199 --NTLDISAVPILKQ-ETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPEK  256 (286)
T ss_pred             --ceechHHHHHHHh-hcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCccc
Confidence              0123455544444 57899997421    11221  1223334799999995  4556664

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=85.26  E-value=18  Score=33.69  Aligned_cols=106  Identities=7%  Similarity=0.059  Sum_probs=60.3

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +-.++...+=|++++++. +.++.|=-|.---....+++.++. ++...++|+|.|.+|+-+.                 
T Consensus       129 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~R-a~aY~eAGAD~ifi~~~~~-----------------  190 (292)
T PRK11320        129 IVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIER-AQAYVEAGADMIFPEAMTE-----------------  190 (292)
T ss_pred             ccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHH-HHHHHHcCCCEEEecCCCC-----------------
Confidence            445555555556665543 555666556421111235565555 4567789999999998321                 


Q ss_pred             HHHHHHHHhcCCCceEEE---ccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFPDLTFTL---NGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~---nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+.++.+.. +.|+.+   +|+-.-.-+++++.+.|+.-|..|-.++
T Consensus       191 ~~~i~~~~~~~-~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~  238 (292)
T PRK11320        191 LEMYRRFADAV-KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAF  238 (292)
T ss_pred             HHHHHHHHHhc-CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence            35566666653 567733   3332211234455557999999995543

>PLN02561 triosephosphate isomerase

Probab=84.93  E-value=2  Score=39.09  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      .+++|++.|+| +++.+.+++. .++||+.||++.|. |. |..
T Consensus       203 ~~i~ILYGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~-~~-F~~  243 (253)
T PLN02561        203 ATTRIIYGGSV-TGANCKELAAQPDVDGFLVGGASLK-PE-FID  243 (253)
T ss_pred             ccceEEEeCCc-CHHHHHHHhcCCCCCeEEEehHhhH-HH-HHH
Confidence            36899999999 5555555665 89999999999998 65 643

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=84.85  E-value=14  Score=34.37  Aligned_cols=100  Identities=17%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.=.++++.+++.+  .+||.+.+-  -.   +..+.++ +++.+++.|+|++-+.+.-  |...+.     
T Consensus        49 GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g--~~---~t~eai~-lak~a~~~Gad~il~v~Py--Y~k~~~-----  115 (299)
T COG0329          49 GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG--SN---STAEAIE-LAKHAEKLGADGILVVPPY--YNKPSQ-----  115 (299)
T ss_pred             ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC--CC---cHHHHHH-HHHHHHhcCCCEEEEeCCC--CcCCCh-----
Confidence            4444446666677888888877  478877542  22   2334444 5677899999999998642  111100     


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR  133 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~  133 (282)
                        .--++++.++++.. ++||| +|     |-=.+++.+.++-+
T Consensus       116 --~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~la~  156 (299)
T COG0329         116 --EGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARLAE  156 (299)
T ss_pred             --HHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHhc
Confidence              01155666776654 78764 56     66678888877765

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=84.66  E-value=14  Score=32.25  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=55.8

Q ss_pred             HHHHHHHhhcCCccEEEEecCC-CC-C---CCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIG-VD-D---HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G-~d-~---~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+.++++++.+++||...+|-- ++ .   ....+    ++ +.+.++|+|.|.+-.+...    ++..     ....+.
T Consensus        45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~----~v-~~a~~aGad~I~~d~~~~~----~p~~-----~~~~~~  110 (221)
T PRK01130         45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLK----EV-DALAAAGADIIALDATLRP----RPDG-----ETLAEL  110 (221)
T ss_pred             HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHH----HH-HHHHHcCCCEEEEeCCCCC----CCCC-----CCHHHH
Confidence            4567777877899986444411 00 0   01111    22 3456899998887654210    0000     001233


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +..+.+. +.+|++.  ++.|.+++..+.+.|+|.+.++
T Consensus       111 i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~  146 (221)
T PRK01130        111 VKRIKEY-PGQLLMA--DCSTLEEGLAAQKLGFDFIGTT  146 (221)
T ss_pred             HHHHHhC-CCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence            3344332 5788775  6789999988888999999774

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=84.58  E-value=4.1  Score=42.36  Aligned_cols=74  Identities=12%  Similarity=0.036  Sum_probs=58.3

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..++.|+++|.|..-..+++|.            ++.+.++.+. +++||+-.==|.++-++.+....|||+|.+==
T Consensus        75 ~a~~y~~~GA~aiSVlTe~~~F~Gs------------~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~  141 (695)
T PRK13802         75 LAREYEQGGASAISVLTEGRRFLGS------------LDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIV  141 (695)
T ss_pred             HHHHHHHcCCcEEEEecCcCcCCCC------------HHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhH
Confidence            4566789999999999877666775            6777666654 68999877669999999999999999998776


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      ++|.+-.
T Consensus       142 ~~L~~~~  148 (695)
T PRK13802        142 AALDDAQ  148 (695)
T ss_pred             hhcCHHH
Confidence            6665433

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.55  E-value=14  Score=35.22  Aligned_cols=64  Identities=9%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHH
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL  132 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l  132 (282)
                      +.+++.|+|.|.|.-.|.  .|++...   ...+.++|+.+.++.+..+++|++.-|+=-.++|....+
T Consensus       180 ~Fv~~TgvD~LAvaiGT~HG~Yk~~~~---p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~  245 (347)
T PRK09196        180 DFVKKTQVDALAIAIGTSHGAYKFTRK---PTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDII  245 (347)
T ss_pred             HHHHHhCcCeEhhhhccccCCCCCCCC---CChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHH
Confidence            345689999998864442  3333100   011237899998887764479999999866655444333

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=84.51  E-value=20  Score=33.12  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .|+.++++.++    ++++.+ ++.||.+|=-.+.    +.+++...+ ..+.+.|...|.+--|--.+ |..    +. 
T Consensus       112 IgAr~~rntdL----L~a~~~-t~kpV~lKrGqf~----s~~e~~~aa-e~i~~~Gn~~vilcERG~~f-gy~----~~-  175 (281)
T PRK12457        112 VPAFLARQTDL----VVAIAK-TGKPVNIKKPQFM----SPTQMKHVV-SKCREAGNDRVILCERGSSF-GYD----NL-  175 (281)
T ss_pred             eCchhhchHHH----HHHHhc-cCCeEEecCCCcC----CHHHHHHHH-HHHHHcCCCeEEEEeCCCCC-CCC----Cc-
Confidence            47888888766    444433 4899999943222    234555444 44567899988887663222 221    11 


Q ss_pred             CCccHHHHHHHHhcCCCceEEEc---------------cCCCC--HHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s--~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                       .++...+..+++..+++|||.-               ||.+.  +.-++..+..|+||+||=  .--||.
T Consensus       176 -~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iE--vHpdP~  243 (281)
T PRK12457        176 -VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLE--AHPDPD  243 (281)
T ss_pred             -ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE--ecCCcc
Confidence             1223444444443367899852               33221  122333444899999996  333554

>PLN02417 dihydrodipicolinate synthase

Probab=84.50  E-value=5.2  Score=36.64  Aligned_cols=76  Identities=13%  Similarity=0.050  Sum_probs=43.9

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH----cCCCEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR----KGAHHV  139 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~----~g~DgV  139 (282)
                      +.+.+.|++.|.+-|-|....-.+...       +.+.+...++.. .++||++ .|.. |.+++.++.+    .|+|+|
T Consensus        29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~E-------r~~~~~~~~~~~~~~~pvi~gv~~~-~t~~~i~~a~~a~~~Gadav  100 (280)
T PLN02417         29 NMQIENGAEGLIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGGKIKVIGNTGSN-STREAIHATEQGFAVGMHAA  100 (280)
T ss_pred             HHHHHcCCCEEEECccCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEEECCCc-cHHHHHHHHHHHHHcCCCEE
Confidence            344578999999999775432222111       122232333322 2588864 5554 4455544432    799999


Q ss_pred             EecHHhhhCC
Q 023442          140 MVGRAAYQNP  149 (282)
Q Consensus       140 mIGRgal~nP  149 (282)
                      |+.-..+..|
T Consensus       101 ~~~~P~y~~~  110 (280)
T PLN02417        101 LHINPYYGKT  110 (280)
T ss_pred             EEcCCccCCC
Confidence            9987666555

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=84.50  E-value=12  Score=35.63  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhCCCCEEEEecCCc--c---c-CCCC-cCCcC--CCCCccHHHHHHHHhcC--CCceEEEccCCC-CHH
Q 023442           59 QLCDFIYKVSSLSPTRHFIIHSRKA--L---L-NGIS-PAENR--TIPPLKYEYYYALLRDF--PDLTFTLNGGIN-TVD  126 (282)
Q Consensus        59 e~~~~v~~~le~~Gv~~i~VH~Rt~--~---~-~G~~-~ad~~--~i~~~~~~~i~~l~~~~--~~ipVi~nGdI~-s~e  126 (282)
                      +++...+++..+.|+|.|-+---+.  .   . -|.. ...+.  .+.. .-+.++.+++..  -.+||+..||=. +.+
T Consensus       217 d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~-~~~~~~~~V~ac~ag~vpVviAGG~k~~~~  295 (348)
T PRK09250        217 DLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDH-PIDLVRYQVANCYMGRRGLINSGGASKGED  295 (348)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccc-hHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence            4566778899999999987752210  0   0 0000 00000  0000 022344444432  158988888765 444


Q ss_pred             HH----HHH---HHcCCCEEEecHHhhhCCc
Q 023442          127 EV----NAA---LRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       127 da----~~~---l~~g~DgVmIGRgal~nP~  150 (282)
                      ++    +.+   ++.|+.||++||-+...|.
T Consensus       296 e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~  326 (348)
T PRK09250        296 DLLDAVRTAVINKRAGGMGLIIGRKAFQRPM  326 (348)
T ss_pred             HHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence            44    445   5569999999998766665

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=84.16  E-value=4.7  Score=37.35  Aligned_cols=75  Identities=16%  Similarity=0.359  Sum_probs=51.7

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIG  142 (282)
                      +.+++.|+|.|.|.-.|.  .|++.      ..|.++++.+.++.+..+++|++.-|+=..+ ++++++++.|+-=|=|+
T Consensus       162 ~Fv~~TgvD~LAvaiGt~HG~y~~~------~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~  235 (287)
T PF01116_consen  162 EFVEETGVDALAVAIGTAHGMYKGG------KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIG  235 (287)
T ss_dssp             HHHHHHTTSEEEE-SSSBSSSBSSS------SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEES
T ss_pred             HHHHHhCCCEEEEecCccccccCCC------CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEe
Confidence            345789999999976553  34431      1255678988888775338999998886655 48888888888888888


Q ss_pred             HHhh
Q 023442          143 RAAY  146 (282)
Q Consensus       143 Rgal  146 (282)
                      ..+.
T Consensus       236 T~~~  239 (287)
T PF01116_consen  236 TELR  239 (287)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            7664

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=84.16  E-value=2  Score=41.41  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.|+.+..+.+. .++|||. .+|.|.+|++.+++.|||+|.++
T Consensus       230 ~~ltW~di~~lr~~-~~~pviv-KgV~s~~dA~~a~~~Gvd~I~Vs  273 (381)
T PRK11197        230 PSISWKDLEWIRDF-WDGPMVI-KGILDPEDARDAVRFGADGIVVS  273 (381)
T ss_pred             CCCCHHHHHHHHHh-CCCCEEE-EecCCHHHHHHHHhCCCCEEEEC
Confidence            34578888888764 5888865 56799999999999999999875

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=84.10  E-value=5.1  Score=37.30  Aligned_cols=85  Identities=11%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH--
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR--  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~--  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+       +-+.+...++.. .++|||++=+=.+.+++.++.+  
T Consensus        28 ~~~l~~lv-~~li~~Gv~Gi~v~GstGE~~~Lt~eE-------r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A   99 (309)
T cd00952          28 LDETARLV-ERLIAAGVDGILTMGTFGECATLTWEE-------KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRAL   99 (309)
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECcccccchhCCHHH-------HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHH
Confidence            33333333 345579999999998775433332211       122233333322 2588875444345555555543  


Q ss_pred             --cCCCEEEecHHhhhCC
Q 023442          134 --KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP  149 (282)
                        .|+|+||+--..+..|
T Consensus       100 ~~~Gad~vlv~~P~y~~~  117 (309)
T cd00952         100 LDLGADGTMLGRPMWLPL  117 (309)
T ss_pred             HHhCCCEEEECCCcCCCC
Confidence              7999999997765555

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=84.05  E-value=28  Score=30.39  Aligned_cols=92  Identities=17%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++.+.++++.+++..+.|+.+.+...... ....+.    .+.+.++|++.|.+|.-.       +          .+.
T Consensus        37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~-~~~~~~----~~~~~~~g~d~v~l~~~~-------~----------~~~   94 (236)
T cd04730          37 TPEALRAEIRKIRALTDKPFGVNLLVPSSN-PDFEAL----LEVALEEGVPVVSFSFGP-------P----------AEV   94 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEeEecCCCC-cCHHHH----HHHHHhCCCCEEEEcCCC-------C----------HHH
Confidence            467777888888876556766665542210 122332    234568999999998631       0          223


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +.++.+  .+++++..  +.+.++++++.+.|+|++.+
T Consensus        95 ~~~~~~--~~i~~i~~--v~~~~~~~~~~~~gad~i~~  128 (236)
T cd04730          95 VERLKA--AGIKVIPT--VTSVEEARKAEAAGADALVA  128 (236)
T ss_pred             HHHHHH--cCCEEEEe--CCCHHHHHHHHHcCCCEEEE
Confidence            333333  36777654  67888888877789999875

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=84.05  E-value=4.5  Score=37.56  Aligned_cols=86  Identities=14%  Similarity=0.159  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+ +.+.+.+.|++.|.+-|-|+...-.+..+       +.+.+...++.. ..+|||+ .|...|.+.++.... 
T Consensus        24 ~~a~~~-lv~~li~~Gv~gi~~~GttGE~~~Ls~eE-------r~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a   95 (299)
T COG0329          24 EEALRR-LVEFLIAAGVDGLVVLGTTGESPTLTLEE-------RKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHA   95 (299)
T ss_pred             HHHHHH-HHHHHHHcCCCEEEECCCCccchhcCHHH-------HHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHH
Confidence            334333 34456689999999999775433332211       112222222221 2588875 666555544443332 


Q ss_pred             --cCCCEEEecHHhhhCCc
Q 023442          134 --KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~  150 (282)
                        .|+||+|+--..+..|.
T Consensus        96 ~~~Gad~il~v~PyY~k~~  114 (299)
T COG0329          96 EKLGADGILVVPPYYNKPS  114 (299)
T ss_pred             HhcCCCEEEEeCCCCcCCC
Confidence              79999999988777775

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=83.83  E-value=1.4  Score=39.97  Aligned_cols=39  Identities=13%  Similarity=0.194  Sum_probs=32.7

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++||.+.|+|..-.+.+.+.+.++||+.||++.+.-..
T Consensus       201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~  239 (251)
T COG0149         201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADD  239 (251)
T ss_pred             CCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchh
Confidence            489999999997777776666699999999998887655

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=83.67  E-value=7.1  Score=36.57  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=44.1

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cC
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KG  135 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g  135 (282)
                      +.+++.|+|+|.|.-.|.  .|+..+      -|.++|+.+.++.+. .++|++.-|+=-.+++..+-+. +|
T Consensus       162 ~Fv~~TgvD~LAvaiGt~HG~Yk~~~------~p~L~f~~L~~I~~~-~~iPLVLHGgSGip~e~~~~~~~~g  227 (307)
T PRK05835        162 QFVKESQVDYLAPAIGTSHGAFKFKG------EPKLDFERLQEVKRL-TNIPLVLHGASAIPDDVRKSYLDAG  227 (307)
T ss_pred             HHHHhhCCCEEEEccCccccccCCCC------CCccCHHHHHHHHHH-hCCCEEEeCCCCCchHHhhhhhhhc
Confidence            345689999999875552  333100      256789999888765 5899999999888887555554 54

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=83.50  E-value=14  Score=34.08  Aligned_cols=104  Identities=11%  Similarity=0.122  Sum_probs=57.7

Q ss_pred             CcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           15 GCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        15 g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      |..|-...-..+.-.++++.+.+.+  ++||.+-+-  -.   +..+.++ .++.+++.|+|++.+..-.  |...+.. 
T Consensus        43 GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~---~t~~~i~-la~~a~~~Gad~v~v~~P~--y~~~~~~-  113 (290)
T TIGR00683        43 GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG--SV---NLKEAVE-LGKYATELGYDCLSAVTPF--YYKFSFP-  113 (290)
T ss_pred             CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CC---CHHHHHH-HHHHHHHhCCCEEEEeCCc--CCCCCHH-
Confidence            3334334445555567777776655  478877542  11   2334444 4567789999999997532  1111110 


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR  133 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~  133 (282)
                            --++++.++++..+++||+ .     .|--.+++.+.++.+
T Consensus       114 ------~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~  154 (290)
T TIGR00683       114 ------EIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK  154 (290)
T ss_pred             ------HHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence                  0145556665543356764 3     355557777776665

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PTZ00333 triosephosphate isomerase; Provisional

Probab=83.44  E-value=1.5  Score=39.89  Aligned_cols=38  Identities=13%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      +++|++.|+| +++.+.+++. .++||+.||++.+. +. |.
T Consensus       207 ~~~ILYGGSV-~~~N~~~l~~~~~vDG~LvG~asl~-~~-f~  245 (255)
T PTZ00333        207 ATRIIYGGSV-NEKNCKELIKQPDIDGFLVGGASLK-PD-FV  245 (255)
T ss_pred             cceEEEcCCC-CHHHHHHHhcCCCCCEEEEehHhhh-hh-HH
Confidence            6899999999 5566666665 89999999999997 65 53

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=83.35  E-value=7.3  Score=35.30  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+..+       +-+.+...++.. .++||++.=+=.|.+++.++.+    .|+|+||
T Consensus        25 ~~l~~~Gv~gi~~~GstGE~~~ls~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~   97 (281)
T cd00408          25 EFLIEAGVDGLVVLGTTGEAPTLTDEE-------RKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVL   97 (281)
T ss_pred             HHHHHcCCCEEEECCCCcccccCCHHH-------HHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEE
Confidence            345578999999988775433332111       122233333322 2688864433345554444432    7999999


Q ss_pred             ecHHhhhCC
Q 023442          141 VGRAAYQNP  149 (282)
Q Consensus       141 IGRgal~nP  149 (282)
                      +.-..+..|
T Consensus        98 v~pP~y~~~  106 (281)
T cd00408          98 VVPPYYNKP  106 (281)
T ss_pred             ECCCcCCCC
Confidence            986665444

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]

Probab=83.27  E-value=9  Score=38.59  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=35.7

Q ss_pred             HhcCCCceEEEccCCCCHHHHHHHHH------cC-----CCEEEecHHhhhCCc
Q 023442          108 LRDFPDLTFTLNGGINTVDEVNAALR------KG-----AHHVMVGRAAYQNPW  150 (282)
Q Consensus       108 ~~~~~~ipVi~nGdI~s~eda~~~l~------~g-----~DgVmIGRgal~nP~  150 (282)
                      +|...+|-++..|||-|++|+...+.      .|     .||+.+|.++|.--.
T Consensus       208 lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE  261 (717)
T COG4981         208 LRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE  261 (717)
T ss_pred             HhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence            35567899999999999999999885      22     899999999987543

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=83.23  E-value=7.4  Score=36.45  Aligned_cols=116  Identities=9%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             cccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHh------CCCCEEEEecCCccc
Q 023442           18 GVSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL------SPTRHFIIHSRKALL   85 (282)
Q Consensus        18 Gs~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~------~Gv~~i~VH~Rt~~~   85 (282)
                      -+.|++|-..     +.+.++.+++.. ..+.+.||-+-.+   +.++..+    .+ +      +|+|.|-+---.   
T Consensus       171 d~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~---tleea~e----a~-~~~~~~~agaDiImLDnm~---  239 (308)
T PLN02716        171 DMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETR---TLEEVKE----VL-EYLSDTKTSLTRVMLDNMV---  239 (308)
T ss_pred             ceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEEC---CHHHHHH----HH-HhcccccCCCCEEEeCCCc---
Confidence            3456666542     235555555522 2334455554332   3444332    23 5      899999876531   


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        .+|.+.+.    .-+.+.+.++.. ...|+.++||| |.+.+.++..+|+|.+.+|.--..-|++
T Consensus       240 --~~~~~~~~----~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galthsa~~~  299 (308)
T PLN02716        240 --VPLENGDV----DVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTHSVKAL  299 (308)
T ss_pred             --ccccccCC----CHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCCcc
Confidence              01111000    123343433321 25789999999 8999999999999999999533334543

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=82.87  E-value=1.9  Score=39.11  Aligned_cols=38  Identities=13%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +++|++.|+| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus       203 ~~~IlYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f  241 (250)
T PRK00042        203 KVRILYGGSV-KPDNAAELMAQPDIDGALVGGASL-KAEDF  241 (250)
T ss_pred             CceEEEcCCC-CHHHHHHHhcCCCCCEEEEeeeee-chHHH
Confidence            5899999999 5555555555 9999999999988 55544

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=82.84  E-value=5.6  Score=36.66  Aligned_cols=108  Identities=15%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             ccccccCCHH--HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           17 FGVSLMLDPK--FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        17 yGs~Ll~~p~--~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      +-+.|++|-.  .+..|-++|+.+- ..|.+.||=+-.   ++++++.+    . -++|+|-|-+.--+.          
T Consensus       158 sDavliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv---esle~~~e----A-l~agaDiImLDNm~~----------  219 (280)
T COG0157         158 SDAVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV---ESLEEAEE----A-LEAGADIIMLDNMSP----------  219 (280)
T ss_pred             cceEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc---CCHHHHHH----H-HHcCCCEEEecCCCH----------
Confidence            3456777654  3333444443321 356777775433   34555332    2 379999886654321          


Q ss_pred             CCCCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           94 RTIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                              +.+++.++.   ...+-+-++|+| |++.+..+..+|+|.+.+|.--..-|++
T Consensus       220 --------e~~~~av~~l~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~~l  271 (280)
T COG0157         220 --------EELKEAVKLLGLAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAPAL  271 (280)
T ss_pred             --------HHHHHHHHHhccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCccc
Confidence                    222222221   235667899999 8999999999999999999776777765

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=82.47  E-value=17  Score=29.89  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             HHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 023442           31 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD  110 (282)
Q Consensus        31 iv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~  110 (282)
                      .+..+++..++|+.+.+...-.  ...   ....++.+.++|+|.|.+|+-....           +....+.+.++.+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~  111 (200)
T cd04722          48 VLKEVAAETDLPLGVQLAINDA--AAA---VDIAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREA  111 (200)
T ss_pred             HHHHHHhhcCCcEEEEEccCCc--hhh---hhHHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHh
Confidence            3555555667888887653211  111   1112345678999999999743110           00013445555554


Q ss_pred             CCCceEEEccCC-CCHHHHHHHHHcCCCEEEecHH
Q 023442          111 FPDLTFTLNGGI-NTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       111 ~~~ipVi~nGdI-~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++++||+.--.. ...+++ .+.+.|+|.|++...
T Consensus       112 ~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~~~~  145 (200)
T cd04722         112 VPDVKVVVKLSPTGELAAA-AAEEAGVDEVGLGNG  145 (200)
T ss_pred             cCCceEEEEECCCCccchh-hHHHcCCCEEEEcCC
Confidence            446777654332 222222 134489999998754

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA

Probab=82.30  E-value=20  Score=34.89  Aligned_cols=45  Identities=9%  Similarity=-0.027  Sum_probs=32.4

Q ss_pred             CCCccHHHHHHHHhcCC--CceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           96 IPPLKYEYYYALLRDFP--DLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~--~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      +++-+++...++.+...  ++||.+.=.+.|..++.++++ ..+|.+.
T Consensus       275 ~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~  322 (415)
T cd03324         275 TSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQ  322 (415)
T ss_pred             CCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEE
Confidence            34445666667765432  599977778999999999998 5677764

rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3

Probab=82.17  E-value=15  Score=34.77  Aligned_cols=44  Identities=5%  Similarity=-0.099  Sum_probs=31.7

Q ss_pred             CCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           97 PPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      ++-+++..+++.+.. .++||.+.=.+.|..|+.++++ ..+|.|.
T Consensus       218 ~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~  263 (352)
T cd03328         218 SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQ  263 (352)
T ss_pred             ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEe
Confidence            333456666666542 4699988777899999999999 5577664

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=81.99  E-value=35  Score=30.53  Aligned_cols=37  Identities=14%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++.|-.-||| +.+.+.++.+.|+|.+.+|+++.+++.
T Consensus       179 ~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d  215 (228)
T PRK08091        179 EKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGE  215 (228)
T ss_pred             CceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCC
Confidence            5678899999 688999999999999999998876665

>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]

Probab=81.66  E-value=1.9  Score=34.86  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             ceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          114 LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       114 ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      |+|-.+|.| +++-+.+++..|+|||+++=-=+++
T Consensus        33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~GC~~ge   66 (132)
T COG1908          33 IRVMCSGRV-NPEFVLKALRKGADGVLVAGCKIGE   66 (132)
T ss_pred             EEeeccCcc-CHHHHHHHHHcCCCeEEEecccccc
Confidence            678899997 8899999999999999999544555

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=81.59  E-value=19  Score=30.60  Aligned_cols=89  Identities=9%  Similarity=0.088  Sum_probs=53.4

Q ss_pred             HHHHHHHhhc-CCccEEE--EecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442           29 GEAMSVIAAN-TNVPVSV--KCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        29 ~eiv~~v~~~-~~ipvsv--KiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      .+.++.+++. .++|+.+  |+..   . .+  .    .++.+.++|++.+++|+.+..       +       ..+.+.
T Consensus        41 ~~~i~~i~~~~~~~~i~~~~~v~~---~-~~--~----~~~~~~~aGad~i~~h~~~~~-------~-------~~~~~i   96 (202)
T cd04726          41 MEAVRALREAFPDKIIVADLKTAD---A-GA--L----EAEMAFKAGADIVTVLGAAPL-------S-------TIKKAV   96 (202)
T ss_pred             HHHHHHHHHHCCCCEEEEEEEecc---c-cH--H----HHHHHHhcCCCEEEEEeeCCH-------H-------HHHHHH
Confidence            4567777764 3677766  4331   1 11  1    123456899999999985310       0       012222


Q ss_pred             HHHhcCCCceEEEc-cCCCCHHHHHHHHHcCCCEEEec
Q 023442          106 ALLRDFPDLTFTLN-GGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       106 ~l~~~~~~ipVi~n-GdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+++. +++++.. =+..|++++.+++..|+|.|.++
T Consensus        97 ~~~~~~-g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~  133 (202)
T cd04726          97 KAAKKY-GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH  133 (202)
T ss_pred             HHHHHc-CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence            333432 6666653 56678999988666899999885

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=81.54  E-value=2.3  Score=40.36  Aligned_cols=67  Identities=12%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      +.+.+++.|+..|-+..-.+.  |.+ +.      -+.+.+ +++++.++||||++-|--+++..++.++ |.||+..
T Consensus       446 LtrAcEalGAGEiLLNCiD~D--Gsn-~G------yDieLv-~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL  513 (541)
T KOG0623|consen  446 LTRACEALGAGEILLNCIDCD--GSN-KG------YDIELV-KLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL  513 (541)
T ss_pred             HHHHHHHhCcchheeeeeccC--CCC-CC------cchhHH-HHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence            466788999988887754432  221 11      124555 4556667999999999999999999998 9999643

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=81.52  E-value=32  Score=31.93  Aligned_cols=71  Identities=15%  Similarity=0.255  Sum_probs=50.7

Q ss_pred             HHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~~g~DgVmIG  142 (282)
                      +.+++.|+|+|.|.-.|.  .|.+        -|.++|+.+.++.+. .++|++.-|+=-. .++++++.+.|+.=|=|+
T Consensus       162 ~Fv~~TgvD~LAvaiGt~HG~Y~~--------~p~Ldfd~l~~I~~~-~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~  232 (286)
T PRK12738        162 RFVELTGVDSLAVAIGTAHGLYSK--------TPKIDFQRLAEIREV-VDVPLVLHGASDVPDEFVRRTIELGVTKVNVA  232 (286)
T ss_pred             HHHHHhCCCEEEeccCcccCCCCC--------CCcCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence            345688999999875552  3332        256789999888775 5899998777443 566777777888877777


Q ss_pred             HHh
Q 023442          143 RAA  145 (282)
Q Consensus       143 Rga  145 (282)
                      ..+
T Consensus       233 T~l  235 (286)
T PRK12738        233 TEL  235 (286)
T ss_pred             cHH
Confidence            655

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=81.29  E-value=5.8  Score=30.78  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=39.8

Q ss_pred             HHHhCCCCEEEEecCCc-ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--cCCCEEEecH
Q 023442           67 VSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGR  143 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~-~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGR  143 (282)
                      .+.+...+.|.++.... ....            ..+.+..+++..++++|+..|-..|... +.+++  .|+|.|++|-
T Consensus        46 ~~~~~~pd~V~iS~~~~~~~~~------------~~~l~~~~k~~~p~~~iv~GG~~~t~~~-~~~l~~~~~~D~vv~Ge  112 (121)
T PF02310_consen   46 ALRAERPDVVGISVSMTPNLPE------------AKRLARAIKERNPNIPIVVGGPHATADP-EEILREYPGIDYVVRGE  112 (121)
T ss_dssp             HHHHTTCSEEEEEESSSTHHHH------------HHHHHHHHHTTCTTSEEEEEESSSGHHH-HHHHHHHHTSEEEEEET
T ss_pred             HHhcCCCcEEEEEccCcCcHHH------------HHHHHHHHHhcCCCCEEEEECCchhcCh-HHHhccCcCcceecCCC
Confidence            44567899999987421 1100            0223334444457888888777755443 33443  7999999997


Q ss_pred             H
Q 023442          144 A  144 (282)
Q Consensus       144 g  144 (282)
                      |
T Consensus       113 g  113 (121)
T PF02310_consen  113 G  113 (121)
T ss_dssp             T
T ss_pred             h
Confidence            6

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=81.17  E-value=7.9  Score=35.57  Aligned_cols=77  Identities=9%  Similarity=0.009  Sum_probs=46.3

Q ss_pred             HHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHH----cCCCEE
Q 023442           66 KVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALR----KGAHHV  139 (282)
Q Consensus        66 ~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~----~g~DgV  139 (282)
                      +.+.+ .|++.|.+-|-|......+...       +.+.+...++.. .++|||++=+-.|.+++.++.+    .|||+|
T Consensus        31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eE-------r~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v  103 (293)
T PRK04147         31 RFNIEKQGIDGLYVGGSTGEAFLLSTEE-------KKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAI  103 (293)
T ss_pred             HHHHhcCCCCEEEECCCccccccCCHHH-------HHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            34557 9999999999775433332111       122233333322 2588876444355666655443    799999


Q ss_pred             EecHHhhhCC
Q 023442          140 MVGRAAYQNP  149 (282)
Q Consensus       140 mIGRgal~nP  149 (282)
                      |+--..+..|
T Consensus       104 ~v~~P~y~~~  113 (293)
T PRK04147        104 SAVTPFYYPF  113 (293)
T ss_pred             EEeCCcCCCC
Confidence            9997777666

>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2

Probab=80.70  E-value=20  Score=33.72  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=33.0

Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +++-+++...++.+. .++||.+.=.+.+..++.++++ ..+|.|.+
T Consensus       206 ~~~~d~~~~~~l~~~-~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~  251 (341)
T cd03327         206 LIPDDIEGYAELKKA-TGIPISTGEHEYTVYGFKRLLEGRAVDILQP  251 (341)
T ss_pred             CCccCHHHHHHHHhc-CCCCeEeccCccCHHHHHHHHHcCCCCEEec
Confidence            334456666666654 6899987777899999999998 66777654

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=80.57  E-value=9.4  Score=34.73  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-++.....+...       +.+.+...++.. .++||+ +.|+- |.+++.++.+ 
T Consensus        20 ~~~~~~~i-~~l~~~Gv~gl~v~GstGE~~~lt~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~~~~a~~   90 (284)
T cd00950          20 FDALERLI-EFQIENGTDGLVVCGTTGESPTLSDEE-------HEAVIEAVVEAVNGRVPVIAGTGSN-NTAEAIELTKR   90 (284)
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECCCCcchhhCCHHH-------HHHHHHHHHHHhCCCCcEEeccCCc-cHHHHHHHHHH
Confidence            33444433 345679999999998775433332211       122232333322 257774 56664 4555544443 


Q ss_pred             ---cCCCEEEecHHhhhCC
Q 023442          134 ---KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP  149 (282)
                         .|+|+||+....+..|
T Consensus        91 a~~~G~d~v~~~~P~~~~~  109 (284)
T cd00950          91 AEKAGADAALVVTPYYNKP  109 (284)
T ss_pred             HHHcCCCEEEEcccccCCC
Confidence               7999999997765544

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=80.36  E-value=18  Score=33.32  Aligned_cols=109  Identities=8%  Similarity=0.052  Sum_probs=59.3

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-...-..+.=.++++.+.+.+  ++||.+-+-  -.   +..+.++ .++.+++.|+|++.+.+-.  |...+  + ..
T Consensus        45 GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~--~~---~t~~ai~-~a~~A~~~Gad~v~v~pP~--y~~~~--~-~~  113 (294)
T TIGR02313        45 GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG--AL---NHDETLE-LTKFAEEAGADAAMVIVPY--YNKPN--Q-EA  113 (294)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCcEEEECC--cc---hHHHHHH-HHHHHHHcCCCEEEEcCcc--CCCCC--H-HH
Confidence            4334444444456666665544  478876542  21   2334444 4566789999999998742  11111  1 00


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-E-----ccCCCCHHHHHHHHH--cCCCEEEe
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-L-----NGGINTVDEVNAALR--KGAHHVMV  141 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~-----nGdI~s~eda~~~l~--~g~DgVmI  141 (282)
                          -++++.++++..+++||+ .     .|--.+++.+.++.+  ..+-||=-
T Consensus       114 ----l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~  163 (294)
T TIGR02313       114 ----LYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKE  163 (294)
T ss_pred             ----HHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEe
Confidence                145566666643367765 2     355557777777763  44444433

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=80.24  E-value=39  Score=31.93  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC---EEEEe
Q 023442            3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR---HFIIH   79 (282)
Q Consensus         3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~---~i~VH   79 (282)
                      ++|||.=||      ||.-+.+.+++..+.+     .++||.+++  |..   +++|+...+ ..+.+.|..   .+.+|
T Consensus       107 ~~~v~~~KI------aS~~~~n~pLL~~~A~-----~gkPvilSt--Gma---tl~Ei~~Av-~~i~~~G~~~~~i~llh  169 (329)
T TIGR03569       107 DLGVPRFKI------PSGEITNAPLLKKIAR-----FGKPVILST--GMA---TLEEIEAAV-GVLRDAGTPDSNITLLH  169 (329)
T ss_pred             hcCCCEEEE------CcccccCHHHHHHHHh-----cCCcEEEEC--CCC---CHHHHHHHH-HHHHHcCCCcCcEEEEE
Confidence            567876544      5667889888766654     389999986  442   345554433 455678875   66778


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                      .-+ .  +.++.     ..+++..+..+.+.+ ++||..++=-....-...+...||+
T Consensus       170 C~s-~--YP~~~-----~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~~~~aAvalGA~  218 (329)
T TIGR03569       170 CTT-E--YPAPF-----EDVNLNAMDTLKEAF-DLPVGYSDHTLGIEAPIAAVALGAT  218 (329)
T ss_pred             ECC-C--CCCCc-----ccCCHHHHHHHHHHh-CCCEEECCCCccHHHHHHHHHcCCC
Confidence            632 1  22211     134567777777666 7999886432222222222236776

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=80.14  E-value=16  Score=33.37  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=57.8

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-...-..+.=.++++.+.+.+  ++||.+-+  |  . .+..+.++ .++.+++.|+|++.+..-.  |...+  + +.
T Consensus        43 GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv--~--~-~s~~~~i~-~a~~a~~~Gad~v~v~pP~--y~~~~--~-~~  111 (285)
T TIGR00674        43 GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT--G--S-NATEEAIS-LTKFAEDVGADGFLVVTPY--YNKPT--Q-EG  111 (285)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC--C--C-ccHHHHHH-HHHHHHHcCCCEEEEcCCc--CCCCC--H-HH
Confidence            4333334444455666555544  47887654  2  2 23445554 4667889999999998632  11111  1 00


Q ss_pred             CCCccHHHHHHHHhcCCCceEE------EccCCCCHHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT------LNGGINTVDEVNAALR  133 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi------~nGdI~s~eda~~~l~  133 (282)
                          -++++.++++. .++||+      ..|--.|++.+.++.+
T Consensus       112 ----i~~~~~~i~~~-~~~pi~lYn~P~~tg~~l~~~~l~~L~~  150 (285)
T TIGR00674       112 ----LYQHFKAIAEE-VDLPIILYNVPSRTGVSLYPETVKRLAE  150 (285)
T ss_pred             ----HHHHHHHHHhc-CCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence                14566677664 478875      2566668888888876

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
3b0p_A	350	Trna-Dihydrouridine Synthase From Thermus Thermophi		1e-26
3b0v_C	363	Trna-Dihydrouridine Synthase From Thermus Thermophi		2e-24

>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 119/217 (54%), Gaps = 14/217 (6%)
Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS K A  G +G  L+LD   V E +  +     VPV+VK R+G++  ++Y  L  
Sbjct: 90  NLGCPSEK-AQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQ 148
Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
            +  ++  +  + F++H+R ALL  +S   NR IPPL++++ + L  DFP LTF  NGGI
Sbjct: 149 SVEAMAE-AGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGI 206
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
            +++E    L++    VM+GRA Y++P + L   D  ++G P    +R +V  + + Y  
Sbjct: 207 RSLEEALFHLKR-VDGVMLGRAVYEDP-FVLEEADRRVFGLPRRP-SRLEVARRMRAYLE 263
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
            + + GT     P    V++ +L+ F   P   L++R
Sbjct: 264 EEVLKGTP----PWA--VLRHMLNLFRGRPKGRLWRR 294

>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 14/217 (6%)
Query: 3   SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCD 62
           + GCPS K A  G +G  L+LD   V E +        VPV+VK R+G++  ++Y  L  
Sbjct: 111 NLGCPSEK-AQEGGYGACLLLDLARVREILKAXGEAVRVPVTVKXRLGLEGKETYRGLAQ 169
Query: 63  FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI 122
            + +  + +  + F++H+R ALL  +S   NR IPPL++++ + L  DFP LTF  NGGI
Sbjct: 170 SV-EAXAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGI 227
Query: 123 NTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIY-- 180
            +++E    L++    V +GRA Y++P + L   D  ++G P    +R +V  + + Y  
Sbjct: 228 RSLEEALFHLKR-VDGVXLGRAVYEDP-FVLEEADRRVFGLPRRP-SRLEVARRXRAYLE 284
Query: 181 GDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKR 217
            + + GT     P    V++  L+ F   P   L++R
Sbjct: 285 EEVLKGTP----PWA--VLRHXLNLFRGRPKGRLWRR 315

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	2e-94
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350

 Score =  281 bits (722), Expect = 2e-94
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 12/254 (4%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCPS K    G +G  L+LD   V E +  +     VPV+VK R+G++  ++Y  L   
Sbjct: 91  LGCPSEKA-QEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQS 149

Query: 64  IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
           +  ++  +  + F++H+R ALL  +S   NR IPPL++++ + L  DFP LTF  NGGI 
Sbjct: 150 VEAMAE-AGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIR 207

Query: 124 TVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDA 183
           +++E    L K    VM+GRA Y++P+  L   D  ++G P    +R +V  + + Y + 
Sbjct: 208 SLEEALFHL-KRVDGVMLGRAVYEDPFV-LEEADRRVFGLPRR-PSRLEVARRMRAYLEE 264

Query: 184 ILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRK--ADAAFQTCKTVKSFLEETIVAIP 241
            +            V++ +L+ F   P   L++R      + Q        +EE +    
Sbjct: 265 EVLKGT----PPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLMEEEVGEEG 320

Query: 242 DSVLDSPIEEAPRG 255
           +     P  +    
Sbjct: 321 EKEKPGPRGQREAA 334

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318

 Score = 71.4 bits (176), Expect = 2e-14
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCP  KV   G  G +L+ D +     +  +  + +   SVK R+G +  +   ++   
Sbjct: 91  AGCPVRKVVKEGA-GGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEK-NEVEEIYRI 148

Query: 64  IYK--VSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN 119
           + +  V  +       IH  +      G   AE + +  L+        +  P     ++
Sbjct: 149 LVEEGVDEVF------IHTRTVVQSFTG--RAEWKALSVLE--------KRIP---TFVS 189

Query: 120 GGINTVDEVNAALRK-GAHHVMVGRAAYQNPW 150
           G I T ++   AL + G   ++V R A   PW
Sbjct: 190 GDIFTPEDAKRALEESGCDGLLVARGAIGRPW 221

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 42/280 (15%), Positives = 73/280 (26%), Gaps = 76/280 (27%)

Query: 26  KFVGEAMSVIAANTN-----VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS 80
           KFV E +       N      P+  + R        Y +  D +Y  + +    +    S
Sbjct: 81  KFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---S 132

Query: 81  RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GI-NTVDEVNAALRKGAH 137
           R      +     R           ALL   P     ++G  G   T             
Sbjct: 133 RLQPYLKL-----RQ----------ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKV 176

Query: 138 HVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTR-----RQVVEKYQIYGDAILGTYGNNR 192
              +    +   W  L + ++     P + L        Q+   +    D       N +
Sbjct: 177 QCKMDFKIF---WLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSS----NIK 224

Query: 193 PHVRDVMKPLLHFFHSEPG-NGLF-------KRKADAAFQ-TCKTV-----KSFLEETIV 238
             +  +   L     S+P  N L         +  + AF  +CK +     K     T  
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQV---TDF 280

Query: 239 AIPDSVLDSPIEEAPRG-----REDLFADVHDL----LPP 269
               +     ++           + L     D     LP 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	100.0
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	100.0
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	99.89
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	99.88
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	99.86
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	99.84
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	99.84
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	99.83
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	99.83
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	99.82
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	99.82
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	99.81
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	99.8
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	99.8
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	99.8
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	99.8
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	99.8
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	99.79
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	99.79
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	99.77
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.77
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	99.77
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	99.76
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	99.75
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	99.75
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	99.73
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.7
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.7
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.69
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	99.65
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	99.62
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.57
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.55
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.55
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.55
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	99.54
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.52
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.48
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	99.48
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	99.48
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.47
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.44
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.44
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.41
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.4
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.33
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.31
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.31
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	99.29
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.28
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.21
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	99.17
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.16
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	99.13
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.12
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.08
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.03
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.03
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	98.98
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	98.95
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.94
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.9
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	98.89
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	98.88
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	98.86
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.81
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	98.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.77
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.73
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	98.72
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	98.68
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.67
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	98.64
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.62
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.62
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	98.61
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.59
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.57
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.54
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	98.52
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	98.5
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.47
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.46
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.41
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	98.38
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.36
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.35
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	98.32
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	98.32
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.31
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.27
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	98.24
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.13
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.11
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.06
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	98.05
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.04
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	98.03
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.0
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.99
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	97.97
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.95
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	97.92
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	97.79
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	97.78
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	97.77
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	97.77
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	97.76
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	97.76
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	97.71
3oa3_A	288	Aldolase; structural genomics, seattle structural	97.69
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	97.69
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	97.68
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	97.68
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	97.63
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	97.63
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	97.61
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.59
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	97.58
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	97.58
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	97.57
2poz_A	392	Putative dehydratase; octamer, structural genomics	97.57
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	97.55
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	97.55
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	97.51
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	97.5
2gl5_A	410	Putative dehydratase protein; structural genomics,	97.49
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	97.49
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	97.48
1viz_A	240	PCRB protein homolog; structural genomics, unknown	97.46
2qgy_A	391	Enolase from the environmental genome shotgun sequ	97.44
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	97.38
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	97.36
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	97.33
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	97.28
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	97.27
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	97.26
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	97.26
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	97.26
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	97.24
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	97.21
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	97.18
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	97.17
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	97.16
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.13
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	97.12
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.11
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	97.09
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	97.08
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	97.07
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	97.06
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	97.04
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	97.04
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	97.03
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	97.01
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	97.01
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	97.01
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	96.99
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	96.97
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	96.97
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.94
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	96.94
2o56_A	407	Putative mandelate racemase; dehydratase, structur	96.94
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	96.93
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	96.93
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	96.91
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	96.86
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	96.84
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	96.83
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	96.82
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.81
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	96.79
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	96.79
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	96.77
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	96.76
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	96.68
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	96.66
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.65
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	96.65
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.65
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	96.64
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.64
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	96.61
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	96.61
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	96.6
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.59
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.57
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	96.56
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	96.5
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	96.48
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.48
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	96.46
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	96.43
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	96.43
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.43
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	96.41
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	96.41
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	96.4
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	96.4
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	96.39
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	96.38
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	96.34
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	96.33
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.32
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	96.3
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	96.29
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	96.26
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	96.21
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.18
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	96.17
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	96.16
3tcs_A	388	Racemase, putative; PSI-biology, nysgrc, structura	96.11
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	96.1
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.07
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	96.05
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	96.04
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.02
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	96.01
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	95.96
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	95.95
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	95.93
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	95.89
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.85
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	95.83
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	95.81
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	95.81
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	95.79
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	95.74
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	95.73
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	95.7
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	95.65
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	95.64
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	95.61
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.55
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	95.51
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	95.49
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	95.49
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	95.39
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	95.31
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.27
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	95.18
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	95.14
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.14
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	95.1
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.08
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	95.01
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	94.94
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	94.94
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	94.93
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	94.91
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	94.9
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	94.81
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	94.76
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	94.59
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.53
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	94.52
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	94.47
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.31
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	94.27
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.25
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	94.18
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	94.13
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	94.03
3fv9_G	386	Mandelate racemase/muconate lactonizing enzyme; st	94.02
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	94.0
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	93.99
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	93.95
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	93.94
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	93.9
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	93.88
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	93.85
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	93.49
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.41
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	93.41
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	93.04
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	93.02
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	92.96
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	92.95
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	92.95
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	92.9
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	92.88
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	92.84
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	92.59
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	92.57
3ik4_A	365	Mandelate racemase/muconate lactonizing protein; s	92.3
4hnl_A	421	Mandelate racemase/muconate lactonizing enzyme; de	92.24
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	92.18
4e8g_A	391	Enolase, mandelate racemase/muconate lactonizing e	92.18
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	92.07
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	92.0
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	91.96
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	91.8
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	91.77
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	91.64
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	91.53
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	91.5
4a35_A	441	Mitochondrial enolase superfamily member 1; isomer	91.48
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	91.26
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	91.18
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	91.14
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	91.12
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	91.02
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	90.59
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	90.54
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	90.54
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	90.16
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	90.1
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	90.07
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	89.86
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	89.76
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	89.74
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	89.24
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	89.09
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	89.07
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	89.05
2chr_A	370	Chloromuconate cycloisomerase; 3.00A {Cupriavidus	88.95
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	88.42
1wuf_A	393	Hypothetical protein LIN2664; structural genomics,	88.36
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	88.32
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	88.13
4hpn_A	378	Putative uncharacterized protein; enolase, enzyme	88.12
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	87.75
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	87.73
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	86.91
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	86.84
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	86.79
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	86.74
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	86.74
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	86.53
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	86.42
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	86.41
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	86.28
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	86.19
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	86.09
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	86.06
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	85.97
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	85.92
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	85.85
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	85.68
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	85.6
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	85.49
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	85.41
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	85.23
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	85.11
2pge_A	377	MENC; OSBS, NYSGXRC, PSI-II, structural genomics,	84.99
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	84.99
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	84.77
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	84.47
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	84.41
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	84.4
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	84.39
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	84.33
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	84.18
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	84.17
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	84.15
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	84.04
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	83.95
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	83.94
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	83.78
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	83.73
3tqp_A	428	Enolase; energy metabolism, lyase; 2.20A {Coxiella	83.61
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	83.52
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	83.28
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	83.26
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	83.25
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	83.24
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	83.22
1yya_A	250	Triosephosphate isomerase; riken structural genomi	83.22
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	83.11
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	83.01
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	82.86
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	82.8
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	82.78
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	82.74
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	82.49
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	82.36
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	82.2
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	82.11
2nwr_A	267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	82.11
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	82.04
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	81.98
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	81.8
4h1z_A	412	Enolase Q92ZS5; dehydratase, magnesium binding sit	81.74
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	81.54
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	81.51
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	81.49
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	81.41
1wue_A	386	Mandelate racemase/muconate lactonizing enzyme FA	81.34
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	81.28
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	81.04
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	81.02
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	81.0
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	80.99
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	80.91
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	80.9
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	80.76
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	80.59
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	80.57
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	80.41
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	80.41
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	80.34
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	80.32
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	80.23
3fxg_A	455	Rhamnonate dehydratase; structural gemomics, enola	80.16
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	80.09
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	80.02
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	80.01

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=100.00  E-value=3.9e-41  Score=316.02  Aligned_cols=228  Identities=29%  Similarity=0.548  Sum_probs=188.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||++++.+ ++||++|+++++++.+|++++++++++||++|+|+||++..+.+++.+ +++.++++|+++|+||+|
T Consensus        89 In~gcP~~~~~~-d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~-~a~~l~~aG~d~I~V~~r  166 (350)
T 3b0p_A           89 LNLGCPSEKAQE-GGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQ-SVEAMAEAGVKVFVVHAR  166 (350)
T ss_dssp             EEECCCSHHHHH-TTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHH-HHHHHHHTTCCEEEEECS
T ss_pred             ECCcCCCCcCcC-CCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHH-HHHHHHHcCCCEEEEecC
Confidence            799999998885 558999999999999999999999999999999999998655545554 456788999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIY  161 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~  161 (282)
                      +... |.++..++.+++..|+.+.++++..+++|||+||||.|++|+.++++ |||+|||||+++.|||+| .++...++
T Consensus       167 ~~~~-g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~-~~i~~~l~  243 (350)
T 3b0p_A          167 SALL-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVL-EEADRRVF  243 (350)
T ss_dssp             CBC-----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGG-TTHHHHTT
T ss_pred             chhc-ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHH-HHHHHHhc
Confidence            8643 43333334456778999999988755899999999999999999998 999999999999999996 77776666


Q ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHhC
Q 023442          162 GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI  240 (282)
Q Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~  240 (282)
                      | +.+++++.++++.+++|++.+++ +|+   .++.+|||+.||++++|+++.||+.+++. .+.+.+.+.++++....
T Consensus       244 ~-~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~~~kh~~~~~~g~~~~~~~r~~l~~~-~~~~~~~~~l~~~~~~~  316 (350)
T 3b0p_A          244 G-LPRRPSRLEVARRMRAYLEEEVL-KGT---PPWAVLRHMLNLFRGRPKGRLWRRLLSEG-RSLQALDRALRLMEEEV  316 (350)
T ss_dssp             C-CSCCCCHHHHHHHHHHHHHHHHH-HTC---CHHHHHTTSTTTTTTSTTHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHH-cCc---cHHHHHHHHHHHHccCCCHHHHHHHHHCC-CCHHHHHHHHHHHhhhc
Confidence            6 44556888999999999988776 575   47899999999999999999999999765 67888888887765444

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=100.00  E-value=1.1e-38  Score=295.40  Aligned_cols=219  Identities=20%  Similarity=0.331  Sum_probs=180.1

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||++++.+ ++||++|+++|+++.++++++++++++||+||+|.||+..+.. +    +++.++++|+++|+||+|
T Consensus        89 in~gcP~~~~r~-~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~-~----~a~~l~~~G~d~i~v~g~  162 (318)
T 1vhn_A           89 LNAGCPVRKVVK-EGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVE-E----IYRILVEEGVDEVFIHTR  162 (318)
T ss_dssp             EEECCCCHHHHH-TTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHH-H----HHHHHHHTTCCEEEEESS
T ss_pred             EECCCCcHhcCC-CCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHH-H----HHHHHHHhCCCEEEEcCC
Confidence            799999998875 5589999999999999999999999999999999999875433 3    355678999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      ++.. +.++       +..|+.+.++++   ++|||+||||+|++|+.++++ +|||+|||||+++.|||+| ..+...+
T Consensus       163 ~~~~-~~~~-------~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~-~~~~~~~  230 (318)
T 1vhn_A          163 TVVQ-SFTG-------RAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF-KQIKDFL  230 (318)
T ss_dssp             CTTT-TTSS-------CCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHH-HHHHHHH
T ss_pred             Cccc-cCCC-------CcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchH-HHHHHHH
Confidence            8632 2211       123555544433   899999999999999999999 8999999999999999996 6666544


Q ss_pred             h-CCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 023442          161 Y-GAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVA  239 (282)
Q Consensus       161 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~  239 (282)
                      . | +.++.++.++++.+.+|++...+++|. ...+..+|||+.||+++++++++||+++++. .+.+++.+++++++.+
T Consensus       231 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~  307 (318)
T 1vhn_A          231 RSG-KYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREKVMKI-EEVQILKEMFYNFIKE  307 (318)
T ss_dssp             HHS-CCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTTTCTTHHHHHHHHTTC-CCHHHHHHHHHHHHHH
T ss_pred             hCC-CCCCCCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHhcCCChHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence            4 6 434457788889999999988888986 5588999999999999999999999999654 7788888888887765


Q ss_pred             CC
Q 023442          240 IP  241 (282)
Q Consensus       240 ~~  241 (282)
                      ..
T Consensus       308 ~~  309 (318)
T 1vhn_A          308 VE  309 (318)
T ss_dssp             HC
T ss_pred             cc
Confidence            43

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=99.89  E-value=1.7e-23  Score=196.27  Aligned_cols=140  Identities=17%  Similarity=0.194  Sum_probs=112.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEEe-
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIH-   79 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G-v~~i~VH-   79 (282)
                      ||+|||+.+    |  |.+|+.+|+.+.+++++|++.+++||+||+|.+++.    .++.+ ++++++++| +|+|++| 
T Consensus       161 lNisCPn~~----g--g~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~----~~~~~-~a~~~~~~Gg~d~I~~~N  229 (354)
T 4ef8_A          161 LNLSCPNVP----G--KPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDF----AHFDA-AAEILNEFPKVQFITCIN  229 (354)
T ss_dssp             EECSSCCST----T--SCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSH----HHHHH-HHHHHHTCTTEEEEEECC
T ss_pred             EeCCCCCCC----C--chhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCH----HHHHH-HHHHHHhCCCccEEEEec
Confidence            899999852    3  688999999999999999999999999999998853    33433 345677898 9999864 


Q ss_pred             -----------cCCc------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           80 -----------SRKA------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        80 -----------~Rt~------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                                 +|+.      .+.|.|+   ..++|..|+.++++++..+++|||+||||+|.+|+.+++..|||+||||
T Consensus       230 T~~~g~~idi~~~~~~~~~~~~~gGlSG---~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg  306 (354)
T 4ef8_A          230 SIGNGLVIDAETESVVIKPKQGFGGLGG---RYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG  306 (354)
T ss_dssp             CEEEEECEETTTTEESCSGGGGEEEEEG---GGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred             ccCcceeeeccCCccccccccccCCCCC---CCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence                       3331      1233332   2455677999999988755899999999999999999999999999999


Q ss_pred             HHhhhC-Cccchhhh
Q 023442          143 RAAYQN-PWYTLGHV  156 (282)
Q Consensus       143 Rgal~n-P~if~~~~  156 (282)
                      |+++.| ||+| .++
T Consensus       307 ra~l~~GP~~~-~~i  320 (354)
T 4ef8_A          307 TALQEEGPSIF-ERL  320 (354)
T ss_dssp             HHHHHHCTTHH-HHH
T ss_pred             HHHHHhCHHHH-HHH
Confidence            999999 9986 443

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=99.88  E-value=2e-22  Score=189.92  Aligned_cols=139  Identities=16%  Similarity=0.177  Sum_probs=108.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc-------CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-------TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~-------~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~   74 (282)
                      ||+|||+.+       |..++++++.+.+++++|+++       +++||+||+|.++++    +++.+ +++.++++|+|
T Consensus       182 lNisCPn~~-------G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~----~~~~~-ia~~~~~aGad  249 (367)
T 3zwt_A          182 VNVSSPNTA-------GLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS----QDKED-IASVVKELGID  249 (367)
T ss_dssp             EECCCTTST-------TGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH----HHHHH-HHHHHHHHTCC
T ss_pred             EECCCCCCC-------CccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCH----HHHHH-HHHHHHHcCCC
Confidence            899999853       334789999999999999864       689999999998764    23332 46678899999


Q ss_pred             EEEEecCCccc------------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           75 HFIIHSRKALL------------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        75 ~i~VH~Rt~~~------------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +|++|+++...            .|.++   ..+.|..++.++++++... ++|||+||||.|++|+.++++.|||+||+
T Consensus       250 gi~v~ntt~~r~~~~~~~~~~~~gGlSG---~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~v  326 (367)
T 3zwt_A          250 GLIVTNTTVSRPAGLQGALRSETGGLSG---KPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQL  326 (367)
T ss_dssp             EEEECCCBSCCCTTCCCTTTTSSSEEEE---GGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             EEEEeCCCcccccccccccccccCCcCC---cccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            99999887311            12221   2234556788888887654 79999999999999999999999999999


Q ss_pred             cHHh-hhCCccchhhh
Q 023442          142 GRAA-YQNPWYTLGHV  156 (282)
Q Consensus       142 GRga-l~nP~if~~~~  156 (282)
                      ||++ +.+||+| .++
T Consensus       327 gra~l~~gP~~~-~~i  341 (367)
T 3zwt_A          327 YTALTFWGPPVV-GKV  341 (367)
T ss_dssp             SHHHHHHCTHHH-HHH
T ss_pred             CHHHHhcCcHHH-HHH
Confidence            9999 5689986 443

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=99.86  E-value=2.7e-22  Score=187.48  Aligned_cols=134  Identities=16%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE-----
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF-----   76 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i-----   76 (282)
                      ||+|||+.+    |  |++|+++|+.+.+|+++|++.+++||+||+|.++    +..+++    ++++++|++.|     
T Consensus       161 lNisCPn~~----G--~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~----~~~~~a----~~~~~aga~~i~~int  226 (345)
T 3oix_A          161 LNLSCPNVP----G--XPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYF----DIVHFD----QAAAIFNXYPLTFVNC  226 (345)
T ss_dssp             EECSCCCST----T--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCC----CHHHHH----HHHHHHTTSCCSEEEE
T ss_pred             EecCCCCcC----C--chhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCC----CHHHHH----HHHHHhCCCceEEEEe
Confidence            799999853    3  6889999999999999999999999999999874    234443    34455555544     


Q ss_pred             --------EEecCCcc------cCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           77 --------IIHSRKAL------LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        77 --------~VH~Rt~~------~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                              ++|.|+..      +.|.|+   ..+.|+.|+.++++++... ++|||+||||.|++|+.++++.|||+|||
T Consensus       227 ~nt~g~~~~i~~~~~~~~~~~~~gGlSG---~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~i  303 (345)
T 3oix_A          227 INSIGNGLVIEDETVVIXPKNGFGGIGG---DYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQI  303 (345)
T ss_dssp             CCCEEEEECEETTEESCSGGGGEEEEEE---GGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             ecccccceeeccCccccccccccCCcCC---ccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEE
Confidence                    35655422      223322   2344556888988887654 79999999999999999999999999999


Q ss_pred             cHH-hhhCCccc
Q 023442          142 GRA-AYQNPWYT  152 (282)
Q Consensus       142 GRg-al~nP~if  152 (282)
                      ||+ ++.+||+|
T Consensus       304 gra~~~~gP~~~  315 (345)
T 3oix_A          304 GTALHQEGPQIF  315 (345)
T ss_dssp             SHHHHHHCTHHH
T ss_pred             ChHHHhcChHHH
Confidence            999 89999986

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=99.84  E-value=6e-21  Score=181.72  Aligned_cols=136  Identities=14%  Similarity=0.130  Sum_probs=101.8

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc--------------------CCcc-EEEEecCCCCCCCcHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN--------------------TNVP-VSVKCRIGVDDHDSYNQL   60 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~--------------------~~ip-vsvKiR~G~d~~~~~~e~   60 (282)
                      ||+|||+.+       |..++++++.+.+++++|++.                    .++| |+||+|.++++.    ++
T Consensus       217 iNiScPNt~-------Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~----~i  285 (415)
T 3i65_A          217 INVSSPNTP-------GLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQE----QK  285 (415)
T ss_dssp             EECCCCC---------------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHH----HH
T ss_pred             EECCCCCCC-------CcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHH----HH
Confidence            899999842       677999999999999999876                    2689 999999988652    22


Q ss_pred             HHHHHHHHHhCCCCEEEEecCCccc----------CCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHH
Q 023442           61 CDFIYKVSSLSPTRHFIIHSRKALL----------NGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVN  129 (282)
Q Consensus        61 ~~~v~~~le~~Gv~~i~VH~Rt~~~----------~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~  129 (282)
                      . .+++.++++|+|.|++|.++...          .|.++   ..+.|..++.++++.+... ++|||++|||.|.+|+.
T Consensus       286 ~-~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG---~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~  361 (415)
T 3i65_A          286 K-EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDAL  361 (415)
T ss_dssp             H-HHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEE---GGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHH
T ss_pred             H-HHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCC---ccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence            2 24667889999999999887421          12211   1222444677888877643 79999999999999999


Q ss_pred             HHHHcCCCEEEecHHhhhC-Cccc
Q 023442          130 AALRKGAHHVMVGRAAYQN-PWYT  152 (282)
Q Consensus       130 ~~l~~g~DgVmIGRgal~n-P~if  152 (282)
                      +++..|||+|||||+++.+ ||+|
T Consensus       362 e~l~aGAd~VqIgra~l~~GP~~~  385 (415)
T 3i65_A          362 EKIEAGASVCQLYSCLVFNGMKSA  385 (415)
T ss_dssp             HHHHHTEEEEEESHHHHHHGGGHH
T ss_pred             HHHHcCCCEEEEcHHHHhcCHHHH
Confidence            9999999999999999887 9986

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=99.84  E-value=3.8e-20  Score=172.74  Aligned_cols=147  Identities=16%  Similarity=0.162  Sum_probs=111.1

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCC--CCCcHHHHHHHHHHHHHh
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD--DHDSYNQLCDFIYKVSSL   70 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d--~~~~~~e~~~~v~~~le~   70 (282)
                      ||+||         |... .+++.||++|++|++++.+|+++|++++++||+||++....  ...+.++..+ +++.+++
T Consensus       163 ih~a~GyLl~qFlsp~~N-~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~-la~~L~~  240 (340)
T 3gr7_A          163 IHAAHGYLINEFLSPLSN-RRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVP-YAKRMKE  240 (340)
T ss_dssp             EEECTTCHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHH-HHHHHHH
T ss_pred             EccccchHHHHcCCCccC-cCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHH-HHHHHHH
Confidence            68885         8643 34688999999999999999999999999999999997410  0112233333 5677899


Q ss_pred             CCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhhhC
Q 023442           71 SPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQN  148 (282)
Q Consensus        71 ~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal~n  148 (282)
                      +|+|+|+||. ++.....      ..-+...++.+.++++. .++|||+||+|.|+++++++++.| ||+||+||+++.|
T Consensus       241 ~Gvd~i~vs~g~~~~~~~------~~~~~~~~~~~~~ik~~-~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lan  313 (340)
T 3gr7_A          241 QGVDLVDVSSGAIVPARM------NVYPGYQVPFAELIRRE-ADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRN  313 (340)
T ss_dssp             TTCCEEEEECCCSSCCCC------CCCTTTTHHHHHHHHHH-TTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHC
T ss_pred             cCCCEEEEecCCccCCCC------CCCccccHHHHHHHHHH-cCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhC
Confidence            9999999995 3321100      01122347777777765 489999999999999999999955 9999999999999


Q ss_pred             CccchhhhHh
Q 023442          149 PWYTLGHVDT  158 (282)
Q Consensus       149 P~if~~~~~~  158 (282)
                      |+++ ..+..
T Consensus       314 Pdl~-~ki~~  322 (340)
T 3gr7_A          314 PYWP-YAAAR  322 (340)
T ss_dssp             TTHH-HHHHH
T ss_pred             chHH-HHHHH
Confidence            9986 55554

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=99.83  E-value=2e-20  Score=171.83  Aligned_cols=140  Identities=18%  Similarity=0.194  Sum_probs=108.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+.    ++  |..+..+++.+.++++++++.+++||++|++.+++.    +++.+ +++.++++|+|+|++|++
T Consensus       126 in~~~P~~----~g--~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~----~~~~~-~a~~~~~~G~d~i~v~~~  194 (311)
T 1jub_A          126 LNLSCPNV----PG--EPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL----VHFDI-MAEILNQFPLTYVNSVNS  194 (311)
T ss_dssp             EESCCCCS----SS--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH----HHHHH-HHHHHTTSCCCEEEECCC
T ss_pred             EeccCCCC----CC--cccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCH----HHHHH-HHHHHHHcCCcEEEecCC
Confidence            79999984    22  677778999999999999999999999999988743    23333 456788999999999987


Q ss_pred             Cc----c--------------cCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           82 KA----L--------------LNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        82 t~----~--------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.    .              ..|.+   +..+.|..++.++++++... ++|||++|||.|++|+.++++.|||+||+|
T Consensus       195 ~~~g~~i~~~~~~~~~~~~~~~gG~s---g~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg  271 (311)
T 1jub_A          195 IGNGLFIDPEAESVVIKPKDGFGGIG---GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIG  271 (311)
T ss_dssp             EEEEECEETTTTEESCSGGGGEEEEE---SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CCcCceeccCCCCcccccCCCCCccc---cccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            51    0              01111   11122345777888876532 899999999999999999999999999999


Q ss_pred             HHhhh-CCccchhhh
Q 023442          143 RAAYQ-NPWYTLGHV  156 (282)
Q Consensus       143 Rgal~-nP~if~~~~  156 (282)
                      |+++. +||+| .++
T Consensus       272 ~~~l~~~p~~~-~~i  285 (311)
T 1jub_A          272 TALHKEGPAIF-DRI  285 (311)
T ss_dssp             HHHHHHCTHHH-HHH
T ss_pred             hHHHhcCcHHH-HHH
Confidence            99996 99986 443

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=99.83  E-value=5.2e-20  Score=171.60  Aligned_cols=148  Identities=14%  Similarity=0.152  Sum_probs=112.4

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCC-C-CCcHHHHHHHHHHHHHh
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVD-D-HDSYNQLCDFIYKVSSL   70 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d-~-~~~~~e~~~~v~~~le~   70 (282)
                      ||+||         |... .+++.||++|+++++++.+|+++|++++++||+||++.... + ..+.++..+ +++.+++
T Consensus       163 ih~~~gyLl~qFlsp~~n-~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~-~a~~l~~  240 (338)
T 1z41_A          163 IHAAHGYLIHEFLSPLSN-HRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIG-FAKWMKE  240 (338)
T ss_dssp             EEECTTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHH-HHHHHHH
T ss_pred             eccccchHHHHccCCCcC-CcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHH-HHHHHHH
Confidence            68887         7632 34678999999999999999999999999999999997311 0 112344443 5677899


Q ss_pred             CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhhhCC
Q 023442           71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP  149 (282)
Q Consensus        71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal~nP  149 (282)
                      +|+++|+||+++...... +    .-+...++.+.++++. .++||++||+|+|+++++++++.| ||+||+||+++.||
T Consensus       241 ~Gvd~i~v~~~~~~~~~~-~----~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nP  314 (338)
T 1z41_A          241 QGVDLIDCSSGALVHADI-N----VFPGYQVSFAEKIREQ-ADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDP  314 (338)
T ss_dssp             TTCCEEEEECCCSSCCCC-C----CCTTTTHHHHHHHHHH-HCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCT
T ss_pred             cCCCEEEEecCccccCCC-C----CCccchHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCc
Confidence            999999999986321100 0    0112346777777665 489999999999999999999955 99999999999999


Q ss_pred             ccchhhhHh
Q 023442          150 WYTLGHVDT  158 (282)
Q Consensus       150 ~if~~~~~~  158 (282)
                      +++ ..+..
T Consensus       315 dl~-~ki~~  322 (338)
T 1z41_A          315 FFA-RTAAK  322 (338)
T ss_dssp             THH-HHHHH
T ss_pred             hHH-HHHHc
Confidence            986 55544

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=99.82  E-value=2.1e-20  Score=171.99  Aligned_cols=140  Identities=19%  Similarity=0.214  Sum_probs=108.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEEec
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHS   80 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G-v~~i~VH~   80 (282)
                      ||++||+.    ++  |..+..+++.+.++++++++.+++||+||++.+++.    +++.+ +++.++++| +|+|++|+
T Consensus       128 in~~~P~~----~g--~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~----~~~~~-~a~~~~~aG~~d~i~v~~  196 (314)
T 2e6f_A          128 LNLSCPNV----PG--KPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDI----AHFDT-AAAVLNEFPLVKFVTCVN  196 (314)
T ss_dssp             EECCCCCS----TT--CCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCCCH----HHHHH-HHHHHHTCTTEEEEEECC
T ss_pred             EEcCCCCC----CC--chhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCCCH----HHHHH-HHHHHHhcCCceEEEEeC
Confidence            79999984    22  567778999999999999999999999999988742    23333 456778999 99999998


Q ss_pred             CCcc---c---------------CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           81 RKAL---L---------------NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        81 Rt~~---~---------------~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++..   .               .|.+   ...+.|..++.++++++..+++|||++|||.|++|+.+++..|||+||+|
T Consensus       197 ~~~~~~~i~~~~~~~~~~~~~~~gG~s---g~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ig  273 (314)
T 2e6f_A          197 SVGNGLVIDAESESVVIKPKQGFGGLG---GKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVG  273 (314)
T ss_dssp             CEEEEECEETTTTEESCCGGGGEEEEE---SGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred             CCCccccccCCCCCcccccCcCCCccC---cccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            7620   0               0111   11122345778888877645899999999999999999999999999999


Q ss_pred             HHhhh-CCccchhhh
Q 023442          143 RAAYQ-NPWYTLGHV  156 (282)
Q Consensus       143 Rgal~-nP~if~~~~  156 (282)
                      |+++. +||+| ..+
T Consensus       274 ~~~l~~~p~~~-~~i  287 (314)
T 2e6f_A          274 TALQEEGPGIF-TRL  287 (314)
T ss_dssp             HHHHHHCTTHH-HHH
T ss_pred             hhhHhcCcHHH-HHH
Confidence            99996 99986 443

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=99.82  E-value=4e-20  Score=171.77  Aligned_cols=143  Identities=15%  Similarity=0.156  Sum_probs=105.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC---------CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT---------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP   72 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~---------~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G   72 (282)
                      ||++||+..       |..++++++++.+++++|++.+         ++||+||++.+++.    +++.+ +++.++++|
T Consensus       171 in~~sP~~~-------g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~----~~~~~-~a~~l~~~G  238 (336)
T 1f76_A          171 INISSPNTP-------GLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSE----EELIQ-VADSLVRHN  238 (336)
T ss_dssp             EECCCSSST-------TGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCH----HHHHH-HHHHHHHTT
T ss_pred             EEccCCCCC-------CcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCH----HHHHH-HHHHHHHcC
Confidence            799999731       3446778999999999999988         89999999987653    23333 466788999


Q ss_pred             CCEEEEecCCcccCCCC------cC---CcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           73 TRHFIIHSRKALLNGIS------PA---ENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        73 v~~i~VH~Rt~~~~G~~------~a---d~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +|+|+||+++.......      ..   ....+.+..++.+.++++... ++|||++|||.|++|+.++++.|||+||+|
T Consensus       239 vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~ig  318 (336)
T 1f76_A          239 IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY  318 (336)
T ss_dssp             CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             CcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEee
Confidence            99999998763111100      00   000111223566667766533 799999999999999999999999999999


Q ss_pred             HHhhh-CCccchhhhH
Q 023442          143 RAAYQ-NPWYTLGHVD  157 (282)
Q Consensus       143 Rgal~-nP~if~~~~~  157 (282)
                      |+++. |||+| ..+.
T Consensus       319 r~~l~~~P~~~-~~i~  333 (336)
T 1f76_A          319 SGFIFKGPPLI-KEIV  333 (336)
T ss_dssp             HHHHHHCHHHH-HHHH
T ss_pred             HHHHhcCcHHH-HHHH
Confidence            99998 99986 5543

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=99.81  E-value=3.6e-19  Score=167.61  Aligned_cols=141  Identities=11%  Similarity=0.095  Sum_probs=109.6

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCC--CCC----CCcHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG--VDD----HDSYNQLCDFIY   65 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G--~d~----~~~~~e~~~~v~   65 (282)
                      ||+||         |... .+++.||++++++++++.+|+++|+++++ .||+||++.+  |++    ..+.++..+ ++
T Consensus       180 ih~a~GyLl~qFlsp~~N-~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~-~a  257 (364)
T 1vyr_A          180 LHSAHGYLLHQFLSPSSN-QRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALY-LI  257 (364)
T ss_dssp             EEECTTSHHHHHHCTTTC-CCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHH-HH
T ss_pred             EcCccchHHHhccCCccc-ccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHH-HH
Confidence            68887         6532 24578999999999999999999999984 3999999986  432    223444443 57


Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA  144 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRg  144 (282)
                      +.++++|+++|++|+|+.. .+         ++..++.+.++++. .++|||+||+| |+++++++++ .+||+||+||+
T Consensus       258 ~~l~~~G~d~i~v~~~~~~-~~---------~~~~~~~~~~v~~~-~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~  325 (364)
T 1vyr_A          258 EELAKRGIAYLHMSETDLA-GG---------KPYSEAFRQKVRER-FHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRD  325 (364)
T ss_dssp             HHHHHTTCSEEEEECCBTT-BC---------CCCCHHHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHH
T ss_pred             HHHHHhCCCEEEEecCccc-CC---------CcccHHHHHHHHHH-CCCCEEEECCc-CHHHHHHHHHCCCccEEEECHH
Confidence            7889999999999997632 11         11236777777665 58999999999 9999999999 55999999999


Q ss_pred             hhhCCccchhhhH
Q 023442          145 AYQNPWYTLGHVD  157 (282)
Q Consensus       145 al~nP~if~~~~~  157 (282)
                      ++.|||++ ..+.
T Consensus       326 ~l~~P~~~-~~~~  337 (364)
T 1vyr_A          326 YIANPDLV-ARLQ  337 (364)
T ss_dssp             HHHCTTHH-HHHH
T ss_pred             HHhChhHH-HHHH
Confidence            99999986 5544

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=99.80  E-value=3.1e-19  Score=168.73  Aligned_cols=142  Identities=12%  Similarity=0.054  Sum_probs=107.7

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCC-CC----CCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-VD----DHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G-~d----~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++|+++++++.+|+++|+++++ .||+||+|.+ +.    +..+.++.. .+++
T Consensus       185 Ih~a~GYLl~QFlsp~~N-~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~-~la~  262 (377)
T 2r14_A          185 VHAANACLPNQFLATGTN-RRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAF-YLAG  262 (377)
T ss_dssp             EEECTTCHHHHHHSTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHH-HHHH
T ss_pred             EcCcccchHHhccCCccc-cCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHH-HHHH
Confidence            78887         8643 34678999999999999999999999985 3999999974 21    112344444 3577


Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .++++|+++|+||+|+.. ...  . .   .  .|+.+.++++. .++|||+||+| ++++++++++ .+||+||+||++
T Consensus       263 ~le~~Gvd~i~v~~~~~~-~~~--~-~---~--~~~~~~~ik~~-~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~  331 (377)
T 2r14_A          263 ELDRRGLAYLHFNEPDWI-GGD--I-T---Y--PEGFREQMRQR-FKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPF  331 (377)
T ss_dssp             HHHHTTCSEEEEECCC----------C---C--CTTHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred             HHHHcCCCEEEEeCCccc-CCC--C-c---c--hHHHHHHHHHH-CCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHH
Confidence            889999999999998632 111  0 0   1  25566667665 58999999999 7999999999 559999999999


Q ss_pred             hhCCccchhhhH
Q 023442          146 YQNPWYTLGHVD  157 (282)
Q Consensus       146 l~nP~if~~~~~  157 (282)
                      +.|||++ ..+.
T Consensus       332 l~~P~l~-~k~~  342 (377)
T 2r14_A          332 IANPDLP-ERFR  342 (377)
T ss_dssp             HHCTTHH-HHHH
T ss_pred             HhCchHH-HHHH
Confidence            9999986 5543

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=99.80  E-value=3.3e-19  Score=166.55  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             ccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC-CCCC-CcHHHHHHHHHHHHHhCCCCEEEE-
Q 023442            4 CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDDH-DSYNQLCDFIYKVSSLSPTRHFII-   78 (282)
Q Consensus         4 ~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G-~d~~-~~~~e~~~~v~~~le~~Gv~~i~V-   78 (282)
                      ++||.... +++.||+++++|++++.||+++|++++  ++||+||++.. |.+. .+.++... +++.++++ +|+|++ 
T Consensus       173 Flsp~~N~-R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~-~a~~l~~~-vd~i~vs  249 (343)
T 3kru_A          173 FLSPLSNK-RKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVE-YINMIKDK-VDLIDVS  249 (343)
T ss_dssp             HHCTTTCC-CCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHH-HHHHHTTT-CSEEEEE
T ss_pred             hhcccccc-cchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHH-HHHHhhcc-ccEEecc
Confidence            78998543 468899999999999999999999999  68999999972 3221 23455554 56788999 999999 


Q ss_pred             ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccchhhh
Q 023442           79 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        79 H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if~~~~  156 (282)
                      |+++.....      ...+...++.+.++++. .++|||+||+|+|+++++++++. +||+||+||+++.||+++ ..+
T Consensus       250 ~g~~~~~~~------~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~-~k~  320 (343)
T 3kru_A          250 SGGLLNVDI------NLYPGYQVKYAETIKKR-CNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWV-LHT  320 (343)
T ss_dssp             CCCSSCCCC------CCCTTTTHHHHHHHHHH-HTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHT
T ss_pred             CCceEeeee------cccCceeehHHHHHHHh-cCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEE-EEE
Confidence            576532100      00122346777677665 48999999999999999999994 599999999999999986 444

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=99.80  E-value=1.4e-19  Score=174.13  Aligned_cols=139  Identities=13%  Similarity=0.123  Sum_probs=106.5

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhc-------------------------------------------
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAAN-------------------------------------------   38 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~-------------------------------------------   38 (282)
                      ||++||+.+       |..++++++.+.+|+++|+++                                           
T Consensus       215 iNiscPnt~-------Glr~lq~~~~l~~il~~v~~~~~~~~~~~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~  287 (443)
T 1tv5_A          215 INVSSPNTP-------GLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDN  287 (443)
T ss_dssp             EECCCTTST-------TGGGGGSHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred             EeccCCCCc-------ccccccCHHHHHHHHHHHHHHHhhhcccCccccccCHHHHHHHHHHhhcccccchhhhhhhhhc
Confidence            899999842       678899999999999999864                                           


Q ss_pred             -------CCcc-EEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc----------CCCCcCCcCCCCCcc
Q 023442           39 -------TNVP-VSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL----------NGISPAENRTIPPLK  100 (282)
Q Consensus        39 -------~~ip-vsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~----------~G~~~ad~~~i~~~~  100 (282)
                             .++| |+||++.++++    +++. .+++.++++|+|+|++|+++...          .|.++   ..+.|..
T Consensus       288 ~~~~~~~~~~P~V~vKispd~~~----ed~~-~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG---~~~~~~s  359 (443)
T 1tv5_A          288 FLWFNTTKKKPLVFVKLAPDLNQ----EQKK-EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSG---AKLKDIS  359 (443)
T ss_dssp             CCCCSSSSSCCEEEEEECSCCCH----HHHH-HHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEE---HHHHHHH
T ss_pred             chhcccCCCCCeEEEEeCCCCCH----HHHH-HHHHHHHHcCCCEEEEECCCcccccccccccccCCcCC---CcchHHH
Confidence                   3689 99999988764    2333 25667889999999999987521          11111   0111234


Q ss_pred             HHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh-CCccchhhh
Q 023442          101 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ-NPWYTLGHV  156 (282)
Q Consensus       101 ~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~-nP~if~~~~  156 (282)
                      ++.++++++... ++|||++|||.|++|+.++++.|||+||+||+++. +||++ ..+
T Consensus       360 l~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l~-~~i  416 (443)
T 1tv5_A          360 TKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSA-VQI  416 (443)
T ss_dssp             HHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHH-HHH
T ss_pred             HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHHH-HHH
Confidence            667777777542 89999999999999999999999999999999875 99985 443

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=99.80  E-value=2.9e-19  Score=170.23  Aligned_cols=149  Identities=15%  Similarity=0.088  Sum_probs=110.3

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCC-C----CCCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-V----DDHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G-~----d~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++|++|++++.||+++|+++++ .||+||++.+ |    +...+.++... +++
T Consensus       190 Ih~ahGYLl~QFLsp~~N-~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~-la~  267 (402)
T 2hsa_B          190 IHGAHGYLIDQFLKDGIN-DRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLA-VVE  267 (402)
T ss_dssp             EECCTTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHH-HHH
T ss_pred             ECCccchHHHhccCCccC-ccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHH-HHH
Confidence            78887         8733 34678999999999999999999999984 5999999975 2    12223444443 577


Q ss_pred             HHHhCC------CCEEEEecCCcccCCCCcCCcCCCC-C-ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCC
Q 023442           67 VSSLSP------TRHFIIHSRKALLNGISPAENRTIP-P-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAH  137 (282)
Q Consensus        67 ~le~~G------v~~i~VH~Rt~~~~G~~~ad~~~i~-~-~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~D  137 (282)
                      .++++|      +++|+||+|+.......+.  ..++ + ..|+.+.++++. .++|||+||+| |+++++++++ .+||
T Consensus       268 ~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~vk~~-~~iPvi~~G~i-~~~~a~~~l~~g~aD  343 (402)
T 2hsa_B          268 RLNKIQLHSGSKLAYLHVTQPRYVAYGQTEA--GRLGSEEEEARLMRTLRNA-YQGTFICSGGY-TRELGIEAVAQGDAD  343 (402)
T ss_dssp             HHHHHHHHHTSCCSEEEEECCCCCTTTTSSS--TTTTHHHHHHHHHHHHHHH-CSSCEEEESSC-CHHHHHHHHHTTSCS
T ss_pred             HHHhcCCccCCceEEEEEecCccccccCCcc--ccccCCcchHHHHHHHHHH-CCCCEEEeCCC-CHHHHHHHHHCCCCc
Confidence            889999      9999999986321011110  0000 1 135666666665 58999999999 9999999999 5699


Q ss_pred             EEEecHHhhhCCccchhhhH
Q 023442          138 HVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       138 gVmIGRgal~nP~if~~~~~  157 (282)
                      +||+||+++.|||++ ..+.
T Consensus       344 ~V~igR~~l~dP~l~-~k~~  362 (402)
T 2hsa_B          344 LVSYGRLFISNPDLV-MRIK  362 (402)
T ss_dssp             EEEESHHHHHCTTHH-HHHH
T ss_pred             eeeecHHHHhCchHH-HHHH
Confidence            999999999999986 5543

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=99.80  E-value=2.3e-19  Score=169.61  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=106.3

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCC-C----CCCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-V----DDHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G-~----d~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++++++++++.+|+++|+++++ -||+||++.+ |    +...+.++.. .+++
T Consensus       186 ih~a~GyLl~qFlsp~~N-~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~-~la~  263 (376)
T 1icp_A          186 IHGAHGYLIDQFMKDQVN-DRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGL-YMVE  263 (376)
T ss_dssp             EEECTTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHH-HHHH
T ss_pred             EcCccchhhhhccCCccc-CCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHH-HHHH
Confidence            68887         6632 24578999999999999999999999985 3999999964 2    2222333433 4577


Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .++++|+++|++|+|+....+....        .|+.+.++++. .++|||+||+| |+++++++++ .+||+||+||++
T Consensus       264 ~le~~Gvd~i~v~~~~~~~~~~~~~--------~~~~~~~vr~~-~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~  333 (376)
T 1icp_A          264 SLNKYDLAYCHVVEPRMKTAWEKIE--------CTESLVPMRKA-YKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLF  333 (376)
T ss_dssp             HHGGGCCSEEEEECCSCCC--------------CCCCSHHHHHH-CCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred             HHHHcCCCEEEEcCCcccCCCCccc--------cHHHHHHHHHH-cCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHH
Confidence            8899999999999986422111001        12334455554 58999999999 9999999999 569999999999


Q ss_pred             hhCCccchhhhH
Q 023442          146 YQNPWYTLGHVD  157 (282)
Q Consensus       146 l~nP~if~~~~~  157 (282)
                      +.|||++ ..+.
T Consensus       334 l~~P~l~-~k~~  344 (376)
T 1icp_A          334 ISNPDLP-KRFE  344 (376)
T ss_dssp             HHCTTHH-HHHH
T ss_pred             HhCccHH-HHHH
Confidence            9999986 5543

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=99.79  E-value=1.4e-18  Score=163.59  Aligned_cols=141  Identities=14%  Similarity=0.113  Sum_probs=109.1

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecC-CCC----CCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRI-GVD----DHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~-G~d----~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++|+++++++.+|+++|+++++. ||+||++. +|.    +..+.++..+ +++
T Consensus       180 ih~a~gYLl~qFlsp~~N-~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~-~a~  257 (365)
T 2gou_A          180 LHAANGYLINQFIDSEAN-NRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTA-AAA  257 (365)
T ss_dssp             EECCTTSHHHHHHSGGGC-CCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHH-HHH
T ss_pred             EecccchhHhhccCCCcc-CcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHH-HHH
Confidence            67887         7632 346789999999999999999999999843 99999997 432    1223444443 577


Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRga  145 (282)
                      .++++|+++|++|+++.  .+. +       ...++.+.++++. .++|||+||+| |+++++++++. +||+||+||++
T Consensus       258 ~l~~~G~d~i~v~~~~~--~~~-~-------~~~~~~~~~i~~~-~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~  325 (365)
T 2gou_A          258 LLNKHRIVYLHIAEVDW--DDA-P-------DTPVSFKRALREA-YQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPF  325 (365)
T ss_dssp             HHHHTTCSEEEEECCBT--TBC-C-------CCCHHHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHH
T ss_pred             HHHHcCCCEEEEeCCCc--CCC-C-------CccHHHHHHHHHH-CCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHH
Confidence            88999999999999763  121 1       1126667777665 58999999999 99999999994 59999999999


Q ss_pred             hhCCccchhhhH
Q 023442          146 YQNPWYTLGHVD  157 (282)
Q Consensus       146 l~nP~if~~~~~  157 (282)
                      +.|||++ ..+.
T Consensus       326 i~~P~l~-~~~~  336 (365)
T 2gou_A          326 IANPDLP-ERLR  336 (365)
T ss_dssp             HHCTTHH-HHHH
T ss_pred             HhCchHH-HHHH
Confidence            9999986 5544

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=99.79  E-value=1.3e-18  Score=162.80  Aligned_cols=148  Identities=16%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC-CCC-CCcHHHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDD-HDSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G-~d~-~~~~~e~~~~v~~~l   68 (282)
                      ||++|         |... .+++.||+++++|++++.+|+++|++++  ++||+||++.. |.+ ..+.++... +++.+
T Consensus       171 ih~a~GyLl~qFlsp~~N-~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~-la~~L  248 (349)
T 3hgj_A          171 LHMAHGYLLSSFLSPLSN-QRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLA-FARRL  248 (349)
T ss_dssp             EEECTTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHH-HHHHH
T ss_pred             ECCccchHHHHhcCCccc-ccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHH-HHHHH
Confidence            79999         8743 3468899999999999999999999999  78999999962 111 112345444 56788


Q ss_pred             HhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhh
Q 023442           69 SLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal  146 (282)
                      +++|+|+|++| +++...... +    .-+...++.+.++++. .++||+++|+|+|+++++++++.| ||+||+||+++
T Consensus       249 ~~~Gvd~i~vs~g~~~~~~~~-~----~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~l  322 (349)
T 3hgj_A          249 KELGVDLLDCSSGGVVLRVRI-P----LAPGFQVPFADAVRKR-VGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLL  322 (349)
T ss_dssp             HHTTCCEEEEECCCSCSSSCC-C----CCTTTTHHHHHHHHHH-HCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHH
T ss_pred             HHcCCCEEEEecCCcCccccc-C----CCccccHHHHHHHHHH-cCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHH
Confidence            99999999999 443211000 0    0112346667777665 489999999999999999999955 99999999999


Q ss_pred             hCCccchhhhHh
Q 023442          147 QNPWYTLGHVDT  158 (282)
Q Consensus       147 ~nP~if~~~~~~  158 (282)
                      .||+++ ..+..
T Consensus       323 anPdl~-~k~~~  333 (349)
T 3hgj_A          323 RDPYFP-LRAAK  333 (349)
T ss_dssp             HCTTHH-HHHHH
T ss_pred             hCchHH-HHHHH
Confidence            999985 55544

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=99.77  E-value=1.2e-18  Score=163.66  Aligned_cols=135  Identities=16%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCC-----CCCCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIG-----VDDHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G-----~d~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++|++|++++.||+++|+++++. ||+||++..     ++..+..++.. .+++
T Consensus       180 ih~a~GYLl~QFLsp~~N-~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~-~la~  257 (361)
T 3gka_A          180 VHGANGYLLDQFLQDSAN-RRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFG-HVAR  257 (361)
T ss_dssp             EECCTTSHHHHHHSTTTC-CCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHH-HHHH
T ss_pred             ECCcCccHHHhccCcccc-cccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHH-HHHH
Confidence            78898         8633 346889999999999999999999999843 999999862     11112233433 4677


Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .++++|+|+|+||+++   .|.         +    .+.++++. .++|||+||+| |+++++++++ .+||+||+||++
T Consensus       258 ~l~~~Gvd~i~v~~~~---~~~---------~----~~~~ik~~-~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~  319 (361)
T 3gka_A          258 ELGRRRIAFLFARESF---GGD---------A----IGQQLKAA-FGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLF  319 (361)
T ss_dssp             HHHHTTCSEEEEECCC---STT---------C----CHHHHHHH-HCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred             HHHHcCCCEEEECCCC---CCH---------H----HHHHHHHH-cCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHh
Confidence            8899999999999876   121         1    12344443 47899999999 9999999999 559999999999


Q ss_pred             hhCCccchhhhH
Q 023442          146 YQNPWYTLGHVD  157 (282)
Q Consensus       146 l~nP~if~~~~~  157 (282)
                      +.|||++ ..+.
T Consensus       320 ladPdl~-~k~~  330 (361)
T 3gka_A          320 IANPDLP-RRFK  330 (361)
T ss_dssp             HHCTTHH-HHHH
T ss_pred             HhCcHHH-HHHH
Confidence            9999986 5544

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.77  E-value=1.1e-18  Score=183.27  Aligned_cols=140  Identities=19%  Similarity=0.295  Sum_probs=104.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V---   78 (282)
                      ||+|||+. +. .++||++++++++++.++++++++.+++||+||++.+.++   +.+    +++.++++|+|+|++   
T Consensus       667 in~~~P~~-~~-~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~---~~~----~a~~~~~~G~d~i~v~Nt  737 (1025)
T 1gte_A          667 LNLSCPHG-MG-ERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTD---IVS----IARAAKEGGADGVTATNT  737 (1025)
T ss_dssp             EECCCBCC-CC------SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSC---HHH----HHHHHHHHTCSEEEECCC
T ss_pred             EECCCCCC-CC-CCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHH---HHH----HHHHHHHcCCCEEEEecc
Confidence            89999986 44 4457999999999999999999999999999999976542   333    345678999999999   


Q ss_pred             -------------------ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           79 -------------------HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        79 -------------------H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                                         |+|+.. .|.++.   .+.|+.++.+.++++..+++|||++|||.|++|+.++++.|||+|
T Consensus       738 ~~~~~~~~~~~~~~~~~~~~gr~~~-gg~sg~---~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v  813 (1025)
T 1gte_A          738 VSGLMGLKADGTPWPAVGAGKRTTY-GGVSGT---AIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVL  813 (1025)
T ss_dssp             EEECCCBCTTSCBSSCBTTTTBBCC-EEEESG---GGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             ccccccccccccccccccccccccC-CCCCcc---cchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEE
Confidence                               444321 121111   112223567888877655899999999999999999999999999


Q ss_pred             EecHHhhhCCccchh
Q 023442          140 MVGRAAYQNPWYTLG  154 (282)
Q Consensus       140 mIGRgal~nP~if~~  154 (282)
                      ||||+++.+|+-+..
T Consensus       814 ~vg~~~l~~~~~~~~  828 (1025)
T 1gte_A          814 QVCSAVQNQDFTVIQ  828 (1025)
T ss_dssp             EESHHHHTSCTTHHH
T ss_pred             EEeeccccCCccHHH
Confidence            999999986654333

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=99.77  E-value=1.6e-18  Score=162.99  Aligned_cols=135  Identities=16%  Similarity=0.084  Sum_probs=103.5

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCCCC-----CCCcHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVD-----DHDSYNQLCDFIYK   66 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d-----~~~~~~e~~~~v~~   66 (282)
                      ||+||         |... .+++.||++|++|++++.||+++|+++++ -||+||++..-.     ..+..++.. .+++
T Consensus       172 ih~a~GYLl~QFLSp~~N-~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~-~la~  249 (362)
T 4ab4_A          172 IHGANGYLLDQFLQSSTN-QRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFT-YVAR  249 (362)
T ss_dssp             EECCTTSHHHHHHSTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHH-HHHH
T ss_pred             ECCcCccHHHhhcCCccc-cccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHH-HHHH
Confidence            78898         8632 34688999999999999999999999984 399999996311     111233333 4677


Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      .++++|+|+|+||+++   .|.         +    .+.++++. .++|||+||+| |+++++++++ .+||+||+||++
T Consensus       250 ~l~~~Gvd~i~v~~~~---~~~---------~----~~~~ik~~-~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~  311 (362)
T 4ab4_A          250 ELGKRGIAFICSRERE---ADD---------S----IGPLIKEA-FGGPYIVNERF-DKASANAALASGKADAVAFGVPF  311 (362)
T ss_dssp             HHHHTTCSEEEEECCC---CTT---------C----CHHHHHHH-HCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHH
T ss_pred             HHHHhCCCEEEECCCC---CCH---------H----HHHHHHHH-CCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHh
Confidence            8899999999999876   121         1    12344443 47899999999 9999999999 559999999999


Q ss_pred             hhCCccchhhhH
Q 023442          146 YQNPWYTLGHVD  157 (282)
Q Consensus       146 l~nP~if~~~~~  157 (282)
                      +.|||++ ..+.
T Consensus       312 lanPdl~-~k~~  322 (362)
T 4ab4_A          312 IANPDLP-ARLA  322 (362)
T ss_dssp             HHCTTHH-HHHH
T ss_pred             HhCcHHH-HHHH
Confidence            9999986 5443

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=99.76  E-value=9.9e-19  Score=167.33  Aligned_cols=145  Identities=13%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             ccccC---------CchhhcccCcccccc-cCCHHHHHHHHHHHhhcC------CccEEEEecC--------CCCCCCcH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSL-MLDPKFVGEAMSVIAANT------NVPVSVKCRI--------GVDDHDSY   57 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~L-l~~p~~~~eiv~~v~~~~------~ipvsvKiR~--------G~d~~~~~   57 (282)
                      ||+||         |... .+++.||+++ ++|++++.||+++|++++      ++||++|++.        ||+    .
T Consensus       189 IH~ahGYLl~QFlSp~~N-~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~----~  263 (419)
T 3l5a_A          189 ISIAQRLLIQTFFSTFSN-RRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYT----I  263 (419)
T ss_dssp             EECCTTSHHHHHHCTTTC-CCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEEC----H
T ss_pred             ECCccchHHHHccCCccc-ccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCC----H
Confidence            78888         8642 3568899999 999999999999999987      6899999986        332    3


Q ss_pred             HHHHHHHHHHHHh-CCCCEEEEecCCcccC-CCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHc
Q 023442           58 NQLCDFIYKVSSL-SPTRHFIIHSRKALLN-GISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRK  134 (282)
Q Consensus        58 ~e~~~~v~~~le~-~Gv~~i~VH~Rt~~~~-G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~  134 (282)
                      ++... +++.+++ +|+|+|+||+++.... ...+...   +...++.+..+++... ++|||+||+|+|+++++++++.
T Consensus       264 ed~~~-la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g---~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~  339 (419)
T 3l5a_A          264 DEFNQ-LIDWVMDVSNIQYLAIASWGRHIYQNTSRTPG---DHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH  339 (419)
T ss_dssp             HHHHH-HHHHHHHHSCCCCEEECCTTCCGGGCBCCCSS---TTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG
T ss_pred             HHHHH-HHHHHHhhcCCcEEEEeeCCccccccccCCCC---ccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh
Confidence            45444 4667888 9999999998864100 0000000   1112344455554433 6999999999999999999999


Q ss_pred             CCCEEEecHHhhhCCccchhhhH
Q 023442          135 GAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       135 g~DgVmIGRgal~nP~if~~~~~  157 (282)
                       ||+||+||+++.||+++ ..+.
T Consensus       340 -aDlVaiGR~~IanPdlv-~ki~  360 (419)
T 3l5a_A          340 -ADMVGMSSPFVTEPDFV-HKLA  360 (419)
T ss_dssp             -CSEEEESTHHHHCTTHH-HHHH
T ss_pred             -CCcHHHHHHHHHCcHHH-HHHH
Confidence             99999999999999986 5544

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=99.75  E-value=5.5e-18  Score=154.97  Aligned_cols=135  Identities=23%  Similarity=0.378  Sum_probs=102.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE---
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII---   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V---   78 (282)
                      ||++||+.   +++  |..+..+++++.++++++++.+++||.+|++.++.+   ..++    ++.++++|+|.|++   
T Consensus       131 i~~~~p~~---~~g--~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~---~~~~----a~~l~~~G~d~i~v~~~  198 (311)
T 1ep3_A          131 LNISCPNV---KHG--GQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTD---IVPI----AKAVEAAGADGLTMINT  198 (311)
T ss_dssp             EECCSEEG---GGT--TEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSC---SHHH----HHHHHHTTCSEEEECCC
T ss_pred             EeCCCCCC---CCc--hhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHH---HHHH----HHHHHHcCCCEEEEeCC
Confidence            69999983   222  567778999999999999999999999999987753   2332    44678999999999   


Q ss_pred             ------ecCCcc------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           79 ------HSRKAL------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        79 ------H~Rt~~------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                            |.|+..      ..|.++.   ...+..++.+.++++. .++|||++|||.|++|+.++++.|||+||+||+++
T Consensus       199 ~~g~~i~~~~~~~~~~~~~~g~~g~---~~~~~~~~~i~~i~~~-~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l  274 (311)
T 1ep3_A          199 LMGVRFDLKTRQPILANITGGLSGP---AIKPVALKLIHQVAQD-VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANF  274 (311)
T ss_dssp             EEECCBCTTTCSBSSTTSCEEEESG---GGHHHHHHHHHHHHTT-CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHH
T ss_pred             CcccccCcccCCccccCCCCcccCc---cchHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence                  554421      0111110   1111234667777664 58999999999999999999998999999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      .+|+++
T Consensus       275 ~~p~~~  280 (311)
T 1ep3_A          275 ADPFVC  280 (311)
T ss_dssp             HCTTHH
T ss_pred             cCcHHH
Confidence            999985

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=99.75  E-value=9.4e-18  Score=157.80  Aligned_cols=145  Identities=16%  Similarity=0.186  Sum_probs=107.6

Q ss_pred             CCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC-CCCC--CcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442            6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG-VDDH--DSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus         6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G-~d~~--~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      ||... .+++.||++|+++++++.+|+++|++++  ++||+||++.. +.+.  .+.++... +++.++++|+|+|+||.
T Consensus       190 sp~~N-~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~-la~~L~~~Gvd~i~vs~  267 (363)
T 3l5l_A          190 SEHSN-KRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIE-LARRFKAGGLDLLSVSV  267 (363)
T ss_dssp             CTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHH-HHHHHHHTTCCEEEEEE
T ss_pred             CCCcC-CCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHH-HHHHHHHcCCCEEEEec
Confidence            68642 3578899999999999999999999998  68999999863 1111  12344444 56788999999999997


Q ss_pred             CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhhhCCccchhhhHh
Q 023442           81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVDT  158 (282)
Q Consensus        81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal~nP~if~~~~~~  158 (282)
                      ++.......+    .-+...++.+.++++. .++|||+||+|+|+++++++++.| ||+|++||+++.||+++ ..+..
T Consensus       268 g~~~~~~~~~----~~~~~~~~~~~~ir~~-~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~-~k~~~  340 (363)
T 3l5l_A          268 GFTIPDTNIP----WGPAFMGPIAERVRRE-AKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWA-YFAAK  340 (363)
T ss_dssp             CCCSSCCCCC----CCTTTTHHHHHHHHHH-HTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHH-HHHHH
T ss_pred             CccccccccC----CCcchhHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHH-HHHHH
Confidence            5421110000    0012246666666665 489999999999999999999955 99999999999999985 55544

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=99.73  E-value=3.7e-17  Score=154.61  Aligned_cols=139  Identities=9%  Similarity=-0.042  Sum_probs=105.1

Q ss_pred             ccccC---------Cchhhcc-cCcccc-cccCCHHHHHHHHHHHhhcCC-ccEEEEecCC-C----CCCCcHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAG-HGCFGV-SLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-V----DDHDSYNQLCDFI   64 (282)
Q Consensus         2 lN~GC---------P~~~v~~-~g~yGs-~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G-~----d~~~~~~e~~~~v   64 (282)
                      ||+||         |... .+ ++.||+ +++++++++.+|+++|+++++ .||+||++.. +    ....+.++... +
T Consensus       194 ih~a~GYLl~QFlsp~~N-~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~-l  271 (379)
T 3aty_A          194 IHGANGYLLDAFFRESSN-KRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKH-L  271 (379)
T ss_dssp             EEECTTSHHHHHHSTTTC-CCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHH-H
T ss_pred             EcCcCchHHhhccCCCCC-ccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHH-H
Confidence            67776         6521 23 578999 999999999999999999985 4899999972 2    11223444443 5


Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      ++.++++|+++|++|.++..  .  +    ..+   .+ +.++++ ..++|||+||+| |+++++++++ .+||+||+||
T Consensus       272 a~~l~~~Gvd~i~v~~~~~~--~--~----~~~---~~-~~~ir~-~~~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR  337 (379)
T 3aty_A          272 CKKIEPLSLAYLHYLRGDMV--N--Q----QIG---DV-VAWVRG-SYSGVKISNLRY-DFEEADQQIREGKVDAVAFGA  337 (379)
T ss_dssp             HHHHGGGCCSEEEEECSCTT--S--C----CCC---CH-HHHHHT-TCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESH
T ss_pred             HHHHHHhCCCEEEEcCCCcC--C--C----Ccc---HH-HHHHHH-HCCCcEEEECCC-CHHHHHHHHHcCCCeEEEecH
Confidence            67889999999999987521  1  1    112   24 556655 458999999999 9999999999 5599999999


Q ss_pred             HhhhCCccchhhhH
Q 023442          144 AAYQNPWYTLGHVD  157 (282)
Q Consensus       144 gal~nP~if~~~~~  157 (282)
                      +++.||+++ ..+.
T Consensus       338 ~~l~~P~l~-~k~~  350 (379)
T 3aty_A          338 KFIANPDLV-ERAQ  350 (379)
T ss_dssp             HHHHCTTHH-HHHH
T ss_pred             HHHhCcHHH-HHHH
Confidence            999999986 5544

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.70  E-value=3.4e-17  Score=166.37  Aligned_cols=147  Identities=9%  Similarity=0.058  Sum_probs=107.8

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecC-------CCCCCCcHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRI-------GVDDHDSYNQLCDF   63 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~-------G~d~~~~~~e~~~~   63 (282)
                      ||+||         |... .+++.||+++++|++++.||+++|++++  ++||++|++.       ||+..   ++..+ 
T Consensus       168 ih~a~gyLl~qFlsp~~N-~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~---~~~~~-  242 (729)
T 1o94_A          168 VYGAHSYLPLQFLNPYYN-KRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAE---VDGQK-  242 (729)
T ss_dssp             EEECTTCHHHHHHCTTTC-CCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTT---THHHH-
T ss_pred             EccccchHHHHhcCCccC-CCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCch---HHHHH-
Confidence            78999         7532 2467899999999999999999999999  7999999985       44411   23333 


Q ss_pred             HHHHHHhCCCCEEEEecCCcc-cCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKAL-LNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~-~~G~~~ad~~~i~~~-~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      +++++++ |+|+|.||.++-. +.+..... ...++. .++.++++++. .++|||+||+|+|+++++++++ .+||+||
T Consensus       243 ~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~-~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~  319 (729)
T 1o94_A          243 FVEMADS-LVDMWDITIGDIAEWGEDAGPS-RFYQQGHTIPWVKLVKQV-SKKPVLGVGRYTDPEKMIEIVTKGYADIIG  319 (729)
T ss_dssp             HHHHHGG-GCSEEEEEECCSTTGGGTSCCT-TTCCTTTTHHHHHHHHTT-CSSCEECCSCCCCHHHHHHHHHTTSCSBEE
T ss_pred             HHHHHHh-hcCEEEEeeecccccccccCCc-cccCccccHHHHHHHHHH-CCCEEEEeCCCCCHHHHHHHHHCCCCCEEE
Confidence            4567776 7999999987420 01100000 011111 35666666654 6999999999999999999999 5699999


Q ss_pred             ecHHhhhCCccchhhhH
Q 023442          141 VGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       141 IGRgal~nP~if~~~~~  157 (282)
                      +||+++.|||++ ..+.
T Consensus       320 ~gR~~l~~P~~~-~~~~  335 (729)
T 1o94_A          320 CARPSIADPFLP-QKVE  335 (729)
T ss_dssp             ESHHHHHCTTHH-HHHH
T ss_pred             eCchhhcCchHH-HHHH
Confidence            999999999986 4443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.70  E-value=6.9e-17  Score=162.43  Aligned_cols=150  Identities=9%  Similarity=0.027  Sum_probs=108.9

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCC--CCCCcHHHHHHHHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKVS   68 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~--d~~~~~~e~~~~v~~~l   68 (282)
                      ||+||         |... .+++.||++++++++++.+|+++|++++  ++||++|++...  ....+.++..+ +++.+
T Consensus       160 ih~~~gyl~~qFlsp~~n-~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~-~a~~l  237 (671)
T 1ps9_A          160 VMGSEGYLINEFLTLRTN-QRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVE-LAQAI  237 (671)
T ss_dssp             EEECBTSHHHHHHCTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHH-HHHHH
T ss_pred             EccccchHHHHhCCCccC-CCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHH-HHHHH
Confidence            68887         6532 2468899999999999999999999998  799999999521  11123444444 46778


Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCc-cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPL-KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~-~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal  146 (282)
                      +++|+|+|++|+|+.....  +......++. .++.++++++ ..++||++||+|+|+++++++++. +||+||+||+++
T Consensus       238 ~~~g~d~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~-~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l  314 (671)
T 1ps9_A          238 EAAGATIINTGIGWHEARI--PTIATPVPRGAFSWVTRKLKG-HVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFL  314 (671)
T ss_dssp             HHHTCSEEEEEECBTTCSS--CSSSTTSCTTTTHHHHHHHTT-SCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHH
T ss_pred             HhcCCCEEEcCCCcccccc--ccccccCCcchHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHH
Confidence            9999999999987532110  1000111222 2455656654 468999999999999999999995 599999999999


Q ss_pred             hCCccchhhhH
Q 023442          147 QNPWYTLGHVD  157 (282)
Q Consensus       147 ~nP~if~~~~~  157 (282)
                      .||+++ ..+.
T Consensus       315 ~~P~l~-~k~~  324 (671)
T 1ps9_A          315 ADAELL-SKAQ  324 (671)
T ss_dssp             HCTTHH-HHHH
T ss_pred             hCcHHH-HHHH
Confidence            999986 4443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.69  E-value=4.5e-17  Score=164.36  Aligned_cols=136  Identities=10%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccC
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLN   86 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~   86 (282)
                      +++.||+++++|++++.||+++|++++  ++||.+|+.  .++.    -+.++..+ +++.+++ |+|+|.||+++....
T Consensus       195 R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s--~~~~~~~g~~~~~~~~-~~~~l~~-~~d~~~v~~~~~~~~  270 (690)
T 3k30_A          195 RTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRIT--VEEEIDGGITREDIEG-VLRELGE-LPDLWDFAMGSWEGD  270 (690)
T ss_dssp             CCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEE--CCCCSTTSCCHHHHHH-HHHHHTT-SSSEEEEECSCHHHH
T ss_pred             CccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEC--ccccCCCCCCHHHHHH-HHHHHHh-hcCEEEEeccccccc
Confidence            468899999999999999999999998  456666664  2221    12345444 5677777 899999998752100


Q ss_pred             CCCcCCcCCCCC-ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           87 GISPAENRTIPP-LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        87 G~~~ad~~~i~~-~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      .. +..  ..++ ..++.+.++++ ..++|||+||+|+|+++++++++ .+||+||+||+++.|||++ ..+.
T Consensus       271 ~~-~~~--~~~~~~~~~~~~~i~~-~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~-~~~~  338 (690)
T 3k30_A          271 SV-TSR--FAPEGRQEEFVAGLKK-LTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLP-NKIR  338 (690)
T ss_dssp             TC-CTT--TCCTTTTHHHHTTSGG-GCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHHH
T ss_pred             CC-CCc--cCCccccHHHHHHHHH-HcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHH-HHHH
Confidence            00 000  0011 12444444444 46899999999999999999999 5699999999999999986 4443

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=99.65  E-value=9.9e-17  Score=152.59  Aligned_cols=144  Identities=10%  Similarity=0.017  Sum_probs=101.1

Q ss_pred             ccccC---------CchhhcccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCCCCC------C-C---cHHHHH
Q 023442            2 PSCGC---------PSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDD------H-D---SYNQLC   61 (282)
Q Consensus         2 lN~GC---------P~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~------~-~---~~~e~~   61 (282)
                      ||+||         |... .+++.||+++++|++++.+|+++|+++++ .||++|++. |+.      . +   ..++ .
T Consensus       187 ih~~~GYLl~QFLsp~~N-~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~-~~~~~g~~~~~d~~~~~~~-~  263 (407)
T 3tjl_A          187 LHAAHGYLLDQFLQPCTN-QRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISP-WATFQNMKAHKDTVHPLTT-F  263 (407)
T ss_dssp             EECCTTSHHHHHHSTTTC-CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-TCCGGGCCGGGSSSCHHHH-H
T ss_pred             ECCccchHHHHhcCcccc-ccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECc-ccccCCCcccccccccHHH-H
Confidence            78999         8532 24578999999999999999999999985 489999886 332      1 1   1222 3


Q ss_pred             HHHHHHH---HhCC--CCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH--
Q 023442           62 DFIYKVS---SLSP--TRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR--  133 (282)
Q Consensus        62 ~~v~~~l---e~~G--v~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~--  133 (282)
                      ..+++.+   ++.|  +++|+|| +|+... ...+..+      .|..+..+.+ ..++|||+||||++.+|+.++++  
T Consensus       264 ~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~-~~~~~~~------~~~~~~~ir~-~~~~PvI~~Ggi~~~~dA~~~i~~~  335 (407)
T 3tjl_A          264 SYLVHELQQRADKGQGIAYISVVEPRVSGN-VDVSEED------QAGDNEFVSK-IWKGVILKAGNYSYDAPEFKTLKED  335 (407)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECTTEETT-EECCGGG------CCCCSHHHHH-HCCSEEEEESCGGGGTTTTHHHHHH
T ss_pred             HHHHHHHHhHhhcCCceeEEEEEccccCCC-CcCCccc------hhHHHHHHHH-HhCCCEEecCCCCCHHHHHHHHHhh
Confidence            3456677   7889  9999999 665321 1111110      0111223333 34789999999999998877775  


Q ss_pred             --cCCCEEEecHHhhhCCccchhhhH
Q 023442          134 --KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                        .+||+||+||+++.|||++ ..+.
T Consensus       336 ~~g~aDlVa~GR~~iaNPdL~-~ri~  360 (407)
T 3tjl_A          336 IADKRTLVGFSRYFTSNPNLV-WKLR  360 (407)
T ss_dssp             HTTSSEEEECSHHHHHCTTHH-HHHH
T ss_pred             ccCCCeEEEeChhhhhCchHH-HHHH
Confidence              4699999999999999986 5443

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=99.62  E-value=1.2e-15  Score=142.88  Aligned_cols=137  Identities=17%  Similarity=0.203  Sum_probs=91.2

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHh-CCCCEEEE--
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFII--   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~-~Gv~~i~V--   78 (282)
                      ||++||+.+    +  |..+..+++.+.++++++++.+..|+.+|++.++++. ....    .+..+.+ .+++.++.  
T Consensus       161 lNiScPn~~----g--~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~-~~~~----~~~~~~~~~~~~~i~~i~  229 (354)
T 3tjx_A          161 LNLSCPNVP----G--KPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFA-AFDA----AAEILNEFPKVQFITCIN  229 (354)
T ss_dssp             EECC---------------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHH-HHHH----HHHHHHTCTTEEEEEECC
T ss_pred             eeeCCCCCc----c--hhhhccCHHHHHHHHHHHHHHhhcccccccCCCCCch-hHHH----HHHHHHhhcccchhheec
Confidence            799999742    2  6788999999999999999999999999999988652 1111    1222333 34444332  


Q ss_pred             --------ecCCc--------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           79 --------HSRKA--------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        79 --------H~Rt~--------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                              +.++.        ..+|.|+   ..+.+.....++++.+..+++|||++|||.|.+||.+++..|||+||||
T Consensus       230 t~~~~~~id~~~~~~~~~~~~~~GGlSG---~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~  306 (354)
T 3tjx_A          230 SIGNGLVIDAETESVVIKPKQGFGGLGG---RYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG  306 (354)
T ss_dssp             CEEEEECEETTTTEESCSGGGGEEEEEG---GGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEEC
T ss_pred             ccccccccccccccccccCcccccccCc---hhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence                    22221        1122221   1122333455667766667899999999999999999999999999999


Q ss_pred             HHh-hhCCccc
Q 023442          143 RAA-YQNPWYT  152 (282)
Q Consensus       143 Rga-l~nP~if  152 (282)
                      +|+ +.+|++|
T Consensus       307 Ta~~y~GP~~~  317 (354)
T 3tjx_A          307 TALQEEGPSIF  317 (354)
T ss_dssp             HHHHHHCTTHH
T ss_pred             hhhhhcCchHH
Confidence            997 5789986

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.57  E-value=6.8e-15  Score=138.55  Aligned_cols=149  Identities=20%  Similarity=0.254  Sum_probs=102.9

Q ss_pred             cccc---c--CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcccCCCCc
Q 023442           18 GVSL---M--LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISP   90 (282)
Q Consensus        18 Gs~L---l--~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~~~G~~~   90 (282)
                      |+.+   +  .++++..++++++++.+++||.||.   +.   +.+ .    ++.++++|+|.|+|++  +.+...|   
T Consensus       202 g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~---v~---~~e-~----a~~a~~~Gad~I~vs~~ggr~~~~g---  267 (368)
T 2nli_A          202 GMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKG---IQ---HPE-D----ADMAIKRGASGIWVSNHGARQLYEA---  267 (368)
T ss_dssp             GC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEE---EC---SHH-H----HHHHHHTTCSEEEECCGGGTSCSSC---
T ss_pred             CchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEc---CC---CHH-H----HHHHHHcCCCEEEEcCCCcCCCCCC---
Confidence            6665   3  3788888999999999999999994   21   222 2    3456799999999954  3222112   


Q ss_pred             CCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCccc
Q 023442           91 AENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT  169 (282)
Q Consensus        91 ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~  169 (282)
                             +..|+.+.++++... ++|||++|||.|.+|+.+++..|||+|||||     ||++ ....   .|+    ..
T Consensus       268 -------~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iGr-----~~l~-~~~~---~G~----~g  327 (368)
T 2nli_A          268 -------PGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGR-----PVLF-GLAL---GGW----QG  327 (368)
T ss_dssp             -------CCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECH-----HHHH-HHHH---HHH----HH
T ss_pred             -------CChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECH-----HHHH-HHHh---cCh----HH
Confidence                   224777777766533 6999999999999999999999999999999     4453 2211   121    12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 023442          170 RRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPL  202 (282)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~  202 (282)
                      ..++++.+.++++.....+|.  ..+..+++..
T Consensus       328 v~~~l~~l~~el~~~m~~~G~--~~i~~l~~~~  358 (368)
T 2nli_A          328 AYSVLDYFQKDLTRVMQLTGS--QNVEDLKGLD  358 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC--SSHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCC--cCHHHhcccc
Confidence            245667777777777777886  2566666643

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.55  E-value=3.1e-14  Score=132.82  Aligned_cols=168  Identities=15%  Similarity=0.077  Sum_probs=102.6

Q ss_pred             ccccCCchhhcccCcccccccCCHHH--HHHHHHHHhhcCCccEEEEec-CCCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKF--VGEAMSVIAANTNVPVSVKCR-IGVDDHDSYNQLCDFIYKVSSLSPTRHFII   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~--~~eiv~~v~~~~~ipvsvKiR-~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V   78 (282)
                      ||++||+..+.  .. |     ++++  +.++++++++.+++||.+|+. .+++    . +.    ++.+.++|+|+|++
T Consensus       146 i~~~~~~~~~~--~~-~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~----~-~~----a~~a~~~Gad~I~v  208 (349)
T 1p0k_A          146 IHLNVIQEIVM--PE-G-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS----K-AS----AGKLYEAGAAAVDI  208 (349)
T ss_dssp             EEECTTTTC----------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC----H-HH----HHHHHHHTCSEEEE
T ss_pred             ecccchhhhcC--CC-C-----CcchHHHHHHHHHHHHHcCCCEEEEecCCCCC----H-HH----HHHHHHcCCCEEEE
Confidence            79999975332  11 2     4443  778999999989999999984 3332    2 22    34567899999999


Q ss_pred             --ecCCccc-----CCCCcCC-cCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           79 --HSRKALL-----NGISPAE-NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        79 --H~Rt~~~-----~G~~~ad-~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                        |++|...     ....... .....+..++.+.++.+...++|||++|||.|++|+.+++..|||+|||||+++..+.
T Consensus       209 ~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~  288 (349)
T 1p0k_A          209 GGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALT  288 (349)
T ss_dssp             EC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred             cCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence              7775210     0000000 0001122367777776654589999999999999999999999999999997765432


Q ss_pred             cchhhhHhhhhCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 023442          151 YTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKP  201 (282)
Q Consensus       151 if~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~  201 (282)
                      .         .|.    ....+.++.+.+.++..+..+|.  ..+..++++
T Consensus       289 ~---------~g~----~~~~~~~~~~~~~l~~~m~~~G~--~~i~el~~~  324 (349)
T 1p0k_A          289 D---------SGE----EGLLEEIQLILEELKLIMTVLGA--RTIADLQKA  324 (349)
T ss_dssp             H---------HHH----HHHHHHHHHHHHHHHHHHHHHTC--CBHHHHTTC
T ss_pred             h---------cCH----HHHHHHHHHHHHHHHHHHHHhCC--CCHHHHhhC
Confidence            1         110    12234556666666666777775  245666654

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.55  E-value=1.1e-14  Score=128.67  Aligned_cols=133  Identities=14%  Similarity=0.268  Sum_probs=99.9

Q ss_pred             cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC----Ccc-----EEEEecCCCCCCC-cHHHHHHHHHHHHHhCC
Q 023442            3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT----NVP-----VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSP   72 (282)
Q Consensus         3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~----~ip-----vsvKiR~G~d~~~-~~~e~~~~v~~~le~~G   72 (282)
                      ..||  ..|.    +|+.++.+|+.+.++++.+...+    +.+     .+||+| ||.+.. +..+.    ++.+++.|
T Consensus        94 ~~Ga--d~V~----lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~-g~~~~~~~~~e~----~~~~~~~G  162 (244)
T 2y88_A           94 ATGC--ARVN----VGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGR-GWETDGGDLWDV----LERLDSEG  162 (244)
T ss_dssp             HTTC--SEEE----ECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEG-GGTEEEEEHHHH----HHHHHHTT
T ss_pred             HcCC--CEEE----ECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEEC-CccCCCCCHHHH----HHHHHhCC
Confidence            4565  4455    68889999999999999876432    333     368889 887532 22332    34567899


Q ss_pred             CCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc---CCCEEEecHHhhhCC
Q 023442           73 TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK---GAHHVMVGRAAYQNP  149 (282)
Q Consensus        73 v~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~---g~DgVmIGRgal~nP  149 (282)
                      ++.|.+|+|++...+.         ...|+.+.++++. .++|||++|||.+++|+.++++.   |||+||+||+++.+|
T Consensus       163 ~~~i~~~~~~~~~~~~---------g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~  232 (244)
T 2y88_A          163 CSRFVVTDITKDGTLG---------GPNLDLLAGVADR-TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARR  232 (244)
T ss_dssp             CCCEEEEETTTTTTTS---------CCCHHHHHHHHTT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred             CCEEEEEecCCccccC---------CCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCC
Confidence            9999999988532221         1248888888764 58999999999999999999984   999999999999999


Q ss_pred             ccchhhhH
Q 023442          150 WYTLGHVD  157 (282)
Q Consensus       150 ~if~~~~~  157 (282)
                      |.| .++.
T Consensus       233 ~~~-~~~~  239 (244)
T 2y88_A          233 FTL-PQAL  239 (244)
T ss_dssp             SCH-HHHH
T ss_pred             cCH-HHHH
Confidence            985 5543

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.3e-15  Score=133.12  Aligned_cols=130  Identities=17%  Similarity=0.155  Sum_probs=95.6

Q ss_pred             ccCCchhhcccCcccccccCC-----HHHHHHHHHHHh-hcCCccEEEEec---------CCCCCCC--cHH-HHHHHHH
Q 023442            4 CGCPSPKVAGHGCFGVSLMLD-----PKFVGEAMSVIA-ANTNVPVSVKCR---------IGVDDHD--SYN-QLCDFIY   65 (282)
Q Consensus         4 ~GCP~~~v~~~g~yGs~Ll~~-----p~~~~eiv~~v~-~~~~ipvsvKiR---------~G~d~~~--~~~-e~~~~v~   65 (282)
                      .||  .+|+    .||+++++     |+++.++++++. +.+-+++.+|+|         .||.+..  +.. ++    +
T Consensus        95 ~Ga--~~Vi----igs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~----a  164 (260)
T 2agk_A           95 KWA--SKVI----VTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADT----F  164 (260)
T ss_dssp             TTC--SCEE----ECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHH----H
T ss_pred             cCC--CEEE----ECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHH----H
Confidence            565  5666    69999999     999999999997 544344444422         2676532  222 33    3


Q ss_pred             HHHHhCCCCEEEEecCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCC---CceEEEccCCCCHHHHHHHHH-c-CCCE
Q 023442           66 KVSSLSPTRHFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFP---DLTFTLNGGINTVDEVNAALR-K-GAHH  138 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~~---~ipVi~nGdI~s~eda~~~l~-~-g~Dg  138 (282)
                      +.+++. ++.|++|++++.  ++|.           +|+.+.++++..+   ++|||+||||.|++|+.++++ + |||+
T Consensus       165 ~~~~~~-a~~il~t~i~~dG~~~G~-----------d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~g  232 (260)
T 2agk_A          165 RELRKY-TNEFLIHAADVEGLCGGI-----------DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVD  232 (260)
T ss_dssp             HHHTTT-CSEEEEEC-------CCC-----------CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEE
T ss_pred             HHHHHh-cCEEEEEeeccccCcCCC-----------CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCE
Confidence            456889 999999998753  3332           4899988887533   899999999999999999998 6 9999


Q ss_pred             EEecHHh--hhCC-ccchhhh
Q 023442          139 VMVGRAA--YQNP-WYTLGHV  156 (282)
Q Consensus       139 VmIGRga--l~nP-~if~~~~  156 (282)
                      ||+||++  +.+| |.| .++
T Consensus       233 vivg~al~l~~g~~~~~-~~~  252 (260)
T 2agk_A          233 LTFGSSLDIFGGNLVKF-EDC  252 (260)
T ss_dssp             EECCTTBGGGTCSSBCH-HHH
T ss_pred             EEeeCCHHHcCCCCCCH-HHH
Confidence            9999997  9999 985 443

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=99.54  E-value=1e-14  Score=134.14  Aligned_cols=135  Identities=21%  Similarity=0.312  Sum_probs=93.1

Q ss_pred             CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCC-------------------------C------
Q 023442            6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD-------------------------H------   54 (282)
Q Consensus         6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~-------------------------~------   54 (282)
                      ||+|++.+.++ |+++|++|+.+.+|.+    ++++||+.|+|+||.+                         .      
T Consensus        45 ~~v~~d~~~~~-G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~Id~s~~l~p~d~~~~i~k~~  119 (330)
T 2yzr_A           45 ERVPADIRAAG-GVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKK  119 (330)
T ss_dssp             SSCHHHHC--C-CCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGG
T ss_pred             CCccccccCCc-chhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCEEehhccCCHHHHHHHhhhhh
Confidence            49999999988 9999999999888764    5689999999999831                         0      


Q ss_pred             ---------CcHHHHHHHHHHHHHhCCCCEEEEec--------------CC------------c--ccCC--CCcCCc--
Q 023442           55 ---------DSYNQLCDFIYKVSSLSPTRHFIIHS--------------RK------------A--LLNG--ISPAEN--   93 (282)
Q Consensus        55 ---------~~~~e~~~~v~~~le~~Gv~~i~VH~--------------Rt------------~--~~~G--~~~ad~--   93 (282)
                               .++.|.    .+.+ +.|+++|.+||              ||            .  .+..  ...+++  
T Consensus       120 ~~~~~~~~a~~lgea----~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~El~~~A~~~gadyv~  194 (330)
T 2yzr_A          120 FNVPFVCGARNLGEA----VRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEVYGVAKFYANRYAE  194 (330)
T ss_dssp             CSSCEEEECSSHHHH----HHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGGH
T ss_pred             cccchhhccccHHHH----HHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCEee
Confidence                     023332    3334 68999999999              54            0  0000  000111  


Q ss_pred             -------------CC--CCC------------ccHHHHHHHHhcCCCceE--EEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           94 -------------RT--IPP------------LKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        94 -------------~~--i~~------------~~~~~i~~l~~~~~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                                   +.  .-+            ..++.+.++.+. .++||  |++|||.|++|+.++++.|||||||||+
T Consensus       195 ~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~-~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsa  273 (330)
T 2yzr_A          195 LAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKL-GRLPVVNFAAGGVATPADAALMMQLGSDGVFVGSG  273 (330)
T ss_dssp             HHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHH-TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHH
T ss_pred             cccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHh-CCCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHH
Confidence                         00  001            112666666654 47898  6999999999999999999999999999


Q ss_pred             hh--hCCcc
Q 023442          145 AY--QNPWY  151 (282)
Q Consensus       145 al--~nP~i  151 (282)
                      ++  .||..
T Consensus       274 I~~a~dP~~  282 (330)
T 2yzr_A          274 IFKSENPLE  282 (330)
T ss_dssp             HHTSSCHHH
T ss_pred             HhcCCCHHH
Confidence            99  55554

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.52  E-value=4e-14  Score=134.35  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=93.7

Q ss_pred             cccC---CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           20 SLML---DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        20 ~Ll~---~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .++.   +|++..++++++++.+++||.+|.   +.   +.++     ++.+.++|+|+|+|+++...+.     ++   
T Consensus       229 ~~~~~~~d~~~~~~~i~~lr~~~~~PvivKg---v~---~~e~-----A~~a~~aGad~I~vs~~ggr~~-----~~---  289 (392)
T 2nzl_A          229 AYVAKAIDPSISWEDIKWLRRLTSLPIVAKG---IL---RGDD-----AREAVKHGLNGILVSNHGARQL-----DG---  289 (392)
T ss_dssp             HHHHHHBCTTCCHHHHHHHC--CCSCEEEEE---EC---CHHH-----HHHHHHTTCCEEEECCGGGTSS-----TT---
T ss_pred             HHHhhcCChHHHHHHHHHHHHhhCCCEEEEe---cC---CHHH-----HHHHHHcCCCEEEeCCCCCCcC-----CC---
Confidence            3555   888888999999999999999994   32   2222     3456799999999965332111     11   


Q ss_pred             CCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHHH
Q 023442           97 PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVE  175 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~~  175 (282)
                      .+..++.+.++++... ++|||++|||.|.+|+.+++..|||+|||||+++....      .   .|+    ....++++
T Consensus       290 g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~------~---~g~----~gv~~~l~  356 (392)
T 2nzl_A          290 VPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLA------F---QGE----KGVQDVLE  356 (392)
T ss_dssp             CCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHH------H---HHH----HHHHHHHH
T ss_pred             CcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHH------h---cCh----HHHHHHHH
Confidence            1234777777766432 69999999999999999999999999999995543211      1   121    12235566


Q ss_pred             HHHHHHHHHHHhcCC
Q 023442          176 KYQIYGDAILGTYGN  190 (282)
Q Consensus       176 ~~~~~~~~~~~~~g~  190 (282)
                      .+.+.++......|.
T Consensus       357 ~l~~el~~~m~~~G~  371 (392)
T 2nzl_A          357 ILKEEFRLAMALSGC  371 (392)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            666666666667775

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.48  E-value=5.2e-14  Score=137.73  Aligned_cols=145  Identities=18%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      .+|.+..++++++++.+++||.||.   +..   .+ .    ++.++++|+|+|+|  |++++...+          +..
T Consensus       326 ~d~~~~~~~i~~lr~~~~~PvivKg---v~~---~e-~----A~~a~~aGad~I~vs~hgG~~~d~~----------~~~  384 (511)
T 1kbi_A          326 IDPSLTWKDIEELKKKTKLPIVIKG---VQR---TE-D----VIKAAEIGVSGVVLSNHGGRQLDFS----------RAP  384 (511)
T ss_dssp             BCTTCCHHHHHHHHHHCSSCEEEEE---ECS---HH-H----HHHHHHTTCSEEEECCTTTTSSTTC----------CCH
T ss_pred             cChHhHHHHHHHHHHHhCCcEEEEe---CCC---HH-H----HHHHHHcCCCEEEEcCCCCccCCCC----------Cch
Confidence            5788888999999999999999993   322   22 2    34567999999999  555533221          123


Q ss_pred             HHHHHHHHhcC------CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHH
Q 023442          101 YEYYYALLRDF------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVV  174 (282)
Q Consensus       101 ~~~i~~l~~~~------~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~  174 (282)
                      |+.+.++++..      .++|||++|||.|.+|+.+++..|||+|||||+++     | ....   .|+    ....+++
T Consensus       385 ~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l-----~-~~~~---~G~----~gv~~~l  451 (511)
T 1kbi_A          385 IEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL-----Y-ANSC---YGR----NGVEKAI  451 (511)
T ss_dssp             HHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHH-----H-HHHH---HHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHH-----H-HHHh---cCh----HHHHHHH
Confidence            67666665432      37999999999999999999999999999999554     3 2211   121    1223456


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 023442          175 EKYQIYGDAILGTYGNNRPHVRDVMKPLL  203 (282)
Q Consensus       175 ~~~~~~~~~~~~~~g~~~~~~~~~rk~~~  203 (282)
                      +.+.+.++......|.  ..+..++++++
T Consensus       452 ~~l~~el~~~m~~~G~--~~i~el~~~~l  478 (511)
T 1kbi_A          452 EILRDEIEMSMRLLGV--TSIAELKPDLL  478 (511)
T ss_dssp             HHHHHHHHHHHHHHTC--CBGGGCCGGGE
T ss_pred             HHHHHHHHHHHHHhCC--CcHHHHhHHHh
Confidence            6666666666677775  24455555543

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=99.48  E-value=2.7e-14  Score=133.46  Aligned_cols=149  Identities=15%  Similarity=0.221  Sum_probs=107.5

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      -+|.+..+.++.+++.+++||.+|...      +.++     ++.+.++|+|.|+|++  +++...+          +..
T Consensus       200 ~d~~~~w~~i~~lr~~~~~PvivK~v~------~~e~-----A~~a~~~GaD~I~vsn~GG~~~d~~----------~~~  258 (352)
T 3sgz_A          200 PKASFCWNDLSLLQSITRLPIILKGIL------TKED-----AELAMKHNVQGIVVSNHGGRQLDEV----------SAS  258 (352)
T ss_dssp             CCTTCCHHHHHHHHHHCCSCEEEEEEC------SHHH-----HHHHHHTTCSEEEECCGGGTSSCSS----------CCH
T ss_pred             cCCCCCHHHHHHHHHhcCCCEEEEecC------cHHH-----HHHHHHcCCCEEEEeCCCCCccCCC----------ccH
Confidence            467778889999999999999999863      2222     3456799999999954  4332111          234


Q ss_pred             HHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHHHHHHH
Q 023442          101 YEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQI  179 (282)
Q Consensus       101 ~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~~~~~~  179 (282)
                      ++.+.++++.. .++|||++|||.|.+|+.+++..|||+|||||+++..+..         .|.    ....++++.+.+
T Consensus       259 ~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~---------~G~----~gv~~~l~~l~~  325 (352)
T 3sgz_A          259 IDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLAC---------KGE----DGVKEVLDILTA  325 (352)
T ss_dssp             HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHH---------HHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh---------cCc----HHHHHHHHHHHH
Confidence            77777776543 3799999999999999999999999999999976533321         121    122356666777


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHhc
Q 023442          180 YGDAILGTYGNNRPHVRDVMKPLLHFFH  207 (282)
Q Consensus       180 ~~~~~~~~~g~~~~~~~~~rk~~~~y~~  207 (282)
                      .++......|. . .+..+++++.||.+
T Consensus       326 el~~~m~~~G~-~-~i~el~~~~~~y~k  351 (352)
T 3sgz_A          326 ELHRCMTLSGC-Q-SVAEISPDLIQFSR  351 (352)
T ss_dssp             HHHHHHHHHTC-S-BGGGCCGGGBSSCC
T ss_pred             HHHHHHHHhCC-C-cHHHHhhhcchhcc
Confidence            77777778886 2 46778899888865

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=99.48  E-value=2.6e-13  Score=121.79  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             CccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Q 023442            1 MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS   80 (282)
Q Consensus         1 ~lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~   80 (282)
                      |.+.|||...- + .+ |.+-|.+|+.+    ++|++++++||..|.|+|.     +.+     +++++++|+|.|.-+-
T Consensus        36 ~~l~~~p~d~r-~-~g-Gv~Rm~dp~~I----~~I~~aVsIPVm~k~righ-----~~E-----Aqilea~GaD~IDese   98 (291)
T 3o07_A           36 MALESIPADMR-K-SG-KVCRMSDPKMI----KDIMNSVSIPVMAKVRIGH-----FVE-----AQIIEALEVDYIDESE   98 (291)
T ss_dssp             EECSSCHHHHH-T-TT-CCCCCCCHHHH----HHHHTTCSSCEEEEEETTC-----HHH-----HHHHHHTTCSEEEEET
T ss_pred             hhccCCCchhh-h-cC-CccccCCHHHH----HHHHHhCCCCeEEEEecCc-----HHH-----HHHHHHcCCCEEeccc
Confidence            56789998643 3 34 78999999985    5556778999999999985     222     3456677777775331


Q ss_pred             C-Cc---------------------------------------------------------------ccCCC-CcCCc--
Q 023442           81 R-KA---------------------------------------------------------------LLNGI-SPAEN--   93 (282)
Q Consensus        81 R-t~---------------------------------------------------------------~~~G~-~~ad~--   93 (282)
                      + |.                                                               .+.|. +..+.  
T Consensus        99 vltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~  178 (291)
T 3o07_A           99 VLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAK  178 (291)
T ss_dssp             TSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             CCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhh
Confidence            1 00                                                               00111 10000  


Q ss_pred             --CCCCCccHHHHHHHHhcCCCceE--EEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           94 --RTIPPLKYEYYYALLRDFPDLTF--TLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        94 --~~i~~~~~~~i~~l~~~~~~ipV--i~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                        ..+ ...|+.+.++++. +++||  |+||||.|++|+.+++++||||||||||++..|.
T Consensus       179 ~a~~~-~ad~elI~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~D  237 (291)
T 3o07_A          179 VAEEM-RVPVSLLKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSN  237 (291)
T ss_dssp             HHHHH-TSCHHHHHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSC
T ss_pred             ccccc-CCCHHHHHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCC
Confidence              000 2348888888876 68998  5799999999999999999999999999998544

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.47  E-value=8.1e-14  Score=131.28  Aligned_cols=146  Identities=16%  Similarity=0.230  Sum_probs=102.4

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +.+|.+..+.++++++.+++||.+|.+..      .++     ++.+.++|+|.|+|  |+..+. .+         .+.
T Consensus       207 ~~~~~~~~~~i~~l~~~~~~pv~vK~~~~------~e~-----a~~a~~~Gad~I~vs~~ggr~~-~~---------~~~  265 (370)
T 1gox_A          207 QIDRSLSWKDVAWLQTITSLPILVKGVIT------AED-----ARLAVQHGAAGIIVSNHGARQL-DY---------VPA  265 (370)
T ss_dssp             TBCTTCCHHHHHHHHHHCCSCEEEECCCS------HHH-----HHHHHHTTCSEEEECCGGGTSS-TT---------CCC
T ss_pred             hcCccchHHHHHHHHHHhCCCEEEEecCC------HHH-----HHHHHHcCCCEEEECCCCCccC-CC---------ccc
Confidence            55777777889999999999999998732      222     23567899999999  542211 11         122


Q ss_pred             cHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHHHHHH
Q 023442          100 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQ  178 (282)
Q Consensus       100 ~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~~~~~  178 (282)
                      .++.+.++++... ++|||++|||.|.+|+.+++..|||+|||||+++....      .   .|.    ....+.++.+.
T Consensus       266 ~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~------~---~G~----~gv~~~~~~l~  332 (370)
T 1gox_A          266 TIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA------A---EGE----AGVKKVLQMMR  332 (370)
T ss_dssp             HHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH------H---HHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHh------h---ccH----HHHHHHHHHHH
Confidence            4787878776543 79999999999999999999999999999997653311      0   111    12235666777


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHH
Q 023442          179 IYGDAILGTYGNNRPHVRDVMKPLL  203 (282)
Q Consensus       179 ~~~~~~~~~~g~~~~~~~~~rk~~~  203 (282)
                      +.++..+..+|.  ..+..++++..
T Consensus       333 ~el~~~m~~~G~--~~i~el~~~~l  355 (370)
T 1gox_A          333 DEFELTMALSGC--RSLKEISRSHI  355 (370)
T ss_dssp             HHHHHHHHHHTC--SBTTTCCGGGE
T ss_pred             HHHHHHHHHhCC--CCHHHhhhcce
Confidence            777777778885  24566666654

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.44  E-value=5.9e-13  Score=117.62  Aligned_cols=134  Identities=15%  Similarity=0.255  Sum_probs=95.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEE----ecCCCCCCC-cHHHHHHHHHHHHHhCCCCEE
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVK----CRIGVDDHD-SYNQLCDFIYKVSSLSPTRHF   76 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvK----iR~G~d~~~-~~~e~~~~v~~~le~~Gv~~i   76 (282)
                      +++||  ..|.    .|+.++.+|+.+.++++.....+.+.++++    .+.||.+.. +..+.    ++.+++.|++.|
T Consensus        94 l~~Ga--d~V~----lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~----~~~~~~~G~~~i  163 (244)
T 1vzw_A           94 LATGC--TRVN----LGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYET----LDRLNKEGCARY  163 (244)
T ss_dssp             HHTTC--SEEE----ECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHH----HHHHHHTTCCCE
T ss_pred             HHcCC--CEEE----ECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHH----HHHHHhCCCCEE
Confidence            34566  3455    588899999999999998764443444433    135787643 33332    344678999999


Q ss_pred             EEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc---CCCEEEecHHhhhCCccch
Q 023442           77 IIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK---GAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus        77 ~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~---g~DgVmIGRgal~nP~if~  153 (282)
                      .+|++++...+.         ...|+.+.++++. .++|||++|||.+++|+.++++.   |||+||+||+++.+||.| 
T Consensus       164 ~~~~~~~~~~~~---------g~~~~~~~~i~~~-~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~-  232 (244)
T 1vzw_A          164 VVTDIAKDGTLQ---------GPNLELLKNVCAA-TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTL-  232 (244)
T ss_dssp             EEEEC----------------CCCHHHHHHHHHT-CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCH-
T ss_pred             EEeccCcccccC---------CCCHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCH-
Confidence            999876532221         1248888888765 58999999999999999999995   999999999999999985 


Q ss_pred             hhh
Q 023442          154 GHV  156 (282)
Q Consensus       154 ~~~  156 (282)
                      .++
T Consensus       233 ~~~  235 (244)
T 1vzw_A          233 EEA  235 (244)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.44  E-value=1.7e-13  Score=129.50  Aligned_cols=143  Identities=20%  Similarity=0.177  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +|++..++++++++.+++||.+|.   +.   +.++     ++.+.++|+|.|.|  |++++...|.          ..+
T Consensus       209 ~p~~~~~~i~~i~~~~~~Pv~vkg---v~---t~e~-----a~~a~~aGad~I~vs~~gg~~~d~~~----------~~~  267 (380)
T 1p4c_A          209 DASFNWEALRWLRDLWPHKLLVKG---LL---SAED-----ADRCIAEGADGVILSNHGGRQLDCAI----------SPM  267 (380)
T ss_dssp             CTTCCHHHHHHHHHHCCSEEEEEE---EC---CHHH-----HHHHHHTTCSEEEECCGGGTSCTTCC----------CGG
T ss_pred             CccccHHHHHHHHHhcCCCEEEEe---cC---cHHH-----HHHHHHcCCCEEEEcCCCCCcCCCCc----------CHH
Confidence            788888999999999999999994   32   2222     34567899999999  7765432221          136


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHHHHHHHHH
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYG  181 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  181 (282)
                      +.+.++++. .++|||++|||.|.+|+.+++..|||+||+||+++....      .   .|.    ....+.++.+.+.+
T Consensus       268 ~~l~~v~~~-~~~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~------~---~g~----~~v~~~~~~l~~el  333 (380)
T 1p4c_A          268 EVLAQSVAK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLA------A---RGE----TGVDEVLTLLKADI  333 (380)
T ss_dssp             GTHHHHHHH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHH------H---HHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHH------h---cCH----HHHHHHHHHHHHHH
Confidence            666677664 367999999999999999999999999999999975321      0   121    12345667777778


Q ss_pred             HHHHHhcCCCchHHHHHHHHHH
Q 023442          182 DAILGTYGNNRPHVRDVMKPLL  203 (282)
Q Consensus       182 ~~~~~~~g~~~~~~~~~rk~~~  203 (282)
                      +.....+|.  ..+..++++.+
T Consensus       334 ~~~m~~~G~--~~i~el~~~~l  353 (380)
T 1p4c_A          334 DRTLAQIGC--PDITSLSPDYL  353 (380)
T ss_dssp             HHHHHHHTC--CBGGGCCGGGE
T ss_pred             HHHHHHhCC--CCHHHhccCeE
Confidence            888888886  25667777754

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.40  E-value=4.4e-13  Score=132.41  Aligned_cols=123  Identities=9%  Similarity=0.026  Sum_probs=91.6

Q ss_pred             cccccCCHHHHHHHHHHHhhcCCccEEEEe----------------------------------cCCCCCCC--cHHHHH
Q 023442           18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKC----------------------------------RIGVDDHD--SYNQLC   61 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKi----------------------------------R~G~d~~~--~~~e~~   61 (282)
                      ++.++.+|+++.++.+..-+. .+-+++.+                                  +.||++..  +..+  
T Consensus       380 ~~~~~~~~~~i~~~~~~~g~~-~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e--  456 (555)
T 1jvn_A          380 LGNRGDGTSPIETISKAYGAQ-AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWE--  456 (555)
T ss_dssp             TTSCCCSCSHHHHHHHHHCGG-GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHH--
T ss_pred             ccccccCHHHHHHHHHHhCCC-cEEEEEEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHH--
Confidence            445677899999999987531 12222222                                  23676532  2333  


Q ss_pred             HHHHHHHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCE
Q 023442           62 DFIYKVSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHH  138 (282)
Q Consensus        62 ~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~Dg  138 (282)
                        .++.+++.|++.|.+|++++  .++|.           +|+.+.++++. .++|||+||||.|++|+.++++ +|||+
T Consensus       457 --~a~~~~~~Ga~~il~t~~~~dG~~~G~-----------d~~li~~l~~~-~~iPVIasGGi~s~~d~~~~~~~~G~~g  522 (555)
T 1jvn_A          457 --LTRACEALGAGEILLNCIDKDGSNSGY-----------DLELIEHVKDA-VKIPVIASSGAGVPEHFEEAFLKTRADA  522 (555)
T ss_dssp             --HHHHHHHTTCCEEEECCGGGTTTCSCC-----------CHHHHHHHHHH-CSSCEEECSCCCSHHHHHHHHHHSCCSE
T ss_pred             --HHHHHHHcCCCEEEEeCCCCCCCCCCC-----------CHHHHHHHHHh-CCccEEEECCCCCHHHHHHHHHhcCChH
Confidence              34567899999999999875  33332           38988888775 5899999999999999999998 99999


Q ss_pred             EEecHHhhhCCccchhhhHh
Q 023442          139 VMVGRAAYQNPWYTLGHVDT  158 (282)
Q Consensus       139 VmIGRgal~nP~if~~~~~~  158 (282)
                      ||+||+++.+||.| .+++.
T Consensus       523 vivg~a~~~~~~~~-~e~~~  541 (555)
T 1jvn_A          523 CLGAGMFHRGEFTV-NDVKE  541 (555)
T ss_dssp             EEESHHHHTTSCCH-HHHHH
T ss_pred             HHHHHHHHcCCCCH-HHHHH
Confidence            99999999999996 55544

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.33  E-value=9.1e-12  Score=115.41  Aligned_cols=137  Identities=18%  Similarity=0.117  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCc-------ccC---CCCc-CCcC
Q 023442           28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKA-------LLN---GISP-AENR   94 (282)
Q Consensus        28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~-------~~~---G~~~-ad~~   94 (282)
                      +.++++++++ +++||.||. +|+..  +.++     ++.++++|+|+|+|  |+++.       ...   +... .++ 
T Consensus       170 ~~~~i~~vr~-~~~Pv~vK~-v~~g~--~~e~-----a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~-  239 (332)
T 1vcf_A          170 LVERLAELLP-LPFPVMVKE-VGHGL--SREA-----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEI-  239 (332)
T ss_dssp             HHHHHHHHCS-CSSCEEEEC-SSSCC--CHHH-----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTC-
T ss_pred             HHHHHHHHHc-CCCCEEEEe-cCCCC--CHHH-----HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhc-
Confidence            5788999999 999999994 23322  2222     34678999999999  76641       000   0000 011 


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCcccHHHHH
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVV  174 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~~~~~~  174 (282)
                        .+..++.+.++++...++|||++|||.|.+|+.+++..|||+||+||+++..+          ..|.    ....+++
T Consensus       240 --g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~----------~~G~----~gv~~~~  303 (332)
T 1vcf_A          240 --GIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA----------LEGA----ERVAAWI  303 (332)
T ss_dssp             --SCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH----------TTCH----HHHHHHH
T ss_pred             --cccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH----------hccH----HHHHHHH
Confidence              12247777777765447999999999999999999999999999999765432          0121    1223555


Q ss_pred             HHHHHHHHHHHHhcCC
Q 023442          175 EKYQIYGDAILGTYGN  190 (282)
Q Consensus       175 ~~~~~~~~~~~~~~g~  190 (282)
                      +.+.+.++..+..+|.
T Consensus       304 ~~l~~el~~~m~~~G~  319 (332)
T 1vcf_A          304 GDYLEELRTALFAIGA  319 (332)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            6666666666666664

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.31  E-value=7.7e-12  Score=110.70  Aligned_cols=122  Identities=10%  Similarity=0.076  Sum_probs=90.5

Q ss_pred             ccccccCCHHHHHHHHHHHhh-c--CCccE-------EEEecCCCCCCC--cHHHHHHHHHHHHHhCCCCEEEEecCCcc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAA-N--TNVPV-------SVKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKAL   84 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~-~--~~ipv-------svKiR~G~d~~~--~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~   84 (282)
                      .|+.++.+|+.+.++.+.... .  +.+++       .|++ .||.+..  +..+.    ++.+++.|++.|.+|++++.
T Consensus       103 lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~  177 (252)
T 1ka9_F          103 VNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHV-AGGRVPTGLHAVEW----AVKGVELGAGEILLTSMDRD  177 (252)
T ss_dssp             ECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEE-TTTTEEEEEEHHHH----HHHHHHHTCCEEEEEETTTT
T ss_pred             EChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEE-CCCccccCCcHHHH----HHHHHHcCCCEEEEecccCC
Confidence            588889999999999988752 1  22222       4555 3776532  23332    23456789999999976532


Q ss_pred             --cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhh
Q 023442           85 --LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        85 --~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~  156 (282)
                        ..|           .+|+.+.++++. .++|||++|||.+++|+.+++++||||||+|++++.+||.| .++
T Consensus       178 g~~~g-----------~~~~~i~~l~~~-~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~-~~~  238 (252)
T 1ka9_F          178 GTKEG-----------YDLRLTRMVAEA-VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPI-PKL  238 (252)
T ss_dssp             TTCSC-----------CCHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCH-HHH
T ss_pred             CCcCC-----------CCHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCH-HHH
Confidence              222           138888888775 58999999999999999999999999999999999999885 444

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.31  E-value=1.7e-12  Score=114.67  Aligned_cols=127  Identities=16%  Similarity=0.201  Sum_probs=93.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccE---EEEecCCCCCCC--cHHHHHHHHHHHHHhCCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPV---SVKCRIGVDDHD--SYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipv---svKiR~G~d~~~--~~~e~~~~v~~~le~~Gv~   74 (282)
                      +..||  ..|.    .|+.++.+|+++.++ +...+.+  ++.+   .|++ .||++..  +..++    ++.+++.|++
T Consensus        92 ~~~Ga--d~V~----lg~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~  159 (241)
T 1qo2_A           92 RKLGY--RRQI----VSSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAF-KGWLAEEEIDPVSL----LKRLKEYGLE  159 (241)
T ss_dssp             HHTTC--CEEE----ECHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECC-TTCSSCSCCCHHHH----HHHHHTTTCC
T ss_pred             HHCCC--CEEE----ECchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEE-CCceecCCCCHHHH----HHHHHhCCCC
Confidence            34565  3454    588899999998888 7764332  2223   4455 4787643  33343    3446789999


Q ss_pred             EEEEecCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-c----C-CCEEEecHHhh
Q 023442           75 HFIIHSRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K----G-AHHVMVGRAAY  146 (282)
Q Consensus        75 ~i~VH~Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~----g-~DgVmIGRgal  146 (282)
                      .|.+|.+++.  +.|.           +|+.+.++++. .++|||++|||.|++|+.++++ +    | |||||+|++++
T Consensus       160 ~i~~t~~~~~g~~~g~-----------~~~~i~~l~~~-~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~  227 (241)
T 1qo2_A          160 EIVHTEIEKDGTLQEH-----------DFSLTKKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFL  227 (241)
T ss_dssp             EEEEEETTHHHHTCCC-----------CHHHHHHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHH
T ss_pred             EEEEEeecccccCCcC-----------CHHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHH
Confidence            9999997642  2231           38888888775 4899999999999999999998 5    9 99999999999


Q ss_pred             hCCccc
Q 023442          147 QNPWYT  152 (282)
Q Consensus       147 ~nP~if  152 (282)
                      ..+.-+
T Consensus       228 ~~~~~~  233 (241)
T 1qo2_A          228 EGILTV  233 (241)
T ss_dssp             TTSSCH
T ss_pred             cCCCCH
Confidence            999863

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=99.29  E-value=1.1e-11  Score=109.02  Aligned_cols=103  Identities=12%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEe---cCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKC---RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKi---R~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++.+.+.+++++++++ |+++|+   +.+|++    +++. .++++++++|+|+|  +.+|+.+.|.  +        .
T Consensus       100 ~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~----~~~~-~~a~~a~eaGad~I--~tstg~~~gg--a--------~  161 (225)
T 1mzh_A          100 KYDFVVEELKEIFRETP-SAVHKVIVETPYLNE----EEIK-KAVEICIEAGADFI--KTSTGFAPRG--T--------T  161 (225)
T ss_dssp             CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCH----HHHH-HHHHHHHHHTCSEE--ECCCSCSSSC--C--------C
T ss_pred             ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCH----HHHH-HHHHHHHHhCCCEE--EECCCCCCCC--C--------C
Confidence            34677788999999988 999999   777754    2333 35677889999999  5555432221  1        3


Q ss_pred             HHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442          101 YEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       101 ~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      |+.++.+++.. .++||+++|||+|++|+.++++.|||.|-++++
T Consensus       162 ~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~  206 (225)
T 1mzh_A          162 LEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             HHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence            77777766542 379999999999999999999999997766665

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.28  E-value=1.4e-11  Score=109.07  Aligned_cols=121  Identities=9%  Similarity=0.040  Sum_probs=89.1

Q ss_pred             ccccccCCHHHHHHHHHHHhh-cCCccE---------EEEecCCCCCCC--cHHHHHHHHHHHHHhCCCCEEEEecCCcc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAA-NTNVPV---------SVKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIHSRKAL   84 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~-~~~ipv---------svKiR~G~d~~~--~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~   84 (282)
                      .|+.++.+|+.+.++++.+.. .+.+.+         .|++ .||.+..  +..+.    ++.+++.|++.|.+|.+++.
T Consensus       102 lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~-~g~~~~~~~~~~e~----~~~~~~~G~~~i~~~~~~~~  176 (253)
T 1thf_D          102 INTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFT-YSGKKNTGILLRDW----VVEVEKRGAGEILLTSIDRD  176 (253)
T ss_dssp             ESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEE-TTTTEEEEEEHHHH----HHHHHHTTCSEEEEEETTTT
T ss_pred             EChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEE-CCCccccCCCHHHH----HHHHHHCCCCEEEEEeccCC
Confidence            588889999999999988753 221222         4555 3676532  23332    23456899999999977643


Q ss_pred             cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           85 LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        85 ~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ..+.         ..+|+.+.++++. .++|||++|||.+++|+.+++++|||+||+|++++.+||.+
T Consensus       177 g~~~---------g~~~~~~~~l~~~-~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~  234 (253)
T 1thf_D          177 GTKS---------GYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDV  234 (253)
T ss_dssp             TSCS---------CCCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCH
T ss_pred             CCCC---------CCCHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCH
Confidence            2111         1138888888765 58999999999999999999999999999999999999875

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.21  E-value=2e-11  Score=108.99  Aligned_cols=123  Identities=10%  Similarity=0.023  Sum_probs=77.9

Q ss_pred             cccccc-C--CHHHHHHHHHHHh---hc--CCccE-------EEEecCCCCCCC--cHHHHHHHHHHHHHhCCCCEEEEe
Q 023442           17 FGVSLM-L--DPKFVGEAMSVIA---AN--TNVPV-------SVKCRIGVDDHD--SYNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus        17 yGs~Ll-~--~p~~~~eiv~~v~---~~--~~ipv-------svKiR~G~d~~~--~~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      .|+.++ .  +|+.+.++++...   +.  +.+++       .|+++ ||++..  +..+.    ++.+++.|++.|.+|
T Consensus       102 lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~-g~~~~~~~~~~e~----~~~~~~~G~~~i~~t  176 (266)
T 2w6r_A          102 AASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTH-SGKKNTGILLRDW----VVEVEKRGAGEILLT  176 (266)
T ss_dssp             CCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHH----HHHHHHTTCSEEEEE
T ss_pred             hhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEEC-CCceecchhHHHH----HHHHHHcCCCEEEEE
Confidence            467777 5  8888888877665   22  23333       45664 676421  23333    234578999999999


Q ss_pred             cCCcc--cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhH
Q 023442           80 SRKAL--LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        80 ~Rt~~--~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      .+++.  ..|           .+++.+.++++. .++|||++|||.+++|+.+++++||||||+|++++.+||.+ .++.
T Consensus       177 ~~~~~g~~~g-----------~~~~~i~~l~~~-~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~-~~~~  243 (266)
T 2w6r_A          177 SIDRDGTKSG-----------YDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDM-RELK  243 (266)
T ss_dssp             ETTTTTTCSC-----------CCHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-----------
T ss_pred             eecCCCCcCC-----------CCHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCH-HHHH
Confidence            86542  222           237888787764 58999999999999999999999999999999999999985 5543

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=99.17  E-value=1.1e-10  Score=109.26  Aligned_cols=134  Identities=15%  Similarity=0.068  Sum_probs=89.8

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCC-C----CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIG-V----DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G-~----d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      .+++.||+++.+|.+++.||+++|+++++ -+|.||+... +    .+.+..++.+ .+++.+++.|++.+.++..... 
T Consensus       189 ~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-  266 (358)
T 4a3u_A          189 HRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFI-PAAKMLSDLDIAFLGMREGAVD-  266 (358)
T ss_dssp             CCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHH-HHHHHHHHHTCSEEEEECCBTT-
T ss_pred             CeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHH-HHHHhhhccCcccccccccccc-
Confidence            47899999999999999999999999884 4577766531 1    0111222323 3466778899999999864321 


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                       +..+..  ..++  +  ..++ ++..+.||+. |++.|+++++++++ ..||.|++||+++.||++. +.++
T Consensus       267 -~~~~~~--~~~~--~--a~~i-k~~~~~~v~~-~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp-~k~~  329 (358)
T 4a3u_A          267 -GTFGKT--DQPK--L--SPEI-RKVFKPPLVL-NQDYTFETAQAALDSGVADAISFGRPFIGNPDLP-RRFF  329 (358)
T ss_dssp             -CSSSBC--SSCC--C--HHHH-HHHCCSCEEE-ESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHH-HHHH
T ss_pred             -Cccccc--ccHH--H--HHHH-HHhcCCcEEE-eCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHH-HHHH
Confidence             110000  0111  1  1233 3334667765 56789999999999 4599999999999999984 5443

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=99.16  E-value=9.9e-11  Score=103.69  Aligned_cols=100  Identities=15%  Similarity=0.104  Sum_probs=75.5

Q ss_pred             EEEEecCCCCCCC-cHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC
Q 023442           43 VSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG  121 (282)
Q Consensus        43 vsvKiR~G~d~~~-~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd  121 (282)
                      .+||+|.|++... +..+    +++.++++|++.|++|..+....+.         +.+++.+.++++. .++||+++|+
T Consensus        22 ~~v~~~~~~~~~~~~~~~----~a~~~~~~G~~~i~v~d~~~~~~~~---------~~~~~~i~~i~~~-~~ipvi~~Gg   87 (247)
T 3tdn_A           22 FMVFTYSGKKNTGILLRD----WVVEVEKRGAGEILLTSIDRDGTKS---------GYDTEMIRFVRPL-TTLPIIASGG   87 (247)
T ss_dssp             EEEEETTTTEEEEEEHHH----HHHHHHHTTCSEEEEEETTTTTCSS---------CCCHHHHHHHGGG-CCSCEEEESC
T ss_pred             EEEEEcCCeecCCCCHHH----HHHHHHHcCCCEEEEEecCcccCCC---------cccHHHHHHHHHh-CCCCEEEeCC
Confidence            5788985443222 3333    3556789999999999875432221         1247888888775 5899999999


Q ss_pred             CCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhH
Q 023442          122 INTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus       122 I~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      |.|++|++++++.|||+|++||+++.||+++ .++.
T Consensus        88 i~~~~~~~~~l~~Gad~V~ig~~~l~dp~~~-~~~~  122 (247)
T 3tdn_A           88 AGKMEHFLEAFLRGADKVSINTAAVENPSLI-TQIA  122 (247)
T ss_dssp             CCSHHHHHHHHHTTCSEECCSHHHHHCTHHH-HHHH
T ss_pred             CCCHHHHHHHHHcCCCeeehhhHHhhChHHH-HHHH
Confidence            9999999999999999999999999999975 5543

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=99.13  E-value=1.6e-10  Score=109.80  Aligned_cols=139  Identities=11%  Similarity=0.007  Sum_probs=83.3

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCC-CC-------CCCcHHHHHHHHHHHHHh---CC--CCEEE
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG-VD-------DHDSYNQLCDFIYKVSSL---SP--TRHFI   77 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G-~d-------~~~~~~e~~~~v~~~le~---~G--v~~i~   77 (282)
                      .+++.||+++.+|.+++.||+++|++++ .-||.||+... +.       +.....+... ++..++.   .|  .+.+.
T Consensus       209 ~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~  287 (400)
T 4gbu_A          209 TRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAY-VAGELEKRAKAGKRLAFVH  287 (400)
T ss_dssp             CCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHH-HHHHHHHHHHTTCCCSEEE
T ss_pred             CCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhhHHHHHH-HHHHHHHhhccCcccccee
Confidence            3689999999999999999999999988 35888877531 11       1111222222 2223332   23  34444


Q ss_pred             EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           78 IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        78 VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      +....................     ..+.+++..++|||++|+|.+.+++.+.+. .+||.|.+||++|.||.+. +.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~-----~~~~ir~~~~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~-~k~  361 (400)
T 4gbu_A          288 LVEPRVTNPFLTEGEGEYEGG-----SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLV-DRL  361 (400)
T ss_dssp             EECTTCSSTTSCTTTTCCCSC-----CSTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHH-HHH
T ss_pred             eecccCCCcccccccchhhhH-----HHHHHHHHhCCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHH-HHH
Confidence            432211100000000000001     012233446899999999998777766665 7899999999999999984 444


Q ss_pred             H
Q 023442          157 D  157 (282)
Q Consensus       157 ~  157 (282)
                      +
T Consensus       362 ~  362 (400)
T 4gbu_A          362 E  362 (400)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.12  E-value=2.3e-10  Score=107.59  Aligned_cols=146  Identities=18%  Similarity=0.143  Sum_probs=93.7

Q ss_pred             HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcc--------cC--------CCC
Q 023442           28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKAL--------LN--------GIS   89 (282)
Q Consensus        28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~--------~~--------G~~   89 (282)
                      ..++++.+++.+++||.||. +|+.-.  . +    .++.++++|+|+|+|  ||+|.+        ..        +..
T Consensus       175 ~~~~i~~i~~~~~vPVivK~-vG~g~s--~-~----~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~  246 (368)
T 3vkj_A          175 ALEKLRDISKELSVPIIVKE-SGNGIS--M-E----TAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKN  246 (368)
T ss_dssp             HHHHHHHHHTTCSSCEEEEC-SSSCCC--H-H----HHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEe-CCCCCC--H-H----HHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccc
Confidence            67889999999999999997 776542  2 2    244678999999999  555411        00        000


Q ss_pred             cCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhCCCCCccc
Q 023442           90 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLT  169 (282)
Q Consensus        90 ~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g~~~~~~~  169 (282)
                      -.+|. +|  ....+.++.+...++|||++|||.|..|+.+++..|||+||+||++     ++ ..    ..|.    ..
T Consensus       247 ~~~~g-~p--t~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~-----l~-~~----~~G~----~~  309 (368)
T 3vkj_A          247 FLDWG-VP--TAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPV-----LK-SA----IEGK----ES  309 (368)
T ss_dssp             TTTCS-CB--HHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHH-----HH-HH----HHCH----HH
T ss_pred             ccccc-cc--HHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHH-----HH-HH----hcCh----HH
Confidence            01221 11  1244556655545799999999999999999999999999999854     43 11    1121    12


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 023442          170 RRQVVEKYQIYGDAILGTYGNNRPHVRDVMK  200 (282)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk  200 (282)
                      ..+.++.+.+.++..+...|. + .+..+++
T Consensus       310 v~~~l~~l~~eL~~~m~~~G~-~-~i~el~~  338 (368)
T 3vkj_A          310 LEQFFRKIIFELKAAMMLTGS-K-DVDALKK  338 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC-C-BHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCC-C-CHHHhcc
Confidence            234555555566666666775 2 3555554

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.08  E-value=6.4e-10  Score=97.38  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=87.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhc-----CCc-----cEEEEecCCCCCCC-cHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAAN-----TNV-----PVSVKCRIGVDDHD-SYNQLCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~-----~~i-----pvsvKiR~G~d~~~-~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      .|..++.+|+.+.++.+.....     ++.     +++|++|.++++.. +..+.    ++.+.+.|++.|.+|+++...
T Consensus       105 i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~----~~~~~~~G~d~i~~~~~~~~g  180 (253)
T 1h5y_A          105 VNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKW----AKEVEELGAGEILLTSIDRDG  180 (253)
T ss_dssp             ESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHH----HHHHHHHTCSEEEEEETTTTT
T ss_pred             EChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHH----HHHHHhCCCCEEEEecccCCC
Confidence            3566778899888888876421     122     25888887654321 23332    234567899999999886421


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+.         ...++.+.++.+. .++||+++|||.+.+|+.++++.|||+||+|++++.+++.
T Consensus       181 ~~~---------~~~~~~i~~l~~~-~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~  236 (253)
T 1h5y_A          181 TGL---------GYDVELIRRVADS-VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS  236 (253)
T ss_dssp             TCS---------CCCHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred             CcC---------cCCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence            111         1137888888765 4899999999999999999999999999999999998865

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.03  E-value=1.1e-09  Score=102.80  Aligned_cols=111  Identities=15%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC--Cccc-----CC---CCcCCcC
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KALL-----NG---ISPAENR   94 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R--t~~~-----~G---~~~ad~~   94 (282)
                      .+-+.+.|+.+++.+++||.||. +|+..  +. +.    ++.+.++|+|+|+|+++  |.+.     ..   ....+|.
T Consensus       191 ~~~~~~~I~~l~~~~~~PVivK~-vg~g~--s~-e~----A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g  262 (365)
T 3sr7_A          191 FRSWKKHLSDYAKKLQLPFILKE-VGFGM--DV-KT----IQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWG  262 (365)
T ss_dssp             CHHHHHHHHHHHHHCCSCEEEEE-CSSCC--CH-HH----HHHHHHHTCCEEECCCBC--------------CGGGTTCS
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEE-CCCCC--CH-HH----HHHHHHcCCCEEEEeCCCCcccchhhcccccccccccccc
Confidence            34567889999999999999995 56543  22 22    34567899999999765  3210     00   0001221


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                       +|  ....+..+.....++|||++|||.|..|+.+++..|||+||+||++|
T Consensus       263 -~p--t~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l  311 (365)
T 3sr7_A          263 -QT--TAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML  311 (365)
T ss_dssp             -CB--HHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             -cc--HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence             11  13444443222247999999999999999999999999999999654

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.03  E-value=2e-10  Score=105.12  Aligned_cols=133  Identities=22%  Similarity=0.275  Sum_probs=80.0

Q ss_pred             CCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCC--------------------C-----------
Q 023442            6 CPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--------------------H-----------   54 (282)
Q Consensus         6 CP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~--------------------~-----------   54 (282)
                      ||++...+... |+.++++++.+.+|    ++.+++||.+|+|+|+.+                    .           
T Consensus        49 ~p~~~~~~~~~-G~~~~~~~~~i~~I----~~~~~iPv~~k~r~g~~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~  123 (305)
T 2nv1_A           49 ERVPADIRAAG-GVARMADPTIVEEV----MNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNE  123 (305)
T ss_dssp             CC-------CC-CCCCCCCHHHHHHH----HHHCSSCEEEEECTTCHHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGG
T ss_pred             CCCcchhhhcc-CcccCCCHHHHHHH----HHhCCCCEEecccccchHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhc
Confidence            47776776554 77889998887666    445689999999986510                    0           


Q ss_pred             ---------CcHHHHHHHHHHHHHhCCCCEEEEecCCcc-------------------cCCCCcCCcCC---CCCccHHH
Q 023442           55 ---------DSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------------------LNGISPAENRT---IPPLKYEY  103 (282)
Q Consensus        55 ---------~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-------------------~~G~~~ad~~~---i~~~~~~~  103 (282)
                               .+..+    +.+.+ +.|++.|.+||-...                   ..|.+..+...   -.+..++.
T Consensus       124 ~g~~v~~~~~~~~e----~~~a~-~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~  198 (305)
T 2nv1_A          124 YTVPFVCGCRDLGE----ATRRI-AEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYEL  198 (305)
T ss_dssp             CSSCEEEEESSHHH----HHHHH-HTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHH
T ss_pred             cCCcEEEEeCCHHH----HHHHH-HCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHH
Confidence                     00111    12222 567777777531100                   00110000000   01234777


Q ss_pred             HHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          104 YYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       104 i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +.++.+. .++||+  ++|||.|++|+.++++.|||+|++||+++.++
T Consensus       199 i~~i~~~-~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~  245 (305)
T 2nv1_A          199 LLQIKKD-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSD  245 (305)
T ss_dssp             HHHHHHH-TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSS
T ss_pred             HHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCC
Confidence            7777664 579998  99999999999999999999999999999644

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=98.98  E-value=2.2e-09  Score=94.62  Aligned_cols=107  Identities=14%  Similarity=0.066  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      .+|+.+.++++.+++. ++++.+.+.       +.++     ++.++++|+|.|.+  |++|...  .       .....
T Consensus       113 ~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~ee-----a~~a~~~Gad~Ig~~~~g~t~~~--~-------~~~~~  170 (229)
T 3q58_A          113 SRPVDIDSLLTRIRLH-GLLAMADCS-------TVNE-----GISCHQKGIEFIGTTLSGYTGPI--T-------PVEPD  170 (229)
T ss_dssp             CCSSCHHHHHHHHHHT-TCEEEEECS-------SHHH-----HHHHHHTTCSEEECTTTTSSSSC--C-------CSSCC
T ss_pred             CChHHHHHHHHHHHHC-CCEEEEecC-------CHHH-----HHHHHhCCCCEEEecCccCCCCC--c-------CCCCC
Confidence            4677788888888764 777777543       2333     23456899999964  5555321  1       01224


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~  154 (282)
                      |+.+.++++.  ++|||++|||.|++|+.++++.||||||+| +++.+||.+.+
T Consensus       171 ~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VG-sai~~p~~~~~  221 (229)
T 3q58_A          171 LAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVG-SAITRIEHICQ  221 (229)
T ss_dssp             HHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEEC-HHHHCHHHHHH
T ss_pred             HHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEc-hHhcChHHHHH
Confidence            8888888764  899999999999999999999999999999 55557987543

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=98.95  E-value=3.6e-09  Score=93.42  Aligned_cols=107  Identities=16%  Similarity=0.044  Sum_probs=76.7

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      ..+|+.+.++++.+++. ++++.+.+.       +.++     ++.+++.|+|.|.+  |++|...+.         ...
T Consensus       112 ~~~p~~l~~~i~~~~~~-g~~v~~~v~-------t~ee-----a~~a~~~Gad~Ig~~~~g~t~~~~~---------~~~  169 (232)
T 3igs_A          112 RQRPVAVEALLARIHHH-HLLTMADCS-------SVDD-----GLACQRLGADIIGTTMSGYTTPDTP---------EEP  169 (232)
T ss_dssp             SCCSSCHHHHHHHHHHT-TCEEEEECC-------SHHH-----HHHHHHTTCSEEECTTTTSSSSSCC---------SSC
T ss_pred             cCCHHHHHHHHHHHHHC-CCEEEEeCC-------CHHH-----HHHHHhCCCCEEEEcCccCCCCCCC---------CCC
Confidence            35677788888888764 677776543       2333     23456899999964  455432111         122


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccch
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~  153 (282)
                      .|+.+.++++.  ++|||++|||.|++|+.++++.||||||+|.+++ +|+...
T Consensus       170 ~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~-~p~~~~  220 (232)
T 3igs_A          170 DLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAIT-RLEHIC  220 (232)
T ss_dssp             CHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH-CHHHHH
T ss_pred             CHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhc-CHHHHH
Confidence            48888888764  8999999999999999999999999999995554 788653

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.94  E-value=1.6e-09  Score=102.78  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------cCCcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i   96 (282)
                      +|+.+.++++.+++.+ ++||.++.-      .+.+ .    ++.++++|+|.|.|.      .++....|.+.      
T Consensus       177 ~~~~~~e~i~~ir~~~~~~pviv~~v------~~~~-~----a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~------  239 (404)
T 1eep_A          177 HSTRIIELIKKIKTKYPNLDLIAGNI------VTKE-A----ALDLISVGADCLKVGIGPGSICTTRIVAGVGV------  239 (404)
T ss_dssp             SSHHHHHHHHHHHHHCTTCEEEEEEE------CSHH-H----HHHHHTTTCSEEEECSSCSTTSHHHHHHCCCC------
T ss_pred             ChHHHHHHHHHHHHHCCCCeEEEcCC------CcHH-H----HHHHHhcCCCEEEECCCCCcCcCccccCCCCc------
Confidence            5788999999999988 899988421      1222 2    345678999999992      22211122111      


Q ss_pred             CCccHHHHHHHHh--cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           97 PPLKYEYYYALLR--DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        97 ~~~~~~~i~~l~~--~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      +  .++.+..+.+  ...++|||++|||.|++|+.+++..|||+||+||+++..|+..
T Consensus       240 p--~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~  295 (404)
T 1eep_A          240 P--QITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESP  295 (404)
T ss_dssp             C--HHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSS
T ss_pred             c--hHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCC
Confidence            1  2455444433  1248999999999999999999999999999999999998863

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.90  E-value=6.8e-09  Score=96.04  Aligned_cols=100  Identities=16%  Similarity=0.049  Sum_probs=74.6

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR  109 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~  109 (282)
                      ++++.+++. ++||.+|+.       +.++     ++.+++.|+|.|.++++..  .|..+      ....|+.+.++++
T Consensus       101 ~~i~~l~~~-g~~v~~~v~-------~~~~-----a~~~~~~GaD~i~v~g~~~--GG~~g------~~~~~~ll~~i~~  159 (332)
T 2z6i_A          101 KYMERFHEA-GIIVIPVVP-------SVAL-----AKRMEKIGADAVIAEGMEA--GGHIG------KLTTMTLVRQVAT  159 (332)
T ss_dssp             GTHHHHHHT-TCEEEEEES-------SHHH-----HHHHHHTTCSCEEEECTTS--SEECC------SSCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCeEEEEeC-------CHHH-----HHHHHHcCCCEEEEECCCC--CCCCC------CccHHHHHHHHHH
Confidence            456666653 789998872       2222     2345789999999998632  22211      1224777877776


Q ss_pred             cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      . .++|||++|||.|++++.++++.|||+|++||+++.+|..
T Consensus       160 ~-~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~  200 (332)
T 2z6i_A          160 A-ISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKES  200 (332)
T ss_dssp             H-CSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTC
T ss_pred             h-cCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccc
Confidence            5 4899999999999999999999999999999999999964

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=98.89  E-value=1.8e-09  Score=95.13  Aligned_cols=101  Identities=9%  Similarity=0.086  Sum_probs=75.4

Q ss_pred             EEEEecCCCCCCCc--HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc
Q 023442           43 VSVKCRIGVDDHDS--YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG  120 (282)
Q Consensus        43 vsvKiR~G~d~~~~--~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG  120 (282)
                      ..||+|.||.+...  ..+..+ +++.++++|++.|++|.++....+.         +.+++.+++++ . .++||+++|
T Consensus        13 ~~vk~~~G~~~~~~~~~~~~~~-~a~~~~~~Gad~i~v~d~~~~~~~~---------~~~~~~i~~i~-~-~~ipvi~~G   80 (241)
T 1qo2_A           13 KVARMIKGRKENTIFYEKDPVE-LVEKLIEEGFTLIHVVDLSNAIENS---------GENLPVLEKLS-E-FAEHIQIGG   80 (241)
T ss_dssp             EEEEEGGGCGGGEEEESSCHHH-HHHHHHHTTCCCEEEEEHHHHHHCC---------CTTHHHHHHGG-G-GGGGEEEES
T ss_pred             EEEEEeccccccceecCcCHHH-HHHHHHHcCCCEEEEecccccccCC---------chhHHHHHHHH-h-cCCcEEEEC
Confidence            57899999865421  012222 3456788999999999765321111         12377777776 4 589999999


Q ss_pred             CCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhh
Q 023442          121 GINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus       121 dI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      +|.+.+++.++++.|||+|++|++++.||+++ .++
T Consensus        81 gi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~-~~~  115 (241)
T 1qo2_A           81 GIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFL-KSL  115 (241)
T ss_dssp             SCCSHHHHHHHHHTTCCEEEECHHHHHCTTHH-HHH
T ss_pred             CCCCHHHHHHHHHCCCCEEEECchHhhChHHH-HHH
Confidence            99999999999999999999999999999975 555

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=98.88  E-value=3.3e-09  Score=98.41  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcc----cCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKAL----LNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~----~~G~~~ad~~~i   96 (282)
                      ++....++++.+++.++ .||... .  ..   +. +.    ++.+.++|+|.|.+  |+++..    ..|.+      +
T Consensus       132 ~~~~~~~~i~~lr~~~~~~~vi~G-~--v~---s~-e~----A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g------~  194 (336)
T 1ypf_A          132 HSNAVINMIQHIKKHLPESFVIAG-N--VG---TP-EA----VRELENAGADATKVGIGPGKVCITKIKTGFG------T  194 (336)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEE-E--EC---SH-HH----HHHHHHHTCSEEEECSSCSTTCHHHHHHSCS------S
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEC-C--cC---CH-HH----HHHHHHcCCCEEEEecCCCceeecccccCcC------C
Confidence            67888999999999985 555432 1  11   22 22    34567899999999  765421    11211      1


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      +...++.+.++++. .++|||++|||.|.+|+.+++..|||+||+||+++.-
T Consensus       195 ~g~~~~~l~~v~~~-~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t  245 (336)
T 1ypf_A          195 GGWQLAALRWCAKA-ASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGH  245 (336)
T ss_dssp             TTCHHHHHHHHHHT-CSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTC
T ss_pred             chhHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhcc
Confidence            21136777787765 4899999999999999999999999999999999853

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=98.86  E-value=1.1e-08  Score=89.64  Aligned_cols=102  Identities=12%  Similarity=0.115  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEE--EEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHF--IIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i--~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+.++++.+++.. +.++.+.++       +.++     ++.+.++|+|.|  ++++.+...++.        .+.+++.
T Consensus       119 ~~~~~i~~i~~~~~~~~v~~~~~-------t~~e-----a~~a~~~Gad~i~~~v~g~~~~~~~~--------~~~~~~~  178 (234)
T 1yxy_A          119 DIASFIRQVKEKYPNQLLMADIS-------TFDE-----GLVAHQAGIDFVGTTLSGYTPYSRQE--------AGPDVAL  178 (234)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECS-------SHHH-----HHHHHHTTCSEEECTTTTSSTTSCCS--------SSCCHHH
T ss_pred             cHHHHHHHHHHhCCCCeEEEeCC-------CHHH-----HHHHHHcCCCEEeeeccccCCCCcCC--------CCCCHHH
Confidence            5567888888765 677776553       2233     223568999999  777764211111        1235788


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++++.  ++||+++|||.|++++.++++.|||+|++||+++. |..
T Consensus       179 i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~-p~~  223 (234)
T 1yxy_A          179 IEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR-PKE  223 (234)
T ss_dssp             HHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC-HHH
T ss_pred             HHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC-hHH
Confidence            8888764  89999999999999999999999999999999887 654

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.81  E-value=3.2e-08  Score=87.84  Aligned_cols=127  Identities=15%  Similarity=0.348  Sum_probs=85.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEe--c-------CCCCCCC--cHHHHHHHHHHHHHh
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKC--R-------IGVDDHD--SYNQLCDFIYKVSSL   70 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKi--R-------~G~d~~~--~~~e~~~~v~~~le~   70 (282)
                      |+.|+  .+|+    .|+...++|+++.++.+..-... +-+++-.  +       -||.+..  +..+.    .+.+++
T Consensus        94 l~~Ga--dkVi----i~t~a~~~p~li~e~~~~~g~q~-iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~----~~~~~~  162 (243)
T 4gj1_A           94 LDCGV--KRVV----IGSMAIKDATLCLEILKEFGSEA-IVLALDTILKEDYVVAVNAWQEASDKKLMEV----LDFYSN  162 (243)
T ss_dssp             HHTTC--SEEE----ECTTTTTCHHHHHHHHHHHCTTT-EEEEEEEEESSSEEEC--------CCBHHHH----HHHHHT
T ss_pred             HHcCC--CEEE----EccccccCCchHHHHHhcccCce-EEEEEEEEeCCCCEEEecCceecccchHHHH----HHHHhh
Confidence            56676  6676    58899999999999999875432 2333332  2       1565532  23333    345678


Q ss_pred             CCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           71 SPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        71 ~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .|+..|.+|  .|.++.+|.           +.+.+.++.+..+++|||++||+.|.+|++++ +.+++||.+|++++.+
T Consensus       163 ~g~~eil~t~Id~DGt~~G~-----------d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g  230 (243)
T 4gj1_A          163 KGLKHILCTDISKDGTMQGV-----------NVRLYKLIHEIFPNICIQASGGVASLKDLENL-KGICSGVIVGKALLDG  230 (243)
T ss_dssp             TTCCEEEEEETTC-----CC-----------CHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTT
T ss_pred             cCCcEEEeeeecccccccCC-----------CHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCC
Confidence            999999998  466666664           27777777776678999999999999999876 5579999999998766


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      -.-
T Consensus       231 ~i~  233 (243)
T 4gj1_A          231 VFS  233 (243)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=98.78  E-value=3.7e-08  Score=85.40  Aligned_cols=110  Identities=17%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CH-HHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCc
Q 023442           24 DP-KFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        24 ~p-~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +| ..+.++++.+++.+ +.++.+.+.       +.++.     +.+++.|++.|.+.  +.|....+.      .....
T Consensus       101 ~p~~~~~~~i~~~~~~~~~~~v~~~~~-------t~~e~-----~~~~~~G~d~i~~~~~g~t~~~~~~------~~~~~  162 (223)
T 1y0e_A          101 RPKETLDELVSYIRTHAPNVEIMADIA-------TVEEA-----KNAARLGFDYIGTTLHGYTSYTQGQ------LLYQN  162 (223)
T ss_dssp             CSSSCHHHHHHHHHHHCTTSEEEEECS-------SHHHH-----HHHHHTTCSEEECTTTTSSTTSTTC------CTTHH
T ss_pred             CcccCHHHHHHHHHHhCCCceEEecCC-------CHHHH-----HHHHHcCCCEEEeCCCcCcCCCCCC------CCCcc
Confidence            44 34567788887765 667766442       23332     23568999999763  443211111      00122


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccch
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~  153 (282)
                      .++.+.++++. .++||+++|||.|++++.++++.|||+|++||+++. |+...
T Consensus       163 ~~~~~~~~~~~-~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~-p~~~~  214 (223)
T 1y0e_A          163 DFQFLKDVLQS-VDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR-PKEIT  214 (223)
T ss_dssp             HHHHHHHHHHH-CCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC-HHHHH
T ss_pred             cHHHHHHHHhh-CCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC-cHHHH
Confidence            47778888775 489999999999999999999999999999998665 77543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.77  E-value=1.2e-07  Score=92.43  Aligned_cols=114  Identities=18%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe---cCCcccCCCCcCCcCCCC-C
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH---SRKALLNGISPAENRTIP-P   98 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH---~Rt~~~~G~~~ad~~~i~-~   98 (282)
                      +++...++++++++.+ ++||.+|-   .   .+.++     ++.+.++|+|+|.|.   |.+......  .++ ..+ +
T Consensus       279 ~~~~~~~~i~~i~~~~~~~pvi~~~---v---~t~~~-----a~~l~~aGad~I~vg~~~G~~~~t~~~--~~~-g~~~~  344 (514)
T 1jcn_A          279 NSVYQIAMVHYIKQKYPHLQVIGGN---V---VTAAQ-----AKNLIDAGVDGLRVGMGCGSICITQEV--MAC-GRPQG  344 (514)
T ss_dssp             CSHHHHHHHHHHHHHCTTCEEEEEE---E---CSHHH-----HHHHHHHTCSEEEECSSCSCCBTTBCC--CSC-CCCHH
T ss_pred             cchhHHHHHHHHHHhCCCCceEecc---c---chHHH-----HHHHHHcCCCEEEECCCCCcccccccc--cCC-Cccch
Confidence            4577889999999988 89998862   1   12222     345678999999882   111110000  001 011 2


Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ..+..+.++++. .++|||++|||.+++|+.+++..|||+||+||+++..|+..
T Consensus       345 ~~~~~~~~~~~~-~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~  397 (514)
T 1jcn_A          345 TAVYKVAEYARR-FGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAP  397 (514)
T ss_dssp             HHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSS
T ss_pred             hHHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCC
Confidence            235556666664 48999999999999999999999999999999999999764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.73  E-value=1.2e-08  Score=99.52  Aligned_cols=107  Identities=13%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------cCCcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i   96 (282)
                      +.+.+.++++++++.+ ++||.++.-      .+.++     ++.+.++|+|.|.|-      ..++...|...      
T Consensus       255 ~~~~~~~~i~~ir~~~p~~~Vi~g~v------~t~e~-----a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~------  317 (496)
T 4fxs_A          255 HSEGVLQRIRETRAAYPHLEIIGGNV------ATAEG-----ARALIEAGVSAVKVGIGPGSICTTRIVTGVGV------  317 (496)
T ss_dssp             TSHHHHHHHHHHHHHCTTCCEEEEEE------CSHHH-----HHHHHHHTCSEEEECSSCCTTBCHHHHHCCCC------
T ss_pred             cchHHHHHHHHHHHHCCCceEEEccc------CcHHH-----HHHHHHhCCCEEEECCCCCcCcccccccCCCc------
Confidence            4567788999999987 789988521      12221     344578999999984      22222233211      


Q ss_pred             CCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           97 PPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        97 ~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      |  .+..+.++++.  ..++|||++|||.+++|+.+++..|||+||+|+.+++-.
T Consensus       318 p--~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t~  370 (496)
T 4fxs_A          318 P--QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTE  370 (496)
T ss_dssp             C--HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred             c--HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCC
Confidence            1  25656555442  137999999999999999999999999999999987644

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=98.72  E-value=3.5e-08  Score=93.63  Aligned_cols=109  Identities=16%  Similarity=0.132  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec------CCcccCCCCcCCcCCCC
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS------RKALLNGISPAENRTIP   97 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~------Rt~~~~G~~~ad~~~i~   97 (282)
                      +++.+.++++.+++.+++||.++.=      .+.++     ++.+.++|+|+|.++.      .++...|..      .|
T Consensus       168 ~~~~~~e~I~~ik~~~~i~Vi~g~V------~t~e~-----A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g------~p  230 (400)
T 3ffs_A          168 HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEA-----TKELIENGADGIKVGIGPGSICTTRIVAGVG------VP  230 (400)
T ss_dssp             SBHHHHHHHHHHHTTCCCEEEEEEE------CSHHH-----HHHHHHTTCSEEEECC---------CCSCBC------CC
T ss_pred             CcccHHHHHHHHHhcCCCeEEEeec------CCHHH-----HHHHHHcCCCEEEEeCCCCcCcccccccccc------hh
Confidence            4677788899999888889988531      12222     2356789999999942      111111111      11


Q ss_pred             CccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           98 PLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        98 ~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        .+..+.++++.  ..++|||++|||.+.+|+.+++..|||+||+|+.++.-+.-
T Consensus       231 --~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es  284 (400)
T 3ffs_A          231 --QITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEES  284 (400)
T ss_dssp             --HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTS
T ss_pred             --HHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCC
Confidence              35666665532  24899999999999999999999999999999999887653

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=98.68  E-value=2.2e-08  Score=93.89  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCCC
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTIP   97 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~   97 (282)
                      +++.+.+.++.+++.+++||.++.-      .+.++     ++.+.++|+|.|.|...      ++...|..      .|
T Consensus       129 ~~~~~~~~i~~i~~~~~~~Vivg~v------~t~e~-----A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g------~p  191 (361)
T 3khj_A          129 HSLNIIRTLKEIKSKMNIDVIVGNV------VTEEA-----TKELIENGADGIKVGIGPGSICTTRIVAGVG------VP  191 (361)
T ss_dssp             SBHHHHHHHHHHHHHCCCEEEEEEE------CSHHH-----HHHHHHTTCSEEEECSSCCTTCCHHHHTCBC------CC
T ss_pred             CcHHHHHHHHHHHHhcCCcEEEccC------CCHHH-----HHHHHHcCcCEEEEecCCCcCCCcccccCCC------CC
Confidence            5678888999999888999988532      12222     23467899999999421      11111211      11


Q ss_pred             CccHHHHHHHH---hcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           98 PLKYEYYYALL---RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        98 ~~~~~~i~~l~---~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        .+..+.++.   +. .++|||++|||.+.+|+.+++..|||+||+|++++..+..
T Consensus       192 --~~~~i~~v~~~~~~-~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Es  245 (361)
T 3khj_A          192 --QITAIEKCSSVASK-FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEES  245 (361)
T ss_dssp             --HHHHHHHHHHHHHH-HTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTS
T ss_pred             --cHHHHHHHHHHHhh-cCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcC
Confidence              255554443   32 4799999999999999999999999999999999987764

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.67  E-value=4.9e-08  Score=86.14  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=64.3

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|++.|+++..+....+.         +..++.++++++. .++||+++|+|.+++++.++++.|||+|++|++
T Consensus        36 a~~~~~~Gad~i~v~d~~~~~~~~---------~~~~~~i~~i~~~-~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~  105 (253)
T 1thf_D           36 GKFYSEIGIDELVFLDITASVEKR---------KTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTA  105 (253)
T ss_dssp             HHHHHHTTCCEEEEEESSCSSSHH---------HHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             HHHHHHcCCCEEEEECCchhhcCC---------cccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            456789999999999765422111         1236667777664 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.+|+++ .++
T Consensus       106 ~l~~p~~~-~~~  116 (253)
T 1thf_D          106 AVENPSLI-TQI  116 (253)
T ss_dssp             HHHCTHHH-HHH
T ss_pred             HHhChHHH-HHH
Confidence            99999975 443

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=98.64  E-value=2.8e-07  Score=86.22  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=74.3

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-ccCCCCcCCc-C-CCCCccHHHHHH
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAEN-R-TIPPLKYEYYYA  106 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-~~~G~~~ad~-~-~i~~~~~~~i~~  106 (282)
                      ++++.+++. +++|.+++.       +.++     ++.+++.|+|+|.++++.. .+.|....+. . ..+...|+.+.+
T Consensus       136 ~~i~~~~~~-g~~v~~~v~-------t~~~-----a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~  202 (369)
T 3bw2_A          136 EVIARLRRA-GTLTLVTAT-------TPEE-----ARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQ  202 (369)
T ss_dssp             HHHHHHHHT-TCEEEEEES-------SHHH-----HHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHH
T ss_pred             HHHHHHHHC-CCeEEEECC-------CHHH-----HHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHH
Confidence            445555543 677877652       2222     2345689999999988652 1222210000 0 000113788877


Q ss_pred             HHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          107 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       107 l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      +++. .++|||+.|||.|++++.++++.|||+|++||+++.+|+..
T Consensus       203 i~~~-~~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~  247 (369)
T 3bw2_A          203 VREA-VDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESG  247 (369)
T ss_dssp             HHHH-CSSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCC
T ss_pred             HHHh-cCceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccC
Confidence            7765 48999999999999999999999999999999999999863

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.62  E-value=3.8e-08  Score=95.75  Aligned_cols=107  Identities=16%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------cCCcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i   96 (282)
                      ++..+.++++.+++.+ ++||.++.-      .+.++     ++.+.++|+|+|.|-      ..++...|.+.      
T Consensus       253 ~~~~~~~~v~~i~~~~p~~~Vi~g~v------~t~e~-----a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~------  315 (490)
T 4avf_A          253 HSKGVIERVRWVKQTFPDVQVIGGNI------ATAEA-----AKALAEAGADAVKVGIGPGSICTTRIVAGVGV------  315 (490)
T ss_dssp             SBHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH-----HHHHHHTTCSEEEECSSCSTTCHHHHHTCBCC------
T ss_pred             cchhHHHHHHHHHHHCCCceEEEeee------CcHHH-----HHHHHHcCCCEEEECCCCCcCCCccccCCCCc------
Confidence            4567788899999887 789988521      12222     345678999999982      22222223211      


Q ss_pred             CCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           97 PPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        97 ~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      |  .+..+.++++.  ..++|||++|||.+++|+.++++.|||+||+|++++.-.
T Consensus       316 p--~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~  368 (490)
T 4avf_A          316 P--QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTE  368 (490)
T ss_dssp             C--HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBT
T ss_pred             c--HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCC
Confidence            1  36666666542  237999999999999999999999999999999998754

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.62  E-value=6.2e-08  Score=91.50  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             HHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC--C--cccCCCCcCCcCCCCCccHHHHHHH
Q 023442           32 MSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--K--ALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        32 v~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R--t--~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      +..+++.+++||.+|-   ..   +.++     ++.+.++|+|.|.| ++  +  +...|..        +..++.+.++
T Consensus       203 i~~l~~~~~~pvi~gg---i~---t~e~-----a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g--------~~~~~~l~~v  262 (393)
T 2qr6_A          203 LKEFIGSLDVPVIAGG---VN---DYTT-----ALHMMRTGAVGIIV-GGGENTNSLALGME--------VSMATAIADV  262 (393)
T ss_dssp             HHHHHHHCSSCEEEEC---CC---SHHH-----HHHHHTTTCSEEEE-SCCSCCHHHHTSCC--------CCHHHHHHHH
T ss_pred             HHHHHHhcCCCEEECC---cC---CHHH-----HHHHHHcCCCEEEE-CCCcccccccCCCC--------CChHHHHHHH
Confidence            5666777799999962   22   2222     23456899999999 44  1  1111211        1135556554


Q ss_pred             Hhc-------CC--CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          108 LRD-------FP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       108 ~~~-------~~--~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .+.       ..  ++|||++|||.|.+|+.+++..|||+||+||+++..+.
T Consensus       263 ~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          263 AAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEE  314 (393)
T ss_dssp             HHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTT
T ss_pred             HHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCC
Confidence            443       22  39999999999999999999999999999999999886

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=98.61  E-value=6.7e-08  Score=90.47  Aligned_cols=105  Identities=17%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCC-c---ccCCCCcCCcCCCC
Q 023442           25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRK-A---LLNGISPAENRTIP   97 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt-~---~~~G~~~ad~~~i~   97 (282)
                      ++.+.++++.+++.+ ++||.+|.-      .+.++     ++.+.++|+|+|.|  |+.. .   ...|..      +|
T Consensus       125 ~~~~~e~I~~ir~~~~~~~Vi~G~V------~T~e~-----A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g------~p  187 (361)
T 3r2g_A          125 AKYVGKTLKSLRQLLGSRCIMAGNV------ATYAG-----ADYLASCGADIIKAGIGGGSVCSTRIKTGFG------VP  187 (361)
T ss_dssp             SHHHHHHHHHHHHHHTTCEEEEEEE------CSHHH-----HHHHHHTTCSEEEECCSSSSCHHHHHHHCCC------CC
T ss_pred             cHhHHHHHHHHHHhcCCCeEEEcCc------CCHHH-----HHHHHHcCCCEEEEcCCCCcCccccccCCcc------HH
Confidence            456778899999876 789998721      12222     34567899999998  4321 1   111211      12


Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                        .+..+.++++.. . |||++|||.+..|+.++++.|||+||+||.++....
T Consensus       188 --~l~aI~~~~~~~-~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~E  236 (361)
T 3r2g_A          188 --MLTCIQDCSRAD-R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAP  236 (361)
T ss_dssp             --HHHHHHHHTTSS-S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTT
T ss_pred             --HHHHHHHHHHhC-C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcc
Confidence              356666665432 3 999999999999999999999999999999988754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.59  E-value=9.6e-08  Score=92.67  Aligned_cols=109  Identities=18%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc------ccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA------LLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~------~~~G~~~ad~~~i   96 (282)
                      .+....++++++++.+ ++||.++--      .+.++     ++.+.++|+|+|.|.+...      ...|.      ..
T Consensus       261 ~~~~~~e~i~~i~~~~p~~pvi~g~~------~t~e~-----a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~------g~  323 (494)
T 1vrd_A          261 HSRRVIETLEMIKADYPDLPVVAGNV------ATPEG-----TEALIKAGADAVKVGVGPGSICTTRVVAGV------GV  323 (494)
T ss_dssp             SSHHHHHHHHHHHHHCTTSCEEEEEE------CSHHH-----HHHHHHTTCSEEEECSSCSTTCHHHHHHCC------CC
T ss_pred             chHHHHHHHHHHHHHCCCceEEeCCc------CCHHH-----HHHHHHcCCCEEEEcCCCCccccccccCCC------Cc
Confidence            4567778899999988 799988631      12332     2345789999999943211      11111      11


Q ss_pred             CCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           97 PPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        97 ~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      |  .+..+..+.+.  ..++|||++|||.+++|+.+++..|||+||+||+++..|..
T Consensus       324 p--~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~  378 (494)
T 1vrd_A          324 P--QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEA  378 (494)
T ss_dssp             C--HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTS
T ss_pred             c--HHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcC
Confidence            2  13433333221  24899999999999999999999999999999999998876

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.57  E-value=6.6e-07  Score=82.32  Aligned_cols=101  Identities=16%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHh
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR  109 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~  109 (282)
                      ++++.+++. ++|+.+++.       +.++     ++.+.+.|+|.|.+++++.  .|.....    ....|+.+.++++
T Consensus       109 ~~~~~l~~~-gi~vi~~v~-------t~~~-----a~~~~~~GaD~i~v~g~~~--GG~~G~~----~~~~~~~l~~v~~  169 (328)
T 2gjl_A          109 EHIAEFRRH-GVKVIHKCT-------AVRH-----ALKAERLGVDAVSIDGFEC--AGHPGED----DIPGLVLLPAAAN  169 (328)
T ss_dssp             HHHHHHHHT-TCEEEEEES-------SHHH-----HHHHHHTTCSEEEEECTTC--SBCCCSS----CCCHHHHHHHHHT
T ss_pred             HHHHHHHHc-CCCEEeeCC-------CHHH-----HHHHHHcCCCEEEEECCCC--CcCCCCc----cccHHHHHHHHHH
Confidence            455666554 778776652       2222     2245689999999998753  2221110    1235888888776


Q ss_pred             cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       110 ~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      . .++||+++|||.+++++.++++.|||+|++||+++..|.
T Consensus       170 ~-~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e  209 (328)
T 2gjl_A          170 R-LRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRE  209 (328)
T ss_dssp             T-CCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred             h-cCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence            4 589999999999999999999999999999999999987

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.54  E-value=1.8e-07  Score=82.43  Aligned_cols=81  Identities=15%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|++.|.++..+....+         .+..++.+.++++. .++||+++|+|.+.++++++++.|||+|++|++
T Consensus        37 a~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~~~-~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~  106 (252)
T 1ka9_F           37 ARAYDEAGADELVFLDISATHEE---------RAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA  106 (252)
T ss_dssp             HHHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             HHHHHHcCCCEEEEEcCCccccC---------ccccHHHHHHHHHh-CCCCEEEECCcCCHHHHHHHHHcCCCEEEEChH
Confidence            45678899999999965432111         11235667777664 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.+|+++ .++
T Consensus       107 ~l~~p~~~-~~~  117 (252)
T 1ka9_F          107 AVRRPELI-REL  117 (252)
T ss_dssp             HHHCTHHH-HHH
T ss_pred             HHhCcHHH-HHH
Confidence            99999874 444

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=98.52  E-value=1.3e-07  Score=88.82  Aligned_cols=109  Identities=13%  Similarity=0.112  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------cCCcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i   96 (282)
                      +++.+.+.++.+++.. ++||.+..=      .+.++     ++.+.++|+|.|.+-      ..|+...|..      .
T Consensus       132 ~~~~~~~~I~~ik~~~p~v~Vi~G~v------~t~e~-----A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g------~  194 (366)
T 4fo4_A          132 HSEGVLQRIRETRAAYPHLEIIGGNV------ATAEG-----ARALIEAGVSAVKVGIGPGSICTTRIVTGVG------V  194 (366)
T ss_dssp             TSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHH-----HHHHHHHTCSEEEECSSCSTTBCHHHHHCCC------C
T ss_pred             CCHHHHHHHHHHHHhcCCCceEeeee------CCHHH-----HHHHHHcCCCEEEEecCCCCCCCcccccCcc------c
Confidence            4567788889998877 788876421      12222     234568999999992      1111111111      1


Q ss_pred             CCccHHHHHHHHh--cCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           97 PPLKYEYYYALLR--DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        97 ~~~~~~~i~~l~~--~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +  .+..+.++++  ...++|||+.|||.+++|+.+++..|||+||+|+.++.-+.-
T Consensus       195 p--~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Es  249 (366)
T 4fo4_A          195 P--QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEA  249 (366)
T ss_dssp             C--HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTS
T ss_pred             c--hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCC
Confidence            1  2555555543  124899999999999999999999999999999999886653

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=98.50  E-value=7.9e-07  Score=81.99  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             HHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 023442           31 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD  110 (282)
Q Consensus        31 iv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~  110 (282)
                      +++.+++. +++|.+++.       +.++     ++.+.+.|+|.|.++++..  .|.++      ....|+.+.++++.
T Consensus       116 ~~~~l~~~-g~~v~~~v~-------s~~~-----a~~a~~~GaD~i~v~g~~~--GG~~G------~~~~~~ll~~i~~~  174 (326)
T 3bo9_A          116 YIRELKEN-GTKVIPVVA-------SDSL-----ARMVERAGADAVIAEGMES--GGHIG------EVTTFVLVNKVSRS  174 (326)
T ss_dssp             HHHHHHHT-TCEEEEEES-------SHHH-----HHHHHHTTCSCEEEECTTS--SEECC------SSCHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCcEEEEcC-------CHHH-----HHHHHHcCCCEEEEECCCC--CccCC------CccHHHHHHHHHHH
Confidence            44455443 678877662       2222     2345689999999998752  22211      11248888887765


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                       .++|||++|||.|.+|+.++++.|||+|++|++++..+..
T Consensus       175 -~~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~  214 (326)
T 3bo9_A          175 -VNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVES  214 (326)
T ss_dssp             -CSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSC
T ss_pred             -cCCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccc
Confidence             4899999999999999999999999999999999998874

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.47  E-value=3.4e-07  Score=80.19  Aligned_cols=77  Identities=23%  Similarity=0.242  Sum_probs=62.2

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|+++|+++..+..+.+.         +. .+.++++++. .++||+.+|+|.|+++++.+++.|||+|++|++
T Consensus        37 a~~~~~~Gad~i~v~~~d~~~~~~---------~~-~~~i~~i~~~-~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~  105 (244)
T 2y88_A           37 ALGWQRDGAEWIHLVDLDAAFGRG---------SN-HELLAEVVGK-LDVQVELSGGIRDDESLAAALATGCARVNVGTA  105 (244)
T ss_dssp             HHHHHHTTCSEEEEEEHHHHTTSC---------CC-HHHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHcCCCEEEEEcCcccccCC---------Ch-HHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHcCCCEEEECch
Confidence            456788999999999765432221         11 2666777765 489999999999999999999999999999999


Q ss_pred             hhhCCccc
Q 023442          145 AYQNPWYT  152 (282)
Q Consensus       145 al~nP~if  152 (282)
                      ++.||+.+
T Consensus       106 ~l~~p~~~  113 (244)
T 2y88_A          106 ALENPQWC  113 (244)
T ss_dssp             HHHCHHHH
T ss_pred             HhhChHHH
Confidence            99999875

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.46  E-value=3.6e-07  Score=80.25  Aligned_cols=77  Identities=22%  Similarity=0.248  Sum_probs=62.2

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|+++|+++..+..+.+.         +.. +.+.++++. .++||+.+|+|.|+++++.+++.|||+|++|+.
T Consensus        38 a~~~~~~Gad~i~v~~~d~~~~~~---------~~~-~~i~~i~~~-~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~  106 (244)
T 1vzw_A           38 ALAWQRSGAEWLHLVDLDAAFGTG---------DNR-ALIAEVAQA-MDIKVELSGGIRDDDTLAAALATGCTRVNLGTA  106 (244)
T ss_dssp             HHHHHHTTCSEEEEEEHHHHHTSC---------CCH-HHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHcCCCEEEEecCchhhcCC---------ChH-HHHHHHHHh-cCCcEEEECCcCCHHHHHHHHHcCCCEEEECch
Confidence            456788999999999765433221         112 556677665 589999999999999999999999999999999


Q ss_pred             hhhCCccc
Q 023442          145 AYQNPWYT  152 (282)
Q Consensus       145 al~nP~if  152 (282)
                      ++.||+.+
T Consensus       107 ~l~~p~~~  114 (244)
T 1vzw_A          107 ALETPEWV  114 (244)
T ss_dssp             HHHCHHHH
T ss_pred             HhhCHHHH
Confidence            99999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.41  E-value=2.4e-07  Score=90.61  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------cCCcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------SRKALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------~Rt~~~~G~~~ad~~~i   96 (282)
                      ++..+.++++++++.. ++||.++-=      .+.++     ++.+.++|+|+|.|-      ..++...|.+.      
T Consensus       280 ~~~~v~~~i~~i~~~~~~~~vi~g~v------~t~e~-----a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~------  342 (511)
T 3usb_A          280 HSQGVIDKVKEVRAKYPSLNIIAGNV------ATAEA-----TKALIEAGANVVKVGIGPGSICTTRVVAGVGV------  342 (511)
T ss_dssp             TSHHHHHHHHHHHHHCTTSEEEEEEE------CSHHH-----HHHHHHHTCSEEEECSSCSTTCCHHHHHCCCC------
T ss_pred             chhhhhhHHHHHHHhCCCceEEeeee------ccHHH-----HHHHHHhCCCEEEECCCCccccccccccCCCC------
Confidence            4566778888888876 478887631      12222     345678999999982      22222223211      


Q ss_pred             CCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           97 PPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        97 ~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      |  .+..+.++   +++ .++|||++|||.+++|+.+++..|||+||+||.++.-.
T Consensus       343 p--~~~~l~~v~~~~~~-~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~  395 (511)
T 3usb_A          343 P--QLTAVYDCATEARK-HGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVA  395 (511)
T ss_dssp             C--HHHHHHHHHHHHHT-TTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred             C--cHHHHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCc
Confidence            1  24554444   333 37999999999999999999999999999999875544

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=98.38  E-value=3.6e-06  Score=75.11  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhcCCccEEEEec-CCCC--CCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           28 VGEAMSVIAANTNVPVSVKCR-IGVD--DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        28 ~~eiv~~v~~~~~ipvsvKiR-~G~d--~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.++++..++ .++|+.+.+- .|++  ...+..+ ...+++.++++|+|.|.+|..                 ..++.+
T Consensus       134 ~~~v~~~~~~-~g~~viv~~~~~G~~l~~~~~~~~-~~~~a~~a~~~Gad~i~~~~~-----------------~~~~~l  194 (273)
T 2qjg_A          134 LGMIAETCEY-WGMPLIAMMYPRGKHIQNERDPEL-VAHAARLGAELGADIVKTSYT-----------------GDIDSF  194 (273)
T ss_dssp             HHHHHHHHHH-HTCCEEEEEEECSTTCSCTTCHHH-HHHHHHHHHHTTCSEEEECCC-----------------SSHHHH
T ss_pred             HHHHHHHHHH-cCCCEEEEeCCCCcccCCCCCHhH-HHHHHHHHHHcCCCEEEECCC-----------------CCHHHH
Confidence            3344444332 4788888752 1221  0011222 223445678999999999830                 137888


Q ss_pred             HHHHhcCCCceEEEccCCCC--HHHHHH----HHHcCCCEEEecHHhhhCCccc
Q 023442          105 YALLRDFPDLTFTLNGGINT--VDEVNA----ALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s--~eda~~----~l~~g~DgVmIGRgal~nP~if  152 (282)
                      .++++. .++||+++|||.+  .+|+.+    +++.||+||++||+++.+|+.+
T Consensus       195 ~~i~~~-~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~  247 (273)
T 2qjg_A          195 RDVVKG-CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVV  247 (273)
T ss_dssp             HHHHHH-CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHH
T ss_pred             HHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHH
Confidence            888765 4899999999994  888555    4458999999999999999974

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.36  E-value=9e-07  Score=77.15  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|++.|++|..+....+         .+..++.+.++++. .++||+++|+|.++++++++++.|||+|++|+.
T Consensus        39 a~~~~~~G~d~i~v~~~~~~~~~---------~~~~~~~i~~i~~~-~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~  108 (253)
T 1h5y_A           39 AVRYEEEGADEIAILDITAAPEG---------RATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA  108 (253)
T ss_dssp             HHHHHHTTCSCEEEEECCCCTTT---------HHHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             HHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChH
Confidence            45678999999999965432111         11235667777765 489999999999999999999999999999999


Q ss_pred             hhhCCccc
Q 023442          145 AYQNPWYT  152 (282)
Q Consensus       145 al~nP~if  152 (282)
                      ++.+|+++
T Consensus       109 ~~~~~~~~  116 (253)
T 1h5y_A          109 AVRNPQLV  116 (253)
T ss_dssp             HHHCTHHH
T ss_pred             HhhCcHHH
Confidence            99999975

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.35  E-value=9.7e-07  Score=82.34  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=72.9

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC------cccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK------ALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt------~~~~G~~~ad~~~i   96 (282)
                      ++..+.+.++.+++.+ ++||.+|.=.      +.++     ++.+.++|+|.|.|....      +...|.      .+
T Consensus       144 ~~~~~~~~i~~lr~~~~~~~vi~g~v~------t~e~-----A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~------~~  206 (351)
T 2c6q_A          144 YSEHFVEFVKDVRKRFPQHTIMAGNVV------TGEM-----VEELILSGADIIKVGIGPGSVCTTRKKTGV------GY  206 (351)
T ss_dssp             TBHHHHHHHHHHHHHCTTSEEEEEEEC------SHHH-----HHHHHHTTCSEEEECSSCSTTBCHHHHHCB------CC
T ss_pred             CcHHHHHHHHHHHHhcCCCeEEEEeCC------CHHH-----HHHHHHhCCCEEEECCCCCcCcCccccCCC------Cc
Confidence            4667788899999988 8999887421      2222     235678999999884211      111111      11


Q ss_pred             CCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           97 PPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        97 ~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      |.  ...+.++   ++. .++|||+.|||.|..|+.+++..|||+||+||.++.-+
T Consensus       207 p~--~~~l~~v~~~~~~-~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~  259 (351)
T 2c6q_A          207 PQ--LSAVMECADAAHG-LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHS  259 (351)
T ss_dssp             CH--HHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred             cH--HHHHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCc
Confidence            21  3333333   333 37999999999999999999999999999999998643

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=98.32  E-value=9.7e-06  Score=72.18  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=58.6

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.+..++..   -|.+    .  .-.+++.+..+++. +++|||+.|||.|++|+.++++.|||||++|.+
T Consensus       149 akrl~~~G~~aVmPlg~p---IGsG----~--Gi~~~~lI~~I~e~-~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSA  218 (265)
T 1wv2_A          149 ARQLAEIGCIAVMPLAGL---IGSG----L--GICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTA  218 (265)
T ss_dssp             HHHHHHSCCSEEEECSSS---TTCC----C--CCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             HHHHHHhCCCEEEeCCcc---CCCC----C--CcCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence            556778899888887753   1211    0  11247888777774 689999999999999999999999999999998


Q ss_pred             hhh--CCcc
Q 023442          145 AYQ--NPWY  151 (282)
Q Consensus       145 al~--nP~i  151 (282)
                      +..  ||-.
T Consensus       219 I~~a~dP~~  227 (265)
T 1wv2_A          219 IAHAKDPVM  227 (265)
T ss_dssp             HHTSSSHHH
T ss_pred             HhCCCCHHH
Confidence            853  4543

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=98.32  E-value=6.2e-06  Score=77.39  Aligned_cols=107  Identities=7%  Similarity=0.028  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +++...+++++|++++ ++++.++.+-||+.    ++..+ +++.+++.|+++|.        +..        ++-+|+
T Consensus       173 ~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~~~~~  231 (384)
T 2pgw_A          173 GEKLDLEITAAVRGEIGDARLRLDANEGWSV----HDAIN-MCRKLEKYDIEFIE--------QPT--------VSWSIP  231 (384)
T ss_dssp             CHHHHHHHHHHHHTTSTTCEEEEECTTCCCH----HHHHH-HHHHHGGGCCSEEE--------CCS--------CTTCHH
T ss_pred             CHHHHHHHHHHHHHHcCCcEEEEecCCCCCH----HHHHH-HHHHHHhcCCCEEe--------CCC--------ChhhHH
Confidence            7899999999999998 68999999888854    34344 45678899999885        111        222477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      ...++.+. .++||+++|.+.|+++++++++ ..||+|++..+.++.++-+
T Consensus       232 ~~~~l~~~-~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~  281 (384)
T 2pgw_A          232 AMAHVREK-VGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPM  281 (384)
T ss_dssp             HHHHHHHH-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHH
T ss_pred             HHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHH
Confidence            77788765 5899999999999999999999 7799999999999998864

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.31  E-value=4.8e-06  Score=75.93  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             HHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++.+.++.+. .++||+  +.|||.|++|+.++++.|||+|++|++++..+.
T Consensus       196 ~~ll~~i~~~-~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~d  246 (297)
T 4adt_A          196 IDLILLTRKL-KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESEN  246 (297)
T ss_dssp             HHHHHHHHHH-TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSC
T ss_pred             HHHHHHHHHh-cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCC
Confidence            6666666665 467776  999999999999999999999999999997554

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.27  E-value=4.9e-06  Score=71.00  Aligned_cols=79  Identities=11%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             HHHhCCCCEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~R--t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+...|+..+.+++.  ++..+|.           .++.+.++.+. .++|||+.|++.+++++.++++.|+|+|++|++
T Consensus       138 ~~~~~~~~~vli~~~~~~g~~~g~-----------~~~~i~~~~~~-~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a  205 (237)
T 3cwo_X          138 EVEKRGAGEILLTSIDRDGTKSGY-----------DTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADAALAASV  205 (237)
T ss_dssp             HHHHHTCSEEEEEETTTTTCCSCC-----------CHHHHHHHGGG-CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             HHhhcCCCeEEEEecCCCCccccc-----------cHHHHHHHHHh-cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHH
Confidence            345678888888874  3333332           25667676554 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhhHh
Q 023442          145 AYQNPWYTLGHVDT  158 (282)
Q Consensus       145 al~nP~if~~~~~~  158 (282)
                      ++.+||.| .++.+
T Consensus       206 ~~~~~~~~-~~~~~  218 (237)
T 3cwo_X          206 FHFREIDV-RELKE  218 (237)
T ss_dssp             HHTTSSCH-HHHHH
T ss_pred             HHcCCCCH-HHHHH
Confidence            99999985 55544

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=98.24  E-value=5.9e-06  Score=74.83  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             cHHHHHHHHhcCCCceEE--EccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          100 KYEYYYALLRDFPDLTFT--LNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      .++.+.++++. .++||+  +.|||.|++|+.++++.|||+|++|++++..+
T Consensus       195 ~~~~i~~l~~~-~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~  245 (297)
T 2zbt_A          195 PFELVKWVHDH-GRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG  245 (297)
T ss_dssp             CHHHHHHHHHH-SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSS
T ss_pred             hHHHHHHHHHh-cCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCC
Confidence            46667777664 478988  99999999999999999999999999999543

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=98.13  E-value=2.9e-05  Score=69.86  Aligned_cols=104  Identities=10%  Similarity=0.138  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++.+.++++..++ .++.+.+-+       .+.+++.    +. .+.|++.|-+.+|+.....           ++++.
T Consensus       147 ~~~~l~~l~~~a~~-lGl~~lvev-------~t~ee~~----~A-~~~Gad~IGv~~r~l~~~~-----------~dl~~  202 (272)
T 3qja_A          147 EQSVLVSMLDRTES-LGMTALVEV-------HTEQEAD----RA-LKAGAKVIGVNARDLMTLD-----------VDRDC  202 (272)
T ss_dssp             CHHHHHHHHHHHHH-TTCEEEEEE-------SSHHHHH----HH-HHHTCSEEEEESBCTTTCC-----------BCTTH
T ss_pred             CHHHHHHHHHHHHH-CCCcEEEEc-------CCHHHHH----HH-HHCCCCEEEECCCcccccc-----------cCHHH
Confidence            45667777777655 476665544       2334432    22 3579999999987531111           12455


Q ss_pred             HHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++++..+ ++||++.|||.|++|+.++.+.|+|||.||++++..+..
T Consensus       203 ~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp  251 (272)
T 3qja_A          203 FARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDP  251 (272)
T ss_dssp             HHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCH
T ss_pred             HHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCH
Confidence            566766554 799999999999999999999999999999999987775

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.11  E-value=3.6e-06  Score=74.62  Aligned_cols=78  Identities=10%  Similarity=0.009  Sum_probs=59.4

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.++++|++.|.++..+....+.         ...++.+.++.+. .++||+.+|+|.+.+++.++++.|||+|++|+.
T Consensus        36 a~~~~~~Ga~~i~v~d~~~~~~~~---------g~~~~~i~~i~~~-~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~  105 (266)
T 2w6r_A           36 VVEVEKRGAGEILLTSIDRDGTKS---------GYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKALAASV  105 (266)
T ss_dssp             HHHHHHHTCSEEEEEETTTSSCSS---------CCCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEEECCCC
T ss_pred             HHHHHHCCCCEEEEEecCcccCCC---------cccHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHH
Confidence            456678999999998654321111         1137777777665 589999999999999999999999999999999


Q ss_pred             hh-h--CCccc
Q 023442          145 AY-Q--NPWYT  152 (282)
Q Consensus       145 al-~--nP~if  152 (282)
                      ++ .  +|..+
T Consensus       106 ~~~~~~~~~~~  116 (266)
T 2w6r_A          106 FHFREIDMREL  116 (266)
T ss_dssp             C------CHHH
T ss_pred             HHhCCCCHHHH
Confidence            99 5  88875

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.06  E-value=1.6e-05  Score=74.84  Aligned_cols=103  Identities=14%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++.+.++++.+++. ++|+.++++.  .   ...+.    ++.+.++|++.+.+|++... ++...      +...|+.
T Consensus       140 d~~~~~~~i~~~~~~-g~~v~~~v~~--~---~~~e~----a~~~~~agad~i~i~~~~~~-~~~~~------~~~~~~~  202 (393)
T 2qr6_A          140 DTELLSERIAQVRDS-GEIVAVRVSP--Q---NVREI----APIVIKAGADLLVIQGTLIS-AEHVN------TGGEALN  202 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TSCCEEEECT--T---THHHH----HHHHHHTTCSEEEEECSSCC-SSCCC------C-----C
T ss_pred             CHHHHHHHHHHHhhc-CCeEEEEeCC--c---cHHHH----HHHHHHCCCCEEEEeCCccc-cccCC------CcccHHH
Confidence            889999999999886 8999998864  1   12232    23456789999999976521 11100      1113566


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      +.++++. .++||++ |+|.|+++++.+++.|||+|++|+|.
T Consensus       203 i~~l~~~-~~~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~Gg  242 (393)
T 2qr6_A          203 LKEFIGS-LDVPVIA-GGVNDYTTALHMMRTGAVGIIVGGGE  242 (393)
T ss_dssp             HHHHHHH-CSSCEEE-ECCCSHHHHHHHHTTTCSEEEESCCS
T ss_pred             HHHHHHh-cCCCEEE-CCcCCHHHHHHHHHcCCCEEEECCCc
Confidence            6667665 4899998 99999999999999999999998854

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=98.05  E-value=2.3e-05  Score=84.11  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCCCc
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPPL   99 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~~~   99 (282)
                      +++.+.++++.+++.. ++||.||.=.+.    ...+    .++.+.++|+|.|+|.|..... |.++.   ++-.+|. 
T Consensus       976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~----gi~~----~A~~a~~AGAD~IvVsG~eGGT-gasp~~~~~~~G~Pt- 1045 (1479)
T 1ea0_A          976 SIEDLAQLIYDLKQINPDAKVTVKLVSRS----GIGT----IAAGVAKANADIILISGNSGGT-GASPQTSIKFAGLPW- 1045 (1479)
T ss_dssp             SHHHHHHHHHHHHHHCTTCEEEEEEECCT----THHH----HHHHHHHTTCSEEEEECTTCCC-SSEETTHHHHSCCCH-
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCCC----ChHH----HHHHHHHcCCcEEEEcCCCCCC-CCCchhhhcCCchhH-
Confidence            3567889999999988 899999985432    1122    2345678999999997643110 10110   0011221 


Q ss_pred             cHHHHHHHHh---cC---CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          100 KYEYYYALLR---DF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       100 ~~~~i~~l~~---~~---~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                       ...+.++.+   ..   .++|||+.|||.|..|+.+++..|||+|++||++|.
T Consensus      1046 -~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A         1046 -EMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLI 1098 (1479)
T ss_dssp             -HHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHH
Confidence             122333322   11   379999999999999999999999999999999976

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=98.04  E-value=0.00011  Score=66.19  Aligned_cols=114  Identities=12%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++.+.++++..++ .+..+.|-+.       +.+|+    . .+.+.|++.|-+..|+-.  ..         .++++.
T Consensus       154 ~~~~l~~l~~~a~~-lGl~~lvevh-------~~eEl----~-~A~~~ga~iIGinnr~l~--t~---------~~dl~~  209 (272)
T 3tsm_A          154 DDDLAKELEDTAFA-LGMDALIEVH-------DEAEM----E-RALKLSSRLLGVNNRNLR--SF---------EVNLAV  209 (272)
T ss_dssp             CHHHHHHHHHHHHH-TTCEEEEEEC-------SHHHH----H-HHTTSCCSEEEEECBCTT--TC---------CBCTHH
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHH----H-HHHhcCCCEEEECCCCCc--cC---------CCChHH
Confidence            45667777777655 3666655542       33443    2 234789999999887521  11         123566


Q ss_pred             HHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhC
Q 023442          104 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG  162 (282)
Q Consensus       104 i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g  162 (282)
                      ..++++..+ ++|+|+-|||.|++|+.++.+.|+|||.||.+++..+++ ...+++...|
T Consensus       210 ~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~-~~~~~~l~~g  268 (272)
T 3tsm_A          210 SERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDV-AAATRALLTG  268 (272)
T ss_dssp             HHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCH-HHHHHHHHHC
T ss_pred             HHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCH-HHHHHHHHhc
Confidence            667776655 699999999999999999999999999999999999986 3444444444

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=98.03  E-value=2.3e-05  Score=73.19  Aligned_cols=107  Identities=10%  Similarity=-0.006  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++..+ +++.+++.|+++|.        +..        ++-+|
T Consensus       173 ~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~~d~  231 (371)
T 2ovl_A          173 DLKEDVDRVSALREHLGDSFPLMVDANMKWTV----DGAIR-AARALAPFDLHWIE--------EPT--------IPDDL  231 (371)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEE--------CCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CCC--------CcccH
Confidence            6788889999999987  68999999988864    34344 35678899999873        111        22247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +...++.+. .++||++++.+.|+++++++++ ..||.|++..+-++.++-+
T Consensus       232 ~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~  282 (371)
T 2ovl_A          232 VGNARIVRE-SGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTF  282 (371)
T ss_dssp             HHHHHHHHH-HCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHH
T ss_pred             HHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHH
Confidence            777777765 4799999999999999999998 7899999987777776643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.00  E-value=1.4e-05  Score=77.24  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC------CcccCCCCcCCcCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR------KALLNGISPAENRTI   96 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i   96 (282)
                      +.+...+.++.+++.+ ++|+..+-   ..   +. +.    ++.+.++|++.|.|...      ++...|..      .
T Consensus       257 ~~~~~~~~i~~l~~~~p~~pvi~G~---v~---t~-~~----a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~------~  319 (491)
T 1zfj_A          257 HSAGVLRKIAEIRAHFPNRTLIAGN---IA---TA-EG----ARALYDAGVDVVKVGIGPGSICTTRVVAGVG------V  319 (491)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCEEEEE---EC---SH-HH----HHHHHHTTCSEEEECSSCCTTBCHHHHTCCC------C
T ss_pred             cchhHHHHHHHHHHHCCCCcEeCCC---cc---CH-HH----HHHHHHcCCCEEEECccCCcceEEeeecCCC------C
Confidence            4455667788888887 78887441   11   12 21    22456899999988411      11222211      1


Q ss_pred             CCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           97 PPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        97 ~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      |  ..+.+.++...  ..++|||+.|||.+.+|+.+++..|||+||+||+++..+..
T Consensus       320 p--~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~  374 (491)
T 1zfj_A          320 P--QVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEA  374 (491)
T ss_dssp             C--HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSC
T ss_pred             C--cHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcC
Confidence            1  24555444431  14799999999999999999999999999999999976654

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=97.99  E-value=1.8e-05  Score=85.11  Aligned_cols=116  Identities=17%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCCC
Q 023442           23 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIPP   98 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~~   98 (282)
                      .+++-+.++++.+++.. ++||.||.=.+.    ...+    .++.+.++|+|.|+|.+...- .|.++.   ++-.+|.
T Consensus      1010 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~----gi~~----~A~~a~kAGAD~IvVsG~eGG-Tgasp~~~~~~~GlPt 1080 (1520)
T 1ofd_A         1010 YSIEDLAQLIYDLHQINPEAQVSVKLVAEI----GIGT----IAAGVAKANADIIQISGHDGG-TGASPLSSIKHAGSPW 1080 (1520)
T ss_dssp             SSHHHHHHHHHHHHHHCTTSEEEEEEECST----THHH----HHHHHHHTTCSEEEEECTTCC-CSSEEHHHHHHBCCCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEEecCCC----ChHH----HHHHHHHcCCCEEEEeCCCCc-cCCCcchhhcCCchhH
Confidence            34677889999999988 899999985431    1122    234567899999999765321 010110   0011221


Q ss_pred             ccHHHHHHH---HhcC---CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           99 LKYEYYYAL---LRDF---PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        99 ~~~~~i~~l---~~~~---~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                        ...+.++   ....   .++|||+.|||.|..|+.+++..|||+|++||++|.-.
T Consensus      1081 --~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A         1081 --ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp             --HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHT
T ss_pred             --HHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHH
Confidence              1223232   2211   26999999999999999999999999999999997644

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=97.97  E-value=2e-05  Score=68.04  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             HHhCCCCEEEEecC--CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           68 SSLSPTRHFIIHSR--KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        68 le~~Gv~~i~VH~R--t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      +.+.|+|+|.+..-  +....|.        ++..|+.+.++.+.. ++||++.||| |++++.++++.|+|+|++|+++
T Consensus       126 a~~~gaD~i~~~~~f~~~~~~g~--------~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i  195 (221)
T 1yad_A          126 AEKEDADYVLFGHVFETDCKKGL--------EGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGI  195 (221)
T ss_dssp             HHHTTCSEEEEECCC------------------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEESHHH
T ss_pred             HHhCCCCEEEECCccccCCCCCC--------CCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHh
Confidence            45789999988753  1111111        244588888877654 8999999999 9999999999999999999999


Q ss_pred             hhCCc
Q 023442          146 YQNPW  150 (282)
Q Consensus       146 l~nP~  150 (282)
                      +.++.
T Consensus       196 ~~~~d  200 (221)
T 1yad_A          196 FSSAE  200 (221)
T ss_dssp             HTSSS
T ss_pred             hCCCC
Confidence            88766

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.95  E-value=1.6e-05  Score=77.38  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhhcC-C-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-------ccCCCCcCCcCC
Q 023442           25 PKFVGEAMSVIAANT-N-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-------LLNGISPAENRT   95 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-------~~~G~~~ad~~~   95 (282)
                      +..+.+.++.+++.. + +||.++.-.      +.+.     ++.+.++|++.+.| +...       ...|.      .
T Consensus       267 ~~~~~~~i~~lk~~~~~~~~Vi~G~V~------t~~~-----a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~------g  328 (503)
T 1me8_A          267 SEWQKITIGWIREKYGDKVKVGAGNIV------DGEG-----FRYLADAGADFIKI-GIGGGSICITREQKGI------G  328 (503)
T ss_dssp             SHHHHHHHHHHHHHHGGGSCEEEEEEC------SHHH-----HHHHHHHTCSEEEE-CSSCSTTCCSTTTTCC------C
T ss_pred             ccchhhHHHHHHHhCCCCceEeecccc------CHHH-----HHHHHHhCCCeEEe-cccCCcCcccccccCC------C
Confidence            344555567676665 4 677765432      2221     22356789999998 4311       11111      1


Q ss_pred             CCCccHHHHHHHHhcC--------CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           96 IPPLKYEYYYALLRDF--------PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~--------~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +|  ....+.++.+..        .++|||+.|||.++.|+.+++..|||+||+|+.++.
T Consensus       329 ~p--~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~  386 (503)
T 1me8_A          329 RG--QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFAR  386 (503)
T ss_dssp             CC--HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             Cc--hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence            22  244444443221        169999999999999999999999999999998875

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=97.92  E-value=5.4e-05  Score=70.17  Aligned_cols=105  Identities=9%  Similarity=-0.041  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++..+ +++.+++.|+++|.        +..        ++-+|
T Consensus       171 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------~P~--------~~~~~  229 (359)
T 1mdl_A          171 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDV----PAAIK-RSQALQQEGVTWIE--------EPT--------LQHDY  229 (359)
T ss_dssp             SHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHHHHTCSCEE--------CCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHHHhCCCeEE--------CCC--------ChhhH
Confidence            6788889999999987  68999999988864    34344 35567889999873        111        22247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      +...++.+. .++||++++.+.|+++++++++ ..||+|++-.+-++.++
T Consensus       230 ~~~~~l~~~-~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~  278 (359)
T 1mdl_A          230 EGHQRIQSK-LNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVT  278 (359)
T ss_dssp             HHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHH
T ss_pred             HHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHH
Confidence            777777765 5899999999999999999999 77999999766655544

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=97.79  E-value=0.00026  Score=66.13  Aligned_cols=108  Identities=6%  Similarity=-0.080  Sum_probs=82.0

Q ss_pred             ccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           21 LMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      .+.+++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +..        ++
T Consensus       179 ~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------~P~--------~~  237 (382)
T 1rvk_A          179 WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSR----TDALA-LGRGLEKLGFDWIE--------EPM--------DE  237 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCH----HHHHH-HHHHHHTTTCSEEE--------CCS--------CT
T ss_pred             cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEe--------CCC--------Ch
Confidence            3458999999999999987  68999999888863    34444 35678899999874        111        22


Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCCC-HHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGINT-VDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~s-~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      -+|+...++.+. .++||++.+.+.| +++++++++ ..||.|++--+-.+...
T Consensus       238 ~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  290 (382)
T 1rvk_A          238 QSLSSYKWLSDN-LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGIT  290 (382)
T ss_dssp             TCHHHHHHHHHH-CSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred             hhHHHHHHHHhh-CCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHH
Confidence            247777777765 5899999999999 999999999 67999998655554443

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=97.78  E-value=0.00017  Score=63.19  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=57.5

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+...+-.|...+-+.+ ++. .            .+.+.+.++++...++||+..|||+|++++++++ .|||+|.+|.
T Consensus       145 ~a~~a~~~g~~~VYld~-sG~-~------------~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS  209 (228)
T 3vzx_A          145 YARVSELLQLPIFYLEY-SGV-L------------GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGN  209 (228)
T ss_dssp             HHHHHHHTTCSEEEEEC-TTS-C------------CCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred             HHHHHHHcCCCEEEecC-CCC-c------------CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence            45555556777777666 321 1            1378888887753279999999999999999998 5999999999


Q ss_pred             HhhhCCccc
Q 023442          144 AAYQNPWYT  152 (282)
Q Consensus       144 gal~nP~if  152 (282)
                      ++..||.++
T Consensus       210 a~v~~p~~~  218 (228)
T 3vzx_A          210 AVYEDFDRA  218 (228)
T ss_dssp             HHHHCHHHH
T ss_pred             HHhcCHHHH
Confidence            999999975

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=97.77  E-value=0.00017  Score=67.34  Aligned_cols=103  Identities=9%  Similarity=-0.010  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++..+ +++.+++.|+ +|.        +..        +  +|
T Consensus       171 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i-~iE--------~P~--------~--~~  226 (379)
T 2rdx_A          171 DWQSDIDRIRACLPLLEPGEKAMADANQGWRV----DNAIR-LARATRDLDY-ILE--------QPC--------R--SY  226 (379)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCH----HHHHH-HHHHTTTSCC-EEE--------CCS--------S--SH
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhCCe-EEe--------CCc--------C--CH
Confidence            6788899999999988  58999999988864    34344 4566788898 763        111        1  37


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      +...++.+. .++||++++.++|+++++++++ ..||.|++-.+-++.++-
T Consensus       227 ~~~~~l~~~-~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  276 (379)
T 2rdx_A          227 EECQQVRRV-ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSK  276 (379)
T ss_dssp             HHHHHHHTT-CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHH
T ss_pred             HHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHH
Confidence            777777664 5899999999999999999998 779999998777666654

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=97.77  E-value=3.5e-05  Score=65.83  Aligned_cols=106  Identities=15%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.+.++++.+++. ++++.+-+. +.   .+..+.+    +.+.+.|++.|.++... ....+          +..++.+
T Consensus        90 ~~~~~~~~~~~~~-g~~~~v~~~-~~---~t~~~~~----~~~~~~g~d~i~v~~g~~g~~~~----------~~~~~~i  150 (211)
T 3f4w_A           90 LTIQSCIRAAKEA-GKQVVVDMI-CV---DDLPARV----RLLEEAGADMLAVHTGTDQQAAG----------RKPIDDL  150 (211)
T ss_dssp             HHHHHHHHHHHHH-TCEEEEECT-TC---SSHHHHH----HHHHHHTCCEEEEECCHHHHHTT----------CCSHHHH
T ss_pred             hHHHHHHHHHHHc-CCeEEEEec-CC---CCHHHHH----HHHHHcCCCEEEEcCCCcccccC----------CCCHHHH
Confidence            4456666666654 555554322 11   1222222    23457899999888432 11111          1126777


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .++++..+++||++.|||+ ++++.++++.|||+|.+||+++..+..
T Consensus       151 ~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~  196 (211)
T 3f4w_A          151 ITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADP  196 (211)
T ss_dssp             HHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSH
T ss_pred             HHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCH
Confidence            7777655689999999995 999999999999999999999877663

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=97.76  E-value=4.5e-05  Score=69.43  Aligned_cols=125  Identities=9%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      |+-||. +|+++..+ |..|....+.+..|-.++....+.++.|.-|..-.....+++.++. ++.++++|+|.|.+|+.
T Consensus       113 iEd~~~-~k~cgH~~-gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~r-a~ay~eAGAd~i~~e~~  189 (295)
T 1xg4_A          113 IEDQVG-AKRSGHRP-NKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIER-AQAYVEAGAEMLFPEAI  189 (295)
T ss_dssp             EECBCS-SCCCTTSS-SCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHH-HHHHHHTTCSEEEETTC
T ss_pred             ECCCCC-CcccCCCC-CCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHH-HHHHHHcCCCEEEEeCC
Confidence            456663 45665544 5667766677666655555555678888888631111123455554 46788999999999986


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC--CCHH-HHHHHHHcCCCEEEecHHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI--NTVD-EVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI--~s~e-da~~~l~~g~DgVmIGRgal~  147 (282)
                      +.                 ++.+.++.+.. ++|+++|...  .++. ...++-+.|++.|++|.+++.
T Consensus       190 ~~-----------------~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~  240 (295)
T 1xg4_A          190 TE-----------------LAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFR  240 (295)
T ss_dssp             CS-----------------HHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred             CC-----------------HHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence            31                 56667777664 7999998875  2332 334444589999999988763

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=97.76  E-value=3.5e-05  Score=69.50  Aligned_cols=58  Identities=17%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC--Cccchhhh
Q 023442           98 PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN--PWYTLGHV  156 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n--P~if~~~~  156 (282)
                      +...+.++++++... ++||+..|||+|++|++++++.|||+|.+|.+++.|  |.++ .++
T Consensus       211 ~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv-~e~  271 (286)
T 3vk5_A          211 HVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSAL-AEI  271 (286)
T ss_dssp             CCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHH-HHH
T ss_pred             cCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHH-HHH
Confidence            445677777776532 799999999999999999999999999999999999  6653 443

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=97.71  E-value=0.0002  Score=67.14  Aligned_cols=104  Identities=9%  Similarity=-0.069  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+++++|++++  ++++.|+.+-||+.    .+..+ +++.+++.|+ +|.        +.        ++  +|
T Consensus       171 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i-~iE--------qP--------~~--~~  226 (378)
T 3eez_A          171 DVERDIARIRDVEDIREPGEIVLYDVNRGWTR----QQALR-VMRATEDLHV-MFE--------QP--------GE--TL  226 (378)
T ss_dssp             CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCH----HHHHH-HHHHTGGGTC-CEE--------CC--------SS--SH
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEEECCCCCCH----HHHHH-HHHHhccCCe-EEe--------cC--------CC--CH
Confidence            6778888999999988  68999999999974    23233 4566778887 663        11        11  36


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +...++.+. .++||++++.+.|++|++++++ .+||.|++-.+..+.++-+
T Consensus       227 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~  277 (378)
T 3eez_A          227 DDIAAIRPL-HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRA  277 (378)
T ss_dssp             HHHHHTGGG-CCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHH
T ss_pred             HHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHH
Confidence            766666554 5899999999999999999999 7799999999998888754

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=97.69  E-value=0.00032  Score=63.45  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=80.2

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      +|+.+-.+.+.+.+-+++|++.++-|+ +|+=+--. .-+-+++.. +.+++.++|+|+|-.+.... ..|.+..     
T Consensus       149 ig~lk~g~~~~v~~eI~~V~~a~~~~~-lKVIlEt~-~Lt~eei~~-A~~ia~eaGADfVKTSTGf~-~~GAT~e-----  219 (288)
T 3oa3_A          149 YPWLSEKRYTDVFQDIRAVRLAAKDAI-LKVILETS-QLTADEIIA-GCVLSSLAGADYVKTSTGFN-GPGASIE-----  219 (288)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTTSE-EEEECCGG-GCCHHHHHH-HHHHHHHTTCSEEECCCSSS-SCCCCHH-----
T ss_pred             hhhhcCCcHHHHHHHHHHHHHHhcCCC-ceEEEECC-CCCHHHHHH-HHHHHHHcCCCEEEcCCCCC-CCCCCHH-----
Confidence            466666788999999999999886663 67533111 112344443 56788899999997663210 1121111     


Q ss_pred             CCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442           97 PPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus        97 ~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                         ....+++.++. ..+++|.+.|||+|.+|+.++++.||+  |+..|+.++.
T Consensus       220 ---dv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~g~~I~~  270 (288)
T 3oa3_A          220 ---NVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASAGVKIVN  270 (288)
T ss_dssp             ---HHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESCHHHHHH
T ss_pred             ---HHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhhHHHHHH
Confidence               24556666643 247999999999999999999999999  7777766653

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=97.69  E-value=8.4e-05  Score=63.30  Aligned_cols=76  Identities=16%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|+|.|.+++....  +..  +.  ..+..|+.+.++.+.. ++||++.|||. ++++.++++.|+|+|++|++++.
T Consensus       124 ~~~~g~d~i~~~~~~~~--~~~--~~--~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~  195 (215)
T 1xi3_A          124 AEKKGADYLGAGSVFPT--KTK--ED--ARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMG  195 (215)
T ss_dssp             HHHHTCSEEEEECSSCC--------C--CCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHT
T ss_pred             HHhcCCCEEEEcCCccC--CCC--CC--CCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhC
Confidence            34679999998763211  100  00  1234588888877654 89999999998 99999998899999999999988


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .|+.
T Consensus       196 ~~d~  199 (215)
T 1xi3_A          196 AEDV  199 (215)
T ss_dssp             SSSH
T ss_pred             CCCH
Confidence            7753

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=97.68  E-value=0.00029  Score=66.22  Aligned_cols=103  Identities=9%  Similarity=0.076  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+++++|++++  ++++.|+..-||+.    ++..+ +++.+++.|+++|.        +..        ++-++
T Consensus       177 ~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~----~~A~~-~~~~l~~~~i~~iE--------qP~--------~~~d~  235 (389)
T 3ozy_A          177 APRKDAANLRAMRQRVGADVEILVDANQSLGR----HDALA-MLRILDEAGCYWFE--------EPL--------SIDDI  235 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH----HHHHH-HHHHHHHTTCSEEE--------SCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEEECCCCcCH----HHHHH-HHHHHHhcCCCEEE--------CCC--------CcccH
Confidence            6888889999999987  68999999989974    23333 45678899999884        111        22247


Q ss_pred             HHHHHHH-hcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhC
Q 023442          102 EYYYALL-RDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQN  148 (282)
Q Consensus       102 ~~i~~l~-~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~n  148 (282)
                      +...++. + ..++||++++.+.|++|++++++ ..||.|++--+-.+.
T Consensus       236 ~~~~~l~~~-~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GG  283 (389)
T 3ozy_A          236 EGHRILRAQ-GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGG  283 (389)
T ss_dssp             HHHHHHHTT-CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSC
T ss_pred             HHHHHHHhc-CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCC
Confidence            7777776 5 46899999999999999999998 779999886544444

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=97.68  E-value=4.1e-05  Score=68.17  Aligned_cols=50  Identities=18%  Similarity=0.094  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcCC----CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFP----DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~----~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++...++++..+    ++|+|+.|||.|++|+.++.+ |+|||.||++++..++.
T Consensus       192 l~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~  245 (254)
T 1vc4_A          192 LETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDL  245 (254)
T ss_dssp             TTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCH
T ss_pred             HHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCH
Confidence            455555554433    689999999999999999999 99999999999999886

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=97.63  E-value=0.00026  Score=66.13  Aligned_cols=103  Identities=10%  Similarity=0.019  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++..+ +++.++ .|+ +|.        +.        ++  +|
T Consensus       172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~-~~i-~iE--------qP--------~~--d~  226 (378)
T 2qdd_A          172 DPAQDIARIEAISAGLPDGHRVTFDVNRAWTP----AIAVE-VLNSVR-ARD-WIE--------QP--------CQ--TL  226 (378)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCEEEEECTTCCCH----HHHHH-HHTSCC-CCC-EEE--------CC--------SS--SH
T ss_pred             ChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCH----HHHHH-HHHHhC-CCc-EEE--------cC--------CC--CH
Confidence            5788889999999987  68999999888863    33333 334455 676 552        11        11  47


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      +...++.+. .++||++++.+.|+++++++++ ..||.|++-.+.++.++-+
T Consensus       227 ~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~  277 (378)
T 2qdd_A          227 DQCAHVARR-VANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRA  277 (378)
T ss_dssp             HHHHHHHTT-CCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHH
T ss_pred             HHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHH
Confidence            777777664 5899999999999999999998 7899999998888887753

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=97.63  E-value=0.00049  Score=63.93  Aligned_cols=105  Identities=10%  Similarity=0.054  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +..        ++-+|
T Consensus       170 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~~~~  228 (370)
T 1nu5_A          170 TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDE----QTASI-WIPRLEEAGVELVE--------QPV--------PRANF  228 (370)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCH----HHHHH-HHHHHHHHTCCEEE--------CCS--------CTTCH
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCcceEe--------CCC--------CcccH
Confidence            4677788999999877  58899999888864    34344 35677889999874        111        22247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      +...++.+. .++||++++.++|+++++++++ ..||.|++--+-.+.++
T Consensus       229 ~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  277 (370)
T 1nu5_A          229 GALRRLTEQ-NGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIA  277 (370)
T ss_dssp             HHHHHHHHH-CSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred             HHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHH
Confidence            777777765 5899999999999999999999 67999999766666554

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=97.61  E-value=0.0011  Score=59.06  Aligned_cols=109  Identities=15%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhcC---CccEEEEecC-CCCCC--CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           25 PKFVGEAMSVIAANT---NVPVSVKCRI-GVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        25 p~~~~eiv~~v~~~~---~ipvsvKiR~-G~d~~--~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      .+.+.+-++++++.+   ++||.+=..+ |.+-.  .+.+++ ...++++.++|+|.|-+.. +    +           
T Consensus       120 ~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i-~~a~~~a~~~GAD~vkt~~-~----~-----------  182 (263)
T 1w8s_A          120 EWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIV-AYAARIALELGADAMKIKY-T----G-----------  182 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHH-HHHHHHHHHHTCSEEEEEC-C----S-----------
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHH-HHHHHHHHHcCCCEEEEcC-C----C-----------
Confidence            444555555555433   7887665443 11110  022333 3345677889999987772 1    1           


Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCC--CHHHHHHHH----HcCCCEEEecHHhhhCCcc
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGIN--TVDEVNAAL----RKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~--s~eda~~~l----~~g~DgVmIGRgal~nP~i  151 (282)
                       ..+.++++++..+.+||++.|||.  |.+++.+++    +.|++|+.+||.++..|..
T Consensus       183 -~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp  240 (263)
T 1w8s_A          183 -DPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDA  240 (263)
T ss_dssp             -SHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTH
T ss_pred             -CHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCH
Confidence             145666666554334999999999  999999888    5899999999999988875

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=97.59  E-value=8.9e-05  Score=65.48  Aligned_cols=81  Identities=16%  Similarity=0.276  Sum_probs=63.0

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+.+.|++.+++--=+....|.         +.+++.+.+++++ ..+|+...|||+|.+|++++++.|||-|.+|..
T Consensus        37 a~~~~~~gad~lhvvDld~a~~~~---------~~~~~~i~~i~~~-~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~  106 (243)
T 4gj1_A           37 FKEYEKAGAKELHLVDLTGAKDPS---------KRQFALIEKLAKE-VSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM  106 (243)
T ss_dssp             HHHHHHHTCCEEEEEEHHHHHCGG---------GCCHHHHHHHHHH-CCSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred             HHHHHHCCCCEEEEEecCcccccc---------hhHHHHHHHHHHh-cCCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence            456788999999885211111121         1237788888776 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.||.++ .++
T Consensus       107 a~~~p~li-~e~  117 (243)
T 4gj1_A          107 AIKDATLC-LEI  117 (243)
T ss_dssp             TTTCHHHH-HHH
T ss_pred             cccCCchH-HHH
Confidence            99999975 443

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=97.58  E-value=0.00043  Score=61.28  Aligned_cols=46  Identities=17%  Similarity=0.226  Sum_probs=39.2

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+.++.+. .++||++.|||.|++++.++++.|||+|.+|.++..
T Consensus       190 ~~~i~~v~~~-~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~  235 (262)
T 1rd5_A          190 ESLIQEVKKV-TNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR  235 (262)
T ss_dssp             HHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHhh-cCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            4566666654 589999999999999999999999999999988753

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=97.58  E-value=0.00027  Score=66.25  Aligned_cols=104  Identities=5%  Similarity=-0.071  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++. .+++++|++++  ++++.++.+-||+.    ++..+ +++.+++.|+++|.        +..        ++-+|
T Consensus       191 ~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~~d~  248 (388)
T 2nql_A          191 DDGP-AAEIANLRQVLGPQAKIAADMHWNQTP----ERALE-LIAEMQPFDPWFAE--------APV--------WTEDI  248 (388)
T ss_dssp             TTCH-HHHHHHHHHHHCTTSEEEEECCSCSCH----HHHHH-HHHHHGGGCCSCEE--------CCS--------CTTCH
T ss_pred             ChHH-HHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHhhcCCCEEE--------CCC--------ChhhH
Confidence            5677 89999999987  68999999888864    34444 35568899999873        111        22247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      +...++.+. .++||++++.+.|+++++++++ ..||+|++-.+- +.++-
T Consensus       249 ~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~  297 (388)
T 2nql_A          249 AGLEKVSKN-TDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITN  297 (388)
T ss_dssp             HHHHHHHTS-CCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHH
T ss_pred             HHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHH
Confidence            777777664 5899999999999999999998 679999998877 77664

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=97.57  E-value=0.00043  Score=64.33  Aligned_cols=106  Identities=8%  Similarity=0.112  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHH-HHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLC-DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~-~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++.. ++ ++.+++.|+++|.        +.        +++-+
T Consensus       167 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~~~-~~~l~~~~i~~iE--------qP--------~~~~d  225 (369)
T 2p8b_A          167 NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKN----SANTLTA-LRSLGHLNIDWIE--------QP--------VIADD  225 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBS----HHHHHHH-HHTSTTSCCSCEE--------CC--------BCTTC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHHHH-HHHHHhCCCcEEE--------CC--------CCccc
Confidence            6788889999999987  68999999888864    2333 33 4567888888774        11        12224


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      |+...++.+. .++||++++.++|+++++++++ ..||+|++-.+-++.++-
T Consensus       226 ~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~  276 (369)
T 2p8b_A          226 IDAMAHIRSK-TDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYP  276 (369)
T ss_dssp             HHHHHHHHHT-CCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred             HHHHHHHHHh-CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHH
Confidence            7777777765 5899999999999999999998 789999998887777654

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=97.57  E-value=0.00021  Score=67.11  Aligned_cols=103  Identities=6%  Similarity=-0.003  Sum_probs=78.5

Q ss_pred             ccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      ||+...++++...+++++|++++  ++++.++..-+|+.    ++..++ ++.+++.|+++|.        +.       
T Consensus       174 ~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~----~~a~~~-~~~l~~~~i~~iE--------~P-------  233 (392)
T 2poz_A          174 RRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTT----DETIRF-CRKIGELDICFVE--------EP-------  233 (392)
T ss_dssp             TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHHH-HHHHGGGCEEEEE--------CC-------
T ss_pred             cCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHHH-HHHHHhcCCCEEE--------CC-------
Confidence            55556678899999999999987  68999998877853    344443 5568888888764        11       


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                       +++-+|+...++.+. .++||++.+.+.|+++++++++ ..||.|++
T Consensus       234 -~~~~~~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  279 (392)
T 2poz_A          234 -CDPFDNGALKVISEQ-IPLPIAVGERVYTRFGFRKIFELQACGIIQP  279 (392)
T ss_dssp             -SCTTCHHHHHHHHHH-CSSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred             -CCcccHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence             122247777777765 5899999999999999999998 66998876

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=97.55  E-value=0.0002  Score=63.38  Aligned_cols=77  Identities=16%  Similarity=0.060  Sum_probs=55.6

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.|+|+|.+.+-.....    ...  .++..++.+.++++.. .++||++-||| |++++.++++.|+|||.+|++++
T Consensus       151 A~~~GaDyI~vgpvf~T~t----K~~--~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~  223 (243)
T 3o63_A          151 AAAGDADYFCVGPCWPTPT----KPG--RAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAIT  223 (243)
T ss_dssp             HHHSSCSEEEECCSSCCCC-----------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHH
T ss_pred             HhhCCCCEEEEcCccCCCC----CCC--cchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHh
Confidence            3468999999865321100    000  1244588888877642 48999999999 99999999999999999999998


Q ss_pred             hCCcc
Q 023442          147 QNPWY  151 (282)
Q Consensus       147 ~nP~i  151 (282)
                      ..+..
T Consensus       224 ~a~dp  228 (243)
T 3o63_A          224 SADDP  228 (243)
T ss_dssp             TCSSH
T ss_pred             CCCCH
Confidence            87764

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=97.55  E-value=0.00021  Score=61.47  Aligned_cols=73  Identities=16%  Similarity=0.077  Sum_probs=53.1

Q ss_pred             HHhCCCCEEEEec----CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           68 SSLSPTRHFIIHS----RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        68 le~~Gv~~i~VH~----Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +.+.|+|.+.+..    .+.  .|       ...+..|+.+.++++...++||++.|||. ++++.++++.|+|+|.+|+
T Consensus       132 a~~~g~d~v~~~~v~~t~~~--~~-------~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs  201 (227)
T 2tps_A          132 AEEDGADYVGLGPIYPTETK--KD-------TRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMIS  201 (227)
T ss_dssp             HHHHTCSEEEECCSSCCCSS--SS-------CCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESH
T ss_pred             HHhCCCCEEEECCCcCCCCC--CC-------CCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhH
Confidence            3467899988632    111  11       01234588888877653239999999998 9999999889999999999


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      +++..++
T Consensus       202 ~i~~~~d  208 (227)
T 2tps_A          202 AISQAED  208 (227)
T ss_dssp             HHHTSSC
T ss_pred             HhhcCCC
Confidence            9987654

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=97.51  E-value=0.00065  Score=63.95  Aligned_cols=107  Identities=4%  Similarity=-0.109  Sum_probs=82.5

Q ss_pred             CH-HHHHHHHHHHhhcC--CccEEEEecCCC--CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           24 DP-KFVGEAMSVIAANT--NVPVSVKCRIGV--DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        24 ~p-~~~~eiv~~v~~~~--~ipvsvKiR~G~--d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      ++ +...+++++|++++  ++++.++.+-||  +.    ++..+ +++.+++.|+++|.        +..        ++
T Consensus       174 ~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~  232 (401)
T 2hzg_A          174 GTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDV----EAAAA-RLPTLDAAGVLWLE--------EPF--------DA  232 (401)
T ss_dssp             SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCH----HHHHT-THHHHHHTTCSEEE--------CCS--------CT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CCC--------Cc
Confidence            44 77889999999987  689999999888  53    23333 34567899999873        111        12


Q ss_pred             ccHHHHHHHHh-cCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442           99 LKYEYYYALLR-DFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        99 ~~~~~i~~l~~-~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      -+|+...++.+ . .++||++++.+.|+++++++++ ..||.|++-.+.++.++-+
T Consensus       233 ~d~~~~~~l~~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~  287 (401)
T 2hzg_A          233 GALAAHAALAGRG-ARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPA  287 (401)
T ss_dssp             TCHHHHHHHHTTC-CSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHH
T ss_pred             cCHHHHHHHHhhC-CCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHH
Confidence            24777777765 4 5899999999999999999998 7899999998888887653

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=97.50  E-value=0.00025  Score=63.31  Aligned_cols=49  Identities=14%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++.+..+.+ ..++||++-|||.|++|+.++++.|||||.+|++++..+.
T Consensus       167 ~~~l~~i~~-~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~d  215 (264)
T 1xm3_A          167 PLNLSFIIE-QAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADD  215 (264)
T ss_dssp             HHHHHHHHH-HCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSS
T ss_pred             HHHHHHHHh-cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCC
Confidence            566666665 4689999999999999999999999999999999875544

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=97.49  E-value=0.00037  Score=65.74  Aligned_cols=104  Identities=11%  Similarity=0.034  Sum_probs=78.4

Q ss_pred             ccccccc-CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           16 CFGVSLM-LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        16 ~yGs~Ll-~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      .||+... ++++...+++++|++++  ++++.++..-||+.    ++.++ +++.+++.|+++|.        +.     
T Consensus       191 ~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~----~~ai~-~~~~l~~~~i~~iE--------~P-----  252 (410)
T 2gl5_A          191 NYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGT----NSAIQ-FAKAIEKYRIFLYE--------EP-----  252 (410)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHGGGCEEEEE--------CS-----
T ss_pred             cccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCCCeEE--------CC-----
Confidence            3676654 57888999999999987  68999998877753    34444 34668888888764        11     


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                         +++-+|+...++.+. .++||++.+.+.|+++++++++ ..||.|++
T Consensus       253 ---~~~~~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  298 (410)
T 2gl5_A          253 ---IHPLNSDNMQKVSRS-TTIPIATGERSYTRWGYRELLEKQSIAVAQP  298 (410)
T ss_dssp             ---SCSSCHHHHHHHHHH-CSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred             ---CChhhHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence               122247777777765 5899999999999999999998 66998876

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=97.49  E-value=0.00057  Score=60.01  Aligned_cols=119  Identities=18%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCC-CCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d-~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      +|+.+-.+.+.+.+-+.+|++.++ ...+|+=+  +.- +..+-+++. .+.+++.++|+|+|-.+.......|-+..  
T Consensus       103 ig~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~-~a~~ia~~aGADfVKTSTGf~~~~gAt~e--  178 (231)
T 3ndo_A          103 VGAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLA-DVCRVARDAGADFVKTSTGFHPSGGASVQ--  178 (231)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHH-HHHHHHHHTTCSEEECCCSCCTTCSCCHH--
T ss_pred             hHhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHH-HHHHHHHHHCcCEEEcCCCCCCCCCCCHH--
Confidence            576666789999999999999884 23446532  211 001223433 35678889999999665321101221110  


Q ss_pred             CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442           94 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                            ....+++...  .+++|-++|||+|.+|+.++++.||+  |+..|+.++.
T Consensus       179 ------dv~lm~~~v~--~~v~VKaaGGIrt~~~a~~~i~aGa~RiGtS~g~~I~~  226 (231)
T 3ndo_A          179 ------AVEIMARTVG--ERLGVKASGGIRTAEQAAAMLDAGATRLGLSGSRAVLD  226 (231)
T ss_dssp             ------HHHHHHHHHT--TTSEEEEESSCCSHHHHHHHHHTTCSEEEESSHHHHHH
T ss_pred             ------HHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHhcchhcccchHHHHHh
Confidence                  1233444443  47999999999999999999999999  8887777654

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=97.48  E-value=0.0005  Score=65.62  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=80.2

Q ss_pred             cCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      ..+++...+++++||+++  ++++.++..-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-
T Consensus       183 ~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~----~~A~~-~~~~Le~~~i~~iE--------eP--------~~~~  241 (433)
T 3rcy_A          183 MTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTT----AGAIR-LGQAIEPYSPLWYE--------EP--------VPPD  241 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCH----HHHHH-HHHHHGGGCCSEEE--------CC--------SCTT
T ss_pred             hhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCH----HHHHH-HHHHhhhcCCCEEE--------CC--------CChh
Confidence            346788889999999987  68899988877864    33333 45678899998884        11        1222


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      +++...++.+. .++||++.+.+.|++|++++++ ..||.|++--+-.+...
T Consensus       242 ~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit  292 (433)
T 3rcy_A          242 NVGAMAQVARA-VRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIW  292 (433)
T ss_dssp             CHHHHHHHHHH-SSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHH
T ss_pred             hHHHHHHHHhc-cCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHH
Confidence            47777777765 5899999999999999999999 67999988766555443

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=97.46  E-value=0.00018  Score=63.61  Aligned_cols=56  Identities=20%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc-cchhhhH
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW-YTLGHVD  157 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~-if~~~~~  157 (282)
                      ..+.+.++++...++||+..|||+|+++++++++ |||+|.+|.++..+|. ++ ++++
T Consensus       169 ~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~~~~~~-~~v~  225 (240)
T 1viz_A          169 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRAL-KTVA  225 (240)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHHHHH-THHH
T ss_pred             hHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhCHHHHH-HHHH
Confidence            4778888876532899999999999999999999 9999999999999998 53 5443

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=97.44  E-value=0.00087  Score=62.90  Aligned_cols=104  Identities=6%  Similarity=-0.045  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +.        +++-+|+
T Consensus       177 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP--------~~~~d~~  235 (391)
T 2qgy_A          177 LSISIQFVEKVREIVGDELPLMLDLAVPEDL----DQTKS-FLKEVSSFNPYWIE--------EP--------VDGENIS  235 (391)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECCCCSCH----HHHHH-HHHHHGGGCCSEEE--------CS--------SCTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCH----HHHHH-HHHHHHhcCCCeEe--------CC--------CChhhHH
Confidence            688899999999987  68999999888863    34444 35668899999874        11        1222477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      ...++.+. .++||++++.+.|+++++++++ ..||.|++-.+-++.++
T Consensus       236 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  283 (391)
T 2qgy_A          236 LLTEIKNT-FNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLI  283 (391)
T ss_dssp             HHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHH
T ss_pred             HHHHHHhh-CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHH
Confidence            77777765 5899999999999999999998 67999998765555554

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=97.38  E-value=0.0015  Score=58.26  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      +|+.+-.+.+.+.+-+.+|+++++ ...+|+=+  +.-   +-+++. .+.+++.++|+|+|-.+.... ..|.+..   
T Consensus       134 ig~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L---t~eei~-~A~~ia~eaGADfVKTSTGf~-~~GAT~e---  204 (260)
T 3r12_A          134 VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYL---DTEEKI-AACVISKLAGAHFVKTSTGFG-TGGATAE---  204 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGC---CHHHHH-HHHHHHHHTTCSEEECCCSSS-SCCCCHH---
T ss_pred             hhhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCCCC---CHHHHH-HHHHHHHHhCcCEEEcCCCCC-CCCCCHH---
Confidence            566666789999999999998874 23346432  221   223443 356788899999997763211 1121110   


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                           ....+++...  ..++|-++|||+|.+|+.++++.||+  |+..|+.++.
T Consensus       205 -----dV~lm~~~vg--~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~g~~I~~  252 (260)
T 3r12_A          205 -----DVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGVKIVQ  252 (260)
T ss_dssp             -----HHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEESCHHHHHH
T ss_pred             -----HHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHcCCceeecchHHHHHH
Confidence                 1233344443  47999999999999999999999999  7777777654

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=97.36  E-value=0.00055  Score=61.06  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             HHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+..+++..++ +|||.-|||.|++|+..+++.|||||++|.++..
T Consensus       165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~  212 (268)
T 2htm_A          165 RALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAE  212 (268)
T ss_dssp             HHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence            4556666652467 9999999999999999999999999999998864

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=97.33  E-value=0.00025  Score=62.44  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ..+.+.++++...++||+..|||+|+++++++++ |||+|.+|.++..+|.-+
T Consensus       177 ~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~~~~~  228 (234)
T 2f6u_A          177 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA  228 (234)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHHCHHH
T ss_pred             hHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhCHHHH
Confidence            4778888877533899999999999999999999 999999999999998654

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=97.28  E-value=0.0029  Score=59.23  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+++++|++++  ++++.|+..-||+.    .+..+ +++.+++.|+++|.        +..        ++-++
T Consensus       176 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~----~~A~~-~~~~l~~~~i~~iE--------qP~--------~~~d~  234 (383)
T 3i4k_A          176 DPAEDTRRVAELAREVGDRVSLRIDINARWDR----RTALH-YLPILAEAGVELFE--------QPT--------PADDL  234 (383)
T ss_dssp             CHHHHHHHHHHHHHTTTTTSEEEEECTTCSCH----HHHHH-HHHHHHHTTCCEEE--------SCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CCC--------ChhhH
Confidence            6777788899999987  58899999888864    23333 45677889999885        111        22236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~  147 (282)
                      +...++.+. .++||.+++.+.|++|+.++++ ..||.|++--+-.+
T Consensus       235 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G  280 (383)
T 3i4k_A          235 ETLREITRR-TNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHG  280 (383)
T ss_dssp             HHHHHHHHH-HCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTT
T ss_pred             HHHHHHHhh-CCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccC
Confidence            667777665 4799999999999999999998 67999988644433

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=97.27  E-value=0.0012  Score=58.14  Aligned_cols=115  Identities=14%  Similarity=0.122  Sum_probs=74.6

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      +|+.+..+.+.+.+-+++|++.++- ..+|+=+  |.-   +-+++. .+.+++.++|+|+|-.+.... ..|.+..   
T Consensus       118 ig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~L---t~eei~-~a~~ia~~aGADfVKTSTGf~-~ggAt~~---  188 (239)
T 3ngj_A          118 IGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYL---TNEEKV-EVCKRCVAAGAEYVKTSTGFG-THGATPE---  188 (239)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGS---CHHHHH-HHHHHHHHHTCSEEECCCSSS-SCCCCHH---
T ss_pred             hHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCC---CHHHHH-HHHHHHHHHCcCEEECCCCCC-CCCCCHH---
Confidence            4655567888899889999888752 2455422  221   223433 356777899999997763211 0122111   


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                           ..+.+++...  .+++|-++|||+|.+|+.++++.||+  |+..|+.++.
T Consensus       189 -----dv~lmr~~vg--~~v~VKasGGIrt~~da~~~i~aGA~riGtS~~~~I~~  236 (239)
T 3ngj_A          189 -----DVKLMKDTVG--DKALVKAAGGIRTFDDAMKMINNGASRIGASAGIAILN  236 (239)
T ss_dssp             -----HHHHHHHHHG--GGSEEEEESSCCSHHHHHHHHHTTEEEEEESCHHHHHH
T ss_pred             -----HHHHHHHhhC--CCceEEEeCCCCCHHHHHHHHHhcccceecccHHHHHh
Confidence                 1233444443  47999999999999999999999999  6666666554

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=97.26  E-value=0.0014  Score=61.72  Aligned_cols=102  Identities=10%  Similarity=0.044  Sum_probs=76.0

Q ss_pred             ccccc--CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           18 GVSLM--LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        18 Gs~Ll--~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      |+++.  ++++...+++++|++++  ++++.++..-+|+.    ++..++ ++.+++.|+++|.-        .      
T Consensus       184 ~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~----~~a~~~-~~~l~~~~i~~iEe--------P------  244 (410)
T 2qq6_A          184 WNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI----PSSIRF-ARAMEPFGLLWLEE--------P------  244 (410)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH----HHHHHH-HHHHGGGCCSEEEC--------C------
T ss_pred             CccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHHH-HHHHhhcCCCeEEC--------C------
Confidence            44444  47788899999999987  58899988777753    344443 56688999998751        1      


Q ss_pred             CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           94 RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                        +++-+|+...++.+. .++||++.+.+.|+++++++++ ..||.|++
T Consensus       245 --~~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  290 (410)
T 2qq6_A          245 --TPPENLDALAEVRRS-TSTPICAGENVYTRFDFRELFAKRAVDYVMP  290 (410)
T ss_dssp             --SCTTCHHHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             --CChhhHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence              122237777777664 5899999999999999999998 66998876

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=97.26  E-value=0.00036  Score=61.42  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      ..+.+.++++...++||+..|||.|+++++++.+ |||+|.+|.++..||..+
T Consensus       173 ~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~~~~~  224 (235)
T 3w01_A          173 DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKDIKKA  224 (235)
T ss_dssp             CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHHCHHHH
T ss_pred             CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceecCHHHH
Confidence            4777877766433899999999999999999888 999999999999999875

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=97.26  E-value=0.0017  Score=60.91  Aligned_cols=97  Identities=13%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +.        +++-+|
T Consensus       189 ~~~~~~e~v~avR~avg~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------~P--------~~~~~~  247 (393)
T 2og9_A          189 DGALDIARVTAVRKHLGDAVPLMVDANQQWDR----PTAQR-MCRIFEPFNLVWIE--------EP--------LDAYDH  247 (393)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCH----HHHHH-HHHHHGGGCCSCEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhhCCCEEE--------CC--------CCcccH
Confidence            5788889999999986  68999998878853    34444 34668889999874        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||++.+.+.|+++++++++ ..||.|++-
T Consensus       248 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  288 (393)
T 2og9_A          248 EGHAALALQ-FDTPIATGEMLTSAAEHGDLIRHRAADYLMPD  288 (393)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence            777777765 5899999999999999999998 669988774

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=97.24  E-value=0.0025  Score=59.02  Aligned_cols=105  Identities=8%  Similarity=-0.043  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHh--CCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~--~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +++...+++++|++++  ++++.++.+-||+.    ++..+ +++.+++  .|+++|.        +..        ++-
T Consensus       167 ~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~~~i~~iE--------qP~--------~~~  225 (366)
T 1tkk_A          167 DIATDIARIQEIRKRVGSAVKLRLDANQGWRP----KEAVT-AIRKMEDAGLGIELVE--------QPV--------HKD  225 (366)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHHHTTCCEEEEE--------CCS--------CTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHHhhcCCCceEEE--------CCC--------Ccc
Confidence            6788889999999887  68999999888854    33334 3556788  7877773        111        222


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      +|+...++.+. .++||++++.++|++++.++++ ..||.|++--.-.+.+.
T Consensus       226 d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  276 (366)
T 1tkk_A          226 DLAGLKKVTDA-TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGIS  276 (366)
T ss_dssp             CHHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred             cHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHH
Confidence            47777777765 4899999999999999999998 78999999765555544

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=97.21  E-value=0.0032  Score=55.91  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhC-CCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~-Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +.+.+.++++..++ .+..+.|-+.       +.+|+    . .+.+. |++.|-++.|.-  .+..         ++++
T Consensus       135 ~~~~l~~l~~~a~~-lGl~~lvEv~-------~~eE~----~-~A~~l~g~~iIGinnr~l--~t~~---------~d~~  190 (251)
T 1i4n_A          135 TAEQIKEIYEAAEE-LGMDSLVEVH-------SREDL----E-KVFSVIRPKIIGINTRDL--DTFE---------IKKN  190 (251)
T ss_dssp             CHHHHHHHHHHHHT-TTCEEEEEEC-------SHHHH----H-HHHTTCCCSEEEEECBCT--TTCC---------BCTT
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHH----H-HHHhcCCCCEEEEeCccc--ccCC---------CCHH
Confidence            34667777777665 4777777553       33443    2 23478 999999999852  2221         1244


Q ss_pred             HHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          103 YYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       103 ~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ...++++..+ ++++|+-|||.|++|+.++.+. +|+|.||.+++..+..
T Consensus       191 ~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~  239 (251)
T 1i4n_A          191 VLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENP  239 (251)
T ss_dssp             HHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSH
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCH
Confidence            4556666554 5899999999999999999999 9999999999998876

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=97.18  E-value=0.0024  Score=55.55  Aligned_cols=115  Identities=13%  Similarity=0.109  Sum_probs=75.1

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      +|+..-.+.+.+.+-+.++++.++-+ .+|+=+  +.-   +-+++ ....+++.++|+|+|-.+.... ..|.+..   
T Consensus        94 ig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l---~~e~i-~~a~~ia~eaGADfVKTsTGf~-~~gat~~---  164 (220)
T 1ub3_A           94 LGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYF---SPEEI-ARLAEAAIRGGADFLKTSTGFG-PRGASLE---  164 (220)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGS---CHHHH-HHHHHHHHHHTCSEEECCCSSS-SCCCCHH---
T ss_pred             chhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCC---CHHHH-HHHHHHHHHhCCCEEEeCCCCC-CCCCCHH---
Confidence            46555568888888889998887533 566322  221   22343 3467788899999996653210 0121110   


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                           ..+.+.+..  ...+||-+.|||.|.+|+.++++.|++  |+..||.++.
T Consensus       165 -----dv~~m~~~v--g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          165 -----DVALLVRVA--QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA  212 (220)
T ss_dssp             -----HHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred             -----HHHHHHHhh--CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence                 133344443  247999999999999999999999999  8888887653

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=97.17  E-value=0.0016  Score=61.53  Aligned_cols=97  Identities=14%  Similarity=0.027  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++||+++  ++++.++..-||+.    ++..+ +++.+++.|+++|.-        ..        ++-++
T Consensus       190 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~----~~A~~-~~~~l~~~~i~~iEe--------P~--------~~~~~  248 (404)
T 4e5t_A          190 DLERSEAFCKQIRAAVGTKADLLFGTHGQFTV----SGAKR-LARRLEAYDPLWFEE--------PI--------PPEKP  248 (404)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSEEEECCCSCBCH----HHHHH-HHHHHGGGCCSEEEC--------CS--------CTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCH----HHHHH-HHHHHhhcCCcEEEC--------CC--------CcccH
Confidence            4677788999999987  68999998888864    33333 456788999998851        11        12236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||.+.+.+.|+++++++++ ..||.|++-
T Consensus       249 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d  289 (404)
T 4e5t_A          249 EDMAEVARY-TSIPVATGERLCTKYEFSRVLETGAASILQMN  289 (404)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCHHHHHHHHHHHTCCSEECCC
T ss_pred             HHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEecC
Confidence            767777665 5899999999999999999998 679988664

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=97.16  E-value=0.0013  Score=58.95  Aligned_cols=44  Identities=25%  Similarity=0.277  Sum_probs=37.5

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.++++ ..++||+..|||.|++++.+.+..|||||.+|.++.
T Consensus       198 ~~v~~vr~-~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv  241 (271)
T 3nav_A          198 ALLERLQQ-FDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVV  241 (271)
T ss_dssp             HHHHHHHH-TTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             HHHHHHHH-hcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence            45566654 458999999999999999988888999999998885

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.13  E-value=0.00043  Score=58.72  Aligned_cols=65  Identities=22%  Similarity=0.309  Sum_probs=50.6

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.|++.+.+|+...               ...+.++++.+..+++||++.|||+ .+++.++++.|+|+|.+|++++. 
T Consensus       121 ~~~Gad~vk~~~~~~---------------~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-  183 (205)
T 1wa3_A          121 MKLGHTILKLFPGEV---------------VGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-  183 (205)
T ss_dssp             HHTTCCEEEETTHHH---------------HHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-
T ss_pred             HHcCCCEEEEcCccc---------------cCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC-
Confidence            468888887775321               1145666776655589999999995 89999999999999999999987 


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      +.
T Consensus       184 ~d  185 (205)
T 1wa3_A          184 GT  185 (205)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=97.12  E-value=0.0043  Score=58.34  Aligned_cols=99  Identities=8%  Similarity=-0.016  Sum_probs=74.8

Q ss_pred             cCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      ..+++.-.+++++|++++  ++++.|+..-+|+.    .+..+ +++.+++.|+++|.        +.        +++-
T Consensus       171 ~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iE--------qP--------~~~~  229 (393)
T 4dwd_A          171 DVDIPGDIAKARAVRELLGPDAVIGFDANNGYSV----GGAIR-VGRALEDLGYSWFE--------EP--------VQHY  229 (393)
T ss_dssp             SCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCH----HHHHH-HHHHHHHTTCSEEE--------CC--------SCTT
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHHHhhCCCEEE--------CC--------CCcc
Confidence            347888889999999986  68999999888864    23333 45678899999885        11        1222


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +++...++.+. .++||.+.+.+.+++|++++++.|||.|++-
T Consensus       230 d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k  271 (393)
T 4dwd_A          230 HVGAMGEVAQR-LDITVSAGEQTYTLQALKDLILSGVRMVQPD  271 (393)
T ss_dssp             CHHHHHHHHHH-CSSEEEBCTTCCSHHHHHHHHHHTCCEECCC
T ss_pred             cHHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCEEEeC
Confidence            36777777665 5899999999999999999998339998764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.11  E-value=0.0027  Score=61.93  Aligned_cols=70  Identities=20%  Similarity=0.228  Sum_probs=49.7

Q ss_pred             HHHhCCCCEEEEec------CCcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           67 VSSLSPTRHFIIHS------RKALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        67 ~le~~Gv~~i~VH~------Rt~~~~G~~~ad~~~i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                      .|.++|+|.+-|=-      -|+...|..-      |.  ...+.++   +++ ..+|||+-|||.+.-|+.+++..|||
T Consensus       338 ~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~------PQ--~tAi~~~a~~a~~-~~vpvIADGGI~~sGDi~KAlaaGAd  408 (556)
T 4af0_A          338 QLIAAGADGLRIGMGSGSICITQEVMAVGR------PQ--GTAVYAVAEFASR-FGIPCIADGGIGNIGHIAKALALGAS  408 (556)
T ss_dssp             HHHHHTCSEEEECSSCSTTBCCTTTCCSCC------CH--HHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             HHHHcCCCEEeecCCCCcccccccccCCCC------cH--HHHHHHHHHHHHH-cCCCEEecCCcCcchHHHHHhhcCCC
Confidence            34578999998841      2334445421      21  3444333   344 37999999999999999999999999


Q ss_pred             EEEecHHh
Q 023442          138 HVMVGRAA  145 (282)
Q Consensus       138 gVmIGRga  145 (282)
                      +||+|.-+
T Consensus       409 ~VMlGsll  416 (556)
T 4af0_A          409 AVMMGGLL  416 (556)
T ss_dssp             EEEESTTT
T ss_pred             EEEEchhh
Confidence            99999644

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=97.09  E-value=0.00048  Score=58.81  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=49.4

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+|.|.++...               +..++.+.++.+..+ ++||++.|||. .+++.++++.|+|+|.+|++++.
T Consensus       118 ~~~G~d~v~v~~t~---------------~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~  181 (212)
T 2v82_A          118 LEAGAQALKIFPSS---------------AFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYR  181 (212)
T ss_dssp             HHTTCSEEEETTHH---------------HHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCC
T ss_pred             HHCCCCEEEEecCC---------------CCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence            46788888774310               112677777776544 59999999996 99999999999999999999876


Q ss_pred             C
Q 023442          148 N  148 (282)
Q Consensus       148 n  148 (282)
                      .
T Consensus       182 ~  182 (212)
T 2v82_A          182 A  182 (212)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=97.08  E-value=0.0041  Score=58.29  Aligned_cols=99  Identities=8%  Similarity=0.014  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +.        +++-+|
T Consensus       171 ~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP--------~~~~~~  229 (397)
T 2qde_A          171 PLKADIAMVAEVRRAVGDDVDLFIDINGAWTY----DQALT-TIRALEKYNLSKIE--------QP--------LPAWDL  229 (397)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCH----HHHHH-HHHHHGGGCCSCEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCH----HHHHH-HHHHHHhCCCCEEE--------CC--------CChhhH
Confidence            6677889999999886  68899998878853    34344 35678889998774        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHH
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA  144 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRg  144 (282)
                      +...++.+. .++||++.+.+.|+++++++++ ..||.|++=-.
T Consensus       230 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~  272 (397)
T 2qde_A          230 DGMARLRGK-VATPIYADESAQELHDLLAIINKGAADGLMIKTQ  272 (397)
T ss_dssp             HHHHHHHTT-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred             HHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecc
Confidence            777777664 5899999999999999999998 77999988533

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=97.07  E-value=0.0027  Score=60.17  Aligned_cols=101  Identities=7%  Similarity=-0.054  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++||+++  ++++.|+..-||+.    .+..+ +++.+++.|+++|.-        .        +++-++
T Consensus       212 ~~~~die~v~avReavG~d~~L~vDaN~~~~~----~~Ai~-~~~~Le~~~i~~iEe--------P--------~~~~d~  270 (412)
T 3stp_A          212 GMRENLKRVEAVREVIGYDNDLMLECYMGWNL----DYAKR-MLPKLAPYEPRWLEE--------P--------VIADDV  270 (412)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEEC--------C--------SCTTCH
T ss_pred             hHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEEC--------C--------CCcccH
Confidence            4577888999999987  68999999888864    33333 456788999998841        1        122246


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      +...++.+. .++||.+.+.+.|+++++++++ ..||.|++--+-.
T Consensus       271 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~  315 (412)
T 3stp_A          271 AGYAELNAM-NIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRV  315 (412)
T ss_dssp             HHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHH
T ss_pred             HHHHHHHhC-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhc
Confidence            777777765 6899999999999999999999 6799987654443

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=97.06  E-value=0.0017  Score=61.04  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=74.9

Q ss_pred             cCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      .++++...+++++|++++  ++++.++..-+|+.    ++..++ ++.+++.|+++|.        +..        ++-
T Consensus       189 ~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~----~~ai~~-~~~l~~~~i~~iE--------~P~--------~~~  247 (403)
T 2ox4_A          189 SETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL----VSAIQF-AKAIEEFNIFFYE--------EIN--------TPL  247 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHHH-HHHHGGGCEEEEE--------CCS--------CTT
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHHH-HHHHHhhCCCEEe--------CCC--------Chh
Confidence            356788889999999987  68999998877853    344443 5568888888763        111        222


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +|+...++.+. .++||++.+.+.|+++++++++ ..||.|++-
T Consensus       248 d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  290 (403)
T 2ox4_A          248 NPRLLKEAKKK-IDIPLASGERIYSRWGFLPFLEDRSIDVIQPD  290 (403)
T ss_dssp             STHHHHHHHHT-CCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             hHHHHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence            36777777665 5899999999999999999998 679998774

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=97.04  E-value=0.0042  Score=57.76  Aligned_cols=97  Identities=7%  Similarity=-0.014  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.++..-||+..+ .   .+ +++.+++.|+++|.        +.        +++-++
T Consensus       170 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~-a---~~-~~~~l~~~~i~~iE--------qP--------~~~~~~  228 (370)
T 1chr_A          170 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQV-A---SV-YIPELEALGVELIE--------QP--------VGRENT  228 (370)
T ss_dssp             CSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTH-H---HH-HTHHHHTTTEEEEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH-H---HH-HHHHHHhcCCCEEE--------CC--------CCcccH
Confidence            5666678888888887  4789999988887532 2   22 34567888887774        11        122236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||.+++.+.|.+|+.++++ ..||.|++-
T Consensus       229 ~~~~~l~~~-~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k  269 (370)
T 1chr_A          229 QALRRLSDN-NRVAIMADESLSTLASAFDLARDRSVDVFSLK  269 (370)
T ss_dssp             HHHHHHHHH-SCSEEEESSSCCSHHHHHHHHTTTSCSEEEEC
T ss_pred             HHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEEC
Confidence            667777665 5899999999999999999998 679999874

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=97.04  E-value=0.0072  Score=56.53  Aligned_cols=96  Identities=7%  Similarity=-0.105  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHh--CCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~--~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..++ ++.+++  .++.+|.        +.        +++-
T Consensus       172 ~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~----~~a~~~-~~~l~~~g~~i~~iE--------qP--------~~~~  230 (389)
T 2oz8_A          172 DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTS----KEALTK-LVAIREAGHDLLWVE--------DP--------ILRH  230 (389)
T ss_dssp             SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCH----HHHHHH-HHHHHHTTCCCSEEE--------SC--------BCTT
T ss_pred             CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCH----HHHHHH-HHHHHhcCCCceEEe--------CC--------CCCc
Confidence            5678889999999988  68899998878853    344443 456788  6776653        11        1222


Q ss_pred             cHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          100 KYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       100 ~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +|+...++.+. . ++||++.+.+ |+++++++++ ..||.|++.
T Consensus       231 ~~~~~~~l~~~-~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik  273 (389)
T 2oz8_A          231 DHDGLRTLRHA-VTWTQINSGEYL-DLQGKRLLLEAHAADILNVH  273 (389)
T ss_dssp             CHHHHHHHHHH-CCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred             CHHHHHHHHhh-CCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence            47777777765 5 7999999999 9999999998 679999998

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=97.03  E-value=0.004  Score=58.53  Aligned_cols=97  Identities=8%  Similarity=-0.015  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..++ ++.+++.|+++|.        +..        ++-+|
T Consensus       202 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~----~~ai~~-~~~l~~~~i~~iE--------qP~--------~~~d~  260 (398)
T 2pp0_A          202 NCAEDIRRLTAVREALGDEFPLMVDANQQWDR----ETAIRM-GRKMEQFNLIWIE--------EPL--------DAYDI  260 (398)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCEEEECTTCSCH----HHHHHH-HHHHGGGTCSCEE--------CCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HHHHHH-HHHHHHcCCceee--------CCC--------ChhhH
Confidence            6788889999999986  68999998878853    344443 4567889998774        111        22247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||++.+.+.|+++++++++ ..||.|++-
T Consensus       261 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik  301 (398)
T 2pp0_A          261 EGHAQLAAA-LDTPIATGEMLTSFREHEQLILGNASDFVQPD  301 (398)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            777777765 4899999999999999999998 679988774

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=97.01  E-value=0.0011  Score=57.05  Aligned_cols=64  Identities=14%  Similarity=0.070  Sum_probs=50.2

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+|.|.+|+-. . .|            ..++++.+....+++||++.|||+ .+++.++++.|+|+|.+|++++.
T Consensus       121 ~~~Gad~v~~fpa~-~-~g------------G~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~  184 (207)
T 2yw3_A          121 LALGLSALKFFPAE-P-FQ------------GVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ  184 (207)
T ss_dssp             HHTTCCEEEETTTT-T-TT------------HHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred             HHCCCCEEEEecCc-c-cc------------CHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence            47899999997611 0 10            146676776666689999999995 79999999999999999988776

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=97.01  E-value=0.0069  Score=55.11  Aligned_cols=96  Identities=15%  Similarity=0.114  Sum_probs=61.7

Q ss_pred             CCccEEEEecC-C--CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc---CC
Q 023442           39 TNVPVSVKCRI-G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD---FP  112 (282)
Q Consensus        39 ~~ipvsvKiR~-G--~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~---~~  112 (282)
                      .++|+.+=+-. |  ..+.....+.....++.+.+.|+|.+-+|.-..   +..          .++.+.++++.   ..
T Consensus       154 ~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~---~~g----------~~~~~~~vv~~~~~~~  220 (304)
T 1to3_A          154 NGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLY---GKG----------ARSDLLTASQRLNGHI  220 (304)
T ss_dssp             TTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGG---GCS----------CHHHHHHHHHHHHHTC
T ss_pred             cCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcC---CCC----------CHHHHHHHHHhccccC
Confidence            48898776521 1  211112212333446678899999999997321   111          15555555543   24


Q ss_pred             Cce-EEEccCCCCHHH----HHHHHHcCCCEEEecHHhhhC
Q 023442          113 DLT-FTLNGGINTVDE----VNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       113 ~ip-Vi~nGdI~s~ed----a~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+| |+..||+ +.++    +..+++.|++||.+||++...
T Consensus       221 ~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~  260 (304)
T 1to3_A          221 NMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS  260 (304)
T ss_dssp             CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred             CCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence            789 9999999 6644    566666899999999999877

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=97.01  E-value=0.0049  Score=57.19  Aligned_cols=102  Identities=9%  Similarity=0.005  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHH-HhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVS-SLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~l-e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..+ +++.+ ++.|+ +|.        +..        +  +
T Consensus       172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~~i-~iE--------~P~--------~--~  227 (371)
T 2ps2_A          172 EPVTDAKRITAALANQQPDEFFIVDANGKLSV----ETALR-LLRLLPHGLDF-ALE--------APC--------A--T  227 (371)
T ss_dssp             CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCH----HHHHH-HHHHSCTTCCC-EEE--------CCB--------S--S
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCH----HHHHH-HHHHHHhhcCC-cCc--------CCc--------C--C
Confidence            5788889999999987  68999999888853    34344 35567 78888 663        100        1  3


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~  150 (282)
                      |+...++.+. .++||++++.++|+++++++++ ..||.|++--+-++..+
T Consensus       228 ~~~~~~l~~~-~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit  277 (371)
T 2ps2_A          228 WRECISLRRK-TDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLT  277 (371)
T ss_dssp             HHHHHHHHTT-CCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHH
T ss_pred             HHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHH
Confidence            7777777664 5899999999999999999998 77999999776666654

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=96.99  E-value=0.0033  Score=58.59  Aligned_cols=98  Identities=11%  Similarity=0.008  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++||+++  ++++.++..-||++   ..+..+ +++.+++.|+++|.        +.        +++-++
T Consensus       175 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d---~~~A~~-~~~~l~~~~i~~iE--------qP--------~~~~~~  234 (374)
T 3sjn_A          175 DPDTDYAIVKAVREAAGPEMEVQIDLASKWHT---CGHSAM-MAKRLEEFNLNWIE--------EP--------VLADSL  234 (374)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTTTCS---HHHHHH-HHHHSGGGCCSEEE--------CS--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCC---HHHHHH-HHHHhhhcCceEEE--------CC--------CCcccH
Confidence            5788889999999986  68999999988973   223333 45677889998884        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||.+++.+.|++++.++++ ..||.|++-
T Consensus       235 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  275 (374)
T 3sjn_A          235 ISYEKLSRQ-VSQKIAGGESLTTRYEFQEFITKSNADIVQPD  275 (374)
T ss_dssp             HHHHHHHHH-CSSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred             HHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            777777665 5899999999999999999998 789988663

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=96.97  E-value=0.0032  Score=59.30  Aligned_cols=103  Identities=9%  Similarity=0.015  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++...+++++|++++  ++++.++..-||+.    .+..+ +++.+++.|+++|.=        ..        ++-+++
T Consensus       184 ~~~d~~~v~avR~a~G~d~~l~vDan~~~~~----~~A~~-~~~~L~~~~i~~iEq--------P~--------~~~~~~  242 (401)
T 3sbf_A          184 MDNTLTMFKSLREKYGNQFHILHDVHERLFP----NQAIQ-FAKEVEQYKPYFIED--------IL--------PPNQTE  242 (401)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSCEEC--------SS--------CTTCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEEC--------CC--------ChhHHH
Confidence            567788999999987  68999999888864    23333 456788899888841        11        111245


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      ...++.+. .++||.+++.+.|+++++++++ ..||.|++--+-.+..
T Consensus       243 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi  289 (401)
T 3sbf_A          243 WLDNIRSQ-SSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGI  289 (401)
T ss_dssp             GHHHHHTT-CCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSH
T ss_pred             HHHHHHhh-CCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCH
Confidence            55566554 6899999999999999999998 6799988765444443

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=96.97  E-value=0.0053  Score=56.76  Aligned_cols=104  Identities=3%  Similarity=-0.069  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+++++|++++  ++++.++..-||+.    ++..+ +++.+++.|+++|.        +.        +++-++
T Consensus       165 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~----~~a~~-~~~~L~~~~i~~iE--------qP--------~~~~d~  223 (354)
T 3jva_A          165 GIEADIARVKAIREAVGFDIKLRLDANQAWTP----KDAVK-AIQALADYQIELVE--------QP--------VKRRDL  223 (354)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHH-HHHHTTTSCEEEEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CC--------CChhhH
Confidence            3455667778888766  57888888777753    23233 34566777777774        11        122246


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      +...++.+. .++||.+.+.++|++|+.++++ ..||.|++--+-.+..
T Consensus       224 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGi  271 (354)
T 3jva_A          224 EGLKYVTSQ-VNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGI  271 (354)
T ss_dssp             HHHHHHHHH-CSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSH
T ss_pred             HHHHHHHHh-CCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCH
Confidence            777777665 5899999999999999999998 7899999876555544

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.94  E-value=0.01  Score=51.29  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=66.2

Q ss_pred             HHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhC--CCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS--PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA  106 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~--Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~  106 (282)
                      .++++.+++. ++.+.+-+....+    .+. +   .. +.+.  ++|++.+-+......|.      ...+..++.+.+
T Consensus       103 ~~~~~~i~~~-g~~igv~~~p~t~----~e~-~---~~-~~~~~~~~d~vl~~sv~pg~~g~------~~~~~~l~~i~~  166 (228)
T 1h1y_A          103 QELIQSIKAK-GMRPGVSLRPGTP----VEE-V---FP-LVEAENPVELVLVMTVEPGFGGQ------KFMPEMMEKVRA  166 (228)
T ss_dssp             HHHHHHHHHT-TCEEEEEECTTSC----GGG-G---HH-HHHSSSCCSEEEEESSCTTCSSC------CCCGGGHHHHHH
T ss_pred             HHHHHHHHHc-CCCEEEEEeCCCC----HHH-H---HH-HHhcCCCCCEEEEEeecCCCCcc------cCCHHHHHHHHH
Confidence            5666776654 5555544432221    111 1   11 2344  89999886543221221      122233555666


Q ss_pred             HHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          107 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       107 l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.+...++||++-|||+. +.+.++++.|+|+|.+|++++..|..
T Consensus       167 ~~~~~~~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~~~d~  210 (228)
T 1h1y_A          167 LRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGAAEP  210 (228)
T ss_dssp             HHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             HHHhcCCCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCCH
Confidence            655434899999999976 89999988999999999999887763

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=96.94  E-value=0.0041  Score=58.45  Aligned_cols=97  Identities=10%  Similarity=-0.077  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCC-CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~-d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++.-.+++++|++++  ++++.++..-|| +.    .+..+ +++.+++.|+++|.        +-        +++-+
T Consensus       182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~----~~A~~-~~~~L~~~~i~~iE--------eP--------~~~~~  240 (394)
T 3mqt_A          182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDW----QKARW-TFRQLEDIDLYFIE--------AC--------LQHDD  240 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCH----HHHHH-HHHHTGGGCCSEEE--------SC--------SCTTC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCH----HHHHH-HHHHHhhcCCeEEE--------CC--------CCccc
Confidence            5777788899999886  688999888888 43    23333 45677888988884        11        12223


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++...++.+. .++||++.+.+.|+++++++++ ..||.|.+-
T Consensus       241 ~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  282 (394)
T 3mqt_A          241 LIGHQKLAAA-INTRLCGAEMSTTRFEAQEWLEKTGISVVQSD  282 (394)
T ss_dssp             HHHHHHHHHH-SSSEEEECTTCCHHHHHHHHHHHHCCSEECCC
T ss_pred             HHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHcCCCCeEecC
Confidence            6667777665 5899999999999999999998 679988764

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=96.94  E-value=0.0031  Score=59.31  Aligned_cols=97  Identities=8%  Similarity=-0.035  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      ++++...+++++|++++  ++++.++..-+|+.    ++..+ +++.+++.|+++|.-        .        +++-+
T Consensus       196 ~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE~--------P--------~~~~~  254 (407)
T 2o56_A          196 KILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT----TSAIQ-FGRMIEELGIFYYEE--------P--------VMPLN  254 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSCEEC--------S--------SCSSS
T ss_pred             hHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEeC--------C--------CChhh
Confidence            46688889999999987  68899998877753    34444 356688999987741        1        12234


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      |+...++.+. .++||++.+.+.|+++++++++ ..||.|++
T Consensus       255 ~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  295 (407)
T 2o56_A          255 PAQMKQVADK-VNIPLAAGERIYWRWGYRPFLENGSLSVIQP  295 (407)
T ss_dssp             HHHHHHHHHH-CCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence            7777777765 5899999999999999999998 66998876

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=96.93  E-value=0.0054  Score=57.42  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.+...-||+.    ++..++ ++.+++.|+++|.        +.        +++-+|
T Consensus       192 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~a~~~-~~~l~~~~i~~iE--------qP--------~~~~d~  250 (392)
T 1tzz_A          192 PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNL----ETGIAY-AKMLRDYPLFWYE--------EV--------GDPLDY  250 (392)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCH----HHHHHH-HHHHTTSCCSEEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----HHHHHH-HHHHHHcCCCeec--------CC--------CChhhH
Confidence            5677888999999876  58899988878853    343443 5567888988774        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-c----CCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K----GAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~----g~DgVmI  141 (282)
                      +...++.+. .++||++.+.++|+++++++++ .    .||.|++
T Consensus       251 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~i  294 (392)
T 1tzz_A          251 ALQAALAEF-YPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQF  294 (392)
T ss_dssp             HHHHHHTTT-CCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECC
T ss_pred             HHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEE
Confidence            777777654 5899999999999999999998 5    6998877

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.93  E-value=0.0013  Score=56.30  Aligned_cols=52  Identities=17%  Similarity=0.016  Sum_probs=43.6

Q ss_pred             CccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442           98 PLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus        98 ~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +..|+.+.++.+.. +++||++-|||+ ++++.++++.|++||.+++++...+.
T Consensus       128 ~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~~~d  180 (210)
T 3ceu_A          128 TYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWNKFD  180 (210)
T ss_dssp             CCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHTTCC
T ss_pred             CCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHcCCC
Confidence            34588887777643 589999999996 99999999999999999999987554

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=96.91  E-value=0.0043  Score=58.62  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.|...-||+.    ++..+ +++.+++.|+++|.        +.        +++-++
T Consensus       160 ~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iE--------eP--------~~~~d~  218 (405)
T 3rr1_A          160 AVDAAVARVAEIRSAFGNTVEFGLDFHGRVSA----PMAKV-LIKELEPYRPLFIE--------EP--------VLAEQA  218 (405)
T ss_dssp             HHHHHHHHHHHHHHTTGGGSEEEEECCSCBCH----HHHHH-HHHHHGGGCCSCEE--------CS--------SCCSST
T ss_pred             hHHHHHHHHHHHHHHhCCCceEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CC--------CCcccH
Confidence            4566778899999987  68899988878864    33333 45678888988874        11        112236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      +...++.+. .++||++.+.+.|+++++++++ ..||.|++--+-
T Consensus       219 ~~~~~l~~~-~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~  262 (405)
T 3rr1_A          219 ETYARLAAH-THLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSH  262 (405)
T ss_dssp             HHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTT
T ss_pred             HHHHHHHhc-CCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhh
Confidence            666677664 6899999999999999999998 679998875433

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=96.86  E-value=0.0092  Score=55.61  Aligned_cols=100  Identities=6%  Similarity=0.017  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.|+..-||+..+ ..+    +++.+++.|+.+|.        +.        +++-++
T Consensus       173 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~-A~~----~~~~l~~~~i~~iE--------qP--------~~~~d~  231 (377)
T 3my9_A          173 PHAEELRILETMRGEFGERIDLRLDFNQALTPFG-AMK----ILRDVDAFRPTFIE--------QP--------VPRRHL  231 (377)
T ss_dssp             CHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTT-HHH----HHHHHHTTCCSCEE--------CC--------SCTTCH
T ss_pred             cHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHH-HHH----HHHHHhhcCCCEEE--------CC--------CCccCH
Confidence            3455667778888776  5788888888887533 222    34567788888774        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      +...++.+. .++||.+++.+.|++|+.++++ ..||.|++--+-
T Consensus       232 ~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~  275 (377)
T 3my9_A          232 DAMAGFAAA-LDTPILADESCFDAVDLMEVVRRQAADAISVKIMK  275 (377)
T ss_dssp             HHHHHHHHH-CSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHH
T ss_pred             HHHHHHHHh-CCCCEEECCccCCHHHHHHHHHcCCCCEEEecccc
Confidence            777777665 5899999999999999999998 779998775333

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=96.84  E-value=0.0063  Score=54.01  Aligned_cols=118  Identities=17%  Similarity=0.267  Sum_probs=74.8

Q ss_pred             HHHHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc-------
Q 023442           30 EAMSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA-------   83 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~-------   83 (282)
                      +-++++++.+++||-.|==            .|-|--      -+-.++.+ +...+.+.|.+.+ .||....       
T Consensus        94 ~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~-l~~~A~~lGl~~LvEVh~~~El~rAl~~  172 (258)
T 4a29_A           94 ETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELES-LLEYARSYGMEPLILINDENDLDIALRI  172 (258)
T ss_dssp             HHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHH-HHHHHHHTTCCCEEEESSHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHHHHH-HHHHHHHHhHHHHHhcchHHHHHHHhcC
Confidence            5567888889999987721            122210      01112222 3345567776544 4664320       


Q ss_pred             --ccCCCCcCCcCCC--CCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           84 --LLNGISPAENRTI--PPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        84 --~~~G~~~ad~~~i--~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                        ..=|.   +|+..  -.++.+...++....| ++.+|+-+||.|++|+.++.+.|+|+|.||.++|.+|.-
T Consensus       173 ~a~iIGI---NNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~  242 (258)
T 4a29_A          173 GARFIGI---MSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEK  242 (258)
T ss_dssp             TCSEEEE---CSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             CCcEEEE---eCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcH
Confidence              01121   22211  1334666667776654 588999999999999999999999999999999999973

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=96.83  E-value=0.0056  Score=57.79  Aligned_cols=95  Identities=6%  Similarity=0.010  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+...+++++|++++  ++++.|+..-||+.    ++..+ +++.+++.|+++|..-.                  -+++
T Consensus       196 ~~~~~e~v~avR~avG~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iE~P~------------------~d~~  252 (409)
T 3go2_A          196 LRNLRAHLEALRDGAGPDVEILLDLNFNAKP----EGYLK-ILRELADFDLFWVEIDS------------------YSPQ  252 (409)
T ss_dssp             HHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHH-HHHHTTTSCCSEEECCC------------------SCHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHhhcCCeEEEeCc------------------CCHH
Confidence            456778999999987  68999998888864    33333 45678899999987321                  1266


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      ...++.+. .++||++.+.+.|+++++++++ ..||.|++=-
T Consensus       253 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~  293 (409)
T 3go2_A          253 GLAYVRNH-SPHPISSCETLFGIREFKPFFDANAVDVAIVDT  293 (409)
T ss_dssp             HHHHHHHT-CSSCEEECTTCCHHHHHHHHHHTTCCSEEEECH
T ss_pred             HHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCC
Confidence            66677664 6899999999999999999999 6699988753

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=96.82  E-value=0.0023  Score=60.68  Aligned_cols=100  Identities=6%  Similarity=-0.014  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    .+..+ +++.+++.|+++|.=        ..        ++-++
T Consensus       202 ~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEq--------P~--------~~~d~  260 (418)
T 3r4e_A          202 ALNYVPKLFEELRKTYGFDHHLLHDGHHRYTP----QEAAN-LGKMLEPYQLFWLED--------CT--------PAENQ  260 (418)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEES--------CS--------CCSSG
T ss_pred             HHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCH----HHHHH-HHHHHHhhCCCEEEC--------CC--------CccCH
Confidence            3567788999999987  68999999888864    33333 456788999998851        11        11124


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      +...++.+. .++||++.+.+.|+++++++++ ..||.|++--+-
T Consensus       261 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~  304 (418)
T 3r4e_A          261 EAFRLVRQH-TVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVG  304 (418)
T ss_dssp             GGGHHHHHH-CCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTT
T ss_pred             HHHHHHHhc-CCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccc
Confidence            445566654 5899999999999999999999 669988765333

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.81  E-value=0.0053  Score=56.46  Aligned_cols=108  Identities=16%  Similarity=0.217  Sum_probs=72.8

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC--CCEEEEecCCcccCCCC
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP--TRHFIIHSRKALLNGIS   89 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G--v~~i~VH~Rt~~~~G~~   89 (282)
                      .+.+.+|.....+++...+.++.+++. ++|+++.+  |+.. +.    .+. ++.+.++|  ++.+.++..    .|. 
T Consensus        67 ~~~gg~g~~~~~~~~~~~~~i~~~~~~-g~~v~v~~--g~~~-~~----~~~-a~~~~~~g~~~~~i~i~~~----~G~-  132 (336)
T 1ypf_A           67 AENNYFYIMHRFQPEKRISFIRDMQSR-GLIASISV--GVKE-DE----YEF-VQQLAAEHLTPEYITIDIA----HGH-  132 (336)
T ss_dssp             HHTTCCCCCCCSSGGGHHHHHHHHHHT-TCCCEEEE--CCSH-HH----HHH-HHHHHHTTCCCSEEEEECS----SCC-
T ss_pred             HhCCCEEEecCCCCHHHHHHHHHHHhc-CCeEEEeC--CCCH-HH----HHH-HHHHHhcCCCCCEEEEECC----CCC-
Confidence            344555656666777777888877653 66888873  5532 11    122 34456788  999988752    121 


Q ss_pred             cCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           90 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        90 ~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                             ++..|+.+..+++..+.+||+ .|.|.|+++++++.+.|||+|.+
T Consensus       133 -------~~~~~~~i~~lr~~~~~~~vi-~G~v~s~e~A~~a~~aGad~Ivv  176 (336)
T 1ypf_A          133 -------SNAVINMIQHIKKHLPESFVI-AGNVGTPEAVRELENAGADATKV  176 (336)
T ss_dssp             -------SHHHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred             -------cHHHHHHHHHHHHhCCCCEEE-ECCcCCHHHHHHHHHcCCCEEEE
Confidence                   123477888887765445555 57799999999999999999999

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=96.79  E-value=0.0055  Score=57.55  Aligned_cols=97  Identities=8%  Similarity=-0.090  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCC-CCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGV-DDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~-d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++.-.+++++|++++  ++++.+...-|| +.    ++..+ +++.+++.|+++|.        +-        +++-+
T Consensus       187 ~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~----~~A~~-~~~~L~~~~i~~iE--------eP--------~~~~d  245 (394)
T 3mkc_A          187 STKEVAYYLRELRGILGHDTDMMVDYLYRFTDW----YEVAR-LLNSIEDLELYFAE--------AT--------LQHDD  245 (394)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCH----HHHHH-HHHHTGGGCCSEEE--------SC--------SCTTC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCH----HHHHH-HHHHhhhcCCeEEE--------CC--------CCchh
Confidence            5777788899999887  688999888888 43    23333 45677888988874        11        12223


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++...++.+. .++||++.+.+.|++++.++++ ..||.|++-
T Consensus       246 ~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  287 (394)
T 3mkc_A          246 LSGHAKLVEN-TRSRICGAEMSTTRFEAEEWITKGKVHLLQSD  287 (394)
T ss_dssp             HHHHHHHHHH-CSSCBEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred             HHHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCeEecC
Confidence            6667777665 5899999999999999999999 679988664

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=96.79  E-value=0.0055  Score=57.16  Aligned_cols=96  Identities=7%  Similarity=-0.031  Sum_probs=71.0

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhC-CCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLS-PTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~-Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..+ +++.+++. |+++|.        +.        +++-+
T Consensus       166 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~~i~~iE--------qP--------~~~~d  224 (382)
T 2gdq_A          166 SFKEDVRHINALQHTAGSSITMILDANQSYDA----AAAFK-WERYFSEWTNIGWLE--------EP--------LPFDQ  224 (382)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH----HHHHT-THHHHTTCSCEEEEE--------CC--------SCSSC
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCH----HHHHH-HHHHHhhccCCeEEE--------CC--------CCccc
Confidence            5788888899998877  68888888877753    33333 34567788 877663        11        12224


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      |+...++.+. .++||++.+.+.|+++++++++ ..||.|++
T Consensus       225 ~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  265 (382)
T 2gdq_A          225 PQDYAMLRSR-LSVPVAGGENMKGPAQYVPLLSQRCLDIIQP  265 (382)
T ss_dssp             HHHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence            7777777664 5899999999999999999998 66998876

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=96.77  E-value=0.0034  Score=54.36  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             HhCCCCEEEEecCCcccCCC--CcCCcCCCCCccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           69 SLSPTRHFIIHSRKALLNGI--SPAENRTIPPLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~--~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .+.|.+.|.++.|...=.|.  ....     +-..+.+.++++..+ ++||++-|+|.+++++..+.+.|+|||.||+++
T Consensus       128 ~~~~~~~i~~~~~~~iGtG~~~~t~~-----~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi  202 (219)
T 2h6r_A          128 AALSPDCIAVEPPELIGTGIPVSKAN-----PEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGV  202 (219)
T ss_dssp             TTTCCSEEEECCCC-------------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHH
T ss_pred             HhCCCCEEEEEeccccccCCCCccCC-----HHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHH
Confidence            45677778888775311221  0010     101233334444433 799999999999999999988999999999999


Q ss_pred             hhCCc
Q 023442          146 YQNPW  150 (282)
Q Consensus       146 l~nP~  150 (282)
                      +.-+.
T Consensus       203 ~~~~d  207 (219)
T 2h6r_A          203 VKAKN  207 (219)
T ss_dssp             HTCSS
T ss_pred             hCccc
Confidence            88776

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=96.76  E-value=0.008  Score=56.46  Aligned_cols=97  Identities=9%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc-
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK-  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~-  100 (282)
                      +++.-.+.+++|++++  ++++.|+..-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-+ 
T Consensus       181 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iE--------eP--------~~~~d~  239 (392)
T 3ddm_A          181 DDARDVRNALHVRELLGAATPLMADANQGWDL----PRARQ-MAQRLGPAQLDWLE--------EP--------LRADRP  239 (392)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCH----HHHHH-HHHHHGGGCCSEEE--------CC--------SCTTSC
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCH----HHHHH-HHHHHHHhCCCEEE--------CC--------CCccch
Confidence            6777888999999986  68999999888864    23333 45678889998885        11        12223 


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++...++.+. .++||.+.+.+.|++|+.++++ ..||.|++-
T Consensus       240 ~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k  281 (392)
T 3ddm_A          240 AAEWAELAQA-APMPLAGGENIAGVAAFETALAARSLRVMQPD  281 (392)
T ss_dssp             HHHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred             HHHHHHHHHh-cCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence            6666677665 5899999999999999999998 678887663

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=96.68  E-value=0.0041  Score=59.10  Aligned_cols=100  Identities=4%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+...+++++|++++  ++++.|...-||+.    .+..+ +++.+++.|+++|.=        -.        ++-+++
T Consensus       209 ~~~d~e~v~avR~avG~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEq--------P~--------~~~d~~  267 (424)
T 3v3w_A          209 LNYIPDVFAAVRKEFGPDIHLLHDVHHRLTP----IEAAR-LGKALEPYHLFWMED--------AV--------PAENQE  267 (424)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCCCH----HHHHH-HHHHHGGGCCSEEEC--------CS--------CCSSTT
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEEeCCCCCCH----HHHHH-HHHHHHhcCCCEEEC--------CC--------ChHhHH
Confidence            467788999999987  68999998888864    33333 456788999998851        11        111245


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      ...++.+. .++||++.+.+.|+++++++++ ..||.|++--+-.
T Consensus       268 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~  311 (424)
T 3v3w_A          268 SFKLIRQH-TTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHA  311 (424)
T ss_dssp             HHHHHHHH-CCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTT
T ss_pred             HHHHHHhh-CCCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhc
Confidence            55666665 5899999999999999999999 6699887754333

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=96.66  E-value=0.0077  Score=57.19  Aligned_cols=96  Identities=7%  Similarity=-0.038  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.++..-||+.    ++..++ ++.+++.|+++|.        +.        +++-++
T Consensus       211 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~----~eai~~-~~~L~~~~i~~iE--------qP--------~~~~d~  269 (428)
T 3bjs_A          211 AARVDIERVRHVRKVLGDEVDILTDANTAYTM----ADARRV-LPVLAEIQAGWLE--------EP--------FACNDF  269 (428)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH----HHHHHH-HHHHHHTTCSCEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH----HHHHHH-HHHHHhcCCCEEE--------CC--------CCccCH
Confidence            5778889999999886  68899988877753    344443 4567889998774        11        122236


Q ss_pred             HHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPD-LTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+. .+ +||++.+.+.|+++++++++ ..||.|++
T Consensus       270 ~~~~~l~~~-~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  310 (428)
T 3bjs_A          270 ASYREVAKI-TPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP  310 (428)
T ss_dssp             HHHHHHTTT-CSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHHh-CCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence            777677654 57 99999999999999999998 56888766

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.65  E-value=0.0038  Score=52.80  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             HHhCCCCEEEEe-cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIH-SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +++.|++.+.+| +.+....|.        ++.. +.++++...  ++||++-|||+ ++.+.++++.|+|+|.+||+++
T Consensus       123 ~~~~g~d~v~~~~~~~~~~~g~--------~~~~-~~i~~~~~~--~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~  190 (207)
T 3ajx_A          123 VRALGAKFVEMHAGLDEQAKPG--------FDLN-GLLAAGEKA--RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIY  190 (207)
T ss_dssp             HHHTTCSEEEEECCHHHHTSTT--------CCTH-HHHHHHHHH--TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHH
T ss_pred             HHHhCCCEEEEEecccccccCC--------CchH-HHHHHhhCC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeecc
Confidence            346789999555 443222232        1222 445555432  68999999997 8899999999999999999998


Q ss_pred             hCCc
Q 023442          147 QNPW  150 (282)
Q Consensus       147 ~nP~  150 (282)
                      ..+.
T Consensus       191 ~~~d  194 (207)
T 3ajx_A          191 GAAD  194 (207)
T ss_dssp             TSSS
T ss_pred             CCCC
Confidence            7665

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=96.65  E-value=0.0075  Score=57.06  Aligned_cols=102  Identities=11%  Similarity=0.006  Sum_probs=75.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++||+++  ++++.++..-||+.    .+..+ +++.+++.|+.+|.=        -        +++-++
T Consensus       183 ~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEe--------P--------~~~~d~  241 (412)
T 4e4u_A          183 VLDRCELFCRRVREAVGSKADLLFGTHGQMVP----SSAIR-LAKRLEKYDPLWFEE--------P--------VPPGQE  241 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSEEEECCCSCBCH----HHHHH-HHHHHGGGCCSEEEC--------C--------SCSSCH
T ss_pred             hHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHH-HHHHhhhcCCcEEEC--------C--------CChhhH
Confidence            3667788899999987  68999988888864    33333 456788999988851        1        122236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~  147 (282)
                      +...++.+. .++||.+.+.+.|+++++++++ ..||.|++--+-.+
T Consensus       242 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~G  287 (412)
T 4e4u_A          242 EAIAQVAKH-TSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVG  287 (412)
T ss_dssp             HHHHHHHHT-CSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTT
T ss_pred             HHHHHHHhh-CCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccC
Confidence            777777664 5899999999999999999999 66998876543333

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.65  E-value=0.012  Score=54.79  Aligned_cols=95  Identities=14%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .++...+.++.+++..++||.+-+-  ...    .+.    ++.+.++|++.|+++.-.    |.+        ..-.+.
T Consensus        79 s~e~~~~~I~~vk~~~~~pvga~ig--~~~----~e~----a~~l~eaGad~I~ld~a~----G~~--------~~~~~~  136 (361)
T 3khj_A           79 DMESQVNEVLKVKNSGGLRVGAAIG--VNE----IER----AKLLVEAGVDVIVLDSAH----GHS--------LNIIRT  136 (361)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEEC--TTC----HHH----HHHHHHTTCSEEEECCSC----CSB--------HHHHHH
T ss_pred             CHHHHHHHHHHHHhccCceEEEEeC--CCH----HHH----HHHHHHcCcCeEEEeCCC----CCc--------HHHHHH
Confidence            5777888889998877788887763  322    222    234567999999987421    210        001355


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.++++.+ ++||++ |++.|+++++.+.+.|+|+|.+|
T Consensus       137 i~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          137 LKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG  173 (361)
T ss_dssp             HHHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence            66666655 889987 67899999999999999999996

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=96.64  E-value=0.0054  Score=58.23  Aligned_cols=103  Identities=8%  Similarity=0.018  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++...+++++||+++  ++++.++..-||+.    .+..+ +++.+++.|+.+|.        +..        ++-+++
T Consensus       205 ~~~d~e~v~avR~avG~d~~L~vDaN~~~~~----~~A~~-~~~~Le~~~i~~iE--------qP~--------~~~d~~  263 (422)
T 3tji_A          205 MSNTVEMFHALREKYGWKLHILHDVHERLFP----QQAVQ-LAKQLEPFQPYFIE--------DIL--------PPQQSA  263 (422)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEE--------CCS--------CGGGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhhCCCeEE--------CCC--------ChhhHH
Confidence            567788899999987  68999999888864    23333 45678889998885        111        122245


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      ...++.+. .++||.+.+.+.|+++++++++ ..||.|++--+-.+..
T Consensus       264 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGi  310 (422)
T 3tji_A          264 WLEQVRQQ-SCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGI  310 (422)
T ss_dssp             GHHHHHHH-CCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSH
T ss_pred             HHHHHHhh-CCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCH
Confidence            55666665 5899999999999999999998 6799988765544443

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.64  E-value=0.003  Score=55.08  Aligned_cols=120  Identities=14%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc----------------c---
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA----------------L---   84 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~----------------~---   84 (282)
                      +.....++++++++.+++||.+............++   + .+.+.++|++.+++|.-..                .   
T Consensus        64 ~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~---~-~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~  139 (248)
T 1geq_A           64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRN---F-LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFL  139 (248)
T ss_dssp             CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHH---H-HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEE
T ss_pred             CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHH---H-HHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEE
Confidence            667778999999998889998865311000000122   2 2344578999999884110                0   


Q ss_pred             cCCCCc----------CC------------cC--CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           85 LNGISP----------AE------------NR--TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        85 ~~G~~~----------ad------------~~--~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      ....++          ++            ..  ..++..++.+.++++. .++||++.|||++.+++.++++.|+|+|.
T Consensus       140 i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~-~~~pi~~~GGI~~~e~i~~~~~~Gad~vi  218 (248)
T 1geq_A          140 AAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRI-CRNKVAVGFGVSKREHVVSLLKEGANGVV  218 (248)
T ss_dssp             ECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             ECCCCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhh-cCCCEEEEeecCCHHHHHHHHHcCCCEEE
Confidence            000000          01            00  0112235567777664 48999999999999999999999999999


Q ss_pred             ecHHhhhC
Q 023442          141 VGRAAYQN  148 (282)
Q Consensus       141 IGRgal~n  148 (282)
                      +|++++..
T Consensus       219 vGsai~~~  226 (248)
T 1geq_A          219 VGSALVKI  226 (248)
T ss_dssp             ECHHHHHH
T ss_pred             EcHHHHhh
Confidence            99998764

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=96.61  E-value=0.012  Score=54.71  Aligned_cols=96  Identities=13%  Similarity=0.055  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.|+..-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-++
T Consensus       179 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP--------~~~~d~  237 (372)
T 3tj4_A          179 DPNIDIARLTAVRERVDSAVRIAIDGNGKWDL----PTCQR-FCAAAKDLDIYWFE--------EP--------LWYDDV  237 (372)
T ss_dssp             SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCH----HHHHH-HHHHTTTSCEEEEE--------SC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCH----HHHHH-HHHHHhhcCCCEEE--------CC--------CCchhH
Confidence            3555566777777766  56777777766753    22222 34456666666553        11        122247


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+. .++||.+.+.+.|++|+.++++ ..+|.|++
T Consensus       238 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~  277 (372)
T 3tj4_A          238 TSHARLARN-TSIPIALGEQLYTVDAFRSFIDAGAVAYVQP  277 (372)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             HHHHHHHhh-cCCCEEeCCCccCHHHHHHHHHcCCCCEEEe
Confidence            777777665 5899999999999999999998 66887765

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=96.61  E-value=0.0044  Score=57.35  Aligned_cols=102  Identities=10%  Similarity=0.013  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.++..-+|+.    .+..+ +++.+++.|+.+|.        +..        ++-++
T Consensus       166 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP~--------~~~d~  224 (356)
T 3ro6_B          166 DEEQDFERLRRLHETLAGRAVVRVDPNQSYDR----DGLLR-LDRLVQELGIEFIE--------QPF--------PAGRT  224 (356)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCH----HHHHH-HHHHHHHTTCCCEE--------CCS--------CTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCH----HHHHH-HHHHHHhcCCCEEE--------CCC--------CCCcH
Confidence            5677778888888876  68899998888864    23233 45667888888884        111        12236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-c-CCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-K-GAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~-g~DgVmIGRgal~  147 (282)
                      +...++.+. .++||.+++.+.|++|+.++++ . .||.|++--+-.+
T Consensus       225 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~G  271 (356)
T 3ro6_B          225 DWLRALPKA-IRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCG  271 (356)
T ss_dssp             HHHHTSCHH-HHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHC
T ss_pred             HHHHHHHhc-CCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccC
Confidence            655555443 4799999999999999999998 6 7999998655443

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=96.60  E-value=0.0016  Score=55.48  Aligned_cols=47  Identities=19%  Similarity=0.209  Sum_probs=39.9

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +.+.++.+. .++|||+.|.|.|.+|+.++++.|||+|+.+...|++-
T Consensus       140 ~iI~~i~~~-~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~  186 (192)
T 3kts_A          140 EQVQKMTQK-LHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG  186 (192)
T ss_dssp             HHHHHHHHH-HCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred             HHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence            456666654 58999999999999999999999999999997766553

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.59  E-value=0.0041  Score=57.97  Aligned_cols=65  Identities=11%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++.+.++|++.|++|.-.    |.+        ..-|+.+..+++..+++||++ |+|.|+++++.+.+.|||+|.+|
T Consensus       105 ~~~a~~aGvdvI~id~a~----G~~--------~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A          105 AEALRDAGADFFCVDVAH----AHA--------KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             HHHHHHTTCCEEEEECSC----CSS--------HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHcCCCEEEEeCCC----CCc--------HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEEEEc
Confidence            345678999999997522    211        112677777776656899987 67999999999999999999985

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.57  E-value=0.0025  Score=62.62  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=56.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHH-----------HHHHH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE-----------VNAAL  132 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~ed-----------a~~~l  132 (282)
                      +++.+++.|++.|++--=+....|.  .    ..+...+.++++++. ..+||+..|||.+.+|           +++++
T Consensus       285 ~A~~~~~~Ga~~l~~~dl~~~~~~~--~----~~~~~~~~i~~i~~~-~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l  357 (555)
T 1jvn_A          285 LAQKYYQQGADEVTFLNITSFRDCP--L----KDTPMLEVLKQAAKT-VFVPLTVGGGIKDIVDVDGTKIPALEVASLYF  357 (555)
T ss_dssp             HHHHHHHTTCSEEEEEEEC---CCC--G----GGCHHHHHHHHHTTT-CCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEEeCCcccccc--C----CCchHHHHHHHHHhh-CCCcEEEeCccccchhcccccchHHHHHHHHH
Confidence            4667788999999875322221121  0    012236667777664 5899999999999844           99999


Q ss_pred             HcCCCEEEecHHhhhC
Q 023442          133 RKGAHHVMVGRAAYQN  148 (282)
Q Consensus       133 ~~g~DgVmIGRgal~n  148 (282)
                      +.|||.|.||.+++.|
T Consensus       358 ~aGad~V~igt~~~~~  373 (555)
T 1jvn_A          358 RSGADKVSIGTDAVYA  373 (555)
T ss_dssp             HHTCSEEEECHHHHHH
T ss_pred             HcCCCEEEECCHHhhC
Confidence            9999999999999884

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=96.56  E-value=0.0091  Score=56.97  Aligned_cols=103  Identities=9%  Similarity=0.032  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+...+++++|++++  ++++.|+..-+|+.    .+..+ +++.+++.|+.+|.        +..        ++-+++
T Consensus       223 ~~~d~~~v~avR~a~G~d~~L~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iE--------eP~--------~~~d~~  281 (440)
T 3t6c_A          223 AKSIPRLFDHLRNKLGFSVELLHDAHERITP----INAIH-MAKALEPYQLFFLE--------DPV--------APENTE  281 (440)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHTGGGCCSEEE--------CSS--------CGGGGG
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----HHHHH-HHHHhhhcCCCEEE--------CCC--------ChhhHH
Confidence            456778899999987  68999999988864    23333 45677888998884        111        122345


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCC
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP  149 (282)
                      ...++.+. .++||.+++.+.|.+++.++++ ..||.|++--+-.+..
T Consensus       282 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi  328 (440)
T 3t6c_A          282 WLKMLRQQ-SSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGI  328 (440)
T ss_dssp             GHHHHHHH-CCSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSH
T ss_pred             HHHHHHhh-cCCCEEeCcccCCHHHHHHHHHcCCccceeechhhhCCH
Confidence            55666654 5899999999999999999998 6799988765444443

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=96.50  E-value=0.025  Score=52.79  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +++.-.+.+++|++++ ++++.|...-+|+..+ ..   + +++.+++.|+.+|.        +.        +++-+++
T Consensus       175 ~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~-A~---~-~~~~L~~~~i~~iE--------qP--------~~~~d~~  233 (385)
T 3i6e_A          175 DHAFDIMRLELIARDFPEFRVRVDYNQGLEIDE-AV---P-RVLDVAQFQPDFIE--------QP--------VRAHHFE  233 (385)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HH---H-HHHHHHTTCCSCEE--------CC--------SCTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHH-HH---H-HHHHHHhcCCCEEE--------CC--------CCcccHH
Confidence            3455566677777765 6678888877886422 22   2 34566777877773        11        1222477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAA  145 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRga  145 (282)
                      ...++.+. .++||.+...+.|++|+.++++ ..||.|++--+-
T Consensus       234 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~  276 (385)
T 3i6e_A          234 LMARLRGL-TDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMK  276 (385)
T ss_dssp             HHHHHHTT-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred             HHHHHHHh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccc
Confidence            77777664 5899999999999999999998 779998875433

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=96.48  E-value=0.0052  Score=54.95  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CHHHHHHHHHHHhhc-CCccEEEEec------------------CCCCC----CCcHHHHHHHHHHHHHhCCCCEEEEe-
Q 023442           24 DPKFVGEAMSVIAAN-TNVPVSVKCR------------------IGVDD----HDSYNQLCDFIYKVSSLSPTRHFIIH-   79 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~-~~ipvsvKiR------------------~G~d~----~~~~~e~~~~v~~~le~~Gv~~i~VH-   79 (282)
                      +.+.+.++++++++. +++|+.+-.-                  .|.|.    +...++..+ +.+.+++.|++.+.+- 
T Consensus        78 ~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~-~~~~~~~~gl~~i~lia  156 (267)
T 3vnd_A           78 TSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAP-FSKAAKAHGIAPIFIAP  156 (267)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHH-HHHHHHHTTCEEECEEC
T ss_pred             CHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHH-HHHHHHHcCCeEEEEEC
Confidence            455677889999887 7889877532                  12221    012233222 3446678898877442 


Q ss_pred             cCCc------------------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           80 SRKA------------------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        80 ~Rt~------------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +.|.                  ...|..+... .+++.-.+.+.++++ ..++||+..|||.|++++.+.+..|||||.+
T Consensus       157 P~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~-~~~~~~~~~v~~vr~-~~~~pv~vGfGI~~~e~~~~~~~~gADgvVV  234 (267)
T 3vnd_A          157 PNADADTLKMVSEQGEGYTYLLSRAGVTGTES-KAGEPIENILTQLAE-FNAPPPLLGFGIAEPEQVRAAIKAGAAGAIS  234 (267)
T ss_dssp             TTCCHHHHHHHHHHCCSCEEESCCCCCC---------CHHHHHHHHHT-TTCCCEEECSSCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEecCCCCCCcc-CCcHHHHHHHHHHHH-hcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence            2220                  0122211111 122223456666654 4689999999999999999888889999999


Q ss_pred             cHHhh
Q 023442          142 GRAAY  146 (282)
Q Consensus       142 GRgal  146 (282)
                      |.++.
T Consensus       235 GSaiv  239 (267)
T 3vnd_A          235 GSAVV  239 (267)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98765

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.48  E-value=0.018  Score=53.70  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +++...+.++.+++.-.++|.+-+  |+.. + ..+.+    +.+.++|++.|.++.-    .|.+        +.-.+.
T Consensus        80 s~e~~~~~i~~vk~~~~l~vga~v--g~~~-~-~~~~~----~~lieaGvd~I~idta----~G~~--------~~~~~~  139 (366)
T 4fo4_A           80 SIEQQAAQVHQVKISGGLRVGAAV--GAAP-G-NEERV----KALVEAGVDVLLIDSS----HGHS--------EGVLQR  139 (366)
T ss_dssp             CHHHHHHHHHHHHTTTSCCCEEEC--CSCT-T-CHHHH----HHHHHTTCSEEEEECS----CTTS--------HHHHHH
T ss_pred             CHHHHHHHHHHHHhcCceeEEEEe--ccCh-h-HHHHH----HHHHhCCCCEEEEeCC----CCCC--------HHHHHH
Confidence            678888888888875334444433  3332 1 12222    3456899999998642    1211        101345


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.++++.++++||++ |.+.|+++++++.+.|+|+|.+|
T Consensus       140 I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          140 IRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             HHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence            667777777888876 78999999999999999999995

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=96.46  E-value=0.029  Score=53.81  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=79.0

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +.+.+.++++..++ .+..+.|-+.       +.+|+.    + +.++|++.|-+..|.-  ...         .++++.
T Consensus       142 ~~~~l~~l~~~a~~-lgm~~LvEvh-------~~eE~~----~-A~~lga~iIGinnr~L--~t~---------~~dl~~  197 (452)
T 1pii_A          142 DDDQYRQLAAVAHS-LEMGVLTEVS-------NEEEQE----R-AIALGAKVVGINNRDL--RDL---------SIDLNR  197 (452)
T ss_dssp             CHHHHHHHHHHHHH-TTCEEEEEEC-------SHHHHH----H-HHHTTCSEEEEESEET--TTT---------EECTHH
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeC-------CHHHHH----H-HHHCCCCEEEEeCCCC--CCC---------CCCHHH
Confidence            34567777777665 4777766553       334432    2 2468999999988742  222         123566


Q ss_pred             HHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccchhhhHhhhhC
Q 023442          104 YYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYTLGHVDTAIYG  162 (282)
Q Consensus       104 i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if~~~~~~~~~g  162 (282)
                      ..+++...+ ++++|+-|||.|++|+.++.+. +|+|.||.+++..+.+ ...++....|
T Consensus       198 ~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~-~~~~~~l~~~  255 (452)
T 1pii_A          198 TRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDL-HAAVRRVLLG  255 (452)
T ss_dssp             HHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCH-HHHHHHHHHC
T ss_pred             HHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCH-HHHHHHHHHH
Confidence            666665544 6899999999999999999999 9999999999999886 4545544444

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=96.43  E-value=0.022  Score=53.32  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.|+..-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-++
T Consensus       201 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------qP--------~~~~d~  259 (390)
T 3ugv_A          201 DPAVDIETAEAVWDAVGRDTALMVDFNQGLDM----AEAMH-RTRQIDDLGLEWIE--------EP--------VVYDNF  259 (390)
T ss_dssp             SHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH----HHHHH-HHHHHTTSCCSEEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHHhhCCCEEE--------CC--------CCcccH
Confidence            4566667788888776  57888888777753    23233 34567778887774        11        122246


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||.+.+.+.|++|+.++++ ..+|.|++-
T Consensus       260 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik  300 (390)
T 3ugv_A          260 DGYAQLRHD-LKTPLMIGENFYGPREMHQALQAGACDLVMPD  300 (390)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred             HHHHHHHHh-cCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            777777665 5899999999999999999998 668987654

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=96.43  E-value=0.0057  Score=54.43  Aligned_cols=46  Identities=24%  Similarity=0.269  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+.++.+ ..++||+..|||.|++++.+++..|||+|++|.++..
T Consensus       194 ~~~i~~lr~-~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~  239 (268)
T 1qop_A          194 HHLIEKLKE-YHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK  239 (268)
T ss_dssp             HHHHHHHHH-TTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHHh-ccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            567777765 4589999999999999999988889999999988754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.43  E-value=0.0027  Score=61.26  Aligned_cols=42  Identities=24%  Similarity=0.314  Sum_probs=36.2

Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+++++ .++|||+.|||.+..|+.+++..|||+||+|+.++.
T Consensus       321 ~~~~~~-~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~  362 (486)
T 2cu0_A          321 ADRAQE-YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG  362 (486)
T ss_dssp             HHHHHH-HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred             HHHHHH-cCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence            344443 379999999999999999999999999999998875

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=96.41  E-value=0.0085  Score=56.90  Aligned_cols=99  Identities=5%  Similarity=-0.084  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +...+++++||+++  ++++.|...-||+.    .+..+ +++.+++.|+++|.-        -.        ++-+++.
T Consensus       211 ~~d~e~v~avR~a~G~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEq--------P~--------~~~d~~~  269 (425)
T 3vcn_A          211 NSVPKLFERAREVLGWDVHLLHDVHHRLTP----IEAAR-LGKDLEPYRLFWLED--------SV--------PAENQAG  269 (425)
T ss_dssp             TTTHHHHHHHHHHHCSSSEEEEECTTCCCH----HHHHH-HHHHHGGGCCSEEEC--------CS--------CCSSTTH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEEC--------CC--------ChhhHHH
Confidence            34567888999887  68999998888864    33333 456788999998851        11        1112455


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      ..++.+. .++||++.+.+.|+++++++++ ..||.|++--+-.
T Consensus       270 ~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~  312 (425)
T 3vcn_A          270 FRLIRQH-TTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHA  312 (425)
T ss_dssp             HHHHHHH-CCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTT
T ss_pred             HHHHHhc-CCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhc
Confidence            5666664 5899999999999999999999 6699887754333

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=96.41  E-value=0.017  Score=53.69  Aligned_cols=97  Identities=5%  Similarity=0.061  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.|...-||+.    .+..+ +++.+++.|+.+|.        +.        +++-++
T Consensus       166 ~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------qP--------~~~~~~  224 (368)
T 3q45_A          166 SKELDVERIRMIREAAGDSITLRIDANQGWSV----ETAIE-TLTLLEPYNIQHCE--------EP--------VSRNLY  224 (368)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCH----HHHHH-HHHHHGGGCCSCEE--------CC--------BCGGGG
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCh----HHHHH-HHHHHhhcCCCEEE--------CC--------CChhHH
Confidence            4555666777777765  56777777767753    23222 34566777777774        11        112234


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +...++.+. .++||.+.+.+.|++|+.++++ ..+|.|++-
T Consensus       225 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k  265 (368)
T 3q45_A          225 TALPKIRQA-CRIPIMADESCCNSFDAERLIQIQACDSFNLK  265 (368)
T ss_dssp             GGHHHHHHT-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHHhh-CCCCEEEcCCcCCHHHHHHHHHcCCCCeEEec
Confidence            555566654 5899999999999999999998 679998874

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=96.40  E-value=0.01  Score=52.04  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .++|+|.|-+.+-..  .|            ..+++++++.-++++|++..||| |++.+.+.++.|+.++.+|. .+.+
T Consensus       144 ~~~Gad~vK~FPa~~--~g------------G~~~lkal~~p~p~ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs-~l~~  207 (232)
T 4e38_A          144 LEMGLTTLKFFPAEA--SG------------GISMVKSLVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVLACGGT-WMVD  207 (232)
T ss_dssp             HHTTCCEEEECSTTT--TT------------HHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEEC-GGGC
T ss_pred             HHcCCCEEEECcCcc--cc------------CHHHHHHHHHHhcCCCeeeEcCC-CHHHHHHHHHCCCeEEEECc-hhcC
Confidence            579999998866321  11            15778788776779999999999 58999999999999888774 4455


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      |.+
T Consensus       208 ~~~  210 (232)
T 4e38_A          208 KKL  210 (232)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=96.40  E-value=0.016  Score=53.69  Aligned_cols=94  Identities=10%  Similarity=0.042  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           27 FVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        27 ~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      .-.+.+++|++++  ++++.++..-||+.    .+..+ +++.+++.|+++|.        +        .+++-+++..
T Consensus       170 ~d~~~v~avR~a~g~~~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------q--------P~~~~d~~~~  228 (367)
T 3dg3_A          170 LDTAVVRALRERFGDAIELYVDGNRGWSA----AESLR-AMREMADLDLLFAE--------E--------LCPADDVLSR  228 (367)
T ss_dssp             HHHHHHHHHHHHHGGGSEEEEECTTCSCH----HHHHH-HHHHTTTSCCSCEE--------S--------CSCTTSHHHH
T ss_pred             hHHHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHHHhCCCEEE--------C--------CCCcccHHHH
Confidence            3345566666655  46677776666653    22222 34556666766664        1        1122236666


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      .++.+. .++||.+.+.+.|++++.++++ ..+|.|++=
T Consensus       229 ~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k  266 (367)
T 3dg3_A          229 RRLVGQ-LDMPFIADESVPTPADVTREVLGGSATAISIK  266 (367)
T ss_dssp             HHHHHH-CSSCEEECTTCSSHHHHHHHHHHTSCSEEEEC
T ss_pred             HHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEee
Confidence            677665 5899999999999999999998 669988773

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=96.39  E-value=0.016  Score=53.50  Aligned_cols=93  Identities=11%  Similarity=0.009  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +...+++++|++++  ++++.+...-||+..+     .++ ++.+++.|+++|.        +        .+++-+++.
T Consensus       167 ~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-----~~~-~~~l~~~~i~~iE--------~--------P~~~~~~~~  224 (368)
T 1sjd_A          167 GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-----APQ-LARLDPFGLLLIE--------Q--------PLEEEDVLG  224 (368)
T ss_dssp             TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-----HHH-HHTTGGGCCSEEE--------C--------CSCTTCHHH
T ss_pred             hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-----HHH-HHHHHhcCCCeEe--------C--------CCChhhHHH
Confidence            33446666666655  4666666666665422     222 3446677777653        1        122334777


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ..++.+. .++||.+.+.++|+++++++++ ..||.|++
T Consensus       225 ~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  262 (368)
T 1sjd_A          225 HAELARR-IQTPICLDESIVSARAAADAIKLGAVQIVNI  262 (368)
T ss_dssp             HHHHHTT-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHh-CCCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence            7777664 5899999999999999999998 66999988

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=96.38  E-value=0.08  Score=47.90  Aligned_cols=90  Identities=13%  Similarity=0.182  Sum_probs=55.8

Q ss_pred             CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEc
Q 023442           40 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLN  119 (282)
Q Consensus        40 ~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~n  119 (282)
                      ++|+.+=.-.|.....+ .+++...+++..+.|+|.|-+.-     .+              +.+.++++. ..+||++.
T Consensus       171 GlpvIie~~~G~~~~~d-~e~i~~aariA~elGAD~VKt~~-----t~--------------e~~~~vv~~-~~vPVv~~  229 (295)
T 3glc_A          171 GMPTMAVTGVGKDMVRD-QRYFSLATRIAAEMGAQIIKTYY-----VE--------------KGFERIVAG-CPVPIVIA  229 (295)
T ss_dssp             TCCEEEEECC----CCS-HHHHHHHHHHHHHTTCSEEEEEC-----CT--------------TTHHHHHHT-CSSCEEEE
T ss_pred             CCEEEEECCCCCccCCC-HHHHHHHHHHHHHhCCCEEEeCC-----CH--------------HHHHHHHHh-CCCcEEEE
Confidence            68877633222111111 23333456778899999887652     11              012345543 47999999


Q ss_pred             cCCC-CHHHHHHHH----HcCCCEEEecHHhhhCCc
Q 023442          120 GGIN-TVDEVNAAL----RKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       120 GdI~-s~eda~~~l----~~g~DgVmIGRgal~nP~  150 (282)
                      ||+. +.+++.+..    +.|++||.+||.++..|.
T Consensus       230 GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~d  265 (295)
T 3glc_A          230 GGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDH  265 (295)
T ss_dssp             CCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSS
T ss_pred             ECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcC
Confidence            9998 555555444    589999999999997665

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=96.34  E-value=0.0079  Score=57.14  Aligned_cols=95  Identities=5%  Similarity=-0.030  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      ++..+++++||+++  ++++.+...-||+.    .+..+ +++.+++.|+++|.-        ..        ++-+++.
T Consensus       212 ~~~~e~v~avR~a~G~d~~L~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEe--------P~--------~~~d~~~  270 (426)
T 4e4f_A          212 DFTPKLFEAVRDKFGFNEHLLHDMHHRLTP----IEAAR-FGKSVEDYRLFWMED--------PT--------PAENQAC  270 (426)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEECTTCSCH----HHHHH-HHHHTGGGCCSEEEC--------CS--------CCSSGGG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCCCCH----HHHHH-HHHHHhhcCCCEEEC--------CC--------ChHHHHH
Confidence            45678999999987  68999999888864    33333 456788999998851        11        1112444


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ..++.+. .++||.+.+.+.|+++++++++ ..||.|++-
T Consensus       271 ~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k  309 (426)
T 4e4f_A          271 FRLIRQH-TVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTT  309 (426)
T ss_dssp             GHHHHTT-CCSCEEECTTCCSGGGTHHHHHTTCCSEECCC
T ss_pred             HHHHHhc-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence            4566554 6899999999999999999998 668988754

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=96.33  E-value=0.023  Score=53.13  Aligned_cols=96  Identities=7%  Similarity=-0.007  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++.-.+.+++|++++  ++++.|...-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-++
T Consensus       195 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------eP--------~~~~d~  253 (383)
T 3toy_A          195 DLATDEAMIKGLRALLGPDIALMLDFNQSLDP----AEATR-RIARLADYDLTWIE--------EP--------VPQENL  253 (383)
T ss_dssp             CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCH----HHHHH-HHHHHHhhCCCEEE--------CC--------CCcchH
Confidence            4566667778887775  57788887777753    23223 34567778887774        11        122246


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+. .++||.+.+.+.|++|+.++++ ..+|.|++
T Consensus       254 ~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~i  293 (383)
T 3toy_A          254 SGHAAVRER-SEIPIQAGENWWFPRGFAEAIAAGASDFIMP  293 (383)
T ss_dssp             HHHHHHHHH-CSSCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHhh-cCCCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence            777777665 5899999999999999999998 66888754

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.32  E-value=0.022  Score=50.39  Aligned_cols=73  Identities=11%  Similarity=-0.044  Sum_probs=57.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.++++|+++|.|-.-...++|.            .+.+..+.+. .++||+.-+.|.+..++..+++.|||+|.++-
T Consensus        70 ~A~~~~~~GA~~isvlt~~~~f~G~------------~~~l~~i~~~-v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~  136 (254)
T 1vc4_A           70 AALAYARGGARAVSVLTEPHRFGGS------------LLDLKRVREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIV  136 (254)
T ss_dssp             HHHHHHHTTCSEEEEECCCSSSCCC------------HHHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred             HHHHHHHcCCCEEEEecchhhhccC------------HHHHHHHHHh-cCCCEEECCcCCCHHHHHHHHHcCCCEEEECc
Confidence            4566789999999985433344443            4556566554 58999999999999999998889999999999


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      .++. ..
T Consensus       137 ~~l~-~~  142 (254)
T 1vc4_A          137 ALLG-EL  142 (254)
T ss_dssp             HHHG-GG
T ss_pred             cchH-HH
Confidence            9988 44

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=96.30  E-value=0.023  Score=53.41  Aligned_cols=96  Identities=5%  Similarity=-0.010  Sum_probs=63.0

Q ss_pred             HHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           30 EAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        30 eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      +.+++|++++  ++++.|...-+|+..+ .    + +++.+++.|+.+|.        +        .+++-+++...++
T Consensus       193 ~~v~avR~a~G~~~~L~vDaN~~w~~~~-~----~-~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l  250 (400)
T 3mwc_A          193 EPLQETRRAVGDHFPLWTDANSSFELDQ-W----E-TFKAMDAAKCLFHE--------Q--------PLHYEALLDLKEL  250 (400)
T ss_dssp             HHHHHHHHHHCTTSCEEEECTTCCCGGG-H----H-HHHHHGGGCCSCEE--------S--------CSCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCCCHHH-H----H-HHHHHHhcCCCEEe--------C--------CCChhhHHHHHHH
Confidence            4455555554  4566666666665422 2    2 23455666666653        1        1223347777777


Q ss_pred             HhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhC
Q 023442          108 LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQN  148 (282)
Q Consensus       108 ~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~n  148 (282)
                      .+. .++||.+...+.|.+|+.++++ ..+|.|++--+-.+.
T Consensus       251 ~~~-~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GG  291 (400)
T 3mwc_A          251 GER-IETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGG  291 (400)
T ss_dssp             HHH-SSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTS
T ss_pred             Hhh-CCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCC
Confidence            765 5899999999999999999998 679999886555444

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=96.29  E-value=0.017  Score=53.54  Aligned_cols=90  Identities=8%  Similarity=0.003  Sum_probs=59.6

Q ss_pred             HHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           29 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        29 ~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      .+++++|++++ ++++.+...-+|+..+     .++ ++.+++.|+.+|.        +.        +++-+|+...++
T Consensus       177 ~~~v~avr~a~~~~~l~vDan~~~~~~~-----~~~-~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l  234 (375)
T 1r0m_A          177 VQPVRATREAFPDIRLTVDANSAYTLAD-----AGR-LRQLDEYDLTYIE--------QP--------LAWDDLVDHAEL  234 (375)
T ss_dssp             HHHHHHHHHHCTTSCEEEECTTCCCGGG-----HHH-HHTTGGGCCSCEE--------CC--------SCTTCSHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEeCCCCCCHHH-----HHH-HHHHHhCCCcEEE--------CC--------CCcccHHHHHHH
Confidence            34556665554 5667777666665422     222 3345666666663        11        122346666677


Q ss_pred             HhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          108 LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       108 ~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      .+. .++||.+.+.++|+++++++++ ..||.|++
T Consensus       235 ~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  268 (375)
T 1r0m_A          235 ARR-IRTPLCLDESVASASDARKALALGAGGVINL  268 (375)
T ss_dssp             HHH-CSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred             HHh-CCCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence            665 5899999999999999999998 67999988

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=96.26  E-value=0.016  Score=55.14  Aligned_cols=97  Identities=7%  Similarity=-0.035  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...+++++|++++  ++++.+...-||+.    ++..+ +++.+++.|+++|.        +.        +++-++
T Consensus       224 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~----~~a~~-~~~~l~~~~i~~iE--------qP--------~~~~d~  282 (441)
T 2hxt_A          224 NVQDDIRRCRLARAAIGPDIAMAVDANQRWDV----GPAID-WMRQLAEFDIAWIE--------EP--------TSPDDV  282 (441)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH----HHHHH-HHHTTGGGCCSCEE--------CC--------SCTTCH
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----HHHHH-HHHHHHhcCCCeee--------CC--------CCHHHH
Confidence            4666778888888876  57788777766753    33333 34556777877663        11        122236


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+....+||++.+.++|+++++++++ ..||.|++
T Consensus       283 ~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i  323 (441)
T 2hxt_A          283 LGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI  323 (441)
T ss_dssp             HHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECC
T ss_pred             HHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence            66667766432599999999999999999998 67998876

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=96.21  E-value=0.058  Score=48.85  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             cccccCC--HHH---HHHHHHHHhhcCCc-cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           18 GVSLMLD--PKF---VGEAMSVIAANTNV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        18 Gs~Ll~~--p~~---~~eiv~~v~~~~~i-pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      +..++++  ...   +.+-++++++...- ++.|=+       ++++++.+     +.++|+|.|-++.-+         
T Consensus       180 d~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev-------~tlee~~e-----A~~aGaD~I~ld~~~---------  238 (296)
T 1qap_A          180 DAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEV-------ENLDELDD-----ALKAGADIIMLDNFN---------  238 (296)
T ss_dssp             SCEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEE-------SSHHHHHH-----HHHTTCSEEEESSCC---------
T ss_pred             cEEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEe-------CCHHHHHH-----HHHcCCCEEEECCCC---------
Confidence            4445553  333   34566666665532 444422       23444322     236899999887521         


Q ss_pred             CcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           92 ENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                               .+.+.+.++.. .+++|.++||| |.+.+.++.++|+|++.+|.....-|++
T Consensus       239 ---------~e~l~~~v~~~~~~~~I~ASGGI-t~~~i~~~a~~GvD~isvGsli~~a~~~  289 (296)
T 1qap_A          239 ---------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHVRAL  289 (296)
T ss_dssp             ---------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEEECC
T ss_pred             ---------HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCCC
Confidence                     34455555433 36899999999 9999999999999999999866666654

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.18  E-value=0.0062  Score=54.55  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=59.3

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|+++|.|..-..+++|.            .+.+.++.+. +++||+..+-|.+..++..+.+.|||+|.++-
T Consensus        77 ~A~~y~~~GA~~isvltd~~~f~Gs------------~~~l~~ir~~-v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~  143 (272)
T 3qja_A           77 LAQAYQDGGARIVSVVTEQRRFQGS------------LDDLDAVRAS-VSIPVLRKDFVVQPYQIHEARAHGADMLLLIV  143 (272)
T ss_dssp             HHHHHHHTTCSEEEEECCGGGHHHH------------HHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEEEG
T ss_pred             HHHHHHHcCCCEEEEecChhhcCCC------------HHHHHHHHHh-CCCCEEECccccCHHHHHHHHHcCCCEEEEec
Confidence            4567789999999998755555553            4566666554 68999999989999999999999999999998


Q ss_pred             HhhhCCcc
Q 023442          144 AAYQNPWY  151 (282)
Q Consensus       144 gal~nP~i  151 (282)
                      +.+.+..+
T Consensus       144 a~l~~~~l  151 (272)
T 3qja_A          144 AALEQSVL  151 (272)
T ss_dssp             GGSCHHHH
T ss_pred             ccCCHHHH
Confidence            87765543

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=96.17  E-value=0.12  Score=44.79  Aligned_cols=106  Identities=11%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             HHHHHH---HHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC-CCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           28 VGEAMS---VIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP-TRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        28 ~~eiv~---~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G-v~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +.++++   .+++. +.-+.+-+..+... +.+       ..+ .+.| +|.+.+.+-...+.|.      ...|..++-
T Consensus       100 ~~~~i~~~~~i~~~-G~k~gvalnp~tp~-~~~-------~~~-l~~g~~D~VlvmsV~pGf~gq------~f~~~~l~k  163 (227)
T 1tqx_A          100 TERCIQLAKEIRDN-NLWCGISIKPKTDV-QKL-------VPI-LDTNLINTVLVMTVEPGFGGQ------SFMHDMMGK  163 (227)
T ss_dssp             HHHHHHHHHHHHTT-TCEEEEEECTTSCG-GGG-------HHH-HTTTCCSEEEEESSCTTCSSC------CCCGGGHHH
T ss_pred             HHHHHHHHHHHHHc-CCeEEEEeCCCCcH-HHH-------HHH-hhcCCcCEEEEeeeccCCCCc------ccchHHHHH
Confidence            445666   77664 55555544332211 111       122 2455 9999554432211221      112334666


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++++.+...+++|..-||| +.+.+.++.+.|+|.+.+|+++++.+.
T Consensus       164 i~~lr~~~~~~~I~VdGGI-~~~ti~~~~~aGAd~~V~GsaIf~~~d  209 (227)
T 1tqx_A          164 VSFLRKKYKNLNIQVDGGL-NIETTEISASHGANIIVAGTSIFNAED  209 (227)
T ss_dssp             HHHHHHHCTTCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHHTCSS
T ss_pred             HHHHHHhccCCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence            6666654447899999999 589999999999999999999987665

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=96.16  E-value=0.024  Score=52.34  Aligned_cols=90  Identities=8%  Similarity=0.003  Sum_probs=58.2

Q ss_pred             HHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           29 GEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        29 ~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      .+.+++|++++ ++++.+...-+|+..+     .+ +.+.+++.|+.+|.        +        .+++-+++...++
T Consensus       170 ~~~v~avr~a~~~~~l~vDan~~~~~~~-----~~-~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l  227 (369)
T 2zc8_A          170 YEVLKAVREAFPEATLTADANSAYSLAN-----LA-QLKRLDELRLDYIE--------Q--------PLAYDDLLDHAKL  227 (369)
T ss_dssp             HHHHHHHHHHCTTSCEEEECTTCCCGGG-----HH-HHHGGGGGCCSCEE--------C--------CSCTTCSHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEecCCCCCHHH-----HH-HHHHHHhCCCcEEE--------C--------CCCcccHHHHHHH
Confidence            34455555554 4566666666665422     22 23345666666664        1        1122346666677


Q ss_pred             HhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          108 LRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       108 ~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      .+. .++||.+.+.++|+++++++++ ..||.|++
T Consensus       228 ~~~-~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i  261 (369)
T 2zc8_A          228 QRE-LSTPICLDESLTGAEKARKAIELGAGRVFNV  261 (369)
T ss_dssp             HHH-CSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             Hhh-CCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence            665 5799999999999999999998 66998877

>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A

Probab=96.11  E-value=0.039  Score=51.72  Aligned_cols=96  Identities=9%  Similarity=0.045  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      |+...+.+++||+++  ++++.++..-+|+.    .+..+ +++.+++.|+.+|.        +.        +++-+++
T Consensus       182 ~~~~~~~v~avReavG~d~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------eP--------~~~~d~~  240 (388)
T 3tcs_A          182 PGRTEEIIPTMRRELGDDVDLLIDANSCYTP----DRAIE-VGHMLQDHGFCHFE--------EP--------CPYWELA  240 (388)
T ss_dssp             TTHHHHHHHHHHHHHCSSSEEEEECTTCCCH----HHHHH-HHHHHHHTTCCEEE--------CC--------SCTTCHH
T ss_pred             hhHHHHHHHHHHHHhCCCCeEEEeCCCCcCH----HHHHH-HHHHHhhcCCeEEE--------CC--------CCccCHH
Confidence            556677888888876  67888888888864    23233 45667888887773        11        1222467


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ...++.+. .++||.++..+.|.+++.++++ ..||.|.+-
T Consensus       241 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d  280 (388)
T 3tcs_A          241 QTKQVTDA-LDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPD  280 (388)
T ss_dssp             HHHHHHHH-CSSCEEECTTCCCHHHHHHHHHHTCCSEECCC
T ss_pred             HHHHHHHh-cCCCEEcCCccCCHHHHHHHHHcCCCCEEEeC
Confidence            77777765 5899999999999999999998 678988654

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=96.10  E-value=0.0085  Score=53.62  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .+.+.++++ ..++||+..|||.|++++.++  .|||||++|.++...
T Consensus       191 ~~~v~~vr~-~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~  235 (271)
T 1ujp_A          191 KDLVRRIKA-RTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRA  235 (271)
T ss_dssp             HHHHHHHHT-TCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred             HHHHHHHHh-hcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcc
Confidence            456666655 468999999999999999997  699999999887643

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.07  E-value=0.0094  Score=51.83  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal  146 (282)
                      +.+.|+|.|-+|+-. . .|            ..++++++....+++|+++.||| |++.+.++++. |+++|. |+++.
T Consensus       126 A~~~Gad~vk~Fpa~-~-~g------------G~~~lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~  189 (224)
T 1vhc_A          126 ALEMGISAVKFFPAE-A-SG------------GVKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFV  189 (224)
T ss_dssp             HHHTTCCEEEETTTT-T-TT------------HHHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGG
T ss_pred             HHHCCCCEEEEeeCc-c-cc------------CHHHHHHHHhhCCCCeEEEECCc-CHHHHHHHHhcCCCEEEE-Echhc
Confidence            357889988886611 0 00            14667777766668999999999 77999999995 999999 88776


Q ss_pred             hCCcc
Q 023442          147 QNPWY  151 (282)
Q Consensus       147 ~nP~i  151 (282)
                      ..+.+
T Consensus       190 ~~~~i  194 (224)
T 1vhc_A          190 EKKLI  194 (224)
T ss_dssp             CHHHH
T ss_pred             Ccchh
Confidence            66654

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=96.05  E-value=0.05  Score=50.75  Aligned_cols=100  Identities=11%  Similarity=-0.016  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++.-.+.+++|++++  ++++.|...-+|+.    .+..+ +++.+++.|+.+|.        +        .+++-+++
T Consensus       177 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------q--------P~~~~d~~  235 (382)
T 3dgb_A          177 VDRDLAHVIAIKKALGDSASVRVDVNQAWDE----AVALR-ACRILGGNGIDLIE--------Q--------PISRNNRA  235 (382)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEEECTTCBCH----HHHHH-HHHHHHTTTCCCEE--------C--------CBCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCH----HHHHH-HHHHHhhcCcCeee--------C--------CCCccCHH
Confidence            444455566666655  35666666666643    12222 34455666666552        1        12233477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      ...++.+. .++||.+...+.|.+|+.++++ ..||.|++--+-.
T Consensus       236 ~~~~l~~~-~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~  279 (382)
T 3dgb_A          236 GMVRLNAS-SPAPIMADESIECVEDAFNLAREGAASVFALKIAKN  279 (382)
T ss_dssp             HHHHHHHH-CSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred             HHHHHHHh-CCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeccccc
Confidence            77777765 5899999999999999999998 7799998764443

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=96.04  E-value=0.037  Score=48.12  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=41.9

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++.++++++...+++|..-||| +++.+.++.+.|||.+.+||++...+.
T Consensus       156 ~l~ki~~lr~~~~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~d  205 (228)
T 3ovp_A          156 MMPKVHWLRTQFPSLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIMRSED  205 (228)
T ss_dssp             GHHHHHHHHHHCTTCEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTCSC
T ss_pred             HHHHHHHHHHhcCCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence            35667777665567999999999 589999999999999999999887665

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.02  E-value=0.022  Score=51.01  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=57.7

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.++++|+++|.|-.-..+++|.            .+.+..+.+ .+++||+..+.|.++.++.++...|||+|.++-
T Consensus        84 ~A~~y~~~GA~~IsVltd~~~f~Gs------------~~~L~~ir~-~v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~  150 (272)
T 3tsm_A           84 LAKAYEEGGAACLSVLTDTPSFQGA------------PEFLTAARQ-ACSLPALRKDFLFDPYQVYEARSWGADCILIIM  150 (272)
T ss_dssp             HHHHHHHTTCSEEEEECCSTTTCCC------------HHHHHHHHH-TSSSCEEEESCCCSTHHHHHHHHTTCSEEEEET
T ss_pred             HHHHHHHCCCCEEEEeccccccCCC------------HHHHHHHHH-hcCCCEEECCccCCHHHHHHHHHcCCCEEEEcc
Confidence            4567789999999987644444453            566666655 468999999999999999999999999999998


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      .++.+..
T Consensus       151 a~L~~~~  157 (272)
T 3tsm_A          151 ASVDDDL  157 (272)
T ss_dssp             TTSCHHH
T ss_pred             cccCHHH
Confidence            8775444

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=96.01  E-value=0.089  Score=48.07  Aligned_cols=100  Identities=13%  Similarity=0.068  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC--EEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR--HFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~--~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +++...+++++|+++- ++++.+...-+|+.    ++..++ ++.+++.|++  +|.        +.        +++-+
T Consensus       165 ~~~~d~~~v~avr~~g~~~~l~vDan~~~~~----~~a~~~-~~~l~~~~i~~~~iE--------~P--------~~~~~  223 (345)
T 2zad_A          165 NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQ----KEAVEF-ARAVYQKGIDIAVYE--------QP--------VRRED  223 (345)
T ss_dssp             CHHHHHHHHHHHHHHSTTCEEEEECTTCSCH----HHHHHH-HHHHHHTTCCCSEEE--------CC--------SCTTC
T ss_pred             CHHHHHHHHHHHHhhCCCCeEEEECCCCCCH----HHHHHH-HHHHHhcCCCeeeee--------CC--------CCccc
Confidence            5666677788888762 36677766666642    343443 4567788888  663        11        12234


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe--cHHh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV--GRAA  145 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI--GRga  145 (282)
                      ++...++.+. .++||.+.+.+.|+++++++++ ..||.|++  +||-
T Consensus       224 ~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~GG  270 (345)
T 2zad_A          224 IEGLKFVRFH-SPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSG  270 (345)
T ss_dssp             HHHHHHHHHH-SSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHH
T ss_pred             HHHHHHHHHh-CCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccccc
Confidence            7777777665 4899999999999999999998 67999998  5544

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=95.96  E-value=0.062  Score=48.01  Aligned_cols=95  Identities=13%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             HHHHHHHhhcCC--ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH-HH
Q 023442           29 GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YY  105 (282)
Q Consensus        29 ~eiv~~v~~~~~--ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~-i~  105 (282)
                      .+-++++++...  .++.+=+       ++++++.+    . .++|+|.|-++.-+       +.        .... +.
T Consensus       169 ~~ai~~~r~~~~~~~~i~vev-------~tlee~~~----A-~~aGaD~I~ld~~~-------~~--------~l~~~v~  221 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEIEC-------ESFEEAKN----A-MNAGADIVMCDNLS-------VL--------ETKEIAA  221 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEEEE-------SSHHHHHH----H-HHHTCSEEEEETCC-------HH--------HHHHHHH
T ss_pred             HHHHHHHHHhCCCCceEEEEc-------CCHHHHHH----H-HHcCCCEEEECCCC-------HH--------HHHHHHH
Confidence            456667666653  3444422       23444322    2 35799999987521       11        1121 12


Q ss_pred             HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+...++++||.++||| |++.+.++.++|+|++.+|......|++
T Consensus       222 ~l~~~~~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~~~  266 (273)
T 2b7n_A          222 YRDAHYPFVLLEASGNI-SLESINAYAKSGVDAISVGALIHQATFI  266 (273)
T ss_dssp             HHHHHCTTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHHTCCCC
T ss_pred             HhhccCCCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCCCC
Confidence            22223567999999999 9999999999999999999988777775

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=95.95  E-value=0.007  Score=52.23  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~  147 (282)
                      .+.|+|.+-+|+-. . .|            ..++++++...++++|+++.||| |++.+.++++. |+++|. |+++..
T Consensus       126 ~~~Gad~v~~Fpa~-~-~g------------G~~~lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~~  189 (214)
T 1wbh_A          126 MDYGLKEFKFFPAE-A-NG------------GVKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLVP  189 (214)
T ss_dssp             HHTTCCEEEETTTT-T-TT------------HHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGSC
T ss_pred             HHCCCCEEEEecCc-c-cc------------CHHHHHHHhhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-eccccC
Confidence            46788888776511 0 00            14667777766668999999999 67999999995 999999 887766


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .+.+
T Consensus       190 ~~~~  193 (214)
T 1wbh_A          190 ADAL  193 (214)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            6654

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=95.93  E-value=0.08  Score=49.34  Aligned_cols=99  Identities=5%  Similarity=0.026  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHh--CCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL--SPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~--~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +++.-.+.+++|++++  ++++.+...-+|+.    .+..+ +++.+++  .|+.+|.        +        .+++-
T Consensus       168 ~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~----~~A~~-~~~~l~~~~~~l~~iE--------e--------P~~~~  226 (379)
T 3r0u_A          168 DFNRDIQLLKALDNEFSKNIKFRFDANQGWNL----AQTKQ-FIEEINKYSLNVEIIE--------Q--------PVKYY  226 (379)
T ss_dssp             CHHHHHHHHHHHHHHCCTTSEEEEECTTCCCH----HHHHH-HHHHHHTSCCCEEEEE--------C--------CSCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCH----HHHHH-HHHHHhhcCCCcEEEE--------C--------CCCcc
Confidence            4556667777777776  46777777777753    22222 3456666  5555553        1        11222


Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHH
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRA  144 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRg  144 (282)
                      +++...++.+. .++||.++..+.|.+|+.++++ ..+|.|.+--+
T Consensus       227 d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~  271 (379)
T 3r0u_A          227 DIKAMAEITKF-SNIPVVADESVFDAKDAERVIDEQACNMINIKLA  271 (379)
T ss_dssp             CHHHHHHHHHH-CSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHH
T ss_pred             cHHHHHHHHhc-CCCCEEeCCccCCHHHHHHHHHcCCCCEEEECcc
Confidence            46777777765 5799999999999999999999 56898877533

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=95.89  E-value=0.0079  Score=67.23  Aligned_cols=79  Identities=9%  Similarity=0.065  Sum_probs=54.0

Q ss_pred             HHhCCCCEEE---EecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHH-----------H
Q 023442           68 SSLSPTRHFI---IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAAL-----------R  133 (282)
Q Consensus        68 le~~Gv~~i~---VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l-----------~  133 (282)
                      +.++|+|.|+   +-|...  .|..+.  ..+...-...+.++++ ..++|||+.|||.|.+|+.+++           .
T Consensus       712 l~~aG~D~iV~~q~~G~ea--GGH~g~--~d~~~~~l~lv~~i~~-~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~pa  786 (2060)
T 2uva_G          712 IAKANPTFPIILQWTGGRG--GGHHSF--EDFHQPILLMYSRIRK-CSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPP  786 (2060)
T ss_dssp             HHHHCTTSCEEEEECCTTS--SSSCCS--CCSHHHHHHHHHHHHT-STTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCC
T ss_pred             HHHcCCCEEEEeeeEcccC--CCCCCc--ccccchHHHHHHHHHH-HcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCC
Confidence            3578999888   554321  222110  0010111445566655 4589999999999999999999           7


Q ss_pred             cCCCEEEecHHhhhCCcc
Q 023442          134 KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       134 ~g~DgVmIGRgal~nP~i  151 (282)
                      .|||||++|+.++.-..-
T Consensus       787 lGAdgV~~GT~f~~t~Ea  804 (2060)
T 2uva_G          787 MPFDGCMFGSRMMTAKEA  804 (2060)
T ss_dssp             CCCSCEEESGGGGGBTTS
T ss_pred             CCCCEEEEchhhhcCcCC
Confidence            899999999999876543

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.85  E-value=0.014  Score=56.39  Aligned_cols=63  Identities=24%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.++|++.|.++...    |.+        +.-++.+.++++.++++||++ |++.|.++++.+.+.|||+|.+|
T Consensus       236 ~l~~aG~d~I~id~a~----g~~--------~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg  298 (490)
T 4avf_A          236 ALVAAGVDVVVVDTAH----GHS--------KGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVKVG  298 (490)
T ss_dssp             HHHHTTCSEEEEECSC----CSB--------HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHhhcccceEEecccC----Ccc--------hhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence            4457899999998643    211        112566778877777899987 88999999999999999999985

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=95.83  E-value=0.02  Score=48.71  Aligned_cols=38  Identities=16%  Similarity=0.395  Sum_probs=34.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++||++.|||+ ++++.++++.|+|+|.+||+++..+..
T Consensus       170 ~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~  207 (220)
T 2fli_A          170 SFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDL  207 (220)
T ss_dssp             CCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             CceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence            68999999998 899999888999999999999887663

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=95.81  E-value=0.043  Score=51.70  Aligned_cols=97  Identities=11%  Similarity=-0.047  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++...+.+++|++++  ++++.|...-+|+.    ++..+ +++.+++.|+++|.--        .       +++-+++
T Consensus       196 ~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEqP--------~-------~~~~~~~  255 (410)
T 3dip_A          196 LKDGLEPFRKIRAAVGQRIEIMCELHSLWGT----HAAAR-ICNALADYGVLWVEDP--------I-------AKMDNIP  255 (410)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEEECTTCBCH----HHHHH-HHHHGGGGTCSEEECC--------B-------SCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEECCCCCCH----HHHHH-HHHHHHhcCCCEEECC--------C-------CCcccHH
Confidence            456778899999987  57888888777754    33333 4567888899888510        0       0112356


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ...++.+. .++||.+.+.+.|+++++++++ ..+|.|.+=
T Consensus       256 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  295 (410)
T 3dip_A          256 AVADLRRQ-TRAPICGGENLAGTRRFHEMLCADAIDFVMLD  295 (410)
T ss_dssp             HHHHHHHH-HCCCEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHHhh-CCCCEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence            66666664 5899999999999999999999 568988763

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=95.81  E-value=0.073  Score=49.73  Aligned_cols=104  Identities=8%  Similarity=0.002  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHhhcC--CccEE-EEecCCCCCCCcHHHHHHHHHHHHHhCCC--CEEEEecCCcccCCCCcCCcCCCCC
Q 023442           24 DPKFVGEAMSVIAANT--NVPVS-VKCRIGVDDHDSYNQLCDFIYKVSSLSPT--RHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvs-vKiR~G~d~~~~~~e~~~~v~~~le~~Gv--~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      +++.-.+.+++|++++  ++++. +...-+|+.    ++..+ +++.+++.|+  .+|.        +.        +++
T Consensus       168 ~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~----~~A~~-~~~~l~~~~i~~~~iE--------qP--------~~~  226 (391)
T 3gd6_A          168 NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNW----KDAHR-AIKRLTKYDLGLEMIE--------SP--------APR  226 (391)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCH----HHHHH-HHHHHTTCCSSCCEEE--------CC--------SCT
T ss_pred             CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCH----HHHHH-HHHHHHhcCCCcceec--------CC--------CCh
Confidence            6777788888888876  57888 888878853    23333 4567788888  7774        11        112


Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      -+++...++.+. .++||  .+.+.|+++++++++ ..||.|++--+-.+...-
T Consensus       227 ~d~~~~~~l~~~-~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~  277 (391)
T 3gd6_A          227 NDFDGLYQLRLK-TDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTS  277 (391)
T ss_dssp             TCHHHHHHHHHH-CSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred             hhHHHHHHHHHH-cCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHH
Confidence            237777777765 57999  889999999999998 779999998777766553

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.0069  Score=53.82  Aligned_cols=74  Identities=15%  Similarity=0.049  Sum_probs=57.7

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.+++--=+    +           .+.+.+.+++++ ..+||...|||++. |+++++ .|||-|.+|.
T Consensus        43 ~A~~~~~~Ga~~l~vvDL~----~-----------~n~~~i~~i~~~-~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs  104 (260)
T 2agk_A           43 YAKLYKDRDVQGCHVIKLG----P-----------NNDDAAREALQE-SPQFLQVGGGINDT-NCLEWL-KWASKVIVTS  104 (260)
T ss_dssp             HHHHHHHTTCTTCEEEEES----S-----------SCHHHHHHHHHH-STTTSEEESSCCTT-THHHHT-TTCSCEEECG
T ss_pred             HHHHHHHcCCCEEEEEeCC----C-----------CCHHHHHHHHhc-CCceEEEeCCCCHH-HHHHHh-cCCCEEEECc
Confidence            3556788999988773211    1           126777788776 47999999999987 999999 9999999999


Q ss_pred             HhhhC-----Cccchhhh
Q 023442          144 AAYQN-----PWYTLGHV  156 (282)
Q Consensus       144 gal~n-----P~if~~~~  156 (282)
                      .++.|     |.++ .++
T Consensus       105 ~a~~~~g~~~p~~~-~~~  121 (260)
T 2agk_A          105 WLFTKEGHFQLKRL-ERL  121 (260)
T ss_dssp             GGBCTTCCBCHHHH-HHH
T ss_pred             HHHhhcCCCCHHHH-HHH
Confidence            99999     9874 444

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=95.74  E-value=0.13  Score=47.87  Aligned_cols=101  Identities=6%  Similarity=-0.098  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++.-.+.+++|++++  ++++.|...-+|+.    .+..+ +++.+++.|+.+|.        +        .+++-+++
T Consensus       176 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~-~~~~l~~~~i~~iE--------e--------P~~~~d~~  234 (381)
T 3fcp_A          176 LATDLRHTRAIVEALGDRASIRVDVNQAWDA----ATGAK-GCRELAAMGVDLIE--------Q--------PVSAHDNA  234 (381)
T ss_dssp             HHHHHHHHHHHHHHTCTTCEEEEECTTCBCH----HHHHH-HHHHHHHTTCSEEE--------C--------CBCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HHHHH-HHHHHhhcCcccee--------C--------CCCcccHH
Confidence            444455566666655  35566666555542    12222 23455566665552        1        12233477


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~  147 (282)
                      ...++.+. .++||.+...+.|..|+.++++ ..+|.|++--+-.+
T Consensus       235 ~~~~l~~~-~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~G  279 (381)
T 3fcp_A          235 ALVRLSQQ-IETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAG  279 (381)
T ss_dssp             HHHHHHHH-SSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred             HHHHHHHh-CCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccC
Confidence            77777765 5899999999999999999998 67999987544433

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=95.73  E-value=0.085  Score=46.15  Aligned_cols=105  Identities=13%  Similarity=0.064  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhcC---CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           27 FVGEAMSVIAANT---NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        27 ~~~eiv~~v~~~~---~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+.+-+.++++.+   +.|+  |+=+-.... +-+++. ...+++.++|+|+|-.+...   .+..++.        .+.
T Consensus       117 ~v~~ei~~v~~a~~~~g~~l--KvIlEt~~L-~~e~i~-~a~ria~eaGADfVKTsTG~---~~~~gAt--------~~d  181 (234)
T 1n7k_A          117 AVYREVSGIVKLAKSYGAVV--KVILEAPLW-DDKTLS-LLVDSSRRAGADIVKTSTGV---YTKGGDP--------VTV  181 (234)
T ss_dssp             HHHHHHHHHHHHHHHTTCEE--EEECCGGGS-CHHHHH-HHHHHHHHTTCSEEESCCSS---SCCCCSH--------HHH
T ss_pred             HHHHHHHHHHHHHhhcCCeE--EEEEeccCC-CHHHHH-HHHHHHHHhCCCEEEeCCCC---CCCCCCC--------HHH
Confidence            4555556666654   3555  542211111 123433 46778889999999665311   1101111        222


Q ss_pred             HHH--HHhcCCCceEEEccCCCCHHHHHHHHHcCCC--EEEecHHhhh
Q 023442          104 YYA--LLRDFPDLTFTLNGGINTVDEVNAALRKGAH--HVMVGRAAYQ  147 (282)
Q Consensus       104 i~~--l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D--gVmIGRgal~  147 (282)
                      +.-  +.+.. .+||-+.|||.|.+|+.++++.|++  |+..||.++.
T Consensus       182 v~l~~m~~~v-~v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  228 (234)
T 1n7k_A          182 FRLASLAKPL-GMGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVLE  228 (234)
T ss_dssp             HHHHHHHGGG-TCEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHH
T ss_pred             HHHHHHHHHH-CCCEEEecCCCCHHHHHHHHHcCccccchHHHHHHHH
Confidence            222  33322 3999999999999999999999999  8888887654

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=95.70  E-value=0.022  Score=48.94  Aligned_cols=38  Identities=21%  Similarity=0.480  Sum_probs=34.0

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++|+++-|||+ ++.+.++++.|+|+|.+|+++...+..
T Consensus       179 ~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp  216 (230)
T 1rpx_A          179 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDY  216 (230)
T ss_dssp             CCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             CceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCH
Confidence            78999999997 899988888999999999999887663

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=95.65  E-value=0.018  Score=51.06  Aligned_cols=45  Identities=16%  Similarity=0.078  Sum_probs=37.2

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      +.+.++.+. .++||+..|||.|++++.+ +..|||+|++|+++...
T Consensus       196 ~~v~~vr~~-~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~  240 (262)
T 2ekc_A          196 KKVEEYREL-CDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKL  240 (262)
T ss_dssp             HHHHHHHHH-CCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHH
T ss_pred             HHHHHHHhh-cCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhh
Confidence            456666554 4899999999999999999 56689999999998754

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=95.64  E-value=0.018  Score=50.03  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             CCccHHHHHHHHhcC----CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           97 PPLKYEYYYALLRDF----PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~----~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+...+.++++.+..    .++||.+-|||+. +.+.++.+.|||+|.+|++++..|..
T Consensus       153 ~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d~  210 (230)
T 1tqj_A          153 IPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPNY  210 (230)
T ss_dssp             CGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCCH
Confidence            344466665554432    2799999999976 99999999999999999999987774

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=95.61  E-value=0.054  Score=45.98  Aligned_cols=72  Identities=22%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEE
Q 023442           61 CDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHV  139 (282)
Q Consensus        61 ~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgV  139 (282)
                      +..++++..+.|++.+.+.+.+                  .+.+.++.+..+.-+++..|||..- .++.++++.|+|++
T Consensus       121 v~~~~~~a~~~G~~G~~~~~~~------------------~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~v  182 (208)
T 2czd_A          121 TDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYI  182 (208)
T ss_dssp             HHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEE
Confidence            3445666778888887655421                  1233344443333356799999752 27888888899999


Q ss_pred             EecHHhhhCCc
Q 023442          140 MVGRAAYQNPW  150 (282)
Q Consensus       140 mIGRgal~nP~  150 (282)
                      .+||+++..+.
T Consensus       183 vvGr~I~~a~d  193 (208)
T 2czd_A          183 IVGRAIYNAPN  193 (208)
T ss_dssp             EECHHHHTSSS
T ss_pred             EEChHHhcCCC
Confidence            99999987654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.55  E-value=0.018  Score=55.82  Aligned_cols=63  Identities=21%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.++|++.|.++...    |.+        +.-++.+.++++.++++||++ |++.+.++++.+.+.|||+|.+|
T Consensus       238 ~l~~aG~d~I~id~a~----g~~--------~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg  300 (496)
T 4fxs_A          238 ALVEAGVDVLLIDSSH----GHS--------EGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG  300 (496)
T ss_dssp             HHHHTTCSEEEEECSC----TTS--------HHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHhccCceEEecccc----ccc--------hHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence            3457899999998653    211        112566778877777899987 88999999999999999999986

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=95.51  E-value=0.0065  Score=52.90  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~i  151 (282)
                      .++++++...++++|+++.||| |++.+.++++ .|+++|. |+++...+.+
T Consensus       154 ~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~~i  203 (225)
T 1mxs_A          154 VAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDSSWI  203 (225)
T ss_dssp             HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred             HHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCchhh
Confidence            4667777666668999999999 7899999999 8999999 9877665554

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=95.49  E-value=0.017  Score=48.96  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             HHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          107 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       107 l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      ++++..++|||+.|.|.|.||+.+ ++.|||+|+-+.--|.+-
T Consensus       143 ~I~~v~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~~  184 (188)
T 1vkf_A          143 VARKIPGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWKM  184 (188)
T ss_dssp             HHTTSTTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHTC
T ss_pred             HHHHhcCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhCC
Confidence            334335789999999999999999 999999999997666543

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=95.49  E-value=0.043  Score=51.49  Aligned_cols=95  Identities=13%  Similarity=-0.069  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++.-.+.+++|++++  ++++.+...-+|+.    ++..+ +++.+++.|+++|.-=        .        ++-+++
T Consensus       193 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~-~~~~L~~~~i~~iEeP--------~--------~~~~~~  251 (400)
T 4dxk_A          193 LKSALEPFEKIRKAVGDKMDIMVEFHSMWQL----LPAMQ-IAKALTPYQTFWHEDP--------I--------KMDSLS  251 (400)
T ss_dssp             HHHHHHHHHHHHHHHGGGSEEEEECTTCBCH----HHHHH-HHHHTGGGCCSEEECC--------B--------CTTSGG
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEECCCCCCH----HHHHH-HHHHHhhcCCCEEEcC--------C--------CcccHH
Confidence            566778899999987  57888887777753    33333 4567888899888610        0        111244


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ...++.+. .++||.+.+.+.|+++++++++ ..+|.|.+
T Consensus       252 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~  290 (400)
T 4dxk_A          252 SLTRYAAV-SPAPISASETLGSRWAFRDLLETGAAGVVML  290 (400)
T ss_dssp             GHHHHHHH-CSSCEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHh-CCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence            44566554 5899999999999999999999 56898876

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=95.39  E-value=0.023  Score=51.07  Aligned_cols=109  Identities=10%  Similarity=0.093  Sum_probs=66.1

Q ss_pred             ccccccCCHH---HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           17 FGVSLMLDPK---FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        17 yGs~Ll~~p~---~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      +|..+-.+.+   .+.+-+++|+++++ ...+|+=+-.....+ ++......+++.++|+|+|-.+..... .|-+..  
T Consensus       129 ig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d-~e~i~~A~~ia~eaGADfVKTSTGf~~-~gAT~e--  203 (281)
T 2a4a_A          129 YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKT-EDLIIKTTLAVLNGNADFIKTSTGKVQ-INATPS--  203 (281)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCS-HHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCHH--
T ss_pred             hHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCc-HHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHH--
Confidence            4554555677   88888899998874 245565332111011 232334567888999999976532110 121111  


Q ss_pred             CCCCCccHHHHHHHHhc--------CCCceEEEccCCCCHHHHHHHHHcCC
Q 023442           94 RTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVNAALRKGA  136 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~--------~~~ipVi~nGdI~s~eda~~~l~~g~  136 (282)
                            .-..+.+.+++        ...++|-++|||.|.+|+.++++.|+
T Consensus       204 ------dv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga  248 (281)
T 2a4a_A          204 ------SVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLAR  248 (281)
T ss_dssp             ------HHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhh
Confidence                  13334455432        24799999999999999999998543

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=95.31  E-value=0.037  Score=54.17  Aligned_cols=79  Identities=13%  Similarity=-0.019  Sum_probs=53.0

Q ss_pred             HHhCC---CCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-----CCCceEEEccCCCCHHHHHHHHH------
Q 023442           68 SSLSP---TRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-----FPDLTFTLNGGINTVDEVNAALR------  133 (282)
Q Consensus        68 le~~G---v~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-----~~~ipVi~nGdI~s~eda~~~l~------  133 (282)
                      +.+.|   +|+|.+.+=.....    ......+++.++.+.++.+.     ..++||++-||| +++++.++++      
T Consensus       124 A~~~G~~~aDYv~~Gpvf~T~t----K~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~g  198 (540)
T 3nl6_A          124 LSKMGPDMVDYIGVGTLFPTLT----KKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSSN  198 (540)
T ss_dssp             HHHTCC--CCEEEESCCSCCCC----CC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCTT
T ss_pred             HHHcCCCCCCEEEEcCCCCCCC----CCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhcccc
Confidence            45678   89988843111000    01000034456766666543     147999999999 8999999997      


Q ss_pred             --cCCCEEEecHHhhhCCcc
Q 023442          134 --KGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~i  151 (282)
                        .|+|||.++++++..+..
T Consensus       199 ~~~GadgvAVvsaI~~a~dp  218 (540)
T 3nl6_A          199 GKRSLDGICVVSDIIASLDA  218 (540)
T ss_dssp             SSCBCSCEEESHHHHTCTTH
T ss_pred             cccCceEEEEeHHHhcCCCH
Confidence              689999999999986664

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.27  E-value=0.026  Score=54.65  Aligned_cols=64  Identities=16%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .+.++|++.|.+|.--    |..        ...++.+.++++..+++||++ |+|.|.++++.+.+.|+|+|.+|-
T Consensus       262 ~~~~aG~d~v~i~~~~----G~~--------~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGad~I~vg~  325 (514)
T 1jcn_A          262 LLTQAGVDVIVLDSSQ----GNS--------VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGVDGLRVGM  325 (514)
T ss_dssp             HHHHTTCSEEEECCSC----CCS--------HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHcCCCEEEeeccC----Ccc--------hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCCCEEEECC
Confidence            4567999999998732    221        112577777777666899976 789999999999999999998854

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=95.18  E-value=0.18  Score=43.77  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=68.3

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-----ccCCCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----LLNGISPA   91 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-----~~~G~~~a   91 (282)
                      +|..+-.+.+.+.+-++++++.++- ..+|+=+-.... +-+++. .+.+++.++|+|+|-.+....     ...|..  
T Consensus        89 ig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~L-t~eei~-~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~--  163 (226)
T 1vcv_A           89 IGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYL-RDEERY-TLYDIIAEAGAHFIKSSTGFAEEAYAARQGNP--  163 (226)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGC-CHHHHH-HHHHHHHHHTCSEEECCCSCCCHHHHHHTTCC--
T ss_pred             hhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCC-CHHHHH-HHHHHHHHcCCCEEEeCCCCCccccccccCCC--
Confidence            4655567888899999999988742 255632211111 223433 456788899999997663211     000100  


Q ss_pred             CcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHc---CCC
Q 023442           92 ENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRK---GAH  137 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~---g~D  137 (282)
                      .+.+..  .-..+++.++. ..+++|-++|||+|.+|+.++++.   |++
T Consensus       164 ~gAt~~--dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~  211 (226)
T 1vcv_A          164 VHSTPE--RAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED  211 (226)
T ss_dssp             SSCCHH--HHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred             CCCCHH--HHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence            000100  12334444333 246999999999999999999996   877

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.14  E-value=0.009  Score=51.28  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.+.++++.+++. ++.+.+.+ +|..   +.++..     .+.+.|++.+.+|. .+....|..      ..+..++.+
T Consensus        96 ~~~~~~~~~~~~~-g~~~~~d~-l~~~---T~~~~~-----~~~~~g~d~v~~~~~~~~~~~g~~------~~~~~l~~i  159 (218)
T 3jr2_A           96 ATIAACKKVADEL-NGEIQIEI-YGNW---TMQDAK-----AWVDLGITQAIYHRSRDAELAGIG------WTTDDLDKM  159 (218)
T ss_dssp             HHHHHHHHHHHHH-TCEEEEEC-CSSC---CHHHHH-----HHHHTTCCEEEEECCHHHHHHTCC------SCHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCccceee-eecC---CHHHHH-----HHHHcCccceeeeeccccccCCCc------CCHHHHHHH
Confidence            3456666666654 44443322 3332   222221     22456999887753 222112221      011123445


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +++..  +++||+.-||| +++.+.++++.|||+|.+||++...+
T Consensus       160 ~~~~~--~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a~  201 (218)
T 3jr2_A          160 RQLSA--LGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGAE  201 (218)
T ss_dssp             HHHHH--TTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHHH
T ss_pred             HHHhC--CCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCCC
Confidence            44443  48999999999 69999999989999999999876543

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=95.10  E-value=0.044  Score=49.70  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH-HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY-YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~-i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++|+|.|-++.-+       +.        .... +..+...++++||.++||| |.+.+.++.++|+|++.+|......
T Consensus       215 ~aGaD~I~ld~~~-------~~--------~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~a  278 (299)
T 2jbm_A          215 EAGADLVLLDNFK-------PE--------ELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPHIDVISMGMLTQAA  278 (299)
T ss_dssp             HTTCSEEEEESCC-------HH--------HHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTTCCEEECTHHHHSC
T ss_pred             HcCCCEEEECCCC-------HH--------HHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCCCCEEEEChhhcCC
Confidence            6899999987621       11        1111 1222223567999999999 9999999999999999999977666


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      |++
T Consensus       279 ~~~  281 (299)
T 2jbm_A          279 PAL  281 (299)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            775

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.08  E-value=0.024  Score=54.47  Aligned_cols=65  Identities=22%  Similarity=0.252  Sum_probs=49.9

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +.+.++|+|.|.+|+-    .|..        ...|+.+.++++..+++||+ .|+|.+.+++..+++.|+|+|.+|.
T Consensus       239 ~~l~~~G~d~ivi~~a----~g~~--------~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~  303 (491)
T 1zfj_A          239 EALFEAGADAIVIDTA----HGHS--------AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGI  303 (491)
T ss_dssp             HHHHHHTCSEEEECCS----CTTC--------HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHcCCCeEEEeee----cCcc--------hhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEECc
Confidence            3456789999999972    1211        11266677777766689998 8999999999999999999999884

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=95.01  E-value=0.26  Score=45.04  Aligned_cols=94  Identities=13%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             cCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE
Q 023442           38 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT  117 (282)
Q Consensus        38 ~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi  117 (282)
                      ..+.|+.+.+..|++.    ++    +.+.++.+|+++|.+|..... ...++........ -++.+.++.+. .++||+
T Consensus       114 ~~~~pv~~~i~~~~~~----~~----~~~~~~~~gad~i~i~~~~~~-~~~~~~~~~~~~~-~~~~i~~vr~~-~~~Pv~  182 (349)
T 1p0k_A          114 NPNGLIFANLGSEATA----AQ----AKEAVEMIGANALQIHLNVIQ-EIVMPEGDRSFSG-ALKRIEQICSR-VSVPVI  182 (349)
T ss_dssp             CSSSCEEEEEETTCCH----HH----HHHHHHHTTCSEEEEEECTTT-TC--------CTT-HHHHHHHHHHH-CSSCEE
T ss_pred             CCCceeEEeecCCCCH----HH----HHHHHHhcCCCeEEecccchh-hhcCCCCCcchHH-HHHHHHHHHHH-cCCCEE
Confidence            4578998887655542    22    234567889999999964321 1111111111100 14667777655 489998


Q ss_pred             Ec--cCCCCHHHHHHHHHcCCCEEEec
Q 023442          118 LN--GGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       118 ~n--GdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .-  |...+.++++.+.+.|+|+|.+.
T Consensus       183 vK~~~~~~~~~~a~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          183 VKEVGFGMSKASAGKLYEAGAAAVDIG  209 (349)
T ss_dssp             EEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             EEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence            75  55578999999888999999884

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=94.94  E-value=0.027  Score=50.08  Aligned_cols=118  Identities=13%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      +|..+-.+.+.+.+-+++|++.++ -+..+|+=+-.....+ ++......+++.++|+|+|-.+..... .|-++.    
T Consensus       108 ig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d-~e~i~~a~~ia~eaGADfVKTSTGf~~-~gAt~e----  181 (260)
T 1p1x_A          108 YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKD-EALIRKASEISIKAGADFIKTSTGKVA-VNATPE----  181 (260)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCS-HHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCHH----
T ss_pred             HHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCc-HHHHHHHHHHHHHhCCCEEEeCCCCCC-CCCCHH----
Confidence            465556678888888888888763 2345565331110011 242334567888999999976532110 111110    


Q ss_pred             CCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           96 IPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        96 i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                          ....+.+.+++   ...++|-++|||+|.+|+.++++.|+       -.|+..|+
T Consensus       182 ----~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga-------~~lG~~w~  229 (260)
T 1p1x_A          182 ----SARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIAD-------ELFGADWA  229 (260)
T ss_dssp             ----HHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHH-------HHHCTTSC
T ss_pred             ----HHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhh-------hhcccccc
Confidence                12234444442   24799999999999999999998543       35677776

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=94.94  E-value=0.061  Score=48.48  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             ccccccCCHHHH-----HHHHHHHhhcCC--ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCC
Q 023442           17 FGVSLMLDPKFV-----GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS   89 (282)
Q Consensus        17 yGs~Ll~~p~~~-----~eiv~~v~~~~~--ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~   89 (282)
                      +++.|+++....     .+-++.+++...  .++.|=+       ++.++..    + +.++|+|.|-++.-+.      
T Consensus       166 ~d~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev-------~t~eea~----e-A~~aGaD~I~ld~~~~------  227 (286)
T 1x1o_A          166 FDGILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEV-------RSLEELE----E-ALEAGADLILLDNFPL------  227 (286)
T ss_dssp             SSCEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEE-------SSHHHHH----H-HHHHTCSEEEEESCCH------
T ss_pred             ccceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEe-------CCHHHHH----H-HHHcCCCEEEECCCCH------
Confidence            345566665432     334556665542  3444422       2344432    2 2367999999987321      


Q ss_pred             cCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           90 PAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        90 ~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                                  +.+++.++.. .++|+++.||| |++.+.++.++|+|+|.+|.....-|++
T Consensus       228 ------------~~~k~av~~v~~~ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~~~a~~~  277 (286)
T 1x1o_A          228 ------------EALREAVRRVGGRVPLEASGNM-TLERAKAAAEAGVDYVSVGALTHSAKAL  277 (286)
T ss_dssp             ------------HHHHHHHHHHTTSSCEEEESSC-CHHHHHHHHHHTCSEEECTHHHHSCCCC
T ss_pred             ------------HHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHHcCCCce
Confidence                        1122222221 36899999999 7999999999999999999877766764

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=94.93  E-value=0.032  Score=49.42  Aligned_cols=43  Identities=21%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.++++ ..++||+..+||.|++++.++.+ +||||.+|.+++.
T Consensus       190 ~v~~vr~-~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk  232 (252)
T 3tha_A          190 KVKEIRS-FTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK  232 (252)
T ss_dssp             HHHHHHT-TCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred             HHHHHHH-hcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence            4455544 46899999999999999998876 6999999998863

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=94.91  E-value=0.039  Score=53.06  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ..+.++|++.|.+|.-.    |..        ...|+.+.++++..+++||+. |++.|.++++.+.+.|+|+|.+|
T Consensus       243 ~~l~~aGvd~v~i~~~~----G~~--------~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~  306 (494)
T 1vrd_A          243 EKLVKAGVDVIVIDTAH----GHS--------RRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVKVG  306 (494)
T ss_dssp             HHHHHTTCSEEEECCSC----CSS--------HHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHhCCCEEEEEecC----Cch--------HHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEEEc
Confidence            34568999999998632    221        112677878877766899876 78899999998888999999984

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=94.90  E-value=0.37  Score=44.41  Aligned_cols=102  Identities=17%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCC---CCcHHHH-------------------------HHHHHHHHHhCCCC
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDD---HDSYNQL-------------------------CDFIYKVSSLSPTR   74 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~---~~~~~e~-------------------------~~~v~~~le~~Gv~   74 (282)
                      ..++.+.+.++.+++.++.|+.|.+=.....   .....+.                         .....+++.+.|++
T Consensus        45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
T 3bw2_A           45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP  124 (369)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence            5788899999999988877887765321111   0000000                         01223456688999


Q ss_pred             EEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe-cHH
Q 023442           75 HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GRA  144 (282)
Q Consensus        75 ~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI-GRg  144 (282)
                      .+.+|....                ..+.+.++.+  .+++|+.  .+.|.+++..+.+.|+|+|.+ |+.
T Consensus       125 ~V~~~~g~~----------------~~~~i~~~~~--~g~~v~~--~v~t~~~a~~a~~~GaD~i~v~g~~  175 (369)
T 3bw2_A          125 VVSFHFGVP----------------DREVIARLRR--AGTLTLV--TATTPEEARAVEAAGADAVIAQGVE  175 (369)
T ss_dssp             EEEEESSCC----------------CHHHHHHHHH--TTCEEEE--EESSHHHHHHHHHTTCSEEEEECTT
T ss_pred             EEEEeCCCC----------------cHHHHHHHHH--CCCeEEE--ECCCHHHHHHHHHcCCCEEEEeCCC
Confidence            999997321                1455555554  3677775  588999998888899999999 753

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=94.81  E-value=0.19  Score=43.57  Aligned_cols=48  Identities=19%  Similarity=0.312  Sum_probs=40.0

Q ss_pred             HHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          103 YYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       103 ~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .+.++++.. .+++|++-|+|.+.+|+..+.+.|+||+.||.+++.-+.
T Consensus       165 ~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~  213 (225)
T 1hg3_A          165 NTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKD  213 (225)
T ss_dssp             HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSS
T ss_pred             HHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcC
Confidence            344444543 368999999999999999998899999999999998877

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=94.76  E-value=0.074  Score=47.89  Aligned_cols=106  Identities=11%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             cccccCCHHHH-----HHHHHHHhhcCC--ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCc
Q 023442           18 GVSLMLDPKFV-----GEAMSVIAANTN--VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP   90 (282)
Q Consensus        18 Gs~Ll~~p~~~-----~eiv~~v~~~~~--ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~   90 (282)
                      -+.|+++....     .+.++++++...  .++.|=++       +.++..+     +.++|+|.|-++.-+.       
T Consensus       164 d~vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~-------tleea~e-----A~~aGaD~I~LDn~~~-------  224 (285)
T 1o4u_A          164 GCVMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVE-------NLEDALR-----AVEAGADIVMLDNLSP-------  224 (285)
T ss_dssp             -CEEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEES-------SHHHHHH-----HHHTTCSEEEEESCCH-------
T ss_pred             ccEEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeC-------CHHHHHH-----HHHcCCCEEEECCCCH-------
Confidence            35567766543     345566665542  45555322       3444322     2468999999987321       


Q ss_pred             CCcCCCCCccHH-HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           91 AENRTIPPLKYE-YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        91 ad~~~i~~~~~~-~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .        ... .+..+....+++|+.++||| |++.+.++.++|+|+|.+|.....-|++
T Consensus       225 e--------~l~~av~~l~~~~~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~sa~~~  277 (285)
T 1o4u_A          225 E--------EVKDISRRIKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVFV  277 (285)
T ss_dssp             H--------HHHHHHHHHHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCCC
T ss_pred             H--------HHHHHHHHhhccCCCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCCc
Confidence            0        011 22223222457999999999 7899998888999999999887777764

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=94.59  E-value=0.054  Score=52.60  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+.++|++.|.+..-.    |.+ .       --++.+.++++.++++||++ |+|.|.++++.+.+.|+|+|.+|-|
T Consensus       263 aLveaGvd~I~Id~a~----g~~-~-------~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~aGad~i~vg~g  327 (511)
T 3usb_A          263 ALVKASVDAIVLDTAH----GHS-Q-------GVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIEAGANVVKVGIG  327 (511)
T ss_dssp             HHHHTTCSEEEEECSC----TTS-H-------HHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHhhccceEEecccc----cch-h-------hhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHHhCCCEEEECCC
Confidence            4557899999997532    110 0       01567778877777888874 7899999999999999999998543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=94.53  E-value=0.043  Score=53.54  Aligned_cols=66  Identities=17%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ..|.++|+|.|.|..-    .|.+..        -.+.+..+++.+++++|| .|+|-|.+.++.+++.|+|+|-+|-|
T Consensus       287 ~aLv~AGvD~iviD~a----hGhs~~--------v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~vkVGiG  352 (556)
T 4af0_A          287 KLLAEAGLDVVVLDSS----QGNSVY--------QIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGLRIGMG  352 (556)
T ss_dssp             HHHHHTTCCEEEECCS----CCCSHH--------HHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHhcCCcEEEEecc----ccccHH--------HHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEEeecCC
Confidence            3456899999999642    232210        156677777778888874 58899999999999999999998866

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=94.52  E-value=0.42  Score=43.24  Aligned_cols=97  Identities=15%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCC-CCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d-~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      ..++.+.+.++.+++.++.|+.|-+-.... ....+++.+    +.+.+.|++.|.+|...               |  +
T Consensus        50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~----~~~~~~g~d~V~~~~g~---------------p--~  108 (328)
T 2gjl_A           50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYR----AAIIEAGIRVVETAGND---------------P--G  108 (328)
T ss_dssp             SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHH----HHHHHTTCCEEEEEESC---------------C--H
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHH----HHHHhcCCCEEEEcCCC---------------c--H
Confidence            358888899999988777787765543200 012333333    34567999999999631               1  3


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe-cHH
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GRA  144 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI-GRg  144 (282)
                      +.+..+.+ . ++||+.  ++.|.+++..+.+.|+|+|.+ |+.
T Consensus       109 ~~~~~l~~-~-gi~vi~--~v~t~~~a~~~~~~GaD~i~v~g~~  148 (328)
T 2gjl_A          109 EHIAEFRR-H-GVKVIH--KCTAVRHALKAERLGVDAVSIDGFE  148 (328)
T ss_dssp             HHHHHHHH-T-TCEEEE--EESSHHHHHHHHHTTCSEEEEECTT
T ss_pred             HHHHHHHH-c-CCCEEe--eCCCHHHHHHHHHcCCCEEEEECCC
Confidence            44545544 3 788884  589999999888899999998 653

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=94.47  E-value=0.42  Score=41.64  Aligned_cols=89  Identities=20%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             HHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL  108 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~  108 (282)
                      .++++.+.+.   +|..=+|.  ++.+...+    +++.+.+.|+..|.|.-|+..               ..+.+++++
T Consensus        25 ~~~~~~l~~~---~vv~Vir~--~~~~~a~~----~a~al~~gGi~~iEvt~~t~~---------------a~e~I~~l~   80 (232)
T 4e38_A           25 STINNQLKAL---KVIPVIAI--DNAEDIIP----LGKVLAENGLPAAEITFRSDA---------------AVEAIRLLR   80 (232)
T ss_dssp             HHHHHHHHHH---CEEEEECC--SSGGGHHH----HHHHHHHTTCCEEEEETTSTT---------------HHHHHHHHH
T ss_pred             HHHHHHHHhC---CEEEEEEc--CCHHHHHH----HHHHHHHCCCCEEEEeCCCCC---------------HHHHHHHHH
Confidence            3455565553   34333563  33333333    345667899999999877521               156777787


Q ss_pred             hcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       109 ~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +++++ .+++-|-|.+.++++.+++.|||+|+..
T Consensus        81 ~~~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvsP  113 (232)
T 4e38_A           81 QAQPE-MLIGAGTILNGEQALAAKEAGATFVVSP  113 (232)
T ss_dssp             HHCTT-CEEEEECCCSHHHHHHHHHHTCSEEECS
T ss_pred             HhCCC-CEEeECCcCCHHHHHHHHHcCCCEEEeC
Confidence            77765 5889999999999999999999999875

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=94.31  E-value=0.23  Score=42.05  Aligned_cols=96  Identities=18%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCC-----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~-----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.++++++.+++|+...++..+.+.     ...++    +. .+.++|++.+++|.....    .|..      .-.+.+
T Consensus        46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~----i~-~~~~~Gad~v~l~~~~~~----~p~~------~~~~~i  110 (223)
T 1y0e_A           46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE----VD-ELIESQCEVIALDATLQQ----RPKE------TLDELV  110 (223)
T ss_dssp             HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHH----HH-HHHHHTCSEEEEECSCSC----CSSS------CHHHHH
T ss_pred             HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHH----HH-HHHhCCCCEEEEeeeccc----Cccc------CHHHHH
Confidence            3456666667889843233222110     12222    21 234789999999974311    0100      013455


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ..+.+.+++++++.  ++.|++++.++.+.|+|.|+++
T Consensus       111 ~~~~~~~~~~~v~~--~~~t~~e~~~~~~~G~d~i~~~  146 (223)
T 1y0e_A          111 SYIRTHAPNVEIMA--DIATVEEAKNAARLGFDYIGTT  146 (223)
T ss_dssp             HHHHHHCTTSEEEE--ECSSHHHHHHHHHTTCSEEECT
T ss_pred             HHHHHhCCCceEEe--cCCCHHHHHHHHHcCCCEEEeC
Confidence            56655555777765  6789999998878999999875

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=94.27  E-value=0.51  Score=43.68  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=35.3

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ...|+.+.++++. .++||+. +++.|+++++.+.+.|+|+|.++
T Consensus       211 ~~~~~~i~~l~~~-~~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs  253 (370)
T 1gox_A          211 SLSWKDVAWLQTI-TSLPILV-KGVITAEDARLAVQHGAAGIIVS  253 (370)
T ss_dssp             TCCHHHHHHHHHH-CCSCEEE-ECCCSHHHHHHHHHTTCSEEEEC
T ss_pred             cchHHHHHHHHHH-hCCCEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence            3457778788776 4899985 67799999999999999999984

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.25  E-value=0.068  Score=49.41  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           71 SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        71 ~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .|++.+.+|...    |. +       +.-|+.+.++++..+++||+. |+|.|+++++.+.+.|+|+|.++
T Consensus       131 ~g~~~i~i~~~~----g~-~-------~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          131 PQVKYICLDVAN----GY-S-------EHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELILSGADIIKVG  189 (351)
T ss_dssp             TTCCEEEEECSC----TT-B-------HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEEecC----CC-c-------HHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence            389999998631    21 1       112677878877666899874 77899999999999999999886

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=94.18  E-value=0.63  Score=42.70  Aligned_cols=87  Identities=17%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             HHHHHHHH--HhCCCCEEEEec-CCc-ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-EccCCCCHHHHHHHHH--
Q 023442           61 CDFIYKVS--SLSPTRHFIIHS-RKA-LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEVNAALR--  133 (282)
Q Consensus        61 ~~~v~~~l--e~~Gv~~i~VH~-Rt~-~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi-~nGdI~s~eda~~~l~--  133 (282)
                      +...++.+  .+.|+|.+-+-- .+. ...|.+..+.-+...-..+.+.++... ..+|+| .+||+ +.++..+.++  
T Consensus       190 V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a-~~~P~v~lsgG~-~~~~fl~~v~~A  267 (332)
T 3iv3_A          190 VNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAS-TDLPYIYLSAGV-SAELFQETLVFA  267 (332)
T ss_dssp             HHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHT-CSSCEEEECTTC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhc-CCCCEEEECCCC-CHHHHHHHHHHH
Confidence            44456777  567999998862 221 112321110000000012346666553 589965 79998 6777777774  


Q ss_pred             --cCC--CEEEecHHhhhCC
Q 023442          134 --KGA--HHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~--DgVmIGRgal~nP  149 (282)
                        .|+  .||.+||....+.
T Consensus       268 ~~aGa~f~Gv~~GRnvwq~~  287 (332)
T 3iv3_A          268 HKAGAKFNGVLCGRATWAGS  287 (332)
T ss_dssp             HHHTCCCCEEEECHHHHTTH
T ss_pred             HHcCCCcceEEeeHHHHHhh
Confidence              699  9999999987774

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=94.13  E-value=0.13  Score=47.94  Aligned_cols=95  Identities=6%  Similarity=-0.129  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH
Q 023442           24 DPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY  101 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~  101 (282)
                      +++...++++++++++  ++++.+...-+|+.    ++..++ ++.+++.|+++|.        +..        + -++
T Consensus       183 ~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~----~~ai~~-~~~l~~~~i~~iE--------~P~--------~-~d~  240 (392)
T 3p3b_A          183 GTKRDIAIVRGISEVAGPAGKIMIDANNAYNL----NLTKEV-LAALSDVNLYWLE--------EAF--------H-EDE  240 (392)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEECTTCCCH----HHHHHH-HHHTTTSCEEEEE--------CSS--------S-CCH
T ss_pred             cHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HHHHHH-HHHHHhcCCCEEe--------cCC--------c-ccH
Confidence            5677788999999876  57888877666743    344443 4567788877653        111        1 126


Q ss_pred             HHHHHHHhcC----CCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          102 EYYYALLRDF----PDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~----~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +...++.+..    .++||++.+ +.++++++++++ ..||.|.+
T Consensus       241 ~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i  284 (392)
T 3p3b_A          241 ALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY  284 (392)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred             HHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence            6666666541    579999999 999999999999 56898765

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=94.03  E-value=0.67  Score=40.09  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      ++..+++.+...-++-|||  +.--+++ ...+.+. .+++.++++|+..|.+.+                    .+.+.
T Consensus         6 ~~~~~~~~~~~~~~livsc--q~~~~~pl~~~~~~~-~~A~a~~~~Ga~~i~~~~--------------------~~~i~   62 (232)
T 3igs_A            6 LLEQLDKNIAASGGLIVSC--QPVPGSPLDKPEIVA-AMALAAEQAGAVAVRIEG--------------------IDNLR   62 (232)
T ss_dssp             HHHHHHHHHHHHCCEEEEC--CCCTTCTTCSHHHHH-HHHHHHHHTTCSEEEEES--------------------HHHHH
T ss_pred             HHHHHHHHhhhcCCEEEEE--eCCCCCCCCCcchHH-HHHHHHHHCCCeEEEECC--------------------HHHHH
Confidence            4556666663322455555  4322222 2233444 357788999999988721                    45566


Q ss_pred             HHHhcCCCceEEE-c----cC--C---CCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          106 ALLRDFPDLTFTL-N----GG--I---NTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       106 ~l~~~~~~ipVi~-n----Gd--I---~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++++ .+++||++ +    ||  +   .+.+++.++++.|+|.|.++-++..+|..
T Consensus        63 ~ir~-~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~  117 (232)
T 3igs_A           63 MTRS-LVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVA  117 (232)
T ss_dssp             HHHT-TCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSC
T ss_pred             HHHH-hcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHH
Confidence            6655 46899986 2    33  3   36778998888999999999888788964

>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A

Probab=94.02  E-value=0.36  Score=44.95  Aligned_cols=47  Identities=19%  Similarity=0.097  Sum_probs=37.4

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~  147 (282)
                      +++...++.+. .++||.+...+.|.+|+.++++ ..+|.|++--+-.+
T Consensus       231 ~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~G  278 (386)
T 3fv9_G          231 SWAETKSLRAR-CALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQG  278 (386)
T ss_dssp             SHHHHHHHHTT-CCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHT
T ss_pred             CHHHHHHHHhh-CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccC
Confidence            47777677664 5899999999999999999998 67999887544433

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=94.00  E-value=0.74  Score=41.78  Aligned_cols=93  Identities=19%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .+++.+.+.++.+++.++.|+.|.+=. ++.  ...+.+    +.+.+.|++.|.+|+..       |          .+
T Consensus        60 ~~~~~l~~~i~~i~~~~~~p~gVnl~~-~~~--~~~~~~----~~~~~~g~d~V~l~~g~-------p----------~~  115 (326)
T 3bo9_A           60 MKPDDLRKAISELRQKTDKPFGVNIIL-VSP--WADDLV----KVCIEEKVPVVTFGAGN-------P----------TK  115 (326)
T ss_dssp             CCHHHHHHHHHHHHTTCSSCEEEEEET-TST--THHHHH----HHHHHTTCSEEEEESSC-------C----------HH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEec-cCC--CHHHHH----HHHHHCCCCEEEECCCC-------c----------HH
Confidence            378889999999998878898887643 222  233333    34567999999998742       1          23


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe-cH
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR  143 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI-GR  143 (282)
                      .+..+.+  .+++|+.  .|.+.+++..+.+.|+|+|.+ |+
T Consensus       116 ~~~~l~~--~g~~v~~--~v~s~~~a~~a~~~GaD~i~v~g~  153 (326)
T 3bo9_A          116 YIRELKE--NGTKVIP--VVASDSLARMVERAGADAVIAEGM  153 (326)
T ss_dssp             HHHHHHH--TTCEEEE--EESSHHHHHHHHHTTCSCEEEECT
T ss_pred             HHHHHHH--cCCcEEE--EcCCHHHHHHHHHcCCCEEEEECC
Confidence            3444433  3678875  689999999988899999998 53

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=93.99  E-value=0.13  Score=44.78  Aligned_cols=46  Identities=30%  Similarity=0.455  Sum_probs=38.9

Q ss_pred             HHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++++.. .+++|++-|+|.+.+|+..+.+.|+||+.||.++|.-+.
T Consensus       164 ~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~  210 (226)
T 1w0m_A          164 VGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKD  210 (226)
T ss_dssp             HHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSS
T ss_pred             HHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcC
Confidence            3444443 368999999999999999998899999999999998777

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=93.95  E-value=0.14  Score=46.15  Aligned_cols=106  Identities=7%  Similarity=0.029  Sum_probs=63.2

Q ss_pred             cccccc---CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           17 FGVSLM---LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        17 yGs~Ll---~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      +|..+.   .+.+.+.+-|++|+++++ +..+|+=+--..-.+ ++....+.+++.++|+|+|--+.... ..|.+..  
T Consensus       123 ig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~-~e~i~~A~~ia~~AGADFVKTSTGf~-~~gAT~e--  197 (297)
T 4eiv_A          123 WRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQG-GDIISRAAVAALEGGADFLQTSSGLG-ATHATMF--  197 (297)
T ss_dssp             THHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCC-HHHHHHHHHHHHHHTCSEEECCCSSS-SCCCCHH--
T ss_pred             HHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCc-HHHHHHHHHHHHHhCCCEEEcCCCCC-CCCCCHH--
Confidence            465555   578889999999998884 556776432111112 23222345677789999997654321 0121111  


Q ss_pred             CCCCCccHHHHHHHHhc--------------------CCCceEEEc-cCCCCHHHHHHHHH
Q 023442           94 RTIPPLKYEYYYALLRD--------------------FPDLTFTLN-GGINTVDEVNAALR  133 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~--------------------~~~ipVi~n-GdI~s~eda~~~l~  133 (282)
                            ....+.+.+++                    ...+.|=++ |||+|.+|+.++++
T Consensus       198 ------dV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~  252 (297)
T 4eiv_A          198 ------TVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQ  252 (297)
T ss_dssp             ------HHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHH
Confidence                  12233343321                    146788888 99999999999998

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=93.94  E-value=0.081  Score=47.60  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             ccccCCHHHH-----HHHHHHHhhcCC-ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           19 VSLMLDPKFV-----GEAMSVIAANTN-VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        19 s~Ll~~p~~~-----~eiv~~v~~~~~-ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      +.|+++....     .+.++++++... .++.|-+.       +.++..     .+.++|+|.|-+|.-+.       .+
T Consensus       167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~-------t~eea~-----eal~aGaD~I~LDn~~~-------~~  227 (284)
T 1qpo_A          167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVD-------SLEQLD-----AVLPEKPELILLDNFAV-------WQ  227 (284)
T ss_dssp             SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEES-------SHHHHH-----HHGGGCCSEEEEETCCH-------HH
T ss_pred             hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeC-------CHHHHH-----HHHHcCCCEEEECCCCH-------HH
Confidence            4566654432     345555555431 25555443       234432     23468999999997431       10


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                             --+.+..+....+++++.++||| |++.+.++.++|+|++.+|.....-|++
T Consensus       228 -------~~~~v~~l~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~isvG~l~~~a~~~  278 (284)
T 1qpo_A          228 -------TQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVRVL  278 (284)
T ss_dssp             -------HHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBCCC
T ss_pred             -------HHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEECHHHcCCCCc
Confidence                   01223333333457899999999 8999999999999999999866666654

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=93.90  E-value=0.095  Score=49.11  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=46.5

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+.++|++.|.+|.-.    |.        +...|+.+..+.+..+++||+. |++.++++++.+.+.|+|+|.+|
T Consensus       160 ~~~~~G~d~i~i~~~~----g~--------~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~vg  222 (404)
T 1eep_A          160 ELVKAHVDILVIDSAH----GH--------STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_dssp             HHHHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEEC
T ss_pred             HHHHCCCCEEEEeCCC----CC--------hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEEC
Confidence            3457999999986421    21        1123666777766655899987 77899999999988999999994

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=93.88  E-value=0.45  Score=44.54  Aligned_cols=99  Identities=7%  Similarity=-0.065  Sum_probs=61.5

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +++.-.+.+++|++++ ++++.|...-+|+.    .+..+ +++.+++.|+.+|.        +        .++  +++
T Consensus       195 ~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~----~~A~~-~~~~l~~~~i~~iE--------q--------P~~--d~~  251 (398)
T 4dye_A          195 DCAGDVAILRAVREALPGVNLRVDPNAAWSV----PDSVR-AGIALEELDLEYLE--------D--------PCV--GIE  251 (398)
T ss_dssp             CHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEE--------C--------CSS--HHH
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCH----HHHHH-HHHHHhhcCCCEEc--------C--------CCC--CHH
Confidence            3444455555665554 45556655555542    12222 33445566666552        0        111  466


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      ...++.+. .++||.+...+.+.+++.++++ ..+|.|++--+-.
T Consensus       252 ~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~  295 (398)
T 4dye_A          252 GMAQVKAK-VRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKW  295 (398)
T ss_dssp             HHHHHHHH-CCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHH
T ss_pred             HHHHHHhh-CCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCcccc
Confidence            66777665 5899999999999999999998 6799988754433

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=93.85  E-value=0.46  Score=42.78  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=63.1

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||..+++.+++.++    . .+++||.+|.-... .   .+++... +..+...|...+++.-|...+ +...      
T Consensus       114 IgA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~-t---~~ei~~A-v~~i~~~Gn~~i~L~~rg~~~-~y~~------  176 (292)
T 1o60_A          114 LPAFLARQTDLVEAM----A-KTGAVINVKKPQFL-S---PSQMGNI-VEKIEECGNDKIILCDRGTNF-GYDN------  176 (292)
T ss_dssp             ECGGGTTCHHHHHHH----H-HTTCEEEEECCTTS-C---GGGHHHH-HHHHHHTTCCCEEEEECCEEC-STTC------
T ss_pred             ECcccccCHHHHHHH----H-cCCCcEEEeCCCCC-C---HHHHHHH-HHHHHHcCCCeEEEEECCCCC-CCCc------
Confidence            588899999965554    3 35899999964321 2   2233332 335567898666665554333 2110      


Q ss_pred             CCccHHHHHHHHhcCCCceEEEc---------------cCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                      .-+++..+..+++.++++||+..               +|...  ..-+......|+||+||=+-.
T Consensus       177 ~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~  242 (292)
T 1o60_A          177 LIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP  242 (292)
T ss_dssp             EECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred             cccCHHHHHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence            01234555566665557899882               22111  122333445899999997653

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=93.49  E-value=0.086  Score=47.33  Aligned_cols=80  Identities=13%  Similarity=0.120  Sum_probs=47.6

Q ss_pred             HHhCCCCEEEEecC-Cc-ccCCCCcCCcCCCC--CccHHHHHHHHhc-CCCceEEEc-cCCCCHHHHHHHHH--cCCCEE
Q 023442           68 SSLSPTRHFIIHSR-KA-LLNGISPAENRTIP--PLKYEYYYALLRD-FPDLTFTLN-GGINTVDEVNAALR--KGAHHV  139 (282)
Q Consensus        68 le~~Gv~~i~VH~R-t~-~~~G~~~ad~~~i~--~~~~~~i~~l~~~-~~~ipVi~n-GdI~s~eda~~~l~--~g~DgV  139 (282)
                      +.++|+|.|.+|.. |. ..-|...+-  ...  +-..+.+.+.+++ .+++.|+.- |+|.+++|++.+++  .|+||+
T Consensus       179 mA~agpDiI~~h~glT~gglIG~~~av--s~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~  256 (286)
T 2p10_A          179 MAKAGADILVCHMGLTTGGAIGARSGK--SMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGF  256 (286)
T ss_dssp             HHHHTCSEEEEECSCC---------CC--CHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEE
T ss_pred             HHHcCCCEEEECCCCCCCCcccCCCcc--cHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEE
Confidence            45789999999964 32 112221000  000  0001112222232 467776654 49999999999999  379999


Q ss_pred             EecHHhhhCC
Q 023442          140 MVGRAAYQNP  149 (282)
Q Consensus       140 mIGRgal~nP  149 (282)
                      ..|.++..=|
T Consensus       257 ~gASsier~p  266 (286)
T 2p10_A          257 YGASSMERLP  266 (286)
T ss_dssp             EESHHHHHHH
T ss_pred             EeehhhhcCC
Confidence            9999987777

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=93.41  E-value=0.53  Score=40.17  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=57.4

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCC-----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~-----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.++.+++.+++|+..-+|.++++.     ...+. +    +.+.++|++.|.+|......    +.+ .    .-.+.+
T Consensus        59 ~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~-i----~~~~~~Gad~V~l~~~~~~~----~~~-~----~~~~~i  124 (234)
T 1yxy_A           59 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTE-V----DQLAALNIAVIAMDCTKRDR----HDG-L----DIASFI  124 (234)
T ss_dssp             HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHH-H----HHHHTTTCSEEEEECCSSCC----TTC-C----CHHHHH
T ss_pred             HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHH-H----HHHHHcCCCEEEEcccccCC----CCC-c----cHHHHH
Confidence            3477778878899832234333221     12222 2    23468999999999753210    000 0    013556


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      ..+.+.+++++|+.  ++.|++++..+.+.|+|.|
T Consensus       125 ~~i~~~~~~~~v~~--~~~t~~ea~~a~~~Gad~i  157 (234)
T 1yxy_A          125 RQVKEKYPNQLLMA--DISTFDEGLVAHQAGIDFV  157 (234)
T ss_dssp             HHHHHHCTTCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred             HHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence            66665555777665  6889999999888999998

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=93.41  E-value=0.87  Score=41.52  Aligned_cols=102  Identities=15%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             ccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           19 VSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        19 s~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      +.|+++...     +.+.++++++.. ..++.|=+       ++++++.+    . .++|+|.|-++.-+          
T Consensus       204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEV-------dtldea~e----A-l~aGaD~I~LDn~~----------  261 (320)
T 3paj_A          204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVET-------ETLAELEE----A-ISAGADIIMLDNFS----------  261 (320)
T ss_dssp             CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEE-------SSHHHHHH----H-HHTTCSEEEEESCC----------
T ss_pred             hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEE-------CCHHHHHH----H-HHcCCCEEEECCCC----------
Confidence            556776653     234455555543 34554433       23444322    2 35899999887521          


Q ss_pred             cCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           93 NRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                              .+.+++.++.. .++++.++||| |.+.+.++.++|+|++.+|.--..-|++
T Consensus       262 --------~~~l~~av~~l~~~v~ieaSGGI-t~~~I~~~a~tGVD~isvGalt~sa~~l  312 (320)
T 3paj_A          262 --------LEMMREAVKINAGRAALENSGNI-TLDNLKECAETGVDYISVGALTKHLKAL  312 (320)
T ss_dssp             --------HHHHHHHHHHHTTSSEEEEESSC-CHHHHHHHHTTTCSEEECTHHHHSBCCC
T ss_pred             --------HHHHHHHHHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEECceecCCCcc
Confidence                    23344443321 47899999999 7999999999999999999754444543

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=93.02  E-value=0.33  Score=42.63  Aligned_cols=49  Identities=14%  Similarity=0.273  Sum_probs=38.2

Q ss_pred             HHHHHHHHh---c-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          101 YEYYYALLR---D-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       101 ~~~i~~l~~---~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++-++++++   + ..+++|..-|||+ ++.+.++.+.|||.+.+|+++.+.+.
T Consensus       179 l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~d  231 (246)
T 3inp_A          179 LDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDS  231 (246)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSC
T ss_pred             HHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCC
Confidence            555554433   1 3468999999996 78999999999999999999876665

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=92.96  E-value=0.31  Score=42.31  Aligned_cols=105  Identities=10%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             HHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHH
Q 023442           28 VGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYAL  107 (282)
Q Consensus        28 ~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l  107 (282)
                      +.++++.+++. ++.+.+=+..+... +.+       ..++  .++|.+.+.+......|.      ...+..++-++++
T Consensus        95 ~~~~i~~i~~~-G~k~gv~lnp~tp~-~~~-------~~~l--~~~D~VlvmsV~pGfggQ------~f~~~~l~kI~~l  157 (231)
T 3ctl_A           95 AFRLIDEIRRH-DMKVGLILNPETPV-EAM-------KYYI--HKADKITVMTVDPGFAGQ------PFIPEMLDKLAEL  157 (231)
T ss_dssp             HHHHHHHHHHT-TCEEEEEECTTCCG-GGG-------TTTG--GGCSEEEEESSCTTCSSC------CCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCeEEEEEECCCcH-HHH-------HHHH--hcCCEEEEeeeccCcCCc------cccHHHHHHHHHH
Confidence            45667777654 55555544433211 111       1122  268888754433222221      1112234444444


Q ss_pred             Hhc----CCCceEEEccCCCCHHHHHHHHHcCCCEEEec-HHhhhCCc
Q 023442          108 LRD----FPDLTFTLNGGINTVDEVNAALRKGAHHVMVG-RAAYQNPW  150 (282)
Q Consensus       108 ~~~----~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG-Rgal~nP~  150 (282)
                      .+.    ..+++|..-||| +.+.+.++.+.|+|.+.+| +++...+.
T Consensus       158 r~~~~~~~~~~~I~VdGGI-~~~~~~~~~~aGAd~~V~G~saif~~~d  204 (231)
T 3ctl_A          158 KAWREREGLEYEIEVDGSC-NQATYEKLMAAGADVFIVGTSGLFNHAE  204 (231)
T ss_dssp             HHHHHHHTCCCEEEEESCC-STTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred             HHHHhccCCCceEEEECCc-CHHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence            321    236899999999 4788999999999999999 98876544

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=92.95  E-value=0.74  Score=41.38  Aligned_cols=102  Identities=13%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             ccccCCHH--H---HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           19 VSLMLDPK--F---VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        19 s~Ll~~p~--~---~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      +.|+++..  .   +.+.++++++.. ..|+.|=+       +++++..+     +.++|+|.|-++.-+          
T Consensus       171 ~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv-------~tl~ea~e-----Al~aGaD~I~LDn~~----------  228 (287)
T 3tqv_A          171 AYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV-------TNLDELNQ-----AIAAKADIVMLDNFS----------  228 (287)
T ss_dssp             SEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE-------SSHHHHHH-----HHHTTCSEEEEESCC----------
T ss_pred             EEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe-------CCHHHHHH-----HHHcCCCEEEEcCCC----------
Confidence            55666543  2   334455555432 35555533       23444322     236899999887622          


Q ss_pred             cCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           93 NRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                              .+.+++.++. ..++++.++||| |++.+.++.++|+|.+.+|.-...-|++
T Consensus       229 --------~~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~IsvGalt~sa~~l  279 (287)
T 3tqv_A          229 --------GEDIDIAVSIARGKVALEVSGNI-DRNSIVAIAKTGVDFISVGAITKHIKAI  279 (287)
T ss_dssp             --------HHHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHTTTCSEEECSHHHHSBCCC
T ss_pred             --------HHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhcCCccc
Confidence                    1333333332 147899999999 8999999999999999999655555554

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=92.95  E-value=0.65  Score=41.95  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             hCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           70 LSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        70 ~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      ++|+|.|-++.-+                  .+.+++.++. ..++++.++||| |.+.+.++.++|+|++.+|.....-
T Consensus       227 ~aGaD~I~LDn~~------------------~~~l~~av~~i~~~v~ieaSGGI-~~~~i~~~a~tGVD~isvG~lt~sa  287 (298)
T 3gnn_A          227 AHGARSVLLDNFT------------------LDMMRDAVRVTEGRAVLEVSGGV-NFDTVRAIAETGVDRISIGALTKDV  287 (298)
T ss_dssp             HTTCEEEEEESCC------------------HHHHHHHHHHHTTSEEEEEESSC-STTTHHHHHHTTCSEEECGGGGTSC
T ss_pred             HcCCCEEEECCCC------------------HHHHHHHHHHhCCCCeEEEEcCC-CHHHHHHHHHcCCCEEEECCeecCC
Confidence            5899999887622                  2333333332 357899999999 8899999999999999999765555


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      |++
T Consensus       288 ~~l  290 (298)
T 3gnn_A          288 RAT  290 (298)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            654

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=92.90  E-value=0.068  Score=59.73  Aligned_cols=47  Identities=15%  Similarity=0.270  Sum_probs=39.2

Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHH-----------HcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAAL-----------RKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l-----------~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++++ .++||||+.|||-+.+++..++           ..|+|||.+|.-++.-..-
T Consensus       754 ~~~v~~-~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea  811 (2051)
T 2uv8_G          754 YSKIRR-HPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEV  811 (2051)
T ss_dssp             HHHHTT-CTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTS
T ss_pred             HHHHHh-cCCceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCccc
Confidence            444444 5699999999999999999999           5799999999998876543

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=92.84  E-value=0.15  Score=48.06  Aligned_cols=63  Identities=16%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.+.++|++.|.+..-    .|.+        .--.+.+.++++.+ ++||++ |++.|+++++.+.+.|+|+|.+|
T Consensus       150 ~~lveaGvdvIvldta----~G~~--------~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~vG  212 (400)
T 3ffs_A          150 KLLVEAGVDVIVLDSA----HGHS--------LNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG  212 (400)
T ss_dssp             HHHHHHTCSEEEECCS----CCSB--------HHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHcCCCEEEEeCC----CCCc--------ccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEEe
Confidence            3456789999987421    1210        00145566666654 789886 78999999999999999999996

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=92.59  E-value=1.5  Score=37.75  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      ..+.++++.+...-++-|||  +.--+++ .+.+.+. .+++.++++|+.+|.+-+                    .+.+
T Consensus         5 ~~~~~~~~~~~~~~~livsc--q~~~~~pl~~~~~~~-~~A~a~~~~Ga~~i~~~~--------------------~~~i   61 (229)
T 3q58_A            5 SLLARLEQSVHENGGLIVSC--QPVPGSPMDKPEIVA-AMAQAAASAGAVAVRIEG--------------------IENL   61 (229)
T ss_dssp             HHHHHHHHHHHHHCCEEEEC--CCCTTSTTCSHHHHH-HHHHHHHHTTCSEEEEES--------------------HHHH
T ss_pred             HHHHHHHHHhhhcCCEEEEE--eCCCCCCCCCcchHH-HHHHHHHHCCCcEEEECC--------------------HHHH
Confidence            34566666663322455555  4322222 2233444 357788999999998721                    4556


Q ss_pred             HHHHhcCCCceEEE-c----cC--C---CCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          105 YALLRDFPDLTFTL-N----GG--I---NTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       105 ~~l~~~~~~ipVi~-n----Gd--I---~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .++++ .+++||++ +    ||  +   .+.+++.++++.|+|.|.++-++..+|..
T Consensus        62 ~~ir~-~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~  117 (229)
T 3q58_A           62 RTVRP-HLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVD  117 (229)
T ss_dssp             HHHGG-GCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSC
T ss_pred             HHHHH-hcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHH
Confidence            66655 46899984 1    22  2   25678988888999999998777778864

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=92.57  E-value=0.65  Score=43.13  Aligned_cols=108  Identities=6%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             ccCCHHHHHHHHHHHhh-cCCccEEEEecC----C-CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc--ccCCCCcCC
Q 023442           21 LMLDPKFVGEAMSVIAA-NTNVPVSVKCRI----G-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA--LLNGISPAE   92 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~-~~~ipvsvKiR~----G-~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~--~~~G~~~ad   92 (282)
                      .+++|+..... +.+++ +-+.|+..-+..    + |+    .+.    +.+.++..+++++.+|--..  ..+.....+
T Consensus       100 ~l~~~~~~~s~-~~vr~~ap~~~~~anlg~~ql~~~~~----~~~----~~~av~~~~a~al~Ihln~~~~~~~p~g~~~  170 (368)
T 3vkj_A          100 AIEKAEARESF-AIVRKVAPTIPIIANLGMPQLVKGYG----LKE----FQDAIQMIEADAIAVHLNPAQEVFQPEGEPE  170 (368)
T ss_dssp             HHHCGGGSHHH-HHHHHHCSSSCEEEEEEGGGGGTTCC----HHH----HHHHHHHTTCSEEEEECCHHHHHHSSSCCCB
T ss_pred             ccCCHHHHhhH-HHHHHhCcCcceecCcCeeecCCCCC----HHH----HHHHHHHhcCCCeEEEecchhhhhCCCCCch
Confidence            45567653332 33332 346788766554    3 43    222    22334556788888984321  111111111


Q ss_pred             cCCCCCccHHHHHHHHhcCCCceEEEc--cCCCCHHHHHHHHHcCCCEEEe
Q 023442           93 NRTIPPLKYEYYYALLRDFPDLTFTLN--GGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~~~~ipVi~n--GdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ..   ...++.+..+++. .++||+.=  |.-.|+++++.+.+.|+|+|.+
T Consensus       171 ~~---~~~~~~i~~i~~~-~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V  217 (368)
T 3vkj_A          171 YQ---IYALEKLRDISKE-LSVPIIVKESGNGISMETAKLLYSYGIKNFDT  217 (368)
T ss_dssp             CB---THHHHHHHHHHTT-CSSCEEEECSSSCCCHHHHHHHHHTTCCEEEC
T ss_pred             hh---HHHHHHHHHHHHH-cCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEE
Confidence            11   0125667777664 58999884  5556999999999999999988

>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}

Probab=92.30  E-value=1.5  Score=40.38  Aligned_cols=45  Identities=9%  Similarity=0.111  Sum_probs=36.2

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      ++-+++...++.+. .++||.+.-.+.|.+|+.++++ ..+|.|.+=
T Consensus       225 ~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik  270 (365)
T 3ik4_A          225 PREDWAGMAQVTAQ-SGFAVAADESARSAHDVLRIAREGTASVINIK  270 (365)
T ss_dssp             CTTCHHHHHHHHHH-SSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             CcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhCCCCEEEEc
Confidence            33357777777765 5799999999999999999998 678988764

>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A

Probab=92.24  E-value=0.41  Score=44.96  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++...+.++++++++  ++.+.+...-+|+.    .+..+ +++.+++.++.+|.        +.        +++-+++
T Consensus       204 ~~~d~~~v~avR~a~G~~~~l~vDan~~~~~----~~A~~-~~~~l~~~~i~~iE--------eP--------~~~~d~~  262 (421)
T 4hnl_A          204 METTLKMFAAIKEKYGNQFQMLHDVHERLHP----NQAIQ-FAKAAEPYQLFFLE--------DI--------LPPDQSH  262 (421)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEEECTTCSCH----HHHHH-HHHHHGGGCCSEEE--------CC--------SCGGGGG
T ss_pred             HHHHHHHHHHHHHHhCCCceEeccccccCCH----HHHHH-HHHHhhhhhhcccc--------cC--------CcccchH
Confidence            566677888888887  57788887777754    33333 45678888888773        11        1222355


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ..+++.+. .++||.+.-.+.|..|+.++++ ..||.|++
T Consensus       263 ~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~  301 (421)
T 4hnl_A          263 WLTQLRSQ-SATPIATGELFNNPMEWQELVKNRQIDFMRA  301 (421)
T ss_dssp             GHHHHHTT-CCCCEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred             HHHHHHhc-CCCCeecCcceehhHHHHHHHhcCCceEEEe
Confidence            56666654 6899999999999999999999 56887754

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=92.18  E-value=3.7  Score=36.48  Aligned_cols=111  Identities=15%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCC-CEEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPT-RHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv-~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++.++-+     +++||.+|.-.  ..  +..|+...+ ..+...|. +.+.+|-.+..|.+.   .   
T Consensus       127 Igs~~~~n~~ll~~~a~-----~~kPV~lk~G~--~~--t~~ei~~Av-e~i~~~Gn~~i~L~~Rg~~~yp~y---~---  190 (276)
T 1vs1_A          127 IGARNMQNFPLLREVGR-----SGKPVLLKRGF--GN--TVEELLAAA-EYILLEGNWQVVLVERGIRTFEPS---T---  190 (276)
T ss_dssp             ECGGGTTCHHHHHHHHH-----HTCCEEEECCT--TC--CHHHHHHHH-HHHHHTTCCCEEEEECCBCCSCCS---S---
T ss_pred             ECcccccCHHHHHHHHc-----cCCeEEEcCCC--CC--CHHHHHHHH-HHHHHcCCCeEEEEeCCcCCCCCc---C---
Confidence            58899999999777653     38999999643  21  344544433 34567887 555567223222211   1   


Q ss_pred             CCCccHHHHHHHHhcCCCceEEE-----ccCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTL-----NGGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~-----nGdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                      ...+++..+..+++.+ ++||++     +|+ ..  .+-+......|+||+||=+-.
T Consensus       191 ~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~-~~~~~~~~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          191 RFTLDVAAVAVLKEAT-HLPVIVDPSHPAGR-RSLVPALAKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             SSBCBHHHHHHHHHHB-SSCEEECCHHHHCS-GGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             cchhCHHHHHHHHHHh-CCCEEEeCCCCCCc-cchHHHHHHHHHHcCCCEEEEEecC
Confidence            1234577676666543 789875     232 22  333444455899999997653

>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}

Probab=92.18  E-value=0.95  Score=42.16  Aligned_cols=46  Identities=11%  Similarity=-0.086  Sum_probs=37.2

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      +++...++.+. .++||.+...+.|.+|+.++++ ..+|.|++--+-.
T Consensus       246 ~~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~  292 (391)
T 4e8g_A          246 TLEEIAAIRGR-VQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRI  292 (391)
T ss_dssp             SHHHHHHHGGG-CCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred             cHHHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcccc
Confidence            47777777664 5899999999999999999998 6799988764443

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=92.07  E-value=1.4  Score=39.70  Aligned_cols=56  Identities=14%  Similarity=0.040  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK   82 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt   82 (282)
                      -..+.+...++.|...+++||.+.+-.|+.+   .+.+.+.+ +.++++|+.++.+-+..
T Consensus        66 vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~---~~~v~~~v-~~l~~aGaagv~iEDq~  121 (298)
T 3eoo_A           66 STMDDVLVDANRITNATNLPLLVDIDTGWGG---AFNIARTI-RSFIKAGVGAVHLEDQV  121 (298)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCEEEECTTCSSS---HHHHHHHH-HHHHHTTCSEEEEECBC
T ss_pred             CCHHHHHHHHHHHHhhcCCeEEEECCCCCCC---HHHHHHHH-HHHHHhCCeEEEECCCC
Confidence            3456777777888888899999999999743   33444443 55678999999998654

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=91.96  E-value=1.2  Score=40.24  Aligned_cols=93  Identities=13%  Similarity=0.159  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      -+++.+.+.++.+++.++.|+.|-+-. ++.  .+.+.    ++.+.++|++.|.+|+..       |          .+
T Consensus        46 ~~~~~~~~~i~~i~~~~~~p~gvnl~~-~~~--~~~~~----~~~a~~~g~d~V~~~~g~-------p----------~~  101 (332)
T 2z6i_A           46 APKEVVKANIDKIKSLTDKPFGVNIML-LSP--FVEDI----VDLVIEEGVKVVTTGAGN-------P----------SK  101 (332)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCEEEEECT-TST--THHHH----HHHHHHTTCSEEEECSSC-------G----------GG
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEecC-CCC--CHHHH----HHHHHHCCCCEEEECCCC-------h----------HH
Confidence            378888899999988777898887643 222  23332    334568999999999732       1          12


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe-cH
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV-GR  143 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI-GR  143 (282)
                      .+..+.+  .++||+.  .|.+.++++.+.+.|+|+|.+ |+
T Consensus       102 ~i~~l~~--~g~~v~~--~v~~~~~a~~~~~~GaD~i~v~g~  139 (332)
T 2z6i_A          102 YMERFHE--AGIIVIP--VVPSVALAKRMEKIGADAVIAEGM  139 (332)
T ss_dssp             THHHHHH--TTCEEEE--EESSHHHHHHHHHTTCSCEEEECT
T ss_pred             HHHHHHH--cCCeEEE--EeCCHHHHHHHHHcCCCEEEEECC
Confidence            2333433  2688874  478999998888899999998 64

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=91.80  E-value=0.15  Score=44.58  Aligned_cols=35  Identities=11%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CceEEEccCCCCHHHHHHHHH--cCCCEEEecHHhhhC
Q 023442          113 DLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQN  148 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGRgal~n  148 (282)
                      ++||..-||| +.+.+.++.+  .|+|++.+|++++..
T Consensus       187 ~~~I~vdGGI-~~~~~~~~~~~~aGad~~VvGSaIf~~  223 (237)
T 3cu2_A          187 EKLINIDGSM-TLELAKYFKQGTHQIDWLVSGSALFSG  223 (237)
T ss_dssp             GCEEEEESSC-CHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred             CceEEEECCc-CHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence            6899999999 5899999999  999999999998874

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=91.77  E-value=0.43  Score=39.83  Aligned_cols=81  Identities=11%  Similarity=-0.027  Sum_probs=52.1

Q ss_pred             ccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCC-CceEEEc
Q 023442           41 VPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFP-DLTFTLN  119 (282)
Q Consensus        41 ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~-~ipVi~n  119 (282)
                      .|+.+=+|. . +   .++..+ +++.+.+.|++.|.+|.++..               ..+.+.++.+..+ ++ +++.
T Consensus        10 ~~~i~~~~~-~-~---~~~~~~-~~~~~~~~G~~~iev~~~~~~---------------~~~~i~~ir~~~~~~~-~ig~   67 (205)
T 1wa3_A           10 HKIVAVLRA-N-S---VEEAKE-KALAVFEGGVHLIEITFTVPD---------------ADTVIKELSFLKEKGA-IIGA   67 (205)
T ss_dssp             HCEEEEECC-S-S---HHHHHH-HHHHHHHTTCCEEEEETTSTT---------------HHHHHHHTHHHHHTTC-EEEE
T ss_pred             CCEEEEEec-C-C---HHHHHH-HHHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCCCc-EEEe
Confidence            356555663 2 2   233333 456778899999999987521               0233444444333 33 4567


Q ss_pred             cCCCCHHHHHHHHHcCCCEEEecHH
Q 023442          120 GGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       120 GdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      |-+.|++++..+.+.|+|+| ++-+
T Consensus        68 ~~v~~~~~~~~a~~~Gad~i-v~~~   91 (205)
T 1wa3_A           68 GTVTSVEQCRKAVESGAEFI-VSPH   91 (205)
T ss_dssp             ESCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred             cccCCHHHHHHHHHcCCCEE-EcCC
Confidence            78899999999999999999 6644

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=91.64  E-value=0.87  Score=40.66  Aligned_cols=112  Identities=13%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||..+++.+++.++    . .++.||.+|.-... .   ..++... +..+...|...+++.-|+..| +.   +.   
T Consensus       111 Iga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~-t---~~e~~~A-~~~i~~~Gn~~i~L~~rg~~~-~~---~~---  173 (280)
T 2qkf_A          111 LPAFLARQTDLVVAM----A-KTGNVVNIKKPQFL-S---PSQMKNI-VEKFHEAGNGKLILCERGSSF-GY---DN---  173 (280)
T ss_dssp             ECGGGTTBHHHHHHH----H-HTCCEEEEECCTTS-C---GGGHHHH-HHHHHHTTCCCEEEEECCEEC-ST---TC---
T ss_pred             ECcccccCHHHHHHH----H-cCCCcEEEECCCCC-C---HHHHHHH-HHHHHHcCCCeEEEEECCCCC-CC---Cc---
Confidence            588889999865554    2 45899999964321 2   2233332 335567898666665554333 21   10   


Q ss_pred             CCccHHHHHHHHhcCCCceEEEc-----------cCCCC------HHHHHHHHHcCCCEEEecHHh
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLN-----------GGINT------VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~n-----------GdI~s------~eda~~~l~~g~DgVmIGRga  145 (282)
                      ..++...+..+++.++++||+..           |+-..      ..-+......|+||+||=+-.
T Consensus       174 ~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~  239 (280)
T 2qkf_A          174 LVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHP  239 (280)
T ss_dssp             EECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC--
T ss_pred             cccCHHHHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecC
Confidence            01234455566665557899883           11111      122333344899999997654

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=91.53  E-value=0.25  Score=42.48  Aligned_cols=70  Identities=24%  Similarity=0.406  Sum_probs=48.4

Q ss_pred             HHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHH--HHHHHHHcCCCEE
Q 023442           62 DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVD--EVNAALRKGAHHV  139 (282)
Q Consensus        62 ~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~e--da~~~l~~g~DgV  139 (282)
                      ..++++.+++|++.+.+.+..                  .+.+..+.+..++ .++..|||.. +  +..++++.|+|.+
T Consensus       118 ~~~a~~a~~~G~~GvV~sat~------------------~~e~~~ir~~~~~-f~~v~pGI~~-~g~~~~~a~~~Gad~i  177 (215)
T 3ve9_A          118 PYLREVARRVNPKGFVAPATR------------------PSMISRVKGDFPD-KLVISPGVGT-QGAKPGIALCHGADYE  177 (215)
T ss_dssp             HHHHHHHHHHCCSEEECCTTS------------------HHHHHHHHHHCTT-SEEEECCTTS-TTCCTTHHHHTTCSEE
T ss_pred             HHHHHHHHHcCCCceeeCCCC------------------HHHHHHHHHhCCC-cEEEcCCCCc-CcCCHHHHHHcCCCEE
Confidence            345667788899888775521                  2233444444556 5778899863 3  5667777899999


Q ss_pred             EecHHhhhCCcc
Q 023442          140 MVGRAAYQNPWY  151 (282)
Q Consensus       140 mIGRgal~nP~i  151 (282)
                      .+||+++..+..
T Consensus       178 VvGr~I~~a~dp  189 (215)
T 3ve9_A          178 IVGRSVYQSADP  189 (215)
T ss_dssp             EECHHHHTSSSH
T ss_pred             EeCHHHcCCCCH
Confidence            999999887663

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=91.50  E-value=0.67  Score=43.01  Aligned_cols=73  Identities=14%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH-HHHHHHHhcCCCceEEEccCC---CCHHHHHHHHHcCCCEEE
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY-EYYYALLRDFPDLTFTLNGGI---NTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~-~~i~~l~~~~~~ipVi~nGdI---~s~eda~~~l~~g~DgVm  140 (282)
                      .+.++..|+|++.+|-...... ..|.......  .| +.+.++++. .++||+.=| |   .++++++.+.+.|+|+|.
T Consensus       161 ~~~ve~~~adal~ihln~~qe~-~~p~Gd~~~~--~~~~~I~~l~~~-~~~PVivK~-vg~g~s~e~A~~l~~aGad~I~  235 (365)
T 3sr7_A          161 LQAVRDLQPLFLQVHINLMQEL-LMPEGEREFR--SWKKHLSDYAKK-LQLPFILKE-VGFGMDVKTIQTAIDLGVKTVD  235 (365)
T ss_dssp             HHHHHHHCCSCEEEEECHHHHH-TSSSSCCCCH--HHHHHHHHHHHH-CCSCEEEEE-CSSCCCHHHHHHHHHHTCCEEE
T ss_pred             HHHHHhcCCCEEEEeccccccc-cCCCCCCcHH--HHHHHHHHHHHh-hCCCEEEEE-CCCCCCHHHHHHHHHcCCCEEE
Confidence            4456788999999997542100 0011101000  24 557777665 589998764 6   799999999999999998


Q ss_pred             ec
Q 023442          141 VG  142 (282)
Q Consensus       141 IG  142 (282)
                      ++
T Consensus       236 V~  237 (365)
T 3sr7_A          236 IS  237 (365)
T ss_dssp             CC
T ss_pred             Ee
Confidence            83

>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}

Probab=91.48  E-value=1.3  Score=42.02  Aligned_cols=44  Identities=7%  Similarity=-0.028  Sum_probs=34.0

Q ss_pred             CccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           98 PLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        98 ~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +-+++...++.+.  ..++||.+.-.+.|..++.++++ ..+|.|++
T Consensus       282 ~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~  328 (441)
T 4a35_A          282 PDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQI  328 (441)
T ss_dssp             TTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             cccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEE
Confidence            3346666666553  14799999999999999999998 67888765

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=91.26  E-value=1.8  Score=38.82  Aligned_cols=111  Identities=13%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||..+++.+++.++-     .+++||.+|.-...+    .+|+... +..+.+.|.+.|++--|+-.| +.   ++   
T Consensus       116 IgA~~~~n~~LLr~va-----~~gkPVilK~G~~~t----~~ei~~a-ve~i~~~Gn~~i~L~erg~~y-~~---~~---  178 (285)
T 3sz8_A          116 VPAFLARQTDLVVAIA-----KAGKPVNVKKPQFMS----PTQLKHV-VSKCGEVGNDRVMLCERGSSF-GY---DN---  178 (285)
T ss_dssp             ECGGGTTCHHHHHHHH-----HTSSCEEEECCTTSC----GGGTHHH-HHHHHHTTCCCEEEEECCEEC-SS---SC---
T ss_pred             ECccccCCHHHHHHHH-----ccCCcEEEeCCCCCC----HHHHHHH-HHHHHHcCCCcEEEEeCCCCC-CC---Cc---
Confidence            5888999999655543     358999999654211    1222222 334567888777764444333 21   11   


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCC-----------C------HHHHHHHHHcCCCEEEecHH
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGIN-----------T------VDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~-----------s------~eda~~~l~~g~DgVmIGRg  144 (282)
                      .-+++..+..+++.++++||+...+=.           +      +.-+..+...||||+||=+-
T Consensus       179 ~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H  243 (285)
T 3sz8_A          179 LVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH  243 (285)
T ss_dssp             EECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred             CccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence            012355555666655469998843321           1      23344455589999998654

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=91.18  E-value=1.8  Score=39.02  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             ccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCC
Q 023442           19 VSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAE   92 (282)
Q Consensus        19 s~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad   92 (282)
                      +.|++|...     +.+.++.+++.. ..|+.|=+       +++++..+    . .++|+|.|-+..-+          
T Consensus       180 ~vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv-------~tl~e~~e----A-l~aGaDiImLDn~s----------  237 (300)
T 3l0g_A          180 GVLIKDNHIASCGSITLAIQRLRKNLKNEYIAIEC-------DNISQVEE----S-LSNNVDMILLDNMS----------  237 (300)
T ss_dssp             CEEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEE-------SSHHHHHH----H-HHTTCSEEEEESCC----------
T ss_pred             eEEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEE-------CCHHHHHH----H-HHcCCCEEEECCCC----------
Confidence            456666542     234555555543 34555533       23444332    2 36899999776421          


Q ss_pred             cCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           93 NRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        93 ~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                              .+.+++.++. ..++.+.++||| |++.+.++.++|+|.+.+|.--..-|++
T Consensus       238 --------~~~l~~av~~~~~~v~leaSGGI-t~~~i~~~A~tGVD~IsvGalthsa~~l  288 (300)
T 3l0g_A          238 --------ISEIKKAVDIVNGKSVLEVSGCV-NIRNVRNIALTGVDYISIGCITNSFQNK  288 (300)
T ss_dssp             --------HHHHHHHHHHHTTSSEEEEESSC-CTTTHHHHHTTTCSEEECGGGTSSCCCC
T ss_pred             --------HHHHHHHHHhhcCceEEEEECCC-CHHHHHHHHHcCCCEEEeCccccCCCcc
Confidence                    1333333322 136899999999 8999999999999999999444344554

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=91.14  E-value=0.067  Score=48.33  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=28.2

Q ss_pred             CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          112 PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +++||.++||| |.+.+.++.++|+|++.+|......|++
T Consensus       248 ~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~~~  286 (294)
T 3c2e_A          248 KHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTPVI  286 (294)
T ss_dssp             -CCEEEEECCC-CC------CCCSCSEEECGGGTSSCCCC
T ss_pred             CCeEEEEECCC-CHHHHHHHHHcCCCEEEEechhcCCCCC
Confidence            45999999999 9999999999999999999887666765

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=91.12  E-value=1.9  Score=39.83  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +...|+.+..+++. .++||+.-| +.+.+|++.+.+.|+|+|.+
T Consensus       202 ~~~~w~~i~~lr~~-~~~PvivK~-v~~~e~A~~a~~~GaD~I~v  244 (352)
T 3sgz_A          202 ASFCWNDLSLLQSI-TRLPIILKG-ILTKEDAELAMKHNVQGIVV  244 (352)
T ss_dssp             TTCCHHHHHHHHHH-CCSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             CCCCHHHHHHHHHh-cCCCEEEEe-cCcHHHHHHHHHcCCCEEEE
Confidence            45679999888775 589997665 68999999999999999987

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=91.02  E-value=0.55  Score=42.40  Aligned_cols=68  Identities=7%  Similarity=-0.028  Sum_probs=48.3

Q ss_pred             HHHHHHhCCCCEEEEecCC----cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           64 IYKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt----~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      +++..+++|++.|.+-.+.    ...+|..       .....+++.++.+. .++||++-+.+...++++.+.+.|||.|
T Consensus        33 ~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~-------R~~~~~~i~~i~~~-v~iPvl~k~~i~~ide~qil~aaGAD~I  104 (297)
T 4adt_A           33 QAKIAEKAGAIGVMILENIPSELRNTDGVA-------RSVDPLKIEEIRKC-ISINVLAKVRIGHFVEAQILEELKVDML  104 (297)
T ss_dssp             HHHHHHHHTCSEEEECCCCC-----CCCCC-------CCCCHHHHHHHHTT-CCSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHcCCCEEEEecCCCCcchhcCCcc-------cCCCHHHHHHHHHh-cCCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence            3567889999999987321    1223311       01126788787764 6999999888888888888888999999

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=90.59  E-value=0.1  Score=44.43  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++||+.-|||. ++.+.++++.|+|+|.+||++...+.
T Consensus       163 ~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~a~d  199 (216)
T 1q6o_A          163 GFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDAAS  199 (216)
T ss_dssp             TCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHTSSC
T ss_pred             CCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcCCCC
Confidence            68899999997 78888888899999999999987554

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=90.54  E-value=2.2  Score=41.23  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=34.3

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ...|+.+..+++. .++||+.-| +.++++++.+.+.|+|+|.+
T Consensus       329 ~~~~~~i~~lr~~-~~~PvivKg-v~~~e~A~~a~~aGad~I~v  370 (511)
T 1kbi_A          329 SLTWKDIEELKKK-TKLPIVIKG-VQRTEDVIKAAEIGVSGVVL  370 (511)
T ss_dssp             TCCHHHHHHHHHH-CSSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             HhHHHHHHHHHHH-hCCcEEEEe-CCCHHHHHHHHHcCCCEEEE
Confidence            4468888777765 489998764 66899999988899999999

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=90.54  E-value=0.71  Score=41.70  Aligned_cols=107  Identities=8%  Similarity=0.049  Sum_probs=60.6

Q ss_pred             cccCCHHHHHHHHHHHhhc-CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           20 SLMLDPKFVGEAMSVIAAN-TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        20 ~Ll~~p~~~~eiv~~v~~~-~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      .|....+.+.+| ++.+++ .+.++.|--|.--.....+++.++. ++.+.++|+|.|.+|+.+.               
T Consensus       133 ~l~~~~e~~~ri-~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~R-a~ay~~AGAD~if~~~~~~---------------  195 (298)
T 3eoo_A          133 ECVPAGEMVDRI-KAAVDARTDETFVIMARTDAAAAEGIDAAIER-AIAYVEAGADMIFPEAMKT---------------  195 (298)
T ss_dssp             CBCCHHHHHHHH-HHHHHHCSSTTSEEEEEECTHHHHHHHHHHHH-HHHHHHTTCSEEEECCCCS---------------
T ss_pred             eecCHHHHHHHH-HHHHHhccCCCeEEEEeehhhhhcCHHHHHHH-HHhhHhcCCCEEEeCCCCC---------------
Confidence            344444455554 444443 3456666666411101124444444 3456789999999998531               


Q ss_pred             ccHHHHHHHHhcCCCceEEEc---cCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           99 LKYEYYYALLRDFPDLTFTLN---GGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~n---GdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                        .+.+.++++.. ++||.+|   |+-...-+..++-+.|+.-|.+|-.++
T Consensus       196 --~ee~~~~~~~~-~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~~~~  243 (298)
T 3eoo_A          196 --LDDYRRFKEAV-KVPILANLTEFGSTPLFTLDELKGANVDIALYCCGAY  243 (298)
T ss_dssp             --HHHHHHHHHHH-CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEECSHHH
T ss_pred             --HHHHHHHHHHc-CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEchHHH
Confidence              35566776654 5888776   332111234445557999999986554

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=90.16  E-value=0.2  Score=58.06  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             hcCCCceEEEccCCCCHHHHHHHH-----------HcCCCEEEecHHhhhCCc
Q 023442          109 RDFPDLTFTLNGGINTVDEVNAAL-----------RKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       109 ~~~~~ipVi~nGdI~s~eda~~~l-----------~~g~DgVmIGRgal~nP~  150 (282)
                      ++..++|||+.|||.+.+++..++           ..|||||.+|..++.-+.
T Consensus       602 r~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~E  654 (3089)
T 3zen_D          602 RSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLE  654 (3089)
T ss_dssp             TTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTT
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcc
Confidence            445789999999999999999999           679999999999886653

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=90.10  E-value=3.1  Score=37.15  Aligned_cols=60  Identities=2%  Similarity=-0.100  Sum_probs=39.2

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      +.-..+.+...+++|...++.|+.+ .=+++-.. .+.++.++...++++++|++++.+-+.
T Consensus        75 ~~vTldemi~h~~aV~r~~~~~~vv-aD~pfgsy~~s~~~a~~na~rl~~eaGa~aVklEdg  135 (281)
T 1oy0_A           75 VPISIDELIPLVRGVVRGAPHALVV-ADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGG  135 (281)
T ss_dssp             SSCCGGGTHHHHHHHHHHCTTSEEE-EECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBS
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCeEE-EECCCCcccCCHHHHHHHHHHHHHHhCCeEEEECCc
Confidence            3344566777778888877756444 33444222 234555566678888899999999874

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=90.07  E-value=3.2  Score=38.21  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=63.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE--ecCCcccCCCCcCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII--HSRKALLNGISPAENR   94 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V--H~Rt~~~~G~~~ad~~   94 (282)
                      .||..+.+.+++.++-     .+++||.+|.-.  ..  +.+|+... +..+...|...+++  || +..|.+..     
T Consensus       195 IgAr~~~n~~LL~~va-----~~~kPVilk~G~--~~--tl~ei~~A-ve~i~~~GN~~viLceRG-~~typ~~~-----  258 (350)
T 1vr6_A          195 IGARNAQNFRLLSKAG-----SYNKPVLLKRGF--MN--TIEEFLLS-AEYIANSGNTKIILCERG-IRTFEKAT-----  258 (350)
T ss_dssp             ECGGGTTCHHHHHHHH-----TTCSCEEEECCT--TC--CHHHHHHH-HHHHHHTTCCCEEEEECC-BCCSCCSS-----
T ss_pred             ECcccccCHHHHHHHH-----ccCCcEEEcCCC--CC--CHHHHHHH-HHHHHHCCCCeEEEEeCC-CCCCCCcC-----
Confidence            5889999999877665     358999999643  21  34454443 33456788865555  33 22221110     


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEE-----ccCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTL-----NGGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~-----nGdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                       ...+++..+..+++. .++||++     +|+ ..  .+-+......||||+||=+-.
T Consensus       259 -~~~vdl~ai~~lk~~-~~lpVi~dssHs~G~-~~~v~~~a~AAvA~GA~Gl~IE~H~  313 (350)
T 1vr6_A          259 -RNTLDISAVPIIRKE-SHLPILVDPSHSGGR-RDLVIPLSRAAIAVGAHGIIVEVHP  313 (350)
T ss_dssp             -SSBCCTTHHHHHHHH-BSSCEEECHHHHHCS-GGGHHHHHHHHHHHTCSEEEEEBCS
T ss_pred             -hhhhhHHHHHHHHHh-hCCCEEEeCCCCCcc-cchHHHHHHHHHHhCCCEEEEEecC
Confidence             112345556566554 3789876     232 22  333444455799999997643

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=89.86  E-value=3  Score=36.69  Aligned_cols=112  Identities=15%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++.++.+     .++||.+|.-.  ..  +.+++...+ ..+...|...++ +|.....+.+..      
T Consensus       112 Iga~~~~n~~ll~~~a~-----~~kPV~lk~G~--~~--t~~e~~~Av-~~i~~~Gn~~i~L~~RG~~~~~~y~------  175 (262)
T 1zco_A          112 IGARNSQNFELLKEVGK-----VENPVLLKRGM--GN--TIQELLYSA-EYIMAQGNENVILCERGIRTFETAT------  175 (262)
T ss_dssp             ECGGGTTCHHHHHHHTT-----SSSCEEEECCT--TC--CHHHHHHHH-HHHHTTTCCCEEEEECCBCCSCCSS------
T ss_pred             ECcccccCHHHHHHHHh-----cCCcEEEecCC--CC--CHHHHHHHH-HHHHHCCCCeEEEEECCCCCCCCcC------
Confidence            57888999888666544     58999998643  21  345555443 455678875554 462211111111      


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEc----cCCCC-H-HHHHHHHHcCCCEEEecHHh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLN----GGINT-V-DEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~n----GdI~s-~-eda~~~l~~g~DgVmIGRga  145 (282)
                      ...+++..+..+++. .++||++.    +|... . .-+......|+||+||=+-.
T Consensus       176 ~~~v~L~ai~~lk~~-~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~  230 (262)
T 1zco_A          176 RFTLDISAVPVVKEL-SHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP  230 (262)
T ss_dssp             SSBCCTTHHHHHHHH-BSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             hhhcCHHHHHHHHhh-hCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence            112344555556554 37898653    22222 1 22334445899999998653

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=89.76  E-value=4.3  Score=34.77  Aligned_cols=87  Identities=17%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             HHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 023442           31 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD  110 (282)
Q Consensus        31 iv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~  110 (282)
                      +++.+++.   |+..=+|.  ++.++..++    ++.+.+.|++.|.+--++..               ..+.+++++++
T Consensus        10 ~~~~l~~~---~ii~vir~--~~~~~~~~~----~~al~~gGv~~iel~~k~~~---------------~~~~i~~l~~~   65 (224)
T 1vhc_A           10 IIEKLREL---KIVPVIAL--DNADDILPL----ADTLAKNGLSVAEITFRSEA---------------AADAIRLLRAN   65 (224)
T ss_dssp             HHHHHHHH---CEEEEECC--SSGGGHHHH----HHHHHHTTCCEEEEETTSTT---------------HHHHHHHHHHH
T ss_pred             HHHHHHHC---CeEEEEeC--CCHHHHHHH----HHHHHHcCCCEEEEeccCch---------------HHHHHHHHHHh
Confidence            44445443   45444674  332333333    34456899999999765420               14566677777


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++++- ++.|-+.+.++++.+++.|+|+|+.+
T Consensus        66 ~~~l~-vgaGtvl~~d~~~~A~~aGAd~v~~p   96 (224)
T 1vhc_A           66 RPDFL-IAAGTVLTAEQVVLAKSSGADFVVTP   96 (224)
T ss_dssp             CTTCE-EEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred             CcCcE-EeeCcEeeHHHHHHHHHCCCCEEEEC
Confidence            76654 56667889999999999999999988

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=89.74  E-value=0.26  Score=42.44  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=47.1

Q ss_pred             HhCCCCEEEEec-CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHS-RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~-Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|++.+.+|. +.....|...      ++.....+++...  .+++|...||| +++++..+.+.|+|.+.+||++..
T Consensus       131 ~~~~~~~~v~~~a~~~~~~Gvv~------s~~e~~~ir~~~~--~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~  201 (221)
T 3exr_A          131 LDAGISQAIYHQSRDALLAGETW------GEKDLNKVKKLIE--MGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITE  201 (221)
T ss_dssp             HHTTCCEEEEECCHHHHHHTCCC------CHHHHHHHHHHHH--HTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHHT
T ss_pred             HcCCHHHHHHHHHHhcCCCcccc------CHHHHHHHHHhhc--CCceEEEECCC-CHHHHHHHHHCCCCEEEECchhhC
Confidence            357899988883 3222234210      1111223333332  36889999999 778888777799999999999876


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      .+.
T Consensus       202 a~d  204 (221)
T 3exr_A          202 AKN  204 (221)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            554

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=89.24  E-value=0.53  Score=43.79  Aligned_cols=44  Identities=14%  Similarity=0.244  Sum_probs=36.8

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      |...|+.+.++++. .++||+.-| |.++++++.+.+.|+|+|.++
T Consensus       210 p~~~~~~i~~i~~~-~~~Pv~vkg-v~t~e~a~~a~~aGad~I~vs  253 (380)
T 1p4c_A          210 ASFNWEALRWLRDL-WPHKLLVKG-LLSAEDADRCIAEGADGVILS  253 (380)
T ss_dssp             TTCCHHHHHHHHHH-CCSEEEEEE-ECCHHHHHHHHHTTCSEEEEC
T ss_pred             ccccHHHHHHHHHh-cCCCEEEEe-cCcHHHHHHHHHcCCCEEEEc
Confidence            45568888888776 489998764 899999999999999999993

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=89.09  E-value=3.1  Score=36.94  Aligned_cols=58  Identities=10%  Similarity=0.116  Sum_probs=42.4

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK   82 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt   82 (282)
                      .-..+.+...++.|...+++||++.+-.|+..  +.++..+.+. .+.++|+.++.+-+..
T Consensus        58 ~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~--~~~~~~~~v~-~l~~aGaagv~iED~~  115 (275)
T 2ze3_A           58 TLTRDEMGREVEAIVRAVAIPVNADIEAGYGH--APEDVRRTVE-HFAALGVAGVNLEDAT  115 (275)
T ss_dssp             SSCHHHHHHHHHHHHHHCSSCEEEECTTCSSS--SHHHHHHHHH-HHHHTTCSEEEEECBC
T ss_pred             CCCHHHHHHHHHHHHhhcCCCEEeecCCCCCC--CHHHHHHHHH-HHHHcCCcEEEECCCc
Confidence            44567777888888888899999999999753  2334445444 4457999999997643

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=89.07  E-value=2.5  Score=35.22  Aligned_cols=82  Identities=11%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce-EEE
Q 023442           40 NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT-FTL  118 (282)
Q Consensus        40 ~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ip-Vi~  118 (282)
                      ..|+..=+|. . +   .+++.+. ++.+.+.|++.|.+.-.+.        +       ..+.+.++.+.+ ++| +++
T Consensus         6 ~~~i~~~i~~-~-d---~~~~~~~-~~~~~~~G~~~i~l~~~~~--------~-------~~~~i~~i~~~~-~~~l~vg   63 (212)
T 2v82_A            6 KLPLIAILRG-I-T---PDEALAH-VGAVIDAGFDAVEIPLNSP--------Q-------WEQSIPAIVDAY-GDKALIG   63 (212)
T ss_dssp             SSCEEEECTT-C-C---HHHHHHH-HHHHHHHTCCEEEEETTST--------T-------HHHHHHHHHHHH-TTTSEEE
T ss_pred             CCCEEEEEeC-C-C---HHHHHHH-HHHHHHCCCCEEEEeCCCh--------h-------HHHHHHHHHHhC-CCCeEEE
Confidence            4566655552 2 2   2344443 3456688999998854321        0       134555665543 344 457


Q ss_pred             ccCCCCHHHHHHHHHcCCCEEEecH
Q 023442          119 NGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus       119 nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .|.+.+.+++..+++.|+|+|.+|.
T Consensus        64 ~g~~~~~~~i~~a~~~Gad~V~~~~   88 (212)
T 2v82_A           64 AGTVLKPEQVDALARMGCQLIVTPN   88 (212)
T ss_dssp             EECCCSHHHHHHHHHTTCCEEECSS
T ss_pred             eccccCHHHHHHHHHcCCCEEEeCC
Confidence            7889999999999999999998764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=89.05  E-value=0.23  Score=47.92  Aligned_cols=65  Identities=17%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCC-ceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPD-LTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~-ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+.+.|++.+.+|...    |..  .      --++.+..+.+..++ +||+ .|+|.|.++++.+.+.|+|+|.+|.+
T Consensus       249 ~l~e~gv~~l~Vd~~~----g~~--~------~~~~~i~~lk~~~~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~Vg~~  314 (503)
T 1me8_A          249 ALVEAGADVLCIDSSD----GFS--E------WQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGIG  314 (503)
T ss_dssp             HHHHHTCSEEEECCSC----CCS--H------HHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHhhhccceEEeccc----Ccc--c------chhhHHHHHHHhCCCCceEe-eccccCHHHHHHHHHhCCCeEEeccc
Confidence            3456799999998642    211  0      015556556555456 7877 59999999999999999999988764

>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1

Probab=88.95  E-value=5.9  Score=36.06  Aligned_cols=44  Identities=7%  Similarity=0.055  Sum_probs=34.5

Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      +++-+++...++.+. .++||.+.=.+.|.+|+.++++ ..+|.|+
T Consensus       223 ~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~  267 (370)
T 2chr_A          223 VGRENTQALRRLSDN-NRVAIMADESLSTLASAFDLARDRSVDVFS  267 (370)
T ss_dssp             SCSSCHHHHHHHHHH-CSSEEEESSSCCSHHHHHHHHTTTCCSEEC
T ss_pred             CChhhhhhhhHHhhh-ccCCccCCccCCCHHHHHHHHHcCCCcEEE
Confidence            344457777777765 5899998888999999999998 5678663

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=88.42  E-value=4  Score=38.04  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEE-EecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFI-IHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~-VH~Rt~~~~G~~~ad~~~   95 (282)
                      .||..+.+.+++..    +. .+++||.+|.-.  .  .+.+|+... +..+.+.|..-|+ +|..+..|... +.    
T Consensus       231 Igs~~~~n~~LL~~----~a-~~gkPVilk~G~--~--~t~~e~~~A-ve~i~~~Gn~~i~L~~rG~s~yp~~-~~----  295 (385)
T 3nvt_A          231 IGARNMQNFELLKA----AG-RVDKPILLKRGL--S--ATIEEFIGA-AEYIMSQGNGKIILCERGIRTYEKA-TR----  295 (385)
T ss_dssp             ECGGGTTCHHHHHH----HH-TSSSCEEEECCT--T--CCHHHHHHH-HHHHHTTTCCCEEEEECCBCCSCCS-SS----
T ss_pred             ECcccccCHHHHHH----HH-ccCCcEEEecCC--C--CCHHHHHHH-HHHHHHcCCCeEEEEECCCCCCCCC-Cc----
Confidence            47888999866544    33 358999999643  2  234555543 3456678885454 56435443211 11    


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEc----cCCCCH--HHHHHHHHcCCCEEEecH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLN----GGINTV--DEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~n----GdI~s~--eda~~~l~~g~DgVmIGR  143 (282)
                       ..+++..+..+++.+ ++||+..    +|-...  .-+..+...||||+||=+
T Consensus       296 -~~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~  347 (385)
T 3nvt_A          296 -NTLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV  347 (385)
T ss_dssp             -SBCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred             -cccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence             123455565665543 7898653    121111  234445558999999975

>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1

Probab=88.36  E-value=3.1  Score=38.49  Aligned_cols=44  Identities=14%  Similarity=0.134  Sum_probs=34.9

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ++-+++...++.+. .++||.+.-.+.|.+|+.++++ ..+|.|.+
T Consensus       237 ~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i  281 (393)
T 1wuf_A          237 GTKDFVDHAWLQKQ-LKTRICLDENIRSVKDVEQAHSIGSCRAINL  281 (393)
T ss_dssp             CSSCSHHHHHHHTT-CSSEEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CCcCHHHHHHHHHh-CCCCEEECCCcCCHHHHHHHHHhCCCCEEEe
Confidence            34456767777664 5899999999999999999998 56888766

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=88.32  E-value=6.5  Score=35.22  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=42.1

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK   82 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt   82 (282)
                      .-..+.+...++.|...++.||++.+-.|+..  +.+.+.+.+. .+.++|++.|.+-+..
T Consensus        60 ~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~--~~~~~~~~v~-~l~~aGa~gv~iEd~~  117 (295)
T 1xg4_A           60 ISTLDDVLTDIRRITDVCSLPLLVDADIGFGS--SAFNVARTVK-SMIKAGAAGLHIEDQV  117 (295)
T ss_dssp             CSCHHHHHHHHHHHHHHCCSCEEEECTTCSSS--SHHHHHHHHH-HHHHHTCSEEEEECBC
T ss_pred             CCCHHHHHHHHHHHHhhCCCCEEecCCcccCC--CHHHHHHHHH-HHHHcCCeEEEECCCC
Confidence            34566777888888888899999999999752  2334455444 4557999999997643

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=88.13  E-value=5.4  Score=34.17  Aligned_cols=91  Identities=13%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYA  106 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~  106 (282)
                      ...++++.+.+.   |+..=+|.  ++.+...++    ++.+.+.|++.|.+.-++..               ..+.+.+
T Consensus        15 ~~~~~~~~l~~~---~ii~V~r~--~~~~~~~~~----~~al~~gGv~~iel~~k~~~---------------~~~~i~~   70 (225)
T 1mxs_A           15 KAARIDAICEKA---RILPVITI--AREEDILPL----ADALAAGGIRTLEVTLRSQH---------------GLKAIQV   70 (225)
T ss_dssp             HHHHHHHHHHHH---SEEEEECC--SCGGGHHHH----HHHHHHTTCCEEEEESSSTH---------------HHHHHHH
T ss_pred             hHHHHHHHHHHC---CEEEEEeC--CCHHHHHHH----HHHHHHCCCCEEEEecCCcc---------------HHHHHHH
Confidence            355566666554   45444663  232333333    34456899999999765321               1455666


Q ss_pred             HHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          107 LLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       107 l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++++++++. ++.|-+.+.+++..+++.|+|+|..|
T Consensus        71 l~~~~~~~~-igagtvl~~d~~~~A~~aGAd~v~~p  105 (225)
T 1mxs_A           71 LREQRPELC-VGAGTVLDRSMFAAVEAAGAQFVVTP  105 (225)
T ss_dssp             HHHHCTTSE-EEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred             HHHhCcccE-EeeCeEeeHHHHHHHHHCCCCEEEeC
Confidence            777777665 46667999999999999999999987

>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A

Probab=88.12  E-value=2.7  Score=38.49  Aligned_cols=43  Identities=9%  Similarity=0.043  Sum_probs=34.2

Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgV  139 (282)
                      +++-+++...++.+. .++||.+.=.+.|..|+.++++ ..+|.|
T Consensus       223 ~~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~i  266 (378)
T 4hpn_A          223 VVPEQLDAYARVRAG-QPIPVAGGETWHGRYGMWQALSAGAVDIL  266 (378)
T ss_dssp             SCTTCHHHHHHHHHH-SSSCEEECTTCCHHHHHHHHHHTTCCSEE
T ss_pred             CCccchhhhHHHHhh-CCceeeCCcCccchHhHHHHHHcCCCCEE
Confidence            344457777777765 5899999889999999999998 668876

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=87.75  E-value=1.3  Score=39.26  Aligned_cols=112  Identities=14%  Similarity=0.118  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC--cccCCCCcCCcCCCCCc-----
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPPL-----   99 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt--~~~~G~~~ad~~~i~~~-----   99 (282)
                      .+.+.++.+++.-...+..=+-.|+.+.+   .+.+ +.+.++++|+|.|.+---.  ..      +|+..|...     
T Consensus         4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~---~~~~-~~~~l~~~GaD~iElgiPfSDP~------aDGp~Iq~a~~~AL   73 (267)
T 3vnd_A            4 RYQAKFAALKAQDKGAFVPFVTIGDPSPE---LSLK-IIQTLVDNGADALELGFPFSDPL------ADGPVIQGANLRSL   73 (267)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEETTSSCHH---HHHH-HHHHHHHTTCSSEEEECCCSCCT------TCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeCCCCCHH---HHHH-HHHHHHHcCCCEEEECCCCCCCC------CCCHHHHHHHHHHH
Confidence            35566666665434444444446665433   3333 3456789999999886211  11      122111111     


Q ss_pred             --------cHHHHHHHHhcCCCceEEEccCCCC-----HHHH-HHHHHcCCCEEEecHHhhhC
Q 023442          100 --------KYEYYYALLRDFPDLTFTLNGGINT-----VDEV-NAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       100 --------~~~~i~~l~~~~~~ipVi~nGdI~s-----~eda-~~~l~~g~DgVmIGRgal~n  148 (282)
                              -++.+.++.+..+++||+.-|-.+.     .+.. +++.+.|+|||.+.--.+..
T Consensus        74 ~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee  136 (267)
T 3vnd_A           74 AAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE  136 (267)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG
T ss_pred             HcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh
Confidence                    1455566655446899988654321     2433 34444899999996444433

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=87.73  E-value=2.4  Score=39.14  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ...|+.+..+++. .++||+.-| |.++++++.+.+.|+|+|.+
T Consensus       215 ~~~~~~i~~lr~~-~~~PvivK~-v~~~e~a~~a~~~Gad~I~v  256 (368)
T 2nli_A          215 KISPRDIEEIAGH-SGLPVFVKG-IQHPEDADMAIKRGASGIWV  256 (368)
T ss_dssp             BCCHHHHHHHHHH-SSSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             hhhHHHHHHHHHH-cCCCEEEEc-CCCHHHHHHHHHcCCCEEEE
Confidence            4568888888765 489998764 68999999999999999988

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=86.91  E-value=3  Score=37.57  Aligned_cols=110  Identities=14%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||..+++.+++.++    . .+++||.+|.-...    +.+|+... +..+.+.|.+.|++--|+-.| +.   ++   
T Consensus       137 IgA~~~~n~~LLr~v----a-~~gkPVilK~Gms~----t~~ei~~a-ve~i~~~Gn~~iiL~erg~~y-~~---~~---  199 (298)
T 3fs2_A          137 IPAFLCRQTDLLIAA----A-RTGRVVNVKKGQFL----APWDMKNV-LAKITESGNPNVLATERGVSF-GY---NT---  199 (298)
T ss_dssp             ECGGGTTCHHHHHHH----H-HTTSEEEEECCTTC----CGGGHHHH-HHHHHTTTCCCEEEEECCEEC-SS---SC---
T ss_pred             ECccccCCHHHHHHH----H-ccCCcEEEeCCCCC----CHHHHHHH-HHHHHHcCCCeEEEEECCCCC-CC---CC---
Confidence            588899999975553    2 35899999965421    12233332 334567888777764444333 21   11   


Q ss_pred             CCccHHHHHHHHhcCCCceEEEc---------------cCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                      .-+++..+..+++ + ++||+..               ||...  +.-+..+...||||+||=+-.
T Consensus       200 ~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~  263 (298)
T 3fs2_A          200 LVSDMRALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHE  263 (298)
T ss_dssp             EECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred             CccCHHHHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecC
Confidence            0123455555554 4 8999883               22111  233444555899999986543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=86.84  E-value=1.9  Score=38.26  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC--cccCCCCcCCcCCCCC------
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK--ALLNGISPAENRTIPP------   98 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt--~~~~G~~~ad~~~i~~------   98 (282)
                      .+.+.++.+++.-...+..=+-.|+.+.+   ...+ +.+.++++|+|.|.+---.  ..      +|+..|..      
T Consensus         6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~---~~~~-~~~~l~~~GaD~iElGiPfSDP~------aDGpvIq~a~~rAL   75 (271)
T 3nav_A            6 RYQALFQRLSAAQQGAFVPFVTIGDPNPE---QSLA-IMQTLIDAGADALELGMPFSDPL------ADGPTIQGANLRAL   75 (271)
T ss_dssp             HHHHHHHHHHHTTBCEEEEEEETTSSCHH---HHHH-HHHHHHHTTCSSEEEECCCCCGG------GCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeCCCCCHH---HHHH-HHHHHHHcCCCEEEECCCCCCCC------CCCHHHHHHHHHHH
Confidence            35566677665433344444456765533   3333 3456788999999985321  11      12111110      


Q ss_pred             ---c----cHHHHHHHHhcCCCceEEEccCCC-----CHHH-HHHHHHcCCCEEEec
Q 023442           99 ---L----KYEYYYALLRDFPDLTFTLNGGIN-----TVDE-VNAALRKGAHHVMVG  142 (282)
Q Consensus        99 ---~----~~~~i~~l~~~~~~ipVi~nGdI~-----s~ed-a~~~l~~g~DgVmIG  142 (282)
                         +    -++.+.++.++.+++||+.-|-.+     ..+. ++++.+.|+|||.+.
T Consensus        76 ~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip  132 (271)
T 3nav_A           76 AAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA  132 (271)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred             HcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence               0    145566666555789998866432     2243 344445899999995

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=86.79  E-value=6.2  Score=33.45  Aligned_cols=87  Identities=14%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             HHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc
Q 023442           31 AMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD  110 (282)
Q Consensus        31 iv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~  110 (282)
                      +++.+.+.   |+..=+|.  ++.++..++    ++.+.+.|++.|.+.-++..               ..+.+.+++++
T Consensus         9 ~~~~l~~~---~~i~v~r~--~~~~~~~~~----~~al~~gGv~~iel~~k~~~---------------~~~~i~~l~~~   64 (214)
T 1wbh_A            9 AESILTTG---PVVPVIVV--KKLEHAVPM----AKALVAGGVRVLNVTLRTEC---------------AVDAIRAIAKE   64 (214)
T ss_dssp             HHHHHHSC---SEEEEECC--SSGGGHHHH----HHHHHHTTCCEEEEESCSTT---------------HHHHHHHHHHH
T ss_pred             HHHHHHHC---CEEEEEEC--CCHHHHHHH----HHHHHHcCCCEEEEeCCChh---------------HHHHHHHHHHH
Confidence            44555443   55444664  222333333    34456899999999865421               14566667777


Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++++ +++.|-+.+.++++.+++.|+|+|..|
T Consensus        65 ~~~~-~vgagtvi~~d~~~~A~~aGAd~v~~p   95 (214)
T 1wbh_A           65 VPEA-IVGAGTVLNPQQLAEVTEAGAQFAISP   95 (214)
T ss_dssp             CTTS-EEEEESCCSHHHHHHHHHHTCSCEEES
T ss_pred             CcCC-EEeeCEEEEHHHHHHHHHcCCCEEEcC
Confidence            7665 456677999999999999999999988

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=86.74  E-value=16  Score=32.34  Aligned_cols=76  Identities=7%  Similarity=-0.032  Sum_probs=50.5

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCC-CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIG-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G-~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      .-..+.+..-+++|+..+ +.||.+.+-.| + .  +.++.++.+.+++ ++|++++.+-+...                
T Consensus        71 ~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY-~--s~~~a~~~a~rl~-kaGa~aVklEdg~~----------------  130 (275)
T 3vav_A           71 PVTLDDIAYHTACVARAQPRALIVADLPFGTY-G--TPADAFASAVKLM-RAGAQMVKFEGGEW----------------  130 (275)
T ss_dssp             TCCHHHHHHHHHHHHHTCCSSEEEEECCTTSC-S--SHHHHHHHHHHHH-HTTCSEEEEECCGG----------------
T ss_pred             ccCHHHHHHHHHHHHhcCCCCCEEEecCCCCC-C--CHHHHHHHHHHHH-HcCCCEEEECCchh----------------
Confidence            344566677778888877 58999999875 6 2  3345556555555 46999999887421                


Q ss_pred             cHHHHHHHHhcCCCceEEEc
Q 023442          100 KYEYYYALLRDFPDLTFTLN  119 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~n  119 (282)
                      ..+.++.+.+  ..|||++.
T Consensus       131 ~~~~i~~l~~--~GIpv~gH  148 (275)
T 3vav_A          131 LAETVRFLVE--RAVPVCAH  148 (275)
T ss_dssp             GHHHHHHHHH--TTCCEEEE
T ss_pred             HHHHHHHHHH--CCCCEEEe
Confidence            0345666655  37888863

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=86.74  E-value=11  Score=33.54  Aligned_cols=58  Identities=7%  Similarity=-0.044  Sum_probs=38.0

Q ss_pred             ccCCHHHHHHHHHHHhhcCCc-cEEEEecCCCCCC-CcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442           21 LMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVDDH-DSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~d~~-~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      +.-..+.+...+++|+..++. +|.+.+-  +-.. .+.++.++.+.+++ ++|++++.+-+.
T Consensus        58 ~~vTldemi~h~~aV~r~~~~~~vvaD~p--fgsy~~s~~~a~~na~rl~-kaGa~aVklEdg  117 (275)
T 1o66_A           58 LPVSLRDMCYHTECVARGAKNAMIVSDLP--FGAYQQSKEQAFAAAAELM-AAGAHMVKLEGG  117 (275)
T ss_dssp             TTCCHHHHHHHHHHHHHHCSSSEEEEECC--TTSSSSCHHHHHHHHHHHH-HTTCSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHhhCCCCeEEEECC--CCCccCCHHHHHHHHHHHH-HcCCcEEEECCc
Confidence            444567778888888888775 5666644  4222 23455565555555 499999999874

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=86.53  E-value=1.1  Score=38.65  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH-HHHHHHHHcCCCEEEec
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV-DEVNAALRKGAHHVMVG  142 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~-eda~~~l~~g~DgVmIG  142 (282)
                      ++++++++|++.+.+.+..                  -+.+..+.+..++ -++..+||.-- .+..++++.|+|.+.||
T Consensus       127 ~a~~a~~~g~~GvV~sat~------------------p~e~~~ir~~~~~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVG  187 (222)
T 4dbe_A          127 IKNVIREISPKGIVVGGTK------------------LDHITQYRRDFEK-MTIVSPGMGSQGGSYGDAVCAGADYEIIG  187 (222)
T ss_dssp             HHHHHHHHCCSEEEECTTC------------------HHHHHHHHHHCTT-CEEEECCBSTTSBCTTHHHHHTCSEEEEC
T ss_pred             HHHHHHHhCCCEEEECCCC------------------HHHHHHHHHhCCC-CEEEcCCcccCccCHHHHHHcCCCEEEEC
Confidence            5667788999988876521                  0223334444455 46677887531 14555566899999999


Q ss_pred             HHhhhCCc
Q 023442          143 RAAYQNPW  150 (282)
Q Consensus       143 Rgal~nP~  150 (282)
                      |+++..+.
T Consensus       188 R~I~~A~d  195 (222)
T 4dbe_A          188 RSIYNAGN  195 (222)
T ss_dssp             HHHHTSSS
T ss_pred             HHhcCCCC
Confidence            99988766

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=86.42  E-value=5.2  Score=35.87  Aligned_cols=107  Identities=8%  Similarity=0.000  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHhhcC-CccEEEEecCCCC-CCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANT-NVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d-~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      ...+...+-|++++++. +.++.|--|.--. ....+++.++. ++.++++|+|.|.+++....                
T Consensus       133 ~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R-a~ay~eAGAd~i~~e~~~~~----------------  195 (295)
T 1s2w_A          133 ADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKR-AEAYRNAGADAILMHSKKAD----------------  195 (295)
T ss_dssp             CCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHH-HHHHHHTTCSEEEECCCSSS----------------
T ss_pred             cCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHH-HHHHHHcCCCEEEEcCCCCC----------------
Confidence            33444444455555543 3344444453111 11124555554 45678999999999963210                


Q ss_pred             HHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+.++.+... .+|+++|-.-+..-+..++-+.|+.-|.+|-.++
T Consensus       196 ~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~~v~~~~~~~  242 (295)
T 1s2w_A          196 PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNL  242 (295)
T ss_dssp             SHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCCEEEECSHHH
T ss_pred             HHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCcEEEEChHHH
Confidence            233445555431 3899998432111135556668999999985554

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=86.41  E-value=2.8  Score=38.11  Aligned_cols=101  Identities=8%  Similarity=-0.006  Sum_probs=59.5

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCC--CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDH--DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~--~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      +...+...+-|++++++. +.++.|--|.  |..  ..+++.++. ++.++++|+|.|.+++-+.               
T Consensus       152 L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt--da~a~~gl~~ai~R-a~Ay~eAGAd~i~~e~~~~---------------  213 (318)
T 1zlp_A          152 VVPAEEHALKIAAAREAIGDSDFFLVART--DARAPHGLEEGIRR-ANLYKEAGADATFVEAPAN---------------  213 (318)
T ss_dssp             BCCHHHHHHHHHHHHHHHTTSCCEEEEEE--CTHHHHHHHHHHHH-HHHHHHTTCSEEEECCCCS---------------
T ss_pred             cCCHHHHHHHHHHHHHhcccCCcEEEEee--HHhhhcCHHHHHHH-HHHHHHcCCCEEEEcCCCC---------------
Confidence            444444455556655543 3345454453  211  113455554 4567899999999998421               


Q ss_pred             ccHHHHHHHHhcCCCceEEEc---c---CCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           99 LKYEYYYALLRDFPDLTFTLN---G---GINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~n---G---dI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                        .+.+.++.+.. ++|+.+|   |   ...|   ..++-+.|+.-|.+|-.++
T Consensus       214 --~e~~~~i~~~l-~~P~lan~~~~g~~~~~~---~~eL~~lGv~~v~~~~~~~  261 (318)
T 1zlp_A          214 --VDELKEVSAKT-KGLRIANMIEGGKTPLHT---PEEFKEMGFHLIAHSLTAV  261 (318)
T ss_dssp             --HHHHHHHHHHS-CSEEEEEECTTSSSCCCC---HHHHHHHTCCEEEECSHHH
T ss_pred             --HHHHHHHHHhc-CCCEEEEeccCCCCCCCC---HHHHHHcCCeEEEEchHHH
Confidence              35566777764 7999665   3   2344   4445557999999986554

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=86.28  E-value=2.2  Score=38.29  Aligned_cols=78  Identities=19%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+.|-|+.....+..+       +.+.+...++. ...+||| +.|+..+.+-++....   .|+|+||
T Consensus        44 ~~li~~Gv~gl~v~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavl  116 (304)
T 3cpr_A           44 AYLVDKGLDSLVLAGTTGESPTTTAAE-------KLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLL  116 (304)
T ss_dssp             HHHHHTTCCEEEESSTTTTTTTSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            344578999999999876433332211       12223333332 1368986 5666555444443332   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       117 v~~P~y~~~~  126 (304)
T 3cpr_A          117 VVTPYYSKPS  126 (304)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977776664

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=86.19  E-value=7.3  Score=34.80  Aligned_cols=114  Identities=13%  Similarity=0.063  Sum_probs=65.8

Q ss_pred             cCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-ccCCCCcCCcCCCCCcc
Q 023442           22 MLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK  100 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-~~~G~~~ad~~~i~~~~  100 (282)
                      .-..+.+...++.|...+++||++.+-.|+.+   .++..+.+. .+.++|++++.+-+... .-.|..  .+. +-+..
T Consensus        64 ~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~---~~~~~~~v~-~l~~aGa~gv~iED~~~pKrcgh~--~gk-l~~~~  136 (287)
T 3b8i_A           64 LITLSEFVEQATRIGRVARLPVIADADHGYGN---ALNVMRTVV-ELERAGIAALTIEDTLLPAQFGRK--STD-LICVE  136 (287)
T ss_dssp             CSCHHHHHHHHHHHHTTCSSCEEEECTTCSSS---HHHHHHHHH-HHHHHTCSEEEEECBCCSCCTTTC--TTC-BCCHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC---HHHHHHHHH-HHHHhCCeEEEEcCCCCccccCCC--CCC-ccCHH
Confidence            34567778888899888999999999998753   344555544 44579999999976431 111221  112 22221


Q ss_pred             --HHHHHHHHhcC--CCceEEEccCC--C----CHHHHHHHHHcCCCEEEec
Q 023442          101 --YEYYYALLRDF--PDLTFTLNGGI--N----TVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       101 --~~~i~~l~~~~--~~ipVi~nGdI--~----s~eda~~~l~~g~DgVmIG  142 (282)
                        .+.|+.+++..  ++.-|++=-|-  .    ..++++.+.+.|||+|++=
T Consensus       137 e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e  188 (287)
T 3b8i_A          137 EGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLV  188 (287)
T ss_dssp             HHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEec
Confidence              12233333322  34455554333  1    2333444444899999884

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=86.09  E-value=2.5  Score=38.01  Aligned_cols=80  Identities=9%  Similarity=-0.007  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEE-EccCCCCHHHHHHHHH--
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFT-LNGGINTVDEVNAALR--  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi-~nGdI~s~eda~~~l~--  133 (282)
                      ++.+.+. .+.+.+.|++.|.+-|-|......+...       +.+.+...++...++||| +.|.. |.+++.++.+  
T Consensus        28 ~~~l~~l-v~~li~~Gv~Gl~v~GtTGE~~~Lt~~E-------r~~v~~~~v~~~grvpViaGvg~~-~t~~ai~la~~A   98 (313)
T 3dz1_A           28 DVSIDRL-TDFYAEVGCEGVTVLGILGEAPKLDAAE-------AEAVATRFIKRAKSMQVIVGVSAP-GFAAMRRLARLS   98 (313)
T ss_dssp             HHHHHHH-HHHHHHTTCSEEEESTGGGTGGGSCHHH-------HHHHHHHHHHHCTTSEEEEECCCS-SHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHCCCCEEEeCccCcChhhCCHHH-------HHHHHHHHHHHcCCCcEEEecCCC-CHHHHHHHHHHH
Confidence            4344333 3445579999999999775433222111       122333334433468987 45555 4444444432  


Q ss_pred             --cCCCEEEecHHh
Q 023442          134 --KGAHHVMVGRAA  145 (282)
Q Consensus       134 --~g~DgVmIGRga  145 (282)
                        .|+|+||+--..
T Consensus        99 ~~~Gadavlv~~P~  112 (313)
T 3dz1_A           99 MDAGAAGVMIAPPP  112 (313)
T ss_dssp             HHHTCSEEEECCCT
T ss_pred             HHcCCCEEEECCCC
Confidence              799999997543

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=86.06  E-value=1.6  Score=37.90  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             CceEEEccCCCCHH-----------HHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGINTVD-----------EVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~s~e-----------da~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.+++..|||.. +           .+.++++.|+|.+.+||+++..+.
T Consensus       182 ~~~i~v~gGI~~-~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d  229 (245)
T 1eix_A          182 QEFKLVTPGIRP-QGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVD  229 (245)
T ss_dssp             SSSEEEECCBCC-TTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSS
T ss_pred             CCCEEEECCcCC-CCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCC
Confidence            457889999963 3           466677889999999999988665

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=85.97  E-value=1.8  Score=39.24  Aligned_cols=102  Identities=13%  Similarity=0.063  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHhhc---CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           24 DPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~---~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      ..+...+-|++.+++   .+.++.|--|.---....+++.++. ++.+.++|+|.|.+++.+.                 
T Consensus       141 ~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~R-a~ay~eAGAD~ifi~~~~~-----------------  202 (307)
T 3lye_A          141 SRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIER-LRAARDEGADVGLLEGFRS-----------------  202 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHH-HHHHHHTTCSEEEECCCSC-----------------
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHH-HHHHHHCCCCEEEecCCCC-----------------
Confidence            343333334444433   2556666666411001124455554 3456789999999998431                 


Q ss_pred             HHHHHHHHhcCCCceEEEc---cC---CCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          101 YEYYYALLRDFPDLTFTLN---GG---INTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~n---Gd---I~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      -+.+.++++....+||.+|   |+   ..|.   .++-+.|+.-|+.+-.++
T Consensus       203 ~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~---~eL~~lGv~~v~~~~~~~  251 (307)
T 3lye_A          203 KEQAAAAVAALAPWPLLLNSVENGHSPLITV---EEAKAMGFRIMIFSFATL  251 (307)
T ss_dssp             HHHHHHHHHHHTTSCBEEEEETTSSSCCCCH---HHHHHHTCSEEEEETTTH
T ss_pred             HHHHHHHHHHccCCceeEEeecCCCCCCCCH---HHHHHcCCeEEEEChHHH
Confidence            3445566665445777665   33   2344   444446998888775444

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=85.92  E-value=14  Score=32.58  Aligned_cols=101  Identities=11%  Similarity=0.002  Sum_probs=60.9

Q ss_pred             cccCCHHHHHHHHHHHhhcCCc-cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC
Q 023442           20 SLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP   98 (282)
Q Consensus        20 ~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~   98 (282)
                      .+.-..+.+..-+++|+..++. +|.+.+-  +-...+.++.++.+.+++ ++|++++.+-+...               
T Consensus        57 t~~vtldemi~h~~aV~r~~~~~~vvaD~p--fgsy~~~~~a~~~a~rl~-kaGa~aVklEgg~e---------------  118 (264)
T 1m3u_A           57 TLPVTVADIAYHTAAVRRGAPNCLLLADLP--FMAYATPEQAFENAATVM-RAGANMVKIEGGEW---------------  118 (264)
T ss_dssp             STTCCHHHHHHHHHHHHHHCTTSEEEEECC--TTSSSSHHHHHHHHHHHH-HTTCSEEECCCSGG---------------
T ss_pred             CCCcCHHHHHHHHHHHHhhCCCCcEEEECC--CCCcCCHHHHHHHHHHHH-HcCCCEEEECCcHH---------------
Confidence            3444557777778888888765 5666654  422224455666555555 49999998876421               


Q ss_pred             ccHHHHHHHHhcCCCceEEE-----------ccCC----CCHHHHHHHH-------HcCCCEEEe
Q 023442           99 LKYEYYYALLRDFPDLTFTL-----------NGGI----NTVDEVNAAL-------RKGAHHVMV  141 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~-----------nGdI----~s~eda~~~l-------~~g~DgVmI  141 (282)
                       .-+.++.+.+  ..|||++           .||.    ++.+.+.+++       +.|||+|.+
T Consensus       119 -~~~~I~al~~--agipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivl  180 (264)
T 1m3u_A          119 -LVETVQMLTE--RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVL  180 (264)
T ss_dssp             -GHHHHHHHHH--TTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             -HHHHHHHHHH--CCCCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence             1344556655  3788873           4554    2444333333       369999877

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=85.85  E-value=9.3  Score=34.20  Aligned_cols=113  Identities=13%  Similarity=0.168  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-ccCCCCcCCcCCCCCcc--H
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLK--Y  101 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-~~~G~~~ad~~~i~~~~--~  101 (282)
                      .+.+...++.|...+++||++.+-.|+.+   .+.+.+.+ +.+.++|+.+|.+-+... ...|.-+-....+-|..  .
T Consensus        64 ~~em~~~~~~I~~~~~~PviaD~d~Gyg~---~~~v~~~v-~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~  139 (295)
T 1s2w_A           64 WTQVVEVLEFMSDASDVPILLDADTGYGN---FNNARRLV-RKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFA  139 (295)
T ss_dssp             CHHHHHHHHHHHHTCSSCEEEECCSSCSS---HHHHHHHH-HHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEecCCCCCCC---HHHHHHHH-HHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHH
Confidence            34566777888888899999999999753   23455544 445689999999976431 11121000001112221  1


Q ss_pred             HHHHHHHhc--CCCceEEEccCCC-C---HHH----HHHHHHcCCCEEEe
Q 023442          102 EYYYALLRD--FPDLTFTLNGGIN-T---VDE----VNAALRKGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~--~~~ipVi~nGdI~-s---~ed----a~~~l~~g~DgVmI  141 (282)
                      +.|+..+..  ..+.-|++=-|-. .   .++    ++.+.+.|||+|++
T Consensus       140 ~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~  189 (295)
T 1s2w_A          140 LKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILM  189 (295)
T ss_dssp             HHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEE
Confidence            223333322  2345566655543 1   233    33334489999998

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=85.68  E-value=3.6  Score=36.31  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.. ++|+++|.|-.-..+++|.            ++++.++.+ .+++||.--==|.++-++.+....|||+|.+==+
T Consensus        70 A~~~-~~GA~aiSVLTd~~~F~Gs------------~~~L~~vr~-~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a  135 (258)
T 4a29_A           70 AKFM-ERYAVGLSITTEEKYFNGS------------YETLRKIAS-SVSIPILMSDFIVKESQIDDAYNLGADTVLLIVK  135 (258)
T ss_dssp             HHHH-TTTCSEEEEECCSTTTCCC------------HHHHHHHHT-TCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGG
T ss_pred             HHHH-hCCCeEEEEeCCCCCCCCC------------HHHHHHHHH-hcCCCEeeccccccHHHHHHHHHcCCCeeehHHh
Confidence            4444 6899999998765566775            666766654 4689998776688999999988899999977656


Q ss_pred             hhhCCcc
Q 023442          145 AYQNPWY  151 (282)
Q Consensus       145 al~nP~i  151 (282)
                      ++.+..+
T Consensus       136 ~L~~~~l  142 (258)
T 4a29_A          136 ILTEREL  142 (258)
T ss_dssp             GSCHHHH
T ss_pred             hcCHHHH
Confidence            6655443

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=85.60  E-value=13  Score=33.58  Aligned_cols=57  Identities=21%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK   82 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt   82 (282)
                      .-..+.+...++.|...+ ++||.+.+-.|+.+   .+...+.+. .+.++|+.+|.+-+..
T Consensus        82 ~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~---~~~v~~tv~-~l~~aGaagv~iED~~  139 (318)
T 1zlp_A           82 LLTTTEVVEATRRITAAAPNLCVVVDGDTGGGG---PLNVQRFIR-ELISAGAKGVFLEDQV  139 (318)
T ss_dssp             CSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSS---HHHHHHHHH-HHHHTTCCEEEEECBC
T ss_pred             CCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCC---HHHHHHHHH-HHHHcCCcEEEECCCC
Confidence            345667778888888888 99999999999753   344455444 4557999999997643

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=85.49  E-value=2.3  Score=37.95  Aligned_cols=84  Identities=6%  Similarity=0.030  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|...+.+.++.... 
T Consensus        23 ~~~l~~lv-~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A   94 (294)
T 3b4u_A           23 IDAMIAHA-RRCLSNGCDSVTLFGTTGEGCSVGSRE-------RQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEA   94 (294)
T ss_dssp             HHHHHHHH-HHHHHTTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHH
Confidence            33333333 344578999999999876433332111       122233333332 258886 5666554444433332 


Q ss_pred             --cCCCEEEecHHhhhC
Q 023442          134 --KGAHHVMVGRAAYQN  148 (282)
Q Consensus       134 --~g~DgVmIGRgal~n  148 (282)
                        .|+|+||+.-..+..
T Consensus        95 ~~~Gadavlv~~P~y~~  111 (294)
T 3b4u_A           95 LNAGARNILLAPPSYFK  111 (294)
T ss_dssp             HHTTCSEEEECCCCSSC
T ss_pred             HhcCCCEEEEcCCcCCC
Confidence              799999999777766

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=85.41  E-value=3.1  Score=37.33  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEE-ccCCCCHHHHHHHHH---cCCCEE
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTL-NGGINTVDEVNAALR---KGAHHV  139 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~-nGdI~s~eda~~~l~---~g~DgV  139 (282)
                      .+.+.+.|++.|.+-|-|......+..+       +.+.+...++.. ..+|||+ .|...+.+.++....   .|+|+|
T Consensus        41 v~~li~~Gv~Gl~v~GtTGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadav  113 (307)
T 3s5o_A           41 LHKLGTFPFRGFVVQGSNGEFPFLTSSE-------RLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAA  113 (307)
T ss_dssp             HHHHTTSCCSEEEESSGGGTGGGSCHHH-------HHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHcCCCEEEECccccchhhCCHHH-------HHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEE
Confidence            3445689999999999875433232111       122333333432 3689864 565544444433322   799999


Q ss_pred             EecHHhhhC
Q 023442          140 MVGRAAYQN  148 (282)
Q Consensus       140 mIGRgal~n  148 (282)
                      |+--..+..
T Consensus       114 lv~~P~y~~  122 (307)
T 3s5o_A          114 MVVTPCYYR  122 (307)
T ss_dssp             EEECCCTTG
T ss_pred             EEcCCCcCC
Confidence            998666543

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=85.23  E-value=3.1  Score=36.99  Aligned_cols=86  Identities=13%  Similarity=0.041  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHh-CCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH
Q 023442           57 YNQLCDFIYKVSSL-SPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~-~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~  133 (282)
                      .+.+.+.+ +.+.+ .|++.|.+.|-|+.....+...       +.+.+...++. ..++||| +.|+..+.+.++....
T Consensus        23 ~~~l~~lv-~~li~~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~   94 (293)
T 1f6k_A           23 EKGLRQII-RHNIDKMKVDGLYVGGSTGENFMLSTEE-------KKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKY   94 (293)
T ss_dssp             HHHHHHHH-HHHHHTSCCSEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHhhCCCcEEEeCccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHH
Confidence            33343433 34456 8999999999775433332211       12223333322 1368986 5666555444433332


Q ss_pred             ---cCCCEEEecHHhhhCCc
Q 023442          134 ---KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP~  150 (282)
                         .|+|+||+--..+..|.
T Consensus        95 a~~~Gadavlv~~P~y~~~~  114 (293)
T 1f6k_A           95 ATELGYDCLSAVTPFYYKFS  114 (293)
T ss_dssp             HHHHTCSEEEEECCCSSCCC
T ss_pred             HHhcCCCEEEECCCCCCCCC
Confidence               79999999977776664

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=85.11  E-value=2  Score=38.41  Aligned_cols=77  Identities=10%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-C-CceEEE-ccCCCCHHHHHHHHH----cCCCE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-P-DLTFTL-NGGINTVDEVNAALR----KGAHH  138 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~-~ipVi~-nGdI~s~eda~~~l~----~g~Dg  138 (282)
                      +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++.. . ++|||+ .|+. |.+++.++.+    .|+|+
T Consensus        35 ~~li~~Gv~gl~v~GttGE~~~Ls~~E-------r~~v~~~~~~~~~g~rvpviaGvg~~-~t~~ai~la~~a~~~Gada  106 (301)
T 3m5v_A           35 KRQIENGIDAVVPVGTTGESATLTHEE-------HRTCIEIAVETCKGTKVKVLAGAGSN-ATHEAVGLAKFAKEHGADG  106 (301)
T ss_dssp             HHHHHTTCCEEECSSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEEECCCS-SHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCCeEEEeCCCC-CHHHHHHHHHHHHHcCCCE
Confidence            345579999999999775433332111       122233333322 3 589875 5555 4444444432    79999


Q ss_pred             EEecHHhhhCCc
Q 023442          139 VMVGRAAYQNPW  150 (282)
Q Consensus       139 VmIGRgal~nP~  150 (282)
                      ||+--..+..|.
T Consensus       107 vlv~~P~y~~~s  118 (301)
T 3m5v_A          107 ILSVAPYYNKPT  118 (301)
T ss_dssp             EEEECCCSSCCC
T ss_pred             EEEcCCCCCCCC
Confidence            999977777664

>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}

Probab=84.99  E-value=4.4  Score=37.17  Aligned_cols=44  Identities=14%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHH--HHHHHH-cCCCEEEe
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDE--VNAALR-KGAHHVMV  141 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~ed--a~~~l~-~g~DgVmI  141 (282)
                      ++-+|+...++.+. .++||.+.=.+.|..|  +.++++ ..+|.|.+
T Consensus       244 ~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~i  290 (377)
T 2pge_A          244 RQHQWSEMAALCAN-SPLAIALDEELIGLGAEQRSAMLDAIRPQYIIL  290 (377)
T ss_dssp             CSSCHHHHHHHHHH-CSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEE
T ss_pred             CcccHHHHHHHHhh-CCCcEEECCccCCcchHHHHHHHHhCCCCEEEE
Confidence            34457777777765 4799999888888888  678887 67887765

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=84.99  E-value=4.4  Score=36.49  Aligned_cols=99  Identities=9%  Similarity=0.032  Sum_probs=59.9

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.=.++++.+.+.+  ++||.+-+  |- +   ..+.++ +++.++++|+|++-+-.-  .|...+..    
T Consensus        57 GE~~~Ls~eEr~~v~~~~v~~~~grvpViaGv--g~-~---t~~ai~-la~~A~~~Gadavlv~~P--~y~~~s~~----  123 (316)
T 3e96_A           57 SEFYALSLEEAKEEVRRTVEYVHGRALVVAGI--GY-A---TSTAIE-LGNAAKAAGADAVMIHMP--IHPYVTAG----  123 (316)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE--CS-S---HHHHHH-HHHHHHHHTCSEEEECCC--CCSCCCHH----
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEEe--Cc-C---HHHHHH-HHHHHHhcCCCEEEEcCC--CCCCCCHH----
Confidence            4333334555567777776655  58998876  42 2   345554 356678999999998742  22111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-cCCCCHHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-GGINTVDEVNAALR  133 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-GdI~s~eda~~~l~  133 (282)
                         .-++++.++++. .++||+ +| |--.+++.+.++.+
T Consensus       124 ---~l~~~f~~va~a-~~lPiilYn~g~~l~~~~~~~La~  159 (316)
T 3e96_A          124 ---GVYAYFRDIIEA-LDFPSLVYFKDPEISDRVLVDLAP  159 (316)
T ss_dssp             ---HHHHHHHHHHHH-HTSCEEEEECCTTSCTHHHHHHTT
T ss_pred             ---HHHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHc
Confidence               114566677665 368875 67 76678888887765

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=84.77  E-value=2.5  Score=37.68  Aligned_cols=78  Identities=14%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|+..+.+.++....   .|+|+||
T Consensus        28 ~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavl  100 (294)
T 2ehh_A           28 EFHVDNGTDAILVCGTTGESPTLTFEE-------HEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGAL  100 (294)
T ss_dssp             HHHHTTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHCCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            345579999999999876433332111       122233333321 368986 5666555444443332   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       101 v~~P~y~~~s  110 (294)
T 2ehh_A          101 VVVPYYNKPT  110 (294)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977776663

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=84.47  E-value=2.7  Score=37.30  Aligned_cols=76  Identities=17%  Similarity=0.069  Sum_probs=46.5

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIG  142 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++...+ -|.+.|...+.+.++....   .|+|+||+-
T Consensus        26 ~~li~~Gv~gl~v~GttGE~~~Ls~~E-------r~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~   97 (286)
T 2r91_A           26 KNITSKGVDVVFVAGTTGLGPALSLQE-------KMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGAEAVASL   97 (286)
T ss_dssp             HHHHHTTCCEEEETSTTTTGGGSCHHH-------HHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHCCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence            344579999999999876433332111       12233334443334 4567888766555544432   799999999


Q ss_pred             HHhhhC-C
Q 023442          143 RAAYQN-P  149 (282)
Q Consensus       143 Rgal~n-P  149 (282)
                      -..+.. |
T Consensus        98 ~P~y~~~~  105 (286)
T 2r91_A           98 PPYYFPRL  105 (286)
T ss_dssp             CSCSSTTC
T ss_pred             CCcCCCCC
Confidence            877766 5

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=84.41  E-value=3.3  Score=37.02  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|+.....+...       +.+.+...++. ..++||| +.|+..+.+.++.... 
T Consensus        32 ~~~l~~l-v~~li~~Gv~gl~v~GtTGE~~~Ls~eE-------r~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A  103 (301)
T 1xky_A           32 FAKTTKL-VNYLIDNGTTAIVVGGTTGESPTLTSEE-------KVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKA  103 (301)
T ss_dssp             HHHHHHH-HHHHHHTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHH
Confidence            3333333 3345578999999999876433332211       12223333322 1368886 5666555544443332 


Q ss_pred             --cCCCEEEecHHhhhCCc
Q 023442          134 --KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~  150 (282)
                        .|+|+||+--..+..|.
T Consensus       104 ~~~Gadavlv~~P~y~~~s  122 (301)
T 1xky_A          104 TEVGVDAVMLVAPYYNKPS  122 (301)
T ss_dssp             HHTTCSEEEEECCCSSCCC
T ss_pred             HhcCCCEEEEcCCCCCCCC
Confidence              79999999987776663

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=84.40  E-value=7.8  Score=33.15  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCC-CCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDD-HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~-~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.+...++.+++. +.-|++=..+.-.+ .+...+.+..++++..+.|++.+.+.+..                  -+.+
T Consensus       104 ~~l~~~~~~~~~~-g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~------------------~~e~  164 (228)
T 3m47_A          104 DSVRACLNVAEEM-GREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR------------------PERL  164 (228)
T ss_dssp             HHHHHHHHHHHHH-TCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSC------------------HHHH
T ss_pred             HHHHHHHHHHHhc-CCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHH
Confidence            4555566665442 33355422321111 01223445567778889999987765521                  1223


Q ss_pred             HHHHhcCCC-ceEEEccCCCCH-HHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          105 YALLRDFPD-LTFTLNGGINTV-DEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       105 ~~l~~~~~~-ipVi~nGdI~s~-eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .++.+..++ .++ ..+||..- .+. ++++.|+|.+.+||+++..+.
T Consensus       165 ~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~d  210 (228)
T 3m47_A          165 SRLREIIGQDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADN  210 (228)
T ss_dssp             HHHHHHHCSSSEE-EECC----------CGGGTCSEEEECHHHHTSSC
T ss_pred             HHHHHhcCCCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCC
Confidence            333333333 555 56666421 145 556689999999999887555

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=84.39  E-value=2.3  Score=37.60  Aligned_cols=67  Identities=7%  Similarity=0.013  Sum_probs=44.9

Q ss_pred             HHHHHhCCCCEEEEecCC----cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEE
Q 023442           65 YKVSSLSPTRHFIIHSRK----ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHV  139 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt----~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgV  139 (282)
                      ++.+.++|++.|.+-...    ....|...       ....+.+.++++. .++|++.++++.+.++++.+.+.|+|+|
T Consensus        34 a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~-------~~~~~~i~~i~~~-~~~Pvi~~~~~~~~~~~~~~~~aGad~v  104 (297)
T 2zbt_A           34 AVIAEEAGAVAVMALERVPADIRAQGGVAR-------MSDPKIIKEIMAA-VSIPVMAKVRIGHFVEAMILEAIGVDFI  104 (297)
T ss_dssp             HHHHHHHTCSEEEECSSCHHHHHHTTCCCC-------CCCHHHHHHHHTT-CSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred             HHHHHHCCCcEEEeccccchHHHhhcCCcc-------CCCHHHHHHHHHh-cCCCeEEEeccCCHHHHHHHHHCCCCEE
Confidence            345678999998761110    11122110       1125667777664 5899999988888899998888999999

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=84.33  E-value=2.1  Score=38.06  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=45.3

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|+..+.+.++....   .|+|+||
T Consensus        29 ~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavl  101 (291)
T 3a5f_A           29 EWHIKSKTDAIIVCGTTGEATTMTETE-------RKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLL  101 (291)
T ss_dssp             HHHHHTTCCEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEE
Confidence            344578999999999776433332211       122233333321 358886 5666554444433332   7999999


Q ss_pred             ecHHhhhCC
Q 023442          141 VGRAAYQNP  149 (282)
Q Consensus       141 IGRgal~nP  149 (282)
                      +--..+..|
T Consensus       102 v~~P~y~~~  110 (291)
T 3a5f_A          102 VITPYYNKT  110 (291)
T ss_dssp             EECCCSSCC
T ss_pred             EcCCCCCCC
Confidence            997776665

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=84.18  E-value=2.8  Score=36.63  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhcC---CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCC------
Q 023442           28 VGEAMSVIAANT---NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPP------   98 (282)
Q Consensus        28 ~~eiv~~v~~~~---~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~------   98 (282)
                      +.+.++.+++.-   -+|+.   =.|..+   .++..+ +++.++++|+|.|.+-.-.   +.. -+|+..|..      
T Consensus         4 ~~~~f~~~~~~~~~~~i~~i---~~g~p~---~~~~~~-~~~~l~~~G~D~IElG~P~---sdP-~adgp~i~~a~~~al   72 (262)
T 2ekc_A            4 ISDKFTELKEKREKALVSYL---MVGYPD---YETSLK-AFKEVLKNGTDILEIGFPF---SDP-VADGPTIQVAHEVAL   72 (262)
T ss_dssp             HHHHHHHHHHHTBCEEEEEE---ETTSSC---HHHHHH-HHHHHHHTTCSEEEEECCC---SCC-TTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEEe---cCCCCC---hHHHHH-HHHHHHHcCCCEEEECCCC---CCc-ccccHHHHHHHHHHH
Confidence            445555554331   23433   256544   233333 4567789999999994311   000 011111110      


Q ss_pred             ---c----cHHHHHHHHhcCCCceEEEccCCCC------HHHHHHHHHcCCCEEEec
Q 023442           99 ---L----KYEYYYALLRDFPDLTFTLNGGINT------VDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        99 ---~----~~~~i~~l~~~~~~ipVi~nGdI~s------~eda~~~l~~g~DgVmIG  142 (282)
                         +    -++.+.++.+..+++|++.-|....      ...++.+.+.|+|||.+.
T Consensus        73 ~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~  129 (262)
T 2ekc_A           73 KNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP  129 (262)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred             HcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence               0    1234566665544899998654321      244555556999999995

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=84.17  E-value=2.5  Score=37.52  Aligned_cols=78  Identities=12%  Similarity=0.052  Sum_probs=46.2

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|+..+.+.++....   .|+|+||
T Consensus        28 ~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavl  100 (289)
T 2yxg_A           28 NFLIENGVSGIVAVGTTGESPTLSHEE-------HKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVL  100 (289)
T ss_dssp             HHHHHTTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHCCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            344578999999999875433332211       122233333321 368986 5676555444443332   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       101 v~~P~y~~~s  110 (289)
T 2yxg_A          101 SITPYYNKPT  110 (289)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977776663

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=84.15  E-value=21  Score=31.77  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK   82 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt   82 (282)
                      ..-..+.+...++.|...+++||++.+-.|+.+   .+...+.+. .+.++|++++.+-+..
T Consensus        56 ~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~---~~~~~~~v~-~l~~aGa~gv~iED~~  113 (290)
T 2hjp_A           56 NILSMSTHLEMMRAIASTVSIPLIADIDTGFGN---AVNVHYVVP-QYEAAGASAIVMEDKT  113 (290)
T ss_dssp             TCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSS---HHHHHHHHH-HHHHHTCSEEEEECBC
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC---HHHHHHHHH-HHHHhCCeEEEEcCCC
Confidence            344567788888999999999999999999753   334455444 4557999999997643

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=84.04  E-value=2.8  Score=37.30  Aligned_cols=84  Identities=17%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+.|-|+.....+...       +.+.+...++...+ -|.+.|...+.+.++....   
T Consensus        19 ~~~l~~lv-~~li~~Gv~gl~~~GttGE~~~Ls~eE-------r~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~   89 (293)
T 1w3i_A           19 KEKLKIHA-ENLIRKGIDKLFVNGTTGLGPSLSPEE-------KLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKD   89 (293)
T ss_dssp             HHHHHHHH-HHHHHTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGG
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHh
Confidence            33333333 344579999999999876433332111       12233333433334 3567888665555544443   


Q ss_pred             cCCCEEEecHHhhhC-C
Q 023442          134 KGAHHVMVGRAAYQN-P  149 (282)
Q Consensus       134 ~g~DgVmIGRgal~n-P  149 (282)
                      .|+|+||+--..+.. |
T Consensus        90 ~Gadavlv~~P~y~~~~  106 (293)
T 1w3i_A           90 FDIVGIASYAPYYYPRM  106 (293)
T ss_dssp             SCCSEEEEECCCSCSSC
T ss_pred             cCCCEEEEcCCCCCCCC
Confidence            799999999887766 5

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=83.95  E-value=7.2  Score=33.54  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAY  146 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal  146 (282)
                      +....+|++-+-..    .|.+.       ..+|+.+..+..   +.|++..||+ |++.+.++++ .+..||=+..|.=
T Consensus       142 ~~~~~~d~~LlDs~----GGtG~-------~fDW~~~~~~~~---~~p~iLAGGL-~peNV~~Ai~~~~P~gVDVsSGVE  206 (228)
T 4aaj_A          142 ISRYNADMVLLDTG----AGSGK-------LHDLRVSSLVAR---KIPVIVAGGL-NAENVEEVIKVVKPYGVDVSSGVE  206 (228)
T ss_dssp             HHHSCCSEEEEEC------------------CCCHHHHHHHH---HSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             HhccCCCEEccCCC----CCCcC-------cCChHHHHHhhh---cCCeEEECCC-CHHHHHHHHHHhCCCEEEeCCCCC
Confidence            34567898888642    23211       123776655544   4689999999 7888888887 7788887777764

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=83.94  E-value=3.6  Score=36.81  Aligned_cols=86  Identities=10%  Similarity=-0.006  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|+.....+...       +.+.+...++. ..++||| +.|+..+.+.++.... 
T Consensus        31 ~~~l~~l-v~~li~~Gv~Gl~v~GtTGE~~~Ls~eE-------r~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A  102 (303)
T 2wkj_A           31 KASLRRL-VQFNIQQGIDGLYVGGSTGEAFVQSLSE-------REQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASA  102 (303)
T ss_dssp             HHHHHHH-HHHHHHTTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHcCCCEEEECeeccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence            3333333 3344578999999999876433332211       12223333332 2368986 5676655544443332 


Q ss_pred             --cCCCEEEecHHhhhCCc
Q 023442          134 --KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~  150 (282)
                        .|+|+||+--..+..|.
T Consensus       103 ~~~Gadavlv~~P~y~~~s  121 (303)
T 2wkj_A          103 KRYGFDAVSAVTPFYYPFS  121 (303)
T ss_dssp             HHHTCSEEEEECCCSSCCC
T ss_pred             HhCCCCEEEecCCCCCCCC
Confidence              79999999977776663

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=83.78  E-value=4.3  Score=35.61  Aligned_cols=55  Identities=15%  Similarity=0.083  Sum_probs=40.2

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ..-..+.+...+++|...++.||++.+-.|+.+..     .+.+.+ +.++|+++|.+-+.
T Consensus        61 ~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~-----~~~~~~-l~~aGa~gv~iEd~  115 (255)
T 2qiw_A           61 ENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSP-----ADLIAQ-ILEAGAVGINVEDV  115 (255)
T ss_dssp             TCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCH-----HHHHHH-HHHTTCCEEEECSE
T ss_pred             CCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHH-----HHHHHH-HHHcCCcEEEECCC
Confidence            34456777788888888889999999999975422     333443 45699999998654

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=83.73  E-value=0.63  Score=41.09  Aligned_cols=39  Identities=10%  Similarity=0.176  Sum_probs=33.4

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      +++|++.|.| +++++.+++. .++||+.||++.| +|.-|.
T Consensus       208 ~~rIlYGGSV-~~~N~~~l~~~~diDG~LVGgASL-~~~~F~  247 (254)
T 3m9y_A          208 ATRIQYGGSV-KPNNIKEYMAQTDIDGALVGGASL-KVEDFV  247 (254)
T ss_dssp             TSEEEECSCC-CTTTHHHHHTSTTCCEEEESGGGS-SHHHHH
T ss_pred             CccEEEcCCc-CHHHHHHHHcCCCCCeEEeeHHhh-CHHHHH
Confidence            6899999999 9999999997 8999999997776 454443

>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}

Probab=83.61  E-value=6.1  Score=37.27  Aligned_cols=99  Identities=10%  Similarity=0.178  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHHhhc---C--CccEEEEec--------------CCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc
Q 023442           23 LDPKFVGEAMSVIAAN---T--NVPVSVKCR--------------IGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA   83 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~---~--~ipvsvKiR--------------~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~   83 (282)
                      .+.+.+.-++++|+++   +  ++.+.+..-              -+|    +..+.++++.+++++.++.+|.      
T Consensus       216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~----t~~eai~~~~~ll~~y~i~~IE------  285 (428)
T 3tqp_A          216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQL----TSEEMIDRLTEWTKKYPVISIE------  285 (428)
T ss_dssp             SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCB----CHHHHHHHHHHHHHHSCEEEEE------
T ss_pred             cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceecccccc----CHHHHHHHHHHHHhhcccceEe------
Confidence            3455566678999988   5  456666551              123    3345566655557888866552      


Q ss_pred             ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC---CCCHHHHHHHHH-cCCCEEEec
Q 023442           84 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG---INTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus        84 ~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd---I~s~eda~~~l~-~g~DgVmIG  142 (282)
                        +..        ++-+|+...++.+.. +.||-..||   ++|++++.++++ ..||.|.+=
T Consensus       286 --dPl--------~~dD~eg~~~L~~~~-~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iK  337 (428)
T 3tqp_A          286 --DGL--------SENDWAGWKLLTERL-ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVK  337 (428)
T ss_dssp             --CCS--------CTTCHHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred             --CCC--------CcccHHHHHHHHHhc-CCCcceeccccccCCHHHHHHHHHhCCCCEEEec
Confidence              222        122367666666542 433422355   459999999998 668888653

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=83.52  E-value=3.9  Score=36.48  Aligned_cols=85  Identities=19%  Similarity=0.137  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|......+..+       +.+.+...++. ..++||| +.|... .+++.++.+ 
T Consensus        27 ~~~l~~l-v~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~-t~~ai~la~~   97 (297)
T 3flu_A           27 YEQLRDL-IDWHIENGTDGIVAVGTTGESATLSVEE-------HTAVIEAVVKHVAKRVPVIAGTGANN-TVEAIALSQA   97 (297)
T ss_dssp             HHHHHHH-HHHHHHTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSS-HHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHcCCCEEEeCccccCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCcC-HHHHHHHHHH
Confidence            3343333 3345579999999999875433332111       12223333332 1368887 455554 444444332 


Q ss_pred             ---cCCCEEEecHHhhhCCc
Q 023442          134 ---KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP~  150 (282)
                         .|+|+||+.-..+..|.
T Consensus        98 a~~~Gadavlv~~P~y~~~~  117 (297)
T 3flu_A           98 AEKAGADYTLSVVPYYNKPS  117 (297)
T ss_dssp             HHHTTCSEEEEECCCSSCCC
T ss_pred             HHHcCCCEEEECCCCCCCCC
Confidence               79999999977776664

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=83.28  E-value=3.8  Score=36.77  Aligned_cols=82  Identities=13%  Similarity=0.008  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE-ccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL-NGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~-nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ..++|||+ .|+..+.+.++.... 
T Consensus        28 ~~~l~~lv-~~li~~Gv~gl~v~GtTGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A   99 (309)
T 3fkr_A           28 LASQKRAV-DFMIDAGSDGLCILANFSEQFAITDDE-------RDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRA   99 (309)
T ss_dssp             HHHHHHHH-HHHHHTTCSCEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECccccCcccCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHH
Confidence            33333333 345579999999999775433332111       12223333332 23689885 566655544443332 


Q ss_pred             --cCCCEEEecHHhh
Q 023442          134 --KGAHHVMVGRAAY  146 (282)
Q Consensus       134 --~g~DgVmIGRgal  146 (282)
                        .|+|+||+--..+
T Consensus       100 ~~~Gadavlv~~Pyy  114 (309)
T 3fkr_A          100 QQLGAAMVMAMPPYH  114 (309)
T ss_dssp             HHTTCSEEEECCSCB
T ss_pred             HHcCCCEEEEcCCCC
Confidence              7999999987655

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=83.26  E-value=9.7  Score=33.98  Aligned_cols=104  Identities=10%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      +-..+...+-|++++++- +.++.|--|.-- ....+++.++. ++.++++|+|.|.+++-+.                 
T Consensus       132 l~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai~R-a~ay~eAGAd~i~~e~~~~-----------------  192 (287)
T 3b8i_A          132 LICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVIQR-TLAYQEAGADGICLVGVRD-----------------  192 (287)
T ss_dssp             BCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHHHH-HHHHHHTTCSEEEEECCCS-----------------
T ss_pred             ccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHHHH-HHHHHHcCCCEEEecCCCC-----------------
Confidence            555666666677776653 333444444311 11234555554 4577899999999998321                 


Q ss_pred             HHHHHHHHhcCCCceEEE-ccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442          101 YEYYYALLRDFPDLTFTL-NGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~-nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      .+.+.++.+. .++|++. .|+-...-+..++-+.|+.-|..|-.+
T Consensus       193 ~~~~~~i~~~-~~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~~  237 (287)
T 3b8i_A          193 FAHLEAIAEH-LHIPLMLVTYGNPQLRDDARLARLGVRVVVNGHAA  237 (287)
T ss_dssp             HHHHHHHHTT-CCSCEEEECTTCGGGCCHHHHHHTTEEEEECCCHH
T ss_pred             HHHHHHHHHh-CCCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChHH
Confidence            3455667665 4688873 233222223345555788888887443

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=83.25  E-value=13  Score=33.14  Aligned_cols=106  Identities=17%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+.+  |-.   +..+.++ +++.++++|+|++-+-.-.  |...+..    
T Consensus        57 GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv--g~~---~t~~ai~-la~~A~~~Gadavlv~~P~--y~~~s~~----  124 (301)
T 1xky_A           57 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGT--GSN---NTHASID-LTKKATEVGVDAVMLVAPY--YNKPSQE----  124 (301)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---CHHHHHH-HHHHHHHTTCSEEEEECCC--SSCCCHH----
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCceEEeCC--CCC---CHHHHHH-HHHHHHhcCCCEEEEcCCC--CCCCCHH----
Confidence            4333335555567777776655  58988765  322   2344454 3566789999999887532  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH-cCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~-~g~DgV  139 (282)
                         .-++++.++++. .++||+ +|     |--.+++.+.++.+ ..+-||
T Consensus       125 ---~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi  171 (301)
T 1xky_A          125 ---GMYQHFKAIAES-TPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAI  171 (301)
T ss_dssp             ---HHHHHHHHHHHT-CSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEE
Confidence               115566677664 578875 45     54468888888876 444444

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=83.24  E-value=2.3  Score=37.89  Aligned_cols=78  Identities=13%  Similarity=0.085  Sum_probs=46.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|+..+.+.++....   .|+|+||
T Consensus        29 ~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavl  101 (292)
T 2ojp_A           29 DYHVASGTSAIVSVGTTGESATLNHDE-------HADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCL  101 (292)
T ss_dssp             HHHHHHTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEE
T ss_pred             HHHHHcCCCEEEECccccchhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEE
Confidence            344568999999999876433332211       122233333321 358886 5666555544444433   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       102 v~~P~y~~~s  111 (292)
T 2ojp_A          102 TVTPYYNRPS  111 (292)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977776663

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=83.22  E-value=1.1  Score=39.43  Aligned_cols=40  Identities=20%  Similarity=0.359  Sum_probs=33.0

Q ss_pred             CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442          112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      .+++|++.|.|+. +++.+++. .++||+.||++.| +|.-|.
T Consensus       203 ~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgAsL-~a~~F~  243 (252)
T 2btm_A          203 EAIRIQYGGSVKP-DNIRDFLAQQQIDGALVGGASL-EPASFL  243 (252)
T ss_dssp             TTSEEEEESSCCT-TTHHHHHTSTTCCEEEESGGGS-SHHHHH
T ss_pred             CceeEEEcCCCCH-HHHHHHHcCCCCCeeEecHHHh-ChHHHH
Confidence            3699999999966 99999997 9999999997776 444343

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=83.22  E-value=1.1  Score=39.38  Aligned_cols=39  Identities=15%  Similarity=0.183  Sum_probs=32.6

Q ss_pred             CCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          112 PDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       112 ~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      .+++|++.|.|.. +++.+++. .++||+.||++.|. |.-|
T Consensus       203 ~~vrIlYGGSV~~-~N~~~l~~~~diDG~LVGgAsL~-a~~F  242 (250)
T 1yya_A          203 SRVRILYGGSVNP-KNFADLLSMPNVDGGLVGGASLE-LESF  242 (250)
T ss_dssp             TTCEEEEESSCCT-TTHHHHHTSTTCCEEEESGGGSS-HHHH
T ss_pred             CceeEEEcCCCCH-HHHHHHHcCCCCCeeEeeHHHhC-hHHH
Confidence            3689999999976 99999998 79999999987764 4434

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=83.11  E-value=4.1  Score=36.52  Aligned_cols=84  Identities=14%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE-ccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL-NGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~-nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ..++|||+ .|+. |.+++.++.+ 
T Consensus        35 ~~~l~~lv-~~li~~Gv~gi~v~GttGE~~~Lt~~E-------r~~v~~~~~~~~~grvpviaGvg~~-~t~~ai~la~~  105 (304)
T 3l21_A           35 TATAARLA-NHLVDQGCDGLVVSGTTGESPTTTDGE-------KIELLRAVLEAVGDRARVIAGAGTY-DTAHSIRLAKA  105 (304)
T ss_dssp             HHHHHHHH-HHHHHTTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCS-CHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEeCccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEeCCCC-CHHHHHHHHHH
Confidence            33433333 344578999999999875433332111       12223333332 23689875 5555 4455554443 


Q ss_pred             ---cCCCEEEecHHhhhCC
Q 023442          134 ---KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP  149 (282)
                         .|+|+||+.-..+..|
T Consensus       106 a~~~Gadavlv~~P~y~~~  124 (304)
T 3l21_A          106 CAAEGAHGLLVVTPYYSKP  124 (304)
T ss_dssp             HHHHTCSEEEEECCCSSCC
T ss_pred             HHHcCCCEEEECCCCCCCC
Confidence               7999999997766665

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=83.01  E-value=16  Score=32.20  Aligned_cols=107  Identities=8%  Similarity=-0.070  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC-EEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           26 KFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        26 ~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~-~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      +.+.+.++..++..  +.|+.+=+. |.    ..++..+ .++.++++|+| .|.+|.-.....|.  .++-.-+...++
T Consensus        77 ~~~~~~~~~~~~~~~~~~p~~~~i~-g~----~~~~~~~-~a~~~~~~g~d~~iein~~~P~~~g~--~~~g~~~e~~~~  148 (311)
T 1jub_A           77 DYYLDYVLKNQKENAQEGPIFFSIA-GM----SAAENIA-MLKKIQESDFSGITELNLSCPNVPGE--PQLAYDFEATEK  148 (311)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCEEEEC-CS----SHHHHHH-HHHHHHHSCCCSEEEEESCCCCSSSC--CCGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEcC-CC----CHHHHHH-HHHHHHhcCCCeEEEEeccCCCCCCc--ccccCCHHHHHH
Confidence            33333344444334  678777664 22    2344444 45667889999 99998532111221  111000001133


Q ss_pred             HHHHHHhcCCCceEEE--ccCCCCHHHHHH---HHH-cCCCEEEec
Q 023442          103 YYYALLRDFPDLTFTL--NGGINTVDEVNA---ALR-KGAHHVMVG  142 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~--nGdI~s~eda~~---~l~-~g~DgVmIG  142 (282)
                      .+.++++ ..++||+.  +.++ +.+++.+   .++ .|+|+|.+-
T Consensus       149 iv~~vr~-~~~~Pv~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          149 LLKEVFT-FFTKPLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             HHHHHTT-TCCSCEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             HHHHHHH-hcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCcEEEec
Confidence            3444433 34788874  5665 6555533   333 799998763

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=82.86  E-value=23  Score=32.69  Aligned_cols=79  Identities=8%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCC-CCHHHHHHHHH
Q 023442           55 DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGI-NTVDEVNAALR  133 (282)
Q Consensus        55 ~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI-~s~eda~~~l~  133 (282)
                      .+.+.+++.+. .++++|++.+.+.--+..               .-+.+..+++. .++|++  +|| +++.-+..+++
T Consensus        43 ~D~~atv~Qi~-~l~~aG~diVRvavp~~~---------------~a~al~~I~~~-~~vPlv--aDiHf~~~lal~a~e  103 (366)
T 3noy_A           43 HDVEATLNQIK-RLYEAGCEIVRVAVPHKE---------------DVEALEEIVKK-SPMPVI--ADIHFAPSYAFLSME  103 (366)
T ss_dssp             TCHHHHHHHHH-HHHHTTCCEEEEECCSHH---------------HHHHHHHHHHH-CSSCEE--EECCSCHHHHHHHHH
T ss_pred             cCHHHHHHHHH-HHHHcCCCEEEeCCCChH---------------HHHHHHHHHhc-CCCCEE--EeCCCCHHHHHHHHH
Confidence            44666676665 457899999988753210               12445566554 478886  588 89999999999


Q ss_pred             cCCCEEEecHHhhhCCccc
Q 023442          134 KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       134 ~g~DgVmIGRgal~nP~if  152 (282)
                      .|+|.+=|==|-+++++-|
T Consensus       104 ~G~dklRINPGNig~~~~~  122 (366)
T 3noy_A          104 KGVHGIRINPGNIGKEEIV  122 (366)
T ss_dssp             TTCSEEEECHHHHSCHHHH
T ss_pred             hCCCeEEECCcccCchhHH
Confidence            9999999999999888765

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=82.80  E-value=2.9  Score=37.14  Aligned_cols=76  Identities=16%  Similarity=0.013  Sum_probs=45.2

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIG  142 (282)
                      +.+.+.|++.|.+.|-|+.....+...       +.+.+...++...+ -|.+.|+..+.+.++....   .|+|+||+-
T Consensus        27 ~~li~~Gv~gl~v~GtTGE~~~Ls~eE-------r~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~Gadavlv~   98 (288)
T 2nuw_A           27 KNLLEKGIDAIFVNGTTGLGPALSKDE-------KRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDILGVSSH   98 (288)
T ss_dssp             HHHHHTTCCEEEETSTTTTGGGSCHHH-------HHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence            344578999999999876433332111       12223333332234 3457787655555444432   799999999


Q ss_pred             HHhhhC-C
Q 023442          143 RAAYQN-P  149 (282)
Q Consensus       143 Rgal~n-P  149 (282)
                      -..+.. |
T Consensus        99 ~P~y~~~~  106 (288)
T 2nuw_A           99 SPYYFPRL  106 (288)
T ss_dssp             CCCSSCSC
T ss_pred             CCcCCCCC
Confidence            877766 5

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=82.78  E-value=2.3  Score=38.75  Aligned_cols=86  Identities=14%  Similarity=0.088  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|...+.+-++.... 
T Consensus        54 ~~~l~~lv-~~li~~Gv~Gl~v~GtTGE~~~Ls~eE-------r~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A  125 (332)
T 2r8w_A           54 IEAFSALI-ARLDAAEVDSVGILGSTGIYMYLTREE-------RRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDA  125 (332)
T ss_dssp             HHHHHHHH-HHHHHHTCSEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence            33333333 344578999999999876433332211       122233333322 368986 6676555444433332 


Q ss_pred             --cCCCEEEecHHhhhCCc
Q 023442          134 --KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~  150 (282)
                        .|+|+||+.-..+..|.
T Consensus       126 ~~~Gadavlv~~P~Y~~~s  144 (332)
T 2r8w_A          126 EAAGADALLLAPVSYTPLT  144 (332)
T ss_dssp             HHHTCSEEEECCCCSSCCC
T ss_pred             HhcCCCEEEECCCCCCCCC
Confidence              79999999977776653

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=82.74  E-value=7  Score=35.51  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEE-ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEcc--CCCCHHHHHHHHH
Q 023442           57 YNQLCDFIYKVSSLSPTRHFII-HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNG--GINTVDEVNAALR  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~V-H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nG--dI~s~eda~~~l~  133 (282)
                      .++..+ +++.|.++|++.|.+ |+. .+ .|.++ ++.....-.|+.++++.+..+++|+.+=|  +..+.++++++.+
T Consensus        29 ~e~k~~-i~~~L~~~Gvd~IEvG~~~-g~-p~ssp-~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~  104 (345)
T 1nvm_A           29 LDDVRA-IARALDKAKVDSIEVAHGD-GL-QGSSF-NYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQ  104 (345)
T ss_dssp             HHHHHH-HHHHHHHHTCSEEECSCTT-ST-TCCBT-TTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHcCCCEEEEecCC-CC-CCCCC-cccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHh
Confidence            445444 456778899999999 543 11 11111 11101122488888887765677776442  3457899999999


Q ss_pred             cCCCEEEec
Q 023442          134 KGAHHVMVG  142 (282)
Q Consensus       134 ~g~DgVmIG  142 (282)
                      .|+|+|-|.
T Consensus       105 aGvd~v~I~  113 (345)
T 1nvm_A          105 AGARVVRVA  113 (345)
T ss_dssp             HTCCEEEEE
T ss_pred             CCcCEEEEE
Confidence            999999885

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=82.49  E-value=2.1  Score=38.21  Aligned_cols=78  Identities=14%  Similarity=0.091  Sum_probs=46.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++.. .++||| +.|...+.+-++....   .|+|+||
T Consensus        28 ~~li~~Gv~gi~v~GttGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavl  100 (297)
T 2rfg_A           28 DWQIKHGAHGLVPVGTTGESPTLTEEE-------HKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVL  100 (297)
T ss_dssp             HHHHHTTCSEEECSSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHcCCCEEEECccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            344578999999998775433332211       122233333221 358876 5666555444443332   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       101 v~~P~y~~~s  110 (297)
T 2rfg_A          101 CVAGYYNRPS  110 (297)
T ss_dssp             ECCCTTTCCC
T ss_pred             EcCCCCCCCC
Confidence            9988776663

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=82.36  E-value=3.5  Score=36.66  Aligned_cols=78  Identities=14%  Similarity=0.089  Sum_probs=45.6

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR----KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~----~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|......+..+       +.+.+...++. ..++|||+.=+=.|.+++.++.+    .|+|+||
T Consensus        30 ~~li~~Gv~gl~v~GttGE~~~Lt~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavl  102 (292)
T 3daq_A           30 NFLLENNAQAIIVNGTTAESPTLTTDE-------KELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIM  102 (292)
T ss_dssp             HHHHHTTCCEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHcCCCEEEECccccccccCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEE
Confidence            344579999999998775433222111       12223333332 23688875433345555555443    7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +.-..+..|.
T Consensus       103 v~~P~y~~~~  112 (292)
T 3daq_A          103 LITPYYNKTN  112 (292)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977766663

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=82.20  E-value=12  Score=34.40  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||.-|+|.+++.++-+     .+.||.+|.  |..   +++|+... +..+.+.|.+.+.+|+-+ .|  ..+.     
T Consensus       130 I~S~~~~n~~LL~~va~-----~gkPviLst--Gma---t~~Ei~~A-ve~i~~~G~~iiLlhc~s-~Y--p~~~-----  190 (349)
T 2wqp_A          130 IGSGECNNYPLIKLVAS-----FGKPIILST--GMN---SIESIKKS-VEIIREAGVPYALLHCTN-IY--PTPY-----  190 (349)
T ss_dssp             ECGGGTTCHHHHHHHHT-----TCSCEEEEC--TTC---CHHHHHHH-HHHHHHHTCCEEEEECCC-CS--SCCG-----
T ss_pred             ECcccccCHHHHHHHHh-----cCCeEEEEC--CCC---CHHHHHHH-HHHHHHcCCCEEEEeccC-CC--CCCh-----
Confidence            36778999988665543     489999986  442   35555443 345567788888889632 22  1111     


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ..+++..+..+++.++++||..++==....-+..+...|||  ||=+-
T Consensus       191 ~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAvAlGA~--iIEkH  236 (349)
T 2wqp_A          191 EDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGS--ILERH  236 (349)
T ss_dssp             GGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCC--EEEEE
T ss_pred             hhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHHHhCCC--EEEeC
Confidence            13456777777776658999765433344555555567888  44433

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=82.11  E-value=11  Score=33.70  Aligned_cols=105  Identities=13%  Similarity=0.086  Sum_probs=59.8

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCC-CCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVD-DHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d-~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +...+...+-|++++++. ..++.|--|.--. ....+++.++. ++.++++|+|.|.++++...               
T Consensus       128 l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~R-a~ay~eAGAd~i~~e~~~~~---------------  191 (290)
T 2hjp_A          128 LVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRR-GQAYEEAGADAILIHSRQKT---------------  191 (290)
T ss_dssp             BCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHH-HHHHHHTTCSEEEECCCCSS---------------
T ss_pred             ccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHH-HHHHHHcCCcEEEeCCCCCC---------------
Confidence            444444444556555542 2334444443111 11224566654 45678999999999995311               


Q ss_pred             cHHHHHHHHhcCC-CceEEEc---cCCCCHHHHHHHHHcC-CCEEEecHHhh
Q 023442          100 KYEYYYALLRDFP-DLTFTLN---GGINTVDEVNAALRKG-AHHVMVGRAAY  146 (282)
Q Consensus       100 ~~~~i~~l~~~~~-~ipVi~n---GdI~s~eda~~~l~~g-~DgVmIGRgal  146 (282)
                       -+.+.++.+... .+|+++|   +...|   ..++-+.| +..|.+|-.++
T Consensus       192 -~~~~~~i~~~~~~~vP~i~n~~~~~~~~---~~eL~~lG~v~~v~~~~~~~  239 (290)
T 2hjp_A          192 -PDEILAFVKSWPGKVPLVLVPTAYPQLT---EADIAALSKVGIVIYGNHAI  239 (290)
T ss_dssp             -SHHHHHHHHHCCCSSCEEECGGGCTTSC---HHHHHTCTTEEEEEECSHHH
T ss_pred             -HHHHHHHHHHcCCCCCEEEeccCCCCCC---HHHHHhcCCeeEEEechHHH
Confidence             234556666542 2999987   33344   34555578 99999885544

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...

Probab=82.11  E-value=9.3  Score=33.71  Aligned_cols=109  Identities=14%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      .||..+++.+++.+    +. .++.||.+|.-..- ..+   ++... +..+...|...+++.-|...+ +.   +.   
T Consensus       100 IgA~~~rn~~ll~~----~a-~~~~PV~lK~G~~~-t~~---e~~~A-v~~i~~~GN~~i~L~~rG~~~-~y---~~---  162 (267)
T 2nwr_A          100 IPAFLCRQTDLLLA----AA-KTGRAVNVKKGQFL-APW---DTKNV-VEKLKFGGAKEIYLTERGTTF-GY---NN---  162 (267)
T ss_dssp             ECGGGTTCHHHHHH----HH-TTTSEEEEECCTTC-CGG---GGHHH-HHHHHHTTCSSEEEEECCEEC-SS---SC---
T ss_pred             ECcccccCHHHHHH----HH-cCCCcEEEeCCCCC-CHH---HHHHH-HHHHHHcCCCeEEEEECCCCC-CC---Cc---
Confidence            68889999985444    42 46899999965421 112   22222 334567898666665554333 21   10   


Q ss_pred             CCccHHHHHHHHhcCCCceEEEc---------------cCCCC--HHHHHHHHHcCCCEEEecHHh
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLN---------------GGINT--VDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~n---------------GdI~s--~eda~~~l~~g~DgVmIGRga  145 (282)
                      .-++...+..+.+ . + ||+..               ++-..  ..-+......|+||+||=+-.
T Consensus       163 ~~~dl~~i~~lk~-~-~-pVivD~sH~~q~p~G~s~hs~g~~~~~~~ia~aava~Ga~G~mIE~H~  225 (267)
T 2nwr_A          163 LVVDFRSLPIMKQ-W-A-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHP  225 (267)
T ss_dssp             EECCTTHHHHHTT-T-S-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEES
T ss_pred             cccCHHHHHHHHH-c-C-CEEEcCCcccccCCCcCcCCCCchhHHHHHHHHHHHcCCCEEEEEecC
Confidence            0123444545543 3 5 88762               22111  222334445899999997643

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=82.04  E-value=10  Score=33.70  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+.+  |-.   +..+.++ +++.+++.|+|++-+-.-.  |...+..    
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~ai~-la~~A~~~Gadavlv~~P~--y~~~s~~----  112 (297)
T 2rfg_A           45 GESPTLTEEEHKRVVALVAEQAQGRVPVIAGA--GSN---NPVEAVR-YAQHAQQAGADAVLCVAGY--YNRPSQE----  112 (297)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC--CCS---SHHHHHH-HHHHHHHHTCSEEEECCCT--TTCCCHH----
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEcc--CCC---CHHHHHH-HHHHHHhcCCCEEEEcCCC--CCCCCHH----
Confidence            4333335555567777776654  58888765  322   2344444 3566788999999887531  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR  133 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~  133 (282)
                         .-++++.++++. .++||+ +|     |--.+++.+.++.+
T Consensus       113 ---~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La~  152 (297)
T 2rfg_A          113 ---GLYQHFKMVHDA-IDIPIIVYNIPPRAVVDIKPETMARLAA  152 (297)
T ss_dssp             ---HHHHHHHHHHHH-CSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence               114556677665 478875 45     55568888888876

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=81.98  E-value=4.7  Score=37.23  Aligned_cols=85  Identities=12%  Similarity=0.041  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE-ccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL-NGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~-nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ...+|||+ .|+..+.+.++.... 
T Consensus        79 ~~al~~l-v~~li~~Gv~Gl~v~GTTGE~~~Ls~eE-------r~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A  150 (360)
T 4dpp_A           79 LEAYDDL-VNIQIQNGAEGVIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQG  150 (360)
T ss_dssp             HHHHHHH-HHHHHHTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHcCCCEEEecccccChhhCCHHH-------HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence            4343333 3345579999999999775433222111       12223333332 23689875 666544444433332 


Q ss_pred             --cCCCEEEecHHhhhCC
Q 023442          134 --KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP  149 (282)
                        .|||+||+--..+..|
T Consensus       151 ~~~Gadavlvv~PyY~k~  168 (360)
T 4dpp_A          151 FAVGMHAALHINPYYGKT  168 (360)
T ss_dssp             HHTTCSEEEEECCCSSCC
T ss_pred             HHcCCCEEEEcCCCCCCC
Confidence              7999999986555444

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=81.80  E-value=3.3  Score=37.30  Aligned_cols=85  Identities=12%  Similarity=0.145  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ..++||| +.|... .+++.++.+ 
T Consensus        43 ~~~l~~lv-~~li~~Gv~Gl~v~GtTGE~~~Ls~~E-------r~~v~~~~v~~~~grvpViaGvg~~s-t~eai~la~~  113 (314)
T 3qze_A           43 WDSLAKLV-DFHLQEGTNAIVAVGTTGESATLDVEE-------HIQVIRRVVDQVKGRIPVIAGTGANS-TREAVALTEA  113 (314)
T ss_dssp             HHHHHHHH-HHHHHHTCCEEEESSGGGTGGGCCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSS-HHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEECccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCcC-HHHHHHHHHH
Confidence            43443333 344578999999999775433332111       12223223332 1368887 455554 444444432 


Q ss_pred             ---cCCCEEEecHHhhhCCc
Q 023442          134 ---KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP~  150 (282)
                         .|+|+||+.-..+..|.
T Consensus       114 A~~~Gadavlv~~P~y~~~s  133 (314)
T 3qze_A          114 AKSGGADACLLVTPYYNKPT  133 (314)
T ss_dssp             HHHTTCSEEEEECCCSSCCC
T ss_pred             HHHcCCCEEEEcCCCCCCCC
Confidence               79999999977776663

>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A

Probab=81.74  E-value=6.2  Score=36.77  Aligned_cols=43  Identities=7%  Similarity=0.018  Sum_probs=33.7

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEE
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVM  140 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVm  140 (282)
                      ++-+++..+++.+. .++||.+.=.+.|.+|+.++++ ..+|.|.
T Consensus       268 ~~~d~~~~~~l~~~-~~iPIa~dE~~~~~~~~~~~i~~~a~div~  311 (412)
T 4h1z_A          268 RTEDIDGLARVAAS-VSTAIAVGEEWRTVHDMVPRVARRALAIVQ  311 (412)
T ss_dssp             CTTCHHHHHHHHHH-CSSEEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred             CccchHHHHHHHhh-cCCccccCCcccchHhHHHHHHcCCCCEEE
Confidence            34457777777765 5899999889999999999998 5577654

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=81.54  E-value=5.3  Score=36.02  Aligned_cols=103  Identities=14%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             ccCCHHHHHHHHHHHhhc---CCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           21 LMLDPKFVGEAMSVIAAN---TNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~---~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      |....+.+.+| ++.+++   .+.++.|=-|.---....+++.++. ++...++|+|.|.+|+-+.              
T Consensus       131 l~~~~e~~~rI-~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~R-a~ay~eAGAD~ifi~g~~~--------------  194 (302)
T 3fa4_A          131 LVDTDTYVTRI-RAAVQARQRIGSDIVVIARTDSLQTHGYEESVAR-LRAARDAGADVGFLEGITS--------------  194 (302)
T ss_dssp             BCCHHHHHHHH-HHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHH-HHHHHTTTCSEEEETTCCC--------------
T ss_pred             ecCHHHHHHHH-HHHHHHHHhcCCCEEEEEEecccccCCHHHHHHH-HHHHHHcCCCEEeecCCCC--------------
Confidence            33333444444 444433   2445555556411001124555554 3456789999999998421              


Q ss_pred             CccHHHHHHHHhcCCCceEEEc---cC---CCCHHHHHHHHHcCCCEEEecHHh
Q 023442           98 PLKYEYYYALLRDFPDLTFTLN---GG---INTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~n---Gd---I~s~eda~~~l~~g~DgVmIGRga  145 (282)
                         .+.+.++++.....|+..|   |+   ..|.+   ++-+.|+.-|..+-.+
T Consensus       195 ---~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~---eL~~lGv~~v~~~~~~  242 (302)
T 3fa4_A          195 ---REMARQVIQDLAGWPLLLNMVEHGATPSISAA---EAKEMGFRIIIFPFAA  242 (302)
T ss_dssp             ---HHHHHHHHHHTTTSCEEEECCTTSSSCCCCHH---HHHHHTCSEEEETTTT
T ss_pred             ---HHHHHHHHHHhcCCceeEEEecCCCCCCCCHH---HHHHcCCCEEEEchHH
Confidence               3556677776545788765   22   23444   4444688888887444

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=81.51  E-value=4  Score=36.61  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH---cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR---KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~---~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-|+.....+...       +.+.+...++. ..++||| +.|+..+.+.++....   .|+|+||
T Consensus        40 ~~li~~Gv~gl~v~GtTGE~~~Ls~eE-------r~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavl  112 (306)
T 1o5k_A           40 RYQLENGVNALIVLGTTGESPTVNEDE-------REKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVL  112 (306)
T ss_dssp             HHHHHTTCCEEEESSGGGTGGGCCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHcCCCEEEeCccccchhhCCHHH-------HHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEE
Confidence            344578999999999876433332211       12223333322 1368886 5666555444443332   7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +--..+..|.
T Consensus       113 v~~P~y~~~s  122 (306)
T 1o5k_A          113 VVTPYYNKPT  122 (306)
T ss_dssp             EECCCSSCCC
T ss_pred             ECCCCCCCCC
Confidence            9977776663

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=81.49  E-value=13  Score=33.72  Aligned_cols=99  Identities=14%  Similarity=0.094  Sum_probs=58.0

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+  |-.   +..+.++ +++.++++|+|++-+-.-.  |...+..    
T Consensus        76 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv--g~~---st~eai~-la~~A~~~Gadavlv~~P~--Y~~~s~~----  143 (343)
T 2v9d_A           76 GEFSQLGAEERKAIARFAIDHVDRRVPVLIGT--GGT---NARETIE-LSQHAQQAGADGIVVINPY--YWKVSEA----  143 (343)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CSS---CHHHHHH-HHHHHHHHTCSEEEEECCS--SSCCCHH----
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCC---CHHHHHH-HHHHHHhcCCCEEEECCCC--CCCCCHH----
Confidence            3333335555567777776655  58888765  222   2344444 3566789999999887532  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAAL  132 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l  132 (282)
                         --++++.++++. .++||+ +|     |--.+++.+.++.
T Consensus       144 ---~l~~~f~~VA~a-~~lPiilYn~P~~tg~~l~~e~~~~La  182 (343)
T 2v9d_A          144 ---NLIRYFEQVADS-VTLPVMLYNFPALTGQDLTPALVKTLA  182 (343)
T ss_dssp             ---HHHHHHHHHHHT-CSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence               014556666664 478875 45     5445888888877

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=81.41  E-value=3.8  Score=36.94  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCH----------HHH
Q 023442           59 QLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTV----------DEV  128 (282)
Q Consensus        59 e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~----------eda  128 (282)
                      +.+..+++...++|++.+..++..                  .   ..+.+..++-.++..+||.--          ..+
T Consensus       158 e~V~~lA~~a~~~G~dGvV~s~~E------------------~---~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~  216 (303)
T 3ru6_A          158 EAVINFSKISYENGLDGMVCSVFE------------------S---KKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANL  216 (303)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCTTT------------------H---HHHHHHSCTTSEEEECCCCTTC--------CCSH
T ss_pred             HHHHHHHHHHHHcCCCEEEECHHH------------------H---HHHHHhCCCccEEECCCcCcccCCcccccccCCH
Confidence            333345667778999998774421                  1   123333333346677777621          034


Q ss_pred             HHHHHcCCCEEEecHHhhhCCcc
Q 023442          129 NAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       129 ~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .++++.|+|.+.+||++...+..
T Consensus       217 ~~a~~aGAd~iVvGr~I~~a~dp  239 (303)
T 3ru6_A          217 AMARENLSDYIVVGRPIYKNENP  239 (303)
T ss_dssp             HHHHHTTCSEEEECHHHHTSSCH
T ss_pred             HHHHHcCCCEEEEChHHhCCCCH
Confidence            45567899999999999987653

>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1

Probab=81.34  E-value=8.2  Score=35.47  Aligned_cols=44  Identities=14%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ++-+|+...++.+. ..+||.+.=.+.|.+|+.++++ ..+|.|.+
T Consensus       237 ~~~d~~~~~~l~~~-~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~i  281 (386)
T 1wue_A          237 AADDFLDHAQLQRE-LKTRICLDENIRSLKDCQVALALGSCRSINL  281 (386)
T ss_dssp             CTTCSHHHHHHHTT-CSSCEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred             CcccHHHHHHHHHh-cCCCEEeCCccCCHHHHHHHHHcCCCCEEEE
Confidence            34456767777664 5799999888999999999998 66898766

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=81.28  E-value=9.7  Score=28.84  Aligned_cols=62  Identities=6%  Similarity=0.032  Sum_probs=45.2

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      .+.+...|.|.+........             .++.+..+.+..+++|||.-.+-.+.+.+.++++.|+++++.
T Consensus        61 ~l~~~~~dlii~D~~l~~~~-------------g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~  122 (150)
T 4e7p_A           61 LLEKESVDIAILDVEMPVKT-------------GLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVL  122 (150)
T ss_dssp             HHTTSCCSEEEECSSCSSSC-------------HHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred             HhhccCCCEEEEeCCCCCCc-------------HHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEe
Confidence            34566788888775432111             166777777767789999888888999999999999987754

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=81.04  E-value=13  Score=33.22  Aligned_cols=106  Identities=10%  Similarity=0.010  Sum_probs=63.0

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+  |-.   +..+.++ +++.+++.|+|++-+..-.  |...+.     
T Consensus        60 GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~ai~-la~~a~~~Gadavlv~~P~--y~~~s~-----  126 (304)
T 3l21_A           60 GESPTTTDGEKIELLRAVLEAVGDRARVIAGA--GTY---DTAHSIR-LAKACAAEGAHGLLVVTPY--YSKPPQ-----  126 (304)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC--CCS---CHHHHHH-HHHHHHHHTCSEEEEECCC--SSCCCH-----
T ss_pred             cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC--CCC---CHHHHHH-HHHHHHHcCCCEEEECCCC--CCCCCH-----
Confidence            3333334555567777776655  57998864  322   2345554 3566789999999987532  111111     


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH-cCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~-~g~DgV  139 (282)
                        ..-++++.++++. .++||+ +|     |--.+++.+.++.+ ..+-||
T Consensus       127 --~~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi  174 (304)
T 3l21_A          127 --RGLQAHFTAVADA-TELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGV  174 (304)
T ss_dssp             --HHHHHHHHHHHTS-CSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred             --HHHHHHHHHHHHh-cCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence              0114556677664 588985 55     66678888888876 444444

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=81.02  E-value=5.4  Score=35.94  Aligned_cols=76  Identities=20%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH---cCCCEE
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR---KGAHHV  139 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~---~g~DgV  139 (282)
                      .+.+.+.|++.|.+-|-|......+..+       +.+.+...++. ...+||| +.|+..+.+.++....   .|+|+|
T Consensus        38 v~~li~~Gv~gl~v~GtTGE~~~Ls~~E-------r~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadav  110 (318)
T 3qfe_A           38 YAYLARSGLTGLVILGTNAEAFLLTREE-------RAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYV  110 (318)
T ss_dssp             HHHHHTTTCSEEEESSGGGTGGGSCHHH-------HHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHcCCCEEEeCccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            3345678999999999775433232111       12223333332 2368887 5666544444443332   799999


Q ss_pred             EecHHhhh
Q 023442          140 MVGRAAYQ  147 (282)
Q Consensus       140 mIGRgal~  147 (282)
                      |+--..+.
T Consensus       111 lv~~P~y~  118 (318)
T 3qfe_A          111 LVLPPAYF  118 (318)
T ss_dssp             EECCCCC-
T ss_pred             EEeCCccc
Confidence            99987554

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=81.00  E-value=3.9  Score=36.34  Aligned_cols=85  Identities=13%  Similarity=0.155  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEE-ccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTL-NGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~-nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ...+|||+ .|.. |.+++.++.+ 
T Consensus        21 ~~~l~~lv-~~li~~Gv~gl~~~GttGE~~~Ls~~E-------r~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~   91 (291)
T 3tak_A           21 WKSLEKLV-EWHIEQGTNSIVAVGTTGEASTLSMEE-------HTQVIKEIIRVANKRIPIIAGTGAN-STREAIELTKA   91 (291)
T ss_dssp             HHHHHHHH-HHHHHHTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCS-SHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHCCCCEEEECccccccccCCHHH-------HHHHHHHHHHHhCCCCeEEEeCCCC-CHHHHHHHHHH
Confidence            33333333 344578999999999775433322111       12223223332 13688874 5554 4455544432 


Q ss_pred             ---cCCCEEEecHHhhhCCc
Q 023442          134 ---KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP~  150 (282)
                         .|+|+||+.-..+..|.
T Consensus        92 a~~~Gadavlv~~P~y~~~~  111 (291)
T 3tak_A           92 AKDLGADAALLVTPYYNKPT  111 (291)
T ss_dssp             HHHHTCSEEEEECCCSSCCC
T ss_pred             HHhcCCCEEEEcCCCCCCCC
Confidence               79999999977776664

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=80.99  E-value=14  Score=32.52  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+.+  |-.   +..+.++ +++.++++|+|++-+-.-.  |...+..    
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~~---~t~~ai~-la~~a~~~Gadavlv~~P~--y~~~s~~----  112 (289)
T 2yxg_A           45 GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGA--GSN---CTEEAIE-LSVFAEDVGADAVLSITPY--YNKPTQE----  112 (289)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CCS---SHHHHHH-HHHHHHHHTCSEEEEECCC--SSCCCHH----
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCC---CHHHHHH-HHHHHHhcCCCEEEECCCC--CCCCCHH----
Confidence            4333335555567777776654  58888765  322   2344444 3566788999999887532  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAAL  132 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l  132 (282)
                         .-++++.++++. .++||+ +|     |--.+++.+.++.
T Consensus       113 ---~l~~~f~~ia~a-~~lPiilYn~P~~tg~~l~~~~~~~La  151 (289)
T 2yxg_A          113 ---GLRKHFGKVAES-INLPIVLYNVPSRTAVNLEPKTVKLLA  151 (289)
T ss_dssp             ---HHHHHHHHHHHH-CSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCccccCcCCCHHHHHHHH
Confidence               114556667665 478875 45     5446888888887

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=80.91  E-value=8.2  Score=32.66  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=24.4

Q ss_pred             ceEEEccCCCCH---HH------HHHHHHcCCCEEEecHHhhhCCc
Q 023442          114 LTFTLNGGINTV---DE------VNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       114 ipVi~nGdI~s~---ed------a~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      .+ +..|||.--   .|      ..+ ++.|+|++.+||+++..+.
T Consensus       157 ~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~d  200 (213)
T 1vqt_A          157 GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSEN  200 (213)
T ss_dssp             SC-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSC
T ss_pred             CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCC
Confidence            35 666777432   12      466 7789999999999987766

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=80.90  E-value=4.2  Score=37.18  Aligned_cols=86  Identities=10%  Similarity=0.062  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-|+.....+...       +.+.+...++. ..++||| +.|+..+.+-++.... 
T Consensus        51 ~~~l~~lv-~~li~~Gv~Gl~v~GtTGE~~~Ls~eE-------r~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A  122 (343)
T 2v9d_A           51 KPGTAALI-DDLIKAGVDGLFFLGSGGEFSQLGAEE-------RKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHA  122 (343)
T ss_dssp             HHHHHHHH-HHHHHTTCSCEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHcCCCEEEeCccccChhhCCHHH-------HHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHH
Confidence            43443433 344578999999999876433332111       12223333322 1368886 5666554444433332 


Q ss_pred             --cCCCEEEecHHhhhCCc
Q 023442          134 --KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP~  150 (282)
                        .|+|+||+--..+..|.
T Consensus       123 ~~~Gadavlv~~P~Y~~~s  141 (343)
T 2v9d_A          123 QQAGADGIVVINPYYWKVS  141 (343)
T ss_dssp             HHHTCSEEEEECCSSSCCC
T ss_pred             HhcCCCEEEECCCCCCCCC
Confidence              79999999977776663

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=80.76  E-value=4.1  Score=36.77  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEE-EccCCCCHHHHHHHHH-
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFT-LNGGINTVDEVNAALR-  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi-~nGdI~s~eda~~~l~-  133 (282)
                      .+.+.+. .+.+.+.|++.|.+-|-|+.....+..+       +.+.+...++. ..++||| +.|... .+++.++.+ 
T Consensus        42 ~~~l~~l-i~~li~~Gv~Gl~v~GtTGE~~~Ls~~E-------r~~v~~~~v~~~~grvpViaGvg~~s-t~~ai~la~~  112 (315)
T 3si9_A           42 EKAFCNF-VEWQITQGINGVSPVGTTGESPTLTHEE-------HKRIIELCVEQVAKRVPVVAGAGSNS-TSEAVELAKH  112 (315)
T ss_dssp             HHHHHHH-HHHHHHTTCSEEECSSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCBEEECCCSS-HHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHcCCCEEEeCccccCccccCHHH-------HHHHHHHHHHHhCCCCcEEEeCCCCC-HHHHHHHHHH
Confidence            4444443 3345579999999999775433332111       12223333332 2368876 455554 444444332 


Q ss_pred             ---cCCCEEEecHHhhhCC
Q 023442          134 ---KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 ---~g~DgVmIGRgal~nP  149 (282)
                         .|+|+||+.-..+..|
T Consensus       113 A~~~Gadavlv~~P~y~~~  131 (315)
T 3si9_A          113 AEKAGADAVLVVTPYYNRP  131 (315)
T ss_dssp             HHHTTCSEEEEECCCSSCC
T ss_pred             HHhcCCCEEEECCCCCCCC
Confidence               7999999997776666

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=80.59  E-value=12  Score=33.60  Aligned_cols=104  Identities=14%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+  |- +   ..+.++ +++.++++|+|++-+-.-.  |...+..    
T Consensus        57 GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGv--g~-s---t~~ai~-la~~A~~~Gadavlv~~P~--y~~~s~~----  123 (314)
T 3d0c_A           57 GEFYALTIEEAKQVATRVTELVNGRATVVAGI--GY-S---VDTAIE-LGKSAIDSGADCVMIHQPV--HPYITDA----  123 (314)
T ss_dssp             GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE--CS-S---HHHHHH-HHHHHHHTTCSEEEECCCC--CSCCCHH----
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCCeEEecC--Cc-C---HHHHHH-HHHHHHHcCCCEEEECCCC--CCCCCHH----
Confidence            3333335555567777776655  58998866  32 2   234444 3566789999999887532  2111111    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec--cCCCCHHHHHHHHH-cCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN--GGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n--GdI~s~eda~~~l~-~g~DgV  139 (282)
                         --++++.++++. .++||+ +|  |- .+++.+.++.+ ..+-||
T Consensus       124 ---~l~~~f~~va~a-~~lPiilYn~tg~-l~~~~~~~La~~pnIvgi  166 (314)
T 3d0c_A          124 ---GAVEYYRNIIEA-LDAPSIIYFKDAH-LSDDVIKELAPLDKLVGI  166 (314)
T ss_dssp             ---HHHHHHHHHHHH-SSSCEEEEECCTT-SCTHHHHHHTTCTTEEEE
T ss_pred             ---HHHHHHHHHHHh-CCCCEEEEeCCCC-cCHHHHHHHHcCCCEEEE
Confidence               015566677765 479985 45  44 67888887765 333333

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=80.57  E-value=2.6  Score=36.52  Aligned_cols=47  Identities=15%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             HHHHHhcCCCceEEEccCCCCH-H---------HHHHHHHcCCCEEEecHHhhhCCc
Q 023442          104 YYALLRDFPDLTFTLNGGINTV-D---------EVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~-e---------da~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.++.+.....+++..|||..- .         .+.++++.|+|.+.+||+++..+.
T Consensus       167 i~~lr~~~~~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~d  223 (246)
T 2yyu_A          167 AAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAAD  223 (246)
T ss_dssp             HHHHHHHHCTTSEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSS
T ss_pred             HHHHHHhcCCCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCC
Confidence            3344332223448889999632 0         366666789999999999987655

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=80.41  E-value=5.4  Score=34.89  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=50.1

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++. +.+|.|-.-..+++|.            ++.+.++.+ .+++||+.--=|.+.-++.++...|||+|.+==
T Consensus        66 iA~~y~~~-A~~IsVlTd~~~F~gs------------~~dL~~ir~-~v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~  131 (251)
T 1i4n_A           66 FIRMYDEL-ADAISILTEKHYFKGD------------PAFVRAARN-LTCRPILAKDFYIDTVQVKLASSVGADAILIIA  131 (251)
T ss_dssp             HHHHHHHH-CSEEEEECCCSSSCCC------------THHHHHHHT-TCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEG
T ss_pred             HHHHHHHh-CCceEEEecccccCCC------------HHHHHHHHH-hCCCCEEEeeCCCCHHHHHHHHHcCCCEEEEec
Confidence            45566777 9999997655555664            466666655 469999987767777788887779999996543


Q ss_pred             HhhhC
Q 023442          144 AAYQN  148 (282)
Q Consensus       144 gal~n  148 (282)
                      +++.+
T Consensus       132 a~l~~  136 (251)
T 1i4n_A          132 RILTA  136 (251)
T ss_dssp             GGSCH
T ss_pred             ccCCH
Confidence            44443

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=80.41  E-value=19  Score=31.86  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCC-CCcCCcC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG-ISPAENR   94 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G-~~~ad~~   94 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+-  -.   +..+.++ +++.++++|+|++-+-.-.  |.. .+..   
T Consensus        48 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg--~~---~t~~ai~-la~~A~~~Gadavlv~~P~--y~~~~s~~---  116 (294)
T 3b4u_A           48 GEGCSVGSRERQAILSSFIAAGIAPSRIVTGVL--VD---SIEDAAD-QSAEALNAGARNILLAPPS--YFKNVSDD---  116 (294)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEEC--CS---SHHHHHH-HHHHHHHTTCSEEEECCCC--SSCSCCHH---
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC--Cc---cHHHHHH-HHHHHHhcCCCEEEEcCCc--CCCCCCHH---
Confidence            4334445555578888887766  489987653  22   2344444 3566789999999887532  211 1111   


Q ss_pred             CCCCccHHHHHHHHhcCC--CceEE-Ec-----cCCCCHHHHHHHH-H-cC-CCEE
Q 023442           95 TIPPLKYEYYYALLRDFP--DLTFT-LN-----GGINTVDEVNAAL-R-KG-AHHV  139 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~--~ipVi-~n-----GdI~s~eda~~~l-~-~g-~DgV  139 (282)
                          .-++++.++++..+  ++||+ +|     |--.+++.+.++. + .. +-||
T Consensus       117 ----~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgi  168 (294)
T 3b4u_A          117 ----GLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGV  168 (294)
T ss_dssp             ----HHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEE
T ss_pred             ----HHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEE
Confidence                11556667776543  78875 45     5445889888887 5 44 4444

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=80.34  E-value=20  Score=31.58  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+.+  |-.   +..+.++ +++.+++.|+|++-+-.-.  |...+..    
T Consensus        45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~ai~-la~~A~~~Gadavlv~~P~--y~~~s~~----  112 (294)
T 2ehh_A           45 GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT--GGN---ATHEAVH-LTAHAKEVGADGALVVVPY--YNKPTQR----  112 (294)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CCS---CHHHHHH-HHHHHHHTTCSEEEEECCC--SSCCCHH----
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCC---CHHHHHH-HHHHHHhcCCCEEEECCCC--CCCCCHH----
Confidence            3333334444466777766654  48888765  322   2344454 3566789999999887531  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAAL  132 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l  132 (282)
                         .-++++.++++. .++||+ +|     |--.+++.+.++.
T Consensus       113 ---~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La  151 (294)
T 2ehh_A          113 ---GLYEHFKTVAQE-VDIPIIIYNIPSRTCVEISVDTMFKLA  151 (294)
T ss_dssp             ---HHHHHHHHHHHH-CCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCCcccCcCCCHHHHHHHH
Confidence               114566677665 478875 45     5446888888887

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=80.32  E-value=6.3  Score=35.05  Aligned_cols=73  Identities=8%  Similarity=0.050  Sum_probs=43.6

Q ss_pred             HHHHHhCCCCEEEEecC----CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           65 YKVSSLSPTRHFIIHSR----KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~R----t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      ++.++++|++.|.+-.+    .+...|..       .....+.+.++.+. .++||+++-.+...++++.+.+.|||+|.
T Consensus        34 a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~-------~~~~~~~i~~I~~~-~~iPv~~k~r~g~~~~~~~~~a~GAd~V~  105 (305)
T 2nv1_A           34 AKIAEEAGAVAVMALERVPADIRAAGGVA-------RMADPTIVEEVMNA-VSIPVMAKARIGHIVEARVLEAMGVDYID  105 (305)
T ss_dssp             HHHHHHTTCSEEEECCC-------CCCCC-------CCCCHHHHHHHHHH-CSSCEEEEECTTCHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHcCCCEEEEcCCCcchhhhccCcc-------cCCCHHHHHHHHHh-CCCCEEecccccchHHHHHHHHCCCCEEE
Confidence            44567899999954321    11112210       01125667777665 48999864333337777777779999996


Q ss_pred             ecHHhh
Q 023442          141 VGRAAY  146 (282)
Q Consensus       141 IGRgal  146 (282)
                       +-.++
T Consensus       106 -~~~~l  110 (305)
T 2nv1_A          106 -ESEVL  110 (305)
T ss_dssp             -ECTTS
T ss_pred             -EeccC
Confidence             54554

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=80.23  E-value=10  Score=33.25  Aligned_cols=104  Identities=9%  Similarity=0.058  Sum_probs=56.6

Q ss_pred             HHHHHHHhh-cCCccEEEEecCCCCCCCcHHHHHHHHHHHHHh-CCCCEEEEecCCcc-cCCCCcCCcCCCCCccHHHHH
Q 023442           29 GEAMSVIAA-NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSL-SPTRHFIIHSRKAL-LNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        29 ~eiv~~v~~-~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~-~Gv~~i~VH~Rt~~-~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      .++++.+++ ..+.|+.+=+..  .+   .++..+ +++.+++ +|+|.|.+|--... ..|.  ..+-.-+..-.+.+.
T Consensus        86 ~~~~~~~~~~~~~~p~~v~l~~--~~---~~~~~~-~a~~~~~~~g~d~iei~~~~p~~~~g~--~~~g~~~~~~~eii~  157 (311)
T 1ep3_A           86 TEKLPWLNENFPELPIIANVAG--SE---EADYVA-VCAKIGDAANVKAIELNISCPNVKHGG--QAFGTDPEVAAALVK  157 (311)
T ss_dssp             HTHHHHHHHHCTTSCEEEEECC--SS---HHHHHH-HHHHHTTSTTEEEEEEECCSEEGGGTT--EEGGGCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEEcC--CC---HHHHHH-HHHHHhccCCCCEEEEeCCCCCCCCch--hhhcCCHHHHHHHHH
Confidence            445666766 337788776642  22   333333 4556677 99999999953211 0110  000000011134455


Q ss_pred             HHHhcCCCceEEE--ccCCCCHHHH-HHHHHcCCCEEEe
Q 023442          106 ALLRDFPDLTFTL--NGGINTVDEV-NAALRKGAHHVMV  141 (282)
Q Consensus       106 ~l~~~~~~ipVi~--nGdI~s~eda-~~~l~~g~DgVmI  141 (282)
                      ++.+. .++||+.  +.++.+..++ +.+.+.|+|+|.+
T Consensus       158 ~v~~~-~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v  195 (311)
T 1ep3_A          158 ACKAV-SKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTM  195 (311)
T ss_dssp             HHHHH-CSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHh-cCCCEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence            55544 3788864  4466776664 4444599999998

>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A

Probab=80.16  E-value=6.8  Score=37.29  Aligned_cols=96  Identities=10%  Similarity=0.125  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           25 PKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        25 p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      ++.-.+.+++|++++  ++++.|...-+|+.    .+..+ +++.+++.++.+|.        +        .+++-+++
T Consensus       199 ~~~di~rv~avRea~G~d~~L~vDaN~~wt~----~~Ai~-~~~~Le~~~l~~iE--------E--------Pl~~dd~~  257 (455)
T 3fxg_A          199 LRKNVEFLRKHREAVGPDFPIMVDCYMSLNV----SYTIE-LVKACLDLNINWWE--------E--------CLSPDDTD  257 (455)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCEEEECTTCCCH----HHHHH-HHHHTGGGCCSEEE--------C--------CSCGGGGG
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEEeCCCCCCH----HHHHH-HHHhcccCCcceec--------C--------CCCcchHH
Confidence            445566677888776  57788877767753    22223 35566777776652        1        11222345


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ..+++.+..+.+||.+.=.+.|..|+.++++ ..+|.|.+
T Consensus       258 ~la~L~~~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~  297 (455)
T 3fxg_A          258 GFALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQP  297 (455)
T ss_dssp             GHHHHHHHCTTSEEEECTTCCHHHHHHHHHTTCCCSEECC
T ss_pred             HHHHHHHhCCCCeEECCCccCCHHHHHHHHHcCCCCEEEE
Confidence            5566666544588877777999999999998 66887643

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=80.09  E-value=16  Score=32.37  Aligned_cols=100  Identities=13%  Similarity=0.087  Sum_probs=58.8

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+  |-.   +..+.++ .++.++++|+|++-+..-.  |...+..    
T Consensus        52 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~ai~-la~~a~~~Gadavlv~~P~--y~~~~~~----  119 (297)
T 3flu_A           52 GESATLSVEEHTAVIEAVVKHVAKRVPVIAGT--GAN---NTVEAIA-LSQAAEKAGADYTLSVVPY--YNKPSQE----  119 (297)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SHHHHHH-HHHHHHHTTCSEEEEECCC--SSCCCHH----
T ss_pred             cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCc---CHHHHHH-HHHHHHHcCCCEEEECCCC--CCCCCHH----
Confidence            3333334555567777776655  58998854  322   2345554 3566789999999887532  2111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR  133 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~  133 (282)
                         .-++++.++++. .++||+ +|     |--.+++.+.++.+
T Consensus       120 ---~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La~  159 (297)
T 3flu_A          120 ---GIYQHFKTIAEA-TSIPMIIYNVPGRTVVSMTNDTILRLAE  159 (297)
T ss_dssp             ---HHHHHHHHHHHH-CCSCEEEEECHHHHSSCCCHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHh-CCCCEEEEECCchhccCCCHHHHHHHHc
Confidence               114566677665 478875 44     55567888877765

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=80.02  E-value=8.9  Score=33.72  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-----ccC-CCCHHHHHHHH-------H
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-----NGG-INTVDEVNAAL-------R  133 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~-----nGd-I~s~eda~~~l-------~  133 (282)
                      .+++.|++.|.+=..- ...|.+|.         +..+..+++. .+|||..     .|| +.|.++++.|.       +
T Consensus        16 ~A~~~GAdRIELc~~L-~~GGlTPS---------~g~i~~~~~~-~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~   84 (256)
T 1twd_A           16 TAQQNGADRVELCAAP-KEGGLTPS---------LGVLKSVRQR-VTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRE   84 (256)
T ss_dssp             HHHHTTCSEEEECBCG-GGTCBCCC---------HHHHHHHHHH-CCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEcCCc-ccCCCCCC---------HHHHHHHHHH-cCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence            4578999999987533 23566542         5666566554 5788865     565 45665555544       3


Q ss_pred             cCCCEEEec
Q 023442          134 KGAHHVMVG  142 (282)
Q Consensus       134 ~g~DgVmIG  142 (282)
                      .|+|||.+|
T Consensus        85 ~GadGvV~G   93 (256)
T 1twd_A           85 LGFPGLVTG   93 (256)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCEEEEe
Confidence            799999999

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=80.01  E-value=17  Score=32.57  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             cccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      |-+..-..+.-.++++.+.+.+  ++||.+-+  |-.   +..+.++ +++.++++|+|++-+-.-.  |...+..    
T Consensus        68 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv--g~~---st~eai~-la~~A~~~Gadavlv~~P~--y~~~s~~----  135 (314)
T 3qze_A           68 GESATLDVEEHIQVIRRVVDQVKGRIPVIAGT--GAN---STREAVA-LTEAAKSGGADACLLVTPY--YNKPTQE----  135 (314)
T ss_dssp             GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SHHHHHH-HHHHHHHTTCSEEEEECCC--SSCCCHH----
T ss_pred             cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCc---CHHHHHH-HHHHHHHcCCCEEEEcCCC--CCCCCHH----
Confidence            4333334555566777666654  58998854  322   2345554 3566789999999887532  1111110    


Q ss_pred             CCCccHHHHHHHHhcCCCceEE-Ec-----cCCCCHHHHHHHHH-cCCCEE
Q 023442           96 IPPLKYEYYYALLRDFPDLTFT-LN-----GGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi-~n-----GdI~s~eda~~~l~-~g~DgV  139 (282)
                         --++++.++++. .++||+ +|     |--.+++.+.++.+ ..+-||
T Consensus       136 ---~l~~~f~~va~a-~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgi  182 (314)
T 3qze_A          136 ---GMYQHFRHIAEA-VAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGI  182 (314)
T ss_dssp             ---HHHHHHHHHHHH-SCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred             ---HHHHHHHHHHHh-cCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence               114566677665 478875 44     65668888888776 333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1ep3a_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	5e-16
d1vhna_	305	c.1.4.1 (A:) Putative flavin oxidoreducatase TM009	2e-10
d1gtea2	312	c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas	2e-08
d1ps9a1	330	c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter	1e-05
d1djqa1	340	c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-	2e-04

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 74.3 bits (181), Expect = 5e-16
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 11/155 (7%)

Query: 1   MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
             +  CP+ K  G          DP+     +    A + VP+ VK    V D     + 
Sbjct: 130 ELNISCPNVKHGGQAF-----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKA 184

Query: 61  C-----DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT 115
                 D +  +++L   R  +   +  L N         I P+  +  + + +D   + 
Sbjct: 185 VEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVD-IP 243

Query: 116 FTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW 150
               GG+    +V      GA  V VG A + +P+
Sbjct: 244 IIGMGGVANAQDVLEMYMAGASAVAVGTANFADPF 278

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 24/232 (10%)

Query: 4   CGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDF 63
            GCP  KV   G  G  L  D +     +  +  + +   SVK R+G + ++        
Sbjct: 87  AGCPVRKVVKEGAGGALLK-DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRIL 145

Query: 64  IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGIN 123
           +             IH+R  + +                 + AL      +   ++G I 
Sbjct: 146 VE-----EGVDEVFIHTRTVVQS-----------FTGRAEWKALSVLEKRIPTFVSGDIF 189

Query: 124 TVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDTAIYGAPSSGLTRRQVVEKYQIYGD 182
           T ++   AL + G   ++V R A   PW     +   +     S  +R +++  ++ + +
Sbjct: 190 TPEDAKRALEESGCDGLLVARGAIGRPW-IFKQIKDFLRSGKYSEPSREEILRTFERHLE 248

Query: 183 AILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLE 234
            ++ T G  R  V ++ K L  +     G   F+ K        + V+   E
Sbjct: 249 LLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREK----VMKIEEVQILKE 295

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 25/162 (15%), Positives = 41/162 (25%), Gaps = 12/162 (7%)

Query: 1   MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
                   P   G    G++   DP+ V      +     +P   K    V D  S  + 
Sbjct: 132 ALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARA 191

Query: 61  C-----------DFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLR 109
                       + +  +  L                         I P+       + R
Sbjct: 192 AKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIAR 251

Query: 110 DFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW 150
             P       GGI++ +     L  GA  + V  A   Q+  
Sbjct: 252 ALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFT 293

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 2/136 (1%)

Query: 16  CFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDS-YNQLCDFIYKVSSLSPTR 74
            +G       +F  E +  +         +  R+ + D         + +    ++    
Sbjct: 182 QWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAG 241

Query: 75  HFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK 134
             II++         P     +P   + +    L+    L       IN     +  L +
Sbjct: 242 ATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301

Query: 135 G-AHHVMVGRAAYQNP 149
           G A  V + R    + 
Sbjct: 302 GDADMVSMARPFLADA 317

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 5/154 (3%)

Query: 1   MPSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQL 60
           +P              +G SL    +F  E +  +        ++  R GVD      Q+
Sbjct: 175 LPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQI 234

Query: 61  CDFIYKVSSLSPTRHFI----IHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTF 116
              +     +      +    I        G     +R         +  L++       
Sbjct: 235 EAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPV 294

Query: 117 TLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNP 149
              G     +++   + KG A  +   R +  +P
Sbjct: 295 LGVGRYTDPEKMIEIVTKGYADIIGCARPSIADP 328

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	100.0
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.85
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	99.76
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	99.66
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	99.65
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	99.58
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.44
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	99.31
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	99.29
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	99.27
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	99.25
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	99.24
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	99.16
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	99.13
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.08
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.02
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.89
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.88
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.73
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.7
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.66
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.57
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	98.57
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	98.47
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	98.37
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	98.36
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.22
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	98.05
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	97.98
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	97.95
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	97.9
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	97.88
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	97.72
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	97.53
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	97.47
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	97.46
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	97.39
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	97.31
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	97.29
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	97.22
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	97.09
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	97.05
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	97.05
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	96.99
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.98
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	96.97
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.9
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	96.87
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	96.77
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	96.73
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	96.72
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	96.6
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	96.57
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.5
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	96.43
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	96.36
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	96.32
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	96.02
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	95.9
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	95.88
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	95.73
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	95.49
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	95.44
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	95.32
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	95.23
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	95.05
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	94.98
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	94.93
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	94.92
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	94.89
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	94.71
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	94.59
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	94.55
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	94.5
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	94.39
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	94.33
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	94.19
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	94.04
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	93.77
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	93.53
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	93.46
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	92.83
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	92.24
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	92.08
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	91.71
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	91.22
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	91.04
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	91.01
d1n55a_	249	Triosephosphate isomerase {Leishmania mexicana [Ta	90.64
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	90.6
d2gl5a1	278	Putative dehydratase protein STM2273 {Salmonella t	90.5
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	90.4
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	90.35
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	89.68
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	89.49
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	89.44
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	88.95
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	88.85
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	88.43
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	88.4
d2mnra1	227	Mandelate racemase {Pseudomonas putida [TaxId: 303	88.11
d1tzza1	247	Hypothetical protein Bll6730 {Bradyrhizobium japon	88.07
d1yeya1	252	RTS beta protein {Xanthomonas campestris pv. campe	88.06
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	88.02
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	87.84
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	87.53
d1kv5a_	249	Triosephosphate isomerase {Trypanosoma brucei [Tax	87.07
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	86.95
d1r2ra_	246	Triosephosphate isomerase {Rabbit (Oryctolagus cun	86.74
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	86.58
d1wufa1	244	N-acylamino acid racemase {Listeria innocua [TaxId	86.54
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	86.0
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	86.0
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	85.59
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	85.23
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	84.76
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	84.51
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	84.42
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	84.19
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	84.08
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	83.59
d1aw1a_	255	Triosephosphate isomerase {Vibrio marinus [TaxId:	83.49
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	83.16
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	82.43
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	82.26
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	82.25
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	82.01
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	81.98
d1neya_	247	Triosephosphate isomerase {Baker's yeast (Saccharo	81.65
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	81.01
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	80.98
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	80.52
d1b9ba_	252	Triosephosphate isomerase {Thermotoga maritima [Ta	80.18
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	80.13
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	80.1

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.6e-52  Score=384.53  Aligned_cols=219  Identities=21%  Similarity=0.350  Sum_probs=188.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||||||+++|+++|. ||+||++|+++.+|++++++++++|||||+|+|||+.+ ..++    ++.++++|+++|+||||
T Consensus        85 lN~GCP~~~v~~~g~-Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~-~~~~----~~~l~~~G~~~itvH~R  158 (305)
T d1vhna_          85 LNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE-VEEI----YRILVEEGVDEVFIHTR  158 (305)
T ss_dssp             EEECCCCHHHHHTTC-GGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCC-HHHH----HHHHHHTTCCEEEEESS
T ss_pred             EEEEecchhhccccc-ceeeccCHHHHHHHhhhhhhhcccccccccccCcccch-hhHH----HHHHHHhCCcEEEechh
Confidence            899999999998775 99999999999999999999999999999999998754 3333    45678999999999999


Q ss_pred             CcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhHhhh
Q 023442           82 KALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVDTAI  160 (282)
Q Consensus        82 t~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~~~~  160 (282)
                      |+.+.+.++++|+.|+.++           .++|||+||||+|++|+.++++ +||||||||||++.||||| .+++..+
T Consensus       159 t~~q~~~~~a~~~~i~~~~-----------~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if-~~i~~~l  226 (305)
T d1vhna_         159 TVVQSFTGRAEWKALSVLE-----------KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF-KQIKDFL  226 (305)
T ss_dssp             CTTTTTSSCCCGGGGGGSC-----------CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHH-HHHHHHH
T ss_pred             hhhhccccchhhhHHHhhh-----------hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHh-hhhhhhh
Confidence            9877666667765544322           3799999999999999999998 9999999999999999997 7777655


Q ss_pred             hCCCCCcccHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccCCCChHHHHHHHHHHhhHHHHHHHHHHHHHhC
Q 023442          161 YGAPSSGLTRRQVVEKYQIYGDAILGTYGNNRPHVRDVMKPLLHFFHSEPGNGLFKRKADAAFQTCKTVKSFLEETIVAI  240 (282)
Q Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~rk~~~~y~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~  240 (282)
                      .+.+...+++.++++.+.+|++.+.++||+ ..++..+|||+.||++++|++++||+++++ +.+.+++.++++++++++
T Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~-~~~l~~~rkhl~~~~kg~p~ak~~R~~l~~-~~~~~el~~~l~~~~~e~  304 (305)
T d1vhna_         227 RSGKYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTKDLKGARRFREKVMK-IEEVQILKEMFYNFIKEV  304 (305)
T ss_dssp             HHSCCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTTTCTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHH
T ss_pred             cCCCcccchhHHHHHhHHHHHHHHHHhcCc-chHHHHHHHHHHHHHcCCCcHHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            544444568889999999999999999997 678899999999999999999999999975 478888888888888775

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.85  E-value=1.3e-21  Score=177.00  Aligned_cols=141  Identities=21%  Similarity=0.286  Sum_probs=110.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||+|||+.+    +. +.....+++++.++++++++.+++|+++|++.++.+.   .+    +++.++++|++.++++.+
T Consensus       131 lN~~cP~~~----~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~~~---~~----~a~~~~~~~~~~~~~~n~  198 (311)
T d1ep3a_         131 LNISCPNVK----HG-GQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTDI---VP----IAKAVEAAGADGLTMINT  198 (311)
T ss_dssp             EECCSEEGG----GT-TEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCS---HH----HHHHHHHTTCSEEEECCC
T ss_pred             cccCCCccc----cc-ccccccCHHHHHHHHHHHHhccCCCeeeeecccccch---HH----HHHHHHHhhhheeEEEee
Confidence            799999743    22 5677899999999999999999999999999987653   23    345667899999999876


Q ss_pred             Ccc------------cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCC
Q 023442           82 KAL------------LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNP  149 (282)
Q Consensus        82 t~~------------~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP  149 (282)
                      +..            ..+.....++.+.+..|+++.++++. .++|||+||||+|++|+.+++.+|||+||||||++.||
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~-~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P  277 (311)
T d1ep3a_         199 LMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADP  277 (311)
T ss_dssp             EEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCT
T ss_pred             ccccccccccccccccccCCCCCCCcccchhHHHHHHHhhh-cceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCC
Confidence            421            01111122345556678888888775 58999999999999999999999999999999999999


Q ss_pred             ccchhhh
Q 023442          150 WYTLGHV  156 (282)
Q Consensus       150 ~if~~~~  156 (282)
                      |+| .++
T Consensus       278 ~i~-~~I  283 (311)
T d1ep3a_         278 FVC-PKI  283 (311)
T ss_dssp             THH-HHH
T ss_pred             hHH-HHH
Confidence            986 443

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.76  E-value=1.6e-18  Score=157.19  Aligned_cols=141  Identities=18%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+. ...++ +|..+..+|+.+.++++++++.+++||.||++..+++   ..+    +++.++++|++.|+++.+
T Consensus       135 lN~scPn~-~~~~~-~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~---~~~----i~~~~~~~g~~gi~~~n~  205 (312)
T d1gtea2         135 LNLSCPHG-MGERG-MGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTD---IVS----IARAAKEGGADGVTATNT  205 (312)
T ss_dssp             EECCCBCC-CC------SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSC---HHH----HHHHHHHHTCSEEEECCC
T ss_pred             eccCCCCc-ccccc-cchhhhhhHHHHHHHHHHHhhccCCceeecccccchh---HHH----HHHHHHHhcccceEEEee
Confidence            79999985 33344 4888999999999999999999999999999876543   333    345677899999999865


Q ss_pred             CcccC------------------CCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           82 KALLN------------------GISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        82 t~~~~------------------G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      .....                  +.+.-.++.+.|..++.++++.+..+++|||++|||.|.+|+.+++..|||+||||+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~t  285 (312)
T d1gtea2         206 VSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCS  285 (312)
T ss_dssp             EEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred             cccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECH
Confidence            32100                  000011223445567778888777778999999999999999999999999999999


Q ss_pred             HhhhC-Ccc
Q 023442          144 AAYQN-PWY  151 (282)
Q Consensus       144 gal~n-P~i  151 (282)
                      +++.+ |.+
T Consensus       286 a~~~~G~~~  294 (312)
T d1gtea2         286 AVQNQDFTV  294 (312)
T ss_dssp             HHHTSCTTH
T ss_pred             hhhccChHH
Confidence            99987 554

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.66  E-value=7.5e-16  Score=141.24  Aligned_cols=139  Identities=13%  Similarity=0.103  Sum_probs=104.3

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCC--CCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCC
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDD--HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGIS   89 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~--~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~   89 (282)
                      .+++.||+++.++.+++.||+++|+++++.|+.|+++.....  ..+.++... +++.++++|+|.+.++.......   
T Consensus       180 ~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~-~~~~l~~~g~d~~~~s~g~~~~~---  255 (337)
T d1z41a1         180 HRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIG-FAKWMKEQGVDLIDCSSGALVHA---  255 (337)
T ss_dssp             CCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHH-HHHHHHHTTCCEEEEECCCSSCC---
T ss_pred             cccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHH-HHHHHHHcCCccccccccccccc---
Confidence            468899999999999999999999999999999988853211  124556554 56788999999999987643211   


Q ss_pred             cCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHc-CCCEEEecHHhhhCCccchhhhHh
Q 023442           90 PAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRK-GAHHVMVGRAAYQNPWYTLGHVDT  158 (282)
Q Consensus        90 ~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~-g~DgVmIGRgal~nP~if~~~~~~  158 (282)
                        +. ..+|-.+..+.+.+++.+++||+++|+|+|+++++++++. .||.|++||+++.||++. ..+.+
T Consensus       256 --~~-~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~-~k~~~  321 (337)
T d1z41a1         256 --DI-NVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFA-RTAAK  321 (337)
T ss_dssp             --CC-CCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHH-HHHHH
T ss_pred             --cc-ccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHH-HHHHh
Confidence              11 1112223333344444568999999999999999999994 599999999999999984 55543

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.8e-16  Score=143.80  Aligned_cols=141  Identities=11%  Similarity=0.105  Sum_probs=104.0

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCC----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCC
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDH----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNG   87 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G   87 (282)
                      .+++.||+++.+|.+++.||+++|+++++.++.|.+|+++++.    .+.++..+ +++.++++|++.+.++.....  .
T Consensus       178 ~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~-~~~~l~~~g~d~~~~~~g~~~--~  254 (330)
T d1ps9a1         178 QRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVE-LAQAIEAAGATIINTGIGWHE--A  254 (330)
T ss_dssp             CCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHH-HHHHHHHHTCSEEEEEECBTT--C
T ss_pred             cccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHH-HHHHHHHhhhhhhhccccccc--c
Confidence            3689999999999999999999999999655555666654432    24666665 567889999999999864321  1


Q ss_pred             CCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           88 ISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        88 ~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      ..+......+...+..+.+.+++.+++||+++|+|+|+++++++++ ..||.|++||+++.||++. ..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~-~k~  323 (330)
T d1ps9a1         255 RIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELL-SKA  323 (330)
T ss_dssp             SSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHH-HHH
T ss_pred             cccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHH-HHH
Confidence            1111111223333555555566667999999999999999999999 4599999999999999985 443

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.58  E-value=2.1e-15  Score=138.30  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=95.1

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCC------CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIG------VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA   83 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G------~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~   83 (282)
                      .+++.||+++.+|.+++.||+++|++++  ++||.+|+...      ..+.+.  ...  ....+++.|+|.+.|+...-
T Consensus       186 ~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~--~~~--~~~~l~~~~vd~~~vs~g~~  261 (340)
T d1djqa1         186 KRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEV--DGQ--KFVEMADSLVDMWDITIGDI  261 (340)
T ss_dssp             CCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTT--HHH--HHHHHHTTTCSEEEEEESCS
T ss_pred             cccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhh--hHH--HHHHHHhhccceeeeeeccc
Confidence            3578999999999999999999999998  46666665431      111111  111  12346689999999986431


Q ss_pred             ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhhhCCccchhhh
Q 023442           84 LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        84 ~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal~nP~if~~~~  156 (282)
                      ...+.........++..+..+.+.+++..++|||++|+|+|+++++++++.| ||+|++||+++.||++. ..+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~-~k~  334 (340)
T d1djqa1         262 AEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLP-QKV  334 (340)
T ss_dssp             TTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHH-HHH
T ss_pred             ccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHH-HHH
Confidence            1101000001111122233344556666799999999999999999999954 99999999999999974 444

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=99.44  E-value=3.3e-13  Score=121.31  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=98.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||+-  .  +  +..+..+++.+.++++++++.+++||.+|+...++.    .++ ..+++.+.+.|++.++....
T Consensus       126 lNiscPn~--~--~--~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~----~~~-~~~~~~~~~~~~~~i~~~~~  194 (311)
T d1juba_         126 LNLSCPNV--P--G--EPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL----VHF-DIMAEILNQFPLTYVNSVNS  194 (311)
T ss_dssp             EESCCCCS--S--S--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH----HHH-HHHHHHHTTSCCCEEEECCC
T ss_pred             eccccccc--c--c--cccccccHHHHHHHHHHhhcccccceeecccccchh----hHH-HHHHHHHHhhccceEecccc
Confidence            79999973  2  2  344678999999999999999999999999865432    222 22455667889998876532


Q ss_pred             Cc---------------ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh
Q 023442           82 KA---------------LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA  145 (282)
Q Consensus        82 t~---------------~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga  145 (282)
                      ..               ...|.+...+..+.|.....+.++.+.. +++|||++|||+|.+|+.+++..|||.|++++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal  274 (311)
T d1juba_         195 IGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTAL  274 (311)
T ss_dssp             EEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred             ccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhh
Confidence            10               0011111112223333445556665543 4799999999999999999999999999999998


Q ss_pred             h-hCCccc
Q 023442          146 Y-QNPWYT  152 (282)
Q Consensus       146 l-~nP~if  152 (282)
                      + ..|+++
T Consensus       275 ~~~Gp~~i  282 (311)
T d1juba_         275 HKEGPAIF  282 (311)
T ss_dssp             HHHCTHHH
T ss_pred             HhcChHHH
Confidence            6 448874

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.31  E-value=3.7e-12  Score=119.17  Aligned_cols=139  Identities=12%  Similarity=0.087  Sum_probs=98.8

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC------------------------------------------
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT------------------------------------------   39 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~------------------------------------------   39 (282)
                      ||.+||.-      . |..-+++++.+.++++++++..                                          
T Consensus       184 lNiScPNt------~-glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (409)
T d1tv5a1         184 INVSSPNT------P-GLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDN  256 (409)
T ss_dssp             EECCCTTS------T-TGGGGGSHHHHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred             eccccccc------c-ccccccCHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhccccccccccccccchhh
Confidence            89999983      1 4445689999999999997642                                          


Q ss_pred             ---------CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc-------CCCCcCCcCCCCCccHHH
Q 023442           40 ---------NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL-------NGISPAENRTIPPLKYEY  103 (282)
Q Consensus        40 ---------~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~-------~G~~~ad~~~i~~~~~~~  103 (282)
                               ..||.||+..-.++    +++. .+++.+++.|++.+++...+...       .+.++-.++.+.|.....
T Consensus       257 ~~~~~~~~~~ppi~vKlsPd~~~----~~i~-~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~  331 (409)
T d1tv5a1         257 FLWFNTTKKKPLVFVKLAPDLNQ----EQKK-EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF  331 (409)
T ss_dssp             CCCCSSSSSCCEEEEEECSCCCH----HHHH-HHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHH
T ss_pred             hhhccccccCCceEEEeCCCCCc----hhhH-HHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHH
Confidence                     23899999864433    2222 34567789999999998644211       111111122344445666


Q ss_pred             HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh-hhCCccc
Q 023442          104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPWYT  152 (282)
Q Consensus       104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga-l~nP~if  152 (282)
                      ++++.+.. .++||||.|||.|++||.+++..|||.|+|+.|+ +..|.++
T Consensus       332 v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v  382 (409)
T d1tv5a1         332 ICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSA  382 (409)
T ss_dssp             HHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHH
T ss_pred             HHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHH
Confidence            77776654 4699999999999999999999999999999998 5669985

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=5.9e-12  Score=116.43  Aligned_cols=133  Identities=16%  Similarity=0.153  Sum_probs=91.7

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecC-----CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRI-----GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~-----G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      .++|.||+++.+|.+++.||+++||++++ ..|.+++..     |..+. ........+++.++..|++.+.++..... 
T Consensus       200 ~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~-~~~~~~~~~~~~ld~~~i~~~~~~~~~~~-  277 (374)
T d1gwja_         200 RRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDD-EPEAMAFYLAGELDRRGLAYLHFNEPDWI-  277 (374)
T ss_dssp             CCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCS-CHHHHHHHHHHHHHHHTCSEEEEECSCBT-
T ss_pred             ccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCccc-chHHHHHHhhccccccCceEEEeccCccc-
Confidence            36799999999999999999999999984 344444332     11111 22233333456678899999999864321 


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                       +.   + ...++ .|  ...+ ++..++||+++|+| +++.++++++ ..||.|++||+++.||.+. ..++
T Consensus       278 -~~---~-~~~~~-~~--~~~i-~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~-~K~~  339 (374)
T d1gwja_         278 -GG---D-ITYPE-GF--REQM-RQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLP-ERFR  339 (374)
T ss_dssp             -TB---C-CCCCT-TH--HHHH-HHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHHH
T ss_pred             -CC---C-cchhH-HH--HHHH-HHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHH-HHHH
Confidence             11   0 01111 12  2233 33468999999999 8999999999 5699999999999999974 4443

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.27  E-value=1.9e-11  Score=112.48  Aligned_cols=131  Identities=13%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCCC--CC----CCcHHHHHHHHHHHHHhCCCCEEEEecCCccc
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGV--DD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRKALL   85 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~--d~----~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~   85 (282)
                      +++.||+++.+|.+++.||+++|+++++ -+|.+++...-  ++    ..+.++.+. +++.+++.|+|.|.++..+.. 
T Consensus       198 RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~-~~~~l~~~gvd~i~vs~~~~~-  275 (363)
T d1vyra_         198 RTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALY-LIEELAKRGIAYLHMSETDLA-  275 (363)
T ss_dssp             CCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHH-HHHHHHHTTCSEEEEECCBTT-
T ss_pred             cccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHH-HHHHHHhcCCeeeecccCCcc-
Confidence            6799999999999999999999999984 34767665311  11    123556554 466788999999999854311 


Q ss_pred             CCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcC-CCEEEecHHhhhCCccchhhhH
Q 023442           86 NGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKG-AHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        86 ~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g-~DgVmIGRgal~nP~if~~~~~  157 (282)
                      .+         ++. ...+.+.+++..++||+++|. .|++.++++++.| ||.|.+||+++.||.+. ..++
T Consensus       276 ~~---------~~~-~~~~~~~~~~~~~~~vi~~G~-~t~~~ae~~l~~G~~DlV~~gR~liadP~~~-~K~~  336 (363)
T d1vyra_         276 GG---------KPY-SEAFRQKVRERFHGVIIGAGA-YTAEKAEDLIGKGLIDAVAFGRDYIANPDLV-ARLQ  336 (363)
T ss_dssp             BC---------CCC-CHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHHH
T ss_pred             CC---------ccc-cHHHHHHHHHhcCceEEecCC-CCHHHHHHHHHCCCcceehhhHHHHHCccHH-HHHH
Confidence            11         111 233344444446889998885 5999999999955 99999999999999974 4443

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=113.78  Aligned_cols=146  Identities=13%  Similarity=0.022  Sum_probs=87.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||++||.-...+.......+......+.+....++..+++|+.+|+....+.    .++.. +++.+.++|++.|+.-..
T Consensus       182 lNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~----~~i~~-~a~~~~~~g~~gi~~~nt  256 (367)
T d1d3ga_         182 VNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS----QDKED-IASVVKELGIDGLIVTNT  256 (367)
T ss_dssp             EESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH----HHHHH-HHHHHHHHTCCEEEECCC
T ss_pred             cccccccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccch----hhhhh-hHHHHHhhhhheeecccc
Confidence            7999998422111110111111222222333333334578999999864322    23332 345667889999998644


Q ss_pred             Cccc---------CCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHh-hhCCc
Q 023442           82 KALL---------NGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAA-YQNPW  150 (282)
Q Consensus        82 t~~~---------~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRga-l~nP~  150 (282)
                      +...         .+.+.-.+..++++....+..+.+.. .++|||++|||.|++|+.+++..|||.|+|+.++ +.+|.
T Consensus       257 ~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~  336 (367)
T d1d3ga_         257 TVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPP  336 (367)
T ss_dssp             BSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTH
T ss_pred             cccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcH
Confidence            3100         00011112234454555565554432 4799999999999999999999999999999997 68999


Q ss_pred             cc
Q 023442          151 YT  152 (282)
Q Consensus       151 if  152 (282)
                      ++
T Consensus       337 ii  338 (367)
T d1d3ga_         337 VV  338 (367)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=1.6e-11  Score=110.41  Aligned_cols=138  Identities=17%  Similarity=0.223  Sum_probs=93.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR   81 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R   81 (282)
                      ||.+||+-  .  +  +..+-.+++.+.++++++++.+++|+.+|+-...+. ..+..   ..+.+.+..+++.+.....
T Consensus       126 lNiScPn~--~--~--~~~~~~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~-~~~~~---~~~~~~~~~~~~~i~~~nt  195 (312)
T d2b4ga1         126 LNLSCPNV--P--G--KPQVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDI-AHFDM---AAAVLNDFPLVKFITCVNS  195 (312)
T ss_dssp             EECCCCCS--T--T--CCCGGGCHHHHHHHHHHHHHHHCSCEEEEECCCCCH-HHHHH---HHHHHTTCTTEEEEEECCC
T ss_pred             eccccCCc--C--c--chhhhccHHHHHHHHHHhhccccccceeccccccch-hHHHH---HHHHHHhhhhhhhhhhccc
Confidence            79999972  2  2  344668899999999999999999999999763332 11211   1222223334444433210


Q ss_pred             ----------C-c-------ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           82 ----------K-A-------LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        82 ----------t-~-------~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                                + .       .+.|.+   ++.+.|.....++++.+..+..|||++|||.|++|+.+++..||+.|+++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~GGlS---G~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~T  272 (312)
T d2b4ga1         196 IGNGLVIDPANETVVIKPKQGFGGLG---GKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGT  272 (312)
T ss_dssp             EEEEECEETTTTEESCCGGGGEEEEE---EGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESH
T ss_pred             ccccccccccCCCccccccccccCcc---cccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeeh
Confidence                      0 0       012221   223344456667777777778899999999999999999999999999999


Q ss_pred             Hhh-hCCccc
Q 023442          144 AAY-QNPWYT  152 (282)
Q Consensus       144 gal-~nP~if  152 (282)
                      +++ ..|.++
T Consensus       273 al~~~Gp~~i  282 (312)
T d2b4ga1         273 ALHDEGPIIF  282 (312)
T ss_dssp             HHHHHCTTHH
T ss_pred             hhHhcCcHHH
Confidence            985 559875

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=7.2e-11  Score=107.20  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=90.4

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHH---------hhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVI---------AANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSP   72 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v---------~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~G   72 (282)
                      ||++||.  +.  |   ...+.+.+.+.+.+.++         +...++||.+|+..-.+.    .++. .++..+.+.|
T Consensus       171 lNiScPN--~~--g---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsp~~~~----~~i~-~~a~~~~~~g  238 (336)
T d1f76a_         171 INISSPN--TP--G---LRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSE----EELI-QVADSLVRHN  238 (336)
T ss_dssp             EECCCSS--ST--T---GGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCH----HHHH-HHHHHHHHTT
T ss_pred             ecccchh--hh--c---ccccccchhhccchhhhhhhhhhhhhhccCcCCcccccchhhhh----hhhh-hhHHHHHhcC
Confidence            7999997  22  2   22334555444444433         233578999999753321    2222 2455667899


Q ss_pred             CCEEEEecCCc---------ccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           73 TRHFIIHSRKA---------LLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        73 v~~i~VH~Rt~---------~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ++.++.-..+.         ...+.++-.+..+.+.....++++.+.. .++|||+.|||.|.+|+.+++..||++|+||
T Consensus       239 ~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~  318 (336)
T d1f76a_         239 IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY  318 (336)
T ss_dssp             CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred             ccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHH
Confidence            99998753221         0011111112233444455566665543 4799999999999999999999999999999


Q ss_pred             HHh-hhCCccchhhh
Q 023442          143 RAA-YQNPWYTLGHV  156 (282)
Q Consensus       143 Rga-l~nP~if~~~~  156 (282)
                      .++ +.+|.++ .++
T Consensus       319 Tal~~~Gp~ii-~~I  332 (336)
T d1f76a_         319 SGFIFKGPPLI-KEI  332 (336)
T ss_dssp             HHHHHHCHHHH-HHH
T ss_pred             HHHHhcChHHH-HHH
Confidence            997 6899986 444

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=99.13  E-value=4.8e-11  Score=111.09  Aligned_cols=137  Identities=11%  Similarity=0.006  Sum_probs=82.1

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEecCC-C-------CCCCcHHHHHHHHHHHHHhC---C--CCEEEE
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIG-V-------DDHDSYNQLCDFIYKVSSLS---P--TRHFII   78 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G-~-------d~~~~~~e~~~~v~~~le~~---G--v~~i~V   78 (282)
                      +++.||+++.+|.+++.||+++||+++ +.||.||+... +       ++.....+... ++..++..   |  .+.+.+
T Consensus       209 RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~~~~~~~~~-~a~~l~~~~~~~~~~~~~~~  287 (399)
T d1oyaa_         209 RTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAY-VAGELEKRAKAGKRLAFVHL  287 (399)
T ss_dssp             CCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHH-HHHHHHHHHHTTCCCSEEEE
T ss_pred             cccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcccccCCccccchHHHHHH-HHHHHHHhccccccccceee
Confidence            789999999999999999999999998 35888877531 1       11111222221 22333332   3  333433


Q ss_pred             ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           79 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        79 H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      ....................     ..+.+++..++|||++|+|.+.+++.+.+. .+||.|.+||++|.||.+. ..+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~-----~~~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~-~K~  360 (399)
T d1oyaa_         288 VEPRVTNPFLTEGEGEYEGG-----SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLV-DRL  360 (399)
T ss_dssp             ECTTCSCTTSCTTSSCCCSC-----CTTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHH-HHH
T ss_pred             ecccCCCccccccccccchh-----HHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHH-HHH
Confidence            32221100000000000000     112334456899999999998777666665 7899999999999999974 443

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=99.08  E-value=3.4e-10  Score=103.98  Aligned_cols=133  Identities=17%  Similarity=0.092  Sum_probs=84.1

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCC-ccEEEEecCCCCCC----CcHHHHHHH--HHHHHHhCCCCEEEEecCCcc
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTN-VPVSVKCRIGVDDH----DSYNQLCDF--IYKVSSLSPTRHFIIHSRKAL   84 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~-ipvsvKiR~G~d~~----~~~~e~~~~--v~~~le~~Gv~~i~VH~Rt~~   84 (282)
                      .++|.||+++.+|.+++.||+++||++++ .++.+++.. .++.    .+..+ ...  ....++..+++.+.+......
T Consensus       195 ~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~-~~~~~~~g~~~~~-~~~l~~~~~~~~~d~~~~~~~~~~~~  272 (364)
T d1icpa_         195 DRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISP-FAHYNEAGDTNPT-ALGLYMVESLNKYDLAYCHVVEPRMK  272 (364)
T ss_dssp             CCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-TCCTTTCCCSCHH-HHHHHHHHHHGGGCCSEEEEECCSCC
T ss_pred             CcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecc-cccccCCcCcchH-HHHHHHHHHhhccceeeeeeecCccc
Confidence            47899999999999999999999999984 456666543 2221    11111 111  223344555555555543221


Q ss_pred             cCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhhH
Q 023442           85 LNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHVD  157 (282)
Q Consensus        85 ~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~~  157 (282)
                      ..... .  ..     .+.+..+++. .++||+++|++ |+++++++++ .+||+|++||+++.||++. ..++
T Consensus       273 ~~~~~-~--~~-----~~~~~~i~~~-~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~-~k~~  335 (364)
T d1icpa_         273 TAWEK-I--EC-----TESLVPMRKA-YKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLP-KRFE  335 (364)
T ss_dssp             C---------C-----CCCSHHHHHH-CCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHHH
T ss_pred             ccccc-c--cc-----HHHHHHHHHh-cCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHH-HHHH
Confidence            11100 0  00     0112234443 57899999986 7899999998 6799999999999999974 5443

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=99.02  E-value=8.9e-10  Score=101.58  Aligned_cols=140  Identities=17%  Similarity=0.139  Sum_probs=84.4

Q ss_pred             ccCcccccccCCHHHHHHHHHHHhhcCCc-cEEEEecCCCCCC------CcH---HHHHHHH--HHHHHhCCCCEEEEec
Q 023442           13 GHGCFGVSLMLDPKFVGEAMSVIAANTNV-PVSVKCRIGVDDH------DSY---NQLCDFI--YKVSSLSPTRHFIIHS   80 (282)
Q Consensus        13 ~~g~yGs~Ll~~p~~~~eiv~~v~~~~~i-pvsvKiR~G~d~~------~~~---~e~~~~v--~~~le~~Gv~~i~VH~   80 (282)
                      ++|.||+++.+|.+++.|||++||++++- .+.++. ...++.      ...   .++...+  ...+...+++.+.+..
T Consensus       197 RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~  275 (380)
T d1q45a_         197 RTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRV-SPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQ  275 (380)
T ss_dssp             CCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEE-CTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEEC
T ss_pred             CccccCccccchhhhHHHHHHHHHHHccccCceEEE-eecccccccccccchhhhhhhhhhhhHhhhhccccceeEEecc
Confidence            67999999999999999999999999842 233332 222211      111   1111111  1223456788888874


Q ss_pred             CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhhh
Q 023442           81 RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGHV  156 (282)
Q Consensus        81 Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~~  156 (282)
                      ......+. +......+...+..+.+..+...++||+++|++ +++.++++++ ..||.|.+||+++.||++. +.+
T Consensus       276 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv-~K~  349 (380)
T d1q45a_         276 PRYHAYGQ-TESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPDLV-SRF  349 (380)
T ss_dssp             CC----------------CHHHHHHHHHHHHSCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHH-HHH
T ss_pred             Cccccccc-ccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCccHH-HHH
Confidence            32110111 001111111122223333444568999999997 7999999999 5699999999999999974 443

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.89  E-value=2.4e-09  Score=90.22  Aligned_cols=78  Identities=15%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             HHHhCCCCEEEEecCCc--ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKA--LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~--~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+.+.|++.|.++.+..  ...+.      ......|+.+.++++. .++|||++|||.|++|+.++++.||||||||++
T Consensus       134 ~~~~~g~d~i~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~-~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsA  206 (222)
T d1y0ea_         134 NAARLGFDYIGTTLHGYTSYTQGQ------LLYQNDFQFLKDVLQS-VDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGA  206 (222)
T ss_dssp             HHHHTTCSEEECTTTTSSTTSTTC------CTTHHHHHHHHHHHHH-CCSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHcCCCeEEEeccCCcccccCc------cchhhHHHHHHHHHhc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchh
Confidence            35678999887754421  11111      1122346778777765 589999999999999999999999999999995


Q ss_pred             hhhCCccc
Q 023442          145 AYQNPWYT  152 (282)
Q Consensus       145 al~nP~if  152 (282)
                       +.||+.+
T Consensus       207 -i~rp~~~  213 (222)
T d1y0ea_         207 -ITRPKEI  213 (222)
T ss_dssp             -HHCHHHH
T ss_pred             -hcCHHHH
Confidence             5689875

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.88  E-value=8.9e-09  Score=87.25  Aligned_cols=78  Identities=13%  Similarity=0.039  Sum_probs=54.9

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+.++|++.|.+|+|.....+...      .+..+. +.+..+. .++|||++|||.|++|+.++++.|||+||||++
T Consensus       143 a~~a~~~Gad~i~~~~~~~~~~~~~~------~~~~~~-~~~~~~~-~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsA  214 (230)
T d1yxya1         143 GLVAHQAGIDFVGTTLSGYTPYSRQE------AGPDVA-LIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGA  214 (230)
T ss_dssp             HHHHHHTTCSEEECTTTTSSTTSCCS------SSCCHH-HHHHHHH-TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHH
T ss_pred             HHHHHhcCCCEEEeeccccccccccc------chHHHH-HHHHHhc-CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence            34457899999999887643211111      111122 3344443 589999999999999999999999999999987


Q ss_pred             hhhCCcc
Q 023442          145 AYQNPWY  151 (282)
Q Consensus       145 al~nP~i  151 (282)
                      + .+|.-
T Consensus       215 i-~~p~~  220 (230)
T d1yxya1         215 I-TRPKE  220 (230)
T ss_dssp             H-HCHHH
T ss_pred             h-cCHHH
Confidence            5 46653

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=2.5e-08  Score=86.74  Aligned_cols=126  Identities=12%  Similarity=0.181  Sum_probs=90.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec----------CCCCCCC--cHHHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----------IGVDDHD--SYNQLCDFIYKVSS   69 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR----------~G~d~~~--~~~e~~~~v~~~le   69 (282)
                      ++.||  .+|+    .|+.++++|+++.++++..-... +-+++-++          -+|....  ...+.   + +.++
T Consensus        93 l~~Ga--~kvi----igs~~~~n~~~l~~~~~~~G~~~-iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~  161 (253)
T d1thfd_          93 ILRGA--DKVS----INTAAVENPSLITQIAQTFGSQA-VVVAIDAKRVDGEFMVFTYSGKKNTGILLRDW---V-VEVE  161 (253)
T ss_dssp             HHTTC--SEEE----ESHHHHHCTHHHHHHHHHHCGGG-EEEEEEEEEETTEEEEEETTTTEEEEEEHHHH---H-HHHH
T ss_pred             HhcCC--CEEE----EChHHhhChHHHHHHHHHcCCee-EEEeeeecccCCceeeeeeecccccchhHHHH---H-HHHH
Confidence            45676  6777    68999999999999999985431 22222221          1344322  23333   2 3467


Q ss_pred             hCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           70 LSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        70 ~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.|+..+.++  .|.++.+|.           +++.+.++.+ ..++||+++|||.|.+|+.++...|++||.+|++++.
T Consensus       162 ~~g~~eii~tdI~~dGt~~G~-----------d~~ll~~i~~-~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~  229 (253)
T d1thfd_         162 KRGAGEILLTSIDRDGTKSGY-----------DTEMIRFVRP-LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  229 (253)
T ss_dssp             HTTCSEEEEEETTTTTSCSCC-----------CHHHHHHHGG-GCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             hccCCEEEEEEecccCccCCc-----------cccccccccc-cccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHc
Confidence            8999999998  465555664           3777766654 4689999999999999999999899999999998865


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      +-.
T Consensus       230 ~~~  232 (253)
T d1thfd_         230 REI  232 (253)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.70  E-value=2.9e-08  Score=86.42  Aligned_cols=126  Identities=14%  Similarity=0.158  Sum_probs=90.8

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec----------CCCCCCC--cHHHHHHHHHHHHH
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR----------IGVDDHD--SYNQLCDFIYKVSS   69 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR----------~G~d~~~--~~~e~~~~v~~~le   69 (282)
                      +..||  .+|+    .|+.+..+|+++.++.+..-.. .+-+++-+|          -||.+..  +..++    .+.++
T Consensus        95 l~~G~--~kVi----i~s~~~~~~~~~~~~~~~~G~q-~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~  163 (252)
T d1h5ya_          95 FRAGA--DKVS----VNTAAVRNPQLVALLAREFGSQ-STVVAIDAKWNGEYYEVYVKGGREATGLDAVKW----AKEVE  163 (252)
T ss_dssp             HHHTC--SEEE----ESHHHHHCTHHHHHHHHHHCGG-GEEEEEEEEECSSSEEEEETTTTEEEEEEHHHH----HHHHH
T ss_pred             hhcCC--cEEE----ecccccCCcchHHHHHHhcCCC-cEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHH----HHHHH
Confidence            45566  6676    5889999999999999998653 223333333          2455432  23333    34567


Q ss_pred             hCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           70 LSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        70 ~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.|+..+.++  .|.+..+|.           +++.+.++.+. .++||+++|||.+.+|++++.+.|++||.+|++++.
T Consensus       164 ~~g~~eii~tdI~~dG~~~G~-----------d~~~~~~i~~~-~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~  231 (252)
T d1h5ya_         164 ELGAGEILLTSIDRDGTGLGY-----------DVELIRRVADS-VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF  231 (252)
T ss_dssp             HHTCSEEEEEETTTTTTCSCC-----------CHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             hcCCCEEEEEeecccCccCCc-----------CHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHc
Confidence            8999999998  455555554           37777777654 589999999999999999988899999999988865


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      +-.
T Consensus       232 ~~~  234 (252)
T d1h5ya_         232 RVL  234 (252)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            443

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=4.2e-08  Score=85.18  Aligned_cols=128  Identities=12%  Similarity=0.138  Sum_probs=92.0

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC-CccEEEEec--------CCCCCCC--cHHHHHHHHHHHHHh
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCR--------IGVDDHD--SYNQLCDFIYKVSSL   70 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR--------~G~d~~~--~~~e~~~~v~~~le~   70 (282)
                      +..||  .+|+    .|+.+.++|+++.++.+..-... -.-+.+|.+        -||....  +..++   + +.+++
T Consensus        93 l~~Ga--~kVi----i~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~  162 (251)
T d1ka9f_          93 LLSGA--DKVS----VNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEW---A-VKGVE  162 (251)
T ss_dssp             HHHTC--SEEE----ECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHH---H-HHHHH
T ss_pred             HHcCC--CEEE----ECchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHH---H-HHHHh
Confidence            34566  5666    58899999999999999886542 222333322        2565433  23333   2 34578


Q ss_pred             CCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           71 SPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        71 ~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .|+..+.++  .|.++.+|.           +++.+.++.+. .++|+|+.||+.+.+|+.++.+.|++||++|++++.+
T Consensus       163 ~g~~eii~tdi~~dG~~~G~-----------d~~l~~~i~~~-~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g  230 (251)
T d1ka9f_         163 LGAGEILLTSMDRDGTKEGY-----------DLRLTRMVAEA-VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG  230 (251)
T ss_dssp             HTCCEEEEEETTTTTTCSCC-----------CHHHHHHHHHH-CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred             cCCCEEEEEeecccCccCCc-----------chhHHHHHHhh-cceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcC
Confidence            999999998  466665664           27777777664 5899999999999999999999999999999987755


Q ss_pred             Ccc
Q 023442          149 PWY  151 (282)
Q Consensus       149 P~i  151 (282)
                      -.-
T Consensus       231 ~~~  233 (251)
T d1ka9f_         231 EIP  233 (251)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.57  E-value=1.4e-07  Score=81.14  Aligned_cols=125  Identities=18%  Similarity=0.387  Sum_probs=85.9

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC-cHHHHHHHHHHHHHhCCCC
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD-SYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~-~~~e~~~~v~~~le~~Gv~   74 (282)
                      +++|+  .+|+    .|+.+.++|+++.++.+...+.+  -|++..|      -||.... ...+   .+ +.+.+.|+.
T Consensus        93 l~~Ga--~kVv----i~s~~~~~~~~~~~~~~~~g~~~--vv~~d~~~~~~~~~g~~~~~~~~~~---~~-~~~~~~g~~  160 (239)
T d1vzwa1          93 LATGC--TRVN----LGTAALETPEWVAKVIAEHGDKI--AVGLDVRGTTLRGRGWTRDGGDLYE---TL-DRLNKEGCA  160 (239)
T ss_dssp             HHTTC--SEEE----ECHHHHHCHHHHHHHHHHHGGGE--EEEEEEETTEECCSSSCCCCCBHHH---HH-HHHHHTTCC
T ss_pred             hcccc--ccch----hhHHhhhccccchhhhccCCcee--eeeeccceeeecCccceeeccccch---hh-hhhhhcccc
Confidence            34565  5676    48899999999999999987653  3444444      2454432 2222   23 345678999


Q ss_pred             EEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH---cCCCEEEecHHhhhCC
Q 023442           75 HFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR---KGAHHVMVGRAAYQNP  149 (282)
Q Consensus        75 ~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~---~g~DgVmIGRgal~nP  149 (282)
                      .|.++  .|.++.+|.           +++.+..+.+ ..++|++++|||.|.+|++++.+   .|++||.+|++++.+-
T Consensus       161 eii~tdi~~dGt~~G~-----------d~~l~~~i~~-~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~  228 (239)
T d1vzwa1         161 RYVVTDIAKDGTLQGP-----------NLELLKNVCA-ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKA  228 (239)
T ss_dssp             CEEEEEC-------CC-----------CHHHHHHHHH-TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTS
T ss_pred             EEEEEeecccceecCC-----------cchhhhhhhh-ccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCC
Confidence            99998  566666664           2777777765 46899999999999999998854   6999999999987665


Q ss_pred             c
Q 023442          150 W  150 (282)
Q Consensus       150 ~  150 (282)
                      .
T Consensus       229 i  229 (239)
T d1vzwa1         229 F  229 (239)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=98.57  E-value=6.1e-08  Score=87.25  Aligned_cols=73  Identities=7%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             HHHHhCCCCEEEEec--CCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442           66 KVSSLSPTRHFIIHS--RKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~--Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +.+++.|+..|.++.  |.++..|.           +++.+.++.+. .++|||++||+.+++|+.+++. ++++||++|
T Consensus       227 ~~~~~~G~GEIlltdIdrDGt~~G~-----------D~el~~~i~~~-~~iPiIasGGi~s~~di~~ll~~~~v~gv~~g  294 (323)
T d1jvna1         227 RACEALGAGEILLNCIDKDGSNSGY-----------DLELIEHVKDA-VKIPVIASSGAGVPEHFEEAFLKTRADACLGA  294 (323)
T ss_dssp             HHHHHTTCCEEEECCGGGTTTCSCC-----------CHHHHHHHHHH-CSSCEEECSCCCSHHHHHHHHHHSCCSEEEES
T ss_pred             hhhhccCcceeEEEeeccccccccc-----------chhHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHhCCCeEEEEh
Confidence            456899999999995  55555664           37888777665 5899999999999999999988 899999999


Q ss_pred             HHhhhCCc
Q 023442          143 RAAYQNPW  150 (282)
Q Consensus       143 Rgal~nP~  150 (282)
                      +.+..+-.
T Consensus       295 s~~~~~~~  302 (323)
T d1jvna1         295 GMFHRGEF  302 (323)
T ss_dssp             HHHHTTSC
T ss_pred             hHHHcCCC
Confidence            99865443

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=7.4e-07  Score=79.50  Aligned_cols=111  Identities=18%  Similarity=0.058  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEec---CCc-------ccCCCCcCCcCC
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHS---RKA-------LLNGISPAENRT   95 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~---Rt~-------~~~G~~~ad~~~   95 (282)
                      ..+.+.++.+++.++.|+.+|.=.+..   +.++ +    +.+.++|+|.|.|.+   |+.       ...+........
T Consensus       144 ~~~~~~i~~i~~~~~~~vivk~v~~~~---~~~~-a----~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~  215 (329)
T d1p0ka_         144 SGALKRIEQICSRVSVPVIVKEVGFGM---SKAS-A----GKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWG  215 (329)
T ss_dssp             TTHHHHHHHHHHHCSSCEEEEEESSCC---CHHH-H----HHHHHHTCSEEEEEC---------------CCGGGGTTCS
T ss_pred             cchHHHHHHHHHHcCCCcEEEecCCcc---hHHH-H----HHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhH
Confidence            344566778888889999998633222   2222 1    234578999999853   221       000110001111


Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +++  ...+.+......++|||+.|||.+..|+.+++..|||+||+||.++
T Consensus       216 ~~~--~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l  264 (329)
T d1p0ka_         216 IST--AASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL  264 (329)
T ss_dssp             CCH--HHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHH--HHHHHHHHhhcCCceEEEcCCcccHHHHHHHHHcCCCchhccHHHH
Confidence            222  3333444444468999999999999999999999999999999754

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=5.3e-07  Score=81.62  Aligned_cols=98  Identities=15%  Similarity=0.246  Sum_probs=69.4

Q ss_pred             HHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYA  106 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~  106 (282)
                      .+-++.+++.++.|+.+|--.+.      ++     +..+.++|++.+.|.  +.++...+.          ...+.+.+
T Consensus       206 ~~~i~~l~~~~~~pii~Kgi~~~------~d-----a~~a~~~G~d~i~vsnhggr~~d~~~----------~~~~~l~~  264 (349)
T d1tb3a1         206 WNDLSLLQSITRLPIILKGILTK------ED-----AELAMKHNVQGIVVSNHGGRQLDEVS----------ASIDALRE  264 (349)
T ss_dssp             HHHHHHHHTTCCSCEEEEEECSH------HH-----HHHHHHTTCSEEEECCGGGTSSCSBC----------CHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccchhhhh------HH-----HHHHHHhhccceeeeccccccccccc----------cchhhcce
Confidence            35677888888999999954321      22     123468999999995  433321111          11344444


Q ss_pred             HHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          107 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       107 l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +++.. .++|||+.|||++..|+.+++..|||+|+|||.+|.
T Consensus       265 i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~  306 (349)
T d1tb3a1         265 VVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (349)
T ss_dssp             HHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             eeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence            44432 479999999999999999999999999999998864

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.4e-06  Score=76.54  Aligned_cols=99  Identities=19%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             cCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecC--Ccc-----cCCCCcC-----CcCCCCCccHHHHH
Q 023442           38 NTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSR--KAL-----LNGISPA-----ENRTIPPLKYEYYY  105 (282)
Q Consensus        38 ~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~R--t~~-----~~G~~~a-----d~~~i~~~~~~~i~  105 (282)
                      .++.|+.+|.=.+..   +. +.    ++.+.++|++.|.|.++  +..     ..+..+.     ....++.  .+.+.
T Consensus       157 ~~~~p~~~k~v~~~~---~~-e~----a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~al~  226 (310)
T d1vcfa1         157 PLPFPVMVKEVGHGL---SR-EA----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPT--ARAIL  226 (310)
T ss_dssp             SCSSCEEEECSSSCC---CH-HH----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBH--HHHHH
T ss_pred             hccCCceeeeecCcc---cH-HH----HHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHH--HHHHH
Confidence            457899999643322   22 22    23467899999998543  110     0011000     0001121  23344


Q ss_pred             HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      ++.+...++|||+.|||.+..|+.+++..|||+|||||+++
T Consensus       227 ~~~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l  267 (310)
T d1vcfa1         227 EVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLL  267 (310)
T ss_dssp             HHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             HHHhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence            44444468999999999999999999999999999999765

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=9.5e-07  Score=75.88  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             cccCCchhhcccCcccccccCCHHHHHHHHHHHhhcCCccEEEEec------CCCCCCC--cHHHHHHHHHHHHHhCCCC
Q 023442            3 SCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCR------IGVDDHD--SYNQLCDFIYKVSSLSPTR   74 (282)
Q Consensus         3 N~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR------~G~d~~~--~~~e~~~~v~~~le~~Gv~   74 (282)
                      +.|+  .+|+    .|+.+.++|.++..+.+ +..  .+.+++.+|      -||....  +..++    .+.+++.|+.
T Consensus        93 ~~Ga--~kVv----i~s~~~~~~~~~~~~~~-~~~--~~~v~iD~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~g~~  159 (241)
T d1qo2a_          93 KLGY--RRQI----VSSKVLEDPSFLKSLRE-IDV--EPVFSLDTRGGRVAFKGWLAEEEIDPVSL----LKRLKEYGLE  159 (241)
T ss_dssp             HTTC--CEEE----ECHHHHHCTTHHHHHHT-TTC--EEEEEEEEETTEECCTTCSSCSCCCHHHH----HHHHHTTTCC
T ss_pred             cccc--ceEe----cCcccccCchhhhhhcc-ccc--ceeeecccccccccccCcccceeeehhHH----HHHhhccccc
Confidence            4454  5566    47788888887666433 222  233454444      2455432  23333    3356789999


Q ss_pred             EEEEe--cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH------cCCCEEEecHHhh
Q 023442           75 HFIIH--SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR------KGAHHVMVGRAAY  146 (282)
Q Consensus        75 ~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~------~g~DgVmIGRgal  146 (282)
                      .+.++  .|.++.+|.           +++.+.++.+. +++|||++|||.|.+|++++.+      .+++||.+|++++
T Consensus       160 eii~~dId~dGt~~G~-----------d~~l~~~i~~~-~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~  227 (241)
T d1qo2a_         160 EIVHTEIEKDGTLQEH-----------DFSLTKKIAIE-AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFL  227 (241)
T ss_dssp             EEEEEETTHHHHTCCC-----------CHHHHHHHHHH-HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHH
T ss_pred             eEEEeehhhhhhcccc-----------chhhhhhhhcc-CCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHH
Confidence            99998  455555664           37777777654 6899999999999999999975      3699999999986


Q ss_pred             hCC
Q 023442          147 QNP  149 (282)
Q Consensus       147 ~nP  149 (282)
                      .+-
T Consensus       228 ~g~  230 (241)
T d1qo2a_         228 EGI  230 (241)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            554

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.05  E-value=7.9e-06  Score=73.69  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             HHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYYYA  106 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i~~  106 (282)
                      .+-++.+++.++.|+.+|-=.++      .+.     ..+.+.|++.+.+.  +..+...+.+        +  .+.+..
T Consensus       213 ~~~v~~l~~~~~~~~~~kg~~~~------~da-----~~a~~~g~~~~~vsnhggr~ld~~~~--------~--~~~l~~  271 (359)
T d1goxa_         213 WKDVAWLQTITSLPILVKGVITA------EDA-----RLAVQHGAAGIIVSNHGARQLDYVPA--------T--IMALEE  271 (359)
T ss_dssp             HHHHHHHHHHCCSCEEEECCCSH------HHH-----HHHHHTTCSEEEECCGGGTSSTTCCC--------H--HHHHHH
T ss_pred             HHHHHHHHhhcccceeeecccch------HHH-----HHHHHccccceecccccccccccccc--------h--hhhchh
Confidence            34467777777889998853222      221     23468999999984  4433222221        1  344444


Q ss_pred             HHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          107 LLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       107 l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +++.. .++|||+.|||+|.-|+.+++..|||+|++||.+|.-+.
T Consensus       272 i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la  316 (359)
T d1goxa_         272 VVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLA  316 (359)
T ss_dssp             HHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred             hhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence            44432 479999999999999999999999999999999876444

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=97.98  E-value=2.7e-05  Score=76.37  Aligned_cols=114  Identities=16%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             cCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC---CcCCCC
Q 023442           22 MLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA---ENRTIP   97 (282)
Q Consensus        22 l~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a---d~~~i~   97 (282)
                      ...++-+.+.|..+|+.. +.||+||+=.+.    .+.+++.    .+.++|+|.|+|.|..+. .|-+|.   ++-.+|
T Consensus       552 i~siedL~~~I~~Lr~~~~~~pv~vKl~~~~----~~~~i~~----~v~ka~~D~I~IdG~eGG-TGAap~~~~d~~GlP  622 (771)
T d1ea0a2         552 IYSIEDLAQLIYDLKQINPDAKVTVKLVSRS----GIGTIAA----GVAKANADIILISGNSGG-TGASPQTSIKFAGLP  622 (771)
T ss_dssp             CSSHHHHHHHHHHHHHHCTTCEEEEEEECCT----THHHHHH----HHHHTTCSEEEEECTTCC-CSSEETTHHHHSCCC
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCEEEEECCcC----cHHHHHH----HHHhcCCCEEEEecCCCc-cccccHHHhhcCCcC
Confidence            345788899999999876 899999985432    2333332    345789999999986531 111111   111222


Q ss_pred             CccHHH-HH----HHHhcC--CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           98 PLKYEY-YY----ALLRDF--PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        98 ~~~~~~-i~----~l~~~~--~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                         |++ +.    .+.+..  -+|.+++.|++.|+.|+.+++..|||+|.+||++|-
T Consensus       623 ---~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~  676 (771)
T d1ea0a2         623 ---WEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLI  676 (771)
T ss_dssp             ---HHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHH
T ss_pred             ---HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHH
Confidence               443 22    222221  259999999999999999999999999999999973

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.95  E-value=0.00011  Score=62.35  Aligned_cols=121  Identities=22%  Similarity=0.261  Sum_probs=77.9

Q ss_pred             cccCcccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe------------
Q 023442           12 AGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH------------   79 (282)
Q Consensus        12 ~~~g~yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH------------   79 (282)
                      .++.+ |-+-|.+|+.+.+|++++    ++||..|.|+|..     .+     +++|+..|++++.=+            
T Consensus        35 iR~~G-GvaRm~dp~~i~ei~~~v----sipvmak~righ~-----~e-----aqiLe~~~vd~ideseVLTpad~~~hi   99 (254)
T d1znna1          35 IRAAG-GVARMADPTVIEEVMNAV----SIPVMAKVRIGHY-----VE-----ARVLEALGVDYIDESEVLTPADEEFHI   99 (254)
T ss_dssp             ----C-CCCCCCCHHHHHHHHHHC----SSCEEEEEETTCH-----HH-----HHHHHHHTCSEEEEETTSCCSCSSCCC
T ss_pred             HHhcC-CcccCCCHHHHHHHHHhc----ccccccccCCCch-----HH-----HHhHHhhCCCcccHhHhcccccHHHhh
Confidence            34555 788899999988887775    8999999999841     12     357788888887631            


Q ss_pred             ------------cCC------c--------ccCCCCcCCcC--------C----------CC-----------CccHHHH
Q 023442           80 ------------SRK------A--------LLNGISPAENR--------T----------IP-----------PLKYEYY  104 (282)
Q Consensus        80 ------------~Rt------~--------~~~G~~~ad~~--------~----------i~-----------~~~~~~i  104 (282)
                                  .|+      +        ..+|...-.+-        .          .+           ...++.+
T Consensus       100 ~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~  179 (254)
T d1znna1         100 DKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVL  179 (254)
T ss_dssp             CGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHH
T ss_pred             cccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHH
Confidence                        121      0        01222110000        0          00           0013344


Q ss_pred             HHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          105 YALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       105 ~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++++. ...+|++..|||-|+.|+..+++.|||||++|.|+..
T Consensus       180 ~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~  223 (254)
T d1znna1         180 REIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK  223 (254)
T ss_dssp             HHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred             HHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence            444442 2578999999999999999999999999999998744

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.90  E-value=1.4e-05  Score=71.57  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHHH
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +..+-++.+++.++.|+.+|-=.++      .+     +..+.+.|++.+.+.  +......+.+          .++.+
T Consensus       209 ~~~~~i~~l~~~~~~~i~~kgv~~~------~~-----~~~a~~~g~~~~~~s~~gg~~~~~~~~----------~~~~l  267 (353)
T d1p4ca_         209 FNWEALRWLRDLWPHKLLVKGLLSA------ED-----ADRCIAEGADGVILSNHGGRQLDCAIS----------PMEVL  267 (353)
T ss_dssp             CCHHHHHHHHHHCCSEEEEEEECCH------HH-----HHHHHHTTCSEEEECCGGGTSCTTCCC----------GGGTH
T ss_pred             CCHHHHHHHHhccccchhhhcchhh------hh-----HHHHHhcCCchhhhccccccccccccc----------chhcc
Confidence            4455677777878899998854332      12     123457899998874  3222111111          12333


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .++... .++|||+.|||+|.-|+.+++..|||+|++||.+|.
T Consensus       268 ~~i~~~-~~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~  309 (353)
T d1p4ca_         268 AQSVAK-TGKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY  309 (353)
T ss_dssp             HHHHHH-HCSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             cchhcc-cccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHH
Confidence            333332 478999999999999999999999999999998774

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=1.9e-05  Score=72.79  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe--cCCcccCCCCcCCcCCCCCccHHH-
Q 023442           27 FVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH--SRKALLNGISPAENRTIPPLKYEY-  103 (282)
Q Consensus        27 ~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH--~Rt~~~~G~~~ad~~~i~~~~~~~-  103 (282)
                      +..+.++.++..++.|+.+|--..      .++     +..+.+.|++.+.+.  ++.+. .+.        ++..|.. 
T Consensus       233 l~~~~i~~i~~~~~~~~i~kgi~~------~~d-----a~~~~~~G~~~i~vsnhggr~~-d~~--------~~~~~~l~  292 (414)
T d1kbia1         233 LTWKDIEELKKKTKLPIVIKGVQR------TED-----VIKAAEIGVSGVVLSNHGGRQL-DFS--------RAPIEVLA  292 (414)
T ss_dssp             CCHHHHHHHHHHCSSCEEEEEECS------HHH-----HHHHHHTTCSEEEECCTTTTSS-TTC--------CCHHHHHH
T ss_pred             CCHHHHHHHhccCCceEEeeccch------hHH-----HHHHHhcCCcceeecccccccc-ccc--------cccccchh
Confidence            344667788888899999995321      222     123458999999985  33322 111        1111221 


Q ss_pred             -HHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442          104 -YYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus       104 -i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                       +..++..   ..++|||+.|||++.-|+.+++..|||+|+|||.+|.-
T Consensus       293 ~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~  341 (414)
T d1kbia1         293 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA  341 (414)
T ss_dssp             HHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             hhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence             2333221   24699999999999999999999999999999987643

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=97.72  E-value=0.00015  Score=71.20  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=76.1

Q ss_pred             CHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC-----CcCCCC
Q 023442           24 DPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA-----ENRTIP   97 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a-----d~~~i~   97 (282)
                      .++-+.+.|..+|+.. +.||+||+=.+.    ....++    .-+.++|+|.|+|.|..+   |++.+     ++--+|
T Consensus       581 siedL~q~I~~Lr~~~~~~pv~vKl~~~~----g~~~ia----~~vaka~aD~I~IdG~eG---GTGAap~~~~~~~GlP  649 (809)
T d1ofda2         581 SIEDLAQLIYDLHQINPEAQVSVKLVAEI----GIGTIA----AGVAKANADIIQISGHDG---GTGASPLSSIKHAGSP  649 (809)
T ss_dssp             SHHHHHHHHHHHHHHCTTSEEEEEEECST----THHHHH----HHHHHTTCSEEEEECTTC---CCSSEEHHHHHHBCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCceEEEEeeec----ChHHHH----HHHhhcCCCEEEEeCCCC---ccccccHHHHhcCCcc
Confidence            5788889999999866 789999986322    122222    233468999999998652   22211     111122


Q ss_pred             CccHHH-HH----HHHhcCC--CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           98 PLKYEY-YY----ALLRDFP--DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        98 ~~~~~~-i~----~l~~~~~--~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                         |++ +.    .+.+...  .|.+++.|++.|+.|+.+++..|||+|.+||++|--
T Consensus       650 ---~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~a  704 (809)
T d1ofda2         650 ---WELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIA  704 (809)
T ss_dssp             ---HHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHH
Confidence               543 22    2222222  589999999999999999999999999999999643

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=0.00011  Score=65.65  Aligned_cols=74  Identities=20%  Similarity=0.255  Sum_probs=51.1

Q ss_pred             HHHhCCCCEEEEecC------CcccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           67 VSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        67 ~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~~~~~~i~---~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                      .|.++|+|.|.|=..      |+...|..-      |.  +..+.   +.++ ..++|||+.|||.+..|+.+++..|||
T Consensus       155 ~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~------p~--~sai~~~~~~~~-~~~vpvIAdGGi~~~gdiakAla~GAd  225 (330)
T d1vrda1         155 ALIKAGADAVKVGVGPGSICTTRVVAGVGV------PQ--LTAVMECSEVAR-KYDVPIIADGGIRYSGDIVKALAAGAE  225 (330)
T ss_dssp             HHHHTTCSEEEECSSCSTTCHHHHHHCCCC------CH--HHHHHHHHHHHH-TTTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             HHHHcCCCEEeeccccCccccccceecccc------cc--chhHHHHHHHHH-hcCceEEecCCcccCCchheeeeccCc
Confidence            356799999988211      122223211      11  33332   3333 358999999999999999999999999


Q ss_pred             EEEecHHhhhCC
Q 023442          138 HVMVGRAAYQNP  149 (282)
Q Consensus       138 gVmIGRgal~nP  149 (282)
                      +||+|.-+.+-.
T Consensus       226 ~Vm~Gs~fa~~~  237 (330)
T d1vrda1         226 SVMVGSIFAGTE  237 (330)
T ss_dssp             EEEESHHHHTBT
T ss_pred             eeeecchheeec
Confidence            999998886644

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=97.47  E-value=0.00011  Score=67.07  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             HHHhCCCCEEEEec------CCcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442           67 VSSLSPTRHFIIHS------RKALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHH  138 (282)
Q Consensus        67 ~le~~Gv~~i~VH~------Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~Dg  138 (282)
                      .|.++|+|.|-|=.      .|+...|..-      |.  +..+.++.+.  ...+|||+-|||.+.-|+.++|..|||+
T Consensus       208 ~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~------pq--~sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~  279 (388)
T d1eepa_         208 DLISVGADCLKVGIGPGSICTTRIVAGVGV------PQ--ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADS  279 (388)
T ss_dssp             HHHTTTCSEEEECSSCSTTSHHHHHHCCCC------CH--HHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSE
T ss_pred             HHHhcCCCeeeeccccccccccccccccCc------ch--HHHHHHHHHHhccCCceEEeccccCcCCceeeeEEeccce
Confidence            35689999998842      1233345421      21  4555444322  2479999999999999999999999999


Q ss_pred             EEecHHhhh
Q 023442          139 VMVGRAAYQ  147 (282)
Q Consensus       139 VmIGRgal~  147 (282)
                      ||+|..+-+
T Consensus       280 VMlG~~lAg  288 (388)
T d1eepa_         280 VMIGNLFAG  288 (388)
T ss_dssp             EEECHHHHT
T ss_pred             eecchhhhc
Confidence            999987754

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00016  Score=61.85  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+++.|++.|++-.=.+...+.         +.+++.+.++.++ ..+|+...|||+|.+++++++..|||-|.+|..
T Consensus        36 a~~~~~~g~dei~ivDld~~~~~~---------~~~~~~i~~i~~~-~~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~  105 (253)
T d1thfd_          36 GKFYSEIGIDELVFLDITASVEKR---------KTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINTA  105 (253)
T ss_dssp             HHHHHHTTCCEEEEEESSCSSSHH---------HHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             HHHHHHcCCCEEEEEeecccccCc---------ccHHHHHHHHHhc-cCccceeecccccchhhhhHHhcCCCEEEEChH
Confidence            456788999999885322111111         1235667777765 689999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.||.++ .++
T Consensus       106 ~~~n~~~l-~~~  116 (253)
T d1thfd_         106 AVENPSLI-TQI  116 (253)
T ss_dssp             HHHCTHHH-HHH
T ss_pred             HhhChHHH-HHH
Confidence            99999974 544

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.39  E-value=0.00022  Score=61.15  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|++.|++-.-.....+.         +..++.+.++.+. ..+|+...|||+|.+++++++..|||-|.+|.
T Consensus        37 ~a~~~~~~gadei~ivDl~~~~~~~---------~~~~~~i~~i~~~-~~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s  106 (252)
T d1h5ya_          37 MAVRYEEEGADEIAILDITAAPEGR---------ATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNT  106 (252)
T ss_dssp             HHHHHHHTTCSCEEEEECCCCTTTH---------HHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             HHHHHHHCCCCEEEEEecccccccc---------ccHHHHHHHHHhh-cCCcceeecccchhhhhhhHhhcCCcEEEecc
Confidence            3556789999999887533222221         1236677777765 58999999999999999999999999999999


Q ss_pred             HhhhCCccchhhh
Q 023442          144 AAYQNPWYTLGHV  156 (282)
Q Consensus       144 gal~nP~if~~~~  156 (282)
                      .++.||.++ .++
T Consensus       107 ~~~~~~~~~-~~~  118 (252)
T d1h5ya_         107 AAVRNPQLV-ALL  118 (252)
T ss_dssp             HHHHCTHHH-HHH
T ss_pred             cccCCcchH-HHH
Confidence            999999974 544

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00024  Score=60.70  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+.+.|++.|++-.=.....+.         +..++.+.++.+. ..+|+...|||+|.+++++++..||+-|.+|..
T Consensus        36 a~~~~~~g~dei~iiDl~~~~~~~---------~~~~~~i~~i~~~-~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~  105 (251)
T d1ka9f_          36 ARAYDEAGADELVFLDISATHEER---------AILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA  105 (251)
T ss_dssp             HHHHHHHTCSCEEEEECCSSTTCH---------HHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             HHHHHHcCCCEEEEEecccccccc---------hhHHHHHHHHHhc-cCcchheeccccCHHHHHHHHHcCCCEEEECch
Confidence            456788999999886432211111         1135667777775 589999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.||.++ .++
T Consensus       106 ~~~n~~~i-~~~  116 (251)
T d1ka9f_         106 AVRRPELI-REL  116 (251)
T ss_dssp             HHHCTHHH-HHH
T ss_pred             hhhCHHHH-HHH
Confidence            99999975 444

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=97.29  E-value=0.0003  Score=58.27  Aligned_cols=76  Identities=13%  Similarity=0.064  Sum_probs=57.6

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|+|++.+.+=.....    .  ...+|+.|+.+.++++. .++||++=||| |.+++.+++++|+|||.+.++++.
T Consensus       115 a~~~g~DYi~~gpvf~T~t----k--~~~~~~g~~~l~~~~~~-~~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~  186 (206)
T d1xi3a_         115 AEKKGADYLGAGSVFPTKT----K--EDARVIGLEGLRKIVES-VKIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMG  186 (206)
T ss_dssp             HHHHTCSEEEEECSSCC----------CCCCCHHHHHHHHHHH-CSSCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHT
T ss_pred             HHhcCCCEEEecccccccc----c--cccccccHHHHHHHHHh-cCCCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHC
Confidence            3567999999986321100    0  01245678988888875 58999999999 888999999999999999999988


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .+..
T Consensus       187 ~~dp  190 (206)
T d1xi3a_         187 AEDV  190 (206)
T ss_dssp             SSSH
T ss_pred             CCCH
Confidence            7663

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.22  E-value=0.00013  Score=66.35  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             HHHhCCCCEEEEecC------CcccCCCCcCCcCCCCCccHHHHH---HHHhcCCCceEEEccCCCCHHHHHHHHHcCCC
Q 023442           67 VSSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYY---ALLRDFPDLTFTLNGGINTVDEVNAALRKGAH  137 (282)
Q Consensus        67 ~le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~~~~~~i~---~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~D  137 (282)
                      .|.++|+|.|.|=..      |+...|...      |.  +..+.   +.++. .++|||+-|||.+.-|+.+++..|||
T Consensus       176 ~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~------pq--~sai~~~~~~a~~-~~vpIIADGGi~~~gdiakAla~GAd  246 (378)
T d1jr1a1         176 NLIDAGVDALRVGMGCGSICITQEVLACGR------PQ--ATAVYKVSEYARR-FGVPVIADGGIQNVGHIAKALALGAS  246 (378)
T ss_dssp             HHHHHTCSEEEECSSCSTTBCHHHHHCCCC------CH--HHHHHHHHHHHGG-GTCCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             HHHHhCCCEEeeccccccccccccccccCc------cc--chhhhHHHHhhcc-cCCceecccccccCCceeeEEEeecc
Confidence            356789999988432      222233321      11  33333   33333 47999999999999999999999999


Q ss_pred             EEEecHHhhhC
Q 023442          138 HVMVGRAAYQN  148 (282)
Q Consensus       138 gVmIGRgal~n  148 (282)
                      +||+|.-+.+-
T Consensus       247 ~VMmGs~fAgt  257 (378)
T d1jr1a1         247 TVMMGSLLAAT  257 (378)
T ss_dssp             EEEESTTTTTB
T ss_pred             eeeecceeeee
Confidence            99999877543

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=0.00065  Score=57.10  Aligned_cols=78  Identities=17%  Similarity=0.035  Sum_probs=53.0

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.|+|++.+.+=......   .+  ..++..++.+..+.+...++||++=||| |.+++.+++++|+|||.+.++++.
T Consensus       131 a~~~g~DYi~~gpvf~T~sK---~~--~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~  204 (226)
T d2tpsa_         131 AEEDGADYVGLGPIYPTETK---KD--TRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQ  204 (226)
T ss_dssp             HHHHTCSEEEECCSSCCCSS---SS--CCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHT
T ss_pred             HHhCcCCeEEEecccccccc---cc--cccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhc
Confidence            34567888877642110000   01  1122234555555555568999999999 889999999999999999999998


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .+..
T Consensus       205 a~dp  208 (226)
T d2tpsa_         205 AEDP  208 (226)
T ss_dssp             SSCH
T ss_pred             CCCH
Confidence            7764

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.05  E-value=0.00024  Score=64.11  Aligned_cols=71  Identities=18%  Similarity=0.095  Sum_probs=49.3

Q ss_pred             HHhCCCCEEEEec------CCcccCCCCcCCcCCCCCccHHHHHHHHh---c-----CCCceEEEccCCCCHHHHHHHHH
Q 023442           68 SSLSPTRHFIIHS------RKALLNGISPAENRTIPPLKYEYYYALLR---D-----FPDLTFTLNGGINTVDEVNAALR  133 (282)
Q Consensus        68 le~~Gv~~i~VH~------Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~---~-----~~~ipVi~nGdI~s~eda~~~l~  133 (282)
                      |.++|+|.|-|=-      -|+...|..      +|.  +..+.+++.   +     ...+|||+-|||.++-|+.+++.
T Consensus       169 L~~aGaD~vkVGIG~Gs~CTTr~~tGvG------~Pq--~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla  240 (362)
T d1pvna1         169 LADAGADFIKIGIGGGSICITREQKGIG------RGQ--ATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA  240 (362)
T ss_dssp             HHHHTCSEEEECSSCSTTBCHHHHTCBC------CCH--HHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred             HHHhCCcEEEecccccccccchhhhccC------Cch--HHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEE
Confidence            4578999998841      233344542      122  444444321   1     13689999999999999999999


Q ss_pred             cCCCEEEecHHhh
Q 023442          134 KGAHHVMVGRAAY  146 (282)
Q Consensus       134 ~g~DgVmIGRgal  146 (282)
                      .|||+||+|.-+-
T Consensus       241 ~GAd~VM~G~~lA  253 (362)
T d1pvna1         241 MGADFIMLGRYFA  253 (362)
T ss_dssp             TTCSEEEESHHHH
T ss_pred             Eeccceeehhhhh
Confidence            9999999996553

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.05  E-value=0.0018  Score=55.23  Aligned_cols=53  Identities=19%  Similarity=0.347  Sum_probs=44.5

Q ss_pred             ccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           99 LKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        99 ~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      ++.+...++....| ++.+|+-+||.|++|++++.+.|+|||.||.++|.+|..
T Consensus       188 vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~  241 (247)
T d1a53a_         188 INKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK  241 (247)
T ss_dssp             BCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred             hhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence            34555566666554 688999999999999999988999999999999999974

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=96.99  E-value=0.0026  Score=53.71  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh--hCCcc
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY--QNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal--~nP~i  151 (282)
                      -..++.++++ .++|||.-+||-++.|+..+++.|||+|++..+.-  .||-.
T Consensus       166 ~~~l~~i~~~-~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~  217 (251)
T d1xm3a_         166 PLNLSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVK  217 (251)
T ss_dssp             HHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHH
T ss_pred             hHHHHHHHhc-CCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHH
Confidence            4455555555 69999999999999999999999999999998873  34443

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.98  E-value=0.0013  Score=56.28  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      +.+.++++ ..++||+..-||.|++|+.++++.+||||.||.+++
T Consensus       181 ~~v~~vk~-~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv  224 (248)
T d1geqa_         181 DLLRRAKR-ICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV  224 (248)
T ss_dssp             HHHHHHHH-HCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             HHHHHHhh-hcccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence            45566655 478999999999999999999998999999999875

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=96.97  E-value=0.00023  Score=63.28  Aligned_cols=81  Identities=14%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHH-----------HHHHH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDE-----------VNAAL  132 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~ed-----------a~~~l  132 (282)
                      +++.+++.|+|.|++--=++...|.. .+     ...++.+.+++++ ..+||...|||+|.+|           |++++
T Consensus        53 ~a~~~~~~gaDeL~ivDidas~~~~~-~~-----~~~~~~I~~i~~~-~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll  125 (323)
T d1jvna1          53 LAQKYYQQGADEVTFLNITSFRDCPL-KD-----TPMLEVLKQAAKT-VFVPLTVGGGIKDIVDVDGTKIPALEVASLYF  125 (323)
T ss_dssp             HHHHHHHTTCSEEEEEEEC---CCCG-GG-----CHHHHHHHHHTTT-CCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEECcCCCCCcC-CC-----chHHHHHHhhccc-cceeEEEecCcccHHHhhhccchhhHHHHHHH
Confidence            46678899999999742111111110 00     1126667777665 5899999999999765           67888


Q ss_pred             HcCCCEEEecHHhhhCCcc
Q 023442          133 RKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       133 ~~g~DgVmIGRgal~nP~i  151 (282)
                      +.|||=|.||.+|+.||.+
T Consensus       126 ~~GadKVvI~T~ai~~p~~  144 (323)
T d1jvna1         126 RSGADKVSIGTDAVYAAEK  144 (323)
T ss_dssp             HHTCSEEEECHHHHHHHHH
T ss_pred             HcCCCeEEechHHhhChHH
Confidence            8999999999999987774

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.90  E-value=0.0011  Score=55.93  Aligned_cols=80  Identities=24%  Similarity=0.297  Sum_probs=61.6

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++.+.+.|++.|++--=++.. +.         +.+++.+.++.++. .+||...|||+|.++++++++.|+|-|.+|..
T Consensus        37 a~~~~~~ga~~l~i~DLd~~~-~~---------~~~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~  105 (239)
T d1vzwa1          37 ALAWQRSGAEWLHLVDLDAAF-GT---------GDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTA  105 (239)
T ss_dssp             HHHHHHTTCSEEEEEEHHHHH-TS---------CCCHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHH
T ss_pred             HHHHHHcCCCEEEEEeecccc-cc---------cchHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHH
Confidence            456678999998875211111 11         11367777777764 79999999999999999999999999999999


Q ss_pred             hhhCCccchhhh
Q 023442          145 AYQNPWYTLGHV  156 (282)
Q Consensus       145 al~nP~if~~~~  156 (282)
                      ++.||.++ .++
T Consensus       106 ~~~~~~~~-~~~  116 (239)
T d1vzwa1         106 ALETPEWV-AKV  116 (239)
T ss_dssp             HHHCHHHH-HHH
T ss_pred             hhhccccc-hhh
Confidence            99999975 443

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.87  E-value=0.00085  Score=60.49  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             HHhCCCCEEEEecC------CcccCCCCcCCcCCCCCccHHHHHHH---HhcCCCceEEEccCCCCHHHHHHHHHcCCCE
Q 023442           68 SSLSPTRHFIIHSR------KALLNGISPAENRTIPPLKYEYYYAL---LRDFPDLTFTLNGGINTVDEVNAALRKGAHH  138 (282)
Q Consensus        68 le~~Gv~~i~VH~R------t~~~~G~~~ad~~~i~~~~~~~i~~l---~~~~~~ipVi~nGdI~s~eda~~~l~~g~Dg  138 (282)
                      |.++|+|.|.|-..      |+...|..      +|.  +..+.++   +++ ..+|||+-|||.+.-|+.+++..|||+
T Consensus       165 L~~aGaD~VkVGiG~Gs~CTTr~~tGvG------vPq--~sai~~~~~~~~~-~~~~iIADGGi~~~GDi~KAla~GAd~  235 (365)
T d1zfja1         165 LYDAGVDVVKVGIGPGSICTTRVVAGVG------VPQ--VTAIYDAAAVARE-YGKTIIADGGIKYSGDIVKALAAGGNA  235 (365)
T ss_dssp             HHHTTCSEEEECSSCCTTBCHHHHTCCC------CCH--HHHHHHHHHHHHH-TTCEEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             HHhcCCceEEeeecccccccCcceeeee------ccc--hhHHHHHHHHHHh-CCceEEecCCcCcchhhhhhhhccCCE
Confidence            45799999988522      22334432      122  3444333   333 379999999999999999999999999


Q ss_pred             EEecHHhhhC
Q 023442          139 VMVGRAAYQN  148 (282)
Q Consensus       139 VmIGRgal~n  148 (282)
                      ||+|.-+-+-
T Consensus       236 VMlG~~lAg~  245 (365)
T d1zfja1         236 VMLGSMFAGT  245 (365)
T ss_dssp             EEESTTTTTB
T ss_pred             EEecchhccc
Confidence            9999766443

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=96.77  E-value=0.0061  Score=50.61  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=37.4

Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+++||++.|+|.+.+|+..+++.|+|||.||.+.+.-+..
T Consensus       173 ~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~  213 (224)
T d1hg3a_         173 NPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDP  213 (224)
T ss_dssp             CTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSH
T ss_pred             ccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCH
Confidence            46899999999999999999999999999999999987773

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.73  E-value=0.002  Score=54.67  Aligned_cols=43  Identities=16%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+..+++ .+++|||.-+||-+++|+..+++.|||||+++.|..
T Consensus       170 ~l~~i~~-~~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa  212 (243)
T d1wv2a_         170 NLRIILE-EAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIA  212 (243)
T ss_dssp             HHHHHHH-HCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             HHHhccc-cCCcceEeecccCCHHHHHHHHHccCCEEEechHhh
Confidence            3444444 479999999999999999999999999999999884

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.72  E-value=0.0011  Score=59.78  Aligned_cols=68  Identities=19%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             hCCCCEEEEe---cC---CcccCCCCcCCcCCCCCccHHHHHHHHhc--CCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           70 LSPTRHFIIH---SR---KALLNGISPAENRTIPPLKYEYYYALLRD--FPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        70 ~~Gv~~i~VH---~R---t~~~~G~~~ad~~~i~~~~~~~i~~l~~~--~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ..|+|.+-|=   |.   |+...|...      |  .+..+.++...  ..++|||+-|||.+.-|+.+++..|||+||+
T Consensus       173 l~gaD~VkVGIG~Gs~CTTr~~tGvG~------P--q~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMl  244 (368)
T d2cu0a1         173 LTFADAVKVGIGPGSICTTRIVAGVGV------P--QITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVML  244 (368)
T ss_dssp             CTTSSEEEECSSCSTTBCHHHHTCCCC------C--HHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             hhcCcceeecccCcccccchhhccccc------c--hHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeec
Confidence            4678887763   11   233344421      2  14555444321  1369999999999999999999999999999


Q ss_pred             cHHh
Q 023442          142 GRAA  145 (282)
Q Consensus       142 GRga  145 (282)
                      |.-+
T Consensus       245 G~~l  248 (368)
T d2cu0a1         245 GNLL  248 (368)
T ss_dssp             STTT
T ss_pred             cchh
Confidence            9765

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.60  E-value=0.0061  Score=52.36  Aligned_cols=46  Identities=24%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.+.++++ ..++||+...||.|++|+.+.++.+||||+||.+++.
T Consensus       194 ~~~i~~ik~-~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk  239 (267)
T d1qopa_         194 HHLIEKLKE-YHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK  239 (267)
T ss_dssp             HHHHHHHHH-TTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             HHHHHHHhh-hccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence            355666654 5799999999999999999999999999999988865

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.57  E-value=0.011  Score=49.56  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=70.5

Q ss_pred             ccccccCCHHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~   95 (282)
                      ||...-.+.+.+.+-++++++.+ +.++-|=+-.+.-+   -+++. .+.+++.++|+|+|-.+.... ..|.+      
T Consensus        93 ~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~---~~ei~-~a~~~a~~aGadfiKTSTG~~-~~gat------  161 (225)
T d1mzha_          93 LSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLN---EEEIK-KAVEICIEAGADFIKTSTGFA-PRGTT------  161 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCC---HHHHH-HHHHHHHHHTCSEEECCCSCS-SSCCC------
T ss_pred             hhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCC---HHHHH-HHHHHHHHcccceEeecCCCC-CCCCC------
Confidence            45555567888888888888876 44443333333222   23443 356678899999997664321 11211      


Q ss_pred             CCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           96 IPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                           .+.++.+.+.. .++.|=++|||+|.+|+.++++.|++-+.-..+
T Consensus       162 -----~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~  206 (225)
T d1mzha_         162 -----LEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             -----HHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             -----HHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhheecCcH
Confidence                 23332222221 368999999999999999999999996554444

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.50  E-value=0.017  Score=49.33  Aligned_cols=121  Identities=15%  Similarity=0.221  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEec--------------CCCCC----CCcHHHHHHHHHHHHHhCCCCEEEEecCC---
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCR--------------IGVDD----HDSYNQLCDFIYKVSSLSPTRHFIIHSRK---   82 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR--------------~G~d~----~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt---   82 (282)
                      +.+.+.++++.+++..++|+.+=.-              .|.+.    +...+|- ..+...+++.|.+.|.+-+-+   
T Consensus        77 ~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~-~~~~~~~~~~gl~~I~lvaPtt~~  155 (261)
T d1rd5a_          77 TMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAA-HSLWSEAKNNNLELVLLTTPAIPE  155 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTH-HHHHHHHHHTTCEECEEECTTSCH
T ss_pred             chhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHH-HHHHHHHhccccceEEEeccCCch
Confidence            4677888899998888888865321              12221    0011221 122345667788777654221   


Q ss_pred             -----------c-----ccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           83 -----------A-----LLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        83 -----------~-----~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                                 .     ...|..+... .+.+---+.+.++.+ ..++||+..-||.|++|++++.+.|||||.||.+++
T Consensus       156 ~Ri~~i~~~a~gFvY~vs~~GvTG~~~-~~~~~~~~~i~~ik~-~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv  233 (261)
T d1rd5a_         156 DRMKEITKASEGFVYLVSVNGVTGPRA-NVNPRVESLIQEVKK-VTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMV  233 (261)
T ss_dssp             HHHHHHHHHCCSCEEEECSSCCBCTTS-CBCTHHHHHHHHHHH-HCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             hHHHHHHhcCcchhhhhhccCcccccc-cchhHHHHHHHHhhh-ccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence                       0     1123322221 111111345555554 468999999999999999999998999999998875


Q ss_pred             h
Q 023442          147 Q  147 (282)
Q Consensus       147 ~  147 (282)
                      .
T Consensus       234 ~  234 (261)
T d1rd5a_         234 R  234 (261)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.002  Score=54.36  Aligned_cols=78  Identities=12%  Similarity=0.162  Sum_probs=55.9

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+.+.|++.++|--=+....|.         +.+...+ +..++. .+|+...|||.|.++++++++.|+|-|.++.
T Consensus        35 ~a~~~~~~g~~~l~ivDLda~~~~~---------~~~~~~~-~~~~~~-~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s  103 (241)
T d1qo2a_          35 LVEKLIEEGFTLIHVVDLSNAIENS---------GENLPVL-EKLSEF-AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSS  103 (241)
T ss_dssp             HHHHHHHTTCCCEEEEEHHHHHHCC---------CTTHHHH-HHGGGG-GGGEEEESSCCSHHHHHHHHHTTCCEEEECH
T ss_pred             HHHHHHHCCCCEEEEEecccccccC---------Ccchhhe-ehhccc-ccchhhhhhhhhhhhhhhccccccceEecCc
Confidence            4566788999999875211111121         1112333 333433 5799999999999999999999999999999


Q ss_pred             HhhhCCccc
Q 023442          144 AAYQNPWYT  152 (282)
Q Consensus       144 gal~nP~if  152 (282)
                      .++.||.+.
T Consensus       104 ~~~~~~~~~  112 (241)
T d1qo2a_         104 KVLEDPSFL  112 (241)
T ss_dssp             HHHHCTTHH
T ss_pred             ccccCchhh
Confidence            999999974

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.018  Score=47.71  Aligned_cols=114  Identities=11%  Similarity=0.095  Sum_probs=72.0

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      ||..+-.+.+.+.+-++++++.++- ..+|+=+-... -+-+++. .+.+++.++|+|+|-.+.... ..|.++.     
T Consensus        93 ~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~-L~~~ei~-~a~~~a~~aGadfiKTSTG~~-~~gat~e-----  163 (211)
T d1ub3a_          93 LGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGY-FSPEEIA-RLAEAAIRGGADFLKTSTGFG-PRGASLE-----  163 (211)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGG-SCHHHHH-HHHHHHHHHTCSEEECCCSSS-SCCCCHH-----
T ss_pred             cchhhcCCHHHHHHHHHHHHHhccC-CceEEEecccc-CCHHHHH-HHHHHHHHhccceEEecCCCC-CCCCCHH-----
Confidence            5666667899999999999988752 34565321111 1223443 356778899999997764321 0122111     


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                         .-..+.+.+.  .++.|=++|||+|.+++.++++.|++-+--.+|
T Consensus       164 ---~v~~m~~~~~--~~~~iKasGGIrt~~~a~~~l~aGa~riGtSs~  206 (211)
T d1ub3a_         164 ---DVALLVRVAQ--GRAQVKAAGGIRDRETALRMLKAGASRLGTSSG  206 (211)
T ss_dssp             ---HHHHHHHHHT--TSSEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             ---HHHHHHHHhC--CCceEECcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence               1222334433  357888999999999999999999996655444

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=96.32  E-value=0.0034  Score=52.47  Aligned_cols=44  Identities=34%  Similarity=0.495  Sum_probs=38.7

Q ss_pred             hcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442          109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       109 ~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      +..+++||++.|+|.+.+++..+++.|+|||.||.+.+.-+..|
T Consensus       169 ~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~  212 (226)
T d1w0ma_         169 RHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPY  212 (226)
T ss_dssp             HHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHH
T ss_pred             ccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCCHH
Confidence            33468999999999999999999999999999999999877643

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=96.02  E-value=0.0063  Score=50.88  Aligned_cols=48  Identities=21%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      +.+..+++...++||+..+||.|+|+++++.+ +||||.+|.++..++.
T Consensus       170 ~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~-~ADgVVVGSAiv~~ie  217 (229)
T d1viza_         170 EAVKKTKAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFD  217 (229)
T ss_dssp             HHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHCHH
T ss_pred             hhHHHHHhhccCcceEEEcccCCHHHHHHHHc-CCCEEEECHHHHhhHH
Confidence            44445555556799999999999999999874 8999999999876553

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.043  Score=46.41  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTI   96 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i   96 (282)
                      ||..+-.+.+.+.+-++++++.+. ...+|+=+-... -+-+++.. +.+++.++|+|+|-.+..... .|.++.     
T Consensus       126 ~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~-L~~~e~~~-a~~ia~~aGadfvKTSTGf~~-~gat~e-----  196 (251)
T d1o0ya_         126 VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCY-LDTEEKIA-ACVISKLAGAHFVKTSTGFGT-GGATAE-----  196 (251)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGG-CCHHHHHH-HHHHHHHTTCSEEECCCSSSS-CCCCHH-----
T ss_pred             cchhhcCCHHHHHHHHHHHHHHhc-ccceeeeecccc-cCcHHHHH-HHHHHHHhCcceeeccCCCCC-CCcCHH-----
Confidence            466666788999999999988874 334565321111 11234443 567788999999876643211 121110     


Q ss_pred             CCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442           97 PPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus        97 ~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                         ....+.+...  .++.|=++|||.|.+|+.++++.|||-+--
T Consensus       197 ---~V~~m~~~~~--~~~giKasGGIrt~~~a~~~i~aGa~riGt  236 (251)
T d1o0ya_         197 ---DVHLMKWIVG--DEMGVKASGGIRTFEDAVKMIMYGADRIGT  236 (251)
T ss_dssp             ---HHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             ---HHHHHHHHhC--CCceEeccCCcCCHHHHHHHHHHhhHHhCC
Confidence               1222333332  367888999999999999999999996543

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.88  E-value=0.0043  Score=51.91  Aligned_cols=45  Identities=22%  Similarity=0.407  Sum_probs=37.0

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +.+.+.++...++||+..+||.|+++++++.+ ++|||.+|.++..
T Consensus       176 ~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive  220 (231)
T d2f6ua1         176 ELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE  220 (231)
T ss_dssp             HHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             hHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence            44555556566799999999999999999887 7999999988644

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.73  E-value=0.053  Score=45.34  Aligned_cols=110  Identities=14%  Similarity=0.065  Sum_probs=62.1

Q ss_pred             cccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCC
Q 023442           18 GVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIP   97 (282)
Q Consensus        18 Gs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~   97 (282)
                      |+......+.+.++++..+. .+.++-|=+-.+.-+   -+++. .+.+++.++|+|+|--+..... .|-.        
T Consensus       112 ~~~~~~~~~ev~~~~~~~~~-~g~~lKVIlEt~~L~---~~~i~-~a~~~a~~aGadFVKTSTG~~~-~gat--------  177 (234)
T d1n7ka_         112 SLGPEAVYREVSGIVKLAKS-YGAVVKVILEAPLWD---DKTLS-LLVDSSRRAGADIVKTSTGVYT-KGGD--------  177 (234)
T ss_dssp             GGCHHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSC---HHHHH-HHHHHHHHTTCSEEESCCSSSC-CCCS--------
T ss_pred             hhhhhhhHHHHHHHHHHHhc-cCceEEEEEeccccc---hHHHH-HHHHHHHHhhhhheeecccccC-CCCC--------
Confidence            33333344556666665443 355554444333222   22333 3566778999999875532111 1111        


Q ss_pred             CccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           98 PLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        98 ~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.....+.+..+. .++.|=++|||+|.+|+.++++.|++-+--.
T Consensus       178 ~~~~~~l~~~~~~-~~vgIKasGGIrt~~~a~~~i~aGa~rIGtS  221 (234)
T d1n7ka_         178 PVTVFRLASLAKP-LGMGVKASGGIRSGIDAVLAVGAGADIIGTS  221 (234)
T ss_dssp             HHHHHHHHHHHGG-GTCEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHHhcC-CCCcEEeeCCcCCHHHHHHHHHccCceeecc
Confidence            1112223333332 3688999999999999999999999954433

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=95.49  E-value=0.033  Score=47.73  Aligned_cols=44  Identities=18%  Similarity=0.149  Sum_probs=35.1

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      -+.+.+++ +..++||+..=||.|++|+..+  .+||||.||.+++.
T Consensus       191 ~~~i~~ik-~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~  234 (271)
T d1ujpa_         191 KDLVRRIK-ARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR  234 (271)
T ss_dssp             HHHHHHHH-TTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred             HHHHHhhh-ccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHH
Confidence            34565654 4679999988899999999864  48999999988754

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=95.44  E-value=0.021  Score=48.36  Aligned_cols=118  Identities=20%  Similarity=0.220  Sum_probs=69.6

Q ss_pred             HHHHhhcCCccEEEEec------------CCCCCC------CcHHHHHHHHHHHHHhCCCCEE-EEecCCc-----ccCC
Q 023442           32 MSVIAANTNVPVSVKCR------------IGVDDH------DSYNQLCDFIYKVSSLSPTRHF-IIHSRKA-----LLNG   87 (282)
Q Consensus        32 v~~v~~~~~ipvsvKiR------------~G~d~~------~~~~e~~~~v~~~le~~Gv~~i-~VH~Rt~-----~~~G   87 (282)
                      ++.+++.+++||-.|==            .|-|--      -+-+++. .+.+.+.+.|.+.| .||....     ...|
T Consensus        93 l~~vr~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~-~l~~~a~~lgle~LvEvh~~~El~~al~~~~  171 (251)
T d1i4na_          93 VRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIK-EIYEAAEELGMDSLVEVHSREDLEKVFSVIR  171 (251)
T ss_dssp             HHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHH-HHHHHHHTTTCEEEEEECSHHHHHHHHTTCC
T ss_pred             HHHHhhcccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHH-HHHHHHHHhCCeeecccCCHHHHHHHhcccc
Confidence            66778888999988821            233210      0111222 23345567787664 4775321     0011


Q ss_pred             C--CcCCcCCCC--CccHHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           88 I--SPAENRTIP--PLKYEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        88 ~--~~ad~~~i~--~~~~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .  -+-+++...  .++.+...++....| +..+|+-+||.|++|++.+ ..|+|+|.||.++|..+..
T Consensus       172 a~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p  239 (251)
T d1i4na_         172 PKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENP  239 (251)
T ss_dssp             CSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSH
T ss_pred             cceeeeeecchhccchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCH
Confidence            0  001222111  233444556665554 5789999999999999765 6799999999999997764

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=95.32  E-value=0.0098  Score=53.67  Aligned_cols=65  Identities=22%  Similarity=0.290  Sum_probs=48.4

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+.++|+|.|.|..-    .|.+..        -.+.+..+.+.++++|| ..|+|.|++.++.++++|||+|-+|-|
T Consensus       158 ~L~~aG~D~ivID~A----hG~s~~--------~~~~i~~ik~~~~~v~v-IaGNV~T~e~a~~L~~~GaD~VkVGiG  222 (388)
T d1eepa_         158 ELVKAHVDILVIDSA----HGHSTR--------IIELIKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLKVGIG  222 (388)
T ss_dssp             HHHHTTCSEEEECCS----CCSSHH--------HHHHHHHHHHHCTTCEE-EEEEECSHHHHHHHHTTTCSEEEECSS
T ss_pred             HHHhhccceeeeecc----ccchHH--------HHHHHHHHHHHCCCCce-eeccccCHHHHHHHHhcCCCeeeeccc
Confidence            456799999999752    232110        13456666667788987 568899999999999999999999855

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=95.23  E-value=0.036  Score=46.99  Aligned_cols=47  Identities=17%  Similarity=0.147  Sum_probs=37.5

Q ss_pred             HHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.+++.+. .++.+|+.+||.|++|+..+ +.|+|||.||.++|.+|..
T Consensus       198 l~~~i~~~~~~~i~IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~  245 (254)
T d1vc4a_         198 LGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL  245 (254)
T ss_dssp             HHHHHHHTTCCSEEEEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCH
T ss_pred             hhhcccccCCCCEEEEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCH
Confidence            33444433 36789999999999998765 5799999999999999885

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=95.05  E-value=0.25  Score=41.20  Aligned_cols=94  Identities=16%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             CCccEEEEecC-C--CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCce
Q 023442           39 TNVPVSVKCRI-G--VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLT  115 (282)
Q Consensus        39 ~~ipvsvKiR~-G--~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ip  115 (282)
                      .++|+.+=+-. |  ..+..+. +.+...++++.+.|+|.+-+--     .+            +.+.+.++++....+|
T Consensus       135 ~glP~v~e~~p~g~~~~~~~~~-~~v~~aaria~ElGaDivK~~~-----p~------------~~~~~~~~v~~a~~~p  196 (251)
T d1ojxa_         135 FDLPLVVWSYPRGGKVVNETAP-EIVAYAARIALELGADAMKIKY-----TG------------DPKTFSWAVKVAGKVP  196 (251)
T ss_dssp             HTCCEEEEECCCSTTCCCTTCH-HHHHHHHHHHHHHTCSEEEECC-----CS------------SHHHHHHHHHHTTTSC
T ss_pred             cCCeEEEEEeecCCccccCCCH-HHHHHHHHHHHHhCCCEEEecC-----CC------------cHHHHHHHHHhcCCCc
Confidence            38998665532 1  1222233 3445567888899999886522     22            1344455555444677


Q ss_pred             EEEccCC--CCHHHHHHHHH----cCCCEEEecHHhhhCCc
Q 023442          116 FTLNGGI--NTVDEVNAALR----KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       116 Vi~nGdI--~s~eda~~~l~----~g~DgVmIGRgal~nP~  150 (282)
                      |+..||=  .+.+++.+..+    .||-||++||.+...|.
T Consensus       197 v~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~  237 (251)
T d1ojxa_         197 VLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD  237 (251)
T ss_dssp             EEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT
T ss_pred             eEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCc
Confidence            7666553  46777766653    79999999999975544

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.075  Score=43.78  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             cEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccC
Q 023442           42 PVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGG  121 (282)
Q Consensus        42 pvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGd  121 (282)
                      ||..=+|.  ++.++..+    +++.+.+.|+..|.|.-|+..               ..+.+.+++++++++ ++|.|-
T Consensus        16 ~iipvlr~--~~~~~a~~----~~~al~~~Gi~~iEitl~tp~---------------a~~~I~~l~~~~p~~-~vGaGT   73 (213)
T d1wbha1          16 PVVPVIVV--KKLEHAVP----MAKALVAGGVRVLNVTLRTEC---------------AVDAIRAIAKEVPEA-IVGAGT   73 (213)
T ss_dssp             SEEEEECC--SSGGGHHH----HHHHHHHTTCCEEEEESCSTT---------------HHHHHHHHHHHCTTS-EEEEES
T ss_pred             CEEEEEEC--CCHHHHHH----HHHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHHCCCC-eeeccc
Confidence            55544674  33334433    445677899999999998731               167788888888887 689999


Q ss_pred             CCCHHHHHHHHHcCCCEEE
Q 023442          122 INTVDEVNAALRKGAHHVM  140 (282)
Q Consensus       122 I~s~eda~~~l~~g~DgVm  140 (282)
                      |.|.++++++++.||+.++
T Consensus        74 V~~~~~~~~a~~aGa~Fiv   92 (213)
T d1wbha1          74 VLNPQQLAEVTEAGAQFAI   92 (213)
T ss_dssp             CCSHHHHHHHHHHTCSCEE
T ss_pred             cccHHHHHHHHHCCCcEEE
Confidence            9999999999999999887

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.93  E-value=0.012  Score=52.79  Aligned_cols=64  Identities=22%  Similarity=0.277  Sum_probs=46.9

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      +-++|++.|.|..-    .|.+..        ..+.+.++++.++++||| .|+|.|++.++.+++.|||+|-+|-|
T Consensus       115 l~~agvd~ivID~A----~G~s~~--------~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkVGiG  178 (365)
T d1zfja1         115 LFEAGADAIVIDTA----HGHSAG--------VLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGIG  178 (365)
T ss_dssp             HHHHTCSEEEECCS----CTTCHH--------HHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHcCCCEEEEECC----cccccc--------hhHHHHHHHhhCCCccee-ecccccHHHHHHHHhcCCceEEeeec
Confidence            34789999998632    232110        134456666667888887 69999999999999999999999843

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=94.92  E-value=0.13  Score=42.20  Aligned_cols=88  Identities=19%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             HHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHH
Q 023442           29 GEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALL  108 (282)
Q Consensus        29 ~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~  108 (282)
                      .++++.+++.-=+||   +|.  ++.+....    +++.+.+.|+..|.|.-|+..               .++.+.++.
T Consensus         5 ~~~~~~l~~~~iipv---lr~--~~~~~~~~----~~~al~~~Gi~~iEitl~~~~---------------a~~~I~~l~   60 (212)
T d1vhca_           5 QQIIEKLRELKIVPV---IAL--DNADDILP----LADTLAKNGLSVAEITFRSEA---------------AADAIRLLR   60 (212)
T ss_dssp             HHHHHHHHHHCEEEE---ECC--SSGGGHHH----HHHHHHHTTCCEEEEETTSTT---------------HHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEE---EeC--CCHHHHHH----HHHHHHHCCCCEEEEeCCChh---------------HHHHHHHHH
Confidence            466677766422344   564  23233333    455677899999999998631               167787887


Q ss_pred             hcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          109 RDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       109 ~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ++++++ ++|.|-|.|.+|++++.+.|++.++-
T Consensus        61 ~~~p~~-~vGaGTV~~~~~~~~a~~aGa~FivS   92 (212)
T d1vhca_          61 ANRPDF-LIAAGTVLTAEQVVLAKSSGADFVVT   92 (212)
T ss_dssp             HHCTTC-EEEEESCCSHHHHHHHHHHTCSEEEC
T ss_pred             hcCCCc-eEeeeecccHHHHHHHHhhCCcEEEC
Confidence            778885 68999999999999999999998873

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.89  E-value=0.21  Score=40.89  Aligned_cols=40  Identities=15%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          111 FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       111 ~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .++++|..-||| +.+.+..+.+.|||.+.+|++++.++.+
T Consensus       166 ~~~~~I~vDGGI-n~~~i~~l~~aGad~~V~Gsaif~~~d~  205 (217)
T d2flia1         166 GLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKASDL  205 (217)
T ss_dssp             TCCCEEEEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             CCCeEEEEeCCC-CHHHHHHHHHCCCCEEEEchHHhCCCCH
Confidence            457899999999 5778999999999999999999888875

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=94.71  E-value=0.12  Score=42.48  Aligned_cols=61  Identities=16%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      +++.+.+.|+..|.|.-|+..               .++.+..++++++++ ++|.|-|.|.++++++.+.|++.++
T Consensus        34 ~~~al~~~Gi~~iEitl~~p~---------------a~~~i~~l~~~~p~~-~vGaGTV~~~~~~~~a~~aGa~Fiv   94 (216)
T d1mxsa_          34 LADALAAGGIRTLEVTLRSQH---------------GLKAIQVLREQRPEL-CVGAGTVLDRSMFAAVEAAGAQFVV   94 (216)
T ss_dssp             HHHHHHHTTCCEEEEESSSTH---------------HHHHHHHHHHHCTTS-EEEEECCCSHHHHHHHHHHTCSSEE
T ss_pred             HHHHHHHCCCCEEEEeCCChh---------------HHHHHHHHHHhCCCc-ceeeeeeecHHHHHHHHhCCCCEEE
Confidence            345677899999999998631               267788888888885 6899999999999999999999876

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=94.59  E-value=0.1  Score=44.15  Aligned_cols=72  Identities=11%  Similarity=-0.035  Sum_probs=59.0

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++.+++.|+++|.|..-..+++|.            ++.+.++.+. .++||.-.-=|.++-++.+....|||+|.+--
T Consensus        70 ~A~~y~~~GA~aiSVLTe~~~F~Gs------------~~dl~~v~~~-~~iPvLrKDFIid~~QI~ea~~~GADaVLLIa  136 (254)
T d1vc4a_          70 AALAYARGGARAVSVLTEPHRFGGS------------LLDLKRVREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIV  136 (254)
T ss_dssp             HHHHHHHTTCSEEEEECCCSSSCCC------------HHHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHTTCSEEEEEH
T ss_pred             HHHHHHhcCCceEEEEcCccccccc------------HHHHHHHHHH-cCCCcccCCccccHHHHHHHHhccchHHHHHH
Confidence            4667889999999999866666664            6777666554 68999999999999999999999999998886


Q ss_pred             HhhhC
Q 023442          144 AAYQN  148 (282)
Q Consensus       144 gal~n  148 (282)
                      +++.+
T Consensus       137 all~~  141 (254)
T d1vc4a_         137 ALLGE  141 (254)
T ss_dssp             HHHGG
T ss_pred             HHHHH
Confidence            66554

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.55  E-value=0.12  Score=44.10  Aligned_cols=111  Identities=13%  Similarity=0.063  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhh---cCCccEEEEecC---CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCc
Q 023442           26 KFVGEAMSVIAA---NTNVPVSVKCRI---GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPL   99 (282)
Q Consensus        26 ~~~~eiv~~v~~---~~~ipvsvKiR~---G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~   99 (282)
                      +...+.++.+.+   ..++|+.+=+=.   +..+.....+.+...++.+.+.|+|.+-+---     |.  ..     ..
T Consensus       136 e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p-----~~--~~-----~~  203 (291)
T d1to3a_         136 QQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMP-----LY--GK-----GA  203 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCG-----GG--GC-----SC
T ss_pred             HHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecC-----CC--ch-----hh
Confidence            333444454443   348888775421   12222222333334567778899998765421     10  00     01


Q ss_pred             cHHH---HHHHHhcCCCce-EEEccCCCCHHHHHHHHH----cCCCEEEecHHhhhCCc
Q 023442          100 KYEY---YYALLRDFPDLT-FTLNGGINTVDEVNAALR----KGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       100 ~~~~---i~~l~~~~~~ip-Vi~nGdI~s~eda~~~l~----~g~DgVmIGRgal~nP~  150 (282)
                      .|+.   +.++.. ...+| |+.+||. +.++..+.++    .||.|+++||.+..+|.
T Consensus       204 ~~~~~~~~~~~~~-~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~  260 (291)
T d1to3a_         204 RSDLLTASQRLNG-HINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSVI  260 (291)
T ss_dssp             HHHHHHHHHHHHH-TCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGGT
T ss_pred             hHHHHHHHHHHhh-cCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCcc
Confidence            1332   334443 34688 6677786 5667766654    79999999999988873

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.021  Score=48.44  Aligned_cols=121  Identities=13%  Similarity=0.111  Sum_probs=70.4

Q ss_pred             ccccccCCHHHHHHHHHHHhhcC-CccEEEEecC--CCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCc
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANT-NVPVSVKCRI--GVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAEN   93 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~-~ipvsvKiR~--G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~   93 (282)
                      ||...-.+.+.+.+-++++++.+ .-++.+|+=+  +.=.  + +++...+.+++.++|+|+|--+..... .|.++   
T Consensus       107 ~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Lt--d-~e~i~~a~~ia~~aGadFvKTSTG~~~-~gat~---  179 (250)
T d1p1xa_         107 YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELK--D-EALIRKASEISIKAGADFIKTSTGKVA-VNATP---  179 (250)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHC--S-HHHHHHHHHHHHHTTCSEEECCCSCSS-CCCCH---
T ss_pred             chhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccC--c-HHHHHHHHHHHHHcCcCeEEecCCcCC-CCCCH---
Confidence            45555567788888888887765 2345566532  1111  1 233333456778999999876643210 12111   


Q ss_pred             CCCCCccHHHHHHHHhc---CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           94 RTIPPLKYEYYYALLRD---FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        94 ~~i~~~~~~~i~~l~~~---~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                           -....+.+.+++   ..++.|=++|||+|++|+.++++.|++-  +|-..+ +|..|
T Consensus       180 -----~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~--iG~~~~-~~~~f  233 (250)
T d1p1xa_         180 -----ESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADEL--FGADWA-DARHY  233 (250)
T ss_dssp             -----HHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHH--HCTTSC-STTTB
T ss_pred             -----HHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHH--hCcccc-ccCce
Confidence                 112333444432   1368899999999999999999965542  232222 56665

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=94.39  E-value=0.32  Score=39.97  Aligned_cols=47  Identities=6%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhh
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~  147 (282)
                      +++.+.++.+. .++||.+.-.+.|.+++.++++ ..||.|++--.-++
T Consensus       101 d~~~~~~l~~~-~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~G  148 (244)
T d2chra1         101 NTQALRRLSDN-NRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMG  148 (244)
T ss_dssp             CHHHHHHHHHH-CSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHT
T ss_pred             cchhhhhhccc-eeeeeeecccccccchhhhhhhcceeEEEeecccccc
Confidence            46777777765 4899999999999999999998 66998877644433

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.33  E-value=0.053  Score=48.52  Aligned_cols=102  Identities=17%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEe---------cCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcC
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKC---------RIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENR   94 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKi---------R~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~   94 (282)
                      .|+...+-++.+++....|+..+.         .+|..+  ...+    ....+.++|++.+.++.-.    |.+..   
T Consensus        80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~--~~~~----~~~~l~~agv~vi~id~a~----g~~~~---  146 (378)
T d1jr1a1          80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHE--DDKY----RLDLLALAGVDVVVLDSSQ----GNSIF---  146 (378)
T ss_dssp             CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSST--HHHH----HHHHHHHHTCCEEEECCSS----CCSHH---
T ss_pred             CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCH--HHHH----HHHHHHhhccceEeeeccC----ccchh---
Confidence            466666777777766555543321         123322  1111    1234567899999998642    22100   


Q ss_pred             CCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           95 TIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        95 ~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                           -.+.+..+.+..+++||| .|.|.|++.++.+++.|||+|-+|-|
T Consensus       147 -----~~~~i~~ik~~~~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGiG  190 (378)
T d1jr1a1         147 -----QINMIKYMKEKYPNLQVI-GGNVVTAAQAKNLIDAGVDALRVGMG  190 (378)
T ss_dssp             -----HHHHHHHHHHHSTTCEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             -----hHHHHHHHHHHCCCCcee-ecccccHHHHHHHHHhCCCEEeeccc
Confidence                 123445555566788875 79999999999999999999988865

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.06  Score=45.58  Aligned_cols=50  Identities=20%  Similarity=0.195  Sum_probs=39.5

Q ss_pred             HHHHHHHHhcCC-CceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          101 YEYYYALLRDFP-DLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       101 ~~~i~~l~~~~~-~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+...++....| +..+|+-+||.|++|+..+ ..|+|+|.||.++|..|..
T Consensus       195 ~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~dp  245 (254)
T d1piia2         195 LNRTRELAPKLGHNVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDDL  245 (254)
T ss_dssp             THHHHHHHHHHCTTSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCH
T ss_pred             hHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCH
Confidence            444445554433 5778999999999999775 6689999999999998885

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.04  E-value=0.91  Score=36.88  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +.....++++.+++. ++-+.+-+...-    .++.+    ...+...-+|.+.+-+=...++|..      .-+-.++-
T Consensus        96 ~~~~~~~~i~~i~~~-g~~~Gial~p~t----~~~~~----~~~l~~~~~d~vlim~V~pG~~GQ~------f~~~~l~K  160 (221)
T d1tqxa_          96 DTERCIQLAKEIRDN-NLWCGISIKPKT----DVQKL----VPILDTNLINTVLVMTVEPGFGGQS------FMHDMMGK  160 (221)
T ss_dssp             CHHHHHHHHHHHHTT-TCEEEEEECTTS----CGGGG----HHHHTTTCCSEEEEESSCTTCSSCC------CCGGGHHH
T ss_pred             ccchhhHHHHHHHhc-CCeEEEeecccc----ccccc----hhhcccccccEEEEEeecccccccc------cCcchhHH
Confidence            344555666776654 444444444321    22221    2233334588887765332222321      11223666


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +.++.+..+++.|..-||| +.+.+..+.+.|||.+.+|++++.++..
T Consensus       161 I~~lr~~~~~~~I~VDGGI-n~~~i~~l~~aGad~iV~GS~if~~~d~  207 (221)
T d1tqxa_         161 VSFLRKKYKNLNIQVDGGL-NIETTEISASHGANIIVAGTSIFNAEDP  207 (221)
T ss_dssp             HHHHHHHCTTCEEEEESSC-CHHHHHHHHHHTCCEEEESHHHHTCSSH
T ss_pred             HHHHHHhcCCcceEEEccc-CHHhHHHHHHcCCCEEEEChHHHCCCCH
Confidence            7777776778999999999 6788999999999999999998887764

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.77  E-value=0.094  Score=45.92  Aligned_cols=99  Identities=20%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHH
Q 023442           24 DPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        24 ~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~  103 (282)
                      +|+...+.++.+++. ..++.+=+  |.+. +. .+.+   . .+-++|++.++|..-    .|.+..        ..+.
T Consensus        71 ~~e~~~~~i~~vk~~-~~~v~~~v--gv~~-~~-~e~~---~-~li~agvd~ivId~A----~G~~~~--------~~~~  129 (330)
T d1vrda1          71 TPDEQARQVSIVKKT-RLLVGAAV--GTSP-ET-MERV---E-KLVKAGVDVIVIDTA----HGHSRR--------VIET  129 (330)
T ss_dssp             CHHHHHHHHHHHHTC-CBCCEEEE--CSST-TH-HHHH---H-HHHHTTCSEEEECCS----CCSSHH--------HHHH
T ss_pred             chhhhHHHHHHHhhh-ccEEEEEE--ecCH-HH-HHHH---H-HHHHCCCCEEEEecC----CCCchh--------HHHH
Confidence            467777777777654 33444333  3333 22 2222   2 334789999998632    122100        1344


Q ss_pred             HHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442          104 YYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus       104 i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      +..+.+.++++|| ..|+|.|++-++.+++.|||+|-+|-|
T Consensus       130 ik~ik~~~~~~~v-iaGnV~t~~~a~~l~~~GaD~v~VGig  169 (330)
T d1vrda1         130 LEMIKADYPDLPV-VAGNVATPEGTEALIKAGADAVKVGVG  169 (330)
T ss_dssp             HHHHHHHCTTSCE-EEEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHhCCCCCE-EeechhHHHHHHHHHHcCCCEEeeccc
Confidence            5566666778876 568899999999999999999988743

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.53  E-value=0.64  Score=37.85  Aligned_cols=73  Identities=19%  Similarity=0.372  Sum_probs=52.7

Q ss_pred             CCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           72 PTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        72 Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      -+|.+.+-+=...++|..      .-+-.++-+.++.+..++++|..-||| +.+.+..+.+.|||.+.+|+++++++..
T Consensus       133 ~~d~vlim~v~PG~~GQ~------f~~~~l~kI~~l~~~~~~~~I~VDGGI-n~~~i~~l~~aGad~~V~GS~if~~~d~  205 (220)
T d1h1ya_         133 PVELVLVMTVEPGFGGQK------FMPEMMEKVRALRKKYPSLDIEVDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEP  205 (220)
T ss_dssp             CCSEEEEESSCTTCSSCC------CCGGGHHHHHHHHHHCTTSEEEEESSC-STTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             ccceEEEEecCCCCcccc------cchhhhHHHHHHHhcCCCceEEEEecC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
Confidence            367777654332223321      122236777788777789999999999 6678888888999999999999888774

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.46  E-value=0.034  Score=45.57  Aligned_cols=45  Identities=29%  Similarity=0.524  Sum_probs=37.8

Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+++.+..-++++|++..||| |.+++.+.++.|+.+|.+|..+..
T Consensus       138 ~~lk~l~~p~p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~  182 (202)
T d1wa3a1         138 QFVKAMKGPFPNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVK  182 (202)
T ss_dssp             HHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred             HHHHHHhCcccCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcC
Confidence            345566655789999999999 899999999999999999987653

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=92.83  E-value=0.58  Score=38.21  Aligned_cols=44  Identities=5%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             ccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442           99 LKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus        99 ~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      -+++...++.+. .++||.+.-.+.|.+++..+++ ..+|.|++-=
T Consensus       100 ~~~~~~~~l~~~-~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~  144 (243)
T d1nu5a1         100 ANFGALRRLTEQ-NGVAILADESLSSLSSAFELARDHAVDAFSLKL  144 (243)
T ss_dssp             TCHHHHHHHHHH-CSSEEEESTTCCSHHHHHHHHHTTCCSEEEECH
T ss_pred             ccccccccchhc-cccccccccccccchhhhhcccccccccccccc
Confidence            347777777765 4899999999999999999999 5689887753

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.065  Score=42.55  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             HhCCCCEEEEecCC-cccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRK-ALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt-~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|++.+.+|... ....|...      .+-.++.+.+...  .++++...||+ +++++.++++.|+|.+++||+++.
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~~~~------~~~~l~~i~~~~~--~~~~i~~~gGi-~~~~~~~~~~~Gad~iVVGr~I~~  194 (213)
T d1q6oa_         124 RDAGIGQVVYHRSRDAQAAGVAW------GEADITAIKRLSD--MGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRD  194 (213)
T ss_dssp             HHTTCCEEEEECCHHHHHTTCCC------CHHHHHHHHHHHH--TTCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHHT
T ss_pred             HHhHHHHHHHHHhcccCcCCeeC------CHHHHHHHHHhhc--cCceEecCCCc-CcCCHHHHHHcCCCEEEEChhhcC
Confidence            45677777776422 11112110      1112333444433  46888888887 688999988899999999999866


Q ss_pred             CCc
Q 023442          148 NPW  150 (282)
Q Consensus       148 nP~  150 (282)
                      ...
T Consensus       195 a~d  197 (213)
T d1q6oa_         195 AAS  197 (213)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            544

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.08  E-value=0.18  Score=41.00  Aligned_cols=62  Identities=11%  Similarity=-0.054  Sum_probs=48.1

Q ss_pred             HHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEE
Q 023442           63 FIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVM  140 (282)
Q Consensus        63 ~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVm  140 (282)
                      .+++.+.+.|+..+.|.-|+..               .++.+.++.+.+ +++ ++|.|-|.|.+|++++++.||+.++
T Consensus        25 ~~~~al~~~Gi~~iEitlr~p~---------------a~~~i~~l~~~~~~~~-~vGaGTV~~~~~~~~a~~aGa~fiv   87 (202)
T d1wa3a1          25 EKALAVFEGGVHLIEITFTVPD---------------ADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESGAEFIV   87 (202)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTT---------------HHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHcCCCEEEEecCCcc---------------HHHHHHHHHHhcCCCc-EEEecccccHHHHHHHHhhcccEEe
Confidence            3566778999999999988631               156666655432 344 6899999999999999999999886

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=91.71  E-value=0.82  Score=37.22  Aligned_cols=42  Identities=10%  Similarity=0.019  Sum_probs=34.4

Q ss_pred             cHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442          100 KYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus       100 ~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      +++...++.+. .++||.+...+.|.+++.++++ ..+|.+++-
T Consensus       101 d~~~~~~L~~~-~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d  143 (242)
T d1muca1         101 NRGGQVRLNQR-TPAPIMADESIESVEDAFSLAADGAASIFALK  143 (242)
T ss_dssp             CHHHHHHHHHH-CSSCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred             hhhhhhhhhhh-hhheeecccccccccchhhhhhcccccccccc
Confidence            46667777665 5799999999999999999998 568888764

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=0.4  Score=37.73  Aligned_cols=107  Identities=14%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             cccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           18 GVSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        18 Gs~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      -+.|+++..+     +.+.++++++.. ..++.|-.+       +.++..     .+.++|+|.|-+-.-       +|.
T Consensus        51 d~ilikdNHi~~~g~i~~~i~~~k~~~~~~~I~VEv~-------s~~q~~-----~a~~~~~diImLDN~-------sp~  111 (169)
T d1qpoa1          51 DAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVD-------SLEQLD-----AVLPEKPELILLDNF-------AVW  111 (169)
T ss_dssp             SSEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEES-------SHHHHH-----HHGGGCCSEEEEETC-------CHH
T ss_pred             ceEEeehhHHhHhcchhhhhhhhhhhcCCCceEEEec-------cHHHhh-----hhhhcCCcEEEecCc-------ChH
Confidence            4556666554     356777776644 456666543       344432     234789998876542       121


Q ss_pred             CcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           92 ENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      +      + -+.+..+....+++.+-++||| +.+.+.++..+|+|.+.+|---..-|++
T Consensus       112 ~------~-k~~v~~~~~~~~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~galt~sa~~l  163 (169)
T d1qpoa1         112 Q------T-QTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVRVL  163 (169)
T ss_dssp             H------H-HHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBCCC
T ss_pred             h------H-HHHHHHhhccCCeeEEEEeCCC-CHHHHHHHHHcCCCEEECCccccCCCcc
Confidence            1      0 1223333334567889999999 8999999999999999999433433553

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.04  E-value=1.7  Score=33.87  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             cccccCCHHH-----HHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcC
Q 023442           18 GVSLMLDPKF-----VGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPA   91 (282)
Q Consensus        18 Gs~Ll~~p~~-----~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~a   91 (282)
                      -+.|+++-.+     +.+.++.++... ..++.|-++       +.+++.+     +.++|+|.|-+---+         
T Consensus        51 d~iLIkdNHi~~~~~~~~~~~~~~~~~~~~~IeVEv~-------~~~~~~~-----a~~~g~diImLDN~~---------  109 (167)
T d1qapa1          51 DAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVE-------NLDELDD-----ALKAGADIIMLDNFN---------  109 (167)
T ss_dssp             SCEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEES-------SHHHHHH-----HHHTTCSEEEESSCC---------
T ss_pred             ceeEechhhHhhhhhhhhhhHHHhhcCCCceEEEecC-------cHHHHHH-----HHhcCCcEEEecCCC---------
Confidence            3455555543     234455554332 455555432       3444322     236899988664321         


Q ss_pred             CcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           92 ENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                               -+.+.+.++. .+++.+-++||| +.+.+.++.++|+|.|.+|.--..-|++
T Consensus       110 ---------pe~~~~av~~i~~~~~lEaSGgI-~~~ni~~ya~~GVD~IS~galt~~a~~~  160 (167)
T d1qapa1         110 ---------TDQMREAVKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHVRAL  160 (167)
T ss_dssp             ---------HHHHHHHHHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEEECC
T ss_pred             ---------HHHHHHHHHhcCCceEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCCcc
Confidence                     1333344443 246889999999 8999999999999999999655555554

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.01  E-value=1.6  Score=34.48  Aligned_cols=37  Identities=30%  Similarity=0.523  Sum_probs=24.9

Q ss_pred             CceEEEccCCC-CHHHHHHHHHcCCCEEEecHHhhhCCc
Q 023442          113 DLTFTLNGGIN-TVDEVNAALRKGAHHVMVGRAAYQNPW  150 (282)
Q Consensus       113 ~ipVi~nGdI~-s~eda~~~l~~g~DgVmIGRgal~nP~  150 (282)
                      ++.++.-| |. ...+..++++.|+|.+.+||++...+.
T Consensus       156 ~~~i~~pG-I~~~~~~~~~ai~~Gad~iVvGR~I~~a~d  193 (206)
T d2czda1         156 GIKILAPG-IGAQGGKAKDAVKAGADYIIVGRAIYNAPN  193 (206)
T ss_dssp             TCEEEECC-CCSSTTHHHHHHHHTCSEEEECHHHHTSSS
T ss_pred             cceEECCC-ccccCCCHHHHHHhCCCEEEEChhhccCCC
Confidence            34444444 33 234566667789999999999987665

>d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Leishmania mexicana [TaxId: 5665]

Probab=90.64  E-value=0.071  Score=44.90  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.|. |. |..
T Consensus       204 ~i~ilYGGSV-~~~N~~~i~~~~~vdG~LVG~ASl~-~~-F~~  243 (249)
T d1n55a_         204 KLRILYGGSV-NAANAATLYAKPDINGFLVGGASLK-PE-FRD  243 (249)
T ss_dssp             HCEEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TT-HHH
T ss_pred             cccEEEcCCC-CHhHHHHHhcCCCCCeEEeehhhcC-HH-HHH
Confidence            5899999998 8899999998 89999999999994 88 643

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=90.60  E-value=1.4  Score=36.88  Aligned_cols=106  Identities=16%  Similarity=0.190  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-----ccCCCCcCCcCCCCCcc
Q 023442           26 KFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-----LLNGISPAENRTIPPLK  100 (282)
Q Consensus        26 ~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-----~~~G~~~ad~~~i~~~~  100 (282)
                      +.+.+.++.|..++++||++.+-.|+.+.   ..+.+. .+.++++|+..|.+--.+.     ...|.      ......
T Consensus        62 ~e~~~~~~~I~~~~~lPv~~D~d~GyG~~---~~v~~t-v~~~~~aGaagi~iEDq~~pk~~~~~~~~------~~~~~~  131 (275)
T d1s2wa_          62 TQVVEVLEFMSDASDVPILLDADTGYGNF---NNARRL-VRKLEDRGVAGACLEDKLFPKTNSLHDGR------AQPLAD  131 (275)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEECCSSCSSH---HHHHHH-HHHHHHTTCCEEEEECBCC--------CT------TCCBCC
T ss_pred             hhHHHHHHhhhcccCCceeEecccccccc---hHHHHH-HHHHHHhccceeEeecccccccccccccc------cccccc
Confidence            45667778888899999999999998543   234443 3457899999999964321     11221      111111


Q ss_pred             -HHHHH---HHHh--cCCCceEEEccCCC----CHHHHHHHH----HcCCCEEEe
Q 023442          101 -YEYYY---ALLR--DFPDLTFTLNGGIN----TVDEVNAAL----RKGAHHVMV  141 (282)
Q Consensus       101 -~~~i~---~l~~--~~~~ipVi~nGdI~----s~eda~~~l----~~g~DgVmI  141 (282)
                       -+...   ..+.  ..+++-|++--|-.    ..+++.+-.    +.|||+|++
T Consensus       132 ~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~  186 (275)
T d1s2wa_         132 IEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILM  186 (275)
T ss_dssp             HHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeee
Confidence             12222   2222  23566778777743    345554322    379999997

>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.50  E-value=0.58  Score=39.31  Aligned_cols=97  Identities=10%  Similarity=0.013  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCcc
Q 023442           23 LDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLK  100 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~  100 (282)
                      .+.+.-.+.|++||+++  ++.+.+..--+|+-    .+.++ +.+.+++.++.++.=                .+++-+
T Consensus        75 ~~~~~di~~v~aiRe~vG~~~~l~vDan~~~~~----~~Ai~-~~~~L~~~~l~wiEe----------------Pi~~~d  133 (278)
T d2gl5a1          75 DQLKMGEARIAAMREAMGDDADIIVEIHSLLGT----NSAIQ-FAKAIEKYRIFLYEE----------------PIHPLN  133 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCH----HHHHH-HHHHHGGGCEEEEEC----------------SSCSSC
T ss_pred             HHHHHHHHHHHHHHHHhccccceeecccccccc----hhhHH-HHHHhcccccceecc----------------cccccc
Confidence            34566778889999887  57788887777753    23333 466778877666520                112223


Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ++..+++.+. .++||.+.-.+.+.+++.++++ ..+|.+.+
T Consensus       134 ~~~~~~L~~~-~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~  174 (278)
T d2gl5a1         134 SDNMQKVSRS-TTIPIATGERSYTRWGYRELLEKQSIAVAQP  174 (278)
T ss_dssp             HHHHHHHHHH-CSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred             hhhhhhhccc-cccceecccccCChHHHhhhhccccceeEee
Confidence            6666777665 5899999889999999999999 66787654

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.40  E-value=0.42  Score=37.67  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHH
Q 023442           28 VGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYY  105 (282)
Q Consensus        28 ~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~  105 (282)
                      +.+.++.+++..  ..++.|-++       +.++..+     +.++|+|.|-+-.-+       |.+      + -+.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~I~VEv~-------~~~e~~~-----a~~~g~d~i~LDn~~-------pe~------~-k~~~~  117 (170)
T d1o4ua1          64 AERAVQEVRKIIPFTTKIEVEVE-------NLEDALR-----AVEAGADIVMLDNLS-------PEE------V-KDISR  117 (170)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEES-------SHHHHHH-----HHHTTCSEEEEESCC-------HHH------H-HHHHH
T ss_pred             HHHHHHHHHhhCCCCceEEEEeC-------cHHHHHH-----HHhcCccEEEEcCcC-------hhh------H-hHHHH
Confidence            345666666543  345666543       3444322     236899988765421       111      0 11222


Q ss_pred             HHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          106 ALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       106 ~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+....+++.+.++||| +.+.+.++.++|+|.+.+|.-...-|++
T Consensus       118 ~lk~~~~~i~lEaSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a~~~  162 (170)
T d1o4ua1         118 RIKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVFV  162 (170)
T ss_dssp             HHHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCCC
T ss_pred             HHHhhCCcEEEEEECCC-CHHHHHHHHHcCCCEEEcCccccCCCCc
Confidence            33333568999999999 8888888877999999999544444553

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.35  E-value=1.1  Score=38.85  Aligned_cols=116  Identities=20%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC-cccCCCCcCCcCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK-ALLNGISPAENRT   95 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt-~~~~G~~~ad~~~   95 (282)
                      .||.++++.+++.++-+     ++.||.+|=  |.-  .+.+++...+ ..+...|...|.+--|- ..+.+..    + 
T Consensus       183 I~A~~~~n~~LL~~~g~-----t~kpV~lKk--G~~--~s~~e~l~aa-e~i~~~Gn~~vilcERG~~t~~~~~----~-  247 (338)
T d1vr6a1         183 IGARNAQNFRLLSKAGS-----YNKPVLLKR--GFM--NTIEEFLLSA-EYIANSGNTKIILCERGIRTFEKAT----R-  247 (338)
T ss_dssp             ECGGGTTCHHHHHHHHT-----TCSCEEEEC--CTT--CCHHHHHHHH-HHHHHTTCCCEEEEECCBCCSCCSS----S-
T ss_pred             echhhccCHHHHHHhhc-----cCCcEEecC--ccc--cchhhhhhhH-HHHHhcCCccceeeecccccccccc----c-
Confidence            48899999988655433     489999994  321  2455655444 34457888888776543 2222211    1 


Q ss_pred             CCCccHHHHHHHHhcCCCceEEE----ccCCCCH--HHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTL----NGGINTV--DEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~----nGdI~s~--eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                       .-+++..+..+.+ ....|||.    .||-...  .-++.++..||||+||=-  --||.-
T Consensus       248 -~~lD~~~i~~~k~-~~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~--Hp~P~~  305 (338)
T d1vr6a1         248 -NTLDISAVPIIRK-ESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV--HPEPEK  305 (338)
T ss_dssp             -SBCCTTHHHHHHH-HBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB--CSCGGG
T ss_pred             -cchhhcccceeec-cccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe--CCCccc
Confidence             1122444444443 35789986    3443322  234445558999999973  345553

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.68  E-value=2  Score=34.85  Aligned_cols=51  Identities=8%  Similarity=0.005  Sum_probs=36.3

Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHH-HHHHHHH-cCCCEEEecHHhhh
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVD-EVNAALR-KGAHHVMVGRAAYQ  147 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~e-da~~~l~-~g~DgVmIGRgal~  147 (282)
                      +++-+++...++.+. .++||.+...+.+.. +...+++ ..+|.+++--+-++
T Consensus       109 ~~~~d~~~~~~l~~~-~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~G  161 (255)
T d1rvka1         109 MDEQSLSSYKWLSDN-LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG  161 (255)
T ss_dssp             SCTTCHHHHHHHHHH-CSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred             cccccHHHHHHHHHh-cccceeehhhcccchhhhhhhhhhchhhhccccccccc
Confidence            334456767777765 589999999998875 6778888 67888876644433

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=89.49  E-value=0.38  Score=39.26  Aligned_cols=63  Identities=17%  Similarity=0.124  Sum_probs=46.6

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .++|++.+-+.+-.. ..|             -.+++.+..=+++++++..||| |.+++.+.++.|+.++.+|..+.
T Consensus       124 ~~~G~~~vK~FPA~~-~gG-------------~~~lkal~~p~p~~~~~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~  186 (212)
T d1vhca_         124 LEMGISAVKFFPAEA-SGG-------------VKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV  186 (212)
T ss_dssp             HHTTCCEEEETTTTT-TTH-------------HHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred             HHCCCCEEEEccccc-cch-------------HHHHHHHhccccCCeEEecCCC-CHHHHHHHHhCCCEEEEEChhhC
Confidence            478888888775321 011             3556666665789999999999 67999999998888888886554

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.44  E-value=0.82  Score=38.84  Aligned_cols=75  Identities=11%  Similarity=0.002  Sum_probs=47.8

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE--ccCCCCHHHHHHHHHcCCCEEEec
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL--NGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~--nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      .+..+..|.+.+.+|...... ...+.. .......|+.+.++++. .+.|++.  .|.+.+++++.++.+.|+|+|.++
T Consensus       113 ~~~~~~~g~~ai~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~i~~~-~~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~  189 (329)
T d1p0ka_         113 KEAVEMIGANALQIHLNVIQE-IVMPEG-DRSFSGALKRIEQICSR-VSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIG  189 (329)
T ss_dssp             HHHHHHTTCSEEEEEECTTTT-C---------CTTHHHHHHHHHHH-CSSCEEEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHcCCCEEEecccccch-hhhccc-cccccchHHHHHHHHHH-cCCCcEEEecCCcchHHHHHHHHhcCCCEEEEc
Confidence            345678899999998643210 000000 01112236777777664 4566654  888899999999999999999983

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.95  E-value=1.2  Score=36.45  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcc-----cCCCCcC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-----LNGISPA   91 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-----~~G~~~a   91 (282)
                      ||..+-.+.+.+.+=+.++++.++ +..+|+=+-... -+-+++.. +.+++.++|+|+|--+.....     ..|. +.
T Consensus        89 ~~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~-L~~~ei~~-~~~~~~~aGadFIKTSTGf~~~g~~~~~~~-~~  164 (226)
T d1vcva1          89 IGLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPY-LRDEERYT-LYDIIAEAGAHFIKSSTGFAEEAYAARQGN-PV  164 (226)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGG-CCHHHHHH-HHHHHHHHTCSEEECCCSCCCHHHHHHTTC-CS
T ss_pred             HHHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccc-cCHHHHHH-HHHHHHHcCcceeeecccccCCcccccccC-cc
Confidence            455555678888887888887763 344665321100 01234433 456777899999876533210     0010 00


Q ss_pred             CcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH
Q 023442           92 ENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR  133 (282)
Q Consensus        92 d~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~  133 (282)
                       +.  -+.+...+.+..+. ..++-|=++|||+|.+++.++++
T Consensus       165 -~a--t~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~  204 (226)
T d1vcva1         165 -HS--TPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVD  204 (226)
T ss_dssp             -SC--CHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHH
T ss_pred             -cC--cHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHH
Confidence             00  01122334455443 23677889999999999999997

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=88.85  E-value=1.3  Score=36.93  Aligned_cols=106  Identities=11%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHhh---cCCccEEEEecC-CCCCCCcHHHHHHHHHHHHHhCCCCEEEEe-cCCcccCCCCcCCcCCCCC
Q 023442           24 DPKFVGEAMSVIAA---NTNVPVSVKCRI-GVDDHDSYNQLCDFIYKVSSLSPTRHFIIH-SRKALLNGISPAENRTIPP   98 (282)
Q Consensus        24 ~p~~~~eiv~~v~~---~~~ipvsvKiR~-G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH-~Rt~~~~G~~~ad~~~i~~   98 (282)
                      +++...++++.+|+   ..+.||.+-.-+ |.... +-.+.. .+ +...+.|+|++.++ -|+..              
T Consensus        56 ~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~-t~kd~~-di-~~a~~~~vD~ialSFVrs~~--------------  118 (258)
T d1pkla2          56 SHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAV-SAKDRV-DL-QFGVEQGVDMIFASFIRSAE--------------  118 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSS-CHHHHH-HH-HHHHHHTCSEEEETTCCSHH--------------
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCccccccccccccc-cccHHH-HH-HHHHhcCCCeEEEeCCCCHH--------------
Confidence            45555555555554   456666655443 32221 111111 11 23457899999986 55421              


Q ss_pred             ccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH--cCCCEEEecHHhhhCC
Q 023442           99 LKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR--KGAHHVMVGRAAYQNP  149 (282)
Q Consensus        99 ~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~--~g~DgVmIGRgal~nP  149 (282)
                       +...++++..+ ..+++||+  -|.+.+-+..+-+  .-+|||||+||=|+-=
T Consensus       119 -Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI~~~sDgImIaRGDLg~e  169 (258)
T d1pkla2         119 -QVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSIIEESDGIMVARGDLGVE  169 (258)
T ss_dssp             -HHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHHHHHSSEEEECHHHHTTT
T ss_pred             -HHHHHHHHHHHcCCCCceEE--EecCchhhhhhhhHHhhCCeeeEechhhhhh
Confidence             14445555543 23577777  6777777665555  4689999999997763

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.43  E-value=0.11  Score=43.84  Aligned_cols=40  Identities=18%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchhh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLGH  155 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~~  155 (282)
                      ++||++.|.| +++.+.++++ .++||+.||++.| ||. |..-
T Consensus       210 ~~~iLYGGSV-~~~N~~~i~~~~~vDG~LVGgASL-~~~-F~~I  250 (257)
T d1mo0a_         210 ATRIIYGGSV-TADNAAELGKKPDIDGFLVGGASL-KPD-FVKI  250 (257)
T ss_dssp             HSCEEEESSC-CTTTHHHHTTSTTCCEEEESGGGG-STH-HHHH
T ss_pred             cccEEeeCCc-CHHHHHHHhcCCCCCeEEeehHhC-ChH-HHHH
Confidence            4789999997 8888999998 8999999999999 588 7543

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=88.40  E-value=0.81  Score=37.24  Aligned_cols=67  Identities=18%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhC
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQN  148 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~n  148 (282)
                      .++|++.+-+.+-..  .|            ...+++.+..=+++++++..||| |.+++.+.++.|+.++.+|..+..+
T Consensus       125 ~~~G~~~vKlFPA~~--~G------------g~~~lkal~~p~p~~~~~ptGGV-~~~n~~~yl~~g~v~~~~Gs~l~~~  189 (213)
T d1wbha1         125 MDYGLKEFKFFPAEA--NG------------GVKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLVPA  189 (213)
T ss_dssp             HHTTCCEEEETTTTT--TT------------HHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred             HHCCCCEEEeccchh--cC------------hHHHHHHhcCcccCCceeeeCCC-CHHHHHHHHhCCCEEEEEChhhCCh
Confidence            467888887765321  11            03556666665789999999999 5789999999899888888665544


Q ss_pred             Cc
Q 023442          149 PW  150 (282)
Q Consensus       149 P~  150 (282)
                      .+
T Consensus       190 ~~  191 (213)
T d1wbha1         190 DA  191 (213)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]

Probab=88.11  E-value=2.2  Score=34.06  Aligned_cols=119  Identities=13%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCE-EEEe--cCCc------ccCC
Q 023442           17 FGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRH-FIIH--SRKA------LLNG   87 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~-i~VH--~Rt~------~~~G   87 (282)
                      |.+.-+.+++.+.+-+++..+. +.. ++|+.+|+.+.+   +-++.+..+-+..|-+. |.+-  .+-.      ....
T Consensus         5 y~~~~~d~~~~~~e~~~~~~~~-G~~-~~KikvG~~~~~---~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~   79 (227)
T d2mnra1           5 YDSHSLDGVKLATERAVTAAEL-GFR-AVKTKIGYPALD---QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQA   79 (227)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHT-TCS-EEEEECCCSSHH---HHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHH
T ss_pred             eccCCCCcHHHHHHHHHHHHHC-CCC-EEEEccCCCCHH---HHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHH
Confidence            5555667777766655554433 332 356777765421   11223333434444442 3332  2210      0000


Q ss_pred             CC--cCCc--CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           88 IS--PAEN--RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        88 ~~--~ad~--~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      ..  .-.|  ..+++-+++...++.+. .++||.+.-.+.|.+++..+++ ..+|.+.+
T Consensus        80 l~~~~~~~iEeP~~~~~~~~~~~l~~~-~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~  137 (227)
T d2mnra1          80 LQQEGVTWIEEPTLQHDYEGHQRIQSK-LNVPVQMGENWLGPEEMFKALSIGACRLAMP  137 (227)
T ss_dssp             HHHHTCSEEECCSCTTCHHHHHHHHHT-CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred             hhhchhhhhcCcccccchhhhHHHHHH-cCCccccCceeEeechhhhhHhcCceeeeec
Confidence            00  0112  22344457777777664 6899998889999999999999 66786655

>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=88.07  E-value=1.8  Score=35.06  Aligned_cols=40  Identities=20%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             CCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCC
Q 023442           96 IPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGA  136 (282)
Q Consensus        96 i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~  136 (282)
                      +++-+++.+.++.+. .++||.++-.+.|..++.++++.|+
T Consensus       100 ~~~~d~~~~~~l~~~-~~ipia~gE~~~~~~~~~~~i~~~a  139 (247)
T d1tzza1         100 GDPLDYALQAALAEF-YPGPMATGENLFSHQDARNLLRYGG  139 (247)
T ss_dssp             SCTTCHHHHHHHTTT-CCSCEEECTTCCSHHHHHHHHHHSC
T ss_pred             cccccchhhhhhhhc-cccccccchhhhhhHHHHHHHHccC
Confidence            334456666666654 5899999999999999999998543

>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=88.06  E-value=1.2  Score=36.33  Aligned_cols=115  Identities=7%  Similarity=0.016  Sum_probs=64.4

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCC-EEEE--ecCCc------ccCCCCc-
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTR-HFII--HSRKA------LLNGISP-   90 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~-~i~V--H~Rt~------~~~G~~~-   90 (282)
                      +-.+|+.+.+.++..++. +.. ++|+++|.+-    ++-++.+.++-+..|-+ .|.+  |.+-.      ..+.... 
T Consensus        12 ~~~s~ee~~~~a~~~~~~-Gf~-~~KikvG~~~----~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~   85 (252)
T d1yeya1          12 LGYSDEKLVRLAKEAVAD-GFR-TIKLKVGANV----QDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEF   85 (252)
T ss_dssp             ----CHHHHHHHHHHHHT-TCS-EEEEECCSCH----HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHc-CCC-EEEEECCCCH----HHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHhhhhc
Confidence            334677777777777664 544 3588877532    12233344444555654 2333  33210      0111110 


Q ss_pred             -CCc--CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           91 -AEN--RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        91 -ad~--~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                       -.|  ..+++-++....++.++..++||.+.=.+.++.++.++++ ..+|.+++
T Consensus        86 ~~~~iEeP~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~  140 (252)
T d1yeya1          86 DIAWIEEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI  140 (252)
T ss_dssp             CCSCEECCSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECC
T ss_pred             CceeecCCcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceecc
Confidence             112  2234445666666666656899988888999999999998 56887754

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=3.2  Score=34.91  Aligned_cols=112  Identities=17%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCc-ccCCCCcCCcCCCCCccHHH
Q 023442           25 PKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKA-LLNGISPAENRTIPPLKYEY  103 (282)
Q Consensus        25 p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~-~~~G~~~ad~~~i~~~~~~~  103 (282)
                      .+.+.+.++.|.+++++||++..=.|+.+.  ...+.+. .+.++++|+..+++--.+. ...|.  .+...+-+. -+.
T Consensus        62 ~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~--~~~v~~~-v~~~~~aGvagi~iEDq~~pk~~g~--~~~~~~~~~-~e~  135 (289)
T d1muma_          62 LDDVLTDIRRITDVCSLPLLVDADIGFGSS--AFNVART-VKSMIKAGAAGLHIEDQVGAKRCGH--RPNKAIVSK-EEM  135 (289)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEECTTCSSSS--HHHHHHH-HHHHHHHTCSEEEEECBCCCSSTTC--CSCCCBCCH-HHH
T ss_pred             hHHHHHHHHHHhcccCCCeeeccccccccc--chHHHHH-HHHHHHCCCCEEEecCccccccccc--ccccceecH-HHH
Confidence            456777788888889999999998887652  2233443 3456899999999964321 00121  111111121 233


Q ss_pred             HHHHH---hc--CCCceEEEccCCCCHHHHHHHH-------HcCCCEEEec
Q 023442          104 YYALL---RD--FPDLTFTLNGGINTVDEVNAAL-------RKGAHHVMVG  142 (282)
Q Consensus       104 i~~l~---~~--~~~ipVi~nGdI~s~eda~~~l-------~~g~DgVmIG  142 (282)
                      +.++.   ..  .+++-||+-=|-...+.+.+++       +.|||+|++-
T Consensus       136 ~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~  186 (289)
T d1muma_         136 VDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE  186 (289)
T ss_dssp             HHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEec
Confidence            33332   11  2456677766655433333332       2799999974

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.84  E-value=2  Score=33.97  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             HHHHHHhhcCCccEEEEecCCCCCC-----CcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHH
Q 023442           30 EAMSVIAANTNVPVSVKCRIGVDDH-----DSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYY  104 (282)
Q Consensus        30 eiv~~v~~~~~ipvsvKiR~G~d~~-----~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i  104 (282)
                      +.++.+++.++.|+...........     ....+    . ..+..+|++.+.++.........     .    .-++.+
T Consensus        56 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~gad~i~~~~~~~~~~~~-----~----~~~~~~  121 (230)
T d1yxya1          56 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTE----V-DQLAALNIAVIAMDCTKRDRHDG-----L----DIASFI  121 (230)
T ss_dssp             HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHH----H-HHHHTTTCSEEEEECCSSCCTTC-----C----CHHHHH
T ss_pred             hhHHHHHhhhhcchhhhhcccCCcceeeechhHHH----H-HHHHhcCCCEEEEecccccccch-----h----hHHHHH
Confidence            3456678888888876655432211     12222    1 23457899999988654321111     0    015666


Q ss_pred             HHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442          105 YALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus       105 ~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      ..+......+.  .-+++.|.++++.+.+.|+|.|.++
T Consensus       122 ~~~~~~~~~~~--v~~~v~t~~~a~~a~~~Gad~i~~~  157 (230)
T d1yxya1         122 RQVKEKYPNQL--LMADISTFDEGLVAHQAGIDFVGTT  157 (230)
T ss_dssp             HHHHHHCTTCE--EEEECSSHHHHHHHHHTTCSEEECT
T ss_pred             HHHHhcCCCce--EecCCCCHHHHHHHHhcCCCEEEee
Confidence            55555444433  3347999999999999999999764

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.53  E-value=2.2  Score=30.69  Aligned_cols=98  Identities=12%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .|-..+.++++.+-+..+.-|..     ..+   ..+..    ..+++...|.+.+.-+-....|             ++
T Consensus        10 DDd~~~~~~l~~~L~~~g~~v~~-----a~~---~~~a~----~~l~~~~~dlii~D~~mp~~~G-------------~e   64 (123)
T d1krwa_          10 DDDSSIRWVLERALAGAGLTCTT-----FEN---GNEVL----AALASKTPDVLLSDIRMPGMDG-------------LA   64 (123)
T ss_dssp             SSSHHHHHHHHHHHHHTTCEEEE-----ESS---SHHHH----HHHTTCCCSEEEECCSSSSSTT-------------HH
T ss_pred             ECCHHHHHHHHHHHHHCCCEEEE-----eCC---HHHHH----HHHHhCCCCEEEehhhcCCchH-------------HH
Confidence            44455566666665555554433     111   12222    2345666788777754332222             67


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+.++.+..+++|||.--+-.+.+++.++++.|++.      .+..|+-
T Consensus        65 l~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~d------yl~KP~~  107 (123)
T d1krwa_          65 LLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFD------YLPKPFD  107 (123)
T ss_dssp             HHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEE------ECSSCCH
T ss_pred             HHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCe------EEeCcCC
Confidence            777887777899999999999999999999988875      4456753

>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.07  E-value=0.19  Score=42.15  Aligned_cols=39  Identities=15%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.+. |. |..
T Consensus       204 ~~~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASl~-~e-F~~  243 (249)
T d1kv5a_         204 ELRILYGGSV-NGKNARTLYQQRDVNGFLVGGASLK-PE-FVD  243 (249)
T ss_dssp             HCCEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TT-HHH
T ss_pred             CCcEEEcCCC-CHhHHHHHhcCCCCCEEEechHhcC-HH-HHH
Confidence            4899999998 8899999998 89999999999995 88 654

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=86.95  E-value=0.74  Score=38.52  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             ccccccCCHHHHHHHHH---HHhhcCCccEEEEecC--C-CCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCc
Q 023442           17 FGVSLMLDPKFVGEAMS---VIAANTNVPVSVKCRI--G-VDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISP   90 (282)
Q Consensus        17 yGs~Ll~~p~~~~eiv~---~v~~~~~ipvsvKiR~--G-~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~   90 (282)
                      ||..+-.+.+.+.+.++   .+++..+ +..+|+=+  + +++    ++.......++.++|+|+|--+..... .|..+
T Consensus       108 ~~~l~~g~~~~v~e~~~~i~~~~~~~~-~~~lKVIlEt~~L~~----~e~i~~~~~~~~~aGadFVKTSTG~~~-~gat~  181 (256)
T d2a4aa1         108 YKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKT----EDLIIKTTLAVLNGNADFIKTSTGKVQ-INATP  181 (256)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCS----HHHHHHHHHHHHTTTCSEEECCCSCSS-CCCCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhhcc-CCeeEeeehhhhcCc----HHHHHHHHHHHHhcccHHHHhccCCCC-CCCCH
Confidence            34433344555555544   4444432 23356422  2 111    233333334456899999865532110 12211


Q ss_pred             CCcCCCCCccHHHHHHHHhc--------CCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCccc
Q 023442           91 AENRTIPPLKYEYYYALLRD--------FPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus        91 ad~~~i~~~~~~~i~~l~~~--------~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~if  152 (282)
                      .        ....+.+.+++        ..++.|=++|||+|++++.++++.|++.+  |-..+ +|..|
T Consensus       182 ~--------~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~l--G~~~~-~~~~f  240 (256)
T d2a4aa1         182 S--------SVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFL--SSLAC-HPDNF  240 (256)
T ss_dssp             H--------HHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHT--C-------CCE
T ss_pred             H--------HHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhc--ccccc-cCCce
Confidence            1        12223333321        24688999999999999999999666642  32222 66655

>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.74  E-value=0.14  Score=42.95  Aligned_cols=39  Identities=15%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.|. |. |..
T Consensus       201 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL~-~e-F~~  240 (246)
T d1r2ra_         201 STRIIYGGSV-TGATCKELASQPDVDGFLVGGASLK-PE-FVD  240 (246)
T ss_dssp             HCCEEECSCC-CTTTHHHHHTSTTCCEEEESGGGGS-TH-HHH
T ss_pred             cccEEecCCC-CHHHHHHHhcCCCCCeEEeehhhCC-HH-HHH
Confidence            5899999998 8889999998 89999999999994 88 753

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.58  E-value=0.23  Score=41.51  Aligned_cols=39  Identities=10%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.++++ .++||+.||++.|. +. |..
T Consensus       201 ~i~ilYGGSV-~~~N~~~i~~~~~idG~LVG~ASL~-~~-F~~  240 (246)
T d1o5xa_         201 QIRILYGGSV-NTENCSSLIQQEDIDGFLVGNASLK-ES-FVD  240 (246)
T ss_dssp             HSEEEECSCC-CTTTHHHHHTSTTCCEEEECGGGGS-TT-HHH
T ss_pred             cccEEEeCCC-CHhHHHHHhcCCCCCEEEeecccCC-HH-HHH
Confidence            5899999998 8899999998 89999999999995 66 544

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]

Probab=86.54  E-value=2.4  Score=34.19  Aligned_cols=113  Identities=13%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             ccCCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcc-------cCCCCc--C
Q 023442           21 LMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKAL-------LNGISP--A   91 (282)
Q Consensus        21 Ll~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~-------~~G~~~--a   91 (282)
                      +..+++.+.+.++...+. +.. .+|+++|-+.  .++ .++   .+-+..|=..|.+-+-..+       ..-...  -
T Consensus        13 ~~~~~e~~~~~~~~~~~~-Gf~-~~Kikvg~~~--D~~-~v~---~ir~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~   84 (244)
T d1wufa1          13 LQQNVETLLQLVNQYVDQ-GYE-RVKLKIAPNK--DIQ-FVE---AVRKSFPKLSLMADANSAYNREDFLLLKELDQYDL   84 (244)
T ss_dssp             CCSCHHHHHHHHHHHHHH-TCC-EEEEECBTTB--SHH-HHH---HHHTTCTTSEEEEECTTCCCGGGHHHHHTTGGGTC
T ss_pred             CCCCHHHHHHHHHHHHHC-CCC-EEEEEeCCcH--HHH-HHH---HHHHhccchhhhhhhhccccchhhhhhhcccccch
Confidence            456888887777777654 443 4677777543  232 222   2323445334444321110       000100  1


Q ss_pred             Cc--CCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHH-cCCCEEEec
Q 023442           92 EN--RTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALR-KGAHHVMVG  142 (282)
Q Consensus        92 d~--~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~-~g~DgVmIG  142 (282)
                      .|  ..+++-+++...++.+. .++||.+...+.++.++.++++ ..||.|++-
T Consensus        85 ~wiEeP~~~~d~~~~~~l~~~-~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d  137 (244)
T d1wufa1          85 EMIEQPFGTKDFVDHAWLQKQ-LKTRICLDENIRSVKDVEQAHSIGSCRAINLK  137 (244)
T ss_dssp             SEEECCSCSSCSHHHHHHHTT-CSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred             hhhcCcccccchhhhhccccc-cccccccCccccchhhhhhhccccccceeecc
Confidence            12  22344456667677654 6899999999999999999999 568988763

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=86.00  E-value=1.1  Score=37.25  Aligned_cols=73  Identities=11%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             HHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecH
Q 023442           64 IYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGR  143 (282)
Q Consensus        64 v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGR  143 (282)
                      +++..+ .|+++|.|..-..+++|.            ++.+..+.+ .+++||.--==|.++-++.+....|||+|.+=-
T Consensus        66 ~a~~ye-~GA~aiSVLTd~~~F~Gs------------~~~l~~vr~-~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~  131 (251)
T d1i4na_          66 FIRMYD-ELADAISILTEKHYFKGD------------PAFVRAARN-LTCRPILAKDFYIDTVQVKLASSVGADAILIIA  131 (251)
T ss_dssp             HHHHHH-HHCSEEEEECCCSSSCCC------------THHHHHHHT-TCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEG
T ss_pred             HHHHHh-cCCcceEEecccCCCCCC------------HHHHHHHhh-cccCchhhhhhhhCHHHHHHHHhhccceEEeec
Confidence            345554 699999999877677775            566666654 478999888889999999999999999998766


Q ss_pred             HhhhCCc
Q 023442          144 AAYQNPW  150 (282)
Q Consensus       144 gal~nP~  150 (282)
                      ++|.+..
T Consensus       132 ~~L~~~~  138 (251)
T d1i4na_         132 RILTAEQ  138 (251)
T ss_dssp             GGSCHHH
T ss_pred             ccccHHH
Confidence            6665443

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=86.00  E-value=1.4  Score=36.69  Aligned_cols=72  Identities=6%  Similarity=-0.020  Sum_probs=54.9

Q ss_pred             HHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           65 YKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        65 ~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      ++ ..+.|+++|.|..-..+++|.            ++.+..+.+ ..++||.--==|.++-++.+....|||+|.+=-+
T Consensus        74 a~-~~~~gA~aiSVLTe~~~F~Gs------------~~~l~~v~~-~~~~PiLrKDFIid~~QI~ear~~GADavLLI~~  139 (254)
T d1piia2          74 AA-IYKHYASAISVLTDEKYFQGS------------FNFLPIVSQ-IAPQPILCKDFIIDPYQIYLARYYQADACLLMLS  139 (254)
T ss_dssp             HH-HHTTTCSEEEEECCSTTTCCC------------TTHHHHHHH-HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETT
T ss_pred             HH-HHHhccCceEEecccccCCCC------------HHHHHHHHh-ccccccchhcccCcHHHHHHHHhhccchhhhhHh
Confidence            44 457899999999877777775            344545544 3689998888899999999999999999987666


Q ss_pred             hhhCCc
Q 023442          145 AYQNPW  150 (282)
Q Consensus       145 al~nP~  150 (282)
                      +|.+-.
T Consensus       140 ~L~~~~  145 (254)
T d1piia2         140 VLDDDQ  145 (254)
T ss_dssp             TCCHHH
T ss_pred             hhcccH
Confidence            664433

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.59  E-value=4.7  Score=33.68  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCC---cccCCCCcCCcCCCCCcc
Q 023442           25 PKFVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRK---ALLNGISPAENRTIPPLK  100 (282)
Q Consensus        25 p~~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt---~~~~G~~~ad~~~i~~~~  100 (282)
                      ++...+-++.++..+ ..++.+.+..|.+.    ++..+ +++.+++.|+|+|.++---   ....+.. ..... .+..
T Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~d~~~-~a~~~~~~gad~lelN~scPn~~~~~~~~-~~~~~-~~~~  158 (312)
T d1gtea2          86 AAYWCQSVTELKADFPDNIVIASIMCSYNK----NDWME-LSRKAEASGADALELNLSCPHGMGERGMG-LACGQ-DPEL  158 (312)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEEECCCSCH----HHHHH-HHHHHHHTTCSEEEEECCCBCCCC------SBGGG-CHHH
T ss_pred             hhhhhhhhccccccccccccccccccccch----hHHHH-HHHHhccCCCCeEeeccCCCCcccccccc-hhhhh-hHHH
Confidence            455555566666554 45666666555432    23333 3456788999999998321   1111110 00000 0111


Q ss_pred             HHH-HHHHHhcCCCceEE--EccCCCCHHHHHHHHH-cCCCEEEecH
Q 023442          101 YEY-YYALLRDFPDLTFT--LNGGINTVDEVNAALR-KGAHHVMVGR  143 (282)
Q Consensus       101 ~~~-i~~l~~~~~~ipVi--~nGdI~s~eda~~~l~-~g~DgVmIGR  143 (282)
                      +.. +..+ ++..++||+  ...++.+..++.+.+. .|+|+|.+.-
T Consensus       159 ~~~i~~~v-~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n  204 (312)
T d1gtea2         159 VRNICRWV-RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATN  204 (312)
T ss_dssp             HHHHHHHH-HHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECC
T ss_pred             HHHHHHHH-hhccCCceeecccccchhHHHHHHHHHHhcccceEEEe
Confidence            222 2333 334688987  4677888888777776 9999997753

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=85.23  E-value=4.4  Score=33.35  Aligned_cols=120  Identities=17%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      ++.||-.  +.-.|..|-...-..+.-.++++.+.+.+  ++||.+-+-  -   .+..+.++ .++.++++|++++.+.
T Consensus        34 ~~~Gv~g--l~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~--~---~s~~~~i~-~a~~a~~~Gad~ilv~  105 (292)
T d1xkya1          34 IDNGTTA--IVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG--S---NNTHASID-LTKKATEVGVDAVMLV  105 (292)
T ss_dssp             HHTTCCE--EEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC--C---SCHHHHHH-HHHHHHHTTCSEEEEE
T ss_pred             HHCCCCE--EEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC--c---ccHHHHHH-HHHHHHHcCCCEEEEC
Confidence            3456643  22223234333334554556666666554  578877542  2   23445555 3567889999999998


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-c-----cCCCCHHHHHHHHH-cCCCEE
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-N-----GGINTVDEVNAALR-KGAHHV  139 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~-n-----GdI~s~eda~~~l~-~g~DgV  139 (282)
                      ...  +...+..       .-++++.++.+. .++||+. |     |.-.+++.+.++.+ .++-|+
T Consensus       106 pP~--~~~~s~~-------~i~~~~~~v~~~-~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~gi  162 (292)
T d1xkya1         106 APY--YNKPSQE-------GMYQHFKAIAES-TPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAI  162 (292)
T ss_dssp             CCC--SSCCCHH-------HHHHHHHHHHHT-CSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred             CCC--CCCCCHH-------HHHHHHHHHhcc-CCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEE
Confidence            642  1111110       115566677664 4688764 3     55578888877665 444443

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.76  E-value=0.25  Score=41.37  Aligned_cols=39  Identities=21%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccch
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTL  153 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~  153 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.+ +|.-|.
T Consensus       204 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVG~ASl-~~~~F~  243 (251)
T d2btma_         204 AIRIQYGGSV-KPDNIRDFLAQQQIDGALVGGASL-EPASFL  243 (251)
T ss_dssp             TSEEEEESSC-CTTTHHHHHTSTTCCEEEESGGGS-SHHHHH
T ss_pred             cCcEEeeCCC-CHhHHHHHhcCCCCCEEEechHhC-CHHHHH
Confidence            6899999998 8899999998 8999999997665 555443

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=84.51  E-value=2.2  Score=35.26  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE-----ccC-CCCHHHHHHHHH-------
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL-----NGG-INTVDEVNAALR-------  133 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~-----nGd-I~s~eda~~~l~-------  133 (282)
                      .+++.|++.|.+-..- ...|.+|.         +..+..+++. .+|||..     .|| +.|.++...|.+       
T Consensus        15 ~A~~~GAdRIELc~~l-~~GGlTPS---------~g~i~~~~~~-~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~   83 (247)
T d1twda_          15 TAQQNGADRVELCAAP-KEGGLTPS---------LGVLKSVRQR-VTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRE   83 (247)
T ss_dssp             HHHHTTCSEEEECBCG-GGTCBCCC---------HHHHHHHHHH-CCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEcCCc-ccCCCCCC---------HHHHHHHHHh-cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4578999999996543 23566542         5666666654 5899865     455 558777776653       


Q ss_pred             cCCCEEEec
Q 023442          134 KGAHHVMVG  142 (282)
Q Consensus       134 ~g~DgVmIG  142 (282)
                      .|+|||.+|
T Consensus        84 ~G~dGvV~G   92 (247)
T d1twda_          84 LGFPGLVTG   92 (247)
T ss_dssp             TTCSEEEEC
T ss_pred             cCCCeEEEE
Confidence            699999998

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.42  E-value=1.8  Score=36.06  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             HHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH----cCCCEEE
Q 023442           66 KVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR----KGAHHVM  140 (282)
Q Consensus        66 ~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~----~g~DgVm  140 (282)
                      +.+.+.|++.|.+-|-+......+..+       +.+.+...++. ..++||++.-+=.|.+++.++.+    .|+|+||
T Consensus        35 ~~li~~Gv~Gi~v~G~tGE~~~Ls~eE-------r~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~  107 (296)
T d1xxxa1          35 NHLVDQGCDGLVVSGTTGESPTTTDGE-------KIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLL  107 (296)
T ss_dssp             HHHHHTTCSEEEESSTTTTTTTSCHHH-------HHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHcCCCEEEECeeccchhhCCHHH-------HHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEE
Confidence            344578999999988765433322111       11122222222 23588875444456666655543    7999999


Q ss_pred             ecHHhhhCCc
Q 023442          141 VGRAAYQNPW  150 (282)
Q Consensus       141 IGRgal~nP~  150 (282)
                      +.-..+..|.
T Consensus       108 i~~P~~~~~~  117 (296)
T d1xxxa1         108 VVTPYYSKPP  117 (296)
T ss_dssp             EECCCSSCCC
T ss_pred             EEeccCCCCC
Confidence            9977666553

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.19  E-value=1.7  Score=36.10  Aligned_cols=76  Identities=14%  Similarity=0.178  Sum_probs=45.0

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH----cCCCEEEe
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR----KGAHHVMV  141 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~----~g~DgVmI  141 (282)
                      .+.+.|++.|.+-|-|......+..+       +...+...++. ..++|||+.-+=.|.+++.++.+    .|+|+||+
T Consensus        30 ~l~~~Gv~Gi~v~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v  102 (295)
T d1o5ka_          30 YQLENGVNALIVLGTTGESPTVNEDE-------REKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV  102 (295)
T ss_dssp             HHHHTTCCEEEESSGGGTGGGCCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHcCCCEEEECeeccchhhCCHHH-------HHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEE
Confidence            34478999999988775433332211       12222222222 23688876655566666655553    79999999


Q ss_pred             cHHhhhCC
Q 023442          142 GRAAYQNP  149 (282)
Q Consensus       142 GRgal~nP  149 (282)
                      .=..+..|
T Consensus       103 ~pP~y~~~  110 (295)
T d1o5ka_         103 VTPYYNKP  110 (295)
T ss_dssp             ECCCSSCC
T ss_pred             eCCCCCCC
Confidence            86555544

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.08  E-value=3.5  Score=33.98  Aligned_cols=119  Identities=14%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             ccccCCchhhcccCcccc-cccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Q 023442            2 PSCGCPSPKVAGHGCFGV-SLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFII   78 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs-~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~V   78 (282)
                      ++.||.-=-+.  |..|- ..|..-+. .++++.+.+.+  ++||.+-+-  -.   +..+.++ +++.+++.|+|++.+
T Consensus        32 ~~~Gv~Gi~v~--GstGE~~~Ls~~Er-~~~~~~~~~~~~~~~~vi~gv~--~~---st~~ai~-~a~~A~~~Gad~v~v  102 (295)
T d1o5ka_          32 LENGVNALIVL--GTTGESPTVNEDER-EKLVSRTLEIVDGKIPVIVGAG--TN---STEKTLK-LVKQAEKLGANGVLV  102 (295)
T ss_dssp             HHTTCCEEEES--SGGGTGGGCCHHHH-HHHHHHHHHHHTTSSCEEEECC--CS---CHHHHHH-HHHHHHHHTCSEEEE
T ss_pred             HHcCCCEEEEC--eeccchhhCCHHHH-HHHhhhhccccccCCceEeecc--cc---cHHHHHH-HHHHHHHcCCCEEEE
Confidence            34566432222  22332 33444443 56677666655  578887542  22   2344444 466788999999999


Q ss_pred             ecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------ccCCCCHHHHHHHHH--cCCCEE
Q 023442           79 HSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR--KGAHHV  139 (282)
Q Consensus        79 H~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~------nGdI~s~eda~~~l~--~g~DgV  139 (282)
                      .+..  |...+..       .-++++.++++ .+++||+.      .|--.+++.+.++.+  ..+-++
T Consensus       103 ~pP~--y~~~s~~-------~i~~~~~~ia~-a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~~~ni~~i  161 (295)
T d1o5ka_         103 VTPY--YNKPTQE-------GLYQHYKYISE-RTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGI  161 (295)
T ss_dssp             ECCC--SSCCCHH-------HHHHHHHHHHT-TCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred             eCCC--CCCCCHH-------HHHHHHHHHHh-ccCCCeeEEeccchhcccchhHHHHHHHhhcccccce
Confidence            8752  1111111       11556666665 46788754      366779999988875  444444

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=83.59  E-value=1.6  Score=36.16  Aligned_cols=85  Identities=13%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH--
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR--  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~--  133 (282)
                      .+.+.+.+ +.+.+.|++.|.+-|-+....-.+..+       +...+..+.+. ..++||++.-+=.|.+++.++.+  
T Consensus        23 ~~~~~~~i-~~l~~~Gv~gl~~~G~tGE~~~Ls~~E-------r~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a   94 (292)
T d1xkya1          23 FAKTTKLV-NYLIDNGTTAIVVGGTTGESPTLTSEE-------KVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKA   94 (292)
T ss_dssp             HHHHHHHH-HHHHHTTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHCCCCEEEECeEccchhhCCHHH-------HHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHH
Confidence            44444443 344579999999988775433332211       12223333222 24688876555556666555443  


Q ss_pred             --cCCCEEEecHHhhhCC
Q 023442          134 --KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP  149 (282)
                        .|+|+||+.-..+..|
T Consensus        95 ~~~Gad~ilv~pP~~~~~  112 (292)
T d1xkya1          95 TEVGVDAVMLVAPYYNKP  112 (292)
T ss_dssp             HHTTCSEEEEECCCSSCC
T ss_pred             HHcCCCEEEECCCCCCCC
Confidence              7999999985554443

>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Vibrio marinus [TaxId: 90736]

Probab=83.49  E-value=0.32  Score=40.83  Aligned_cols=38  Identities=16%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus       205 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVG~ASl-~~~~F  243 (255)
T d1aw1a_         205 NVVIQYGGSV-KPENAAAYFAQPDIDGALVGGAAL-DAKSF  243 (255)
T ss_dssp             HCEEEECSCC-CTTTHHHHHTSTTCCEEEESGGGG-SHHHH
T ss_pred             cceEEEcCCC-CHhHHHHHhcCCCCCeEEechHhc-CHHHH
Confidence            5799998887 8899999998 8999999997766 44444

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=83.16  E-value=6  Score=28.03  Aligned_cols=65  Identities=11%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      +++...|.+.+.-.-....|             ++.+.++.+..+++|||.--+-.+.++..++++.|||+.      +.
T Consensus        40 l~~~~~dliilD~~mP~~~G-------------~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~y------l~  100 (119)
T d2pl1a1          40 LNEHIPDIAIVDLGLPDEDG-------------LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDY------VT  100 (119)
T ss_dssp             HHHSCCSEEEECSCCSSSCH-------------HHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEE------EE
T ss_pred             HHhcccceeehhccCCCchh-------------HHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEE------EE
Confidence            45566777777654322222             777778877667899988888889999999999999975      44


Q ss_pred             CCcc
Q 023442          148 NPWY  151 (282)
Q Consensus       148 nP~i  151 (282)
                      .|+-
T Consensus       101 KP~~  104 (119)
T d2pl1a1         101 KPFH  104 (119)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6753

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=82.43  E-value=0.37  Score=40.40  Aligned_cols=38  Identities=11%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccc
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYT  152 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if  152 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.+ +|.-|
T Consensus       204 ~v~iLYGGSV-~~~N~~~i~~~~~vdG~LVGgASl-~~~~F  242 (255)
T d1trea_         204 QVIIQYGGSV-NASNAAELFAQPDIDGALVGGASL-KADAF  242 (255)
T ss_dssp             HCEEEECSCC-CTTTHHHHHTSTTCCEEEESGGGG-CHHHH
T ss_pred             CccEEecCCc-CHhHHHHHhcCCCCCEEEechhhc-CHHHH
Confidence            5899999998 7888888998 8999999996554 55545

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.26  E-value=2.6  Score=34.89  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=52.7

Q ss_pred             HhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhh
Q 023442           69 SLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ  147 (282)
Q Consensus        69 e~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~  147 (282)
                      .+.|+++|.|=.-..+++|.            ++.+.++.+. .++||.-.==|.++-++.+....|||+|.+==+++.
T Consensus        72 ~~~gA~aiSVLTd~~~F~Gs------------~~dl~~v~~~-~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~  137 (247)
T d1a53a_          72 MERYAVGLSILTEEKYFNGS------------YETLRKIASS-VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILT  137 (247)
T ss_dssp             HTTTCSEEEEECCCTTTCCC------------HHHHHHHHHH-CCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSC
T ss_pred             HHhCCCeEEEecCccccccc------------hHHHHHHHhc-cccceeecccccChHHHHHHHHhhcchhhhhhhhcc
Confidence            46899999997655566674            6777666654 589999988899999999999999999977656653

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.25  E-value=7.2  Score=28.29  Aligned_cols=66  Identities=17%  Similarity=0.186  Sum_probs=47.3

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhh
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY  146 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal  146 (282)
                      .+.+...|.+.+.-.-....|             ++.+.++.+..+++|||.--+-.+.+.+.++++.||+..+.     
T Consensus        39 ~l~~~~~dlvilD~~mp~~~G-------------~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~-----  100 (137)
T d1ny5a1          39 LLSEKHFNVVLLDLLLPDVNG-------------LEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT-----  100 (137)
T ss_dssp             HHHHSCCSEEEEESBCSSSBH-------------HHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE-----
T ss_pred             HhhccccccchHHHhhhhhhH-------------HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe-----
Confidence            345677898888754322122             67777777667889998766668899999999999997654     


Q ss_pred             hCCcc
Q 023442          147 QNPWY  151 (282)
Q Consensus       147 ~nP~i  151 (282)
                       .|+-
T Consensus       101 -KP~~  104 (137)
T d1ny5a1         101 -KPCM  104 (137)
T ss_dssp             -ESCC
T ss_pred             -CCCC
Confidence             6764

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=82.01  E-value=0.42  Score=42.08  Aligned_cols=65  Identities=14%  Similarity=0.106  Sum_probs=43.8

Q ss_pred             HHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcC-CCceEEEccCCCCHHHHHHHHHcCCCEEEecHH
Q 023442           67 VSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDF-PDLTFTLNGGINTVDEVNAALRKGAHHVMVGRA  144 (282)
Q Consensus        67 ~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~-~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRg  144 (282)
                      .+.++|++.|.+....    |.+..        -.+.+..+.+.. +++||+ .|+|-|++.++.+++.|+|+|-+|=|
T Consensus       117 ~L~~ag~d~i~IDvAh----G~~~~--------v~~~i~~ir~~~~~~~~Ii-AGNVaT~e~~~~L~~aGaD~vkVGIG  182 (362)
T d1pvna1         117 ALVEAGADVLCIDSSD----GFSEW--------QKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIKIGIG  182 (362)
T ss_dssp             HHHHHTCSEEEECCSC----CCBHH--------HHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHhhcCceEEeechhc----cchhH--------HHHHHHHHHHhhccceeee-cccccCHHHHHHHHHhCCcEEEeccc
Confidence            4567899999986532    21100        023344443333 457665 58999999999999999999999954

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=81.98  E-value=1.6  Score=34.84  Aligned_cols=105  Identities=14%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhhcC-CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccH----
Q 023442           27 FVGEAMSVIAANT-NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKY----  101 (282)
Q Consensus        27 ~~~eiv~~v~~~~-~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~----  101 (282)
                      .+.+..+.+...+ ++||.+.+= |++...++..+    .+.++++|+..|.+-.+.....|..-..-.. ..+.+    
T Consensus        72 ~~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rt----v~~~~~aG~agI~~~pk~g~~~g~~~~~~e~-a~~~~~~~~  145 (197)
T d2p10a1          72 IVVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTF----LRELKEIGFAGVQNFPTVGLIDGLFRQNLEE-TGMSYAQEV  145 (197)
T ss_dssp             HHHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHH----HHHHHHHTCCEEEECSCGGGCCHHHHHHHHH-TTCCHHHHH
T ss_pred             HHHHHHHHHHHhcccCceEEecC-CCCcchhHHHH----HHHHHHcCCeEEeccccccCccchhhhhHHH-HHHHhccCc
Confidence            3445566666555 799999996 88876665443    3456899999998766543222210000000 00011    


Q ss_pred             HHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          102 EYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       102 ~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      +.+ -+++. -.+  +..|=-.+.+.++.+.+.|||.|++
T Consensus       146 d~l-iiARt-da~--~~~g~~~Ai~Ra~ay~eAGAD~i~~  181 (197)
T d2p10a1         146 EMI-AEAHK-LDL--LTTPYVFSPEDAVAMAKAGADILVC  181 (197)
T ss_dssp             HHH-HHHHH-TTC--EECCEECSHHHHHHHHHHTCSEEEE
T ss_pred             cHH-HHHHH-hhh--hhccHHHHHHHHHHHHHcCCCEEEE
Confidence            111 12221 122  2356668999999999999999987

>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.65  E-value=0.19  Score=42.14  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=33.7

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.++++ .++||+.||++.| +|. |..
T Consensus       202 ~i~iLYGGSV-~~~N~~~i~~~~~iDG~LVGgASL-~~e-F~~  241 (247)
T d1neya_         202 ELRILYGGSA-NGSNAVTFKDKADVDGFLVGGASL-KPE-FVD  241 (247)
T ss_dssp             HCCEEEESSC-CTTTGGGGTTCTTCCEEEESGGGG-STH-HHH
T ss_pred             cCcEEEeCCC-CHHHHHHHhcCCCCCeEEeehHhC-ChH-HHH
Confidence            5899999998 8899999998 8999999999998 588 643

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.01  E-value=1  Score=39.49  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             HHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEec
Q 023442           68 SSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVG  142 (282)
Q Consensus        68 le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIG  142 (282)
                      +.++|+|.|.|+.-.    |.+..        ..+.+++++..+ ++|||+ |+|.|++-+..+  .|||+|-+|
T Consensus       124 l~~aGvd~ivID~A~----Gh~~~--------~i~~lK~ir~~~-~~~vIa-GNVaT~e~~~~l--~gaD~VkVG  182 (368)
T d2cu0a1         124 LDKAGVDVIVVDTAH----AHNLK--------AIKSMKEMRQKV-DADFIV-GNIANPKAVDDL--TFADAVKVG  182 (368)
T ss_dssp             HHHTTCSEEEEECSC----CCCHH--------HHHHHHHHHHTC-CSEEEE-EEECCHHHHTTC--TTSSEEEEC
T ss_pred             HHHcCCCEEEecCcc----cchhh--------hhhhhhhhhhhc-ccceee-ccccCHHHHHhh--hcCcceeec
Confidence            457999999998642    32110        134456666654 689887 999999987432  689999887

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=80.98  E-value=5.5  Score=29.13  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             HHHHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEe
Q 023442          101 YEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMV  141 (282)
Q Consensus       101 ~~~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmI  141 (282)
                      ++.+.++.+..+++|||.--+-.+.+++.++++.||+..+.
T Consensus        60 ~el~~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~dyl~  100 (140)
T d1qkka_          60 LALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIA  100 (140)
T ss_dssp             HHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCCEeec
Confidence            67777777767899998877778999999999999996654

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=3.1  Score=34.41  Aligned_cols=123  Identities=12%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             ccccCCchhhcccCcccccccCCHHHHHHHHHHHhhcC--CccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Q 023442            2 PSCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANT--NVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIH   79 (282)
Q Consensus         2 lN~GCP~~~v~~~g~yGs~Ll~~p~~~~eiv~~v~~~~--~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH   79 (282)
                      +..||-.  +.=.|..|-...-..+.-.++++.+.+.+  ++|+.+-+-    . .+..+..+ .++.+++.|++++.+.
T Consensus        33 ~~~Gv~g--i~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~----~-~s~~~~i~-~a~~a~~~Gad~~~v~  104 (295)
T d1hl2a_          33 IQQGIDG--LYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG----C-VSTAESQQ-LAASAKRYGFDAVSAV  104 (295)
T ss_dssp             HHHTCSE--EEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC----C-SSHHHHHH-HHHHHHHHTCSEEEEE
T ss_pred             HHcCCCE--EEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccc----c-chhhHHHH-HHHHHHhcCCceeeee
Confidence            3456643  22223345444445555567777776655  578877542    2 23444444 4677889999999998


Q ss_pred             cCCcccCCCCcCCcCCCCCccHHHHHHHHhcCCCceEEE------ccCCCCHHHHHHHHH-cCCCEEEe
Q 023442           80 SRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTL------NGGINTVDEVNAALR-KGAHHVMV  141 (282)
Q Consensus        80 ~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~~~~ipVi~------nGdI~s~eda~~~l~-~g~DgVmI  141 (282)
                      +.... . .+..+       -++++.+++...+++|++.      .|--.+++.+.++.+ ..+-|+=.
T Consensus       105 ~p~~~-~-~~~~~-------~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgiK~  164 (295)
T d1hl2a_         105 TPFYY-P-FSFEE-------HCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALKQ  164 (295)
T ss_dssp             CCCSS-C-CCHHH-------HHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEE
T ss_pred             ecccc-C-CChHH-------HHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhhcc
Confidence            75321 1 11100       1344455555555667653      344457777777765 44444433

>d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.18  E-value=0.37  Score=40.34  Aligned_cols=39  Identities=18%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             CceEEEccCCCCHHHHHHHHH-cCCCEEEecHHhhhCCccchh
Q 023442          113 DLTFTLNGGINTVDEVNAALR-KGAHHVMVGRAAYQNPWYTLG  154 (282)
Q Consensus       113 ~ipVi~nGdI~s~eda~~~l~-~g~DgVmIGRgal~nP~if~~  154 (282)
                      ++||++.|.| +++.+.+++. .++||+.||++.|. |. |..
T Consensus       205 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL~-~~-F~~  244 (252)
T d1b9ba_         205 SIRILYGGSI-KPDNFLGLIVQKDIDGGLVGGASLK-ES-FIE  244 (252)
T ss_dssp             HSEEEEESSC-CHHHHTTTSSSTTCCEEEESGGGTS-TH-HHH
T ss_pred             cccEEEcCCC-CHHHHHHHhcCCCCCEEEeechhCC-HH-HHH
Confidence            4899999998 8999999998 89999999999995 76 643

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.13  E-value=5.2  Score=29.01  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHhhcCCccEEEEecCCCCCCCcHHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHH
Q 023442           23 LDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYE  102 (282)
Q Consensus        23 ~~p~~~~eiv~~v~~~~~ipvsvKiR~G~d~~~~~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~  102 (282)
                      .|-....++++.+-+..+.-|..     ..+.   .+..    .++.....|.|.+.-.-....|             ++
T Consensus        15 DD~~~~~~~l~~~L~~~g~~v~~-----a~~g---~ea~----~~~~~~~~dlillD~~mP~~dG-------------~e   69 (133)
T d2ayxa1          15 DDHPINRRLLADQLGSLGYQCKT-----ANDG---VDAL----NVLSKNHIDIVLSDVNMPNMDG-------------YR   69 (133)
T ss_dssp             ESSHHHHHHHHHHHHHHTSEEEE-----ECCS---HHHH----HHHHHSCCSEEEEEESSCSSCC-------------HH
T ss_pred             ECCHHHHHHHHHHHHHcCCEEEE-----ECcH---HHHH----HHHhccCceEEEEeccCCCCCH-------------HH
Confidence            45555666666666555554432     1111   2222    2345667888888765432233             67


Q ss_pred             HHHHHHhcCCCceEEEccCCCCHHHHHHHHHcCCCEEEecHHhhhCCcc
Q 023442          103 YYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQNPWY  151 (282)
Q Consensus       103 ~i~~l~~~~~~ipVi~nGdI~s~eda~~~l~~g~DgVmIGRgal~nP~i  151 (282)
                      .+.++.+..+.+||+.--+-.+.++..++++.|++++      +..|+-
T Consensus        70 l~~~ir~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~------l~KP~~  112 (133)
T d2ayxa1          70 LTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC------LSKPVT  112 (133)
T ss_dssp             HHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEE------EESSCC
T ss_pred             HHHHHHHhCCCCCEEEEeccCCHHHHHHHHHcCCCEE------EECCCC
Confidence            7777766556789887766778889999999999875      557753

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=80.10  E-value=2.1  Score=35.56  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhCCCCEEEEecCCcccCCCCcCCcCCCCCccHHHHHHHHhc-CCCceEEEccCCCCHHHHHHHHH--
Q 023442           57 YNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRD-FPDLTFTLNGGINTVDEVNAALR--  133 (282)
Q Consensus        57 ~~e~~~~v~~~le~~Gv~~i~VH~Rt~~~~G~~~ad~~~i~~~~~~~i~~l~~~-~~~ipVi~nGdI~s~eda~~~l~--  133 (282)
                      .+.+.+.+. .+.+.|++.|.+-|-+......+..+       +.+.+...++. ...+||++..+=.|.+++.++.+  
T Consensus        21 ~~~~~~~i~-~l~~~Gv~Gl~~~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a   92 (292)
T d2a6na1          21 RASLKKLID-YHVASGTSAIVSVGTTGESATLNHDE-------HADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRF   92 (292)
T ss_dssp             HHHHHHHHH-HHHHHTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHH-HHHHcCCCEEEECeeccchhhCCHHH-------HHHHhhhhhhhccccceeEeecccchHHHHHHHhccH
Confidence            334444333 44568999999998765432222111       11222223322 24689888777778888877775  


Q ss_pred             --cCCCEEEecHHhhhCC
Q 023442          134 --KGAHHVMVGRAAYQNP  149 (282)
Q Consensus       134 --~g~DgVmIGRgal~nP  149 (282)
                        .|+|++|+.-..+..|
T Consensus        93 ~~~Gad~~~~~pP~~~~~  110 (292)
T d2a6na1          93 NDSGIVGCLTVTPYYNRP  110 (292)
T ss_dssp             TTSSCCEEEEECCCSSCC
T ss_pred             HhcCCcceeccCCCCCCC
Confidence              6999999986555443