Citrus Sinensis ID: 023444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
cccccccEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
cEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHHEccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHcc
mkdpsgafrmhdageiDVRACYTAISVASILNILDDELLQNVGNYILSCqtyeggiagepgseahggytfCGLAAMILINEADRLDLDALIGWVVFRqgveggfqgrtnkLVDGCYSFWQGGVFALLRRFHsiigesptpvdqrgaecsidntqtttasdvsegdgssdeissqgdehchfqhrereplfHSIALQRYLLLCsqdprgglrdklrkprdyyhtcyclsglsicqhswlkdedssplpravlgpysnvlepvhpVFNIVLDRYHEaheffsrs
mkdpsgafrmhdaGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGesptpvdqrgaecsidntqtttasdvsegdgSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAsdvsegdgssdeissqgdeHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
***********DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG***************************************************EPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDED**PLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF****
MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG***GRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR*
********RMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT**************************HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
****SGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q04903419 Protein farnesyltransfera N/A no 0.957 0.644 0.647 1e-107
Q38920482 Protein farnesyltransfera yes no 1.0 0.585 0.606 4e-93
P49356437 Protein farnesyltransfera yes no 0.819 0.528 0.442 2e-58
Q02293437 Protein farnesyltransfera yes no 0.819 0.528 0.442 3e-58
P49355437 Protein farnesyltransfera yes no 0.819 0.528 0.442 5e-58
Q8K2I1437 Protein farnesyltransfera yes no 0.819 0.528 0.439 9e-58
Q55D51500 Protein farnesyltransfera yes no 0.794 0.448 0.372 1e-45
P22007431 Protein farnesyltransfera yes no 0.794 0.519 0.339 4e-36
O13782382 Protein farnesyltransfera yes no 0.652 0.481 0.388 2e-35
O93830341 Geranylgeranyl transferas N/A no 0.446 0.369 0.381 4e-20
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1 Back     alignment and function desciption
 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/301 (64%), Positives = 223/301 (74%), Gaps = 31/301 (10%)

Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           MK P+G FRMHD GEIDVRACYTAISVAS+LNILDDEL++NVG++ILSCQTYEGG+AGEP
Sbjct: 129 MKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEP 188

Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
           GSEAHGGYTFCGLAAMILI E +RLDL  L+ WVVFRQG E GFQGRTNKLVDGCYSFWQ
Sbjct: 189 GSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQ 248

Query: 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCH 180
           GG  ALL+R HSII       D++ AE S    Q  T SD  E     D  SS    H  
Sbjct: 249 GGAVALLQRLHSII-------DEQMAEAS----QFVTVSDAPEEKECLDGTSSHATSHIR 297

Query: 181 F--------------------QHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDY 220
                                + R+ EPLFHSIALQ+Y+LLCSQ+  GGLRDK  K RD+
Sbjct: 298 HEGMNESCSSDVKNIGYNFISEWRQSEPLFHSIALQQYILLCSQEQDGGLRDKPGKRRDH 357

Query: 221 YHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFS 280
           YH+CYCLSGLS+CQ+SW K  DS PLP+ V+GPYSN+LEP+HP+FN+VLDRY EAHEFFS
Sbjct: 358 YHSCYCLSGLSLCQYSWSKRPDSPPLPKVVMGPYSNLLEPIHPLFNVVLDRYREAHEFFS 417

Query: 281 R 281
           +
Sbjct: 418 Q 418
Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 8
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 Back     alignment and function description
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 Back     alignment and function description
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 Back     alignment and function description
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 Back     alignment and function description
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 Back     alignment and function description
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 Back     alignment and function description
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
225452468 438 PREDICTED: protein farnesyltransferase s 0.992 0.639 0.688 1e-109
296087672 421 unnamed protein product [Vitis vinifera] 0.992 0.665 0.688 1e-109
255552586 438 protein farnesyltransferase beta subunit 0.960 0.618 0.697 1e-108
417482 419 RecName: Full=Protein farnesyltransferas 0.957 0.644 0.647 1e-105
356548601 455 PREDICTED: protein farnesyltransferase s 0.985 0.610 0.660 1e-103
356516702 455 PREDICTED: protein farnesyltransferase s 0.943 0.584 0.641 1e-103
449446662 428 PREDICTED: protein farnesyltransferase s 0.950 0.626 0.659 7e-98
449489564361 PREDICTED: protein farnesyltransferase s 0.950 0.742 0.659 2e-97
326497671 455 predicted protein [Hordeum vulgare subsp 0.985 0.610 0.607 2e-96
114437177 455 farnesyltransferase beta subunit [Tritic 0.985 0.610 0.610 9e-95
>gi|225452468|ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subunit beta-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/286 (68%), Positives = 228/286 (79%), Gaps = 6/286 (2%)

Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           MKDPSGAFRMHDAGE+DVRACYTAISVAS+L ILDDEL++ VGN+ILSCQTYEGGI+GEP
Sbjct: 155 MKDPSGAFRMHDAGEMDVRACYTAISVASVLTILDDELVKGVGNFILSCQTYEGGISGEP 214

Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
           GSEAHGGYTFCGLA M+LI E +RLDL +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQ
Sbjct: 215 GSEAHGGYTFCGLATMVLIGEVNRLDLTSLIDWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 274

Query: 121 GGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCH 180
           GGVFAL+++ HSII E    +D  G+  +ID+ Q  + S  S   G  D   S    +  
Sbjct: 275 GGVFALIQKLHSIIEEQLRLLDAGGS--AIDSPQLASISCHSGKRGLHDTSGSAKFSNIG 332

Query: 181 F----QHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236
           F    +  E EPLFHSIALQ+Y++LCSQ   GG RDK  K RDYYHTCYCLSGLS+ Q+S
Sbjct: 333 FNFLKEPAEMEPLFHSIALQQYIILCSQLQEGGFRDKPGKHRDYYHTCYCLSGLSVAQYS 392

Query: 237 WLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 282
           + KD DS PLPRAV GPYSN+LEP+HP++N++LD YHEAHEFFS S
Sbjct: 393 YSKDADSPPLPRAVFGPYSNLLEPIHPLYNVILDLYHEAHEFFSTS 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296087672|emb|CBI34928.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552586|ref|XP_002517336.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] gi|223543347|gb|EEF44878.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|417482|sp|Q04903.1|FNTB_PEA RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta gi|169049|gb|AAA33649.1| farnesyl-protein transferase beta-subunit [Pisum sativum] Back     alignment and taxonomy information
>gi|356548601|ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subunit beta [Glycine max] Back     alignment and taxonomy information
>gi|356516702|ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|449446662|ref|XP_004141090.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449489564|ref|XP_004158349.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|326497671|dbj|BAK05925.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|114437177|gb|ABI74692.1| farnesyltransferase beta subunit [Triticum aestivum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2173802482 ERA1 "ENHANCED RESPONSE TO ABA 1.0 0.585 0.586 3.7e-87
UNIPROTKB|P49355437 FNTB "Protein farnesyltransfer 0.457 0.295 0.569 4.8e-60
UNIPROTKB|B4DL54471 CHURC1-FNTB "cDNA FLJ59570, hi 0.457 0.273 0.561 1.6e-59
UNIPROTKB|B4E1A0391 CHURC1-FNTB "cDNA FLJ58825, hi 0.457 0.329 0.561 1.6e-59
UNIPROTKB|H0YHI0472 CHURC1-FNTB "Protein CHURC1-FN 0.457 0.273 0.561 1.6e-59
UNIPROTKB|P49356437 FNTB "Protein farnesyltransfer 0.457 0.295 0.561 1.6e-59
RGD|620119437 Fntb "farnesyltransferase, CAA 0.457 0.295 0.561 2e-59
UNIPROTKB|Q02293437 Fntb "Protein farnesyltransfer 0.457 0.295 0.561 2e-59
ZFIN|ZDB-GENE-030131-2220419 fntb "farnesyltransferase, CAA 0.457 0.307 0.576 4.2e-59
UNIPROTKB|F1Q0W7437 FNTB "Uncharacterized protein" 0.457 0.295 0.561 5.4e-59
TAIR|locus:2173802 ERA1 "ENHANCED RESPONSE TO ABA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 170/290 (58%), Positives = 206/290 (71%)

Query:     1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
             MKD SG FRMHD GE+DVRACYTAISVASILNI+DDEL Q +G+YILSCQTYEGGI GEP
Sbjct:   192 MKDTSGGFRMHDMGEMDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEP 251

Query:    61 GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
             GSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V RQGVE GFQGRTNKLVDGCY+FWQ
Sbjct:   252 GSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYTFWQ 311

Query:   121 GGVFALLRRF-----HSIIGESPTP--VDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXX 173
                  LL+R      H + G S      ++       D+ + +                 
Sbjct:   312 AAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAHDEDDLEDSDDDDDSDEDNDEDSVNG 371

Query:   174 XXXXHCH-FQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSI 232
                 H   + +R  + +F S+ LQRY+LLCS+ P GG RDK RKPRD+YHTCYCLSGLS+
Sbjct:   372 HRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKIPDGGFRDKPRKPRDFYHTCYCLSGLSV 431

Query:   233 CQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 282
              QH+WLKDED+ PL R ++G YSN+LEPV  + NIV+D+Y+EA EFF ++
Sbjct:   432 AQHAWLKDEDTPPLTRDIMGGYSNLLEPVQLLHNIVMDQYNEAIEFFFKA 481
GO:0003824 "catalytic activity" evidence=IEA
GO:0004660 "protein farnesyltransferase activity" evidence=IMP
GO:0005965 "protein farnesyltransferase complex" evidence=IMP
GO:0018342 "protein prenylation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0004311 "farnesyltranstransferase activity" evidence=ISS
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009934 "regulation of meristem structural organization" evidence=IMP
UNIPROTKB|P49355 FNTB "Protein farnesyltransferase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DL54 CHURC1-FNTB "cDNA FLJ59570, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4E1A0 CHURC1-FNTB "cDNA FLJ58825, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YHI0 CHURC1-FNTB "Protein CHURC1-FNTB" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49356 FNTB "Protein farnesyltransferase subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620119 Fntb "farnesyltransferase, CAAX box, beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q02293 Fntb "Protein farnesyltransferase subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2220 fntb "farnesyltransferase, CAAX box, beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0W7 FNTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.10.921
4th Layer2.5.1.580.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020744001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (439 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001930001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (331 aa)
   •• • 0.864

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 1e-168
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 1e-105
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 4e-75
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 5e-50
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 3e-34
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 4e-30
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 3e-27
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 1e-23
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 1e-15
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-10
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-08
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 9e-08
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-07
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 5e-06
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 7e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 8e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 9e-05
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 2e-04
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 5e-04
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 0.002
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 0.002
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information 
 Score =  473 bits (1218), Expect = e-168
 Identities = 194/286 (67%), Positives = 226/286 (79%), Gaps = 6/286 (2%)

Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           MKDPSG FRMHD GE+DVRACYTAISVAS+LNILDDEL++ VG+YILSCQTYEGGI GEP
Sbjct: 155 MKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEP 214

Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 120
           G+EAHGGYTFCGLAAMILINE DRLDL +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQ
Sbjct: 215 GAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQ 274

Query: 121 GGVFALLRRFHSIIGE----SPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGD 176
           GGVFALL++  +I+ E      + +     E   D  +T+++     GD  S + S  G 
Sbjct: 275 GGVFALLQQLVTIVDEQLQTGGSSIMFEELED--DACETSSSGKDDAGDTDSADYSKVGF 332

Query: 177 EHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHS 236
           +     +++  PLFHSIALQ+Y+LLCSQ   GGLRDK  K RDYYHTCYCLSGLS+ Q+S
Sbjct: 333 DFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYS 392

Query: 237 WLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS 282
             KDEDS PLPR VLGPYSN+LEP+HP++N+VLD+YHEA EFFS  
Sbjct: 393 ASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLDKYHEAIEFFSSK 438

Length = 439
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
PLN02710439 farnesyltranstransferase subunit beta 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.89
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.74
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.72
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.7
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.43
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.42
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.42
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.34
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.29
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.2
COG1689274 Uncharacterized protein conserved in archaea [Func 99.2
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.17
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.15
COG1689274 Uncharacterized protein conserved in archaea [Func 99.05
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.02
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.01
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 98.93
PLN02993763 lupeol synthase 98.9
PLN02993763 lupeol synthase 98.9
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 98.9
PLN03012759 Camelliol C synthase 98.81
PLN03012759 Camelliol C synthase 98.8
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.62
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.47
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 98.39
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 98.3
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.26
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 97.95
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 97.92
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 97.9
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.6
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 97.35
PF07678246 A2M_comp: A-macroglobulin complement component; In 96.75
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 94.57
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 90.77
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 90.12
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 90.09
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information 
Probab=100.00  E-value=5.7e-63  Score=474.88  Aligned_cols=270  Identities=70%  Similarity=1.176  Sum_probs=224.7

Q ss_pred             CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444            1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN   80 (282)
Q Consensus         1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg   80 (282)
                      +|++||||.+.+++|+|+|+||||++++.||+.+++++.+++++||.+||++||||++.|+.|+|+++|||||++|+|||
T Consensus       155 ~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg  234 (439)
T PLN02710        155 MKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILIN  234 (439)
T ss_pred             cCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcC
Confidence            58999999999999999999999999999999999899999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHcCCCCcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCc-------c-c--ccCccccC
Q 023444           81 EADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTP-------V-D--QRGAECSI  150 (282)
Q Consensus        81 ~~~~id~~~~~~wl~~~Q~~dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~-------~-i--~~c~~~~~  150 (282)
                      +++.+|.+++++||.+||..+|||+|||||++|+|||||++++|+||+++..++.+++..       . .  ..|.+  .
T Consensus       235 ~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  312 (439)
T PLN02710        235 EVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACET--S  312 (439)
T ss_pred             CccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccc--c
Confidence            999999999999999999999999999999999999999999999999886654332200       0 0  00110  0


Q ss_pred             CCCccccCCCCCCCCCCCCccccccccccccccc---cCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHH
Q 023444          151 DNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHR---EREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCL  227 (282)
Q Consensus       151 dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~---~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~l  227 (282)
                      .-++.         ......+..+...+..|+..   ...+++|.++|++|||.|+|.+.|||++||+|.||.|||||+|
T Consensus       313 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~L  383 (439)
T PLN02710        313 SSGKD---------DAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCL  383 (439)
T ss_pred             ccccc---------cccccccccccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHH
Confidence            00000         00000000112222233221   2346899999999999999999999999999999999999999


Q ss_pred             HhHHhhccCCCCCCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444          228 SGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  281 (282)
Q Consensus       228 a~Lsll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~  281 (282)
                      |+||++||.+..+.++++....|+++++|.|+||||+|||+.+++.++++||+.
T Consensus       384 sGLSl~q~~~~~~~~~~~~~~~~~g~~~n~l~~~~p~~ni~~~~~~~~~~~f~~  437 (439)
T PLN02710        384 SGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIHPLYNVVLDKYHEAIEFFSS  437 (439)
T ss_pred             HHHHHHhhcccccCCCCCccccccCCCccccCCCCCccCCCHHHHHHHHHHHhh
Confidence            999999999887777777666799999999999999999999999999999985

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 1e-57
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 1e-57
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 1e-57
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 1e-57
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 2e-57
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 2e-57
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 2e-57
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 2e-57
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 2e-57
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 2e-57
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 2e-57
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 3e-57
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 3e-57
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 2e-33
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 4e-17
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 4e-17
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 2e-16
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 4e-08
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/280 (43%), Positives = 151/280 (53%), Gaps = 49/280 (17%)
Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           +K P G+F MH  GE+DVR+ Y A SVAS+ NI+  +L +    +I  CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243
Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
           G EAHGGYTFCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303
Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAXXXXXXXXXXXXXXXXXXXHC 179
           Q G+  LL R     G+    +                                      
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMSHW----------------------------------- 328
Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
                    +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH    
Sbjct: 329 ---------MFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHF--- 376
Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFF 279
               + L   VLG   N L+P HPV+NI  D+  +A  +F
Sbjct: 377 -GSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYF 415
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 1e-74
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 6e-14
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 2e-68
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 1e-08
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-57
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 7e-45
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 2e-07
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 2e-44
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
 Score =  233 bits (596), Expect = 1e-74
 Identities = 120/282 (42%), Positives = 150/282 (53%), Gaps = 49/282 (17%)

Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           +K P G+F MH  GE+DVR+ Y A SVAS+ NI+  +L +    +I  CQ +EGGI G P
Sbjct: 184 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 243

Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFW 119
           G EAHGGYTFCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFW
Sbjct: 244 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 303

Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
           Q G+  LL R     G+    +                                      
Sbjct: 304 QAGLLPLLHRALHAQGDPALSMS------------------------------------- 326

Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
                    +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH    
Sbjct: 327 -------HWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSG 379

Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281
                     VLG   N L+P HPV+NI  D+  +A  +F +
Sbjct: 380 AMLHDV----VLGVPENALQPTHPVYNIGPDKVIQATTYFLQ 417
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.53
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.39
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.38
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.37
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.95
2wy7_A310 Complement C3D fragment; immune system, immune res 98.86
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.51
2wy7_A310 Complement C3D fragment; immune system, immune res 98.39
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.29
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 98.01
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 97.68
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.62
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 96.98
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 96.86
2hr0_B 915 Complement C3 alpha' chain; complement component C 96.71
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 96.67
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 95.75
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 95.72
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 95.49
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 95.45
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 95.22
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 94.82
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 93.94
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 93.07
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 92.92
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 92.47
3prx_B 1642 Cobra venom factor; immune system, complement, imm 91.48
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 90.64
3prx_B 1642 Cobra venom factor; immune system, complement, imm 90.0
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 86.59
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 85.86
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
Probab=100.00  E-value=2.4e-57  Score=441.86  Aligned_cols=248  Identities=39%  Similarity=0.685  Sum_probs=202.4

Q ss_pred             CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccC----------------------
Q 023444            1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG----------------------   58 (282)
Q Consensus         1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~----------------------   58 (282)
                      +|++||||.+..+||.|+|+||||++++.+|+.+++++.+++++||++||++||||+.                      
T Consensus       179 lQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~  258 (520)
T 3q7a_B          179 CKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSC  258 (520)
T ss_dssp             HBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSE
T ss_pred             HhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccccc
Confidence            5899999999999999999999999999999999999999999999999999999999                      


Q ss_pred             -CCCCCCchhHHHHHHHHHHHhccC------CcccHHHHHHHHHHcCC---CCcccccccCCCCCchhhhHHHHHHHHhh
Q 023444           59 -EPGSEAHGGYTFCGLAAMILINEA------DRLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFALLR  128 (282)
Q Consensus        59 -~p~~esh~~~TycAl~~L~lLg~~------~~id~~~~~~wl~~~Q~---~dGGF~gr~~~e~D~~ysy~a~a~l~lL~  128 (282)
                       .|+.|||+++|||||++|+||+.+      +.+|++++++||.+||.   ++|||+||+||++|+|||||++++|.||+
T Consensus       259 ~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~  338 (520)
T 3q7a_B          259 RVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAE  338 (520)
T ss_dssp             EEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHH
T ss_pred             CCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHH
Confidence             689999999999999999999986      46899999999999997   46999999999999999999999999999


Q ss_pred             hhhcc-------cCCCCCcccccCccccCCCCccccCCCCCCCCCCCCcccccccccccccc-ccCCcccCHHHHHHHHH
Q 023444          129 RFHSI-------IGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQH-REREPLFHSIALQRYLL  200 (282)
Q Consensus       129 ~~~~i-------~~~~~~~~i~~c~~~~~dGg~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~-~~~~~l~~~~~l~~~iL  200 (282)
                      ++...       ..+...  ...+.    ++-                           +.. .....++|+++|++|||
T Consensus       339 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~---------------------------w~~~~~~~~l~d~~~L~~yIL  385 (520)
T 3q7a_B          339 ELVRREKSRKVKKSRIEV--FEEEK----EGD---------------------------WEDVPPIPPIFNRVALQEFTL  385 (520)
T ss_dssp             HHHHHHHHHHC------------------------------------------------------CCCSSCHHHHHHHHH
T ss_pred             HHhhcccccccccccccc--ccccc----ccc---------------------------cccccccccccCHHHHHHHHH
Confidence            86110       000000  00000    000                           000 00125799999999999


Q ss_pred             HhcCCCC---CCCCCCCCCCCCchhhhHHHHhHHhhccCCCCCCC----------C----C-------CC----------
Q 023444          201 LCSQDPR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDED----------S----S-------PL----------  246 (282)
Q Consensus       201 ~~~Q~~~---GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~~~~----------~----~-------~~----------  246 (282)
                      .|+|.+.   |||++||+|.||+|||||+||+||++||.+..+.+          .    |       +.          
T Consensus       386 ~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (520)
T 3q7a_B          386 VAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQN  465 (520)
T ss_dssp             HTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHHHHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHH
T ss_pred             HHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChhhHHHhhhccccccccccccccccccccccchhhHH
Confidence            8889887   99999999999999999999999999987532110          1    0       00          


Q ss_pred             -----------------CccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444          247 -----------------PRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  281 (282)
Q Consensus       247 -----------------~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~  281 (282)
                                       ...|.+...|+|+++||||||+..++++|.+||..
T Consensus       466 ~~~~~~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~f~~  517 (520)
T 3q7a_B          466 ARREIWANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINYFYC  517 (520)
T ss_dssp             HHHHHHHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHHHhh
Confidence                             01345666899999999999999999999999964
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 3e-82
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 7e-13
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 2e-52
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 1e-14
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 2e-47
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  251 bits (641), Expect = 3e-82
 Identities = 121/282 (42%), Positives = 152/282 (53%), Gaps = 49/282 (17%)

Query: 1   MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEP 60
           +K P G+F MH  GE+DVR+ Y A SVAS+ NI+  +L +    +I  CQ +EGGI G P
Sbjct: 164 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVP 223

Query: 61  GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFW 119
           G EAHGGYTFCGLAA++++     L+L +L+ WV  RQ   EGGFQGR NKLVDGCYSFW
Sbjct: 224 GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFW 283

Query: 120 QGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHC 179
           Q G+  LL R     G+    +                                      
Sbjct: 284 QAGLLPLLHRALHAQGDPALSMSH------------------------------------ 307

Query: 180 HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK 239
                    +FH  ALQ Y+L+C Q P GGL DK  K RD+YHTCYCLSGLSI QH    
Sbjct: 308 --------WMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFG-- 357

Query: 240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR 281
               + L   VLG   N L+P HPV+NI  D+  +A  +F +
Sbjct: 358 --SGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ 397
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.26
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.13
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.92
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.88
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.29
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.9
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 96.86
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 96.72
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 95.82
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 95.77
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 94.87
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 94.36
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 93.35
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 91.35
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 90.05
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 88.73
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-62  Score=462.32  Aligned_cols=233  Identities=52%  Similarity=0.917  Sum_probs=207.3

Q ss_pred             CCCCCCCeeecCCCcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCCcccCCCCCCCchhHHHHHHHHHHHhc
Q 023444            1 MKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN   80 (282)
Q Consensus         1 ~~~~dG~F~~~~~ge~d~r~~y~av~~l~lL~~~~~~~~~~~~~~I~scq~~dGGF~~~p~~esh~~~TycAl~~L~lLg   80 (282)
                      +|++||||.++.++|+|+|++|||++++.||+.+++++++++++||++||++||||++.|+.|+|+++||||||+|.+||
T Consensus       164 lQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~  243 (401)
T d2h6fb1         164 LKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILK  243 (401)
T ss_dssp             TBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHcCCC-CcccccccCCCCCchhhhHHHHHHHHhhhhhcccCCCCCcccccCccccCCCCccccCC
Q 023444           81 EADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAS  159 (282)
Q Consensus        81 ~~~~id~~~~~~wl~~~Q~~-dGGF~gr~~~e~D~~ysy~a~a~l~lL~~~~~i~~~~~~~~i~~c~~~~~dGg~~~~~~  159 (282)
                      +++.+|++++++||.+||.. +|||+||+||.+|+|||||++++|.||+.......+..                     
T Consensus       244 ~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~---------------------  302 (401)
T d2h6fb1         244 RERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPA---------------------  302 (401)
T ss_dssp             CGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTT---------------------
T ss_pred             CCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhcccccc---------------------
Confidence            99999999999999999975 89999999999999999999999999998643211100                     


Q ss_pred             CCCCCCCCCCccccccccccccccccCCcccCHHHHHHHHHHhcCCCCCCCCCCCCCCCCchhhhHHHHhHHhhccCCCC
Q 023444          160 DVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLK  239 (282)
Q Consensus       160 ~~~~g~~~s~~~~~~~~~~~~f~~~~~~~l~~~~~l~~~iL~~~Q~~~GGf~grp~k~~D~cyS~w~la~Lsll~~~~~~  239 (282)
                                             ......++|.++|++|||.|+|.+.|||+++|+|.||+|||||++|+||++++....
T Consensus       303 -----------------------~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~  359 (401)
T d2h6fb1         303 -----------------------LSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSG  359 (401)
T ss_dssp             -----------------------CCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEET
T ss_pred             -----------------------ccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHhcCCcCcc
Confidence                                   001125799999999999999999999999999999999999999999999986533


Q ss_pred             CCCCCCCCccccCCCCCCcccCccccccCHHHHHHHHhhhcc
Q 023444          240 DEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  281 (282)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~~~  281 (282)
                      ...    ...+.+..++.|++|||+||||++++++|++||++
T Consensus       360 ~~~----~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~  397 (401)
T d2h6fb1         360 AML----HDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ  397 (401)
T ss_dssp             TEE----EECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred             Ccc----cccccCCcccccccCCCcccCCHHHHHHHHHHHHh
Confidence            221    11344556788999999999999999999999975
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure