Citrus Sinensis ID: 023801
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 277 | 2.2.26 [Sep-21-2011] | |||||||
| Q43317 | 325 | Cysteine synthase OS=Citr | N/A | no | 0.989 | 0.843 | 0.864 | 1e-125 | |
| O81154 | 325 | Cysteine synthase OS=Sola | N/A | no | 0.989 | 0.843 | 0.843 | 1e-124 | |
| Q00834 | 325 | Cysteine synthase OS=Spin | N/A | no | 0.992 | 0.846 | 0.84 | 1e-123 | |
| O23733 | 322 | Cysteine synthase OS=Bras | N/A | no | 0.992 | 0.854 | 0.832 | 1e-122 | |
| P38076 | 325 | Cysteine synthase OS=Trit | N/A | no | 0.989 | 0.843 | 0.817 | 1e-121 | |
| P47998 | 322 | Cysteine synthase OS=Arab | yes | no | 0.992 | 0.854 | 0.825 | 1e-120 | |
| O23735 | 324 | Cysteine synthase OS=Bras | N/A | no | 0.992 | 0.848 | 0.825 | 1e-120 | |
| P80608 | 325 | Cysteine synthase OS=Zea | N/A | no | 0.989 | 0.843 | 0.813 | 1e-120 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | yes | no | 0.989 | 0.843 | 0.802 | 1e-119 | |
| Q9XEA6 | 321 | Cysteine synthase OS=Oryz | no | no | 0.989 | 0.853 | 0.806 | 1e-119 |
| >sp|Q43317|CYSK_CITLA Cysteine synthase OS=Citrullus lanatus PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/274 (86%), Positives = 261/274 (95%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMISDAE KGLITPGESVLIEPTSGNTGIGLAF+AAAK YRLII MPASMSLERR
Sbjct: 51 RIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRT 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLTDPA+GMKGAVQKAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+W+
Sbjct: 111 ILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWR 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GSGG+IDALVSGIGTGGT+TGAGK+LKE+NPNIKLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 171 GSGGKIDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+VN++DEV+QVSS+E+IETAKLLALKEGL VGISSG AAAAAI IAKRPENA
Sbjct: 231 AGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIV +FPSFGERYLS+VLFESV++E E+M FE
Sbjct: 291 GKLIVAVFPSFGERYLSTVLFESVKRETENMVFE 324
|
Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine. Citrullus lanatus (taxid: 3654) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 2 |
| >sp|O81154|CYSK_SOLTU Cysteine synthase OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/274 (84%), Positives = 259/274 (94%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLI PGESVLIEPTSGNTG+GLAFMAAAK Y+LIITMP+SMSLERRI
Sbjct: 51 RIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILR F +ELVLTDPAKGMKGA+ KAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 111 ILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GS G++DAL SGIGTGGTITG+GK+L+E+NPN+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 171 GSNGKVDALASGIGTGGTITGSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVLEVN+ID+VVQVSS+E+IE AKLLALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 231 AGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPSFGERYLSSVLFE+VR+EAE+MT E
Sbjct: 291 GKLIVVIFPSFGERYLSSVLFETVRREAENMTVE 324
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/275 (84%), Positives = 258/275 (93%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMI+DAE GLITPGESVLIEPTSGNTGIGLAF+AAAK Y+LIITMPASMSLERR
Sbjct: 51 RIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRT 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAEL+LTDPAKGMKGAVQKAEEI KTPN+Y+LQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID VSGIGTGGTITGAGK+LKE+NP++KL G+EP ES VLSGGKPGPHKIQG+G
Sbjct: 171 GTGGKIDIFVSGIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+VNIIDEVVQ+SS+E+IE AKLLALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 231 AGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKLIV +FPSFGERYLSSVLF+SVRKEAESM E+
Sbjct: 291 GKLIVAVFPSFGERYLSSVLFDSVRKEAESMVIES 325
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23733|CYSK1_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/275 (83%), Positives = 255/275 (92%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS+ERRI
Sbjct: 48 RIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+ID VSGIGTGGTITGAGK+LKE+NPN+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 168 GTDGKIDGFVSGIGTGGTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P VLEV++IDEVVQVSSDE+I+ A+LLALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 228 AGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENA 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V +FPSFGERYLS+VLF++ RKEAESMTF+A
Sbjct: 288 GKLFVAVFPSFGERYLSTVLFDATRKEAESMTFQA 322
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/274 (81%), Positives = 254/274 (92%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KG I PG+SVLIEPTSGNTGIGLAFMAAAK YRL++TMPASMS+ERRI
Sbjct: 52 RIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRI 111
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL+AFGAEL+LTDP GMKGAVQKAEE+ AKTPN+Y+LQQFEN ANPKIHYETTGPE+WK
Sbjct: 112 ILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWK 171
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID LVSGIGTGGTITG GK+L+E+NPNIKLYG+EPTES +L+GGKPGPHKIQGIG
Sbjct: 172 GTGGKIDGLVSGIGTGGTITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIG 231
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+IIDE +QVSSDE+IE AK LALKEGL VGISSG AAAAAI++A+RPENA
Sbjct: 232 AGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENA 291
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKL VV+FPSFGERYLSSVLF S++KEAESM E
Sbjct: 292 GKLFVVVFPSFGERYLSSVLFHSIKKEAESMVVE 325
|
Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/275 (82%), Positives = 252/275 (91%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRI
Sbjct: 48 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 168 GTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENA
Sbjct: 228 AGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 288 GKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O23735|CYSK2_BRAJU Cysteine synthase OS=Brassica juncea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/275 (82%), Positives = 253/275 (92%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS+ERRI
Sbjct: 50 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRI 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 110 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 169
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+ID +SGIGTGGTITGAGK+LKE+NPN+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 170 GTEGKIDGFISGIGTGGTITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIG 229
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P VLE N+IDEVVQVSSDE+I+ A+LLA +EGL VGISSG AAAAAI++AKRPENA
Sbjct: 230 AGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENA 289
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V +FPSFGERYLS+VLF++ RKEAESMTFEA
Sbjct: 290 GKLFVAVFPSFGERYLSTVLFDATRKEAESMTFEA 324
|
Brassica juncea (taxid: 3707) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P80608|CYSK_MAIZE Cysteine synthase OS=Zea mays PE=1 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/274 (81%), Positives = 253/274 (92%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG SVLIEPTSGNTGIGLAFMAAAK Y+L +TMPASMS+ERRI
Sbjct: 51 RIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL+AFGAELVLTDP GMKGAV+KAEEI AKTPN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 111 ILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G+ID LVSGIGTGGTITG G++L+E+NPN+KLYG+EP ES VL+GGKPGPHKIQGIG
Sbjct: 171 ATAGKIDGLVSGIGTGGTITGTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+++DE +QVSSDEAIETAK LALKEGL VGISSG AAAAA+ +AKRPENA
Sbjct: 231 AGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKL VV+FPSFGERYLSSVLF+S++KEAESM E
Sbjct: 291 GKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVE 324
|
Zea mays (taxid: 4577) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/274 (80%), Positives = 253/274 (92%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LI+TMPASMS+ERRI
Sbjct: 51 RIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL+AFGAELVLTDP GMKGA+QKA+E+ AK PN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 111 ILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D LVSGIGTGGT+TG GK+LKE+NP IK+YG+EPTES +LSGG+PGPHKIQGIG
Sbjct: 171 ATAGKVDILVSGIGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVL+VN++DEVVQVSSDEAI AK LALKEGL VGISSG AA AAI +A+RPEN
Sbjct: 231 AGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENK 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKL+VV+FPSFGERYLSSVLFES+++EAE+M FE
Sbjct: 291 GKLVVVVFPSFGERYLSSVLFESIKREAENMVFE 324
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/274 (80%), Positives = 255/274 (93%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK YRL++TMPASMS+ERRI
Sbjct: 48 RIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL+AFGAEL+LTDP GMKGAVQKAEE+ AKT N+++LQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG++D LVSGIGTGGTITGAG++L+E+NP+IK+YG+EP ES VLSGGKPGPHKIQGIG
Sbjct: 168 GTGGKVDGLVSGIGTGGTITGAGRYLREQNPDIKIYGVEPVESAVLSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVL+V++I+E VQVSSDEAIE AK LALKEGL VGISSG AAAAA+ +A+RPEN
Sbjct: 228 AGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENE 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKL VV+FPSFGERYLSSVLF+S++KEAE+M E
Sbjct: 288 GKLFVVVFPSFGERYLSSVLFQSIKKEAENMVVE 321
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 277 | ||||||
| 351727525 | 325 | cysteine synthase [Glycine max] gi|18252 | 0.989 | 0.843 | 0.894 | 1e-128 | |
| 224099811 | 325 | predicted protein [Populus trichocarpa] | 0.989 | 0.843 | 0.890 | 1e-128 | |
| 255552177 | 325 | cysteine synthase, putative [Ricinus com | 0.989 | 0.843 | 0.912 | 1e-128 | |
| 146148622 | 325 | O-acetylserine (thiol)lyase [Glycine soj | 0.989 | 0.843 | 0.883 | 1e-127 | |
| 158263556 | 325 | O-acetylserine(thiol)-lyase [Sesamum ind | 0.989 | 0.843 | 0.901 | 1e-127 | |
| 357480875 | 325 | Cysteine synthase [Medicago truncatula] | 0.989 | 0.843 | 0.901 | 1e-126 | |
| 356573072 | 325 | PREDICTED: cysteine synthase-like [Glyci | 0.989 | 0.843 | 0.864 | 1e-126 | |
| 357480877 | 284 | Cysteine synthase [Medicago truncatula] | 0.989 | 0.964 | 0.901 | 1e-126 | |
| 388503006 | 325 | unknown [Medicago truncatula] | 0.989 | 0.843 | 0.897 | 1e-125 | |
| 255644573 | 325 | unknown [Glycine max] | 0.989 | 0.843 | 0.854 | 1e-125 |
| >gi|351727525|ref|NP_001235628.1| cysteine synthase [Glycine max] gi|18252506|gb|AAL66291.1|AF452451_1 cysteine synthase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/274 (89%), Positives = 264/274 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAA+ Y+LIITMPASMSLERRI
Sbjct: 51 RIGYSMIADAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAARGYKLIITMPASMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY+LQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GS G+IDA VSGIGTGGTITGAGK+LKE+NPNIKL G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 171 GSDGKIDAFVSGIGTGGTITGAGKYLKEQNPNIKLIGVEPVESPVLSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVLEVN++DEV+Q+SSDEAIETAKLLALKEGLFVGISSG AAAAA +IAKRPENA
Sbjct: 231 AGFIPGVLEVNLLDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAFQIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIV +FPSFGERYLSSVLFESVR+EAESMTFE
Sbjct: 291 GKLIVAVFPSFGERYLSSVLFESVRREAESMTFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099811|ref|XP_002311629.1| predicted protein [Populus trichocarpa] gi|222851449|gb|EEE88996.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/274 (89%), Positives = 266/274 (97%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMS ERRI
Sbjct: 51 RIGYSMIADAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSNERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLT+PAKGMKGAVQKAEEI AKTPNAY+LQQFENP+NPK+HYETTGPE+WK
Sbjct: 111 ILRAFGAELVLTNPAKGMKGAVQKAEEIKAKTPNAYILQQFENPSNPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GSGG++DALVSGIGTGGTITGAGK+LKE+NPNIKLYG+EP ESP+LSGGKPGPHKIQGIG
Sbjct: 171 GSGGKVDALVSGIGTGGTITGAGKYLKEQNPNIKLYGVEPVESPILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVL+V I+DEVVQ+SSDEAIETAKLLALKEGL VGISSG AAAAA++IAKRPENA
Sbjct: 231 AGFVPGVLDVKIVDEVVQISSDEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPSFGERYLSSVLF+SV++EAESM FE
Sbjct: 291 GKLIVVVFPSFGERYLSSVLFDSVKREAESMKFE 324
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552177|ref|XP_002517133.1| cysteine synthase, putative [Ricinus communis] gi|223543768|gb|EEF45296.1| cysteine synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/274 (91%), Positives = 266/274 (97%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAEAKGLITPG++VLIEPTSGNTGIGLAFMAAAK YRLIITMPASMSLERRI
Sbjct: 51 RIGYSMIADAEAKGLITPGQNVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN ANPKIHYETTGPE+WK
Sbjct: 111 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENAANPKIHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GSGG+IDALVSGIGTGGTITGAGK+LKE+NPNIKL+G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 171 GSGGKIDALVSGIGTGGTITGAGKYLKEQNPNIKLFGVEPVESPVLSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVLEV+IIDEV+QVSS EAIETAKL+ALKEGL VGIS G A AAAI+IAKRPENA
Sbjct: 231 AGFVPGVLEVDIIDEVIQVSSQEAIETAKLVALKEGLLVGISCGAATAAAIKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPSFGERYLSSVLFESVR+EAESMT+E
Sbjct: 291 GKLIVVVFPSFGERYLSSVLFESVRREAESMTYE 324
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|146148622|gb|ABQ02253.1| O-acetylserine (thiol)lyase [Glycine soja] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/274 (88%), Positives = 261/274 (95%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAA+ Y+LIITMPASMSLERRI
Sbjct: 51 RIGYSMIADAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAARGYKLIITMPASMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY+LQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GS G+ DA VSGIGTGGTITGAGK+LKE+NPNIKL G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 171 GSDGKTDAFVSGIGTGGTITGAGKYLKEQNPNIKLIGVEPVESPVLSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL VN++DEV+Q+SSDEAIETAKLLALKEGLFVGISSG AAAA +IAKRPENA
Sbjct: 231 AGFIPGVLGVNLLDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAATFQIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIV +FPSFGERYLSSVLFESVR+EAESMTFE
Sbjct: 291 GKLIVAVFPSFGERYLSSVLFESVRREAESMTFE 324
|
Source: Glycine soja Species: Glycine soja Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|158263556|gb|ABW24494.1| O-acetylserine(thiol)-lyase [Sesamum indicum] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/274 (90%), Positives = 263/274 (95%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAEA+GLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERRI
Sbjct: 51 RIGYSMITDAEAQGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+Y+LQQFENPANPKIHYETTGPELWK
Sbjct: 111 ILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPELWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+IDA VSGIGTGGTITGAGKFLKE NPNIKLYG+EP ESP+LSGGKPGPHKIQGIG
Sbjct: 171 GANGKIDAFVSGIGTGGTITGAGKFLKEHNPNIKLYGVEPVESPILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+VN+IDEV+QVSSDEAIETAKLLALKEGL VGISSG AAAAAI IAKRPENA
Sbjct: 231 AGFIPGVLDVNLIDEVIQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPSFGERYLSSVLFESVR+EAESMT E
Sbjct: 291 GKLIVVIFPSFGERYLSSVLFESVRREAESMTVE 324
|
Source: Sesamum indicum Species: Sesamum indicum Genus: Sesamum Family: Pedaliaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480875|ref|XP_003610723.1| Cysteine synthase [Medicago truncatula] gi|217074042|gb|ACJ85381.1| unknown [Medicago truncatula] gi|355512058|gb|AES93681.1| Cysteine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/274 (90%), Positives = 265/274 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 51 RIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 171 GTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPENA
Sbjct: 231 AGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPSFGERYLSSVLFESVR+EAE+MTFE
Sbjct: 291 GKLIVVVFPSFGERYLSSVLFESVRREAETMTFE 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573072|ref|XP_003554689.1| PREDICTED: cysteine synthase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/274 (86%), Positives = 262/274 (95%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI DAE KGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 51 RIGYSMIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRT 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+YMLQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GS G++DALVSGIGTGGT+TGAGK+LKE+NP+IKLYGIEP ESP+LSGGKPGPHKIQGIG
Sbjct: 171 GSSGKVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+++DEVVQ+SS+EAIETAKLLALKEGL VGISSG AAAAA++IAKRPENA
Sbjct: 231 AGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIV +FPSFGERYLSSVLFESV++EAES+ FE
Sbjct: 291 GKLIVAVFPSFGERYLSSVLFESVKREAESLVFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480877|ref|XP_003610724.1| Cysteine synthase [Medicago truncatula] gi|355512059|gb|AES93682.1| Cysteine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/274 (90%), Positives = 265/274 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 10 RIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 69
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+WK
Sbjct: 70 ILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIWK 129
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 130 GTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGIG 189
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPENA
Sbjct: 190 AGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENA 249
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPSFGERYLSSVLFESVR+EAE+MTFE
Sbjct: 250 GKLIVVVFPSFGERYLSSVLFESVRREAETMTFE 283
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503006|gb|AFK39569.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/274 (89%), Positives = 264/274 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 51 RIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEE+LAKTPNAY+LQQFENPANPK+HYETTGPE+WK
Sbjct: 111 ILLAFGAELVLTDPAKGMKGAVQKAEELLAKTPNAYILQQFENPANPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+ G+IDA VSGIGTGGTITGAGK+LKE+N NIKL G+EP ESPVLSGGKPGPHKIQGIG
Sbjct: 171 GTDGKIDAFVSGIGTGGTITGAGKYLKEQNSNIKLIGVEPVESPVLSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGFVPGVLEVN+IDEVVQ+SSDEAIETAKLLALKEGLFVGISSG AAAAAI+IAKRPENA
Sbjct: 231 AGFVPGVLEVNLIDEVVQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPS GERYLSSVLFESVR+EAE+MTFE
Sbjct: 291 GKLIVVVFPSLGERYLSSVLFESVRREAETMTFE 324
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255644573|gb|ACU22789.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/274 (85%), Positives = 261/274 (95%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMI DAE KGLITPGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMP+SMSLERR
Sbjct: 51 RIGHSMIVDAEEKGLITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRT 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRAFGAELVLTDPAKGMKGAVQKAEEI KTPN+YMLQQFENP NPK+HYETTGPE+WK
Sbjct: 111 ILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYMLQQFENPTNPKVHYETTGPEIWK 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
GS G++DALVSGIGTGGT+TGAGK+LKE+NP+IKLYGIEP ESP+LSGGKPGPHKIQGIG
Sbjct: 171 GSSGKVDALVSGIGTGGTVTGAGKYLKEQNPDIKLYGIEPVESPILSGGKPGPHKIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+++DEVVQ+SS+EAIETAKLLALKEGL VGISSG AAAAA++IAKRPENA
Sbjct: 231 AGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAVKIAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKL+V +FPSFGERYLSSVLFESV++EAES+ FE
Sbjct: 291 GKLVVAVFPSFGERYLSSVLFESVKREAESLVFE 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 277 | ||||||
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.992 | 0.854 | 0.738 | 5.1e-106 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.978 | 0.691 | 0.675 | 1.5e-97 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.978 | 0.625 | 0.667 | 5.2e-97 | |
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.989 | 0.845 | 0.620 | 1.6e-88 | |
| TAIR|locus:2143814 | 323 | CYSD2 "cysteine synthase D2" [ | 0.989 | 0.848 | 0.616 | 2.9e-87 | |
| TAIR|locus:2143754 | 323 | DES1 "L-cysteine desulfhydrase | 0.989 | 0.848 | 0.598 | 1.2e-83 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.978 | 0.720 | 0.553 | 8.2e-83 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.978 | 0.772 | 0.568 | 1.7e-82 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.978 | 0.722 | 0.549 | 4.1e-81 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.978 | 0.736 | 0.538 | 2.9e-80 |
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 203/275 (73%), Positives = 226/275 (82%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRI
Sbjct: 48 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID VS K+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 168 GTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
AGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL V +RPENA
Sbjct: 228 AGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 288 GKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 183/271 (67%), Positives = 221/271 (81%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLITPG+SVL+E TSGNTGIGLAF+AA+K Y+LI+TMPASMSLERR+
Sbjct: 118 RIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRV 177
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+LRAFGAELVLT+PAKGM GA+QKAEEIL KTPN+YMLQQF+NPANPKIHYETTGPE+W+
Sbjct: 178 LLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWE 237
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G+ID LV+ +F+KE+ P +K+ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 238 DTRGKIDILVAGIGTGGTITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIG 297
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
AGFVP L++ I+DE + +SS+EAIET+K LAL+EGL V KRPENA
Sbjct: 298 AGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENA 357
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLI V+FPSFGERYLS+ LF+S+R+E E M
Sbjct: 358 GKLIAVVFPSFGERYLSTQLFQSIREECEQM 388
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 181/271 (66%), Positives = 218/271 (80%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR+
Sbjct: 156 RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 216 LLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWD 275
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V+ +F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 276 DTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
AGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL V KRPENA
Sbjct: 336 AGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLI V+FPSFGERYLS+ LF+S+R+E E M
Sbjct: 396 GKLIAVVFPSFGERYLSTPLFQSIREEVEKM 426
|
|
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 170/274 (62%), Positives = 209/274 (76%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI Y MI DAE KGLITPG+S LIE TSGNTGIGLAF+ AAK Y++++TMP+SMSLER+I
Sbjct: 51 RIAYGMIKDAEDKGLITPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKI 110
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL A GAE+ LTDP+KG++G + KAEEI +K P++ ML+QF+NP+NP+ HY TTGPE+W+
Sbjct: 111 ILLALGAEVHLTDPSKGVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWR 170
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
S G +D LV+ +FLKEKN + K+YG+EPTES V+SGGKPG H IQGIG
Sbjct: 171 DSAGEVDILVAGVGTGGTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPGTHLIQGIG 230
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
AG +P L+ N++DEV+QV+S EAIETAKLLALKEGL V KRPENA
Sbjct: 231 AGLIPDNLDFNVLDEVIQVTSVEAIETAKLLALKEGLLVGISSGAAAAAAIKVAKRPENA 290
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPS GERYLS+ LFESVR EAE++ +
Sbjct: 291 GKLIVVIFPSGGERYLSTSLFESVRHEAENLPIQ 324
|
|
| TAIR|locus:2143814 CYSD2 "cysteine synthase D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 169/274 (61%), Positives = 208/274 (75%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI YSMI DAE KGLITPG+S LIEPT+GNTGIGLA M AA+ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEPTAGNTGIGLACMGAARGYKVILVMPSTMSLERRI 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRA GAEL L+D G+KG ++K E IL+KTP Y+ QQFENPANP+IHY TTGPE+W+
Sbjct: 110 ILRALGAELHLSDQRIGLKGMLEKTEAILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
S G++D LV+ KFLKE+N +IK+ +EP ESPVLSGG+PGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTATGVGKFLKEQNKDIKVCVVEPVESPVLSGGQPGPHLIQGIG 229
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
+G VP L++ I+DE++QV+ +EAIETAKLLALKEGL V KRPENA
Sbjct: 230 SGIVPFNLDLTIVDEIIQVAGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENA 289
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVV+FPS GERYLS+ LF+S+R EAE++ E
Sbjct: 290 GKLIVVVFPSGGERYLSTKLFDSIRYEAENLPIE 323
|
|
| TAIR|locus:2143754 DES1 "L-cysteine desulfhydrase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 164/274 (59%), Positives = 205/274 (74%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI YSMI DAE KGLITPG+S LIE T GNTGIGLA + A++ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEATGGNTGIGLASIGASRGYKVILLMPSTMSLERRI 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRA GAE+ LTD + G+KG ++KA+EIL+KTP Y+ QF NP NP+IHY TTGPE+W+
Sbjct: 110 ILRALGAEVHLTDISIGIKGQLEKAKEILSKTPGGYIPHQFINPENPEIHYRTTGPEIWR 169
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
S G++D LV+ KFLKEKN +IK+ +EP+ES VLSGGKPGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTVTGTGKFLKEKNKDIKVCVVEPSESAVLSGGKPGPHLIQGIG 229
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
+G +P L+++I+DE++QV+ +EAIET KLLA+KEGL V KRPEN
Sbjct: 230 SGEIPANLDLSIVDEIIQVTGEEAIETTKLLAIKEGLLVGISSGASAAAALKVAKRPENV 289
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPS GERYLS+ LFESVR EAE++ E
Sbjct: 290 GKLIVVIFPSGGERYLSTELFESVRYEAENLPVE 323
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 150/271 (55%), Positives = 201/271 (74%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI+DAE KGLITPGE++LIEPTSGN GI +AFMAA + Y++++TMP+ SLERR+
Sbjct: 98 RPALSMINDAEEKGLITPGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRV 157
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+R FGA+L+LTDP KGM G V+KA ++L TPNAYMLQQF NPAN K+H+ETTGPE+W+
Sbjct: 158 CMRCFGADLILTDPTKGMGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWE 217
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V ++LK KNPN+++YG+EP ES VL+GGKPGPH I G G
Sbjct: 218 DTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSIMGNG 277
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
GF P +L++++++ V++V+S++A+ A+ LALKEGL V K+PEN
Sbjct: 278 VGFKPDILDLDMLERVIEVTSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENK 337
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV + PSFGERYLSSVLF+ +R+EAE+M
Sbjct: 338 GKLIVTVHPSFGERYLSSVLFQELRQEAENM 368
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 154/271 (56%), Positives = 199/271 (73%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++MI+DAE KGLITPG++ LIEPTSGN GI +AFMAA K Y++I+TMP+ SLERR+
Sbjct: 75 RPAFAMINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRV 134
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RAFGA+LV TDP KGM G ++KA ++L TPNAYMLQQF NPAN + H+ETTGPE+W+
Sbjct: 135 TMRAFGADLVTTDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWE 194
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G +D V ++LK KNPN+K+YGIEPTES VL+GG PGPH+I G G
Sbjct: 195 DTQGNVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPGPHEITGNG 254
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
GF P +L++++++EV+ VSS+E++ A+ LALKEGL V RPEN
Sbjct: 255 VGFKPDILDMDVMEEVLMVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENK 314
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV I PSFGERYLSSVL+E +RKEA++M
Sbjct: 315 GKLIVTIHPSFGERYLSSVLYEDIRKEAQNM 345
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 149/271 (54%), Positives = 198/271 (73%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI+DAE KGLITPGE+ LIEPTSGN GI +AFMAA K Y++++TMP+ SLERR+
Sbjct: 99 RPALSMINDAEEKGLITPGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 158
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+R FGA+L+LTDP KGM G V+KA ++L TPNA+MLQQF NPAN K+H+ETTGPE+W+
Sbjct: 159 CMRCFGADLILTDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWE 218
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V ++LK KNPN+++YG+EP ES VL+GGKPGPH I G G
Sbjct: 219 DTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSITGNG 278
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
GF P +L++++++ V++V S++A+ A+ LALKEGL V K+PEN
Sbjct: 279 VGFKPDILDMDMMERVIEVRSEDAVNMARQLALKEGLMVGISSGANTVAAMELAKKPENK 338
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV + SFGERYLSSVLF+ +R+EAE+M
Sbjct: 339 GKLIVTVHASFGERYLSSVLFQDLRQEAENM 369
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 146/271 (53%), Positives = 200/271 (73%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +MI DAE KGLI+PG++VLIEPTSGN GI +AFMAA K Y++++TMP+ S+ERR+
Sbjct: 92 RPALAMIEDAEKKGLISPGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRV 151
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
++RAFGA+L+LTDP KGM G V+KA ++L TP+ +MLQQF NPAN ++H+ETTGPE+W+
Sbjct: 152 VMRAFGADLILTDPDKGMGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWE 211
Query: 123 GSGGRIDALVSXXXXXXXXXXXXKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V ++LK +NPN+K+YG+EP ES +L+GGKPGPH I G G
Sbjct: 212 DTQGKVDIFVMGIGSGGTVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNG 271
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVXXXXXXXXXXXXXXXKRPENA 242
GF P +L+++++D V++V SD+A++ A+ LAL+EGL V KRPEN
Sbjct: 272 VGFKPEILDMDVMDAVLEVKSDDAVKMARQLALQEGLLVGISSGANTIAALDLAKRPENK 331
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV I PSFGERYLSS LF+ +R+EAE+M
Sbjct: 332 GKLIVTIHPSFGERYLSSALFKELREEAENM 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5773 | 0.9458 | 0.8451 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5773 | 0.9458 | 0.8451 | yes | no |
| P57171 | CYSK_BUCAI | 2, ., 5, ., 1, ., 4, 7 | 0.5461 | 0.9422 | 0.8285 | yes | no |
| P63871 | CYSK_STAAN | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| P63872 | CYSK_STAAW | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| P37887 | CYSK_BACSU | 2, ., 5, ., 1, ., 4, 7 | 0.5665 | 0.9350 | 0.8409 | yes | no |
| P31300 | CYSKP_CAPAN | 2, ., 5, ., 1, ., 4, 7 | 0.7299 | 0.9530 | 0.7058 | N/A | no |
| P45040 | CYSK_HAEIN | 2, ., 5, ., 1, ., 4, 7 | 0.5531 | 0.9530 | 0.8354 | yes | no |
| P63870 | CYSK_STAAM | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| P47998 | CYSK1_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.8254 | 0.9927 | 0.8540 | yes | no |
| O81155 | CYSKP_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.7601 | 0.9783 | 0.7020 | N/A | no |
| Q8KA48 | CYSK_BUCAP | 2, ., 5, ., 1, ., 4, 7 | 0.5498 | 0.9422 | 0.8105 | yes | no |
| P0ABK6 | CYSK_ECO57 | 2, ., 5, ., 1, ., 4, 7 | 0.5304 | 0.9711 | 0.8328 | N/A | no |
| P38076 | CYSK_WHEAT | 2, ., 5, ., 1, ., 4, 7 | 0.8175 | 0.9891 | 0.8430 | N/A | no |
| P0ABK5 | CYSK_ECOLI | 4, ., 5, ., 1, ., 5 | 0.5304 | 0.9711 | 0.8328 | N/A | no |
| Q6GJF8 | CYSK_STAAR | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| Q6GBX5 | CYSK_STAAS | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| O81154 | CYSK_SOLTU | 2, ., 5, ., 1, ., 4, 7 | 0.8430 | 0.9891 | 0.8430 | N/A | no |
| Q5HIG2 | CYSK_STAAC | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| P0A1E4 | CYSK_SALTI | 2, ., 5, ., 1, ., 4, 7 | 0.5412 | 0.9711 | 0.8328 | N/A | no |
| P32260 | CYSKP_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.7299 | 0.9891 | 0.7154 | N/A | no |
| P0A1E3 | CYSK_SALTY | 2, ., 5, ., 1, ., 4, 7 | 0.5412 | 0.9711 | 0.8328 | yes | no |
| Q8CMT6 | CYSK_STAES | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| Q5XAQ3 | CYSK_STRP6 | 2, ., 5, ., 1, ., 4, 7 | 0.5551 | 0.9350 | 0.8274 | N/A | no |
| P73410 | CYSK_SYNY3 | 2, ., 5, ., 1, ., 4, 7 | 0.6098 | 0.9530 | 0.8461 | N/A | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5839 | 0.9350 | 0.8354 | yes | no |
| Q7DDL5 | CYSK_NEIMB | 2, ., 5, ., 1, ., 4, 7 | 0.5458 | 0.9386 | 0.8387 | yes | no |
| Q43317 | CYSK_CITLA | 2, ., 5, ., 1, ., 5, 2 | 0.8649 | 0.9891 | 0.8430 | N/A | no |
| Q00834 | CYSK_SPIOL | 2, ., 5, ., 1, ., 4, 7 | 0.84 | 0.9927 | 0.8461 | N/A | no |
| P80608 | CYSK_MAIZE | 2, ., 5, ., 1, ., 4, 7 | 0.8138 | 0.9891 | 0.8430 | N/A | no |
| Q9XEA8 | CYSK2_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8029 | 0.9891 | 0.8430 | yes | no |
| P71128 | CYSM_CAMJE | 2, ., 5, ., 1, ., 4, 7 | 0.4847 | 0.9241 | 0.8561 | yes | no |
| O23733 | CYSK1_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8327 | 0.9927 | 0.8540 | N/A | no |
| Q5HRP1 | CYSK_STAEQ | 2, ., 5, ., 1, ., 4, 7 | 0.5437 | 0.9277 | 0.8290 | yes | no |
| Q9XEA6 | CYSK1_ORYSJ | 2, ., 5, ., 1, ., 4, 7 | 0.8065 | 0.9891 | 0.8535 | no | no |
| O23735 | CYSK2_BRAJU | 2, ., 5, ., 1, ., 4, 7 | 0.8254 | 0.9927 | 0.8487 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 277 | |||
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 0.0 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-152 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-148 | |
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-144 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-141 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-139 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-137 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-129 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 1e-100 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 1e-91 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 4e-83 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 3e-77 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 8e-64 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 2e-63 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 3e-55 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 6e-27 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 3e-16 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 1e-15 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 1e-11 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 2e-10 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 1e-09 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 6e-09 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 4e-07 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 6e-07 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 1e-06 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 4e-06 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 9e-06 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 3e-05 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 9e-05 | |
| cd06446 | 365 | cd06446, Trp-synth_B, Tryptophan synthase-beta: Tr | 2e-04 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 2e-04 | |
| PRK06110 | 322 | PRK06110, PRK06110, hypothetical protein; Provisio | 0.001 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 0.002 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 511 bits (1318), Expect = 0.0
Identities = 244/275 (88%), Positives = 264/275 (96%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAFMAAAK Y+LIITMPASMSLERRI
Sbjct: 48 RIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRI 107
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFGAELVLTDPAKGMKGAVQKAEEILAKTPN+Y+LQQFENPANPKIHYETTGPE+WK
Sbjct: 108 ILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWK 167
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG++DA VSGIGTGGTITGAGK+LKE+NP+IKLYG+EP ES VLSGGKPGPHKIQGIG
Sbjct: 168 GTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIG 227
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+PGVL+V+++DEVVQVSSDEAIETAKLLALKEGL VGISSG AAAAAI+IAKRPENA
Sbjct: 228 AGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENA 287
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKLIVVIFPSFGERYLSSVLFESV+KEAE+M FE
Sbjct: 288 GKLIVVIFPSFGERYLSSVLFESVKKEAENMVFEP 322
|
Length = 322 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 425 bits (1094), Expect = e-152
Identities = 169/262 (64%), Positives = 214/262 (81%), Gaps = 1/262 (0%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI SMI DAE +GL+ PG+ +IE TSGNTGI LA +AAAK Y+LI+TMP +MSLERR
Sbjct: 39 DRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERR 97
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LRA+GAEL+LT +GMKGA+ KAEE+ A+T ML QFENPANP+ HY+TTGPE+W
Sbjct: 98 KLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIW 157
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + GRID V+G+GTGGTITG G++LKE+NPNIK+ +EP ESPVLSGG+PGPHKIQGI
Sbjct: 158 RDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGI 217
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P +L++++IDEV+ VS ++AIETA+ LA +EG+ VGISSG A AAA+++AKR EN
Sbjct: 218 GAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLEN 277
Query: 242 AGKLIVVIFPSFGERYLSSVLF 263
A K+IV I P GERYLS+ LF
Sbjct: 278 ADKVIVAILPDTGERYLSTGLF 299
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-148
Identities = 174/263 (66%), Positives = 217/263 (82%), Gaps = 3/263 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI +MI DAE +GL+ PG+ ++EPTSGNTGI LA +AAA+ Y+LI+TMP +MS+ERR
Sbjct: 38 DRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERR 96
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+L+A+GAELVLT A+GMKGA+ KAEEI A TPN+Y MLQQFENPANP+IH +TTGPE+
Sbjct: 97 KLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEI 156
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
W+ + G++DA V+G+GTGGTITG G+ LKE+ PNIK+ +EP ESPVLSGGKPGPHKIQG
Sbjct: 157 WRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQG 216
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGF+P L ++IDEV+ VS +EAIETA+ LA +EG+ VGISSG A AAA+++AKRPE
Sbjct: 217 IGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRPE 276
Query: 241 NAGKLIVVIFPSFGERYLSSVLF 263
KLIVVI PS GERYLS+ LF
Sbjct: 277 -PDKLIVVILPSTGERYLSTPLF 298
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-144
Identities = 191/274 (69%), Positives = 233/274 (85%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI YSMI DAE KGLITPG+S LIE T+GNTGIGLA + AA+ Y++I+ MP++MSLERRI
Sbjct: 50 RIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRI 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
ILRA GAE+ LTD + G+KG ++KAEEIL+KTP Y+ QQFENPANP+IHY TTGPE+W+
Sbjct: 110 ILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
S G++D LV+G+GTGGT TG GKFLKEKN +IK+ +EP ES VLSGG+PGPH IQGIG
Sbjct: 170 DSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIG 229
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
+G +P L++ I+DE++QV+ +EAIETAKLLALKEGL VGISSG AAAAA+++AKRPENA
Sbjct: 230 SGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENA 289
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLIVVIFPS GERYLS+ LFESVR EAE++ E
Sbjct: 290 GKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323
|
Length = 323 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 403 bits (1035), Expect = e-141
Identities = 190/274 (69%), Positives = 229/274 (83%), Gaps = 1/274 (0%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR+
Sbjct: 156 RIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 216 LLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWD 275
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGIG
Sbjct: 276 DTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIG 335
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPENA
Sbjct: 336 AGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENA 395
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
GKLI V + G R + + S+ +
Sbjct: 396 GKLIAVSLFASG-RDIYTPRCSSLSGKRWRKCSL 428
|
Length = 429 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 394 bits (1014), Expect = e-139
Identities = 156/260 (60%), Positives = 198/260 (76%), Gaps = 4/260 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI MI DAE +GL+ PG + +IEPTSGNTGIGLA +AAAK YR II MP +MS E+R
Sbjct: 34 DRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKR 92
Query: 62 IILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE++LT A+ GMKGA+ KA E+ A+TPNA+ L QFENPANP+ HYETT PE
Sbjct: 93 KLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPE 152
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
+W+ G++DA V+G+GTGGTITG ++LKEKNPN+++ G++P S + SGG PGPHKI+
Sbjct: 153 IWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIE 212
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
GIGAGF+P L+ ++IDEVV+VS +EA A+ LA +EGL VG SSG A AAA+++AKR
Sbjct: 213 GIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRL 272
Query: 240 ENAGKLIVVIFPSFGERYLS 259
GK IV I P GERYLS
Sbjct: 273 G-PGKTIVTILPDSGERYLS 291
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 390 bits (1003), Expect = e-137
Identities = 171/271 (63%), Positives = 220/271 (81%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +MI DAE K LITPG++ LIEPTSGN GI LAFMAA K Y++I+TMP+ SLERR+
Sbjct: 92 RPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRV 151
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RAFGAELVLTDP KGM G V+KA E+L TP+A+MLQQF NPAN ++H+ETTGPE+W+
Sbjct: 152 TMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWE 211
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+ G++D V GIG+GGT++G GK+LK KNPN+K+YG+EP ES VL+GGKPGPH I G G
Sbjct: 212 DTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNG 271
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
GF P +L+++++++V++VSS++A+ A+ LALKEGL VGISSG AA+ +AK PEN
Sbjct: 272 VGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENK 331
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
GKLIV + PSFGERYLSSVLF+ +RKEAE+M
Sbjct: 332 GKLIVTVHPSFGERYLSSVLFQELRKEAENM 362
|
Length = 368 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 369 bits (950), Expect = e-129
Identities = 154/260 (59%), Positives = 200/260 (76%), Gaps = 5/260 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI MI DAE +GL+ PG ++E TSGNTGI LA +AAAK YRLII MP +MS ERR
Sbjct: 43 DRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERR 101
Query: 62 IILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPE 119
+LRA GAE++LT A G MKGA+++A+E+ A+ P A L QFENPANP+ HYETTGPE
Sbjct: 102 KLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPE 161
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
+W+ + G++DA V+G+GTGGTITG ++LKE+NPN+++ ++P S +LSGG+ GPHKI+
Sbjct: 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIE 220
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
GIGAGFVP L++++IDEV++VS +EAI TA+ LA +EGL VGISSG A AAA+++AK
Sbjct: 221 GIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL 280
Query: 240 ENAGKLIVVIFPSFGERYLS 259
AGK IV I P GERYLS
Sbjct: 281 P-AGKTIVTILPDSGERYLS 299
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = e-100
Identities = 116/276 (42%), Positives = 165/276 (59%), Gaps = 15/276 (5%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R ++I DAE +GL+ PG ++E T+GNTGIGLA +AAA+ Y+ +I MP + S E++
Sbjct: 45 DRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKK 103
Query: 62 IILRAFGAELVLT------DPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYE 114
+LRA GAELVL +P +KGA + AEE++A PN A QF+NPAN + HYE
Sbjct: 104 DLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE 163
Query: 115 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSG 170
TTGPE+W+ + G++D V +GTGGT+ G ++LKE NP +K+ +PT S +G
Sbjct: 164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTG 223
Query: 171 --GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228
G +GIG G + LE ID+ +++ +EA+ TA L +EGL +G SSG
Sbjct: 224 ELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGIN 283
Query: 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
AAA+ +A+ G IV I GERY S +
Sbjct: 284 VAAALRLARE-LGPGHTIVTILCDSGERYQSKLFNP 318
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (699), Expect = 1e-91
Identities = 120/266 (45%), Positives = 165/266 (62%), Gaps = 17/266 (6%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI AE +G I PG+ LIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 45 RPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRA 103
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA A ++ A+ +L QF NP NP HYETTGPE+W+
Sbjct: 104 AMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWR 162
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI- 181
+ GRI VS +GT GTI G ++LKE+NP +++ G++P E I GI
Sbjct: 163 QTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGS----------SIPGIR 212
Query: 182 --GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
++P + + + +D V+ VS EA T + LA +EG+F G+SSGGA AAA+ IA+
Sbjct: 213 RWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIAREN 272
Query: 240 ENAGKLIVVIFPSFGERYLSSVLFES 265
NA +IV I G+RYLS+ +F +
Sbjct: 273 PNA--VIVAIICDRGDRYLSTGVFPA 296
|
Length = 296 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 4e-83
Identities = 114/261 (43%), Positives = 166/261 (63%), Gaps = 11/261 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI +AE +G I PG+ VLIE TSGNTGI LA +AA K YR+ + MP +MS ER+
Sbjct: 41 RPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKA 99
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA A E+ + L QF NP NP HY +TGPE+W+
Sbjct: 100 AMRAYGAELILVTKEEGMEGARDLALELANRGEGKL-LDQFNNPDNPYAHYTSTGPEIWQ 158
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+GGRI VS +GT GTI G +FLKE+NP +++ G++P E + G I+
Sbjct: 159 QTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWP 211
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
++PG+ + +++D V+ + +A T + LA++EG+F G+SSGGA AAA+ +A+ E
Sbjct: 212 TEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLAR--ELP 269
Query: 243 GKLIVVIFPSFGERYLSSVLF 263
++V I G+RYLS+ +F
Sbjct: 270 DAVVVAIICDRGDRYLSTGVF 290
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 241 bits (616), Expect = 3e-77
Identities = 110/269 (40%), Positives = 164/269 (60%), Gaps = 11/269 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAEA G + PG +IEPTSGNTGIGLA +AA K Y+ II +P MS E+
Sbjct: 44 RIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVD 102
Query: 63 ILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+L+A GAE+V T A + + A+ ++ + P A++L Q+ NP+NP HY+ TGPE
Sbjct: 103 VLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP------ 173
+ + G++D V+G GTGGTITG ++LKE NP ++ G +P E +L+ +
Sbjct: 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGR 221
Query: 174 GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
P+K++GIG F+P VL+ ++DE ++ E+ + A+ L +EGL VG SSG A AA+
Sbjct: 222 TPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAAL 281
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVL 262
+ A+ ++IVV+ P Y++ L
Sbjct: 282 KAAEDELTEDQVIVVLLPDSIRNYMTKFL 310
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 8e-64
Identities = 97/263 (36%), Positives = 144/263 (54%), Gaps = 8/263 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ A +G ITPG + +IE +SGN GI LA + A K R I + ++S +
Sbjct: 40 RPALYILEAAIKRGRITPG-TTIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLK 98
Query: 63 ILRAFGAELVLT---DPAKGMKGA-VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+LRA+GAE+ D G G + + E+LA P+AY Q+ NP NP+ HY TG
Sbjct: 99 LLRAYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGR 158
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 178
E+ + + +D L G+ T GT+ G + L+E+ PN K+ ++ S V+ GG PG I
Sbjct: 159 EIAR-AFPPLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVDAVGS-VIFGGPPGRRHI 216
Query: 179 QGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238
G+GA VP +L+ ++ID+VV V + + + LA +EG+ G SSG AA + R
Sbjct: 217 PGLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPR 276
Query: 239 PENAGKLIVVIFPSFGERYLSSV 261
G +V I P GERYL +V
Sbjct: 277 IP-PGSTVVAILPDRGERYLDTV 298
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 2e-63
Identities = 92/250 (36%), Positives = 126/250 (50%), Gaps = 41/250 (16%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++I AE +G + G V+IE T GNTGI LA AA + I MP S E+
Sbjct: 33 RGALNLILLAEEEGKLPKG--VIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVA 90
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA GAE+VL A+ A+E+ + P AY + QF+NPAN T G E+ +
Sbjct: 91 QMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQG-TIGLEILE 147
Query: 123 GSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
GG + DA+V +G GG I G + LKE PN+K+ G+EP
Sbjct: 148 QLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------- 188
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
EVV VS +EA+E +LLA +EG+ V SS A AAA+++AK+
Sbjct: 189 ---------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL-G 232
Query: 242 AGKLIVVIFP 251
GK +VVI
Sbjct: 233 KGKTVVVILT 242
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 3e-55
Identities = 87/264 (32%), Positives = 132/264 (50%), Gaps = 22/264 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ A +G + ++E +SGNTG LA AA ++ I +P S + +
Sbjct: 38 RGAAYLLLRALERG------ATVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLL 91
Query: 63 ILRAFGAELVL---TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
++RA GAE++L ++A E+LA L Q+ NP N Y+T G E
Sbjct: 92 LMRALGAEVILVVSEGDYDDALELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLE 150
Query: 120 LWK-GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG------K 172
+ + G DA+V +G GG G + LKE P I++ G+EP +P L+
Sbjct: 151 ILEQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRV 210
Query: 173 PGPHKIQGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGG 227
P P I G+G G + G L + +IDE V VS +EA+E +LLA +EG+ V SS
Sbjct: 211 PKPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARREGILVEPSSAA 270
Query: 228 AAAAAIEIAKRPENAGKLIVVIFP 251
A AAA+ +A+ GK +VV+
Sbjct: 271 ALAAALRLAELELGKGKRVVVVLT 294
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 6e-27
Identities = 89/315 (28%), Positives = 137/315 (43%), Gaps = 60/315 (19%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R+ +I +A G + PG V+ E ++G+T I LA +A A + + +P +++E+
Sbjct: 86 RVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQ 144
Query: 63 ILRAFGAELVLTDP-------------------AKGMKGAVQKAEEILAK---------- 93
IL A GA + P A + +K E
Sbjct: 145 ILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCIS 204
Query: 94 ------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 141
+ QFEN AN + HYE TGPE+W+ + G +DA V+ GTGGT+
Sbjct: 205 EEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTL 264
Query: 142 TGAGKFLKEKNPNIKLYGIEPTESPVLSG-------------GK----PGPHKIQGIGAG 184
G +FL+EKNPNIK + I+P S + + G+ P +GIG
Sbjct: 265 AGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGIN 324
Query: 185 FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK 244
+ + +D + + EA+E ++ L +GLFVG SS A+ +A+ G
Sbjct: 325 RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGH 383
Query: 245 LIVVIFPSFGERYLS 259
IV I G R+LS
Sbjct: 384 TIVTILCDSGMRHLS 398
|
Length = 423 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-16
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 32/241 (13%)
Query: 29 TSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK 86
++GN G+A+ AAK+ + I MP + + R +GAE++L A
Sbjct: 81 SAGNHAQGVAY--AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNF--DDAYAA 136
Query: 87 AEEILAKTPNAYMLQQFENPANPKIH----YETTGPELWKGSGGRIDALVSGIGTGGTIT 142
AEE LA+ + F++P T E+ + DA+ +G GG I+
Sbjct: 137 AEE-LAEEEGLTFVPPFDDP-----DVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLIS 190
Query: 143 GAGKFLKEKNPNIKLYGIEPTESPVL-----SGGKP----GPHKI-QGIGAGFVPGVLEV 192
G LK +P IK+ G+EP +P + +G I G+ PG L
Sbjct: 191 GIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK-RPGDLTF 249
Query: 193 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
I+ D++V V DE + L + + +G A AA+ K GK +VV
Sbjct: 250 EILRELVDDIVLVDEDEICAAMRDLFERTKIIAE-PAGALALAALLAGKIEPLQGKTVVV 308
Query: 249 I 249
I
Sbjct: 309 I 309
|
Length = 347 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 1e-15
Identities = 73/274 (26%), Positives = 111/274 (40%), Gaps = 53/274 (19%)
Query: 3 RIGYSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 58
R Y+ + + AKG++ ++GN G+A+ A I MP +
Sbjct: 50 RGAYNKLLSLSEEERAKGVVAA--------SAGNHAQGVAYAAKLLGIPATIVMPETAPA 101
Query: 59 ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 118
+ RA+GAE+VL A KA E LA+ + F++P
Sbjct: 102 AKVDATRAYGAEVVLYGE--DFDEAEAKARE-LAEEEGLTFIHPFDDP------------ 146
Query: 119 ELWKGSG----------GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
++ G G +DA+ +G GG I G +K +PN K+ G+EP +P +
Sbjct: 147 DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM 206
Query: 169 S----GGKPGPHKIQGI----GAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALK 216
+ GKP A PG L II D+VV VS DE LL +
Sbjct: 207 AQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFER 266
Query: 217 EGLFV-GISSGGAAAAAIEIAKRPENAGKLIVVI 249
E L +G A AA+ + + + GK +VV+
Sbjct: 267 EKLVAEP--AGALALAALL-SGKLDLKGKKVVVV 297
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 29 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV---- 84
++GN G+A+ A + +I MP S + +++GAE++L G
Sbjct: 55 SAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVIL-------HGDDYDEA 107
Query: 85 QKAEEILAKTPNAYMLQQFENP----ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 140
LA+ + F++ I E +D ++ +G GG
Sbjct: 108 YAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIME------DIPDVDTVIVPVGGGGL 161
Query: 141 ITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK-IQGIGAGFV---PGVLEV 192
I+G K+ NPN+K+ G+E +P L GK + ++ I G PG L
Sbjct: 162 ISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTF 221
Query: 193 NII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
NII D+VV V +E I A L L+ + +G A AA+ K K+ VV
Sbjct: 222 NIIKEYVDDVVTV-DEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVDVKGKKIAVV 280
Query: 249 I 249
+
Sbjct: 281 L 281
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-10
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 48/229 (20%)
Query: 3 RIGYSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 58
R Y+ ++ + +A+G+I ++GN G+AF AA + +I MP +
Sbjct: 50 RGAYNKMAQLSPEQKARGVIAA--------SAGNHAQGVAFSAARLGLKALIVMPETTPD 101
Query: 59 ERRIILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP---ANPKI 111
+ +R FG E+VL D AK KA E L++ + F++P A
Sbjct: 102 IKVDAVRGFGGEVVLHGANFDDAKA------KAIE-LSQEKGLTFIHPFDDPLVIAGQG- 153
Query: 112 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV---- 167
T E+ + +DA+ +G GG G +K+ P IK+ G+EPT+S
Sbjct: 154 ---TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQA 210
Query: 168 LSGGKPGPHKIQGIGAGFVPGV-----------LEVNIIDEVVQVSSDE 205
L G+P G+ F GV L +D++V V +DE
Sbjct: 211 LDAGEPVDLDQVGL---FADGVAVKRVGDETFRLCQQYLDDIVTVDTDE 256
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 36/257 (14%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80
G + ++GNT LA AA + ++ +PA +L + A+GA ++ +G
Sbjct: 69 GVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVL---AVEGN 125
Query: 81 KGAVQKAEEILAKTPNAYMLQQFENPANP-KIH-YETTGPELWKGSGGRI-DALVSGIGT 137
+ LA+ Y+ N NP ++ +T E+ + G + D +V +G
Sbjct: 126 FDDALRLVRELAEENWIYLS----NSLNPYRLEGQKTIAFEIAEQLGWEVPDYVVVPVGN 181
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTE-SPVLSGGKPG---------PHKI- 178
GG IT K KE + P ++ G++ +P++ K G P I
Sbjct: 182 GGNITAIWKGFKELKELGLIDRLP--RMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIA 239
Query: 179 QGIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
I G G + + E V VS +E +E KLLA EG+FV +S + A
Sbjct: 240 TAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLK 299
Query: 234 EIAKRPENAGKLIVVIF 250
++ + VV+
Sbjct: 300 KLREEGIIDKGERVVVV 316
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-09
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 38/246 (15%)
Query: 26 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL-VLTDPAKGMKGAV 84
I +SGN G G+A A + + P S + +RA GAE+ + A + A
Sbjct: 72 ITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAA 131
Query: 85 QKAEEILAKTPNAYMLQQFENPAN-PKI--HYETTGPELWKGSGGRIDALVSGIGTGGTI 141
++A E K + +P N P++ T G EL + +DA+ +G GG I
Sbjct: 132 RRAAEQQGKV--------YISPYNDPQVIAGQGTIGMELVE-QQPDLDAVFVAVGGGGLI 182
Query: 142 TGAGKFLKEKNPNIKLYG------------------IEPTESPVLSGGKPGPHKIQGIGA 183
+G +LK +P ++ G +E E P LS G G G+
Sbjct: 183 SGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAG-----GVEP 237
Query: 184 GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
G + L +ID+ V VS +E E +L+A + + ++G A AAA+++A R + G
Sbjct: 238 GAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPRYQ--G 295
Query: 244 KLIVVI 249
K + V+
Sbjct: 296 KKVAVV 301
|
Length = 317 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 28/209 (13%)
Query: 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70
+ A+G+IT ++GN G+A AA + +I MP + + +RA G E
Sbjct: 82 EQLARGVITA--------SAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGE 133
Query: 71 LVLTDPA--KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRI 128
+VL + + A++ AEE + F++P + T E+ + G +
Sbjct: 134 VVLHGESFPDALAHALKLAEE-----EGLTFVPPFDDP-DVIAGQGTVAMEILRQHPGPL 187
Query: 129 DALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGG-KPGPHKIQGIGAGFVP 187
DA+ +G GG I G ++K P IK+ G+EP +S L G + G F
Sbjct: 188 DAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFAD 247
Query: 188 GVLEVNI-----------IDEVVQVSSDE 205
GV I +DEVV VS+DE
Sbjct: 248 GVAVAQIGEHTFELCRHYVDEVVTVSTDE 276
|
Length = 521 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 6e-07
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 128 IDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKP----GPHKI- 178
+D +V IG GG I+G +K P +++ G++ +P L+ G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 179 QGIGAGFVPGVLEVNII----DEVVQVSSDE---AI----ETAKLLALKEGLFVGISSGG 227
GI PG L II D+VV VS +E AI E AKL+ EG +G
Sbjct: 231 DGIAVK-RPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 228 AAAAAIEIAKRPENAGKLIVVI 249
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
|
Length = 404 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 29/258 (11%)
Query: 6 YSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL 64
+S +S+ E + G+IT ++GN G+A+ A+ I MP ++ +
Sbjct: 64 FSKLSEDELRNGVITA--------SAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAV 115
Query: 65 RAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 124
A+GA ++LT + A + A++I A N ++ F + T G E+ +
Sbjct: 116 EAYGAHVILT--GRDYDEAHRYADKI-AMDENRTFIEAFNDRWVISGQ-GTIGLEIMEDL 171
Query: 125 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHK--- 177
+D ++ +G GG I+G K NPN+K+ GIE S L GK H
Sbjct: 172 PD-LDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGV 230
Query: 178 --IQGIGAGFVPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAA 231
GI + PG L +I +D++V V ++E++ A + V SG A
Sbjct: 231 SICDGISVKY-PGDLTFDIAKNYVDDIVTV-TEESVSKAIYKLFEREKIVAEPSGAVGLA 288
Query: 232 AIEIAKRPENAGKLIVVI 249
AI K K+ +V+
Sbjct: 289 AIMEGKVDVKGKKVAIVV 306
|
Length = 406 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 56/269 (20%), Positives = 99/269 (36%), Gaps = 66/269 (24%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79
G ++ +SGNTG A AA ++ + P +S + + GA ++ G
Sbjct: 125 GAKTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVI---AVDG 181
Query: 80 MKGAVQK-AEEILAKTPNAYMLQQFENPANP------KIHYETTGPELWKGSGGRI-DAL 131
Q+ +E + + N NP K + E+ + G + D +
Sbjct: 182 NFDDAQELVKEAANREGLLSAV----NSINPYRLEGQKTYAF----EIAEQLGWKAPDHV 233
Query: 132 VSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIGA-GFVPGVL 190
V +G GG + K KE P K+ ++P + G+ A GF PGV
Sbjct: 234 VVPVGNGGNLLAIYKGFKEGLPIGKI-----DKAP----------NMNGVQAEGFSPGVY 278
Query: 191 EVNIIDEVVQ------------------------------VSSDEAIETAKLLALKEGLF 220
E + VS +E +E KLLA +EG+
Sbjct: 279 AWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGIL 338
Query: 221 VGISSGGAAAAAIEIAKRPENAGKLIVVI 249
+ S A AA +++ ++ + + +V++
Sbjct: 339 IEPHSAVAVAALLKLREKIIDPDETVVLV 367
|
Length = 411 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 13/171 (7%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R Y+ + L ++ ++GN G A+ + MPA+ ++
Sbjct: 49 RGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKID 104
Query: 63 ILRAFGAE---LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-TTGP 118
++ FG E ++L A E + + F++P I + T
Sbjct: 105 RVKIFGGEFIEIILV--GDTFDQCAAAAREHVEDH-GGTFIPPFDDPR--IIEGQGTVAA 159
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS 169
E+ + D +V +G GG I+G +L +P K+ G+EP +P +
Sbjct: 160 EILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMK 210
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 66/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%)
Query: 26 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQ 85
I ++GN G+A A + +I MP + L + +A GAE++L A
Sbjct: 72 IAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILK--GDNYDEAYA 129
Query: 86 KAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG----------GRIDALVSGI 135
A E AK N + FE+ E+ G G +D +V +
Sbjct: 130 FALEY-AKENNLTFIHPFEDE------------EVMAGQGTIALEMLDEISDLDMVVVPV 176
Query: 136 GTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL--SGGKPGPHKIQG---IGAGF-VPGV 189
G GG I+G K+ NPNIK+ G+ +P + S + I G V
Sbjct: 177 GGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236
Query: 190 LEVNI------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAG 243
+N+ +D+ VQV DE I A L L++ V +G A+ AA+ K G
Sbjct: 237 SPINLAIILECVDDFVQV-DDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDLKKG 295
Query: 244 KLIVVI 249
K I V+
Sbjct: 296 KKIGVV 301
|
Length = 403 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 56/230 (24%)
Query: 6 YSMIS----DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
Y+ ++ + A+G+IT ++GN G+A AA + +I MP + +
Sbjct: 56 YNKMAQLTEEQLARGVITA--------SAGNHAQGVALSAARLGIKAVIVMPVTTPDIKV 107
Query: 62 IILRAFGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE-TT 116
+RAFG E+VL D A A E LA+ + F++P I + T
Sbjct: 108 DAVRAFGGEVVLHGDSFDEAY------AHAIE-LAEEEGLTFIHPFDDPD--VIAGQGTI 158
Query: 117 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPH 176
E+ + +DA+ +G GG I G ++K+ P IK+ G+EP +S L
Sbjct: 159 AMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK------- 211
Query: 177 KIQGIGAG----------FVPGV-----------LEVNIIDEVVQVSSDE 205
+ AG F GV L +D+V+ V +DE
Sbjct: 212 --AALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDE 259
|
Length = 504 |
| >gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 129 DALVSGIGTGGTITG-AGKFLKEKNPNIKLYGIEPTESPV--------LSGGKPG----- 174
D +++ +G G G F+ +K+ +KL G+E + L GG G
Sbjct: 204 DVVIACVGGGSNAAGLFYPFINDKD--VKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGL 261
Query: 175 --------PHKIQG---IGAGFV-PGV-------LEVNIIDEVVQVSSDEAIETAKLLAL 215
+I I AG PGV + + E V V+ +EA+E KLLA
Sbjct: 262 KMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRV-EYVAVTDEEALEAFKLLAR 320
Query: 216 KEGLFVGISSGGAAAAAIEIAKRPENAGKLIVV 248
EG+ + S A A AI++AK+ K+IVV
Sbjct: 321 TEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV 352
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. Length = 365 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAE 88
GN G+ +A+ AAA + +P + + LRA GAE+V+ A ++ A A
Sbjct: 77 GNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAA 136
Query: 89 EILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFL 148
E A +AY Q E A T G E + +D ++ +G GG I G +
Sbjct: 137 ETGALLCHAY--DQPEVLAGAG----TLGLE-IEEQAPGVDTVLVAVGGGGLIAGIAAWF 189
Query: 149 KEKNPNIKLYGIEPTESPVL----SGGKPGPHKIQGIGA--------GFVPGVLEVNIID 196
+ ++ +EP +P L + G+P + GI A G + L +
Sbjct: 190 E---GRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVV 246
Query: 197 EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232
V V SDEAI A+ AL E L + + G A A A
Sbjct: 247 TSVLV-SDEAIIAAR-RALWEELRLAVEPGAATALA 280
|
Length = 310 |
| >gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72
P +I T GN G +AF A I +P S+E+ +RA GAEL+
Sbjct: 68 PRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELI 120
|
Length = 322 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA---ELVLT----DPAKGMKGA 83
GN G+A+ +I MP + ++ +R FG E+VL D + A
Sbjct: 82 GNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDS--AAAA 139
Query: 84 VQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWK--GSGGRIDALVSGI 135
+ AEE A + F++P T E+ + G D + +
Sbjct: 140 QEYAEET-----GATFIPPFDDPDVIAGQG-------TVAVEILEQLEKEGSPDYVFVPV 187
Query: 136 GTGGTITGAGKFLKEKNPNIKLYGIEPTESP----VLSGGKP 173
G GG I+G +LKE++P K+ G+EP + L GKP
Sbjct: 188 GGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKP 229
|
Length = 420 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 277 | |||
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 99.97 | |
| PRK09225 | 462 | threonine synthase; Validated | 99.97 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 99.96 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 99.95 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 99.92 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 99.88 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.85 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 93.35 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 91.77 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.56 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 89.93 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.46 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.08 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 88.72 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.66 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.45 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 87.9 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 87.88 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 87.73 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 87.6 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 87.28 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 86.36 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 86.25 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 85.83 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 85.6 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 85.36 | |
| KOG2616 | 266 | consensus Pyridoxalphosphate-dependent enzyme/pred | 85.08 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.96 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.94 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 84.27 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 84.07 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 83.94 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 83.47 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 83.4 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 83.24 | |
| TIGR00696 | 177 | wecB_tagA_cpsF bacterial polymer biosynthesis prot | 83.22 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.13 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.71 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 82.7 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 82.67 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 82.29 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 82.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.93 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 81.3 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 81.26 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 81.2 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 81.07 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 80.78 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 80.73 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 80.68 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 80.63 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 80.57 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 80.49 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 80.15 |
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=426.91 Aligned_cols=276 Identities=88% Similarity=1.326 Sum_probs=256.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|+++|..++++|.+.||.+.||++||||||+|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..++
T Consensus 46 KdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~ 125 (322)
T PLN02565 46 KDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGM 125 (322)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCc
Confidence 89999999999999999999977899999999999999999999999999999999999999999999999999865456
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+++++++||+||.|+..||+|+++||++|+++.||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 126 ~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 126 KGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred HHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 78888999998876678999999999998889999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++..+++.++.++|++.+..|..+..+.+|+++.|+|+|++++++.|++++|+++||+||+++++++++++++.
T Consensus 206 ep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~ 285 (322)
T PLN02565 206 EPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPE 285 (322)
T ss_pred ecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcC
Confidence 99999888777777777889988766777777889999999999999999999999999999999999999999988765
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|+||+|.||+|+.+|+.+.....+|+||
T Consensus 286 ~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~~ 321 (322)
T PLN02565 286 NAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVFE 321 (322)
T ss_pred CCCCeEEEEECCCccccCCchhhHHHHHHHhcCccC
Confidence 568899999999999999999999999999999997
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=412.63 Aligned_cols=256 Identities=60% Similarity=0.991 Sum_probs=243.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG- 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~- 79 (277)
|||.|++|+.+|+++|.|+||. +||++||||+|+++|++|+.+|+++++|||++++.+|+++|++|||+|+.++...+
T Consensus 42 KDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~ 120 (300)
T COG0031 42 KDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGN 120 (300)
T ss_pred hHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCc
Confidence 8999999999999999999994 79999999999999999999999999999999999999999999999999997444
Q ss_pred hHHHHHHHHHHHHhCCC-eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEE
Q 023801 80 MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 158 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vi 158 (277)
+..+.+.+++++++.|+ .++.+||+||.||..||.+++.||++|+++.+|++|+++|||||++|++++||+.+|+++++
T Consensus 121 ~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv 200 (300)
T COG0031 121 MKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIV 200 (300)
T ss_pred hHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEE
Confidence 78899999999999988 67778999999999999999999999998889999999999999999999999999999999
Q ss_pred EEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhc
Q 023801 159 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238 (277)
Q Consensus 159 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~ 238 (277)
+|||++++.+..+. +++.++||+.+++|..++.+.+|+++.|+|+++++++++|+++||+++++|||++++++++++++
T Consensus 201 ~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~ 279 (300)
T COG0031 201 AVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKE 279 (300)
T ss_pred EECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHh
Confidence 99999998876655 78899999999999888899999999999999999999999999999999999999999999988
Q ss_pred CCCCCCeEEEEecCCCCCCcc
Q 023801 239 PENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 239 ~~~~~~~vv~i~~~gG~~~~~ 259 (277)
.. ++++||+|+||+|+||+|
T Consensus 280 ~~-~g~~IVti~pD~G~RYls 299 (300)
T COG0031 280 LP-AGKTIVTILPDSGERYLS 299 (300)
T ss_pred cC-CCCeEEEEECCCcccccC
Confidence 64 689999999999999998
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-59 Score=417.68 Aligned_cols=276 Identities=62% Similarity=1.040 Sum_probs=252.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+.||.++||++|+||||+|+|++|+++|++|+||||+.++..|+++|+.|||+|+.++...++
T Consensus 90 KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~ 169 (368)
T PLN02556 90 KDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGM 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCc
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999999864445
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
...++.+.+++++.++++|++||+||.++..||.++++||++|+.+.||+||+|+|||||++|+++++|+.+|++|||+|
T Consensus 170 ~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigV 249 (368)
T PLN02556 170 GGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGV 249 (368)
T ss_pred cHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEE
Confidence 57788888888887788999999999995579999999999998668999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++..+.++|++.+..|+.++..++|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 250 ep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~ 329 (368)
T PLN02556 250 EPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPE 329 (368)
T ss_pred eeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc
Confidence 99999877777666667778877766777778899999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|++|+|.||+|+.+|++|..+...|+.+
T Consensus 330 ~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 330 NKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred CCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 468899999999999999999999999999988765
|
|
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=408.33 Aligned_cols=276 Identities=69% Similarity=1.084 Sum_probs=250.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.+.||.++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++++.|||+|+.++...+.
T Consensus 48 K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~ 127 (323)
T PLN00011 48 KDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGL 127 (323)
T ss_pred chHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcCh
Confidence 89999999999999999999877899999999999999999999999999999999999999999999999999864444
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
++.++.+++++++.+++++++||+|+.++..||.++++||++|+.++||+||+|+|+|||++|+++++|+.+|++|||||
T Consensus 128 ~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigV 207 (323)
T PLN00011 128 KGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVV 207 (323)
T ss_pred HHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 56677888888876678999999999987779999999999999668999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++..+++..+.++|++.+..|..+....+|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 208 e~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~ 287 (323)
T PLN00011 208 EPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPE 287 (323)
T ss_pred ecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhcc
Confidence 99999888777777777888887766666677789999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|++|+|+||+|+.+|+.|..++.+++.|
T Consensus 288 ~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 288 NAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred CCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 467899999999999999999999988877777654
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=412.22 Aligned_cols=261 Identities=73% Similarity=1.162 Sum_probs=240.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.++||+++||++||||||+|+|++|+.+|++++||||+++++.|+++|+.|||+|+.+++..++
T Consensus 154 KdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~ 233 (429)
T PLN03013 154 KDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM 233 (429)
T ss_pred HHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCCh
Confidence 89999999999999999999977899999999999999999999999999999999999999999999999999875556
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.++++.+++++++.++++|++||+||.|+..||+|+|+||++|++++||+||+|+|+||+++|+++++|+.+|+++||+|
T Consensus 234 ~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 234 TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred HHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 78889999998887688999999999997679999999999999768999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++.++.++|++.+.+|+.++..++|+++.|+|+|++++++.|++++|+++||+||++++++++++++..
T Consensus 314 ep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~ 393 (429)
T PLN03013 314 EPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPE 393 (429)
T ss_pred EeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc
Confidence 99999888777777778899998887888888899999999999999999999999999999999999999999887654
Q ss_pred CCCCeE-EEEecCCCCCCcchh
Q 023801 241 NAGKLI-VVIFPSFGERYLSSV 261 (277)
Q Consensus 241 ~~~~~v-v~i~~~gG~~~~~~~ 261 (277)
.++++| ++|++++|++|.++.
T Consensus 394 ~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 394 NAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred CCCCEEEEEEcCCCchhchhhh
Confidence 456664 777788999999984
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=391.56 Aligned_cols=262 Identities=65% Similarity=1.058 Sum_probs=238.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+.|| ++|+++|+||||+|+|++|+++|++|+||||+++++.|+++|+.+||+|+.+++..++
T Consensus 38 K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~ 116 (299)
T TIGR01136 38 KDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGM 116 (299)
T ss_pred cHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999975457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+++++++||+|+.++..||+++++||++|+++.||+||+|+|+||+++|++.+|++.+|.+||++|
T Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 117 KGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred HHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88889999998876578899999999987889999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++...++....+.+++.+..|+.+...++|+.+.|+|+|++++++.|++.+|+++||+||+++++++++.++..
T Consensus 197 e~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~ 276 (299)
T TIGR01136 197 EPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRLE 276 (299)
T ss_pred ecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcC
Confidence 99999888765555556677777667777778889999999999999999999999999999999999999999887754
Q ss_pred CCCCeEEEEecCCCCCCcchhcc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
.++++||+|+|+.|.||+|+..|
T Consensus 277 ~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 277 NADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred CCCCEEEEEECCCCccccCcccC
Confidence 56899999999999999997554
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=390.02 Aligned_cols=261 Identities=66% Similarity=1.073 Sum_probs=236.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+.+| ++||++|+||||+|+|++|+++|++|+||+|+++++.|+++|+.+||+|+.+++..++
T Consensus 37 K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~ 115 (298)
T TIGR01139 37 KDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGM 115 (298)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCH
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999975445
Q ss_pred HHHHHHHHHHHHhCCC-eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 81 KGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
.++.+.+++++++.++ +++++||+||.+++.||+++++||++|+++.||+||+|+|+||+++|++.+|++..+++|||+
T Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~ 195 (298)
T TIGR01139 116 KGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVA 195 (298)
T ss_pred HHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEE
Confidence 6778888888887743 568999999998788999999999999965799999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||.+++++...++..+.+++++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 196 Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~ 275 (298)
T TIGR01139 196 VEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP 275 (298)
T ss_pred EecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc
Confidence 99999987776666666777888776677777788999999999999999999999999999999999999999987764
Q ss_pred CCCCCeEEEEecCCCCCCcchhcc
Q 023801 240 ENAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
. ++++||+|+|++|.||+|+..|
T Consensus 276 ~-~~~~vv~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 276 E-PDKLIVVILPSTGERYLSTPLF 298 (298)
T ss_pred C-CCCEEEEEECCCCccccCcccC
Confidence 3 6789999999999999997544
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=385.45 Aligned_cols=273 Identities=68% Similarity=1.109 Sum_probs=256.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||.|+.||.+|+.+|.+.||.++|+++||||+|.++|++|+..|++|+++||+.++.+|+..|++||++|++++....+
T Consensus 83 KdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~ 162 (362)
T KOG1252|consen 83 KDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGM 162 (362)
T ss_pred HHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999976555
Q ss_pred HH---HHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
.. +...+.++..+.|+.+.+.||.||.|+..||.+++.|||+|+.+++|.+|.++|||||++|+.+++|+.+|+++|
T Consensus 163 ~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kV 242 (362)
T KOG1252|consen 163 KGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKV 242 (362)
T ss_pred CChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEE
Confidence 55 788999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCCCC--cccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHH
Q 023801 158 YGIEPTESPVLSGGKPGP--HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 235 (277)
Q Consensus 158 igV~~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~ 235 (277)
++|+|..+..+...++++ +.++|+|.++.|..++...+|+.+.+.++|++.+.++|+.+||+.++.|||+++++++++
T Consensus 243 v~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~ 322 (362)
T KOG1252|consen 243 VGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKL 322 (362)
T ss_pred EEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHH
Confidence 999999998887777776 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhcc
Q 023801 236 AKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273 (277)
Q Consensus 236 ~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 273 (277)
+++.+..++-+|++++|+|.+|+++++|++|..+..++
T Consensus 323 a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 323 AKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 99877555555555489999999999999999987765
|
|
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=389.24 Aligned_cols=269 Identities=43% Similarity=0.687 Sum_probs=232.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||++.++|.+++++|.++|| ++||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.+++..
T Consensus 44 K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 122 (330)
T PRK10717 44 KDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYA 122 (330)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccc
Confidence 899999999999999998888 56999999999999999999999999999999999999999999999999998631
Q ss_pred ----ChHHHHHHHHHHHHhC-CCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC
Q 023801 79 ----GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP 153 (277)
Q Consensus 79 ----~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~ 153 (277)
..+.+.+.++++.++. .+++|++||+||.++..||.++++||++|++..||+||+|+|+||+++|++++|++..|
T Consensus 123 ~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~ 202 (330)
T PRK10717 123 NPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNP 202 (330)
T ss_pred cccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCC
Confidence 1122344455554443 27899999999998678999999999999966799999999999999999999999999
Q ss_pred CcEEEEEecCCCCccCC---CC---CCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 154 NIKLYGIEPTESPVLSG---GK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~---~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
++||++|||++++.... ++ ...+.+++++.+..++.+....+|+++.|+|+|++++++.|++++|+++||+||+
T Consensus 203 ~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga 282 (330)
T PRK10717 203 KVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGI 282 (330)
T ss_pred CCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHH
Confidence 99999999999853321 21 2345678888776666666667899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhh
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 271 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 271 (277)
+++++++++++. .++++||+|+|++|+||+++++.++|+..+.
T Consensus 283 ~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~~~~~ 325 (330)
T PRK10717 283 NVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFLREKG 325 (330)
T ss_pred HHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHHHhcC
Confidence 999999987764 4678999999999999999988889988654
|
|
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=381.63 Aligned_cols=253 Identities=47% Similarity=0.776 Sum_probs=224.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.+++++|.+.|| ++||++|+||||+|+|++|+.+|++|+||||+.+++.|+++|+.|||+|+.++...++
T Consensus 43 K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 121 (296)
T PRK11761 43 KDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGM 121 (296)
T ss_pred hhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999998888 5699999999999999999999999999999999999999999999999999964467
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+|+.++..||+|+++||++|+++.+|+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 122 ~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 122 EGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred HHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888776 78999999999987788999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+.+ +.+......+..++...+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++
T Consensus 201 ep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~-- 271 (296)
T PRK11761 201 QPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE-- 271 (296)
T ss_pred ecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH--
Confidence 9998876532 1111112223444567789999999999999999999999999999999999999998765
Q ss_pred CCCCeEEEEecCCCCCCcchhccH
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFE 264 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~ 264 (277)
.++++||+|+||+|.||+|+..|+
T Consensus 272 ~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 272 NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred CCCCeEEEEECCCCcccCChhccc
Confidence 367899999999999999986654
|
|
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=389.14 Aligned_cols=269 Identities=33% Similarity=0.523 Sum_probs=229.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC----
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP---- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~---- 76 (277)
|||+|+++|.+|+++|.++|+. +|+++||||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.+++
T Consensus 84 KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~ 162 (423)
T PLN02356 84 KDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSIT 162 (423)
T ss_pred HHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCC
Confidence 8999999999999999988884 58889999999999999999999999999999999999999999999999963
Q ss_pred -CCChH-HHH---HHHHHHHHh--------------------------------CCCeEecCCCCCCcchhhhhhchHHH
Q 023801 77 -AKGMK-GAV---QKAEEILAK--------------------------------TPNAYMLQQFENPANPKIHYETTGPE 119 (277)
Q Consensus 77 -~~~~~-~~~---~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~g~~t~~~E 119 (277)
..++. .+. ..+.+++++ .++.+|++||+|+.++..|+..+|+|
T Consensus 163 ~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~E 242 (423)
T PLN02356 163 HKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPE 242 (423)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHH
Confidence 12221 111 223444433 14678999999999977766667999
Q ss_pred HHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCccC-------------CCC----CCCcccCccC
Q 023801 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-------------GGK----PGPHKIQGIG 182 (277)
Q Consensus 120 i~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-------------~~~----~~~~~~~gl~ 182 (277)
|++|++++||+||+|+||||+++|+++++|+.+|++||++|||.+++.+. .++ +.++.++|++
T Consensus 243 I~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig 322 (423)
T PLN02356 243 IWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIG 322 (423)
T ss_pred HHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCc
Confidence 99999768999999999999999999999999999999999999876331 121 1246788998
Q ss_pred CCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhc
Q 023801 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 262 (277)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~ 262 (277)
.+..|+.+....+|+++.|+|+|+++++++|++++|+++||+||++++++++++++. .++++||+|+|+.|.||+++++
T Consensus 323 ~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~ 401 (423)
T PLN02356 323 INRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFH 401 (423)
T ss_pred CCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhc
Confidence 887777788888999999999999999999999999999999999999999987653 3688999999999999999988
Q ss_pred cHHHHHhhh
Q 023801 263 FESVRKEAE 271 (277)
Q Consensus 263 ~~~~~~~~~ 271 (277)
.++|+.++.
T Consensus 402 ~~~w~~~~~ 410 (423)
T PLN02356 402 DPQYLSQHG 410 (423)
T ss_pred CHHHHHhcC
Confidence 888887654
|
|
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=374.74 Aligned_cols=252 Identities=45% Similarity=0.795 Sum_probs=223.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+.|| ++||++|+||||+|+|++|+++|++|+||||+.+++.|+++|+.|||+|+.+++..++
T Consensus 39 K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~ 117 (290)
T TIGR01138 39 KDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGM 117 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCh
Confidence 899999999999999999888 5699999999999999999999999999999999999999999999999999865457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+ .+|++||+|+.++..||.++++||++|++.+||+||+|+|+||+++|++.++|+.+|++|||+|
T Consensus 118 ~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 118 EGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred HHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 888889999988874 4689999999997778999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||.+++.+.+ +.+++.+..+..+....+|+++.|+|+|++++++.|++++|+++||+||++++++++++++
T Consensus 197 ep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~-- 267 (290)
T TIGR01138 197 QPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLARE-- 267 (290)
T ss_pred eCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--
Confidence 9999865432 1223333334445566789999999999999999999999999999999999999998775
Q ss_pred CCCCeEEEEecCCCCCCcchhcc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
.++++||+|+||+|.||+|+.+|
T Consensus 268 ~~~~~vv~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 268 LPDAVVVAIICDRGDRYLSTGVF 290 (290)
T ss_pred CCCCeEEEEECCCCccccCcccC
Confidence 36789999999999999998543
|
Alternate name: O-acetylserine (thiol)-lyase |
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=373.64 Aligned_cols=256 Identities=60% Similarity=0.966 Sum_probs=230.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||++.++|.+++++|.+++| ++|+++|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.++...
T Consensus 33 K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~ 111 (291)
T cd01561 33 KDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEAD 111 (291)
T ss_pred hHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCcC
Confidence 899999999999999988777 56999999999999999999999999999999999999999999999999999642
Q ss_pred ChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhh-hchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 79 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHY-ETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+.+++.+.+++++++.++++|++||+||.+ +.|+ +|+++||++|++..||+||+|+|+||+++|++.+|++..|.++|
T Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~v 190 (291)
T cd01561 112 GMKGAIAKARELAAETPNAFWLNQFENPAN-PEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRI 190 (291)
T ss_pred CHHHHHHHHHHHHhhCCCcEEecCCCCchH-HHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEE
Confidence 237788888888887667999999999999 4555 59999999999667999999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHh
Q 023801 158 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 237 (277)
Q Consensus 158 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~ 237 (277)
|+|||++++++.......+.++|++.+..++.+...++++++.|+|+|++++++.|++++|+++||++|+++++++++++
T Consensus 191 i~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~ 270 (291)
T cd01561 191 VGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAK 270 (291)
T ss_pred EEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHH
Confidence 99999999877444445567788887766777777789999999999999999999999999999999999999999887
Q ss_pred cCCCCCCeEEEEecCCCCCCcc
Q 023801 238 RPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 238 ~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+.. ++++||+|+|++|.||+|
T Consensus 271 ~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 271 RLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred hcC-CCCeEEEEECCCccccCC
Confidence 653 678999999999999986
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=393.19 Aligned_cols=270 Identities=41% Similarity=0.682 Sum_probs=234.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.+++++|.+.+| ++||++||||||+|+|++|+++|++|++|||+++++.|+.+++.|||+|+.+++...+
T Consensus 42 K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 120 (454)
T TIGR01137 42 KDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAF 120 (454)
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCC
Confidence 899999999999999999988 6799999999999999999999999999999999999999999999999999863223
Q ss_pred H---HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 K---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+ ...+.+.+++++.++.+|++||+|+.++..||.++|+||++|+++.||+||+|+|||||++|++.++++.+|.+||
T Consensus 121 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~v 200 (454)
T TIGR01137 121 DSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRI 200 (454)
T ss_pred CchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEE
Confidence 2 2356677787775567889999999997789999999999999767999999999999999999999999999999
Q ss_pred EEEecCCCCccCCC-----CCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 158 YGIEPTESPVLSGG-----KPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 158 igV~~~~~~~~~~~-----~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
++|||++++..... ....+.++|++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||++++++
T Consensus 201 i~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~ 280 (454)
T TIGR01137 201 VGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAA 280 (454)
T ss_pred EEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHH
Confidence 99999988633221 1113456777766556667778899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhh
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 271 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 271 (277)
++++++...++++||+++|++|.||+|+.++++|.....
T Consensus 281 ~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~ 319 (454)
T TIGR01137 281 LKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNG 319 (454)
T ss_pred HHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcC
Confidence 998874224678999999999999999999999877643
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=369.72 Aligned_cols=258 Identities=24% Similarity=0.310 Sum_probs=227.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|-|+|++.+.++.+++..+. .||++|+||||+++|++|+++|+|++||||.++|..|++.++.|||+|++++. +|
T Consensus 56 K~RGA~n~i~~Ls~e~~~~~---gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~ 130 (347)
T COG1171 56 KIRGAYNKLSSLSEEEERAA---GVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NF 130 (347)
T ss_pred hhhhHHHHHHhcChhhhhcC---ceEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CH
Confidence 78999999999775544343 49999999999999999999999999999999999999999999999999995 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++++++ ++.|++|||+|.. ++||+|++.||++|++..||+||||+|+||+++|++.+++...|.+|||||
T Consensus 131 dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGV 208 (347)
T COG1171 131 DDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGV 208 (347)
T ss_pred HHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999998 8999999999998 899999999999999555799999999999999999999999999999999
Q ss_pred ecCCCCccC----CC-CC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GG-KP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~-~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+ ++ ..+.++|++... .++.+.++++|+++.|+|+|+.++|+.+++.+++++||++++
T Consensus 209 Ep~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAl 288 (347)
T COG1171 209 EPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGAL 288 (347)
T ss_pred eeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHH
Confidence 999998764 33 22 234567887643 467788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++...+. .+++++++|+ +|||.+++ .|.+.++.
T Consensus 289 alAal~~~~~~~-~~g~~v~~il-SGgN~d~~--~~~~v~~~ 326 (347)
T COG1171 289 ALAALLAGKIEP-LQGKTVVVIL-SGGNIDFE--RLAEVLER 326 (347)
T ss_pred HHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHH--HHHHHHhc
Confidence 999999876664 5777889998 99995555 55554443
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=378.59 Aligned_cols=257 Identities=25% Similarity=0.312 Sum_probs=223.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|..+.+... + +.||++|+||||+++|++|+++|++|+||||..+|+.|+..++.|||+|+.+++ +|
T Consensus 68 K~RGA~n~i~~l~~~~~-~---~GVV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~ 141 (521)
T PRK12483 68 KIRGAYNKMARLPAEQL-A---RGVITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SF 141 (521)
T ss_pred HHHHHHHHHHHhHHHHh-c---CcEEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 79999999998875432 3 349999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|..+|++|||||
T Consensus 142 d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 142 PDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred HHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999887 7899999999998 899999999999999656999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 220 ep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaa 299 (521)
T PRK12483 220 EPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALA 299 (521)
T ss_pred EeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 999998764 2322 224456776433 2345567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++++.++...++++||+|+ ||||-+++ .+.++++
T Consensus 300 lAal~~~~~~~~~~g~~VV~Il-sGgNid~~--~l~~i~~ 336 (521)
T PRK12483 300 VAGIKKYAEREGIEGQTLVAID-SGANVNFD--RLRHVAE 336 (521)
T ss_pred HHHHHHHHHhcCCCCCEEEEEe-CCCCCCHH--HHHHHHH
Confidence 9999998776655788999999 99995554 5555543
|
|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=378.26 Aligned_cols=255 Identities=22% Similarity=0.277 Sum_probs=221.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+. .+++| ||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|++++. +|
T Consensus 140 K~RGA~n~I~~L~~e-~~~~G---VV~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~ 213 (591)
T PLN02550 140 KLRGAYNMMAKLPKE-QLDKG---VICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SY 213 (591)
T ss_pred HHHHHHHHHHHHHHh-cCCCC---EEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 799999999998654 34444 9999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+|+||++|+++.+|+||+|+|+||+++|++.++|..+|++|||||
T Consensus 214 dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGV 291 (591)
T PLN02550 214 DEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGV 291 (591)
T ss_pred HHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7799999999998 899999999999999656999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+.++|++... .++.+..+++|+++.|+|+|+.++++.+++++|+++||++|++
T Consensus 292 Ep~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~a 371 (591)
T PLN02550 292 EPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALA 371 (591)
T ss_pred EECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHH
Confidence 999998763 33331 24456666432 2344567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
++|++++.++...++++||+|+ ||||-+++ .+++.
T Consensus 372 lAall~~~~~~~~~g~~Vv~vl-sGgNid~~--~l~~v 406 (591)
T PLN02550 372 LAGAEAYCKYYGLKDENVVAIT-SGANMNFD--RLRIV 406 (591)
T ss_pred HHHHHHHHHhcCCCCCeEEEEe-cCCCCCHH--HHHHH
Confidence 9999998776556888999999 99996555 44444
|
|
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=355.31 Aligned_cols=260 Identities=20% Similarity=0.207 Sum_probs=217.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. .|+ ++||++|+||||+|+|++|+.+|++|+||+|..+++.|+++|+.|||+|+.+++. .+
T Consensus 32 K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~ 108 (316)
T cd06448 32 KIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV-WW 108 (316)
T ss_pred HHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc-hH
Confidence 89999999999999986 333 6799999999999999999999999999999999999999999999999999863 26
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHhhcC-CCcEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKN-PNIKL 157 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~v 157 (277)
+++.+.+++++++.++++|++||+||.+ ++||.++++||++|+++ .||+||+|+|+||+++|++++|++.+ ++++|
T Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~i 187 (316)
T cd06448 109 EADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPV 187 (316)
T ss_pred HHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEE
Confidence 6777778888777557899999999998 78999999999999965 59999999999999999999999996 99999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCCcc---CccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPG---VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|+|||++++++. .+++ ..+.++|++.+..+. .......|+++.|+|+|+++++++|++++||++||+|
T Consensus 188 i~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ss 267 (316)
T cd06448 188 VAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPAC 267 (316)
T ss_pred EEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhH
Confidence 999999997663 2222 234556787665432 2334568899999999999999999999999999999
Q ss_pred HHHHHHHHHH-----HhcCC-CCCCeEEEEecCCCCC-CcchhccHHHH
Q 023801 226 GGAAAAAIEI-----AKRPE-NAGKLIVVIFPSFGER-YLSSVLFESVR 267 (277)
Q Consensus 226 g~alaa~~~~-----~~~~~-~~~~~vv~i~~~gG~~-~~~~~~~~~~~ 267 (277)
|++++++++. .+++. .++++||+|+ ||||. +++ -|+++.
T Consensus 268 aa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~~~~~--~~~~~~ 313 (316)
T cd06448 268 GAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSNITLE--QLKEYK 313 (316)
T ss_pred HHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCCCCHH--HHHHHH
Confidence 9999999853 22222 4788999999 77773 443 444443
|
|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=371.74 Aligned_cols=256 Identities=23% Similarity=0.308 Sum_probs=221.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+... . +.||++|+||||+++|++|+++|++|+||||.++|..|++.++.|||+|+.++. ++
T Consensus 48 K~RgA~n~i~~l~~~~~-~---~gVV~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~ 121 (499)
T TIGR01124 48 KLRGAYNKMAQLSPEQK-A---RGVIAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NF 121 (499)
T ss_pred HHHHHHHHHHHhhHHhc-C---CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CH
Confidence 89999999998754322 2 459999999999999999999999999999999999999999999999999984 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+|+||++|++.+||+||+|+|+|||++|++.++|..+|++|||||
T Consensus 122 d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgV 199 (499)
T TIGR01124 122 DDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGV 199 (499)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 89999999998886 7899999999998 899999999999999657999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+.++++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 200 ep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~ 279 (499)
T TIGR01124 200 EPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALA 279 (499)
T ss_pred EECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHH
Confidence 999998663 2332 123456776543 2445667899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
+++++++.++...+++++|+|+ +|||-+++ .++.+.
T Consensus 280 lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~--~l~~~~ 315 (499)
T TIGR01124 280 LAGLKKYVALHGIRGQTLVAIL-SGANMNFH--RLRYVS 315 (499)
T ss_pred HHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHH
Confidence 9999998877655788999999 88996655 444443
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=364.12 Aligned_cols=254 Identities=24% Similarity=0.314 Sum_probs=217.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+.+. . +.||++|+||||+++|++|+++|++|+||||++++..|++.++.|||+|+++++ ++
T Consensus 51 K~RgA~n~i~~l~~~~~-~---~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~ 124 (403)
T PRK08526 51 KIRGAYNKIANLSEEQK-Q---HGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NY 124 (403)
T ss_pred HHHHHHHHHHhccHhhc-C---CEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 79999999999987654 2 459999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|..+|++|||||
T Consensus 125 ~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigV 201 (403)
T PRK08526 125 DEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201 (403)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999987 899999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||+++++
T Consensus 202 ep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~ 281 (403)
T PRK08526 202 GAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAAS 281 (403)
T ss_pred EECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHH
Confidence 999998763 2332 234556776532 1223345789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++.. +.. .++++||+|+ ||||.+++ .+.+++.
T Consensus 282 lAall~~--~~~~~~~~~Vv~il-sGGnid~~--~~~~i~~ 317 (403)
T PRK08526 282 VAALLHQ--KIDLKKGKKIGVVL-SGGNIDVQ--MLNIIIE 317 (403)
T ss_pred HHHHHhC--ccccccCCeEEEEE-CCCCCCHH--HHHHHHH
Confidence 9998752 222 3578999999 99996555 5555544
|
|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=364.76 Aligned_cols=255 Identities=22% Similarity=0.321 Sum_probs=219.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++.. ++||++|+||||+++|++|+++|++|+||||+.+++.|+++++.|||+|++++. ++
T Consensus 31 K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 104 (380)
T TIGR01127 31 KIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD--DY 104 (380)
T ss_pred HHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC--CH
Confidence 799999999999988863 359999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|+.+|++|||||
T Consensus 105 ~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigV 181 (380)
T TIGR01127 105 DEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDI-PDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGV 181 (380)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhC-CCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 182 e~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~ 261 (380)
T TIGR01127 182 EAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAG 261 (380)
T ss_pred EECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHH
Confidence 999997653 2332 234456666432 2334556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
++++++.... .++++||+|+ +||+.+.| +|+.++..
T Consensus 262 laa~~~~~~~--~~~~~vv~i~-sGGn~d~d--~l~~vi~~ 297 (380)
T TIGR01127 262 VAALLEQKVD--VKGKKIAVVL-SGGNIDLN--LLNKIIEK 297 (380)
T ss_pred HHHHHhCccc--cCCCeEEEEe-CCCCCCHH--HHHHHHHH
Confidence 9999864321 3678999999 78995544 66665443
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=352.67 Aligned_cols=247 Identities=23% Similarity=0.268 Sum_probs=214.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.++|.. +.||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +|
T Consensus 64 K~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~ 137 (349)
T PRK08813 64 KVRGALNALLAGLERGDE----RPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SY 137 (349)
T ss_pred HHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 899999999999999874 249999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|. ||+||+|+|+||+++|++.++|+ +.+|||||
T Consensus 138 ~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigV 210 (349)
T PRK08813 138 DEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGA 210 (349)
T ss_pred HHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEE
Confidence 99999999999886 8899999999998 899999999999874 79999999999999999999996 46899999
Q ss_pred ecCCCCccC---CCC-----CCCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHH
Q 023801 161 EPTESPVLS---GGK-----PGPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 229 (277)
Q Consensus 161 ~~~~~~~~~---~~~-----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~al 229 (277)
||++++++. .++ +..+.++|++.. ..++.+..+++|+++.|+|+|+.++++.|++++|+++||++|+++
T Consensus 211 qpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~al 290 (349)
T PRK08813 211 QVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALAL 290 (349)
T ss_pred EECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHH
Confidence 999987642 122 123556777643 234455678899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 230 AAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 230 aa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
++++++ ++++|++|+ +|||.+++ .+.+++..
T Consensus 291 Aa~~~~------~~~~v~~vl-sGgN~d~~--~~~~~~~~ 321 (349)
T PRK08813 291 AAGRRV------SGKRKCAVV-SGGNIDAT--VLATLLSE 321 (349)
T ss_pred HHHHHh------CCCCEEEEE-CCCCCCHH--HHHHHHHh
Confidence 998753 457899999 99995544 66666553
|
|
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=355.05 Aligned_cols=247 Identities=19% Similarity=0.208 Sum_probs=215.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++..+|.+++++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 88 KdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~ 160 (347)
T PRK08329 88 KDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DR 160 (347)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999986 46
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC------CC
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN------PN 154 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~------~~ 154 (277)
+++.+.+.+++++. +++|++++.||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++|+++. +.
T Consensus 161 ~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~ 237 (347)
T PRK08329 161 MEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKM 237 (347)
T ss_pred HHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 77778888888775 6788999999998 8999999999999995 89999999999999999999999863 56
Q ss_pred cEEEEEecCCCCccCC-CCCCCcccCccCCCCCcc-----CccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 155 IKLYGIEPTESPVLSG-GKPGPHKIQGIGAGFVPG-----VLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
+||++||+++++++.. .+...+.+++++.+..+. .+.+++.+.++.|+|+|++++++.|++ +||++||+||++
T Consensus 238 p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a 316 (347)
T PRK08329 238 PKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVA 316 (347)
T ss_pred CEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHH
Confidence 8999999999876643 223445667777654332 233566778999999999999999986 799999999999
Q ss_pred HHHHHHHHhcCC-CCCCeEEEEecCCCCCCc
Q 023801 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 229 laa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 258 (277)
+++++++.+++. .++++||+++|++|.|++
T Consensus 317 ~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 317 LAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 999999999876 478899999988888875
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=365.11 Aligned_cols=257 Identities=24% Similarity=0.318 Sum_probs=217.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++..+.+.+. .+ .||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+++++ ++
T Consensus 56 K~Rga~~~i~~~~~~~~-~~---gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~ 129 (406)
T PRK06382 56 KSRGAVFKFSKLSEDEL-RN---GVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DY 129 (406)
T ss_pred HHHHHHHHHHhcchhcc-CC---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CH
Confidence 79999999999887653 33 49999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+|++|||||
T Consensus 130 ~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigV 206 (406)
T PRK06382 130 DEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGI 206 (406)
T ss_pred HHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 89999999998886 7899999999988 889999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++.+. .++.+..+++|+++.|+|+|++++++.|++++|+++||++|++
T Consensus 207 e~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~ 286 (406)
T PRK06382 207 ESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVG 286 (406)
T ss_pred EECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHH
Confidence 999998752 3332 234567777643 2334556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCc---chhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYL---SSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~---~~~~~~~~~~~ 269 (277)
+++++.. +. ..++++||+|+ +||+.++ +..+.+.|...
T Consensus 287 laal~~~-~~-~~~~~~Vv~i~-sGGn~d~~~~~~~~~~~~~~~ 327 (406)
T PRK06382 287 LAAIMEG-KV-DVKGKKVAIVV-SGGNINPLLMSKIIYKELENL 327 (406)
T ss_pred HHHHHhc-cc-cCCCCEEEEEe-CCCCCCHHHHHHHHHHHHHhc
Confidence 9877542 21 13577899999 8999543 33444444333
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=369.25 Aligned_cols=258 Identities=23% Similarity=0.307 Sum_probs=221.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+... + +.||++|+||||+++|++|+++|++|+||||+++|..|++.++.|||+|+.+++ +|
T Consensus 51 K~RgA~n~i~~l~~~~~-~---~gvV~aSaGNha~avA~aa~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~ 124 (504)
T PRK09224 51 KLRGAYNKMAQLTEEQL-A---RGVITASAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SF 124 (504)
T ss_pred hHHHHHHHHHhhhHHhc-C---CEEEEECcCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 89999999998764321 2 469999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|++..||+||+|+|||||++|++.++|...|++|||||
T Consensus 125 ~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigV 202 (504)
T PRK09224 125 DEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGV 202 (504)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998885 7899999999998 899999999999999655999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+.++|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 203 e~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~ 282 (504)
T PRK09224 203 EPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALA 282 (504)
T ss_pred EECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHH
Confidence 999998763 23321 23346665433 2344567899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++.++...++++||+|+ +|||-+++ .++++.+.
T Consensus 283 lAal~~~~~~~~~~g~~vv~i~-sG~n~~~~--~l~~~~~r 320 (504)
T PRK09224 283 LAGLKKYVAQHGIEGETLVAIL-SGANMNFD--RLRYVAER 320 (504)
T ss_pred HHHHHHhhhhcCCCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999998877655688999999 88995555 55554443
|
|
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=354.16 Aligned_cols=249 Identities=20% Similarity=0.232 Sum_probs=210.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+++. .++||++|+||||+|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ ++
T Consensus 58 KdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~ 131 (328)
T PLN02970 58 KFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TV 131 (328)
T ss_pred HHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CH
Confidence 89999999999986554 1469999999999999999999999999999999999999999999999999995 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+.+.+.+++++++. +++|++||+||.+ ++||+|+++||++|++ .||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 132 ~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 132 ESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 88888898888774 8899999999988 7899999999999994 7999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCC--CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAG--FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 229 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~--~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~al 229 (277)
||++++++. .+++ ..+..++++.+ ..++....+.+|+++.|+|+|++++++.|++++|+++||++|+++
T Consensus 209 ep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~l 288 (328)
T PLN02970 209 EPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGL 288 (328)
T ss_pred EECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHH
Confidence 999997653 2221 22344555432 112334467789999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CC-CC-CCeEEEEecCCCCCCcc
Q 023801 230 AAAIEIAKR-PE-NA-GKLIVVIFPSFGERYLS 259 (277)
Q Consensus 230 aa~~~~~~~-~~-~~-~~~vv~i~~~gG~~~~~ 259 (277)
+++++...+ +. .+ +++||+++ ||||.+++
T Consensus 289 aaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~ 320 (328)
T PLN02970 289 AAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLG 320 (328)
T ss_pred HHHHhCcccccccccCCCeEEEEE-CCCCCCHH
Confidence 998764332 22 23 47888888 88996655
|
|
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=356.71 Aligned_cols=251 Identities=21% Similarity=0.264 Sum_probs=211.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.++|.+++++|. ++||++|+||||+|+|++|+++|++|+||||++ .++.|+.+++.|||+|+.+++ +
T Consensus 59 KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~ 131 (351)
T PRK06352 59 KDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--N 131 (351)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--C
Confidence 89999999999999886 579999999999999999999999999999997 589999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCC-----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN----- 154 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~----- 154 (277)
++++.+.+++++++. ++++++ +.||.+ ++||+|+++||++|++..||+||+|+|+||+++|++++|+++++.
T Consensus 132 ~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~ 208 (351)
T PRK06352 132 FDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGL 208 (351)
T ss_pred HHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCC
Confidence 788888999988875 666665 458888 789999999999999767999999999999999999999998776
Q ss_pred cEEEEEecCCCCccCCCCCCC---cccCccCCCC-CccCccccc----cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 155 IKLYGIEPTESPVLSGGKPGP---HKIQGIGAGF-VPGVLEVNI----IDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~~~~~~---~~~~gl~~~~-~~~~~~~~~----~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
+|||+|||++++++..+++.. +..+++..+. ..+.+.... .+.++.|+|+|++++++.|++++||++||+||
T Consensus 209 ~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssa 288 (351)
T PRK06352 209 PRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSA 288 (351)
T ss_pred CEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHH
Confidence 899999999997665544421 2223433221 111122222 33589999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 227 GAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 227 ~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+++++++++++++. .++++||+++|++|+||+++.
T Consensus 289 aalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 289 ASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 99999999887644 467899999988899999875
|
|
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=351.68 Aligned_cols=252 Identities=22% Similarity=0.295 Sum_probs=213.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.+++. .++||++|+||||+|+|++|+.+|++|++|||+++++.|+.+++.|||+|+.+++ ++
T Consensus 55 K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~ 128 (321)
T PRK07048 55 KFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YT 128 (321)
T ss_pred eHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 89999999999886443 1459999999999999999999999999999999999999999999999999995 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|+ +.||+||+|+|+||+++|++.++|+.+|+++||+|
T Consensus 129 ~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~-~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigv 205 (321)
T PRK07048 129 EDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGCALAARALSPGCKVYGV 205 (321)
T ss_pred HHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhc-CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 77888888888886 7899999999988 799999999999999 48999999999999999999999999999999999
Q ss_pred ecCCCCcc----CCCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVL----SGGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~----~~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++ ..++. ..+..+++.... ..+.+..+++|+++.|+|+|++++++.|++++|+++||+++++
T Consensus 206 ep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~ 285 (321)
T PRK07048 206 EPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLG 285 (321)
T ss_pred eeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHH
Confidence 99998753 22322 122334443211 1223345789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
+++++++.++ .++++||+|+ |||+.+++ .|.++
T Consensus 286 laa~~~~~~~--~~~~~vv~i~-tGGn~~~~--~~~~~ 318 (321)
T PRK07048 286 AAAALRGKVP--LKGKRVGVII-SGGNVDLA--RFAAL 318 (321)
T ss_pred HHHHHhCchh--cCCCeEEEEe-CCCCCCHH--HHHHH
Confidence 9999986554 3678999999 78997655 44443
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=349.94 Aligned_cols=254 Identities=23% Similarity=0.299 Sum_probs=212.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.+.... ++||++|+||||+|+|++|+.+|++|+||||++.++.|+.+++.|||+|+.+++ ++
T Consensus 58 KdR~a~~~i~~~~~~~~~----~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 131 (333)
T PRK08638 58 KIRGAFNKLSSLTDAEKR----KGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NF 131 (333)
T ss_pred HHHHHHHHHHhccHHhcC----CeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CH
Confidence 899999999998764331 469999999999999999999999999999999999999999999999999984 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+++++||++|+ ++||+||+|+|+||+++|++.+||+.+|++|||+|
T Consensus 132 ~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigV 208 (333)
T PRK08638 132 NDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGV 208 (333)
T ss_pred HHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88889999998886 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCCC-----cccCccCCCCCccCc----cccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKPGP-----HKIQGIGAGFVPGVL----EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~~-----~~~~gl~~~~~~~~~----~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+++.. +..++++.. .|..+ ..+++|+++.|+|+|+++++++|++++|+++||++|+
T Consensus 209 ep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~-~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~ 287 (333)
T PRK08638 209 QSENVHGMAASFYAGEITTHRTTGTLADGCDVS-RPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGAL 287 (333)
T ss_pred EECCCchHHHHHHCCCcccCCCCCCeeccccCC-CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHH
Confidence 999987543 333322 223444332 23322 2478999999999999999999999999999999888
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
+++++.........++++||+|+ +|||.+++ .|.+++
T Consensus 288 ~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~--~~~~~~ 324 (333)
T PRK08638 288 ATAALLSGKLDQYIQNKKVVAII-SGGNVDLS--RVSQIT 324 (333)
T ss_pred HHHHHHhCCcccccCCCcEEEEE-CCCCCCHH--HHHHHH
Confidence 88776643222224678899999 78998877 555554
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=362.21 Aligned_cols=257 Identities=23% Similarity=0.321 Sum_probs=216.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC-CCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD-PAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~-~~~~ 79 (277)
|||+|.++|.++.+ +... +.||++|+||||+++|++|+++|++|+||||+.+++.|+..++.|||+|+.+. ...+
T Consensus 56 K~RgA~~~i~~l~~-~~~~---~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~ 131 (420)
T PRK08639 56 KLRGAYNAISQLSD-EELA---AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDT 131 (420)
T ss_pred HHHHHHHHHHhCCH-HhhC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcC
Confidence 89999999998532 3322 46999999999999999999999999999999999999999999999754332 1147
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC--CCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~--~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
++++++.+.+++++. +++|++||+||.+ ++||+|+|+||++|+++. ||+||+|+|+||+++|++.++|+.+|++||
T Consensus 132 ~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~v 209 (420)
T PRK08639 132 FDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKI 209 (420)
T ss_pred HHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEE
Confidence 899999999998886 7899999999988 799999999999999655 999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|||||++++++. .+++ ..+.++|++.... ++.+..+++|+++.|+|+|+.++++.|++++|+++||++
T Consensus 210 igVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sg 289 (420)
T PRK08639 210 IGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAG 289 (420)
T ss_pred EEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 999999998763 2332 2345677765433 334557789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
|+++++++++.+. .++++||+|+ |||+.+++ .+.+++.
T Consensus 290 a~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~--~~~~~~~ 327 (420)
T PRK08639 290 ALSIAALELYKDE--IKGKTVVCVI-SGGNNDIE--RMPEIKE 327 (420)
T ss_pred HHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHH--HHHHHHH
Confidence 9999999886543 4788999999 89996655 5555543
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=349.28 Aligned_cols=256 Identities=20% Similarity=0.262 Sum_probs=215.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.. +.||++|+||||+|+|++|+++|++|+||||+.+++.|+.+|+.|||+|+.+++ ++
T Consensus 50 K~R~a~~~i~~a~~~~~~----~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~ 123 (322)
T PRK07476 50 KLRGATNALLSLSAQERA----RGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQ 123 (322)
T ss_pred hHHHHHHHHHhhhhhhhC----CeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 899999999999998872 349999999999999999999999999999999999999999999999999985 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||..+|++|||+|
T Consensus 124 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~-~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigV 200 (322)
T PRK07476 124 DDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEAL-PDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGV 200 (322)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhC-cCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888899988876 7799999999998 799999999999999 47999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCC-----CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAG-----FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~-----~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
||++++++. .+++ ..+..++++.+ ..+..+....+|+++.|+|+|++++++.|++++|+++||+++
T Consensus 201 e~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a 280 (322)
T PRK07476 201 SMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGA 280 (322)
T ss_pred EECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhH
Confidence 999887543 2222 22334554322 123345567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhh
Q 023801 227 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 270 (277)
Q Consensus 227 ~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 270 (277)
++++++++. .....+++||+++ |||+- |...|++++.+.
T Consensus 281 ~~laal~~~--~~~~~~~~Vvvi~-tGg~~--~~~~~~~~~~~~ 319 (322)
T PRK07476 281 VGIAALLAG--KIAARDGPIVVVV-SGANI--DMELHRRIINGE 319 (322)
T ss_pred HHHHHHHhC--CcccCCCcEEEEE-CCCCC--CHHHHHHHHhhh
Confidence 999998832 1112347899999 78884 555777776654
|
|
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=358.15 Aligned_cols=263 Identities=21% Similarity=0.235 Sum_probs=218.2
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|+++|.. ++++|.+.|+. ++||++||||||+|+|++|+.+|++|+||||+++++.
T Consensus 115 K~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~ 194 (441)
T PRK02991 115 KARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQW 194 (441)
T ss_pred HHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 79999999986 56889888774 3699999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~i 131 (277)
|+++++.|||+|+.+++ +|+++.+.+++++++.++++|++++++|.+ ++||+|+++||++|+++ .||+|
T Consensus 195 K~~~ir~~GAeVi~~~~--~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~V 271 (441)
T PRK02991 195 KKDKLRSHGVTVVEYEG--DYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFV 271 (441)
T ss_pred HHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEE
Confidence 99999999999999995 789999999999888766899999987776 89999999999999952 26799
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCCC-----------CCcccCccCCCCC---ccCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~ 192 (277)
|+|+|+||+++|++.+||+. .+.+|||+|||++++++. .+++ ..+.++|++.+.. ++.+..
T Consensus 272 vvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~ 351 (441)
T PRK02991 272 YLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME 351 (441)
T ss_pred EEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHH
Confidence 99999999999999999997 688999999999987652 2221 1245677766532 234456
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC-------C---CCCeEEEEecCCCC-CCcchh
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE-------N---AGKLIVVIFPSFGE-RYLSSV 261 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~-------~---~~~~vv~i~~~gG~-~~~~~~ 261 (277)
+++|+++.|+|+|++++++.|++++|+++||++|+++++++++.+... . ++++||++. |||+ ++.+
T Consensus 352 ~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~gg~~~~~~-- 428 (441)
T PRK02991 352 RLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TGGSMVPEE-- 428 (441)
T ss_pred HhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CCCCCCCHH--
Confidence 789999999999999999999999999999999999999987654321 1 467888888 5554 3333
Q ss_pred ccHHHHHh
Q 023801 262 LFESVRKE 269 (277)
Q Consensus 262 ~~~~~~~~ 269 (277)
..+.+...
T Consensus 429 ~~~~~~~~ 436 (441)
T PRK02991 429 EMEQYLAK 436 (441)
T ss_pred HHHHHHHh
Confidence 44444443
|
|
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=357.14 Aligned_cols=251 Identities=24% Similarity=0.230 Sum_probs=216.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|+++|. ++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 111 KdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~ 183 (394)
T PRK08197 111 KARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDG--LI 183 (394)
T ss_pred HHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999887 679999999999999999999999999999999999999999999999999996 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhc-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK-------N 152 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~-------~ 152 (277)
+++.+.+.+++++. ++++++++.||.+ ++|++|+++||++|++. .||+||+|+|+||+++|++++|+++ .
T Consensus 184 ~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~ 261 (394)
T PRK08197 184 SDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGG 261 (394)
T ss_pred HHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCC
Confidence 88888888888776 7899999999998 89999999999999965 4999999999999999999999986 3
Q ss_pred CCcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCcc--C---ccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPG--V---LEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~--~---~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
+.+||++||+++++++. .++. ..+..+++..+.... . ...++.+.++.|+|+|++++++.|+++
T Consensus 262 ~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~ 341 (394)
T PRK08197 262 KRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELARE 341 (394)
T ss_pred CCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhc
Confidence 88999999999997653 1211 112234443322111 1 123566789999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
+||++||+||+++++++++.+++. .++++||+++|++|.||+++
T Consensus 342 eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 342 EGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred CCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 999999999999999999988765 36789999999999999874
|
|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=360.05 Aligned_cols=256 Identities=21% Similarity=0.294 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE---EEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v---~~~~~~ 77 (277)
|||+|.++|.++.+ +..+ +.||++|+||||+++|++|+++|++|+||||+.+++.|+.+++.|||++ +..+
T Consensus 47 K~RgA~~~i~~l~~-~~~~---~gvv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g-- 120 (409)
T TIGR02079 47 KIRGAYNFLKQLSD-AQLA---KGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG-- 120 (409)
T ss_pred HHHHHHHHHHhCCH-HhhC---CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--
Confidence 79999999987543 2333 3599999999999999999999999999999999999999999999974 3444
Q ss_pred CChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 78 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
.+|+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+|++||
T Consensus 121 ~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~v 198 (409)
T TIGR02079 121 DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKI 198 (409)
T ss_pred CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEE
Confidence 47899999999998886 7899999999988 889999999999999656999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC-----CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 158 YGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
|||||++++++. .+++ ..+.++|++....+ +.+...++|+++.|+|+|+.++++.|++++|+++||++
T Consensus 199 igVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~ag 278 (409)
T TIGR02079 199 IGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAG 278 (409)
T ss_pred EEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchH
Confidence 999999998764 2332 13456677654432 23456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
|+++++++++.++ .++++||+|+ +|||.+++ .+.+++..
T Consensus 279 aa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~--~~~~~~~~ 317 (409)
T TIGR02079 279 ALSIAALERLGEE--IKGKTVVCVV-SGGNNDIE--RTEEIRER 317 (409)
T ss_pred HHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHH--HHHHHHHH
Confidence 9999999886543 4688999999 89996554 55555443
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=360.61 Aligned_cols=247 Identities=25% Similarity=0.372 Sum_probs=215.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++. .++||++|+||||+++|++|+++|++|+||||++++..|+++++.|||+|+.++. ++
T Consensus 53 K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~ 126 (404)
T PRK08198 53 KIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VY 126 (404)
T ss_pred HHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CH
Confidence 89999999999986654 2579999999999999999999999999999999999999999999999999984 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+|+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||||
T Consensus 127 ~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigV 203 (404)
T PRK08198 127 DEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGV 203 (404)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999988 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+..+|++... .++.+..+++|+++.|+|+|+.++++.|++++|+++||++|++
T Consensus 204 e~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~ 283 (404)
T PRK08198 204 QAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVS 283 (404)
T ss_pred EeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHH
Confidence 999998763 2332 123345554322 2344556889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+++++++.+. .++++||+|+ +||+.+++
T Consensus 284 lAal~~~~~~--~~~~~vv~vl-~ggn~~~~ 311 (404)
T PRK08198 284 VAALLSGKLD--VKGKKVVAVL-SGGNIDVL 311 (404)
T ss_pred HHHHHhchhh--cCCCeEEEEE-CCCCCCHH
Confidence 9999876532 4678999999 78997665
|
|
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=350.03 Aligned_cols=254 Identities=23% Similarity=0.288 Sum_probs=216.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++++++...+ .||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ ++
T Consensus 52 K~Rga~~~l~~a~~~~~~~~---~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~ 126 (322)
T PRK06110 52 KVRGGLVYFDRLARRGPRVR---GVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DF 126 (322)
T ss_pred HHHHHHHHHHHhhhhcCCCc---eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999998876554 49999999999999999999999999999999999999999999999999974 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++++++ +++|++|| ||.+ +.||+|+++||++|++ .+|+||+|+|+||+++|++.++++.+|++|||+|
T Consensus 127 ~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~V 202 (322)
T PRK06110 127 QAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGV 202 (322)
T ss_pred HHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888999988886 78999999 5666 7899999999999994 7999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCCC-c--cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGFV-P--GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++. .+..++++.... + +.+..+++|+++.|+|+|++++++.|++++|+++||+++++
T Consensus 203 ep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~ 282 (322)
T PRK06110 203 VSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAA 282 (322)
T ss_pred eeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHH
Confidence 999987653 23221 234455543321 1 22335789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++++.+. .++++||+|+ |||+.+++ .|.+++.
T Consensus 283 laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~--~~~~~~~ 317 (322)
T PRK06110 283 LAAALQERER--LAGKRVGLVL-SGGNIDRA--VFARVLA 317 (322)
T ss_pred HHHHHhChhh--hCCCcEEEEE-CCCCCCHH--HHHHHHh
Confidence 9999986554 3678899999 88996655 6666654
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=350.18 Aligned_cols=255 Identities=19% Similarity=0.168 Sum_probs=212.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|.+. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.++. .
T Consensus 54 K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~ 127 (338)
T PRK06608 54 KVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---R 127 (338)
T ss_pred HHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---H
Confidence 8999999999999999864 469999999999999999999999999999999999999999999999999974 3
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++ +++ +++||++||+|+.+ ++||++++.||++|++.+||+||+|+|+||+++|++.+++..++.++||+|
T Consensus 128 ~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigV 204 (338)
T PRK06608 128 QEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGS 204 (338)
T ss_pred HHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEE
Confidence 566677766 444 47899999999988 789999999999999658999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC------CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKP------GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~------~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||.+++++. .+++ ..+..+|++.+... +.+. +.+|+++.|+|+|++++++.|++++|+++||+||+
T Consensus 205 ep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa 283 (338)
T PRK06608 205 EPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAI 283 (338)
T ss_pred eeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHH
Confidence 999987542 2321 13445677653321 2222 34789999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCC---CcchhccHHHH
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGER---YLSSVLFESVR 267 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~---~~~~~~~~~~~ 267 (277)
+++++++++++. .++++||+|+ +||++ |+++.+.++|+
T Consensus 284 ~laa~~~~~~~~-~~~~~Vv~v~-tgg~~d~~~~~~~~~~~~~ 324 (338)
T PRK06608 284 NMVAVVNWLKTQ-SKPQKLLVIL-SGGNIDPILYNELWKEDYL 324 (338)
T ss_pred HHHHHHhhchhh-cCCCeEEEEe-CCCccCHHHHHHHHHHhhh
Confidence 999999886653 3678999999 56764 44444444443
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=357.35 Aligned_cols=252 Identities=19% Similarity=0.229 Sum_probs=217.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|+++|. ++|+++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ +|
T Consensus 121 KdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~ 193 (421)
T PRK07591 121 KDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NY 193 (421)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999996 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC-CCEEEEecCCchhHHHHHHHHhhc-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEK-------N 152 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~-------~ 152 (277)
+++.+.+.+++++.+++++++++.||.. ++||+|+++||++|++.. ||+||+|+|+||+++|++++|+++ .
T Consensus 194 d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~ 272 (421)
T PRK07591 194 DDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVED 272 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccC
Confidence 8899999998887767899999888888 799999999999999654 999999999999999999999997 5
Q ss_pred CCcEEEEEecCCCCccC----CCCC------CCcccCccCCCCCc-----cCccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
+.+||++|||++++++. .+.. ..+..+++..+... ....+++.+.++.|+|+|++++++.|++.+
T Consensus 273 ~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~e 352 (421)
T PRK07591 273 KPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTE 352 (421)
T ss_pred CCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcC
Confidence 78999999999986653 2221 12233444332211 112346677899999999999999999999
Q ss_pred CCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 218 GLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 218 gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
||++||++|+++++++++.+++. .++++||+++|++|+||++.
T Consensus 353 Gi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~ 396 (421)
T PRK07591 353 GIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEA 396 (421)
T ss_pred CeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHH
Confidence 99999999999999999988776 47889999996679999874
|
|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=357.74 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=218.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.++.. . +.||++|+||||+|+|++|+++|++|+||||..+++.|+.+++.|||+|+.+++ ++
T Consensus 54 KdR~a~~~i~~~~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~ 127 (403)
T PRK07334 54 KERGALNKLLLLTEEER-A---RGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TL 127 (403)
T ss_pred hHHHHHHHHHhcCHHHh-C---CcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CH
Confidence 89999999999875432 1 359999999999999999999999999999999999999999999999999984 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ ++||+|+++||++|+ +.||+||+|+|+||+++|+++++|+.+|++||++|
T Consensus 128 ~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 128 DEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999998875 7899999999998 799999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccCC---CC----CCCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHH
Q 023801 161 EPTESPVLSG---GK----PGPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230 (277)
Q Consensus 161 ~~~~~~~~~~---~~----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ala 230 (277)
||++++++.. +. ...+.++|++.+ ..++.++..++|+++.|+|+|++++++.|++++|+++||++|++++
T Consensus 205 e~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~a 284 (403)
T PRK07334 205 QTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLA 284 (403)
T ss_pred EECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHH
Confidence 9999877631 11 123566787743 3455667788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 231 AAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 231 a~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++.++ .++++||+|+ +||+.+.+ ++.+++.
T Consensus 285 a~~~~~~~--~~~~~vv~i~-~ggn~d~~--~l~~il~ 317 (403)
T PRK07334 285 ALLAYPER--FRGRKVGLVL-SGGNIDTR--LLANVLL 317 (403)
T ss_pred HHHhCchh--cCCCeEEEEE-CCCCCCHH--HHHHHHH
Confidence 99876553 3678999999 66885444 5555543
|
|
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=347.91 Aligned_cols=255 Identities=22% Similarity=0.247 Sum_probs=214.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.+++.++.++|. ++||++||||||+|+|++|+++|++|+||||+.. ++.|+++++.+||+|+.+++ +
T Consensus 59 KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~ 131 (352)
T PRK06721 59 KDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--N 131 (352)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999999986 6799999999999999999999999999999975 78999999999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHH----HhhcC-CC
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKF----LKEKN-PN 154 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~----~~~~~-~~ 154 (277)
++++.+.+++++++. ++++++ +.||.+ ++||.|+++||++|+++.||+||+|+|+||+++|++.+ +|+.+ |.
T Consensus 132 ~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~ 208 (352)
T PRK06721 132 FDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKK 208 (352)
T ss_pred HHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCC
Confidence 888888999998886 566665 558887 78999999999999966799999999999999986544 45554 88
Q ss_pred cEEEEEecCCCCccCCCCCC---CcccCccCCCCCccC------ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 155 IKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 155 ~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
++||+|||++++++..++.. .+..++++.+. |.. ....++|+++.|+|+|++++++.|+++||+++||++
T Consensus 209 ~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~-~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepss 287 (352)
T PRK06721 209 PRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGN-PASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGS 287 (352)
T ss_pred CeEEEEecCCCChHhhCCcCCCCCceeeccccCC-CCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchH
Confidence 99999999999877554321 23345554432 211 124578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchhccHHH
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
|+++++++++.+++. .++++||+|+|++|.||++....+.|
T Consensus 288 gaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~~~~~ 329 (352)
T PRK06721 288 NASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNT 329 (352)
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHhhhcc
Confidence 999999999887654 46789999999999999987654433
|
|
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=344.31 Aligned_cols=252 Identities=20% Similarity=0.236 Sum_probs=211.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++.+... . .+||++|+||||+|+|++|+++|++|+||||+.+++.|+++++.|||+|+.++. ++
T Consensus 50 K~R~a~~~i~~~~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 123 (317)
T TIGR02991 50 KLRGATNAVLSLSDTQR-A---AGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQ 123 (317)
T ss_pred HHHHHHHHHHhhhHhcc-C---CeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 89999999998875322 1 469999999999999999999999999999999999999999999999999995 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +++|+||+|+|+||+++|++++||+.+|.+|||+|
T Consensus 124 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigv 200 (317)
T TIGR02991 124 DDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGV 200 (317)
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888876 7899999999998 799999999999999 46899999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccC----C-CCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIG----A-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSG 226 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg 226 (277)
||++++++. .+++ .++.+++++ . +..++.+..+++|+++.|+|+|++++++.|++++|+++||+++
T Consensus 201 ep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a 280 (317)
T TIGR02991 201 SMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGA 280 (317)
T ss_pred EECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHH
Confidence 999887653 2322 233455442 1 1234556678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 227 GAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 227 ~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
++++++++... .++++||+|+ |||+.+ ...+.+++
T Consensus 281 ~~~Aal~~~~~---~~~~~vvvvl-tG~n~~--~~~~~~~~ 315 (317)
T TIGR02991 281 VGIAALLAGKI---KNPGPCAVIV-SGRNID--MDLHKRII 315 (317)
T ss_pred HHHHHHHcCcc---ccCCcEEEEe-CCCCCC--HHHHHHHH
Confidence 99999874211 2467888888 888844 44555543
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=344.06 Aligned_cols=244 Identities=26% Similarity=0.341 Sum_probs=208.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.++.. . +.||++|+||||+|+|++|+++|++|+||||..+++.|+.+++.+||+|+.+++ ++
T Consensus 51 KdR~a~~~~~~l~~~~~-~---~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 124 (317)
T PRK06815 51 KFRGASNKLRLLNEAQR-Q---QGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DA 124 (317)
T ss_pred HHHHHHHHHHhcchhhc-C---ceEEEECCChHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 89999999997654321 2 459999999999999999999999999999999999999999999999999996 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++. +++|++||+||.+ +.||+++++||++|++ .||+||+|+|+||+++|++.++++.+|++|||||
T Consensus 125 ~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigV 201 (317)
T PRK06815 125 LNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGC 201 (317)
T ss_pred HHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88888888888775 7889999999987 7899999999999994 6999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCCc----cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFVP----GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
||++++++. .+++ ..+.+++++.+..+ +.+..+++|+++.|+|+|++++++.|++++||++||++|+
T Consensus 202 ep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~ 281 (317)
T PRK06815 202 WPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGV 281 (317)
T ss_pred EeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHH
Confidence 999998663 2222 12345565433222 2345678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
++++++++.++ .++++||+|+ +||+.
T Consensus 282 alaa~~~~~~~--~~~~~vv~i~-tG~~~ 307 (317)
T PRK06815 282 ALAAALKLAPR--YQGKKVAVVL-CGKNI 307 (317)
T ss_pred HHHHHHhCchh--cCCCcEEEEE-CCCCC
Confidence 99999987665 3678999999 55663
|
|
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=346.23 Aligned_cols=250 Identities=21% Similarity=0.264 Sum_probs=212.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.+++.+++++|. ++||++||||||+++|++|+.+|++|+||||++ .++.|+++++.|||+|+.+++ +
T Consensus 62 KdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~ 134 (353)
T PRK07409 62 KDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--N 134 (353)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--C
Confidence 89999999999999886 579999999999999999999999999999998 588999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
++++.+.++++++++ +++++++ .||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.+|++..+
T Consensus 135 ~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~ 211 (353)
T PRK07409 135 FDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTK 211 (353)
T ss_pred HHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccC
Confidence 888989999988877 4677765 58888 78999999999999966799999999999999999999998643
Q ss_pred CcEEEEEecCCCCccCCCCCC---CcccCccCCCCCccCc------cccccCeEEEeCHHHHHHHHHHHHHHcCCeeecc
Q 023801 154 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 224 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~ 224 (277)
.+|||+|||.+++++..+++. .+..++++.+. |..+ ..++.++++.|+|+|++++++.|++++|+++||+
T Consensus 212 ~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~ps 290 (353)
T PRK07409 212 LPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPA 290 (353)
T ss_pred CCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCch
Confidence 489999999998777544432 22334554332 2221 2345568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 225 SGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 225 sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+|+++++++++.+++. .++++||+|+|++|+||+++.
T Consensus 291 sa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 291 SAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 9999999999887653 467899999977899999864
|
|
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=333.54 Aligned_cols=250 Identities=24% Similarity=0.269 Sum_probs=222.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|.|+|.+++.+.-++++ + ..|+++|.||||+|+|++|+++|+|++||||..+|..|++.++.+||+|++.+. ++
T Consensus 97 K~RGa~~~~~kla~~~~-~---~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~ 170 (457)
T KOG1250|consen 97 KIRGAGNALQKLAKQQK-K---AGVIASSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DW 170 (457)
T ss_pred ehhhHHHHHHHHHHhhh-c---CceEEecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cH
Confidence 67999999999888775 3 459999999999999999999999999999999999999999999999999984 89
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++...|.++++++ ++.|++|||+|+. ++|++|++.||.+|+...+++|+||||+||+++||+.+++...|+++||||
T Consensus 171 deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGV 248 (457)
T KOG1250|consen 171 DEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGV 248 (457)
T ss_pred HHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEE
Confidence 99999999999998 8999999999999 899999999999999666679999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCCC-----CcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPG-----PHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
|+++|.++. .+++. .+.++|++...+ ++.+.+.++|+++.|+|+|+..++.++.++|..++||++|++
T Consensus 249 Et~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaa 328 (457)
T KOG1250|consen 249 ETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAA 328 (457)
T ss_pred eecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHH
Confidence 999998664 34432 245677776543 445668899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++++... +....+++++|.++ +|++-.+|.
T Consensus 329 Laai~~~-~~~~lk~~~vv~il-sG~n~~~~~ 358 (457)
T KOG1250|consen 329 LAAIYSG-KLNHLKGKKVVSIL-SGGNIDFDS 358 (457)
T ss_pred HHHHHhc-cccccCCceEEeec-ccCCCCccc
Confidence 9999887 44457899999999 888855553
|
|
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=339.79 Aligned_cols=244 Identities=23% Similarity=0.315 Sum_probs=206.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+ + + ++||++|+||||+|+|++|+++|++|+||||+.+++.|+.+++.|||+|+.+++ ++
T Consensus 53 K~R~a~~~~~~~~~-~----~-~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 124 (310)
T PRK08246 53 KARGAFNRLLAAPV-P----A-AGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EY 124 (310)
T ss_pred HHHHHHHHHHhhcc-c----C-CeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CH
Confidence 89999999998765 2 2 579999999999999999999999999999999999999999999999999985 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++++.+.+++++. +++|++||+||.+ +.||+|+++||++|+ +.||+||+|+|+||+++|++.+|+. .+||++|
T Consensus 125 ~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~v 198 (310)
T PRK08246 125 ADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAV 198 (310)
T ss_pred HHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEE
Confidence 88888888888876 7899999999998 789999999999999 5799999999999999999999975 4899999
Q ss_pred ecCCCCccC----CCCCCCcc-----cCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKPGPHK-----IQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~-----~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++.... .++++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||++|++
T Consensus 199 e~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~ 278 (310)
T PRK08246 199 EPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATA 278 (310)
T ss_pred eeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHH
Confidence 999998653 23433222 233443332 334667789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++++++..++ ..++++||+|+ +||+.++++
T Consensus 279 lAa~~~~~~~-~~~~~~vv~i~-~g~n~d~~~ 308 (310)
T PRK08246 279 LAALLSGAYV-PAPGERVAVVL-CGANTDPAT 308 (310)
T ss_pred HHHHHhCCcc-ccCCCeEEEEE-CCCCCChhh
Confidence 9998754322 13677899999 888876653
|
|
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=337.94 Aligned_cols=247 Identities=24% Similarity=0.274 Sum_probs=212.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|. ++||++|+||||+|+|++|+.+|++|++|||+++++.|+++|+.+||+|+.++. ++
T Consensus 54 K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~ 126 (324)
T cd01563 54 KDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NF 126 (324)
T ss_pred HHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cH
Confidence 89999999999999885 679999999999999999999999999999999999999999999999999986 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcC------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------P 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~------~ 153 (277)
+++.+.+.+++++. ++|++||+||.+ +.||.++++||++|+++ .||+||+|+|+||+++|++.+++... +
T Consensus 127 ~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~ 203 (324)
T cd01563 127 DDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDR 203 (324)
T ss_pred HHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCcccc
Confidence 88888888888775 789999999998 78999999999999963 69999999999999999999999875 5
Q ss_pred CcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCc-c----CccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 154 NIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVP-G----VLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~-~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
+++||+|||.+++++. .++. ..+.+++++.+..+ + .+..++.++++.|+|+|++++++.|++++
T Consensus 204 ~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~ 283 (324)
T cd01563 204 LPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTE 283 (324)
T ss_pred CCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcC
Confidence 7999999999986552 1211 12334566543211 1 12345678999999999999999999999
Q ss_pred CCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCC
Q 023801 218 GLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 257 (277)
Q Consensus 218 gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 257 (277)
|+++||+||+++++++++.+++. .++++||+++|++|.|+
T Consensus 284 gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 284 GIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred CceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 99999999999999999887754 36789999999999864
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=343.58 Aligned_cols=236 Identities=21% Similarity=0.261 Sum_probs=204.2
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|.++|.. ++++|.|+||. ++||++||||||+|+|++|+.+|++|+||||.++++.
T Consensus 92 KdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~ 171 (404)
T cd06447 92 KARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQW 171 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHH
Confidence 89999999974 88999999985 4799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC---C-----CCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~-----~d~i 131 (277)
|+++|+.|||+|+.+++ +++++.+.++++++++++++|++|++++.. ++||+|+++||++|+++ + ||+|
T Consensus 172 K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~V 248 (404)
T cd06447 172 KKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFV 248 (404)
T ss_pred HHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEE
Confidence 99999999999999985 788999999999988767789999766655 89999999999999952 3 5589
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCCC-----------CCcccCccCCCCC---ccCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~ 192 (277)
|+|+|+||+++|++++||+. .|+++||+|||++++.+. .+.+ ..+.++||+.+.. ++.+..
T Consensus 249 vvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~ 328 (404)
T cd06447 249 YLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLME 328 (404)
T ss_pred EEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHH
Confidence 99999999999999999997 788999999999987552 2211 2345667766532 233446
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
..+|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 329 ~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 329 PLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred HhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999987753
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=337.07 Aligned_cols=245 Identities=21% Similarity=0.243 Sum_probs=205.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. ++||++|+||||+|+|++|+.+|++|+||||...++.|+++++.|||+|+.+++ ++
T Consensus 47 K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~ 119 (319)
T PRK06381 47 KDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KY 119 (319)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CH
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999996 57
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCC-CCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhc------CC
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------NP 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~------~~ 153 (277)
+++.+.+++++++. ++|++++++ ||...++||+++++||++|++..||+||+|+|+||+++|++++|++. .|
T Consensus 120 ~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~ 198 (319)
T PRK06381 120 EEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSR 198 (319)
T ss_pred HHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCC
Confidence 88888898888775 788888986 76322789999999999999657999999999999999999999998 78
Q ss_pred CcEEEEEecCCCCccC----CCCCC------CcccC-ccCCCCC---------ccCccccccCeEEEeCHHHHHHHHHHH
Q 023801 154 NIKLYGIEPTESPVLS----GGKPG------PHKIQ-GIGAGFV---------PGVLEVNIIDEVVQVSSDEAIETAKLL 213 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~~------~~~~~-gl~~~~~---------~~~~~~~~~~~~~~v~d~e~~~a~~~l 213 (277)
.++|++||+.+++++. .+... .+..+ .++.+.. ...+..++.++.+.|+|+|++++++.|
T Consensus 199 ~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~l 278 (319)
T PRK06381 199 MPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELL 278 (319)
T ss_pred CCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHH
Confidence 9999999999986542 11111 01111 1111110 011234567799999999999999999
Q ss_pred HHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 023801 214 ALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGE 255 (277)
Q Consensus 214 ~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~ 255 (277)
++++||++||++|+++++++++.+++.. +++||+++ |||.
T Consensus 279 a~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 279 RRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 9999999999999999999999887653 47899999 8875
|
|
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=337.17 Aligned_cols=244 Identities=27% Similarity=0.360 Sum_probs=212.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||.+.++|.+++++|. + ++||++|+||||+|+|++|+++|++|++|+|.+.++.|+++|+.+||+|+.+++ ++
T Consensus 48 Kdr~a~~~l~~~~~~~~---~-~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~ 121 (304)
T cd01562 48 KIRGAYNKLLSLSEEER---A-KGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DF 121 (304)
T ss_pred HHHhHHHHHHhcCHhhc---C-CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CH
Confidence 89999999999998772 1 459999999999999999999999999999999999999999999999999996 58
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ +.||+++++||++|+. .||+||+|+|+|||++|++++|++.++.+|||+|
T Consensus 122 ~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv 198 (304)
T cd01562 122 DEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGV 198 (304)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999998886 7899999999988 7899999999999995 5999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
+|.+++++. .++. ..+...+++.... ++.+..++++.++.|+|+|++++++.|+++||+++||+||++
T Consensus 199 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a 278 (304)
T cd01562 199 EPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALA 278 (304)
T ss_pred EECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHH
Confidence 999987653 1221 1233445543321 233456789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
+++++++.++. ++++||+|+ +||+.
T Consensus 279 ~a~~~~~~~~~--~~~~vv~i~-tGG~~ 303 (304)
T cd01562 279 LAALLSGKLDL--KGKKVVVVL-SGGNI 303 (304)
T ss_pred HHHHHhCcccc--CCCeEEEEe-cCCCC
Confidence 99999987764 678999999 88773
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=343.45 Aligned_cols=251 Identities=21% Similarity=0.243 Sum_probs=212.7
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|.++|.. +++.|.++|+. ++||++||||||+|+|++|+.+|++|+||||+++++.
T Consensus 110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~ 189 (431)
T TIGR02035 110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQW 189 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 89999999975 78899998874 4799999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~i 131 (277)
|+++++.|||+|+.+++ +|+++.+.+++++++.++++|++++ |+.+.++||+|+++||++|+++ .||+|
T Consensus 190 K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V 266 (431)
T TIGR02035 190 KKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFV 266 (431)
T ss_pred HHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEE
Confidence 99999999999999996 7899999999999887677888874 4455589999999999999952 47799
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCC-----------CCCcccCccCCCCCc---cCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGK-----------PGPHKIQGIGAGFVP---GVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~-----------~~~~~~~gl~~~~~~---~~~~~ 192 (277)
++|+|+||+++||++++|+. +|++|||+|||++++++. .++ ...+.++||+.+..+ +.+..
T Consensus 267 ~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~ 346 (431)
T TIGR02035 267 YLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLME 346 (431)
T ss_pred EEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHH
Confidence 99999999999999999997 889999999999997642 222 124567788776432 23345
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC-----------CC-CCCeEEEEecCCCC
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP-----------EN-AGKLIVVIFPSFGE 255 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~-----------~~-~~~~vv~i~~~gG~ 255 (277)
.++|+++.|+|+|++++++.|++++|+++||+||++++++.++.+.. +. ++.+.++.. |||.
T Consensus 347 ~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~~ 420 (431)
T TIGR02035 347 PLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA-TGGG 420 (431)
T ss_pred HhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-cCCC
Confidence 68999999999999999999999999999999999999999887652 01 355677777 6665
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=336.78 Aligned_cols=236 Identities=22% Similarity=0.195 Sum_probs=196.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. ++|+++||||||.|+|++|+++|++|+||||+++++.|+.+|+.|||+|+.+++ ++
T Consensus 81 KDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~ 153 (338)
T PRK06450 81 KDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SR 153 (338)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 89999999999999876 679999999999999999999999999999999999999999999999999996 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
+++.+. +++. +.+|+++++||.+ ++||+|+++||++|++. .||+||+|+|+||+++|++++|+++.+
T Consensus 154 ~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~ 227 (338)
T PRK06450 154 EDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISE 227 (338)
T ss_pred HHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccC
Confidence 655443 4444 6788999999998 89999999999999963 599999999999999999999998754
Q ss_pred CcEEEEEecCCCCccC----CCCC-----CCcccCccCCCCCccCc------cccccCeEEEeCHHHHHHHHHHHHHHcC
Q 023801 154 NIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLALKEG 218 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~~~g 218 (277)
.+|||+|||++++++. +..+ ..+..++|..+. |... ..+. +..+.|+|+|+++++++|++ +|
T Consensus 228 ~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~-p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~G 304 (338)
T PRK06450 228 MPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTR-PFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KG 304 (338)
T ss_pred CCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCC-CCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cC
Confidence 4899999999987653 2111 122334544322 2211 1234 78999999999999999987 69
Q ss_pred CeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 219 LFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 219 i~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
+++||+||+++++++++ ++++||+++|++|.|.+
T Consensus 305 i~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 305 LLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred CEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 99999999999999875 34689999989998864
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=343.26 Aligned_cols=250 Identities=23% Similarity=0.227 Sum_probs=212.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++..+|.+++++|. ++||++||||||+|+|++|+++|++|+||+|++ +++.|+.+++.|||+|+.+++ +
T Consensus 99 KdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~ 171 (397)
T PRK06260 99 KDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--N 171 (397)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--c
Confidence 89999999999999986 679999999999999999999999999999997 789999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------ 152 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~------ 152 (277)
++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|++. .||+||+|+|+||+++|++++|+++.
T Consensus 172 ~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~ 248 (397)
T PRK06260 172 FDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIID 248 (397)
T ss_pred HHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcC
Confidence 888889999988876 78888887 8888 88999999999999965 69999999999999999999999875
Q ss_pred CCcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCcc------CccccccCeEEEeCHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPG------VLEVNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~------~~~~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
+.+|||+||+++++++. .+.. ..+..+++..+. |. ....+..+.++.|+|+|++++++.|++
T Consensus 249 ~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~-p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~ 327 (397)
T PRK06260 249 KLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGN-PVNAPKALRAIRESGGTAEAVSDEEILDAQKLLAR 327 (397)
T ss_pred CCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCC-CCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
Confidence 34799999999987653 2221 112233433221 21 123445678999999999999999999
Q ss_pred HcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 216 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 216 ~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++|+++||+||+++++++++.+++. .++++||+++|++|.|+.+..
T Consensus 328 ~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 328 KEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred hCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 9999999999999999999988765 468899999988899887643
|
|
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=345.74 Aligned_cols=253 Identities=19% Similarity=0.159 Sum_probs=214.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++..++..+.+.|........|+++||||||+|+|++|+.+|++|+||+|++ .+..|+.+++.|||+|+.+++ +
T Consensus 166 KDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~ 243 (484)
T PLN02569 166 KDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--D 243 (484)
T ss_pred HHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--C
Confidence 8999999999999987633222569999999999999999999999999999996 788999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCC-CCEEEEecCCchhHHHHHHHHhhcC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN------ 152 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~-~d~iv~pvG~Gg~~aGi~~~~~~~~------ 152 (277)
|+++++.+++++++. ++|+++++ ||.+ ++||+|+++||++|++++ ||+||+|+|+||+++|++++|+++.
T Consensus 244 ~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~ 320 (484)
T PLN02569 244 FDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVD 320 (484)
T ss_pred HHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCC
Confidence 899999999988876 68889988 8888 799999999999999754 9999999999999999999999863
Q ss_pred CCcEEEEEecCCCCccC----CCC-------CCCcccCccCCCCCccCcc------ccccCeEEEeCHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGK-------PGPHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~-------~~~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
+.+||++||+++++++. .+. ..++.+++++.+. |..+. .+.-+.++.|+|+|++++++. ++
T Consensus 321 ~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~ 398 (484)
T PLN02569 321 RLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-AD 398 (484)
T ss_pred CCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HH
Confidence 46799999999997664 221 1234556665442 33221 223445799999999999999 88
Q ss_pred HcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 216 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 216 ~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
++|+++||+||+++++++++.+++. .++++||+++|+.|.||.+.
T Consensus 399 ~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~ 444 (484)
T PLN02569 399 KTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQS 444 (484)
T ss_pred HCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhH
Confidence 8999999999999999999988765 46789999999999999874
|
|
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=307.24 Aligned_cols=248 Identities=24% Similarity=0.314 Sum_probs=214.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|.|+|.+.+..+.++.. . +.|++.||||||+|+|++|+.+|+|++||||.++|..|+..++.||++|+++++ ..
T Consensus 56 KfRGAlNav~~l~~ek~-~---kgvithSSGNHaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~--~~ 129 (323)
T KOG1251|consen 56 KFRGALNAVSSLKAEKR-A---KGVITHSSGNHAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEP--TV 129 (323)
T ss_pred ehhhhHHHHHHhhHhhh-c---CceEeecCCcHHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecC--cc
Confidence 68999999999984433 1 459999999999999999999999999999999999999999999999999997 34
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.++.++. +++.++||++|.. +.|++|+++|+++|. +.+|++|+|+|+||+++|++...+.+.|+++|++|
T Consensus 130 ~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~v 206 (323)
T KOG1251|consen 130 ESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAV 206 (323)
T ss_pred chHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEe
Confidence 67788899999998 7899999999998 899999999999999 58999999999999999999999999999999999
Q ss_pred ecCCCCcc----CCCCC-----CCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVL----SGGKP-----GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~----~~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||+..+.- ..++. .++..+|.... ..+|.+.++++|+.++|+|+|+.++++.++++..+.+||+++.+
T Consensus 207 eP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lg 286 (323)
T KOG1251|consen 207 EPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALG 286 (323)
T ss_pred cCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHH
Confidence 99887532 12221 23445555432 35778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+++++..-.+ ...+++.+|+ +|||.++..
T Consensus 287 fAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 287 FAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred HHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 9998854333 4578999999 999977763
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=339.81 Aligned_cols=260 Identities=21% Similarity=0.251 Sum_probs=212.4
Q ss_pred CChhHHHHHHHHHHc--CC--------------C---CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHH
Q 023801 1 MCRIGYSMISDAEAK--GL--------------I---TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~--g~--------------l---~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~ 61 (277)
|||++.+.|.++..+ +. + .++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+
T Consensus 77 K~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~ 155 (399)
T PRK08206 77 KALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERV 155 (399)
T ss_pred HHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 799999999888732 21 0 022 359999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC-CcchhhhhhchHHHHHhhhCC---CCCEEE
Q 023801 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALV 132 (277)
Q Consensus 62 ~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv 132 (277)
.+|+.|||+|+.+++ +++++.+.+.+++++. +++|++ ||+| |.+.++||+|+++||++|+++ .||+||
T Consensus 156 ~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vv 232 (399)
T PRK08206 156 DAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVF 232 (399)
T ss_pred HHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEE
Confidence 999999999999995 6888999999988876 778886 6775 556689999999999999965 599999
Q ss_pred EecCCchhHHHHHHHHhhcC--CCcEEEEEecCCCCccC----CCCC----C--CcccCccCCCC---CccCccccccCe
Q 023801 133 SGIGTGGTITGAGKFLKEKN--PNIKLYGIEPTESPVLS----GGKP----G--PHKIQGIGAGF---VPGVLEVNIIDE 197 (277)
Q Consensus 133 ~pvG~Gg~~aGi~~~~~~~~--~~~~vigV~~~~~~~~~----~~~~----~--~~~~~gl~~~~---~~~~~~~~~~~~ 197 (277)
+|+|+||+++|++.++++++ +.+|||+|||++++++. .+++ . .+..+|+..+. .++.+..+.+|+
T Consensus 233 vpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~ 312 (399)
T PRK08206 233 LQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADA 312 (399)
T ss_pred EcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCE
Confidence 99999999999999999884 47999999999997653 2222 1 23456665432 234455678999
Q ss_pred EEEeCHHHHHHHHHHHHH----HcCCeeeccHHHHHHHHHHHHhc---------CC-CCCCeEEEEecCCCCCCcchhcc
Q 023801 198 VVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIEIAKR---------PE-NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 198 ~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~alaa~~~~~~~---------~~-~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
++.|+|+|++++++.|++ ++|+++||++|+++++++++.+. +. .++++||+|+ |+|+++.+ .|
T Consensus 313 ~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tgG~~d~~--~~ 389 (399)
T PRK08206 313 FISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TEGDTDPD--RY 389 (399)
T ss_pred EEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CCCCCCHH--HH
Confidence 999999999999999996 78999999999999999976532 22 3578999999 69997766 44
Q ss_pred HHHH
Q 023801 264 ESVR 267 (277)
Q Consensus 264 ~~~~ 267 (277)
.+++
T Consensus 390 ~~~~ 393 (399)
T PRK08206 390 REIV 393 (399)
T ss_pred HHHh
Confidence 4444
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=341.41 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=208.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+|++.|. ++||++||||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++ ++
T Consensus 96 KdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~ 168 (442)
T PRK05638 96 RDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SV 168 (442)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CH
Confidence 89999999999999876 679999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------N 154 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------~ 154 (277)
+++.+.+++++++. ++|++++++||.+ ++||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .
T Consensus 169 ~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~ 244 (442)
T PRK05638 169 DEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEI 244 (442)
T ss_pred HHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCC
Confidence 89999999988775 7999999999998 8999999999999994 99999999999999999999999764 4
Q ss_pred cEEEEEecCCCCccC----CCCC--CCcccCccCCCCCc-----cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec
Q 023801 155 IKLYGIEPTESPVLS----GGKP--GPHKIQGIGAGFVP-----GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI 223 (277)
Q Consensus 155 ~~vigV~~~~~~~~~----~~~~--~~~~~~gl~~~~~~-----~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p 223 (277)
+||++||+++++++. .+.. ..+...++..+... .....++.+.++.|+|+++.++++.+++ +||++||
T Consensus 245 prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~ep 323 (442)
T PRK05638 245 PKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAEL 323 (442)
T ss_pred CeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecc
Confidence 799999999987653 2211 12233444322111 0122344567899999999998887765 7999999
Q ss_pred cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCc
Q 023801 224 SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 224 ~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~ 258 (277)
+||+++++++++.+++. .++++||+++|++|.|+.
T Consensus 324 ssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 324 SSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 99999999999988865 468899999999999884
|
|
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=305.65 Aligned_cols=271 Identities=37% Similarity=0.561 Sum_probs=232.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-- 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~-- 78 (277)
|||.|.++++.|+|.|+|-||+ .|++.|+||+|+++|..|+.+|.+|+|+||.+.+.+|.+.++.+||+|+.+++..
T Consensus 80 KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~ 158 (391)
T KOG1481|consen 80 KDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAHVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIV 158 (391)
T ss_pred hhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHHhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCcc
Confidence 8999999999999999999995 6999999999999999999999999999999999999999999999999998532
Q ss_pred ChHHHHHHHHHHHHhCC------CeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC
Q 023801 79 GMKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 152 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~ 152 (277)
+-.+....|++.+++.+ ..+|.+||+|+.||..||.++|+|||.|..+.+|++++.+|+|||++|+.+++|+..
T Consensus 159 dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~ 238 (391)
T KOG1481|consen 159 DPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKS 238 (391)
T ss_pred ChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcC
Confidence 22333344444443332 236789999999999999999999999999999999999999999999999999988
Q ss_pred CC-cEEEEEecCCCCccC-------------CC----CCCCcccCccCCCCCccCc--cccccCeEEEeCHHHHHHHHHH
Q 023801 153 PN-IKLYGIEPTESPVLS-------------GG----KPGPHKIQGIGAGFVPGVL--EVNIIDEVVQVSSDEAIETAKL 212 (277)
Q Consensus 153 ~~-~~vigV~~~~~~~~~-------------~~----~~~~~~~~gl~~~~~~~~~--~~~~~~~~~~v~d~e~~~a~~~ 212 (277)
+. ++++-.+|.++-.+. .+ .+..+..+|++...++.++ ..+.+|+.+.|+|++++++.+.
T Consensus 239 ~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~ 318 (391)
T KOG1481|consen 239 DGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRY 318 (391)
T ss_pred CCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHHHHHH
Confidence 75 899999999984332 11 1234567888877666554 4667999999999999999999
Q ss_pred HHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhcc
Q 023801 213 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273 (277)
Q Consensus 213 l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~ 273 (277)
|..++|++++.+|+.+..+++++++.. .++++||+|+||.|.||++.++.+.+++..+-.
T Consensus 319 Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~ 378 (391)
T KOG1481|consen 319 LLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSKLFSESFLESKKLS 378 (391)
T ss_pred hhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHHhcCHHHHhhcCCC
Confidence 999999999999999999999998876 499999999999999999998888877765443
|
|
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=310.44 Aligned_cols=212 Identities=43% Similarity=0.622 Sum_probs=197.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+ |+ .+||++|+||||+|+|++|+++|++|++|+|.+.++.|+++++.+|++|+.+++ ++
T Consensus 31 K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~ 106 (244)
T cd00640 31 KDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DF 106 (244)
T ss_pred HHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 899999999999999976 44 579999999999999999999999999999999999999999999999999996 47
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
+++.+.+++++++.++++|+++|.|+.+ +.||.++++||++|++. .||+||+|+|+||+++|++.+|+..+|.+||++
T Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~ 185 (244)
T cd00640 107 DDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIG 185 (244)
T ss_pred HHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEE
Confidence 8889999999988568999999999988 78999999999999966 599999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|++ +++.|+|+|++++++.|++++|+++||++|++++++.++.++.
T Consensus 186 v~~----------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~ 231 (244)
T cd00640 186 VEP----------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL 231 (244)
T ss_pred Eee----------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc
Confidence 997 7899999999999999999999999999999999999988775
Q ss_pred CCCCCeEEEEecC
Q 023801 240 ENAGKLIVVIFPS 252 (277)
Q Consensus 240 ~~~~~~vv~i~~~ 252 (277)
.++++||+++|+
T Consensus 232 -~~~~~vv~v~tg 243 (244)
T cd00640 232 -GKGKTVVVILTG 243 (244)
T ss_pred -CCCCEEEEEeCC
Confidence 367889999843
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=327.29 Aligned_cols=259 Identities=18% Similarity=0.216 Sum_probs=211.0
Q ss_pred CChhHHHHHHHHHHc----------------CCCCC--CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH
Q 023801 1 MCRIGYSMISDAEAK----------------GLITP--GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~----------------g~l~~--g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~ 62 (277)
|||++.+.|.+++++ +.+.+ +.++||++|+||||+|+|++|+.+|++|+||||+++++.|+.
T Consensus 55 K~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~ 134 (376)
T TIGR01747 55 KMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVE 134 (376)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 799999999998763 22221 236799999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCC--CcchhhhhhchHHHHHhhhCC----CCCEE
Q 023801 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDAL 131 (277)
Q Consensus 63 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~Ei~~Q~~~----~~d~i 131 (277)
+|+.|||+|+++++ +|+++.+.+.+++++. ++++++ +|+| |.. ++||+|+++||++|+++ .||+|
T Consensus 135 ~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~v 210 (376)
T TIGR01747 135 NILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHV 210 (376)
T ss_pred HHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEE
Confidence 99999999999985 6888888999888876 678876 4655 443 78999999999999952 69999
Q ss_pred EEecCCchhHHHHHHHHhhcCC--CcEEEEEecCCCCccC----C--CCC------CCcccCccCCCC---CccCccccc
Q 023801 132 VSGIGTGGTITGAGKFLKEKNP--NIKLYGIEPTESPVLS----G--GKP------GPHKIQGIGAGF---VPGVLEVNI 194 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~~~--~~~vigV~~~~~~~~~----~--~~~------~~~~~~gl~~~~---~~~~~~~~~ 194 (277)
|+|+|+||+++|++.++++..+ .++|++|||++++++. . +++ ..+.++||+.+. .++.+..+.
T Consensus 211 vvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~ 290 (376)
T TIGR01747 211 LLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNC 290 (376)
T ss_pred EECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhc
Confidence 9999999999999999987643 3799999999998763 1 322 124567777643 245566788
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHc----CCeeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~alaa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
.+.++.|+|+|+.++|+.|++.. ++++||+++++++++.. +.+++. .++++||+|+ |||+.+.+
T Consensus 291 ~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~-t~gn~d~~- 368 (376)
T TIGR01747 291 TSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVIS-TEGDTDPD- 368 (376)
T ss_pred CCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEe-CCCCCCHH-
Confidence 99999999999999999999855 59999999999988873 333333 3578899998 99996555
Q ss_pred hccHHH
Q 023801 261 VLFESV 266 (277)
Q Consensus 261 ~~~~~~ 266 (277)
.|.++
T Consensus 369 -~~~~~ 373 (376)
T TIGR01747 369 -HYREI 373 (376)
T ss_pred -HHHHH
Confidence 55543
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=329.01 Aligned_cols=250 Identities=17% Similarity=0.070 Sum_probs=206.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.++|. +.||++||||||+|+|++|+++|++|+||||+++++.+...++.+|++|+.+++ +|
T Consensus 101 KdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~ 173 (398)
T TIGR03844 101 KELEALPTMQRLKERGG-----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DY 173 (398)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CH
Confidence 79999999999999885 679999999999999999999999999999998654444445789999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-------C
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-------P 153 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-------~ 153 (277)
+++.+.++++++++ +++..++++||.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++. .
T Consensus 174 d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~ 251 (398)
T TIGR03844 174 TDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSK 251 (398)
T ss_pred HHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999998876 6654566678877 8999999999999996449999999999998999999998742 3
Q ss_pred CcEEEEEecCCCCccC----CCCCC---------------CcccCccCCCCCcc-------CccccccCeEEEeCHHHHH
Q 023801 154 NIKLYGIEPTESPVLS----GGKPG---------------PHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAI 207 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~----~~~~~---------------~~~~~gl~~~~~~~-------~~~~~~~~~~~~v~d~e~~ 207 (277)
.||+++||+++++++. .+.+. .+..+++..+..+. ....++.++++.|+|+|++
T Consensus 252 ~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~ 331 (398)
T TIGR03844 252 LPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAV 331 (398)
T ss_pred CCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHH
Confidence 4799999999998663 22211 12344553332222 2235678899999999999
Q ss_pred HHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCcc
Q 023801 208 ETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 208 ~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 259 (277)
++++.|++++|+++||+||+++|+++++.+++.. ++++||+++|++|.|++.
T Consensus 332 ~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 332 SAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLR 384 (398)
T ss_pred HHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHH
Confidence 9999999999999999999999999999887764 788999999888988875
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=321.23 Aligned_cols=249 Identities=22% Similarity=0.228 Sum_probs=206.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.+++.++.++|. .+||++||||||+|+|++|+.+|++|+||+|+. +++.|+.+++.+||+|+.+++ +
T Consensus 55 KdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~ 127 (328)
T TIGR00260 55 KDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--N 127 (328)
T ss_pred HhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--C
Confidence 89999999999999886 579999999999999999999999999999998 899999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCC-CcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcCC----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFEN-PANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNP---- 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~~---- 153 (277)
++++.+.+++++++. ++++++++++ |.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|++...
T Consensus 128 ~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~ 205 (328)
T TIGR00260 128 FDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLD 205 (328)
T ss_pred HHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCc
Confidence 888988899888775 4565655432 777 78999999999999964 799999999999999999999998410
Q ss_pred -CcEEEEEecCCCCccC-----CCCCC-----CcccCccCCCCCccC------ccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 154 -NIKLYGIEPTESPVLS-----GGKPG-----PHKIQGIGAGFVPGV------LEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 154 -~~~vigV~~~~~~~~~-----~~~~~-----~~~~~gl~~~~~~~~------~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
.+++++|||.+++++. .++.. .+..++++.+. |.. +.+.++++.+.|+|+|++++++.|+++
T Consensus 206 ~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 284 (328)
T TIGR00260 206 SLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLARE 284 (328)
T ss_pred cCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHh
Confidence 3499999999985442 22221 22334443321 211 234678899999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcc
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 259 (277)
+|+++||++|+++++++++.+++. .++++||+++|++|.|+.|
T Consensus 285 ~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 285 EGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred cCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 999999999999999999888754 4678999999888888753
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=322.41 Aligned_cols=253 Identities=24% Similarity=0.242 Sum_probs=197.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~---~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||.+..++..+.++|. +.+|+ +||||||+|+|++|+++|++|+||+|+..+ +.|+.+++.+||+|+.++.
T Consensus 66 K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~ 140 (365)
T cd06446 66 KINNALGQALLAKRMGK-----KRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPS 140 (365)
T ss_pred hHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCC
Confidence 89999999999999886 33555 799999999999999999999999998643 3678899999999999985
Q ss_pred C-CChHHHHHHHHHH-HHhC-CCeEecCCCC----CCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHH
Q 023801 77 A-KGMKGAVQKAEEI-LAKT-PNAYMLQQFE----NPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 ~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~~----~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~ 145 (277)
. ..+.+++..+.+. .++. ..+|+++++. ++.++++||+|+++||++|+. ..||+||+|+|+|||++|++
T Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~ 220 (365)
T cd06446 141 GSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLF 220 (365)
T ss_pred CCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHH
Confidence 3 2356665444443 3332 2344443331 233568899999999999995 26999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCC--------CC--------------------CCcccCccCCCC-Cc--cCccccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGG--------KP--------------------GPHKIQGIGAGF-VP--GVLEVNI 194 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~--------~~--------------------~~~~~~gl~~~~-~~--~~~~~~~ 194 (277)
++++. .+++|||+|||.+++.+... .. ..+..++++... .+ +.+...+
T Consensus 221 ~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~ 299 (365)
T cd06446 221 YPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSG 299 (365)
T ss_pred HHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhC
Confidence 98887 46899999999998776421 11 011223343211 11 1234567
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+|+++.|+|+|++++++.|++++||++||+||+++++++++.++. .++++||+|+|+.|+||+++
T Consensus 300 ~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 300 RVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred CceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeEEEEeCCCCcccccc
Confidence 899999999999999999999999999999999999999988775 36789999998889999986
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=317.82 Aligned_cols=247 Identities=22% Similarity=0.256 Sum_probs=197.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||++.+++.+++++|. ++||++ |+||||+|+|++|+++|++|++|||.+.+ ..|+.+++.|||+
T Consensus 36 K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~ 110 (307)
T cd06449 36 KIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGAD 110 (307)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHCCCE
Confidence 89999999999999987 679998 68999999999999999999999999876 4689999999999
Q ss_pred EEEeCCCC--ChHHHHHHHHH-HHHhCCCeEe-cCCC-CCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEE-ILAKTPNAYM-LQQF-ENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTIT 142 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~-~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~a 142 (277)
|+.++... ....+.+.+.+ +.++.+..++ .+++ +||.+ +.||.++++||++|++. .||+||+|+|||||++
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~ 189 (307)
T cd06449 111 VRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHA 189 (307)
T ss_pred EEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHH
Confidence 99998632 11223333333 3333323344 4454 38888 78999999999999954 6999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEecCCCCccCCCCCC---CcccC--ccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHKIQ--GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~~~~~~~~~~---~~~~~--gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
|++++|++.++.+|||+|+|.+++.+...+.. ...+. ++..+..+..++.+++++.+.|+|+|++++++.|++++
T Consensus 190 G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~ 269 (307)
T cd06449 190 GLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLE 269 (307)
T ss_pred HHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998654311100 01121 22222335556778899999999999999999999999
Q ss_pred CCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCC
Q 023801 218 GLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFG 254 (277)
Q Consensus 218 gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG 254 (277)
||++|| |+|+++++++++++++.. ++++||+|| |||
T Consensus 270 Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 270 GIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred CCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 999999 899999999999887653 578999999 776
|
|
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=321.79 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=204.1
Q ss_pred CChhHHHHHHHHHH--cCCC--------------C--CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH
Q 023801 1 MCRIGYSMISDAEA--KGLI--------------T--PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62 (277)
Q Consensus 1 ~dR~a~~~v~~a~~--~g~l--------------~--~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~ 62 (277)
|||++.+.|.++.+ .|.. + ....+||++|+||||+|+|++|+++|++|+||||+++++.|+.
T Consensus 74 K~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~ 153 (396)
T TIGR03528 74 KVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLE 153 (396)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHH
Confidence 79999999998643 3310 0 0123799999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecC-----CCCCC-cchhhhhhchHHHHHhhhC----CCCCEEE
Q 023801 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ-----QFENP-ANPKIHYETTGPELWKGSG----GRIDALV 132 (277)
Q Consensus 63 ~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~-~~~~~g~~t~~~Ei~~Q~~----~~~d~iv 132 (277)
+++.|||+|+.+++ +++++.+.+++++++. +++|++ +|+|. ...++||+|+++||++|++ +.||+||
T Consensus 154 ~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vv 230 (396)
T TIGR03528 154 NIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVF 230 (396)
T ss_pred HHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEE
Confidence 99999999999985 6888999999998876 778875 67652 2236899999999999995 2699999
Q ss_pred EecCCchhHHHHHHHHhhc-CCC-cEEEEEecCCCCccCC------CCC------CCcccCccCCCC---CccCcccccc
Q 023801 133 SGIGTGGTITGAGKFLKEK-NPN-IKLYGIEPTESPVLSG------GKP------GPHKIQGIGAGF---VPGVLEVNII 195 (277)
Q Consensus 133 ~pvG~Gg~~aGi~~~~~~~-~~~-~~vigV~~~~~~~~~~------~~~------~~~~~~gl~~~~---~~~~~~~~~~ 195 (277)
+|+|+||+++|++.++++. .+. ++||+|||++++++.. +++ ..+.++|++.+. .++.+..+++
T Consensus 231 vpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~ 310 (396)
T TIGR03528 231 LQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYA 310 (396)
T ss_pred EcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhC
Confidence 9999999999999989554 343 5999999999987641 221 123456665432 2344556789
Q ss_pred CeEEEeCHHHHHHHHHHHHH----HcCCeeeccHHHHHHHHHH---------HHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLAL----KEGLFVGISSGGAAAAAIE---------IAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~----~~gi~~~p~sg~alaa~~~---------~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
|+++.|+|+|+.++++.|++ ++++++||+++++++++.. +.+++. .++++||+|+ ||||.+.+
T Consensus 311 d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~-tggn~d~~-- 387 (396)
T TIGR03528 311 SQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLIS-TEGDTDPD-- 387 (396)
T ss_pred CeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEE-CCCCCCHH--
Confidence 99999999999999999998 5799999999999955532 222222 3578999999 99996555
Q ss_pred ccHHH
Q 023801 262 LFESV 266 (277)
Q Consensus 262 ~~~~~ 266 (277)
.|.++
T Consensus 388 ~~~~~ 392 (396)
T TIGR03528 388 NYRKI 392 (396)
T ss_pred HHHHH
Confidence 45443
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=314.17 Aligned_cols=255 Identities=24% Similarity=0.245 Sum_probs=199.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~---~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..++++|+ .+.|+++|+||||+|+|++|+++|++|+||||+..++ .|+.+|+.+||+|+.++.
T Consensus 94 K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g 169 (402)
T PRK13028 94 KINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRG 169 (402)
T ss_pred HHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCC
Confidence 79999999999999996 1356679999999999999999999999999986443 578899999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEecCC-C----CCCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYMLQQ-F----ENPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...++++.+.+.+ +.++.++.+|+.+ . ..|.++..||++++.||.+|+. ..||+||+|+|+||+++|++.
T Consensus 170 ~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~ 249 (402)
T PRK13028 170 GRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFS 249 (402)
T ss_pred CCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHH
Confidence 3467888777754 4554335566532 1 1244545699999999999973 359999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCC--------CCccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTE--------SPVLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~--------~~~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|++ .++++||||||.+ ++++..+++. .+...||..+.+ |. .+.....
T Consensus 250 ~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~ 328 (402)
T PRK13028 250 AFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGR 328 (402)
T ss_pred HHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcC
Confidence 9986 4889999999998 5556544331 112233332111 11 1223445
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|+++|||+++++|+++++++++++++. .++++||+++|++|+||++++
T Consensus 329 ~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~ 393 (402)
T PRK13028 329 VEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYV 393 (402)
T ss_pred cEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHH
Confidence 78999999999999999999999999999999999999987653 368899999977799999864
|
|
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=316.05 Aligned_cols=255 Identities=20% Similarity=0.247 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~--~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||++..++..++++|. + +.|+++||||||+|+|++|+++|++|+||||+. .+. .|+++|+.|||+|+.++..
T Consensus 82 K~R~a~~~~~~a~~~g~---~-~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~ 157 (385)
T TIGR00263 82 KINNALGQALLAKRMGK---K-RIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSG 157 (385)
T ss_pred hHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCC
Confidence 89999999999998885 1 345579999999999999999999999999985 343 5788999999999999852
Q ss_pred -CChHHHH-HHHHHHHHhCCCeEec-CCCCC----CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 78 -KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 78 -~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..++++. +.+++++++.++.+|+ +++.+ |.++..||+|+++||++|+. ..||+||+|+|+||+++|++.
T Consensus 158 ~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~ 237 (385)
T TIGR00263 158 SGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFY 237 (385)
T ss_pred CCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHH
Confidence 3466664 4445556654455555 44432 24446899999999999973 258999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-c--cCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~ 195 (277)
++.. .|++|||||||+++. .+..+.+. .+...+++.... | +.+.....
T Consensus 238 ~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~ 316 (385)
T TIGR00263 238 AFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGR 316 (385)
T ss_pred HHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCC
Confidence 8865 689999999999852 22222211 011223322111 1 12334556
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++.|+|+|++++++.|+++|||+++|+||++++++++++++. .++++||+++|++|++|++++
T Consensus 317 ~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 317 ATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred eEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHHH
Confidence 78999999999999999999999999999999999999987653 368899999988899998853
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=315.30 Aligned_cols=248 Identities=19% Similarity=0.136 Sum_probs=196.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+.+++.+++++|. ++||++ |+||||+|+|++|+++|+++++|||... +..+..+++.|||+|+.+++.
T Consensus 40 K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~ 114 (311)
T TIGR01275 40 KIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE 114 (311)
T ss_pred hHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch
Confidence 89999999999999987 679998 6699999999999999999999999975 456677889999999999852
Q ss_pred CChHHHHHHHHHHHH----hCC-CeEecCCCCCCcchhhhhhchHHHHHhhhCC--CCCEEEEecCCchhHHHHHHHHhh
Q 023801 78 KGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 78 ~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
++.+..+.+.++++ +.+ .+++.+++.||.+ ..|+.++++||++|++. .||+||+|+|||||++|++++||+
T Consensus 115 -~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~ 192 (311)
T TIGR01275 115 -EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSI 192 (311)
T ss_pred -hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 34444444444432 322 2445577788887 67788899999999953 699999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCC---CCCcccCccCCC-CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cH
Q 023801 151 KNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SS 225 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~s 225 (277)
++|+++||||+++.+.+..... ...+..++++.+ ...+.+..++.+..+.|+|+|++++++.|++++|+++|| |+
T Consensus 193 ~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~s 272 (311)
T TIGR01275 193 LNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYT 272 (311)
T ss_pred hCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchH
Confidence 9999999999987653211100 011234455443 223344567788899999999999999999999999999 69
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 226 GGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
|++++++++++++++.++++||+|+ |||+.
T Consensus 273 g~~~aa~~~~~~~~~~~~~~vv~i~-tGG~~ 302 (311)
T TIGR01275 273 GKAFYGLIDLIRKGELGEKGILFIH-TGGIS 302 (311)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEE-CCCcc
Confidence 9999999998877655677899999 88873
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=314.61 Aligned_cols=257 Identities=22% Similarity=0.280 Sum_probs=196.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||+|..++.+++++|. +++++ +|+||||+|+|++|+.+|++|+||||... ++.|+.+|+.|||+|+.++.
T Consensus 101 K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~ 175 (419)
T TIGR01415 101 KINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPS 175 (419)
T ss_pred HHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECC
Confidence 89999999999999996 34665 68999999999999999999999999854 56889999999999999986
Q ss_pred CCChHH------------------HHHHHHHHHHhCC-CeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEe
Q 023801 77 AKGMKG------------------AVQKAEEILAKTP-NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSG 134 (277)
Q Consensus 77 ~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~p 134 (277)
. +++ +++.+.+.+++.+ ..|+++++.|+ ...||.++|+||++|+.. .||+||+|
T Consensus 176 ~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~ 251 (419)
T TIGR01415 176 E--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGC 251 (419)
T ss_pred c--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 3 222 2456666666544 44566665553 367999999999999953 49999999
Q ss_pred cCCchhHHHHHHHHhhc----CCCcEEEEEecCCCCccCCCCC----------CC-cccCccCCCCCccCc---------
Q 023801 135 IGTGGTITGAGKFLKEK----NPNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVL--------- 190 (277)
Q Consensus 135 vG~Gg~~aGi~~~~~~~----~~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~--------- 190 (277)
+|+||+++|++.+|.+. .+++|||+|||++++++..+.. .+ ..+.+++.++.|..+
T Consensus 252 vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~ 331 (419)
T TIGR01415 252 VGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHG 331 (419)
T ss_pred eCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCC
Confidence 99999999999888432 2579999999999987764321 11 234456655444322
Q ss_pred --------cccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCC--eEEEEecCCCCCCcch
Q 023801 191 --------EVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGK--LIVVIFPSFGERYLSS 260 (277)
Q Consensus 191 --------~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~--~vv~i~~~gG~~~~~~ 260 (277)
..+.+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++....++ +||+++++.|+ +|.
T Consensus 332 ~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~--~d~ 409 (419)
T TIGR01415 332 VAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGL--LDL 409 (419)
T ss_pred ccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCc--CCH
Confidence 123445789999999999999999999999999999999999998887653333 45555522266 555
Q ss_pred hccHHHHH
Q 023801 261 VLFESVRK 268 (277)
Q Consensus 261 ~~~~~~~~ 268 (277)
..|++++.
T Consensus 410 ~~y~~~~~ 417 (419)
T TIGR01415 410 KAYAKYLH 417 (419)
T ss_pred HHHHHHhc
Confidence 57776653
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=313.72 Aligned_cols=259 Identities=22% Similarity=0.264 Sum_probs=199.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||+|..++.+++++|. +.+++ +|+||||+|+|++|+.+|++|+||||+. .++.|+.+|+.|||+|+.+++
T Consensus 110 K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~ 184 (427)
T PRK12391 110 KPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPS 184 (427)
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECC
Confidence 89999999999999997 34665 5799999999999999999999999974 366889999999999999985
Q ss_pred CCC----------------hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCC
Q 023801 77 AKG----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGT 137 (277)
Q Consensus 77 ~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~ 137 (277)
..+ ...+++.+.+.+++.++.+|...+.+ .+...||.++|+||++|+. ..||+||+|+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~ 263 (427)
T PRK12391 185 DLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGG 263 (427)
T ss_pred chhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 311 11145666777766545455544432 2347899999999999995 369999999999
Q ss_pred chhHHHHHHHHhh---cC-CCcEEEEEecCCCCccCCCCC----------CC-cccCccCCCCCccCcc-----------
Q 023801 138 GGTITGAGKFLKE---KN-PNIKLYGIEPTESPVLSGGKP----------GP-HKIQGIGAGFVPGVLE----------- 191 (277)
Q Consensus 138 Gg~~aGi~~~~~~---~~-~~~~vigV~~~~~~~~~~~~~----------~~-~~~~gl~~~~~~~~~~----------- 191 (277)
||+++|++.+|.. .+ +++|||+|||++|+++..+.. .+ ..+.+++.++.|..+.
T Consensus 264 Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~ 343 (427)
T PRK12391 264 GSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAP 343 (427)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEecCCCCCCccccccccccCCchH
Confidence 9999999997733 34 889999999999988764311 11 2355666665444321
Q ss_pred ------ccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC--CCCCeEEEEecCCCCCCcchhcc
Q 023801 192 ------VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE--NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 192 ------~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
...+.+.+.|+|+|++++++.|+++|||+++|+||++++++++++++.. .++++||+++|+.|+ +|...|
T Consensus 344 ~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~--~d~~~y 421 (427)
T PRK12391 344 LVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGL--LDLAAY 421 (427)
T ss_pred HHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCC--CCHHHH
Confidence 2233478999999999999999999999999999999999999887643 235667777633255 666688
Q ss_pred HHHH
Q 023801 264 ESVR 267 (277)
Q Consensus 264 ~~~~ 267 (277)
++++
T Consensus 422 ~~~l 425 (427)
T PRK12391 422 DAYL 425 (427)
T ss_pred HHHh
Confidence 7765
|
|
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=311.31 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=198.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. .+|+++ |+||||+|+|++|+++|++|++|+|...+ ..|+.+++.|||+
T Consensus 51 K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~ 125 (337)
T PRK12390 51 KTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGAD 125 (337)
T ss_pred hHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCE
Confidence 89999999999999998 678887 88999999999999999999999877554 2377799999999
Q ss_pred EEEeCCCC--ChHHHHHHHHHHHHhCCCeEe-cCCCCCC-cchhhhhhchHHHHHhh---hCCCCCEEEEecCCchhHHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEEILAKTPNAYM-LQQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITG 143 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~~~~~g~~t~~~Ei~~Q---~~~~~d~iv~pvG~Gg~~aG 143 (277)
|+.++... .+.++++.+.+..++.++..| ++++.++ .....||.++++||++| ++.+||+||+|+|||||++|
T Consensus 126 v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaG 205 (337)
T PRK12390 126 VRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAG 205 (337)
T ss_pred EEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHH
Confidence 99998631 233666666666666334344 5555432 22256899999999998 44479999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCCCC--Cc--cCccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
++.+|++.+|++|||+|++++++.+...+. ..+.+++++.+. .+ +.+..+++++.|.|+|+|++++++.++++
T Consensus 206 i~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~ 285 (337)
T PRK12390 206 MVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARL 285 (337)
T ss_pred HHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999876532211 112223443332 22 23556789999999999999999999999
Q ss_pred cCCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCC
Q 023801 217 EGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGE 255 (277)
Q Consensus 217 ~gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~ 255 (277)
+||++|| |||+++++++++++++.. ++++||++| |||.
T Consensus 286 ~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 286 EGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred cCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 9999999 599999999999998764 677899998 8886
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=307.93 Aligned_cols=255 Identities=24% Similarity=0.279 Sum_probs=194.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-C--HHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S--LERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~--~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..|+++|+ .+.|+++|+||||+|+|++|+++|++|+||||+.. + ..|+.+|+.+||+|+.++.
T Consensus 90 K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g 165 (397)
T PRK04346 90 KINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSG 165 (397)
T ss_pred HHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCC
Confidence 79999999999999996 13566689999999999999999999999999853 3 3578899999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEec-CCCCC----CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYML-QQFEN----PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...+.++...+.+ +.++.++.+|+ .+..+ |.++..||++++.||.+|+. ..||+||+|+|+||+++|++.
T Consensus 166 ~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~ 245 (397)
T PRK04346 166 SRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFH 245 (397)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHH
Confidence 3456666655554 45443344554 32222 34445699999999999984 369999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-c--cCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-P--GVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~--~~~~~~~~ 195 (277)
+|++ .+++|||||||.++. ++..+++. .+...||..+.+ | ..+.....
T Consensus 246 ~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~ 324 (397)
T PRK04346 246 PFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGR 324 (397)
T ss_pred HHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCC
Confidence 9976 789999999999862 22222221 111223322111 1 11234455
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++.|+|+|++++++.|++.|||+++++|+.+++++++++++. .++++||+++|++|+||++++
T Consensus 325 ~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~ 389 (397)
T PRK04346 325 AEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTV 389 (397)
T ss_pred eEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHH
Confidence 68999999999999999999999999999999999999887653 367899999977799998854
|
|
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=309.98 Aligned_cols=250 Identities=19% Similarity=0.217 Sum_probs=199.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCCC--------HHHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--------~~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. ++|+++ |+||||+|+|++|+++|++|+||||+..+ ..|+.+++.|||+
T Consensus 50 K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~ 124 (337)
T TIGR01274 50 KTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGAD 124 (337)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCE
Confidence 79999999999999998 678877 77999999999999999999999998643 5899999999999
Q ss_pred EEEeCCCC--ChHHHHHHHHHHHHhC-CCeEecCCCCC--CcchhhhhhchHHHHHhhh---CCCCCEEEEecCCchhHH
Q 023801 71 LVLTDPAK--GMKGAVQKAEEILAKT-PNAYMLQQFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTIT 142 (277)
Q Consensus 71 v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~--~~~~~~g~~t~~~Ei~~Q~---~~~~d~iv~pvG~Gg~~a 142 (277)
|+.++... +..+.+..+.+.+++. +..++++.+.+ |.. ..|+.++++||++|+ +..||+||+|+|+|||++
T Consensus 125 v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~a 203 (337)
T TIGR01274 125 VRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQA 203 (337)
T ss_pred EEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHH
Confidence 99998521 1234555555555554 23366666543 444 678999999999995 347999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEecCCCCccCCCC---CCCcccCccCCCC--Cc--cCccccccCeEEEeCHHHHHHHHHHHHH
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGK---PGPHKIQGIGAGF--VP--GVLEVNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
|+++++++.++++|||||++++++.+.... ...+.+++++.+. .+ +.+...++++.|.|+|+|++++++.|++
T Consensus 204 Gl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 283 (337)
T TIGR01274 204 GMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK 283 (337)
T ss_pred HHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999997653211 1122334444321 11 3456778899999999999999999999
Q ss_pred HcCCeeec-cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCC
Q 023801 216 KEGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERY 257 (277)
Q Consensus 216 ~~gi~~~p-~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~ 257 (277)
++|+++|| |||+++++++++++++. .++++||+|| |||...
T Consensus 284 ~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h-tGG~~~ 326 (337)
T TIGR01274 284 MEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH-LGGAPA 326 (337)
T ss_pred hcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe-CCChhh
Confidence 99999999 69999999999999876 4678999888 889743
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=309.00 Aligned_cols=249 Identities=23% Similarity=0.268 Sum_probs=198.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeC--CchHHHHHHHHHHHCCCeEEEEeCCCCCH--------HHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aS--sGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--------~~~~~~~~~Ga~ 70 (277)
|||.+..++.+++++|. ++||++| +||||+|+|++|+.+|++|+||||+..++ .|+..++.+||+
T Consensus 48 K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~ 122 (331)
T PRK03910 48 KTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAE 122 (331)
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCE
Confidence 79999999999999886 5788874 59999999999999999999999998875 456899999999
Q ss_pred EEEeCCCCChHH-HHHHHHHHHHhCCCeE-ecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHH
Q 023801 71 LVLTDPAKGMKG-AVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 71 v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aGi~ 145 (277)
|+.+++..+..+ +...++++.++.+..+ +..++.|+.+ ..||.+++.||++|++. .||+||+|+|||||++|++
T Consensus 123 vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~ 201 (331)
T PRK03910 123 IHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLA 201 (331)
T ss_pred EEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHH
Confidence 999986423323 3445666666543333 4456778887 67889999999999953 6999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCCC--C--CccCccccccCeEEEeCHHHHHHHHHHHHHHcC
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG--F--VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 218 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~--~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~g 218 (277)
++|++.+|+++||||||++++.+....+ .....++++.+ . ..+.+..+++|+.+.|+|+|+++++++|++++|
T Consensus 202 ~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~g 281 (331)
T PRK03910 202 AGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEG 281 (331)
T ss_pred HHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999998764421111 01122333322 1 122356778999999999999999999999999
Q ss_pred Ceeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCC
Q 023801 219 LFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGER 256 (277)
Q Consensus 219 i~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~ 256 (277)
|++|| |||+++++++++.+++.. ++++||+|+ |||+.
T Consensus 282 i~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~ 320 (331)
T PRK03910 282 ILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAP 320 (331)
T ss_pred CccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChH
Confidence 99999 599999999998877654 578999998 99984
|
|
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=303.55 Aligned_cols=255 Identities=20% Similarity=0.252 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||.+..++..|+++|+ + +.|+++|+||||+|+|++|+++|++|+||||+.. +..|+.+|+.|||+|+.++.
T Consensus 103 K~R~a~~~~l~A~~~g~---~-~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g 178 (410)
T PLN02618 103 KINNAVAQALLAKRLGK---K-RIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSG 178 (410)
T ss_pred HHHHHHHHHHHHHHcCC---C-EEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCC
Confidence 79999999999998886 1 3344567999999999999999999999999863 35678899999999999953
Q ss_pred CCChHHHHH-HHHHHHHhCCCeEec-CCCC--C--CcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQ-KAEEILAKTPNAYML-QQFE--N--PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~-~a~~~~~~~~~~~~~-~~~~--~--~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...+.++.. ..++++++.++.+|+ .+.. + |.....+++++|.||.+|+ +..||+||+|||+||+++|++.
T Consensus 179 ~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~ 258 (410)
T PLN02618 179 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFH 258 (410)
T ss_pred CCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHH
Confidence 346777764 445566653344555 2221 2 2334689999999998776 3469999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|+. .+++|||||||.++. ++..++++ .+...||..+.. |. .+.....
T Consensus 259 ~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~ 337 (410)
T PLN02618 259 EFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGR 337 (410)
T ss_pred HHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcC
Confidence 9975 689999999999872 22223221 111223322111 11 1223357
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|+++|||+++++|+.+++++++++++. .++++||+++++.|+||++++
T Consensus 338 ~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 338 AEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred cEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHH
Confidence 79999999999999999999999999999999999999998763 368899999999999999975
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=318.31 Aligned_cols=255 Identities=20% Similarity=0.237 Sum_probs=198.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||++..++..++++|+. +.|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.
T Consensus 363 KdR~Al~~i~~A~~~G~~----~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g 438 (695)
T PRK13802 363 KINNALGQALLVKRMGKT----RVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLG 438 (695)
T ss_pred HHHHHHHHHHHHHHcCCC----CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCC
Confidence 799999999999999972 468899999999999999999999999999985 367899999999999999984
Q ss_pred CCChHHHHHHH-HHHHHhCC-CeEecCCCCCC----cchhhhhhchHHHHHhhhCC-----CCCEEEEecCCchhHHHHH
Q 023801 77 AKGMKGAVQKA-EEILAKTP-NAYMLQQFENP----ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 ~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~Ei~~Q~~~-----~~d~iv~pvG~Gg~~aGi~ 145 (277)
...+.++.+.+ +++.++.+ .+|+++++.|| .++.+||+++|.||++|+.+ .||+||+|||+||+++|++
T Consensus 439 ~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~ 518 (695)
T PRK13802 439 DRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVM 518 (695)
T ss_pred CCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHH
Confidence 23567775544 55665533 45677777654 34568999999999999952 6999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCCCCCCcccC-------------------------------ccCCCCC-ccCcccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ-------------------------------GIGAGFV-PGVLEVN 193 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~-------------------------------gl~~~~~-~~~~~~~ 193 (277)
.+|++ .+.+|||||||.++....+.+. .+..+ ||.-.-+ |..-...
T Consensus 519 ~~f~~-~~~vkligVE~~g~g~~~g~h~-~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~ 596 (695)
T PRK13802 519 NAFLD-DERVNLYGYEAGGNGPESGKHA-IRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLK 596 (695)
T ss_pred HHHHh-CCCceEEEEEecCCCccccchh-hhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHHHH
Confidence 99976 6889999999999743221100 00001 1110000 1000112
Q ss_pred ccCe--EEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCC---CCCeEEEEecCCCCCCcchh
Q 023801 194 IIDE--VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 194 ~~~~--~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~---~~~~vv~i~~~gG~~~~~~~ 261 (277)
..+. .+.|+|+|++++.+.|+++|||+++|+|+.+++++++++++... .+++||+++++.|+||++++
T Consensus 597 ~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 597 DIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred hcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHH
Confidence 2344 48999999999999999999999999999999999999876532 25699999999999999974
|
|
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=297.81 Aligned_cols=239 Identities=37% Similarity=0.559 Sum_probs=194.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|. ++|+++|+||||+|+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++. ++
T Consensus 40 K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~ 112 (306)
T PF00291_consen 40 KDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DV 112 (306)
T ss_dssp HHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--TH
T ss_pred ccccchhhhhhcccccc-----ceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEccc--cc
Confidence 79999999999999866 679999999999999999999999999999999999999999999999999985 33
Q ss_pred HHHHHHHHHHHH-------hCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCE--EEEecCCchhHHHHHHHHhh-
Q 023801 81 KGAVQKAEEILA-------KTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE- 150 (277)
Q Consensus 81 ~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~--iv~pvG~Gg~~aGi~~~~~~- 150 (277)
++..+.+.++++ ..++. ++|+ ++.+.+.||.++++||++|+. .||. ||+|+|+||+++|++.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~ 188 (306)
T PF00291_consen 113 EGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKEL 188 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccc--cCcc-cchhhhhhhhhcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhh
Confidence 433333333332 22222 6777 455558999999999999996 7766 99999999999999999999
Q ss_pred -cCCCcEEEEEecCCCCccC----CCCC----CCcccCccCCCC-Ccc----CccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 151 -KNPNIKLYGIEPTESPVLS----GGKP----GPHKIQGIGAGF-VPG----VLEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 151 -~~~~~~vigV~~~~~~~~~----~~~~----~~~~~~gl~~~~-~~~----~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
. |+++|++|++.+++++. .+.. ..+.++|++.+. .+. .+.++++++++.|+|+|++++++.|+++
T Consensus 189 ~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 267 (306)
T PF00291_consen 189 IL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAER 267 (306)
T ss_dssp CH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHH
T ss_pred hc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 7 89999999999886653 2332 113455777654 222 2445667788999999999999999999
Q ss_pred cCCeeeccHHHHHHHHHHHHhcCCC---CCCeEEEEec
Q 023801 217 EGLFVGISSGGAAAAAIEIAKRPEN---AGKLIVVIFP 251 (277)
Q Consensus 217 ~gi~~~p~sg~alaa~~~~~~~~~~---~~~~vv~i~~ 251 (277)
+|+++||++++++++++++.+++.. ++++||+|+|
T Consensus 268 ~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 268 EGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp HSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred cCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 9999999999999999999887642 7899999983
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=292.24 Aligned_cols=246 Identities=21% Similarity=0.259 Sum_probs=187.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEE--eeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH-HHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLI--EPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv--~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~-~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+.+++.+++++|. ++|+ ++|+||||+|+|++|+++|++|++|||...+.. +..+++.+||+++.++..
T Consensus 54 K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~ 128 (329)
T PRK14045 54 KIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAK 128 (329)
T ss_pred hHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCC
Confidence 89999999999999987 5576 589999999999999999999999999875433 666789999999988742
Q ss_pred CC---hHHHHHHHHHHHHhCCCeEec-CCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 78 KG---MKGAVQKAEEILAKTPNAYML-QQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 78 ~~---~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
.+ ++.+.+.++++.++.+..+++ +++.||.+ ..||.+...||++|+. .++|+||+|+|||||++|++++++.
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~ 207 (329)
T PRK14045 129 DSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAI 207 (329)
T ss_pred cccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 22 234556666666665445554 55568877 5566555569999995 3699999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCCC-----CCcccCccCCCC-CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-
Q 023801 151 KNPNIKLYGIEPTESPVLSGGKP-----GPHKIQGIGAGF-VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI- 223 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~~-----~~~~~~gl~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p- 223 (277)
.+|++|||+|++.+......++. ....+.+++.+. .+. +.+.+.+++..++ +|++++++.|+++|||++||
T Consensus 208 ~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpv 285 (329)
T PRK14045 208 LNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPV 285 (329)
T ss_pred hCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccc
Confidence 99999999999976321111100 011233444332 222 2233446655555 79999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 023801 224 SSGGAAAAAIEIAKRPENAGKLIVVIFPSFGER 256 (277)
Q Consensus 224 ~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~ 256 (277)
|||+++++++++++++.. +++||+|| |||..
T Consensus 286 ytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~~ 316 (329)
T PRK14045 286 YTGKAFYGLMDLAKKGEL-GEKILFIH-TGGIS 316 (329)
T ss_pred hHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCcc
Confidence 999999999999988643 67899999 88863
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=305.29 Aligned_cols=255 Identities=21% Similarity=0.231 Sum_probs=194.0
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+..++..++++|+ + +.|+++|+||||+|+|++|+++|++|+||||... +..|+.+|+.+||+|+.++..
T Consensus 302 K~r~al~~~~~a~~~g~---~-~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~ 377 (610)
T PRK13803 302 KINNALGQALLAKRMGK---T-RIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSG 377 (610)
T ss_pred HHHHHHHHHHHHHHcCC---C-EEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCC
Confidence 79999999999999885 1 3455789999999999999999999999999864 356889999999999999842
Q ss_pred -CChHHHHHHHHH-HHHhCCCeEecCCCC---C--CcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 78 -KGMKGAVQKAEE-ILAKTPNAYMLQQFE---N--PANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 78 -~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..+.++...+.+ +..+.++.+|+.++. + |.++..||++++.||++|+. ..||+||+|+|+||+++|++.
T Consensus 378 ~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~ 457 (610)
T PRK13803 378 SKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFY 457 (610)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHH
Confidence 356666544444 434444566664432 2 33434589999999999984 259999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCCC-cc--Ccccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGFV-PG--VLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~~-~~--~~~~~~~ 195 (277)
+|++ .++++||||||.++. ++..++++ .+...|+..+.+ |. .+.....
T Consensus 458 ~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~ 536 (610)
T PRK13803 458 HFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGR 536 (610)
T ss_pred HHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCC
Confidence 9964 789999999999862 23223221 112233332211 11 1223334
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|++.|||+++++||++++++++++.+. .++++||+++|++|+||++++
T Consensus 537 ~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 537 AIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred eEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHHH
Confidence 57999999999999999999999999999999999999876543 357899999978899998853
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=273.86 Aligned_cols=250 Identities=22% Similarity=0.251 Sum_probs=211.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+...++..+.+.|. .+|+++||||+|.|+|+++.+.|++|.|++|.+ .+..|+.+|..+|++++.+++ +
T Consensus 110 KDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~ 182 (411)
T COG0498 110 KDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--N 182 (411)
T ss_pred hhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--c
Confidence 89999999999999995 369999999999999999999999999999998 999999999999999999996 7
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCC-----
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNP----- 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~----- 153 (277)
|+++.+.+++++++. ++++....-||.. ++||+|+++||++|++ ..||+|++|+|+||++.|+++++++..+
T Consensus 183 fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~ 260 (411)
T COG0498 183 FDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKID 260 (411)
T ss_pred HHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchh
Confidence 899999999999876 5577777788888 8999999999999997 4799999999999999999999999765
Q ss_pred -CcEEEEEecCCCCccCCC-CC---C-CcccCccCCCCCccCcc------ccccCeEEEeCHHHHHHHHHHHHHHcCCee
Q 023801 154 -NIKLYGIEPTESPVLSGG-KP---G-PHKIQGIGAGFVPGVLE------VNIIDEVVQVSSDEAIETAKLLALKEGLFV 221 (277)
Q Consensus 154 -~~~vigV~~~~~~~~~~~-~~---~-~~~~~gl~~~~~~~~~~------~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ 221 (277)
.++..+|+++++.++... +. . .+....|..+ .|.++. .+.....+.|+|+|++++++.+++++|+++
T Consensus 261 ~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~-~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~ 339 (411)
T COG0498 261 KAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIG-NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILI 339 (411)
T ss_pred cCchhhhhhHhhccchhhhcccccccccccccccccC-CCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCccc
Confidence 478899999998765432 11 1 1223333322 132221 222355999999999999999999999999
Q ss_pred eccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 222 GISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 222 ~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
||+||+++++++++.++...++.++|++.|.+|.|+.++
T Consensus 340 eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 340 EPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred CccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 999999999999998872246789999998889999886
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=212.25 Aligned_cols=249 Identities=20% Similarity=0.241 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCC--chHHHHHHHHHHHCCCeEEEEeCCCC----CHHHHHHHHHcCCEEEEeCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSs--GN~g~a~A~aa~~~Gl~~~vvvp~~~----~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|=-.+.+.+|+++|. +++|++.+ .||.+++|++|+++|++|++++.... -..++...+.+|+++..++.
T Consensus 50 RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~ 124 (323)
T COG2515 50 RKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDA 124 (323)
T ss_pred HHHHHHHhhhhhcCC-----cEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecC
Confidence 444566677777776 88999866 99999999999999999999997764 23467888899999999997
Q ss_pred CCCh--HHHHHHHHHHHHhCCCeEec-CCCC-CCcchhhhhhchHHHHHhhhC--CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 77 AKGM--KGAVQKAEEILAKTPNAYML-QQFE-NPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 77 ~~~~--~~~~~~a~~~~~~~~~~~~~-~~~~-~~~~~~~g~~t~~~Ei~~Q~~--~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
..++ +...+..++..++.++..|+ +... ||.. ..||..++.||.+|.. .++|.||+++|||||.||+..++..
T Consensus 125 ~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~ 203 (323)
T COG2515 125 GTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQ 203 (323)
T ss_pred CCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhh
Confidence 5555 33344444444544454444 4333 4444 6799999999999986 5799999999999999999999999
Q ss_pred cCCCcEEEEEecCCCCccCCCCC---CCcccCccCCC-CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cH
Q 023801 151 KNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAG-FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SS 225 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~s 225 (277)
.+++.+|||+.....+.....+. ..+.++-++.. ...+.+..+|....|+++.+|.+++++.+++.|||++|| |+
T Consensus 204 ~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYt 283 (323)
T COG2515 204 LGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYT 283 (323)
T ss_pred ccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccc
Confidence 99999999999888754321111 11112222222 223456678888899999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCCCC-CCeEEEEecCCCCCCc
Q 023801 226 GGAAAAAIEIAKRPENA-GKLIVVIFPSFGERYL 258 (277)
Q Consensus 226 g~alaa~~~~~~~~~~~-~~~vv~i~~~gG~~~~ 258 (277)
|+++.+++++++++.++ +.+|++|| +||..-+
T Consensus 284 gKam~Glid~~~k~~f~~~~~vLfiH-tGG~~gl 316 (323)
T COG2515 284 GKAMYGLIDLARKGEFPDGSPVLFIH-TGGAPGL 316 (323)
T ss_pred hHHHHHHHHHHhcccCCCCCceEEEE-cCCccch
Confidence 99999999999998854 55578887 8887443
|
|
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=223.48 Aligned_cols=245 Identities=16% Similarity=0.105 Sum_probs=186.4
Q ss_pred CChhHHH---HHHHHHHcCCCCCCCcEEEeeCCchHHHHH-HHHHHHCCCeEEEEeCCC-CCHHHHHHHHHc-CCEE--E
Q 023801 1 MCRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQYRLIITMPAS-MSLERRIILRAF-GAEL--V 72 (277)
Q Consensus 1 ~dR~a~~---~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~-A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~-Ga~v--~ 72 (277)
|||++.. ++.++++ +. ..+|+++||||+|.|+ |.++.+.|++|+|++|++ +++.+..+|..+ |++| +
T Consensus 112 KD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi 186 (462)
T PRK09225 112 KDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVV 186 (462)
T ss_pred hhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEE
Confidence 8999988 8899987 42 2679999999999999 799999999999999996 899999999999 9987 5
Q ss_pred EeCCCCChHHHHHHHHHHHHh------CCCeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHH
Q 023801 73 LTDPAKGMKGAVQKAEEILAK------TPNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITG 143 (277)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aG 143 (277)
.+++ +|+++.+.++++..+ . +++-.+.. ||.. +.||.++++|+++|+.. .||+|++|+|+||.+.|
T Consensus 187 ~V~G--~fDD~q~~vk~~~~d~~~~~~~-~l~saNSi-N~~R-i~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a 261 (462)
T PRK09225 187 AVEG--NFDDCQALVKAAFNDEELKEKL-KLSSANSI-NIGR-LLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILA 261 (462)
T ss_pred EeCC--CHHHHHHHHHHHhhchhhhhcC-ceEEEecc-CHHH-HHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHH
Confidence 5664 789998888776543 3 45555553 7777 88999999999999953 39999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCccC----CCCCC-----CcccCccCCCCCccCccc---------------------c
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVLS----GGKPG-----PHKIQGIGAGFVPGVLEV---------------------N 193 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~~----~~~~~-----~~~~~gl~~~~~~~~~~~---------------------~ 193 (277)
.+.+.+.-.|-+|+|+++ ..++.+. .+... .+...++... .|.++.+ .
T Consensus 262 ~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~ 339 (462)
T PRK09225 262 GYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEE 339 (462)
T ss_pred HHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999844334667999997 4443331 22211 1222233221 1221111 0
Q ss_pred ccC---------------eEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 194 IID---------------EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 194 ~~~---------------~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
.-. ..+.|+|+|++++++.+++++|+++||.||++++++.++.+ ++.++|++.|..|.|+.
T Consensus 340 ~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~~~~~~----~~~~~V~l~Ta~p~Kf~ 415 (462)
T PRK09225 340 KGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD----PGEPGVVLSTAHPAKFP 415 (462)
T ss_pred cCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHhhC----CCCCEEEEecCCccCCH
Confidence 011 56999999999999999999999999999999999987632 45678999989999987
Q ss_pred chh
Q 023801 259 SSV 261 (277)
Q Consensus 259 ~~~ 261 (277)
+.+
T Consensus 416 ~~v 418 (462)
T PRK09225 416 EVV 418 (462)
T ss_pred HHH
Confidence 743
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=217.21 Aligned_cols=248 Identities=14% Similarity=0.056 Sum_probs=186.1
Q ss_pred CChhHHHH---HHHHHHcCCCCCCCcEEEeeCCchHHHH-HHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCC---EEE
Q 023801 1 MCRIGYSM---ISDAEAKGLITPGESVLIEPTSGNTGIG-LAFMAAAKQYRLIITMPAS-MSLERRIILRAFGA---ELV 72 (277)
Q Consensus 1 ~dR~a~~~---v~~a~~~g~l~~g~~~vv~aSsGN~g~a-~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga---~v~ 72 (277)
|||++..+ |.+++++.. +..+|+++||||+|.| ++.++.+.|++|+|++|++ +++.+..+|..+|+ +++
T Consensus 111 KD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi 187 (460)
T cd01560 111 KDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVV 187 (460)
T ss_pred HHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEE
Confidence 79998866 777876521 2267999999999999 5899999999999999996 99999999999997 788
Q ss_pred EeCCCCChHHHHHHHHHHHHhC-----CCeEecCCCCCCcchhhhhhchHHHHHhhhCC----CCCEEEEecCCchhHHH
Q 023801 73 LTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGTITG 143 (277)
Q Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~----~~d~iv~pvG~Gg~~aG 143 (277)
.+++ +|+++.+.++++..+. -+++-.+. .|+.. +.+|.+.++|+++|+.. .|++|++|+|+||.+.|
T Consensus 188 ~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a 263 (460)
T cd01560 188 AVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILA 263 (460)
T ss_pred EEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHH
Confidence 8886 7899988887765431 13444444 36766 78999999999999953 58999999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCcc----CCCCC--C----CcccCccCCCCCccCcc---cc---c-------------
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVL----SGGKP--G----PHKIQGIGAGFVPGVLE---VN---I------------- 194 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~----~~~~~--~----~~~~~gl~~~~~~~~~~---~~---~------------- 194 (277)
.+.+.+.-.|-.|+|+++.... .+ ..+.. . .+...++... .|.++. +. .
T Consensus 264 ~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~~~~~m~~~~ 341 (460)
T cd01560 264 GYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTKVKMLMEEFE 341 (460)
T ss_pred HHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9998665457679999765443 22 12221 1 1222222221 122211 00 0
Q ss_pred -----------------cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 023801 195 -----------------IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERY 257 (277)
Q Consensus 195 -----------------~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~ 257 (277)
.-..+.|+|+|++++++.+++++|+++||.||++++++.++.++ ++..+|++.|..|.|+
T Consensus 342 ~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~~~~~~~---~~~~~V~l~Ta~p~Kf 418 (460)
T cd01560 342 ATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKS---PGTPGVVLSTAHPAKF 418 (460)
T ss_pred hcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHHHHHHhc---cCCCEEEEecCCcccC
Confidence 01568999999999999999999999999999999999887654 3457899998889988
Q ss_pred cch
Q 023801 258 LSS 260 (277)
Q Consensus 258 ~~~ 260 (277)
.+.
T Consensus 419 ~~~ 421 (460)
T cd01560 419 PEA 421 (460)
T ss_pred HHH
Confidence 764
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=191.78 Aligned_cols=251 Identities=24% Similarity=0.281 Sum_probs=182.9
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-CCCh
Q 023801 5 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP-AKGM 80 (277)
Q Consensus 5 a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~-~~~~ 80 (277)
+...+.-|+++|+ ++.|.+...|.||.|+|.+|+++|++|+|||-.. -...++.+|+.+||+|+.|.. +...
T Consensus 91 ~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TL 166 (396)
T COG0133 91 ALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTL 166 (396)
T ss_pred HHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchH
Confidence 4556777889998 3567788889999999999999999999999753 244678899999999999973 4566
Q ss_pred HHHHHHHHHH-HHhCCCeEec-----CCCCCCcchhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHHHHhh
Q 023801 81 KGAVQKAEEI-LAKTPNAYML-----QQFENPANPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKE 150 (277)
Q Consensus 81 ~~~~~~a~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~~~~~ 150 (277)
.++..+|.+. .......+|+ .|.--|.....-|+.||.|.-+|+. .-||.||.|||+|++..|++..|..
T Consensus 167 KDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~ 246 (396)
T COG0133 167 KDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID 246 (396)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC
Confidence 7777766544 4444455664 2333355556689999999988863 3499999999999999999988875
Q ss_pred cCCCcEEEEEecCCCC--------ccCCCCCCC--------------------cccCccCCCCC-ccC--ccccccCeEE
Q 023801 151 KNPNIKLYGIEPTESP--------VLSGGKPGP--------------------HKIQGIGAGFV-PGV--LEVNIIDEVV 199 (277)
Q Consensus 151 ~~~~~~vigV~~~~~~--------~~~~~~~~~--------------------~~~~gl~~~~~-~~~--~~~~~~~~~~ 199 (277)
.+++++||||+.+.- ++..++++. +...||.-+-+ |.. +...--.+.+
T Consensus 247 -d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~ 325 (396)
T COG0133 247 -DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYV 325 (396)
T ss_pred -CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEE
Confidence 378999999998752 233333310 00011111101 110 1111123589
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 200 QVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 200 ~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
.|+|+|++++.+.|.+.|||+.-..|+.|++.+++++++.. +++.+|+-+++.|+|++.++
T Consensus 326 ~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKDv~tv 386 (396)
T COG0133 326 SITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKDVFTV 386 (396)
T ss_pred ecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCcccHHHH
Confidence 99999999999999999999999999999999999987764 45566677767789988764
|
|
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=176.79 Aligned_cols=261 Identities=22% Similarity=0.254 Sum_probs=189.2
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAK 78 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~~~ 78 (277)
-+|....-.++..|. .+|+| ...|.+|.|++++|+.+|++|+|||-.. ..+-++.+|+.|||+|+..+...
T Consensus 113 NTAlAqaYyak~eg~-----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~ 187 (432)
T COG1350 113 NTALAQAYYAKKEGA-----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSEL 187 (432)
T ss_pred chHHHHHHHHHhcCc-----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcch
Confidence 356666677777776 44554 4569999999999999999999999764 35667889999999999887521
Q ss_pred C----------------hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhh---CCCCCEEEEecCCch
Q 023801 79 G----------------MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS---GGRIDALVSGIGTGG 139 (277)
Q Consensus 79 ~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~---~~~~d~iv~pvG~Gg 139 (277)
. .--++..|.+.+-++++..|....--+. ...|+..+|+|..+|+ ++.||++|.+||+|+
T Consensus 188 Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGS 266 (432)
T COG1350 188 TEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGS 266 (432)
T ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCC
Confidence 1 1115666777766665444433222112 3679999999996665 567999999999999
Q ss_pred hHHHHHHHHhhc---C-CCcEEEEEecCCCCccCCCCCCC-----------cccCccCCCCCccCcc-------------
Q 023801 140 TITGAGKFLKEK---N-PNIKLYGIEPTESPVLSGGKPGP-----------HKIQGIGAGFVPGVLE------------- 191 (277)
Q Consensus 140 ~~aGi~~~~~~~---~-~~~~vigV~~~~~~~~~~~~~~~-----------~~~~gl~~~~~~~~~~------------- 191 (277)
+++|+..-|-.. + ...++|+|+|..||.+..++..- -.+-.||.+.+|+.+.
T Consensus 267 Nfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtl 346 (432)
T COG1350 267 NFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTL 346 (432)
T ss_pred ccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHH
Confidence 999998766432 2 23899999999999887654310 1244666666655443
Q ss_pred ----ccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 192 ----VNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 192 ----~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
..-+-+....+.+|++++.+.|++.|||+.-|.|+.|+.++++.+.+.+..+++.|+++.-+|+-.+|-.-|+++.
T Consensus 347 s~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl 426 (432)
T COG1350 347 SLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYL 426 (432)
T ss_pred HHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHh
Confidence 2223457899999999999999999999999999999999999887766444444444445556557766788776
Q ss_pred Hh
Q 023801 268 KE 269 (277)
Q Consensus 268 ~~ 269 (277)
..
T Consensus 427 ~g 428 (432)
T COG1350 427 EG 428 (432)
T ss_pred hh
Confidence 53
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=164.90 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCC-CCC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDP-AKG 79 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~-~~~ 79 (277)
.|...+..+.+.|+ ++.|.+...|.||.|+|.+|+++|++|+|+|-.. ..+-++.+||.+||+|+.+.. ...
T Consensus 158 nav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~t 233 (477)
T KOG1395|consen 158 NAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRT 233 (477)
T ss_pred cHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCcee
Confidence 35556667778887 2566777889999999999999999999999653 356789999999999999974 223
Q ss_pred hHHHHHHHHHHHHhC-CCeEec-----CCCCCCcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHHHHh
Q 023801 80 MKGAVQKAEEILAKT-PNAYML-----QQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLK 149 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~-~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~~~~ 149 (277)
.+++-..+-++.-.+ .-.+|+ .|+--|.....-+.+|+-|-..|+ +..||+||.++|+|++.+|+..-|.
T Consensus 234 Lrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~ 313 (477)
T KOG1395|consen 234 LRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFI 313 (477)
T ss_pred hhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhh
Confidence 344444443333222 122332 222223333345788888887665 3459999999999999999998887
Q ss_pred hcCCCcEEEEEecCCCCc----c----CCCCCCC-----c--ccCccCCCCCccCc----------------cccccCeE
Q 023801 150 EKNPNIKLYGIEPTESPV----L----SGGKPGP-----H--KIQGIGAGFVPGVL----------------EVNIIDEV 198 (277)
Q Consensus 150 ~~~~~~~vigV~~~~~~~----~----~~~~~~~-----~--~~~gl~~~~~~~~~----------------~~~~~~~~ 198 (277)
.. ..++.|+|+..+.+. . ..++.+. + ..+..|..+.|..+ ...--.++
T Consensus 314 ~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~ 392 (477)
T KOG1395|consen 314 RD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEF 392 (477)
T ss_pred cc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeE
Confidence 53 457888888776532 1 1122110 0 11111111111111 11122369
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 199 VQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 199 ~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
+.|+|.|++++.++|.+.|||+.-|.+..|+++..++.+.. .+++.+|+-+++.|+|++.
T Consensus 393 isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDvq 452 (477)
T KOG1395|consen 393 ISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDVQ 452 (477)
T ss_pred EecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchHH
Confidence 99999999999999999999999998899999988887765 3788888888888887764
|
|
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=157.60 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=180.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 103 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (277)
.+.+.|+||.|.|+-..++.+|++++|-|..++...|.+++|..|.+|+.... +|..+.+.-++.++..|..||++..
T Consensus 162 sIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~--DY~~AVeeGRk~a~~DP~c~FiDDE 239 (443)
T COG3048 162 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQ--DYGVAVEEGRKEAESDPNCFFIDDE 239 (443)
T ss_pred eEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecc--hhhHHHHHhhhhhccCCceEEeccc
Confidence 68889999999999999999999999999999999999999999999999984 8899999999999999988999877
Q ss_pred CCCcchhhhhhchHHHHHhhhCC--------CCCEEEEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccCCC---
Q 023801 104 ENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGG--- 171 (277)
Q Consensus 104 ~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~iv~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~~~--- 171 (277)
++-.. ..||...+.-+-.|+.. .|-.|..|+|-||.-.|++.++|.. +.++.++-+||..+|++..+
T Consensus 240 ~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~t 318 (443)
T COG3048 240 NSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYT 318 (443)
T ss_pred chhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhh
Confidence 66555 78999999999999842 3668999999999999999999976 57899999999999987521
Q ss_pred ------------CCCCcccCccCCCCCccC---ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHH
Q 023801 172 ------------KPGPHKIQGIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIA 236 (277)
Q Consensus 172 ------------~~~~~~~~gl~~~~~~~~---~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~ 236 (277)
..+.+.++||+.+..... .....+++.|+|+|+..++...+|++.||+.+|||+-+++.+-.++.
T Consensus 319 GlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 319 GLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred ccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 123455678877653322 34577899999999999999999999999999999888887766554
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.69 Score=37.19 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHHHCCCeE-EEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRL-IITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~-~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+..+++.+|.++ .-+.+.+.-..-+..+...|-+|.++++. .....+.+..+.+++|+.-.+..++.+.. ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 578899999999886 33323333344566667789999999963 34455666777788877554433322222 122
Q ss_pred hhchHHHHHhhhCCCCCEEEEecCCchh
Q 023801 113 YETTGPELWKGSGGRIDALVSGIGTGGT 140 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~ 140 (277)
...+..+|-+ ..||.|+++.|+---
T Consensus 90 ~~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 90 EEAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 2333333322 369999999998753
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=2.1 Score=38.20 Aligned_cols=57 Identities=26% Similarity=0.436 Sum_probs=44.4
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+.+++|.+.||.+.+|.-|..+--.|+.+|...+++ .. +..|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~-~~--s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV-VS--SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEE-ec--CHHHHHHHHhcCCCEEEc
Confidence 5778889888999999999999999999999843443 22 336666889999976654
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.56 E-value=2.2 Score=38.24 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+|.+.+|. .+|.-|...+..++.+|.+++++.+...++.|++.++.+|++.
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 4566565555 5799999999999999998666655555678889999999985
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=89.93 E-value=3.6 Score=33.00 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=66.0
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+.++++.+|.+..--++. +.-..-...+...+.+|.++++. .+...+.++.+.+++|+...+..++.+.. ...
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~--~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK--PEVLEKAAERLRARYPGLKIVGYHHGYFG-PEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhh
Confidence 567889999999872222222 11223455556678999999863 23444555677778877554432322222 111
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 113 YETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.. +|.+++. ..||.|+++.|+---=. .....+...+..-+++|
T Consensus 88 ~~----~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 88 EE----EIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred HH----HHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence 11 2444442 35999999999864332 22333443444445555
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.46 E-value=5.7 Score=35.45 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
++.+..+++|.+ |+...+|.-|.+++.+|+.+|.+++++ ..++.|+..++.+|++.++.
T Consensus 158 a~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 158 AAVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 444566788865 444445999999999999999974433 33567888888999965543
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.08 E-value=3.8 Score=30.56 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=19.9
Q ss_pred CCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 127 RIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 127 ~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
.+|.+|-++|++.++.-....++. .=+++-+-
T Consensus 58 ~~d~vid~~g~~~~~~~~~~~l~~---~G~~v~vg 89 (130)
T PF00107_consen 58 GVDVVIDCVGSGDTLQEAIKLLRP---GGRIVVVG 89 (130)
T ss_dssp SEEEEEESSSSHHHHHHHHHHEEE---EEEEEEES
T ss_pred cceEEEEecCcHHHHHHHHHHhcc---CCEEEEEE
Confidence 588999999887766554444443 33555543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.8 Score=34.24 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=43.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|.-|.++...|+.+|.+++++. .++.+...++.+|++-++.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFN 194 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEe
Confidence 456778886666776789999999999999999855443 3457888888899854443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.66 E-value=4 Score=35.22 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++++....+|.+ |+....|.-|..++..|+.+|.+.++++ +.++.|++..+.+|++.+
T Consensus 112 al~~~~~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 112 ALEAAGDLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred HHHhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 344434457755 4555679999999999999999745544 446678888888998543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.6 Score=35.50 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=43.1
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.++..+.+|.+.+| ..+|.-|..++..|+.+|.+.+++. +..+.+++..+.+|++.
T Consensus 177 a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 177 GAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCET 233 (393)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeE
Confidence 445567788865445 7779999999999999999876643 22467888889999974
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=87.90 E-value=9.6 Score=31.71 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=59.6
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE 104 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 104 (277)
+|+..+|+.|+.++-+....+.++++++... +......++..|++++..+- ++.......+ +.-...+.+.+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~----~~~~~l~~al-~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY----DDPESLVAAL-KGVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T----T-HHHHHHHH-TTCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc----CCHHHHHHHH-cCCceEEeecCcc
Confidence 6888999999999999999999999988776 44567778889999986653 2222222222 2222344444443
Q ss_pred CCcchhhhhhchHHHHHhhhCCCCCEEE
Q 023801 105 NPANPKIHYETTGPELWKGSGGRIDALV 132 (277)
Q Consensus 105 ~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv 132 (277)
++.. ......+ .+...+. + +.++|
T Consensus 76 ~~~~-~~~~~~l-i~Aa~~a-g-Vk~~v 99 (233)
T PF05368_consen 76 HPSE-LEQQKNL-IDAAKAA-G-VKHFV 99 (233)
T ss_dssp CCCH-HHHHHHH-HHHHHHH-T--SEEE
T ss_pred hhhh-hhhhhhH-HHhhhcc-c-cceEE
Confidence 3332 3333444 3334443 2 77775
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.2 Score=33.38 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=72.6
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
++|-.-..|+-|+++|..++.+|++++.+-|...+.. .....+.+. . +.++ +.++- +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~----~l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V----SLDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S----SHHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e----ehhh-------hcchh-hhhhhhh
Confidence 4688889999999999999999999998877654332 334445422 1 2232 22333 4443322
Q ss_pred CCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHH--HHHHHHhhcCCCcEEEEEecCCC
Q 023801 103 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT--GAGKFLKEKNPNIKLYGIEPTES 165 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~a--Gi~~~~~~~~~~~~vigV~~~~~ 165 (277)
-.++.+ ...+..|.++++ +++.+++-+|-|+++- .+..++++ ....-.+.++...
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVFEP 156 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCC
Confidence 223332 456778889998 5799999999999874 44555554 3345555554433
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=4 Score=36.57 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=47.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+++.+..++||. .|....-|-.|....-+|+.+|.+++.+ +.++.|++..+.+||+.+...
T Consensus 157 ~alk~~~~~pG~-~V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 157 RALKKANVKPGK-WVAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINS 217 (339)
T ss_pred eehhhcCCCCCC-EEEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEc
Confidence 455667788994 5888888888888888888888777776 556788888888898877765
|
|
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.60 E-value=4.1 Score=35.61 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEee-CCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~a-SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~~ 76 (277)
+|+-||++-.+ |.+| +.|+-- ...--|+++--.|+.+||+.+=++..... +.-.++++.+||+-++.+.
T Consensus 147 TAyrmL~dfv~---L~~G-D~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 147 TAYRMLKDFVQ---LNKG-DSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHHHh---cCCC-CeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHH
Confidence 57778888876 5566 445543 33456778888999999999988876554 4456778999999999874
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=87.28 E-value=8.4 Score=31.72 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHc--CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 3 RIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 3 R~a~~~v~~a~~~--g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|++.+.++.+.+. +.....+++++.-..||.|..+|......|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5777888888776 222222356888888999999999999999987744
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=86.36 E-value=5.1 Score=35.34 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=46.2
Q ss_pred HcCCCCCCCcEEEeeCC---chHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSs---GN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
..|.++ | .+|+-... +|.++|+..+++++|++++++.|+.. ++..+..++..|+++..++
T Consensus 144 ~~g~l~-g-~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD-G-LKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC-C-CEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 356653 4 34666666 59999999999999999999999874 5555667777899988776
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.25 E-value=8.2 Score=34.11 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=42.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+++.+.+.+|.+.+|...+|..|.+++..|+.+|.+++++.. +. +...++.+|++.
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~ 224 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADT 224 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeE
Confidence 345667888877777777799999999999999999655542 22 667778888863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=85.83 E-value=22 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=41.7
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+++.+..|..|+.+|-.-.+.|++++++ +.++.+.+.++.+|.+++.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 57999999999999999999999998877 4456778888888877766664
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.60 E-value=6.2 Score=36.73 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
|+.++.++.+++...+...+.+|+....||-|..+|.....+|.+++.+-
T Consensus 209 ~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 209 FGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 67778888877654444445689999999999999999999999988853
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.36 E-value=13 Score=32.93 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++...+++|.+.+|.+ +|..|.+++..|+.+|.+.++++ ..++.+...++.+|++.++
T Consensus 165 l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 3556677886655654 68999999999999998544443 2355677777778875443
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.9 Score=35.87 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=41.7
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 023801 198 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIF 250 (277)
Q Consensus 198 ~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~ 250 (277)
...|+++|+.+++...++..+.+++|.+|++.-...+...+.. +.-.++++-
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~-ps~~~i~ls 199 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQ-PSIPYICLS 199 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccC-CCCceEEec
Confidence 4678999999999999999999999999999998888877653 333344443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.96 E-value=12 Score=33.54 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+.+.+++|.+.+|. .+|--|.+++..|+.+|.+.++++ ..++.|++.++.+|++-+
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHT 225 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceE
Confidence 455677888665555 579999999999999998744444 234567888888888543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.94 E-value=13 Score=32.89 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=42.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~-~Ga~v~ 72 (277)
+.+.+++|.+.+|...+|.-|.+++..|+.+|.++++.. .++.|.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCcee
Confidence 446788887777777789999999999999999855443 24577787777 888543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.3 Score=38.43 Aligned_cols=54 Identities=22% Similarity=0.146 Sum_probs=43.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
..++..+||..+.-+|+.+..++=.-.|++|.-+.......+...|++++++|-
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDI 94 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-B
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEec
Confidence 478999999999999999843333378889999899999999999999999984
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=84.07 E-value=22 Score=34.64 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=64.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
.+++.+..|..|+.+|-.-...|++++++ +.++.+++.++.+|..++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 46899999999999999888889988776 33456677777776665554431
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 103 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
. .|++++.+ .+.|.+|+.++.=-.-.-+....|+.+|+.+|++-.
T Consensus 453 -----~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 -----Q---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -----C---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 1 13333332 246777777776555555666677777888887654
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=83.94 E-value=14 Score=33.29 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+...+++|.+.+|. .+|.-|..++..|+.+|.+.++++ ..++.|++..+.+|++.+
T Consensus 185 ~~~~i~~g~~VlV~-G~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 185 NTAGVRPGQSVAVV-GLGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATAT 240 (371)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceE
Confidence 45667888665565 579999999999999998534433 335677888888998543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.47 E-value=6 Score=35.07 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++..+++|.+.+|.. .|.-|.+++..|+.+|.+++++ ..++.|++.++.+|++.++
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~---~~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVM---TRGAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEE---eCChHHHHHHHHhCCceec
Confidence 3446778886655554 5888999999999999874443 2245678889999997543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.40 E-value=20 Score=31.81 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=42.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
++...+.+|.+.+| ..+|..|.+++..|+.+|.+.++++.. ++.|...++.+|++.+
T Consensus 167 ~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 167 VDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 35667788855444 667999999999999999876665443 4567777788888543
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=83.24 E-value=8.3 Score=33.85 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=43.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|--|.+++..|+..|.+++++.. ++.|...++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 5667888866666666899999999999999997655433 456788888899865443
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family | Back alignment and domain information |
|---|
Probab=83.22 E-value=12 Score=30.17 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHHHHHHHCCCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhh
Q 023801 34 GIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 112 (277)
Q Consensus 34 g~a~A~aa~~~Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 112 (277)
|..+.++++.+|.+..--++. +.-..-.......|..|.++++. .....+.++.+.+++|+.-.+.. +.+....
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~--~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~-- 87 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK--PDVLQQLKVKLIKEYPKLKIVGA-FGPLEPE-- 87 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHHHHHHCCCCEEEEE-CCCCChH--
Confidence 467889999998763211121 11122344455678899999863 24455666777778876543322 2222211
Q ss_pred hhchHHHHHhhhC-CCCCEEEEecCCch
Q 023801 113 YETTGPELWKGSG-GRIDALVSGIGTGG 139 (277)
Q Consensus 113 ~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg 139 (277)
--.+|.+++. ..||.++++.|+=-
T Consensus 88 ---~~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 88 ---ERKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred ---HHHHHHHHHHHcCCCEEEEEcCCcH
Confidence 1134555543 35999999998753
|
The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.13 E-value=33 Score=30.42 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.+...+++|.+.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+....+.+|++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~ 213 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGAT 213 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCc
Confidence 455677888665555 57899999999999999865444433 34667777778874
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=22 Score=31.76 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHH-HcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~-~~Ga~v~~ 73 (277)
+.+.+++|.+.+|...+|.-|..+...|+.+|.+++++ ..++.|...++ .+|++-++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~---~~~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGS---AGSSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE---cCCHHHHHHHHHhcCCCEEE
Confidence 34667888676677777999999999999999875443 23456777776 68986544
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=82.70 E-value=18 Score=28.74 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=55.3
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 96 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (277)
.+-.| +.++...-|+-|+++|...+.+|.+++|+ +..|.+..+....|=++...+ + .+. ..+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~---e~DPi~alqA~~dGf~v~~~~------~-------a~~-~ad 80 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGLGARVTVT---EIDPIRALQAAMDGFEVMTLE------E-------ALR-DAD 80 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE-HH------H-------HTT-T-S
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhCCCEEEEE---ECChHHHHHhhhcCcEecCHH------H-------HHh-hCC
Confidence 34444 56899999999999999999999888886 456667666667777765321 1 112 224
Q ss_pred eEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCc
Q 023801 97 AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 138 (277)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~G 138 (277)
.+ +.--.+. ..+-.|.++|+ +.+.|++.+|+-
T Consensus 81 i~-vtaTG~~-------~vi~~e~~~~m--kdgail~n~Gh~ 112 (162)
T PF00670_consen 81 IF-VTATGNK-------DVITGEHFRQM--KDGAILANAGHF 112 (162)
T ss_dssp EE-EE-SSSS-------SSB-HHHHHHS---TTEEEEESSSS
T ss_pred EE-EECCCCc-------cccCHHHHHHh--cCCeEEeccCcC
Confidence 33 3222221 22456888888 457899888864
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=82.67 E-value=9.8 Score=34.65 Aligned_cols=57 Identities=28% Similarity=0.332 Sum_probs=43.3
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
...+.+|.+.+|...+|.-|.+++..|+.+|.+.+++. .+..+...++.+|+..++-
T Consensus 184 ~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 184 PATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred ccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 35567776666666779999999999999999865543 3456778888899876654
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=82.29 E-value=16 Score=33.32 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=46.5
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+..+..+||-.+..+|+-+-..|=.-.|++|.-+.......+-..||+.+++|-
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDI 103 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEec
Confidence 368888999999999988655776678999999999999999999999999984
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.00 E-value=18 Score=31.92 Aligned_cols=51 Identities=25% Similarity=0.273 Sum_probs=37.2
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
.++++.+.+|...+|..|.+++..|+.+|++++++.. ++.+...++.+|++
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 212 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDV---GDEKLELAKELGAD 212 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 5677767666777778999999999999997655533 33566666777754
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.93 E-value=22 Score=31.29 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred HcCCCCCC--CcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 023801 14 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g--~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~-~Ga~v~~~ 74 (277)
+.+.+++| .+.+|...+|.-|.++...|+.+|. +++++.+ ++.+.+.++. +|++-++.
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 45556665 5666666679999999999999998 5554422 4466677665 88865443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.30 E-value=21 Score=31.48 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=37.3
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
-.+.++.+.+|.. +|.-|.+++..|+.+|.+.+++.+ ++.++..++.+|++-
T Consensus 159 ~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 159 SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 3567775555555 899999999999999998555433 345677778888743
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=81.26 E-value=12 Score=33.02 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=40.5
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++++..+.+|.+.+|. .+|--|.+++..|+.+|.+-++++ ..++.|++.++.+|++.++
T Consensus 155 ~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~--~~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 155 ALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGV--DPSPERLELAKALGADFVI 213 (339)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEE
Confidence 3444556777665665 569999999999999999833333 2345677777888885443
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=81.20 E-value=12 Score=33.31 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=45.4
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
++.+-.+.||.. +.....|-.|.----+|+.+|++++++ ...+..|.+.++.+||+..+...
T Consensus 173 pLk~~g~~pG~~-vgI~GlGGLGh~aVq~AKAMG~rV~vi--s~~~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 173 PLKRSGLGPGKW-VGIVGLGGLGHMAVQYAKAMGMRVTVI--STSSKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hhHHcCCCCCcE-EEEecCcccchHHHHHHHHhCcEEEEE--eCCchhHHHHHHhcCcceeEEec
Confidence 444445679965 444444448888888999999999988 33344788899999999988764
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.07 E-value=11 Score=33.38 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+...+++|.+.+|. .+|..|.++...|+.+|.+.++++. .++.|++.++.+|++-+
T Consensus 153 ~~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 153 FHLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQT 209 (347)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceE
Confidence 455667778665555 6799999999999999987554442 25567777788888543
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=80.78 E-value=19 Score=31.29 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=38.1
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++...+.+|.+.+|...+|.-|.+++..|+.+|.+.+++... ..+...++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 344667788666666667999999999999999886665332 3445555556763
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=18 Score=32.07 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++++....+|.+.+|. .+|.-|.+....++.+|.+.++++. .++.|++..+.+|++.++
T Consensus 161 al~~~~~~~g~~VlV~-G~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 161 AAHQAGDLQGKRVFVS-GVGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLV 219 (343)
T ss_pred HHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEe
Confidence 3344444567555554 5799999999999999986444433 346788888899997544
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.68 E-value=8.6 Score=34.15 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+|-+++.+++| .+++.-..|--|..+-.+|+.+|-+=+|++ +..+.+++..+.+||+++.-.
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeec
Confidence 56678889999 568899999999999999999998877664 345678888888999887665
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=80.63 E-value=26 Score=30.90 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=39.8
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
+...+.+|...+| ..+|..|.++...|+..|++.++.+... +.+...++.+|++
T Consensus 162 ~~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 162 VSAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 3556777766556 5689999999999999999755554433 4667777888884
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=13 Score=34.66 Aligned_cols=50 Identities=8% Similarity=-0.143 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 52 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv 52 (277)
|+..+.+..+++.-.....+.+|+...+||-|..+|.....+|.+++.+.
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavS 267 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMS 267 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 56777777777644333333679999999999999999999998887554
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=80.49 E-value=14 Score=32.12 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 20 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 20 ~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
++.+.+|...+|..|.+++..|+.+|.++++... ++.+...++.+|++-
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKE 194 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCE
Confidence 3445556666699999999999999998554432 345677777888743
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=80.15 E-value=17 Score=31.17 Aligned_cols=51 Identities=10% Similarity=-0.149 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 53 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp 53 (277)
|+.++.++.+.+.-.....+.+|+....||-|..+|-....+|.+++.+..
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 677788888876544444346799999999999999999999988886654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 277 | ||||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-116 | ||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 1e-116 | ||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-107 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 2e-91 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 2e-91 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 1e-74 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 3e-74 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 3e-74 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 4e-74 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 2e-71 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 2e-69 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 5e-69 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 5e-69 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 8e-63 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 3e-60 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 2e-57 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 7e-52 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 8e-52 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 2e-46 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 2e-46 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 2e-45 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 9e-45 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 3e-44 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 1e-43 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 6e-38 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 1e-37 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 1e-29 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 1e-29 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 2e-29 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 5e-29 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 3e-05 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 4e-05 |
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 277 | |||
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 0.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 0.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 0.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 0.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 0.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 0.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 0.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 1e-177 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 1e-172 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 1e-162 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 1e-158 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-151 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-145 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-143 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 5e-17 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 2e-16 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 7e-13 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 9e-13 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 3e-12 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 6e-12 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 8e-12 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 2e-11 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 6e-11 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 9e-11 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 2e-09 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 3e-09 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 5e-09 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 8e-09 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 2e-05 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 3e-04 |
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 543 bits (1402), Expect = 0.0
Identities = 227/276 (82%), Positives = 252/276 (91%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERR
Sbjct: 47 DRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
IIL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+W
Sbjct: 107 IILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW 166
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
KG+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGI
Sbjct: 167 KGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGI 226
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPEN
Sbjct: 227 GAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPEN 286
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
AGKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 287 AGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 322
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 539 bits (1390), Expect = 0.0
Identities = 145/273 (53%), Positives = 197/273 (72%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R+G+++ AE +G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR
Sbjct: 52 DRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LR FGAE++LT A GMKGAV A++I+A PNA + QF N IH ETTGPE+W
Sbjct: 112 CLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIW 171
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + +D ++G+GTGGT+TG + LK+ + ++ +EPTESPVLSGGKPGPHKIQGI
Sbjct: 172 EQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGI 231
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
G GFVP VL+ ++IDEV+ V+ D+AIETA L +G+F G S G AA++IA+RPE
Sbjct: 232 GPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEM 291
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMT 274
GK IV + PSFGERYLS+ L+ SVR E S+
Sbjct: 292 EGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLP 324
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 541 bits (1397), Expect = 0.0
Identities = 205/275 (74%), Positives = 244/275 (88%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIGYSM++DAE KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR
Sbjct: 155 DRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERR 214
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
++L+AFGAELVLTDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W
Sbjct: 215 VLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW 274
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ G++D V+GIGTGGTITG G+F+KEKNP ++ G+EPTES +LSGGKPGPHKIQGI
Sbjct: 275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGF+P L+ I+DEV+ +SS+EAIETAK LALKEGL VGISSG AAAAAI++AKRPEN
Sbjct: 335 GAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPEN 394
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276
AGKLI V+FPSFGERYLS+ LF+S+R+E E M E
Sbjct: 395 AGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 522 bits (1347), Expect = 0.0
Identities = 148/266 (55%), Positives = 200/266 (75%), Gaps = 1/266 (0%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RIG +M+ AE GLI P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR
Sbjct: 48 DRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERR 106
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
++LRA+GAEL+LT A GM GA+ KAEE+ ++ QQFENPANP IH TT E+W
Sbjct: 107 MLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVW 166
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ + G++D +V+G+GTGGTITG + +KE+ P+ + +EP SPVLSGG+ GPH IQGI
Sbjct: 167 RDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGI 226
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP VL+ +++DE++ V +++A+ A+ LA +EGL VGISSG A AA+++A+RPEN
Sbjct: 227 GAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPEN 286
Query: 242 AGKLIVVIFPSFGERYLSSVLFESVR 267
AGKLIVV+ P FGERYLS+ LF V
Sbjct: 287 AGKLIVVVLPDFGERYLSTPLFADVA 312
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 505 bits (1304), Expect = 0.0
Identities = 115/273 (42%), Positives = 177/273 (64%), Gaps = 4/273 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R+G++++ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER+
Sbjct: 59 DRVGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQ 117
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+I++AFGAEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+
Sbjct: 118 MIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEI 176
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
W+ + G +D +VS +GT GT+ G + LKEK IK+ +EP ES VL G GPH IQG
Sbjct: 177 WEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQG 236
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGF+P + + +DE++ + + +A + A+ + +G+ G+SSG A A ++ A++PE
Sbjct: 237 IGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPE 296
Query: 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESM 273
N GK IV+I PS GERYLS+ L++ ++ E +
Sbjct: 297 NEGKTIVIIVPSCGERYLSTDLYK-IKDEGTKI 328
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 504 bits (1301), Expect = 0.0
Identities = 151/274 (55%), Positives = 196/274 (71%), Gaps = 9/274 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+
Sbjct: 43 CRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERK 101
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPEL 120
+L G LVLT+ AKGMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+
Sbjct: 102 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI 161
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLK-EKNPNIKLYGIEPTESPVLSGG------KP 173
WK + G++D +V+G+GTGG+ITG + +K + I +EP ESPV+S KP
Sbjct: 162 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP 221
Query: 174 GPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
GPHKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA
Sbjct: 222 GPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAAD 281
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267
+AK PE A KLIVVI PS ERYLS+ LFE +
Sbjct: 282 RLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 502 bits (1294), Expect = 0.0
Identities = 138/264 (52%), Positives = 188/264 (71%), Gaps = 3/264 (1%)
Query: 2 CRIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER 60
R + MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER
Sbjct: 41 DRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100
Query: 61 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 120
+ +L+AFGAELVLTDP + M A ++A L + A+M QF+NPAN + HYETTGPEL
Sbjct: 101 KRVLKAFGAELVLTDPERRMLAAREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPEL 159
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
++ GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG
Sbjct: 160 YEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQG 219
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
+G GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A R
Sbjct: 220 MGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVA-REL 278
Query: 241 NAGKLIVVIFPSFGERYLSSVLFE 264
GK + I P G +YLS+ L+
Sbjct: 279 GPGKRVACISPDGGWKYLSTPLYA 302
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-177
Identities = 149/263 (56%), Positives = 195/263 (74%), Gaps = 3/263 (1%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
RI +MI AE G + PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR
Sbjct: 46 DRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERR 104
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+LRA+GAELVLT A+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+
Sbjct: 105 NLLRAYGAELVLTPGAQGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIV 163
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ G ++DA V+G+GTGGTITGAGK L+E PNIK+Y +EP +SPVLSGGKPGPHKIQGI
Sbjct: 164 EQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGI 223
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP +L+ +I D V+ V+++EA A+ A +EG+ GISSG A AA+++AK
Sbjct: 224 GAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LG 282
Query: 242 AGKLIVVIFPSFGERYLSSVLFE 264
GK ++ I PS GERYLS+ L++
Sbjct: 283 KGKKVLAIIPSNGERYLSTPLYQ 305
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-172
Identities = 133/261 (50%), Positives = 179/261 (68%), Gaps = 6/261 (2%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR
Sbjct: 48 DRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERR 104
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+
Sbjct: 105 KVLKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEIL 163
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLSGGKPGPHKIQG 180
K +IDA V+G+GTGGTI+G G+ LK +K+ +EP +SPVLSGG+PG H IQG
Sbjct: 164 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQG 223
Query: 181 IGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240
IGAGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 224 IGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG 283
Query: 241 NAGKLIVVIFPSFGERYLSSV 261
+ +V + P ERYLS +
Sbjct: 284 PDAR-VVTVAPDHAERYLSIL 303
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 453 bits (1168), Expect = e-162
Identities = 100/274 (36%), Positives = 146/274 (53%), Gaps = 11/274 (4%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R MI AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR
Sbjct: 54 DRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERR 112
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L +GA+++ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL
Sbjct: 113 QLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELL 172
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
I V+G+GT GT+ G G+FL+E N+K+ EP G + ++ +
Sbjct: 173 ADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNM 224
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GFVP + + I+ V + +A+ + L EG+F GIS+G AA+ +
Sbjct: 225 DEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGALA 284
Query: 242 AGK--LIVVIFPSFGERYLSSVLFESVRKEAESM 273
AG+ I ++ G +YLS+ + +AE+
Sbjct: 285 AGERADIALVVADAGWKYLSTGAYAGSLDDAETA 318
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 441 bits (1137), Expect = e-158
Identities = 113/263 (42%), Positives = 163/263 (61%), Gaps = 11/263 (4%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R SMI +AE +G I PG VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 42 DRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERR 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+RA+GAEL+L +GM+GA A E+ + +L QF NP NP HY TTGPE+W
Sbjct: 101 AAMRAYGAELILVTKEQGMEGARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIW 159
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ +GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT----- 214
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +A N
Sbjct: 215 --EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAA--AN 270
Query: 242 AGKLIVVIFPSFGERYLSSVLFE 264
++V I G+RYLS+ +F
Sbjct: 271 PDAVVVAIICDRGDRYLSTGVFG 293
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-151
Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 15/264 (5%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +IS + + G S++ + TS N G+ L+ +A YR + +P + ++
Sbjct: 129 RPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKL 185
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 186 LPRLLGAQVIVDPEAPSTVHLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFV 244
Query: 123 ---GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
G + + +GT G ++ A +L+ +P+I+ ++P + + G I+
Sbjct: 245 QSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IR 297
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
+ G + + ++I + +V+ +EA+E +A +GL +G S G A A + A
Sbjct: 298 RVETGMLW-INMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEG 356
Query: 240 ENAGKLIVVIFPSFGERYLSSVLF 263
+ VV+ P G +YLS V
Sbjct: 357 DLEPGDYVVVVPDTGFKYLSLVQN 380
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 415 bits (1069), Expect = e-145
Identities = 97/270 (35%), Positives = 152/270 (56%), Gaps = 10/270 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIGY M+ DAE +GL+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+
Sbjct: 95 RIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVS 153
Query: 63 ILRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
LR GA+++ T +G + A+++ +TPN+ +L Q+ N NP HY+ T E
Sbjct: 154 ALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAE 213
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPG 174
+ ++D +V GT GTI+G G+ +KE+ P+ ++ G++P S + L+
Sbjct: 214 ILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQ 273
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F P V + ++D ++ + ++ L +EGL G SSGGA AA+E
Sbjct: 274 FYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALE 333
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
A++ G+ VVI P Y++ + +
Sbjct: 334 HARK-LKKGQRCVVILPDGIRNYMTKFVSD 362
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-143
Identities = 105/270 (38%), Positives = 158/270 (58%), Gaps = 10/270 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAE G + PG +IEPTSGNTGIGLA AA + YR II MP MS E+
Sbjct: 143 RISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVD 201
Query: 63 ILRAFGAELVLTD---PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E
Sbjct: 202 VLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADE 261
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV-----LSGGKPG 174
+ + G++D LV+ +GTGGTITG + LKEK P ++ G++P S + L+ +
Sbjct: 262 ILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 321
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 322 TYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK 381
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFE 264
A+ + G+ VVI P Y++ L +
Sbjct: 382 AAQELQ-EGQRCVVILPDSVRNYMTKFLSD 410
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 5e-17
Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 29/235 (12%)
Query: 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGA 83
T GN G G+A+ A +I MP + ER + GAE ++TD
Sbjct: 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDD--T 171
Query: 84 VQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSGGRIDALVSG 134
V+ + A+ ++Q KI Y T E + G ++
Sbjct: 172 VRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQ 230
Query: 135 IGTGGTITGAGKFLKE--KNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIG 182
G G G +L + N+ +EP ++ G G+
Sbjct: 231 AGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Query: 183 AGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
G P L I+ + + A ++L G I SG + A +
Sbjct: 291 CG-EPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESGAVGL 344
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 32/262 (12%)
Query: 6 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
YS + E K + + ++GN G+ + M+A +++ + M A ++ LR
Sbjct: 146 YSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLR 203
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL----- 120
+ G +V + + AV++ + PN + EN + Y G L
Sbjct: 204 SHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDDENSRTLFLGYSVAGQRLKAQFA 260
Query: 121 ---WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPV----LSGGK 172
+ G GG G LK ++ + EPT SP + G
Sbjct: 261 QQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGL 320
Query: 173 PGPHKIQGIGAGFV----------PGVLEVNII----DEVVQVSSDEAIETAKLLALKEG 218
+Q IG + + D +S + LA +EG
Sbjct: 321 HDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEG 380
Query: 219 LFVGISSGGAAAAAIEIAKRPE 240
+ + S+ A +
Sbjct: 381 IRLEPSALAGMAGPQRVCASVS 402
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 28/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79
G+ ++ ++GNT A AA + +P +++ + GA+++ D
Sbjct: 84 GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GN 141
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
++ A ++ A P ++ N NP +T E+ G D +G
Sbjct: 142 FDDCLELARKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGN 197
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 186
G IT K E K P ++ G + + L G+P H I G
Sbjct: 198 AGNITAYWKGYTEYHQLGLIDKLP--RMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSP 255
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
V + + S +E + L+A EG+FV +S + A ++
Sbjct: 256 ASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKAIDDGWV 315
Query: 241 NAGKLIVVI 249
G +V
Sbjct: 316 ARGSTVVCT 324
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-13
Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79
G + ++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 76 GAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---G 132
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
+ + L + ++ N NP +T E+ G +G
Sbjct: 133 NFDDALRLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKP--GPHKI-QGIGAGFV 186
G IT K + P ++ G + + L G+P P + I G
Sbjct: 189 AGNITAHWMGYKAYHALGKAKRLP--RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNP 246
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
V +E + V+ +E + + LA +EG+F +S A A ++ +
Sbjct: 247 ASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKLLREGRL 306
Query: 241 NAGKLIVVI 249
+V+
Sbjct: 307 EPESTVVLT 315
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 47/249 (18%), Positives = 86/249 (34%), Gaps = 29/249 (11%)
Query: 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79
G+ +I ++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 78 GKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---G 134
Query: 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGT 137
+ + ++ N NP +T E+ G D +G
Sbjct: 135 TFDDALNIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGN 190
Query: 138 GGTITGAGKFLKE--------KNPNIKLYGIEPTESPVLSGGKPGPHK---IQGIGAGFV 186
G IT K K K P ++ G + + + G P + I G
Sbjct: 191 AGNITAYWKGFKIYYEEGKITKLP--RMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNP 248
Query: 187 P-GVLEVNIIDE----VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE- 240
+ E + VS E + KL+A EG+F +S + A I++ +
Sbjct: 249 YSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGFF 308
Query: 241 NAGKLIVVI 249
G+++
Sbjct: 309 KGGEVVTCT 317
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 6e-12
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 30 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 89
SGN G L + A + I +P + +++ ++A+GA +V +P+ + A+
Sbjct: 84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--DESRENVAKR 141
Query: 90 ILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITG 143
+ +T M+ + P T E+ +DALV +G GG + G
Sbjct: 142 VTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVPVGGGGMLAG 192
Query: 144 AGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFVPGVLEVN 193
+K P++K+Y EP+ + GK P+ G+ + G+
Sbjct: 193 IAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS--IGLNTWP 250
Query: 194 II----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA-GKLIVV 248
II D++ V+ DE +L+ + L + ++G AA + + + K I +
Sbjct: 251 IIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICI 310
Query: 249 I 249
+
Sbjct: 311 V 311
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 8e-12
Identities = 47/300 (15%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query: 8 MISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRA 66
++S + + ++G+T L+ A+ I+ +PA +S+ + + A
Sbjct: 170 LVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA 229
Query: 67 FGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGS 124
GA ++ D K + Y+ N N +T E+ +
Sbjct: 230 NGAFVLSID---TDFDGCMKLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQF 282
Query: 125 GGRI-DALVSGIGTGGTITGAGKFLK--------EKNPNIKLYGIEPTE-SPVLSGGKPG 174
++ D ++ G G I K K ++ P ++ + +P+ K G
Sbjct: 283 DWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSG 340
Query: 175 PHKIQ----------GIGAGF-VPGVLEVNIIDE----VVQVSSDEAIETAKLLALKEGL 219
+ I G V V + + V + + +E + A A G+
Sbjct: 341 WKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEAT-EEELMDAMAQADSTGM 399
Query: 220 FVGISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAE 271
F+ +G A A ++ + VV+ F Y S+ + + + +
Sbjct: 400 FICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSN 459
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 52/268 (19%)
Query: 7 SMISDAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65
S +++A+ G++T +SGN +A A I MP + +
Sbjct: 66 SQLNEAQRKAGVLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATK 117
Query: 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------T 115
+G ++++ D + A+EI + I Y+ T
Sbjct: 118 GYGGQVIMYDRY--KDDREKMAKEISEREGLTI------------IPPYDHPHVLAGQGT 163
Query: 116 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGG 171
EL++ G +DAL +G GG ++G+ + PN ++YG+EP G
Sbjct: 164 AAKELFE-EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKG 222
Query: 172 KPGPHKIQ-----GIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFV- 221
G G +II D+++ VS +E I+ K A + + V
Sbjct: 223 SIVHIDTPKTIADGAQTQ-HLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVE 281
Query: 222 GISSGGAAAAAIEIAKRPENAGKLIVVI 249
+G + AA A + + K I +I
Sbjct: 282 P--TGCLSFAAA-RAMKEKLKNKRIGII 306
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 6e-11
Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 49/265 (18%)
Query: 7 SMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA 66
+ + ++GN G+ A+ A I +P + L+
Sbjct: 86 KRWAKQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKN 137
Query: 67 FGAELVLT----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETT 116
GA + D A + A+ + P + F++P A +
Sbjct: 138 EGATCKVVGELLDEAF------ELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SI 184
Query: 117 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPV----LSGG 171
EL + + A+ +G GG + G + L+E ++ + +E + + G
Sbjct: 185 VKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAG 244
Query: 172 K----PGPHKI-QGIGAGFVPGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVG 222
K P + + +G G + + +S EA+ + E + V
Sbjct: 245 KLVSLPKITSVAKALGVK-TVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVE 303
Query: 223 ISSGGAAAAAIE--IAKRPENAGKL 245
+ GAA AA+ + ++ + G L
Sbjct: 304 -PACGAALAAVYSHVIQKLQLEGNL 327
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 9e-11
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 44/247 (17%)
Query: 30 SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEE 89
SGN G+A+ A + ++ MP S ++ RA+GAE+V K + A
Sbjct: 73 SGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVARA 130
Query: 90 ILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELW---KGSGGRIDALVSGIG 136
+ +T A IH ++ T G EL G A+++ +G
Sbjct: 131 LQEETGYAL------------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVG 178
Query: 137 TGGTITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQ------GIGAGFV 186
GG + G +K +P + G+EP + L G+ + G+
Sbjct: 179 GGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTL-S 237
Query: 187 PGVLEVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
G I+ D ++ VS + +E +LL + V GA A +
Sbjct: 238 LGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVV--EPTGALPLAAVLEHGARLP 295
Query: 243 GKLIVVI 249
L +++
Sbjct: 296 QTLALLL 302
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 52/239 (21%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 36 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 91
G+AF +A + +I MP + + + +R FG E++L D AK KA E L
Sbjct: 93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAK------AKAIE-L 145
Query: 92 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 145
++ + F++P T EL + +D + +G GG G
Sbjct: 146 SQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLDRVFVPVGGGGLAAGVA 197
Query: 146 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFV-------PGVLEVNI 194
+K+ P IK+ +E +S L G P + +G F G +
Sbjct: 198 VLIKQLMPQIKVIAVEAEDSACLKAALDAGH--PVDLPRVGL-FAEGVAVKRIGDETFRL 254
Query: 195 I----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
D+++ V SD K L S A A + G+ + I
Sbjct: 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHI 313
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 5e-09
Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 31 GNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQK 86
GN GI A+ A I +P S SL+ L+ GAE+ LT D A +
Sbjct: 63 GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN------LR 116
Query: 87 AEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGSGGRIDALV-SGIGTGG 139
A+E LAK + F++P A + EL ALV + G G
Sbjct: 117 AQE-LAKRDGWENVPPFDHPLIWKGHA-------SLVQELKAVLRTPPGALVLAVGGGGL 168
Query: 140 TITGAGKFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKI-----QGIGAGFVPGVL 190
L+ ++ + +E + ++ GK + +GA
Sbjct: 169 LAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAK-TVAAR 227
Query: 191 EVNII----DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI--------EIAKR 238
+ + V EA+ + L E + V + GAA AAI +
Sbjct: 228 ALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVE-PACGAALAAIYSGLLRRLQAEGC 286
Query: 239 PENAGKLIVVI 249
+ +VVI
Sbjct: 287 LPPSLTSVVVI 297
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 8e-09
Identities = 53/239 (22%), Positives = 83/239 (34%), Gaps = 43/239 (17%)
Query: 36 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKGMKGAVQKAEEIL 91
G+A I MP + + +RA G ++VL D A+ A E L
Sbjct: 122 GVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQ------THALE-L 174
Query: 92 AKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSGIGTGGTITGAG 145
++ + F++P T G E+ + I A+ +G GG I G
Sbjct: 175 SEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIHAVFIPVGGGGLIAGVA 226
Query: 146 KFLKEKNPNIKLYGIEPTESPV----LSGGKPGPHKIQGIGAGFVPGV---------LEV 192
F K+ PN K+ G+EP + L G F GV
Sbjct: 227 TFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDT---FADGVAVALVGEYTFAK 283
Query: 193 --NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
+ID +V V++D K + + + S A A A + + + IV I
Sbjct: 284 CQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIKNENIVAI 342
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 23/181 (12%)
Query: 87 AEEILAKTPNAYML-QQFENPANPKIHY---ETTGPELWKGSGGRIDALVSGIGTGGTIT 142
E + A Y + + + + G + D +V TG T
Sbjct: 145 LESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204
Query: 143 GAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI--------GAGFVPGVLEVNI 194
G ++ G+ + +I I G +V +
Sbjct: 205 GMVVGFAADGRADRVIGV-----DASAKPAQTREQITRIARQTAEKVGLERDIMRADVVL 259
Query: 195 IDEVVQ----VSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVV 248
+ + ++ +E +L A EG+ + G + IE+ + E G ++
Sbjct: 260 DERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLY 319
Query: 249 I 249
Sbjct: 320 A 320
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 30/269 (11%)
Query: 3 RIGYSMISDAEAKG---LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59
R +++DA +G LIT G N A +AA + + +
Sbjct: 67 RKLEFLVADALREGADTLITAGAI------QSNHVRQTAAVAAKLGLHCVALLENPIGTT 120
Query: 60 --------RRIILRAFGAELVLTDPAKGM-KGAVQKAEEILAKTPNAYMLQQFENPANPK 110
R++L F ++ + D A I A+ Y++ + A
Sbjct: 121 AENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGA 180
Query: 111 IHYETTGPELWK--GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
+ Y + E+ + + ++V G+ GT G L+ P+++L G+ + S
Sbjct: 181 MGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSV-- 238
Query: 169 SGGKPGPHKIQGIGAGFVPGV--LEVNIIDEVVQ----VSSDEAIETAKLLALKEGLFVG 222
+ KP +Q AG + ++++ D+ V +D +E KLLA EG+ +
Sbjct: 239 AEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLD 298
Query: 223 -ISSGGAAAAAIE-IAKRPENAGKLIVVI 249
+ +G A A I+ I+++ N I+ I
Sbjct: 299 PVYTGKAMAGLIDGISQKRFNDDGPILFI 327
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 277 | |||
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 100.0 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 100.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.14 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.57 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.51 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.43 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.38 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.36 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.2 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 92.99 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.84 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 92.63 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.62 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.35 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.32 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.22 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.15 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.04 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.63 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.37 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 91.35 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.19 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.14 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.94 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.61 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.51 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.12 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.04 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.03 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.03 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 90.02 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.01 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 89.99 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 89.96 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 89.94 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.67 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.64 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.64 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 89.58 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.56 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.41 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.37 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.2 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 89.18 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 88.83 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.82 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 88.55 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.47 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.37 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.56 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 87.03 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 86.91 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 86.81 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.27 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.19 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 86.09 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.07 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 85.55 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.44 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 85.42 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 85.28 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 85.23 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 85.21 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 84.99 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 84.88 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 84.75 | |
| 1t57_A | 206 | Conserved protein MTH1675; structural genomics, FM | 84.63 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 83.68 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 83.14 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 82.88 | |
| 3k4h_A | 292 | Putative transcriptional regulator; structural gen | 82.01 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 80.76 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.55 | |
| 1jx6_A | 342 | LUXP protein; protein-ligand complex, signaling pr | 80.54 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 80.51 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 80.4 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 80.29 | |
| 3egc_A | 291 | Putative ribose operon repressor; structural genom | 80.06 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 80.02 |
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-61 Score=434.43 Aligned_cols=276 Identities=74% Similarity=1.194 Sum_probs=255.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++||.++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+++++..++
T Consensus 154 KdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~ 233 (430)
T 4aec_A 154 KDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGM 233 (430)
T ss_dssp THHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCCh
Confidence 89999999999999999999988899999999999999999999999999999999999999999999999999864568
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.++++|++||+||.+++.||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|+++||||
T Consensus 234 ~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigV 313 (430)
T 4aec_A 234 TGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (430)
T ss_dssp HHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999999887789999999999998899999999999999778999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++.++.++||+.+..|+.+..+++|+++.|+|+|++++++.|+++||+++||++|+++++++++++++.
T Consensus 314 ep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~la~~~~ 393 (430)
T 4aec_A 314 EPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPE 393 (430)
T ss_dssp EEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHTTSGG
T ss_pred EeCCCcHhhCCCccceeehhccCCCCcHHHHHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHHHHhcC
Confidence 99999988877888888899998877888888999999999999999999999999999999999999999999887654
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFE 276 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~ 276 (277)
.++++||+|+||+|.||+|+.+|+++.+..+.++++
T Consensus 394 ~~g~~VV~Il~d~G~rylst~~~~~~~~~~~~~~~~ 429 (430)
T 4aec_A 394 NAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429 (430)
T ss_dssp GTTCEEEEEECBBGGGGTTSHHHHHHHHHC------
T ss_pred CCcCeEEEEECCCCccccchhhhhhhhhhhhcCccc
Confidence 578999999999999999999999999999888875
|
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=423.69 Aligned_cols=274 Identities=61% Similarity=1.066 Sum_probs=252.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|+++|.++||.++||++|+||||+|+|++|+++|++|+||||+++++.|+.+++.|||+|+.+++..++
T Consensus 66 K~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~ 145 (344)
T 3vc3_A 66 ADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGM 145 (344)
T ss_dssp THHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcc
Confidence 89999999999999999999988999999999999999999999999999999999999999999999999999865455
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
......+.++..+.++.++++||+||.+++.||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+|+++||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigV 225 (344)
T 3vc3_A 146 GGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGV 225 (344)
T ss_dssp HHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHHHHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEE
Confidence 56666666667777789999999999988889999999999999888999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||.+++.+..+++.++.+++++.+..+...+...+|+++.|+|+|++++++.|+++||++++|+||+++++++++++...
T Consensus 226 ep~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~a~~~~ 305 (344)
T 3vc3_A 226 EPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPE 305 (344)
T ss_dssp EEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSGG
T ss_pred cCCCChhhcCCCCCCeeEecccccccCcccchhhceEEEEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHHhcccc
Confidence 99999999888888888888888777777778889999999999999999999999999999999999999999887655
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMT 274 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~ 274 (277)
.++++||+|+||+|+||+|+.+|++|+.+.+++.
T Consensus 306 ~~g~~VV~il~d~G~rYlst~~~~~~~~e~~~~~ 339 (344)
T 3vc3_A 306 NKGKLIVTVHPSFGERYLSSVLFQELRQEAENMQ 339 (344)
T ss_dssp GTTCEEEEEECBBGGGGTTSTTTHHHHHHHHTCC
T ss_pred CCCCEEEEEECCCchhhccchhhHHHHHHhccCC
Confidence 6889999999999999999999999998877653
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-60 Score=420.07 Aligned_cols=275 Identities=53% Similarity=0.896 Sum_probs=250.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++||.+.||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|++++...++
T Consensus 51 K~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 130 (334)
T 3tbh_A 51 KDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGM 130 (334)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCc
Confidence 79999999999999999999854369999999999999999999999999999999999999999999999999864458
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+.+++++.++++|++||+||.|+..||.|+++||++|+++.||+||+|+|+|||++|++.++++.+|.+|||||
T Consensus 131 ~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigV 210 (334)
T 3tbh_A 131 KGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAV 210 (334)
T ss_dssp HHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEE
Confidence 88999999999887789999999999988889999999999999778999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++..+++..+.+++++.+..|+.+..+++|+++.|+|+|++++++.|++++|+++||+||+++++++++++++.
T Consensus 211 e~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~~~~~~ 290 (334)
T 3tbh_A 211 EPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPE 290 (334)
T ss_dssp EETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHSGG
T ss_pred eeCCchHhhCCCcCCeecCCCCCCcCCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHHHHhcc
Confidence 99999988877777777889988877888888999999999999999999999999999999999999999999887643
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhcccc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTF 275 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~ 275 (277)
.++++||+|+|++|+||+|+.+|++++.+.++++.
T Consensus 291 ~~g~~Vv~v~t~~g~ky~~~~~~~~~~~~~~~~~~ 325 (334)
T 3tbh_A 291 MEGKTIVTVIPSFGERYLSTTLYRSVRDEVSSLPV 325 (334)
T ss_dssp GTTCEEEEEECBBGGGGTTSGGGTHHHHC------
T ss_pred CCcCeEEEEECCCCccccCchhhhhhHHHhhhcch
Confidence 47899999999999999999999999888777653
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=408.87 Aligned_cols=275 Identities=82% Similarity=1.261 Sum_probs=252.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.++||.++||++|+||||+|+|++|+++|++|+||||.++++.|+++++.|||+|+.+++..+|
T Consensus 46 K~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 125 (322)
T 1z7w_A 46 KDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGM 125 (322)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCH
Confidence 79999999999999999999877899999999999999999999999999999999999999999999999999864457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.++++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+|.+||++|
T Consensus 126 ~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigv 205 (322)
T 1z7w_A 126 KGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV 205 (322)
T ss_dssp HHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEE
Confidence 88999999999888789999999999997789999999999999767999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..+++.+..+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||+++++++++.++..
T Consensus 206 e~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~~~~~~ 285 (322)
T 1z7w_A 206 EPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPE 285 (322)
T ss_dssp EEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGG
T ss_pred ecCCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHHHhcC
Confidence 99999888766666667888887777778888899999999999999999999999999999999999999999877643
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhcccc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTF 275 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~ 275 (277)
.++++||+|+|++|.||+++.+|+.|....+.+..
T Consensus 286 ~~~~~vv~i~tg~g~k~~~~~~~~~~~~~~~~~~~ 320 (322)
T 1z7w_A 286 NAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTF 320 (322)
T ss_dssp GTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCC
T ss_pred CCCCeEEEEECCCCcccccchhhhHHHHhcccccc
Confidence 46789999999999999999999999988777643
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-57 Score=399.54 Aligned_cols=266 Identities=56% Similarity=0.970 Sum_probs=234.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++|| ++||++|+||||+|+|++|+++|++|+||||.++++.|+++++.+||+|+.++...+|
T Consensus 47 K~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~ 125 (313)
T 2q3b_A 47 KDRIGVAMLQAAEQAGLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGM 125 (313)
T ss_dssp HHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCH
Confidence 799999999999999999887 5799999999999999999999999999999999999999999999999999964457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+..+++++|+||.++..||.|+++||++|++++||+||+|+|+||+++|++.++++.+|.+|||+|
T Consensus 126 ~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~v 205 (313)
T 2q3b_A 126 SGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAV 205 (313)
T ss_dssp HHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHHHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEE
Confidence 88999999999887555889999999996677999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+...+...+.+++++.+..|+.+....+|+++.|+|+|++++++.|++++|+++||+||+++++++++.+++.
T Consensus 206 e~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~~ 285 (313)
T 2q3b_A 206 EPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPE 285 (313)
T ss_dssp EETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTCGG
T ss_pred eeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHHHHhcC
Confidence 99999877655556667788887767777878889999999999999999999999999999999999999999877643
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
.++++||+++|++|.||+++.+|++|.
T Consensus 286 ~~~~~vv~v~~~~g~ky~~~~~~~~~~ 312 (313)
T 2q3b_A 286 NAGKLIVVVLPDFGERYLSTPLFADVA 312 (313)
T ss_dssp GTTCEEEEEECBBSGGGC---------
T ss_pred CCCCEEEEEECCCCcccccchhhhhhh
Confidence 467899999999999999999999885
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=399.06 Aligned_cols=266 Identities=56% Similarity=0.917 Sum_probs=236.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++|+ ++||++||||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..+|
T Consensus 42 K~R~a~~~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 120 (316)
T 1y7l_A 42 KCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGM 120 (316)
T ss_dssp HHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCH
Confidence 799999999999999998887 6799999999999999999999999999999999999999999999999999864348
Q ss_pred HHHHHHHHHHHHhCCCe-EecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEE
Q 023801 81 KGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLY 158 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vi 158 (277)
+++.+.+++++++.++. ++++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++++.+ |.+|||
T Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi 200 (316)
T 1y7l_A 121 KGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSV 200 (316)
T ss_dssp HHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEE
T ss_pred HHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEE
Confidence 88999999999887666 8899999999877789999999999996569999999999999999999999998 999999
Q ss_pred EEecCCCCccCC---CC---CCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 159 GIEPTESPVLSG---GK---PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 159 gV~~~~~~~~~~---~~---~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
+|||++++.+.. ++ ..++.+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||++++++
T Consensus 201 ~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~ 280 (316)
T 1y7l_A 201 AVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAA 280 (316)
T ss_dssp EEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHH
T ss_pred EEecCCCccccccccCCccCCCCcccCcCCCCCCCchhhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHH
Confidence 999999976532 11 234567888877677778888899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
++++++...++++||+|+|++|.||+|+.+|++|.
T Consensus 281 ~~~~~~~~~~~~~vv~i~tg~g~k~~~~~~~~~~~ 315 (316)
T 1y7l_A 281 DRLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315 (316)
T ss_dssp HHHHTSGGGTTCEEEEEECBBCSSCCCTTTC----
T ss_pred HHHHHhcCCCCCeEEEEECCCCcccCCcccccccc
Confidence 99877653368899999999999999999998774
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-56 Score=391.50 Aligned_cols=259 Identities=43% Similarity=0.758 Sum_probs=233.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++|| ++||++||||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++...+|
T Consensus 41 K~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~ 119 (303)
T 2v03_A 41 KDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGM 119 (303)
T ss_dssp HHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCH
Confidence 799999999999999999887 6799999999999999999999999999999999999999999999999999975568
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+++ |++||+||.++..||.|+++||++|++..||+||+|+|+||+++|++.++++.+|.+|||+|
T Consensus 120 ~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigv 198 (303)
T 2v03_A 120 EGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 198 (303)
T ss_dssp HHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEE
Confidence 89999999998885577 99999999986679999999999999656999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++.. +++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 199 e~~~~~~~~~-------~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~- 270 (303)
T 2v03_A 199 QPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAAAN- 270 (303)
T ss_dssp EECTTCCCTT-------CCCCCGGGCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHS-
T ss_pred cCCCCccccc-------CCcCCCCCCCcccchHHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHC-
Confidence 9999987643 55666655677777888999999999999999999999999999999999999999988764
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhh
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEA 270 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 270 (277)
++++||+|+|++|.||+|+.+|++|+...
T Consensus 271 -~~~~vv~i~tg~~~ky~~~~~~~~~~~~~ 299 (303)
T 2v03_A 271 -PDAVVVAIICDRGDRYLSTGVFGEEHFSQ 299 (303)
T ss_dssp -TTCEEEEEECBBSGGGGGGTTTCC-----
T ss_pred -CCCeEEEEECCCCcccccchhcHHHHHhc
Confidence 78899999999999999999999887653
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=397.14 Aligned_cols=257 Identities=38% Similarity=0.626 Sum_probs=233.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.++|+ ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++...++
T Consensus 53 K~R~a~~~l~~a~~~g~l~~~-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 131 (325)
T 3dwg_A 53 KDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGS 131 (325)
T ss_dssp THHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCH
Confidence 899999999999999999988 5799999999999999999999999999999999999999999999999999975578
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.++++|++||+||.++..||.|+++||++|++ .||+||+|+|+|||++|++.++++.+|.++||+|
T Consensus 132 ~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g~~t~~~Ei~~q~~-~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigV 210 (325)
T 3dwg_A 132 NTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADLP-EITHFVAGLGTTGTLMGTGRFLREHVANVKIVAA 210 (325)
T ss_dssp HHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 999999999999886689999999999966899999999999995 4999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+. .+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||++|++++++++++++..
T Consensus 211 e~~~~~~~~-------~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~~~~~~ 283 (325)
T 3dwg_A 211 EPRYGEGVY-------ALRNMDEGFVPELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGVGAGAL 283 (325)
T ss_dssp EEECCGGGG-------CCSSGGGCCCCTTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCcchh-------ccCcccCCcCcccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHHHHHhc
Confidence 999997662 3456666667778888899999999999999999999999999999999999999999876542
Q ss_pred CCCCe--EEEEecCCCCCCcchhccHHH
Q 023801 241 NAGKL--IVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 241 ~~~~~--vv~i~~~gG~~~~~~~~~~~~ 266 (277)
.++++ ||+|+|++|.||+|+.+|++.
T Consensus 284 ~~g~~~~Vv~i~~g~g~ky~~~~~~~~~ 311 (325)
T 3dwg_A 284 AAGERADIALVVADAGWKYLSTGAYAGS 311 (325)
T ss_dssp HHTCCEEEEEEECBBGGGGGGGTTTSSC
T ss_pred cCCCCCeEEEEECCCCccccCchhhcCC
Confidence 24566 999999999999999666543
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=398.51 Aligned_cols=266 Identities=42% Similarity=0.771 Sum_probs=242.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.++|.++|| ++||++||||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..++
T Consensus 58 KdR~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 136 (343)
T 2pqm_A 58 KDRVGFNIVYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGM 136 (343)
T ss_dssp HHHHHHHHHHHHHHHTSSCTT-CEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCH
Confidence 799999999999999999887 5799999999999999999999999999999999999999999999999999864457
Q ss_pred HHHHHHHHHHHHhCCCe-EecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
+++.+.+++++++.+.. ++++||+||.++..||.|++ ||++|+++.||+||+|+|+||+++|++.++++.+|.+|||+
T Consensus 137 ~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vig 215 (343)
T 2pqm_A 137 PGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIA 215 (343)
T ss_dssp HHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHHHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHHHHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEE
Confidence 88999999999887655 77899999998778999999 99999966799999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||++++.+..++..++.+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||+++++++++++++
T Consensus 216 Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~ 295 (343)
T 2pqm_A 216 VEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKP 295 (343)
T ss_dssp EEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHTSG
T ss_pred EecCCCcccccCCCCCeecCccCCCCCCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHHHHhc
Confidence 99999988776666667788988777788888889999999999999999999999999999999999999999987764
Q ss_pred CCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 240 ENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
..++++||+|+|++|.||+|+.+|++|..
T Consensus 296 ~~~~~~vv~i~tg~g~ky~~~~~~~~~~~ 324 (343)
T 2pqm_A 296 ENEGKTIVIIVPSCGERYLSTDLYKIKDE 324 (343)
T ss_dssp GGTTCEEEEEECBBGGGGTTSSTTTSCCC
T ss_pred CCCCCeEEEEEcCCCccccchhhhhhHhh
Confidence 23688999999999999999999987754
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=387.13 Aligned_cols=261 Identities=52% Similarity=0.867 Sum_probs=236.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCc--EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGES--VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~--~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~ 78 (277)
|||++.+++.+++++|.++|| + +||++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..
T Consensus 40 K~R~a~~~l~~a~~~g~~~~g-~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~ 118 (304)
T 1ve1_A 40 KDRPAWYMIKDAEERGILRPG-SGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPER 118 (304)
T ss_dssp THHHHHHHHHHHHHTTSCCTT-SCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCC
Confidence 899999999999999998887 5 7999999999999999999999999999999999999999999999999999744
Q ss_pred ChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEE
Q 023801 79 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY 158 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vi 158 (277)
+|+++.+.+++++++ ++++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++++..|.+|||
T Consensus 119 ~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi 197 (304)
T 1ve1_A 119 RMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVI 197 (304)
T ss_dssp HHHHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEE
T ss_pred CHHHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEE
Confidence 488899999998887 4788999999999844447999999999996679999999999999999999999999999999
Q ss_pred EEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhc
Q 023801 159 GIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKR 238 (277)
Q Consensus 159 gV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~ 238 (277)
+|||++++.+..+++..+.+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||++++++++++++
T Consensus 198 ~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~ 277 (304)
T 1ve1_A 198 AVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE 277 (304)
T ss_dssp EEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHHHHh
Confidence 99999998877666666677888877778888888999999999999999999999999999999999999999998765
Q ss_pred CCCCCCeEEEEecCCCCCCcchhccH
Q 023801 239 PENAGKLIVVIFPSFGERYLSSVLFE 264 (277)
Q Consensus 239 ~~~~~~~vv~i~~~gG~~~~~~~~~~ 264 (277)
. .++++||+|+|++|.||+|+.+|+
T Consensus 278 ~-~~~~~vv~i~tg~g~ky~~~~~~~ 302 (304)
T 1ve1_A 278 L-GPGKRVACISPDGGWKYLSTPLYA 302 (304)
T ss_dssp H-CTTCEEEEEECBBSGGGTTSTTTC
T ss_pred c-CCCCeEEEEECCCCccCCCcccCC
Confidence 3 267899999999999999985664
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=390.71 Aligned_cols=261 Identities=57% Similarity=0.921 Sum_probs=208.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++|| ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.++...++
T Consensus 45 K~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 123 (308)
T 2egu_A 45 KDRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGM 123 (308)
T ss_dssp HHHHHHHHHHHHHHTTCCCTT-CEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCH
Confidence 799999999999999999887 5799999999999999999999999999999999999999999999999999964457
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++.+ +++++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++++.+|.+|||+|
T Consensus 124 ~~~~~~a~~l~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigv 202 (308)
T 2egu_A 124 RGAIAKAEELVREHG-YFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAV 202 (308)
T ss_dssp HHHHHHHHHHHHHHC-CBCC--------------CHHHHHHHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHHCc-CCcCCcCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEE
Confidence 889999999988874 5888999999986789999999999999667999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++.+..++...+.+++++.+..|+.+....+|+++.|+|+|++++++.|++++|+++||+||+++++++++++++
T Consensus 203 e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~~~~~- 281 (308)
T 2egu_A 203 EPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKVAKEL- 281 (308)
T ss_dssp EECC-----------------------CCCCCCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH-
T ss_pred EeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHHHHhc-
Confidence 9999987765555566678888766677777888999999999999999999999999999999999999999987764
Q ss_pred CCCCeEEEEecCCCCCCcchhccH
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFE 264 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~ 264 (277)
.++++||+|+|++|.||+|+.+|+
T Consensus 282 ~~~~~vv~i~tg~g~ky~~~~~~~ 305 (308)
T 2egu_A 282 GKGKKVLAIIPSNGERYLSTPLYQ 305 (308)
T ss_dssp CTTCEEEEEECBBGGGGTTSSTTC
T ss_pred CCCCeEEEEECCCCcccccchhcc
Confidence 478899999999999999987773
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=392.34 Aligned_cols=270 Identities=39% Similarity=0.618 Sum_probs=236.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|.++|+ ++||++|+||||+|+|++|+++|++|+||||+.++..|+++++.|||+|++++...+|
T Consensus 141 KdR~a~~~i~~a~~~G~l~~g-~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~ 219 (435)
T 1jbq_A 141 KDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219 (435)
T ss_dssp HHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC----
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCc
Confidence 799999999999999999988 5799999999999999999999999999999999999999999999999999864345
Q ss_pred HH---HHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KG---AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
++ ..+.+++++++.++.++++||+|+.|+..||.++++||++|++..+|+||+|+|+|||++|++.++++..|++||
T Consensus 220 d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrV 299 (435)
T 1jbq_A 220 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 299 (435)
T ss_dssp ---CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEE
T ss_pred chHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEE
Confidence 43 467788888887778899999999888899999999999999767999999999999999999999999999999
Q ss_pred EEEecCCCCccC-----CCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 158 YGIEPTESPVLS-----GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 158 igV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
|+|||.+++.+. .+....+.+++++.+.++..+....+|+++.|+|+|++++++.|++++||++||+||++++++
T Consensus 300 igVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa 379 (435)
T 1jbq_A 300 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVA 379 (435)
T ss_dssp EEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHH
T ss_pred EEEecCCchhhchhhhhcCCCcceeecccccCccchhhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHH
Confidence 999999986442 122334557788876666666678899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhc
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAES 272 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~ 272 (277)
++++++. .++++||+|+|++|.||++++++++|..+.+.
T Consensus 380 ~~~~~~~-~~g~~VV~iltd~g~ky~~~~~~~~w~~~~~~ 418 (435)
T 1jbq_A 380 VKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWMLQKGF 418 (435)
T ss_dssp HHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHHHHTTC
T ss_pred HHHHHHc-CCCCeEEEEEcCCcccccchhhccHHHHhcCC
Confidence 9987763 36889999999999999999999999876543
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=381.43 Aligned_cols=255 Identities=53% Similarity=0.809 Sum_probs=233.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++++ ||++|+||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++..+|
T Consensus 47 K~R~a~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 123 (303)
T 1o58_A 47 KDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGM 123 (303)
T ss_dssp THHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC---EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCH
Confidence 899999999999999987765 99999999999999999999999999999999999999999999999999864348
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCC-cEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~-~~vig 159 (277)
+++.+.+++++++. +++|++||+||.++..||.|+++||++|+++.||+||+|+|+||+++|++.++++.+|. +|||+
T Consensus 124 ~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vig 202 (303)
T 1o58_A 124 KGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVA 202 (303)
T ss_dssp HHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEE
T ss_pred HHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEE
Confidence 89999999998887 67889999999987679999999999999666999999999999999999999999899 99999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||++++.+..+++..+.+++++.+..|+.+...++|+++.|+|+|++++++.|++++|+++||+||+++++++++.++.
T Consensus 203 ve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~~~~ 282 (303)
T 1o58_A 203 VEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL 282 (303)
T ss_dssp EEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS
T ss_pred EecCCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHHHHHc
Confidence 99999988876666667788888776777787888999999999999999999999999999999999999999987753
Q ss_pred CCCCCeEEEEecCCCCCCcch
Q 023801 240 ENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~ 260 (277)
.++++||+|+|++|.||+|+
T Consensus 283 -~~~~~vv~i~tg~g~ky~~~ 302 (303)
T 1o58_A 283 -GPDARVVTVAPDHAERYLSI 302 (303)
T ss_dssp -CTTCCEEEEECBBGGGCTTT
T ss_pred -CCCCEEEEEECCCCcccccC
Confidence 36789999999999999986
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-53 Score=396.50 Aligned_cols=269 Identities=36% Similarity=0.596 Sum_probs=242.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.++|| ++||++|+||||+|+|++|+++|++|+||||+.++..|+.+++.|||+|+.++...+|
T Consensus 93 K~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~ 171 (527)
T 3pc3_A 93 KDRIGYRMVQDAEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAY 171 (527)
T ss_dssp THHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCT
T ss_pred HHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCc
Confidence 899999999999999999998 5799999999999999999999999999999999999999999999999999864344
Q ss_pred H---HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 K---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+ .+.+.+.+++++.++.+|++||+||.|+..||.|+++||++|+++.||+||+|+|+||+++|++.++++..|+++|
T Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~v 251 (527)
T 3pc3_A 172 DSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQI 251 (527)
T ss_dssp TSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEE
T ss_pred ccHHHHHHHHHHHHHhCCCcEecCCCCCcchHHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEE
Confidence 4 3677888998888788899999999888899999999999999768999999999999999999999999999999
Q ss_pred EEEecCCCCccC-----CCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 158 YGIEPTESPVLS-----GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 158 igV~~~~~~~~~-----~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
|||||++++.+. ...+..+.++|++.+..|..++..++|+++.|+|+|++++++.|+++|||++||+||++++++
T Consensus 252 igve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~p~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaa 331 (527)
T 3pc3_A 252 VGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAA 331 (527)
T ss_dssp EEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHH
T ss_pred EEEecCCcccccchhhcCCCCCceeccccCCCCCCcccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHH
Confidence 999999997542 123344567899888778888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhh
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAE 271 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~ 271 (277)
++++++. .++++||+|++++|.+|+++.++++|.....
T Consensus 332 l~~~~~~-~~~~~vv~i~~d~g~ryls~~~~~~~l~~rg 369 (527)
T 3pc3_A 332 LEHARKL-KKGQRCVVILPDGIRNYMTKFVSDNWMEARN 369 (527)
T ss_dssp HHHHTTC-CTTCEEEEEECBBGGGGTTTTTSHHHHHHTT
T ss_pred HHHHHHc-CCCCeEEEEEcCcchhhHhhhhcHHHHHhcC
Confidence 9987753 3788999999999999999999998876543
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=366.24 Aligned_cols=253 Identities=21% Similarity=0.307 Sum_probs=214.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.+++++|.+.+. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ ++
T Consensus 56 K~Rga~~~i~~a~~~g~~~~~-~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~ 132 (346)
T 3l6b_A 56 KIRGALNAVRSLVPDALERKP-KAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SD 132 (346)
T ss_dssp HHHHHHHHHHTTC-----CCC-SCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SH
T ss_pred HHHHHHHHHHHHHHhccccCC-CEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 799999999999998765444 569999999999999999999999999999999999999999999999999986 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++|++||.+ +.||.|+++||++|+ +.||+||+|+|+|||++|++.++|+.+|++|||+|
T Consensus 133 ~~~~~~a~~l~~~~-~~~~i~~~~np~~-~~g~~t~~~Ei~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigV 209 (346)
T 3l6b_A 133 ESRENVAKRVTEET-EGIMVHPNQEPAV-IAGQGTIALEVLNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAA 209 (346)
T ss_dssp HHHHHHHHHHHHHH-TCEECCSSSCHHH-HHHHHHHHHHHHHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 88999999998887 6899999999987 899999999999999 68999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC------CCcccCccCCC--CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP------GPHKIQGIGAG--FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~------~~~~~~gl~~~--~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+..+++... ...+.+..+++|+++.|+|+|++++++.|++++|+++||+||++
T Consensus 210 e~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a 289 (346)
T 3l6b_A 210 EPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVG 289 (346)
T ss_dssp EEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred ecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHH
Confidence 999987542 2221 13345565532 12234556789999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
++++++...+.. .++++||+|+ |||++|+++
T Consensus 290 laa~~~~~~~~~~~~~~~Vv~i~-sGG~~d~~~ 321 (346)
T 3l6b_A 290 VAAVLSQHFQTVSPEVKNICIVL-SGGNVDLTS 321 (346)
T ss_dssp HHHHHSGGGGGSCTTCCEEEEEE-CBCCCCTTG
T ss_pred HHHHHHhhhhhccCCCCeEEEEc-CCCCCCHHH
Confidence 999986543332 3678888888 899999997
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=356.04 Aligned_cols=259 Identities=18% Similarity=0.165 Sum_probs=221.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.++|. ++||++|+||||+|+|++|+++|++|+||||++++..|+++++.|||+|+.+++ +|
T Consensus 77 K~Rga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~ 149 (364)
T 4h27_A 77 KIRGIGHFCKRWAKQGC-----AHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LL 149 (364)
T ss_dssp HHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--ST
T ss_pred HHHHHHHHHHHHHhcCC-----CEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 79999999999999876 679999999999999999999999999999999999999999999999999985 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vig 159 (277)
+++.+.+++++++.++++|++||+||.+ +.||.|+++||++|+++.||+||+|+|+||+++|++.++|+.+ |+++||+
T Consensus 150 ~~a~~~a~~l~~~~~~~~~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vig 228 (364)
T 4h27_A 150 DEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIA 228 (364)
T ss_dssp THHHHHHHHHHHHSTTEEEECSSCSHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCeEEeCCCCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEE
Confidence 8999999999998778999999999988 7899999999999996679999999999999999999999886 7899999
Q ss_pred EecCCCCccC----CCCC-----CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 160 IEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 160 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
|||++++++. .+++ ..+.+++|+.+..+ +.+..++.+..+.|+|+|++++++.|++++|+++||+||+
T Consensus 229 Ve~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aa 308 (364)
T 4h27_A 229 METFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGA 308 (364)
T ss_dssp EEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHH
Confidence 9999998653 2222 23445677665432 2334566777889999999999999999999999999999
Q ss_pred HHHHHH-----HHHhcCCCC--CCeEEEEecCCC-CCCcchhccHHHHHhh
Q 023801 228 AAAAAI-----EIAKRPENA--GKLIVVIFPSFG-ERYLSSVLFESVRKEA 270 (277)
Q Consensus 228 alaa~~-----~~~~~~~~~--~~~vv~i~~~gG-~~~~~~~~~~~~~~~~ 270 (277)
++++++ ++.+++..+ +++||+|+ ||| +.+++ .+..|.+..
T Consensus 309 alaa~~~~k~~~l~~~g~~~~~~~~Vv~v~-tGG~~~d~~--~l~~~~~~~ 356 (364)
T 4h27_A 309 ALAAVYSHVIQKLQLEGNLRTPLPSLVVIV-CGGSNISLA--QLRALKEQL 356 (364)
T ss_dssp HHHHHHTTHHHHHHHTTSSCSSCCEEEEEE-CBCSSCCHH--HHHHHHHHT
T ss_pred HHHHHHhhhhHHhhhccCcCCCCCeEEEEE-CCCCCCCHH--HHHHHHHHh
Confidence 999985 566666543 58999999 555 46665 566665554
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=354.30 Aligned_cols=260 Identities=17% Similarity=0.153 Sum_probs=220.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++.++|. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +|
T Consensus 77 KdRga~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 149 (372)
T 1p5j_A 77 KIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LL 149 (372)
T ss_dssp THHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CH
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CH
Confidence 89999999999998764 689999999999999999999999999999999999999999999999999986 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vig 159 (277)
+++.+.+++++++.++++|++||+||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++++.+ |.+|||+
T Consensus 150 ~~a~~~a~~l~~~~~~~~~v~~~~n~~~-~~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vig 228 (372)
T 1p5j_A 150 DEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIA 228 (372)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCcEEeCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEE
Confidence 9999999999988668999999999988 7899999999999996669999999999999999999999986 8899999
Q ss_pred EecCCCCccC----CCCC-----CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 160 IEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 160 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
|||++++++. .+++ ..+.+++|+.+..+ +.+...+.++++.|+|+|++++++.|++++|+++||+||+
T Consensus 229 Ve~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~ 308 (372)
T 1p5j_A 229 METFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGA 308 (372)
T ss_dssp EEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred EecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHHH
Confidence 9999987653 1222 13456677765433 2234556788999999999999999999999999999999
Q ss_pred HHHHHHH-----HHhcCC--CCCCeEEEEecCCCCCCcchhccHHHHHhh
Q 023801 228 AAAAAIE-----IAKRPE--NAGKLIVVIFPSFGERYLSSVLFESVRKEA 270 (277)
Q Consensus 228 alaa~~~-----~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 270 (277)
+++++++ +.+++. .++++||+|+|+|++ +|...|++|....
T Consensus 309 alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~--~~~~~~~~~~~~~ 356 (372)
T 1p5j_A 309 ALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSN--ISLAQLRALKEQL 356 (372)
T ss_dssp HHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSS--CCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCC--CCHHHHHHHHHHh
Confidence 9999874 333442 367899999955543 5555777776654
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-49 Score=347.55 Aligned_cols=258 Identities=22% Similarity=0.172 Sum_probs=217.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.+++++|. ++||++||||||+|+|++|+++|++|+||||+++++.|+++++.+||+|+.+++ +|
T Consensus 38 K~R~a~~~l~~a~~~g~-----~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~ 110 (318)
T 2rkb_A 38 KIRGIGHFCQEMAKKGC-----RHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGK--VW 110 (318)
T ss_dssp THHHHHHHHHHHHHTTC-----CEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SH
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECC--CH
Confidence 89999999999999874 689999999999999999999999999999999999999999999999999985 68
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vig 159 (277)
+++.+.+++++++. +++|++||+||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++++.+ |.+|||+
T Consensus 111 ~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ 188 (318)
T 2rkb_A 111 DEANLRAQELAKRD-GWENVPPFDHPLI-WKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIA 188 (318)
T ss_dssp HHHHHHHHHHHHST-TEEECCSSCSHHH-HHHHHHHHHHHHHHSSSCCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEE
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCCChhh-ccchhHHHHHHHHhcCCCCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEE
Confidence 89999999998875 7899999999988 7899999999999996679999999999999999999999886 8899999
Q ss_pred EecCCCCccC----CCCC-----CCcccCccCCCCCc---cCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 160 IEPTESPVLS----GGKP-----GPHKIQGIGAGFVP---GVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 160 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
|||++++++. .+++ ..+.+++++.+..+ +.+...+.++++.|+|+|++++++.|++++|+++||+||+
T Consensus 189 ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~ 268 (318)
T 2rkb_A 189 METHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGA 268 (318)
T ss_dssp EEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHHCBCCCHHHHH
T ss_pred EecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhcCcEEchhHHH
Confidence 9999987552 2221 13456677765443 2233456788999999999999999999999999999999
Q ss_pred HHHHHHH-----HHhcCC--CCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 228 AAAAAIE-----IAKRPE--NAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 228 alaa~~~-----~~~~~~--~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++ +.+++. .++++||+|+|+|++.+++ .+.++.+.
T Consensus 269 a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~--~l~~~~~~ 315 (318)
T 2rkb_A 269 ALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSR--ELQALKTH 315 (318)
T ss_dssp HHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHH--HHHHHHHH
T ss_pred HHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHH--HHHHHHHH
Confidence 9999873 333442 3678999999555556666 55555544
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=354.08 Aligned_cols=252 Identities=18% Similarity=0.181 Sum_probs=218.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.++|.+++++|. ++||++|+||||+|+|++|+++|++|+||+|++ ++..|+++++.+||+|+.+++ +
T Consensus 61 KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~ 133 (351)
T 3aey_A 61 KDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--N 133 (351)
T ss_dssp THHHHHHHHHHHHHTTC-----SEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--C
T ss_pred HHHHHHHHHHHHHhcCC-----CEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999998886 689999999999999999999999999999998 999999999999999999986 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
++++.+.+++++++. +++|+++ +||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++++.++
T Consensus 134 ~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~ 210 (351)
T 3aey_A 134 FDDALRLTQKLTEAF-PVALVNS-VNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKR 210 (351)
T ss_dssp HHHHHHHHHHHHHHS-SEEECST-TCHHH-HHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHhc-CcEecCC-CCccc-eeeeeeHHHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCC
Confidence 889999999998887 5888887 88888 78999999999999976799999999999999999999998653
Q ss_pred CcEEEEEecCCCCccCCCCCC---CcccCccCCCCCc-cC----ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 154 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-GV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
.+||++|||.+++++..+++. .+.+++++.+... +. +..++.++++.|+|+|++++++.|++++|+++||+|
T Consensus 211 ~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epss 290 (351)
T 3aey_A 211 LPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPAS 290 (351)
T ss_dssp CCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHH
T ss_pred CCeEEEEecCCCChhhcCcccCCccchhHhhcCCCCCCHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECchH
Confidence 689999999998766544332 2456777654321 11 234577899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchhc
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSVL 262 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~~ 262 (277)
|+++++++++.+++. .++++||+|+|++|.||+++.+
T Consensus 291 a~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~~ 328 (351)
T 3aey_A 291 AAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAE 328 (351)
T ss_dssp HHHHHHHHHHHHTTCSCTTCEEEEEECBBGGGCHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCCHHHHH
Confidence 999999999988654 3688999999778889988643
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=353.41 Aligned_cols=251 Identities=20% Similarity=0.180 Sum_probs=218.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.++|.+++++|. ++||++||||||+|+|++|+++|++|+||+|++ +++.|+++++.+||+|+.+++ +
T Consensus 63 KdR~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~ 135 (352)
T 2zsj_A 63 KDRGMTLAISKAVEAGK-----RAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--T 135 (352)
T ss_dssp THHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--C
T ss_pred HHHHHHHHHHHHHhcCC-----CEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999999886 679999999999999999999999999999998 999999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
|+++.+.+++++++. +++|+++ +||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++++..+
T Consensus 136 ~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~ 212 (352)
T 2zsj_A 136 FDDALNIVRKIGENF-PVEIVNS-VNPYR-IEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITK 212 (352)
T ss_dssp HHHHHHHHHHHHHHS-SEEECST-TCTHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHc-CcEECCC-CCcch-hhhHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCC
Confidence 889999999998887 5888887 88888 78999999999999976699999999999999999999998643
Q ss_pred CcEEEEEecCCCCccCCCCCC---CcccCccCCCCCc-cC----ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 154 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-GV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
.+||++|||.+++++..+++. .+.+++++.+... +. +.+++.++++.|+|+|++++++.|++++|+++||+|
T Consensus 213 ~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epss 292 (352)
T 2zsj_A 213 LPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPAS 292 (352)
T ss_dssp CCEEEEEEETTBCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHH
T ss_pred CCEEEEEecCCCcHHhcCCccCCCcchhHHhcCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECchH
Confidence 689999999998766444331 2456777654321 11 234567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
|+++++++++++++. .++++||+|+|++|.||+++.
T Consensus 293 a~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 329 (352)
T 2zsj_A 293 AASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTA 329 (352)
T ss_dssp HHHHHHHHHHHHTTCCCSCCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccChHHH
Confidence 999999999988654 368899999977888999864
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=354.74 Aligned_cols=252 Identities=19% Similarity=0.206 Sum_probs=218.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.++|.+++++|. ++||++|+||||+|+|++|+++|++|+||||++ +++.|+++++.+||+|+.+++ +
T Consensus 69 KdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~ 141 (360)
T 2d1f_A 69 KDRGMTMAVTDALAHGQ-----RAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--N 141 (360)
T ss_dssp THHHHHHHHHHHHHTTC-----SEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--C
T ss_pred HHHHHHHHHHHHHHCCC-----CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--C
Confidence 89999999999998886 689999999999999999999999999999998 999999999999999999996 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC------
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP------ 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~------ 153 (277)
|+++.+.+++++++.++.+++++ +||.+ +.||.|+++||++|++..||+||+|+|+||+++|++.++++..+
T Consensus 142 ~~~~~~~a~~l~~~~~~~~~i~~-~n~~~-~~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~ 219 (360)
T 2d1f_A 142 FDDCLELARKMAADFPTISLVNS-VNPVR-IEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDK 219 (360)
T ss_dssp HHHHHHHHHHHHHHCTTEEECST-TCHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHhcCCeEEcCC-CChhh-hhhHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhcccccc
Confidence 88999999999988755888887 88888 78999999999999976799999999999999999999998643
Q ss_pred CcEEEEEecCCCCccCCCCCC---CcccCccCCCCCc-cC----ccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 154 NIKLYGIEPTESPVLSGGKPG---PHKIQGIGAGFVP-GV----LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~-~~----~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
.+||++|||.+++++..+++. .+.+++++.+... +. +.+++.++++.|+|+|++++++.|++++|+++||+|
T Consensus 220 ~~~vigve~~~~~~~~~g~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~epss 299 (360)
T 2d1f_A 220 LPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPAS 299 (360)
T ss_dssp CCEEEEEEEGGGCHHHHSSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHH
T ss_pred CceEEEEecCCCCHHhcCCccCCccchHHHhCCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECchH
Confidence 689999999998776544331 2445777655321 11 234567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
|+++++++++.+++. .++++||+|+|++|.||++++
T Consensus 300 a~alaa~~~~~~~~~~~~~~~vv~i~tg~~~k~~~~~ 336 (360)
T 2d1f_A 300 AASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTA 336 (360)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEEEEEECBBGGGCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeCCCCcCCHHHH
Confidence 999999999887654 368899999977888998864
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-49 Score=359.50 Aligned_cols=263 Identities=19% Similarity=0.221 Sum_probs=221.9
Q ss_pred CChhHHHHHHH-----HHHcCCCCCCC----------------cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH
Q 023801 1 MCRIGYSMISD-----AEAKGLITPGE----------------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE 59 (277)
Q Consensus 1 ~dR~a~~~v~~-----a~~~g~l~~g~----------------~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~ 59 (277)
|||+|.++|.. ++++|.++||. .+||++|+||||+|+|++|+++|++|+||||++++..
T Consensus 118 K~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~ 197 (442)
T 3ss7_X 118 KARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAW 197 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHH
T ss_pred HHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHH
Confidence 79999999986 88999999886 4899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC--------CCCEE
Q 023801 60 RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDAL 131 (277)
Q Consensus 60 ~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~--------~~d~i 131 (277)
|+.+++.|||+|+.+++ +|+++.+.+++++++.+++++++++ |+.+++.||.|+++||++|+.+ .||+|
T Consensus 198 k~~~~r~~GA~Vv~v~~--~~~~a~~~a~~~a~~~~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~V 274 (442)
T 3ss7_X 198 KKAKLRSHGVTVVEYEQ--DYGVAVEEGRKAAQSDPNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFV 274 (442)
T ss_dssp HHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHTCTTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEE
T ss_pred HHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEE
Confidence 99999999999999996 7899999999999887678899885 5555589999999999999842 36699
Q ss_pred EEecCCchhHHHHHHHHhhc-CCCcEEEEEecCCCCccC----CCCC-----------CCcccCccCCCCC---ccCccc
Q 023801 132 VSGIGTGGTITGAGKFLKEK-NPNIKLYGIEPTESPVLS----GGKP-----------GPHKIQGIGAGFV---PGVLEV 192 (277)
Q Consensus 132 v~pvG~Gg~~aGi~~~~~~~-~~~~~vigV~~~~~~~~~----~~~~-----------~~~~~~gl~~~~~---~~~~~~ 192 (277)
|+|+|+||+++|++.++++. +++++||+|||.+++++. .+.+ ..+.++||+.+.. .+.+..
T Consensus 275 vvpvG~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~ 354 (442)
T 3ss7_X 275 YLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAME 354 (442)
T ss_dssp EEECSSSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHG
T ss_pred EEEeCCchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHH
Confidence 99999999999999999987 799999999999998642 1221 2345567765432 233456
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC------C-CC----CCeEEEEecCCCCCCcchh
Q 023801 193 NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP------E-NA----GKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 193 ~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~------~-~~----~~~vv~i~~~gG~~~~~~~ 261 (277)
+++|+++.|+|+|++++++.|+++|||++||+||+++++++++++.. . .+ +++||+++|+||.++.+
T Consensus 355 ~~~d~~~~Vsd~e~~~a~~~L~~~eGi~~epssaaalAa~~~l~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~~~-- 432 (442)
T 3ss7_X 355 RLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEE-- 432 (442)
T ss_dssp GGCCEEEEECHHHHHHHHHHHHHHHCCCCCGGGGGGGGHHHHHHHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCCHH--
T ss_pred hhCCeEEEECHHHHHHHHHHHHHHCCCeEcHHHHHHHHHHHHHHhchhhHHhcCCCcccCCCCeEEEEECCCCCCCHH--
Confidence 88999999999999999999999999999999999999999987631 1 11 68999999777776654
Q ss_pred ccHHHHH
Q 023801 262 LFESVRK 268 (277)
Q Consensus 262 ~~~~~~~ 268 (277)
.+..|+.
T Consensus 433 ~~~~~~~ 439 (442)
T 3ss7_X 433 EMNQYLA 439 (442)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455543
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=348.72 Aligned_cols=252 Identities=20% Similarity=0.271 Sum_probs=214.0
Q ss_pred CChhHHHHHHHHHHc-CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~-g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.+++.++.++ +. ++||++|+||||+|+|++|+++|++|++|||+++++.|+++++.|||+|+++++ +
T Consensus 57 KdRga~~~i~~~~~~~~~-----~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~ 129 (323)
T 1v71_A 57 KFRGALNALSQLNEAQRK-----AGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--Y 129 (323)
T ss_dssp HHHHHHHHHTTCCHHHHH-----HCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--T
T ss_pred HHHHHHHHHHHHHHhcCC-----CeEEEeCCCcHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECC--C
Confidence 799999999876542 22 569999999999999999999999999999999999999999999999999986 4
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
++++.+.+++++++. +++|++||+||.+ +.||.|+++||++|++ .||+||+|+|+|||++|++.++|+.+|++|||+
T Consensus 130 ~~~~~~~a~~l~~~~-~~~~i~~~~n~~~-~~g~~t~~~Ei~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vig 206 (323)
T 1v71_A 130 KDDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYG 206 (323)
T ss_dssp TTCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHHHHHHHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHHhc-CCEecCCCCCcch-hhhHhHHHHHHHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEE
Confidence 567788888888776 6788999999988 7899999999999994 799999999999999999999999999999999
Q ss_pred EecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 160 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 160 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
|||.+++++. .+++ ..+.++|++.+.. ++.+.++++|+++.|+|+|++++++.|++++|+++||++|+
T Consensus 207 ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~ 286 (323)
T 1v71_A 207 VEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCL 286 (323)
T ss_dssp EEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGH
T ss_pred EEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHH
Confidence 9999987542 1222 2345677765432 23455678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 228 AAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 228 alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
++++++++.++ .++++||+|+ +||+.+++ .|.+++
T Consensus 287 alaa~~~~~~~--~~~~~vv~i~-tGg~~~~~--~~~~~~ 321 (323)
T 1v71_A 287 SFAAARAMKEK--LKNKRIGIII-SGGNVDIE--RYAHFL 321 (323)
T ss_dssp HHHHHHHTGGG--GTTCEEEEEE-CBCCCCHH--HHHHHH
T ss_pred HHHHHHHhHHh--cCCCeEEEEe-CCCCCCHH--HHHHHH
Confidence 99999987664 3788999999 77885554 444443
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-49 Score=362.29 Aligned_cols=249 Identities=22% Similarity=0.277 Sum_probs=216.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++. + ++||++|+||||+++|++|+++|++|+||||.+++..|+++++.+||+|+.+++ +|
T Consensus 62 KdRgA~n~i~~l~~~~~-~---~gVV~aSsGNhg~avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~ 135 (514)
T 1tdj_A 62 KLRGAYAMMAGLTEEQK-A---HGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NF 135 (514)
T ss_dssp THHHHHHHHHTTTTSSC-S---SSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SH
T ss_pred HHHHHHHHHHHHHHhcC-C---CEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CH
Confidence 89999999999875432 2 459999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ ++||+|+++||++|++. +|+||+|+|+||+++|++.++|+.+|.+|||||
T Consensus 136 dda~~~a~ela~e~-g~~~v~pfdnp~~-iaGqgTig~EI~eQl~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgV 212 (514)
T 1tdj_A 136 DEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQQDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAV 212 (514)
T ss_dssp HHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHHHHhc-CCEeeCCCCCHHH-HHHHHHHHHHHHHHCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999998886 7899999999998 79999999999999954 999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+.++|++...+ ++.+..+++|+++.|+|+|+.++++.|++++|+++||+||++
T Consensus 213 ep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~a 292 (514)
T 1tdj_A 213 EAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALA 292 (514)
T ss_dssp EETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred eccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHH
Confidence 999988764 2322 1234566665332 345678899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
++++++++++...++++||+|+ |||+.+++
T Consensus 293 lAal~~~~~~~~~~g~~VV~I~-tGgn~d~~ 322 (514)
T 1tdj_A 293 LAGMKKYIALHNIRGERLAHIL-SGANVNFH 322 (514)
T ss_dssp HHHHHHHHHHHTCCSCEEEEEC-CCCCCCTT
T ss_pred HHHHHHHHHhcCCCCCeEEEEE-eCCCCCHH
Confidence 9999998765445788999999 67775555
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=353.95 Aligned_cols=258 Identities=24% Similarity=0.286 Sum_probs=222.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++.+++. .++||++||||||+|+|++|+++|++|++|||++++..|+++++.+||+|+.+++ +|
T Consensus 91 KdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~ 164 (366)
T 3iau_A 91 KLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TF 164 (366)
T ss_dssp THHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHHHHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SH
T ss_pred HHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHHHHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CH
Confidence 89999999998754332 1469999999999999999999999999999999999999999999999999984 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ +.||.|++.||++|+ +.||+||+|+|+||+++|++.++|..+|+++|++|
T Consensus 165 ~~~~~~a~~~~~~~-~~~~i~~~~n~~~-i~g~~t~~~Ei~~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigV 241 (366)
T 3iau_A 165 DEAQTHALELSEKD-GLKYIPPFDDPGV-IKGQGTIGTEINRQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGV 241 (366)
T ss_dssp HHHHHHHHHHHHHH-TCEECCSSSSHHH-HHHHHHHHHHHHHHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEE
T ss_pred HHHHHHHHHHHHhc-CCEecCCCCChHH-HHHHHHHHHHHHHhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999998886 7899999999988 799999999999999 78999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
+|.+++++. .+++ ..+..++++.+.. ++.+..+++++++.|+|+|++++++.|++++|+++||+||++
T Consensus 242 e~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~sa~a 321 (366)
T 3iau_A 242 EPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVA 321 (366)
T ss_dssp EEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred eecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHHHHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcHHHHHH
Confidence 999997653 1222 2234566664432 344567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhh
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEA 270 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~ 270 (277)
+++++++++++..++++||+|+ |||+.+++ .+.++.+.+
T Consensus 322 laa~~~~~~~~~~~g~~Vv~i~-tGgn~d~~--~l~~~~~~~ 360 (366)
T 3iau_A 322 IAGAAAYCEFYKIKNENIVAIA-SGANMDFS--KLHKVTELA 360 (366)
T ss_dssp HHHHHHHHHHTTCCSCEEEEEE-CBCCCCGG--GHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEEe-CCCCCCHH--HHHHHHHhh
Confidence 9999999887766789999999 88885555 666665543
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=347.10 Aligned_cols=244 Identities=23% Similarity=0.298 Sum_probs=209.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.+++.++. +. ++||++|+||||+|+|++|+++|++|+||||+++++.|+++++.|||+|+.+++ +|
T Consensus 51 KdR~a~~~i~~l~--~~-----~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~ 121 (311)
T 1ve5_A 51 KARGALSKALALE--NP-----KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TA 121 (311)
T ss_dssp HHHHHHHHHHHSS--SC-----CCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CT
T ss_pred HHHHHHHHHHHhc--CC-----CeEEEECCCcHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CH
Confidence 7999999999876 22 469999999999999999999999999999999999999999999999999986 47
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
+++.+.+++++++. +++|++||+||.+ +.||.|+++||++|+. +.||+||+|+|+||+++|++.++|+.+|.+||
T Consensus 122 ~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~v 199 (311)
T 1ve5_A 122 KNREEVARALQEET-GYALIHPFDDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLV 199 (311)
T ss_dssp TTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHhc-CcEecCCCCCcch-hhhccHHHHHHHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEE
Confidence 78888888888876 7899999999988 7899999999999995 57999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC------CCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecc
Q 023801 158 YGIEPTESPVLS----GGKP------GPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 224 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~------~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~ 224 (277)
|+|||++++++. .+++ ..+.++++..+. .++.+..+++++++.|+|+|++++++.|++++|+++||+
T Consensus 200 igve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps 279 (311)
T 1ve5_A 200 LGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPT 279 (311)
T ss_dssp EEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGG
T ss_pred EEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCccHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchH
Confidence 999999987542 2222 234456666432 233355678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 225 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 225 sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
||+++++++++.++ . +++||+|+ +||+.+++
T Consensus 280 sa~alaa~~~~~~~--~-~~~vv~i~-tgg~~d~~ 310 (311)
T 1ve5_A 280 GALPLAAVLEHGAR--L-PQTLALLL-SGGNRDFS 310 (311)
T ss_dssp GGHHHHHHHHHGGG--S-CSEEEEEE-CBCCCCCC
T ss_pred HHHHHHHHHhhhhc--c-CCEEEEEE-CCCCCCCC
Confidence 99999999998776 3 78999999 77875544
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=345.90 Aligned_cols=249 Identities=20% Similarity=0.198 Sum_probs=209.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEee--CCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~a--SsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||.+.+++.+++++|. ++||++ |+||||+|+|++|+++|++|++|||+++ ++.|+.+++.|||+|+++++.
T Consensus 54 K~R~~~~~i~~a~~~G~-----~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~ 128 (325)
T 1j0a_A 54 KIRKLEYLLGDALSKGA-----DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAK 128 (325)
T ss_dssp HHHHHHHHHHHHHHTTC-----SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCC
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcc
Confidence 79999999999999987 579997 9999999999999999999999999999 999999999999999999974
Q ss_pred CCh---HHHHHHHHHHHHhCCCeE-ecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC
Q 023801 78 KGM---KGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP 153 (277)
Q Consensus 78 ~~~---~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~ 153 (277)
.+. .++.+.+++++++.+..| +..++.||.+ ..||.|++.||++|++..||+||+|+|||||++|+++++++.+|
T Consensus 129 ~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~-~~g~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~ 207 (325)
T 1j0a_A 129 DSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG-TLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNE 207 (325)
T ss_dssp STTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH-HTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred hhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHH-HHHHHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCC
Confidence 332 256778888887764433 4456678877 67899999999999966899999999999999999999999999
Q ss_pred CcEEEEEecCCCCccCCCCC---CCcccCccC-CCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cHHHH
Q 023801 154 NIKLYGIEPTESPVLSGGKP---GPHKIQGIG-AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGA 228 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~---~~~~~~gl~-~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~a 228 (277)
++|||+|||.+++.+..... .+....+++ .+..++.+..+++|+ +.|+|+|++++++.|++++||++|| |||++
T Consensus 208 ~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a 286 (325)
T 1j0a_A 208 DIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKA 286 (325)
T ss_dssp CCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHH
T ss_pred CceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHH
Confidence 99999999999976542110 011122343 234577788889999 9999999999999999999999999 59999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
+++++++++++.. +++||+|+ |||+..+
T Consensus 287 ~aa~~~~~~~~~~-~~~Vv~i~-tGG~~~~ 314 (325)
T 1j0a_A 287 FYGLVDLARKGEL-GEKILFIH-TGGISGT 314 (325)
T ss_dssp HHHHHHHHHTTCS-CSEEEEEE-CCCHHHH
T ss_pred HHHHHHHHHcCCC-CCcEEEEE-CCCchhh
Confidence 9999999887654 88999998 8888443
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-48 Score=351.59 Aligned_cols=262 Identities=19% Similarity=0.200 Sum_probs=216.5
Q ss_pred CChhHHHHHHHHHH--cCC----C--------CCCCc-EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHH
Q 023801 1 MCRIGYSMISDAEA--KGL----I--------TPGES-VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 65 (277)
Q Consensus 1 ~dR~a~~~v~~a~~--~g~----l--------~~g~~-~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~ 65 (277)
|||++.++|.++++ .|. + .+ .+ +||++|+||||+|+|++|+++|++|+||||+++++.|+++++
T Consensus 77 K~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~-~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~ 155 (398)
T 4d9i_A 77 XMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIG-EKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAIL 155 (398)
T ss_dssp THHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCS-CCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhcccccccchhhhhhhcc-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH
Confidence 89999999999953 331 1 12 25 799999999999999999999999999999999999999999
Q ss_pred HcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC-----CC-CCcchhhhhhchHHHHHhhhCCC---CCEEEEecC
Q 023801 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ-----FE-NPANPKIHYETTGPELWKGSGGR---IDALVSGIG 136 (277)
Q Consensus 66 ~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~~~g~~t~~~Ei~~Q~~~~---~d~iv~pvG 136 (277)
.|||+|+.+++ +|+++.+.+++++++. +++|++| |+ ||.+.+.||.|+++||++|++.. ||+||+|+|
T Consensus 156 ~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG 232 (398)
T 4d9i_A 156 NLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAG 232 (398)
T ss_dssp TTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECS
T ss_pred HcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecC
Confidence 99999999996 7899999999998887 7899986 65 35556899999999999999544 999999999
Q ss_pred CchhHHHHHHHHhhc--CCCcEEEEEecCCCCccC----CCCCC------CcccCccCCCCC---ccCccccccCeEEEe
Q 023801 137 TGGTITGAGKFLKEK--NPNIKLYGIEPTESPVLS----GGKPG------PHKIQGIGAGFV---PGVLEVNIIDEVVQV 201 (277)
Q Consensus 137 ~Gg~~aGi~~~~~~~--~~~~~vigV~~~~~~~~~----~~~~~------~~~~~gl~~~~~---~~~~~~~~~~~~~~v 201 (277)
+||+++|++.++++. .+.++||+|||++++++. .+++. .+..++++.+.. .+.+..+++|+++.|
T Consensus 233 ~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V 312 (398)
T 4d9i_A 233 VGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISC 312 (398)
T ss_dssp SSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCCCC------CCTTCCCSSCCHHHHHHHHHHCCEEEEE
T ss_pred ccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEE
Confidence 999999999999876 478999999999998764 23322 234456654321 233446789999999
Q ss_pred CHHHHHHHHHHHHHHcC----CeeeccHHHHHHHHHHHH---------hcCC-CCCCeEEEEecCCCCCCcchhccHHHH
Q 023801 202 SSDEAIETAKLLALKEG----LFVGISSGGAAAAAIEIA---------KRPE-NAGKLIVVIFPSFGERYLSSVLFESVR 267 (277)
Q Consensus 202 ~d~e~~~a~~~l~~~~g----i~~~p~sg~alaa~~~~~---------~~~~-~~~~~vv~i~~~gG~~~~~~~~~~~~~ 267 (277)
+|+|++++++.|+++|| |++||+||++++++++++ +++. .++++||+|+ |||+++++ .|.+++
T Consensus 313 ~d~e~~~a~~~l~~~eG~~~~i~~epssa~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~-tGG~~d~~--~~~~~~ 389 (398)
T 4d9i_A 313 QDSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVIS-TEGDTDVK--HYREVV 389 (398)
T ss_dssp CTHHHHHHHHHHHSCSTTCCCCCCCHHHHHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEE-CBCCSSHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCcEEECchHHHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEe-CCCCCCHH--HHHHHH
Confidence 99999999999999999 999999999999999884 3443 4688999999 78998776 566665
Q ss_pred Hh
Q 023801 268 KE 269 (277)
Q Consensus 268 ~~ 269 (277)
..
T Consensus 390 ~~ 391 (398)
T 4d9i_A 390 WE 391 (398)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=350.79 Aligned_cols=252 Identities=15% Similarity=0.107 Sum_probs=212.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe--eCCchHHHHHHHHHHHCCCeEEEEeCCCCC-----H------HHHHHHHHc
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE--PTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L------ERRIILRAF 67 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~--aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-----~------~~~~~~~~~ 67 (277)
|||++.++|.+++++|. ++||+ +|+||||+|+|++|+++|++|++|||+.++ + .|+.+++.|
T Consensus 51 K~R~a~~~l~~a~~~g~-----~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~ 125 (341)
T 1f2d_A 51 KLRKLEYIVPDIVEGDY-----THLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125 (341)
T ss_dssp HHHHHTTTHHHHHHSCC-----SEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhC
Confidence 79999999999999887 67999 999999999999999999999999999887 3 499999999
Q ss_pred CCEEEEeCCCCCh---HHHHHHHHHHHHhCCC-eEecCC-CCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCch
Q 023801 68 GAELVLTDPAKGM---KGAVQKAEEILAKTPN-AYMLQQ-FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGG 139 (277)
Q Consensus 68 Ga~v~~~~~~~~~---~~~~~~a~~~~~~~~~-~~~~~~-~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg 139 (277)
||+|+++++..+. +.+.+.+++++++.+. +++.++ |+||.+ +.||.|++.||++|++ ..||+||+|+||||
T Consensus 126 GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~~~~~~np~~-~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGg 204 (341)
T 1f2d_A 126 GADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGS 204 (341)
T ss_dssp TCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSH
T ss_pred CCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEeCCCcCCCCcc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCchH
Confidence 9999999864322 2567778888887653 445678 999999 6799999999999995 47999999999999
Q ss_pred hHHHHHHHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCCCC--CccCccccccCeEEEeCHHHHHHHHHHHH
Q 023801 140 TITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF--VPGVLEVNIIDEVVQVSSDEAIETAKLLA 214 (277)
Q Consensus 140 ~~aGi~~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~--~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 214 (277)
|++|++.++++.+|++|||+|||.+++.+...+. ..+.+++++.+. .++.+..+++|+++.|+|+|++++++.|+
T Consensus 205 t~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 284 (341)
T 1f2d_A 205 TTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCA 284 (341)
T ss_dssp HHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHH
Confidence 9999999999999999999999999976532111 112234555332 34467788899999999999999999999
Q ss_pred HHcCCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCcc
Q 023801 215 LKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 215 ~~~gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 259 (277)
+++||++|| |||+++++++++++++.. ++++||+|+ |||+..+.
T Consensus 285 ~~egi~~ep~~sa~alaa~~~~~~~~~~~~~~~Vv~i~-tGG~~~~~ 330 (341)
T 1f2d_A 285 EQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVH-LGGAPALS 330 (341)
T ss_dssp HHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGG
T ss_pred HHcCCccccchHHHHHHHHHHHHHhCCCCCCCeEEEEE-CCchHHhh
Confidence 999999999 699999999999887653 788999998 89985544
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=345.02 Aligned_cols=253 Identities=23% Similarity=0.312 Sum_probs=213.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE-EeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV-LTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~-~~~~~~~ 79 (277)
|||++.+++..+. +.+++| ++|+++|+||||+|+|++|+++|++|+||||+.++..|+.+|+.+||+|+ .++. .+
T Consensus 127 K~R~a~~~i~~l~--~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~ 202 (389)
T 1wkv_A 127 KDRPAVEIISRLS--RRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PS 202 (389)
T ss_dssp THHHHHHHHHHHT--TTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC-SS
T ss_pred HHHHHHHHHHHHH--HHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEEcCC-CC
Confidence 8999999999965 555666 67999999999999999999999999999999999999999999999999 7773 36
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhhcCCCcE
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIK 156 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~ 156 (277)
++++.+.+.+++++. +++|++||+||.+++.||++++.||++|+. ..||+||+|+|+||+++|++.+|++..|.+|
T Consensus 203 ~~da~~~a~~~~~~~-g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vr 281 (389)
T 1wkv_A 203 TVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIR 281 (389)
T ss_dssp SGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHHHcc-CcEecCcCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCe
Confidence 788888888887775 789999999998888999999999999994 3699999999999999999999999899999
Q ss_pred EEEEecCCCCccCCCCCCCcccCccCCCCCccCccccccC-eEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHH
Q 023801 157 LYGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIID-EVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEI 235 (277)
Q Consensus 157 vigV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~-~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~ 235 (277)
||+|||.+++.+.+ .. .+.. .+..+....+| +++.|+|+|++++++.|+++|||+++|+||+++++++++
T Consensus 282 vigVe~~~~~~l~G----i~---~i~~--~~~~~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l 352 (389)
T 1wkv_A 282 AVLVQPAQGDSIPG----IR---RVET--GMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKK 352 (389)
T ss_dssp EEEEEECTTCCCTT----CC---CGGG--CCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcccc----cc---ccCC--cchhhhhheeccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHH
Confidence 99999998865532 11 1111 12222334566 899999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 236 AKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 236 ~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
++++..+++++|+++|++|+||++++ .++...
T Consensus 353 ~~~g~~~~~~vVviltg~G~k~~~~~--~~~~~~ 384 (389)
T 1wkv_A 353 AAEGDLEPGDYVVVVPDTGFKYLSLV--QNALEG 384 (389)
T ss_dssp HHTTCSCSEEEEEEECBBGGGCHHHH--HHHHC-
T ss_pred HHhcCCCCCCEEEEEcCCCccCHHHH--HHHHHh
Confidence 88765445668889989999999963 344443
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=345.44 Aligned_cols=251 Identities=19% Similarity=0.177 Sum_probs=209.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeC--CchHHHHHHHHHHHCCCeEEEEeCCCCCH--------HHHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aS--sGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--------~~~~~~~~~Ga~ 70 (277)
|||.+.+++.+++++|. ++||++| +||||+|+|++|+++|++|+||||++++. .|+.+++.|||+
T Consensus 65 K~R~~~~~l~~a~~~G~-----~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~ 139 (342)
T 4d9b_A 65 KLRKLEFLVADALREGA-----DTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQ 139 (342)
T ss_dssp HHHHHHHHHHHHHHTTC-----CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCE
T ss_pred HHHhHHHHHHHHHHcCC-----CEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCE
Confidence 79999999999999987 6799996 79999999999999999999999998873 599999999999
Q ss_pred EEEeCCCCChHHHH-HHHHHHHHhCCCeEecCCC--CCCcchhhhhhchHHHHHhhhC--CCCCEEEEecCCchhHHHHH
Q 023801 71 LVLTDPAKGMKGAV-QKAEEILAKTPNAYMLQQF--ENPANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 71 v~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~~~~g~~t~~~Ei~~Q~~--~~~d~iv~pvG~Gg~~aGi~ 145 (277)
|+++++..+++++. +.++++.++.+ ..|+.++ .||.+ ..||.|+++||++|++ ..||+||+|+|+|||++|++
T Consensus 140 V~~~~~~~~~~~~~~~~a~~l~~~~~-~~~~~p~~~~n~~~-~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~ 217 (342)
T 4d9b_A 140 IEMCDALTDPDAQLQTLATRIEAQGF-RPYVIPVGGSSALG-AMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLA 217 (342)
T ss_dssp EEECSCCSSHHHHHHHHHHHHHHTTC-CEEECCGGGCSHHH-HHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHH
T ss_pred EEEECchhhHHHHHHHHHHHHHhcCC-ceEEeCCCCCChHH-HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHH
Confidence 99998754555555 45667766653 3444444 45555 6799999999999996 47999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCccCCCCC---CCcccCccCC-CCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCee
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGA-GFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFV 221 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~-~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ 221 (277)
.++++.+|++|||+|||.+++.+..... ..+.+++|+. +..++.+..+++|+++.|+|+|++++++.|++++||++
T Consensus 218 ~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ 297 (342)
T 4d9b_A 218 VGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLL 297 (342)
T ss_dssp HHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHHTTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHHcCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999975532111 1233456765 45677788899999999999999999999999999999
Q ss_pred ecc-HHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCcc
Q 023801 222 GIS-SGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 222 ~p~-sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~ 259 (277)
||+ ||+++++++++++++.. ++++||+|+ |||+..+.
T Consensus 298 epsYsa~a~aa~~~~~~~~~~~~~~~Vv~i~-tGGn~~~~ 336 (342)
T 4d9b_A 298 DPVYTGKAMAGLIDGISQKRFNDDGPILFIH-TGGAPALF 336 (342)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSSSSSCEEEEE-CCCTTHHH
T ss_pred cccHHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCCccchh
Confidence 996 99999999999887653 788999999 99995443
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=339.15 Aligned_cols=252 Identities=17% Similarity=0.199 Sum_probs=205.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe--eCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH--------HHHHHHHcCCE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE--PTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--------RRIILRAFGAE 70 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~--aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~--------~~~~~~~~Ga~ 70 (277)
|||++.++|.+++++|. ++||+ +|+||||+|+|++|+++|++|++|||++++.. |+++++.|||+
T Consensus 51 K~R~a~~~l~~a~~~g~-----~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~ 125 (338)
T 1tzj_A 51 KTRKLEYLIPEALAQGC-----DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125 (338)
T ss_dssp HHHHHHTTHHHHHHTTC-----CEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCE
Confidence 79999999999999886 57898 89999999999999999999999999988764 99999999999
Q ss_pred EEEeCCCCChH---HHHHHHHHHHHhCCCeEec-CC-CCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHH
Q 023801 71 LVLTDPAKGMK---GAVQKAEEILAKTPNAYML-QQ-FENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTIT 142 (277)
Q Consensus 71 v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~a 142 (277)
|+.+++..+.. .+.+.+++++++.+..+++ ++ |+||.+ +.||.|+++||++|+. ..||+||+|+|+|||++
T Consensus 126 V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~ 204 (338)
T 1tzj_A 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLG-GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQA 204 (338)
T ss_dssp EEECCC-------CHHHHHHHHHHHTTCCEEECCGGGTSSTTT-TTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHH
T ss_pred EEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeCCCcCCCccc-HHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHH
Confidence 99998632211 2466777887776444543 45 899998 7899999999999994 47999999999999999
Q ss_pred HHHHHHhhc-CCCcEEEEEecCCCCccCCCCC---CCcccCccCCCC----CccCccccccCeEEEeCHHHHHHHHHHHH
Q 023801 143 GAGKFLKEK-NPNIKLYGIEPTESPVLSGGKP---GPHKIQGIGAGF----VPGVLEVNIIDEVVQVSSDEAIETAKLLA 214 (277)
Q Consensus 143 Gi~~~~~~~-~~~~~vigV~~~~~~~~~~~~~---~~~~~~gl~~~~----~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 214 (277)
|+++++++. .|. |||+|||.+++.+..... ..+..++++.+. ..+.+..+++++++.|+|+|++++++.|+
T Consensus 205 Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~ 283 (338)
T 1tzj_A 205 GMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCA 283 (338)
T ss_dssp HHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHHHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHH
Confidence 999999998 788 999999999865432111 112223333221 23345677889999999999999999999
Q ss_pred HHcCCeeec-cHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCcch
Q 023801 215 LKEGLFVGI-SSGGAAAAAIEIAKRPEN-AGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 215 ~~~gi~~~p-~sg~alaa~~~~~~~~~~-~~~~vv~i~~~gG~~~~~~ 260 (277)
+++||++|| |||+++++++++++++.. ++++||+|+ |||++|++.
T Consensus 284 ~~~gi~~ep~ysa~alaa~~~~~~~~~~~~~~~Vv~i~-tGG~~~~~~ 330 (338)
T 1tzj_A 284 RTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGVPALNG 330 (338)
T ss_dssp HHHSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGGG
T ss_pred HhcCCccccchHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCCcccccc
Confidence 999999999 599999999999887653 788999998 899988874
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=327.92 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=203.5
Q ss_pred CChhHHHHHHHHHH---cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEA---KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~---~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||++.+++..+.+ +|+ +.++||++||||||+|+|++|+++|++|+||+|++ ++..|+.+++.+||+|+.+++
T Consensus 163 KDRga~~~~~~l~~~~~~~~---g~~~Vv~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g 239 (486)
T 1e5x_A 163 KDLGMTVLVSQVNRLRKMKR---PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT 239 (486)
T ss_dssp THHHHHHHHHHHHHHHHTTC---CCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCC---CCeEEEEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECC
Confidence 89999888877654 432 23679999999999999999999999999999996 999999999999999999996
Q ss_pred CCChHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhcC---
Q 023801 77 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN--- 152 (277)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~~--- 152 (277)
+|+++.+.+++++++. ++++++++ ||.+ +.||.|+++||++|+++ .||+||+|+|+||+++|++.+|++..
T Consensus 240 --~~dd~~~~a~~l~~~~-~~~~vns~-N~~~-i~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~G 314 (486)
T 1e5x_A 240 --DFDGCMKLIREITAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELG 314 (486)
T ss_dssp --CHHHHHHHHHHHHHHS-CEEEGGGS-HHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHhcC-CEEEeCCC-CHHH-HHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhc
Confidence 6899999999998887 68888887 7887 78999999999999964 59999999999999999999998764
Q ss_pred ---CCcEEEEEecCCCCccC----CCC----C---CCcccCccCCCCCccCc--cccccCe----EEEeCHHHHHHHHHH
Q 023801 153 ---PNIKLYGIEPTESPVLS----GGK----P---GPHKIQGIGAGFVPGVL--EVNIIDE----VVQVSSDEAIETAKL 212 (277)
Q Consensus 153 ---~~~~vigV~~~~~~~~~----~~~----~---~~~~~~gl~~~~~~~~~--~~~~~~~----~~~v~d~e~~~a~~~ 212 (277)
|.+||++||+++++++. .++ + ..+.+++|+.+. |.++ ....+++ ++.|+|+|++++++
T Consensus 315 li~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~~-p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~- 392 (486)
T 1e5x_A 315 LVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA- 392 (486)
T ss_dssp SSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-
T ss_pred cCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCCC-CccHHHHHHHHhccCCeEEEECHHHHHHHHH-
Confidence 78999999999887653 231 1 234556665442 2222 1223444 99999999999999
Q ss_pred HHHHcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcchh
Q 023801 213 LALKEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 213 l~~~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+++++|+++||+||+++++++++++++. .++++||+++|++|.||.+++
T Consensus 393 l~~~eGi~~ePssA~alaa~~~~~~~g~~~~~~~vV~i~Tg~~~k~~~~v 442 (486)
T 1e5x_A 393 QADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442 (486)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHHH
T ss_pred HHHHCCeEEChhHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCccCHHHH
Confidence 7788999999999999999999988764 467899999989999998854
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=322.13 Aligned_cols=255 Identities=20% Similarity=0.228 Sum_probs=196.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~---~~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||++.+++..+.++|+ ...|+++|+||||+|+|++|+++|++|+||||... +..|+.+++.|||+|+.++.
T Consensus 109 K~R~a~~~i~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 184 (418)
T 1x1q_A 109 KINNTLGQALLARRMGK----RRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAG 184 (418)
T ss_dssp THHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECST
T ss_pred HHHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCC
Confidence 89999999999988886 13455699999999999999999999999999853 23678999999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEec-CCCCCCc----chhhhhhchHHHHHhhhC----CCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYML-QQFENPA----NPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~~~----~~~~g~~t~~~Ei~~Q~~----~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..+++++.+.+.+ ++++.++.+|+ +++.|+. ++..||+|+++||++|+. ..||+||+|+|+||+++|++.
T Consensus 185 ~~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~ 264 (418)
T 1x1q_A 185 SRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFA 264 (418)
T ss_dssp TSSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHH
Confidence 3478888877754 45654455554 5544432 223599999999999983 359999999999999999999
Q ss_pred HHhhc-CCCcEEEEEecCCCCcc--------CCCCC--------------------CCcccCccCCCCC---ccCccccc
Q 023801 147 FLKEK-NPNIKLYGIEPTESPVL--------SGGKP--------------------GPHKIQGIGAGFV---PGVLEVNI 194 (277)
Q Consensus 147 ~~~~~-~~~~~vigV~~~~~~~~--------~~~~~--------------------~~~~~~gl~~~~~---~~~~~~~~ 194 (277)
++|++ .|.+|||||||.+++.. ..+.+ ..+..+|+..+.. .+.+....
T Consensus 265 ~~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~ 344 (418)
T 1x1q_A 265 PFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAG 344 (418)
T ss_dssp HHHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHHT
T ss_pred HHHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhcc
Confidence 99987 78999999999997321 11211 1123345443211 12234456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+++++.|+|+|++++++.|+++|||+++|++|+++++++++.++. .++++||+++|++|+||+++
T Consensus 345 ~~~~~~Vsd~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~~~~~~-~~~~~Vv~vlsG~g~kd~~~ 409 (418)
T 1x1q_A 345 VAEYASVTDEEALEGFKLLARLEGIIPALESAHAIAYAAKVVPEM-DKDQVVVINLSGRGDKDVTE 409 (418)
T ss_dssp SEEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHTTTS-CTTCEEEEEECBBGGGTHHH
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHhc-CCCCeEEEEECCCCCCCHHH
Confidence 789999999999999999999999999999999999999887653 36889999997778999885
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=314.55 Aligned_cols=253 Identities=21% Similarity=0.251 Sum_probs=199.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEE-eeCCchHHHHHHHHHHHCCCeEEEEeCCC-CC--HHHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLI-EPTSGNTGIGLAFMAAAKQYRLIITMPAS-MS--LERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv-~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~--~~~~~~~~~~Ga~v~~~~~ 76 (277)
|||++.+++..+.++|. +++| ++||||||+|+|++|+++|++|+||||.. .+ ..|+.+++.|||+|+.++.
T Consensus 82 K~R~a~~~i~~a~~~g~-----~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~ 156 (388)
T 1v8z_A 82 KTNNAIGQALLAKFMGK-----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNS 156 (388)
T ss_dssp HHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 79999999999988886 3455 58999999999999999999999999985 22 4678999999999999985
Q ss_pred -CCChHHHHHHHHH-HHHhCCCeEe-cCCCCCCcc----hhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHH
Q 023801 77 -AKGMKGAVQKAEE-ILAKTPNAYM-LQQFENPAN----PKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 -~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~~~~~----~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~ 145 (277)
..+++++.+.+.+ ++++.++.+| ++++.|+.+ +..||+|+++||++|+ +..||+||+|+|+|||++|++
T Consensus 157 ~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~ 236 (388)
T 1v8z_A 157 GSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIF 236 (388)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHH
Confidence 3468888877754 5666545444 566655432 2348999999999999 446999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCc--------cCCCCC--------------------CCcccCccCCCCC---ccCccccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPV--------LSGGKP--------------------GPHKIQGIGAGFV---PGVLEVNI 194 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~~---~~~~~~~~ 194 (277)
.+++. .|.+|||+|||++++. +..+++ ..+.++++..... .+.+....
T Consensus 237 ~~~~~-~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~ 315 (388)
T 1v8z_A 237 YPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQ 315 (388)
T ss_dssp GGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTT
T ss_pred HHHhh-CCCceEEEEccCccccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcC
Confidence 99984 8899999999998642 111111 1223344443211 12344566
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+++++.|+|+|++++++.|++++|++++|++|+++++++++.++. .++++||+|+|++|+||+++
T Consensus 316 ~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~-~~~~~vv~i~tg~g~k~~~~ 380 (388)
T 1v8z_A 316 RAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDI 380 (388)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHH
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeecccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccCHHH
Confidence 789999999999999999999999999999999999999988763 36889999998888999885
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=318.20 Aligned_cols=255 Identities=22% Similarity=0.248 Sum_probs=200.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDP 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~--~~~~~~~~~Ga~v~~~~~ 76 (277)
|||++.+++..+.++|+ +++|+ +||||||+|+|++|+++|++|+||||.. .+. .|+.+|+.+||+|+.++.
T Consensus 86 K~R~a~~~~~~a~~~g~-----~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~ 160 (396)
T 1qop_B 86 KTNQVLGQALLAKRMGK-----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (396)
T ss_dssp HHHHHHHHHHHHHHTTC-----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHcCc-----CEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 79999999999998886 45666 8999999999999999999999999985 433 467899999999999984
Q ss_pred -CCChHHHHHHHHHH-HHhCCCeEe-cCCCCCCc----chhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHH
Q 023801 77 -AKGMKGAVQKAEEI-LAKTPNAYM-LQQFENPA----NPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 77 -~~~~~~~~~~a~~~-~~~~~~~~~-~~~~~~~~----~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~ 145 (277)
..+++++.+.+.+. +++.++.+| ++++.|+. ++..||+|++.||++|+ +..||+||+|+|+||+++|++
T Consensus 161 ~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~ 240 (396)
T 1qop_B 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (396)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHH
Confidence 34788888877764 565545554 44544432 32348999999999999 457999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCc--------cCCCCC--------------------CCcccCccCCCCC---ccCccccc
Q 023801 146 KFLKEKNPNIKLYGIEPTESPV--------LSGGKP--------------------GPHKIQGIGAGFV---PGVLEVNI 194 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~--------~~~~~~--------------------~~~~~~gl~~~~~---~~~~~~~~ 194 (277)
.+++ ..|.+|||+|||.++.. +..+++ ..+.++|+..+.. .+.+....
T Consensus 241 ~~~~-~~~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~ 319 (396)
T 1qop_B 241 ADFI-NDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIG 319 (396)
T ss_dssp GGGT-TCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTT
T ss_pred HHHh-cCCCCEEEEEeCCCccccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcC
Confidence 9998 48899999999998641 111211 1233445543211 23344567
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 195 IDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 195 ~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
+++++.|+|+|++++++.|+++|||+++|++|+++++++++.++...++++||+++|++|+||++++
T Consensus 320 ~~~~~~V~d~e~~~a~~~l~~~egi~~~~~sa~a~a~a~~l~~~~~~~~~~vv~i~tg~g~k~~~~~ 386 (396)
T 1qop_B 320 RADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386 (396)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHH
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHH
Confidence 8999999999999999999999999999999999999998876532267899999988889998853
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=310.20 Aligned_cols=255 Identities=22% Similarity=0.266 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~---~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||++.+++..+.++|+ ...|+++|+||||+|+|++|+++|++|+||||.... ..|+.+|+.+||+|+.++.
T Consensus 113 K~R~a~~~~~~a~~~g~----~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~ 188 (422)
T 2o2e_A 113 KINNVLGQALLARRMGK----TRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTG 188 (422)
T ss_dssp HHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECST
T ss_pred HHHHHHHHHHHHHHcCC----CeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCC
Confidence 79999999999998886 134557999999999999999999999999998532 4678899999999999984
Q ss_pred CCChHHHHHHHHH-HHHhCCCeEe-cCCCCCC--c--chhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAEE-ILAKTPNAYM-LQQFENP--A--NPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~-~~~~~~~--~--~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..+++++.+.+.+ ++++.++.+| ++++.++ . ++..||++++.||++|+ +..||+||+|+|+||+++|++.
T Consensus 189 ~~~~~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~ 268 (422)
T 2o2e_A 189 SKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFH 268 (422)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSG
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHH
Confidence 3478888877754 5566445555 4444432 2 32458999999999997 3459999999999999999988
Q ss_pred HHhhcCCCcEEEEEecCCCC--------ccCCCCCC--------------------CcccCccCCCC---CccCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESP--------VLSGGKPG--------------------PHKIQGIGAGF---VPGVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~--------~~~~~~~~--------------------~~~~~gl~~~~---~~~~~~~~~~ 195 (277)
+++. .|.+|||||||.++. ++..+++. .+..+||..+. ..+.+....+
T Consensus 269 ~~~~-~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~ 347 (422)
T 2o2e_A 269 AFLD-DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGR 347 (422)
T ss_dssp GGTT-CTTCEEEEEEECC-------------------------------------------------------------C
T ss_pred HHhc-CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhCC
Confidence 8864 789999999999862 22222221 12233443211 1233455667
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++.|+|+|++++++.|+++|||+++++++++++++++++++. .++++||+++|++|+||++++
T Consensus 348 ~~~~~Vsd~e~~~a~~~l~~~eGi~~~~esa~A~a~a~~l~~~~-~~~~~vvvilsG~g~kd~~~~ 412 (422)
T 2o2e_A 348 VDYRPITDSEAMDAFGLLCRMEGIIPAIESAHAVAGALKLGVEL-GRGAVIVVNLSGRGDKDVETA 412 (422)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-CTTCEEEEECCSCSSSHHHHH
T ss_pred eeEEEECHHHHHHHHHHHHHHcCCccCchHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCCCCHHHH
Confidence 89999999999999999999999999999999999999887653 367899999988899998853
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=295.54 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=194.9
Q ss_pred CChhHHHHH---HHHHHcCCCCCCCcEEEeeCCchHHHHHH-HHHHHCCCeEEEEeCC-CCCHHHHHHHHHcCCEE--EE
Q 023801 1 MCRIGYSMI---SDAEAKGLITPGESVLIEPTSGNTGIGLA-FMAAAKQYRLIITMPA-SMSLERRIILRAFGAEL--VL 73 (277)
Q Consensus 1 ~dR~a~~~v---~~a~~~g~l~~g~~~vv~aSsGN~g~a~A-~aa~~~Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v--~~ 73 (277)
|||++.+++ .++ +++ +..+|+++||||||+|+| ++|+++|++|+||+|+ .+++.|+++|+.+||+| +.
T Consensus 107 Kdr~a~~l~~~l~~a-~~~----~~~~Iv~atsGNtG~A~A~~~a~~~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~ 181 (428)
T 1vb3_A 107 KDFGGRFMAQMLTHI-AGD----KPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVA 181 (428)
T ss_dssp HHHHHHHHHHHHHHH-TTT----CCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHH-Hhc----CCCEEEecCCchHHHHHHHHHhhhcCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEE
Confidence 799998884 445 233 236899999999999999 5999999999999999 59999999999999999 66
Q ss_pred eCCCCChHHHHHHHHHHHHh-----CCCeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHH
Q 023801 74 TDPAKGMKGAVQKAEEILAK-----TPNAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAG 145 (277)
Q Consensus 74 ~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aGi~ 145 (277)
+++ +++++.+.++++.++ ..++++++++ ||.+ +.||.++++||++|+.+ .||+||+|+|+||+++|++
T Consensus 182 v~g--~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~-~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~ 257 (428)
T 1vb3_A 182 IDG--DFDACQALVKQAFDDEELKVALGLNSANSI-NISR-LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGL 257 (428)
T ss_dssp EES--CHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHH-HHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHH
T ss_pred eCC--CHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHH-HHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHH
Confidence 664 788888888777642 1256677764 6766 78999999999999964 5999999999999999999
Q ss_pred HHHhhcCCCcEEEEEecCCCCcc----CCCCC-----CCcccCccCCCCCccCc------cccc-----cCeEEEeCHHH
Q 023801 146 KFLKEKNPNIKLYGIEPTESPVL----SGGKP-----GPHKIQGIGAGFVPGVL------EVNI-----IDEVVQVSSDE 205 (277)
Q Consensus 146 ~~~~~~~~~~~vigV~~~~~~~~----~~~~~-----~~~~~~gl~~~~~~~~~------~~~~-----~~~~~~v~d~e 205 (277)
.+++...|.+|||+|++.++ .+ ..+.. ..+..++++.+ .|.++ .... .++++.|+|+|
T Consensus 258 ~a~~~g~p~~kii~a~~~~~-~l~~~~~~G~~~~~~~~~tis~g~~i~-~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e 335 (428)
T 1vb3_A 258 LAKSLGLPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDET 335 (428)
T ss_dssp HHHHTTCCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHH
T ss_pred HHHHcCCCCCeEEeecCCCh-HHHHHHHcCCcccCCCCCcccchhcCC-CCccHHHHHHHHhcchhhhhCcEEEEECHHH
Confidence 99988778889999997763 33 12222 22334555433 12222 1222 67899999999
Q ss_pred HHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 206 AIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 206 ~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++++++.| +++|+++||+||+++++++++.+ +++++|+++|++|.||++++
T Consensus 336 ~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~~~----~~~~vV~i~tg~~~K~~~~v 386 (428)
T 1vb3_A 336 TQQTMREL-KELGYTSEPHAAVAYRALRDQLN----PGEYGLFLGTAHPAKFKESV 386 (428)
T ss_dssp HHHHHHHH-HHTTCCCCHHHHHHHHHHHTTCC----TTCEEEEEECBCGGGGHHHH
T ss_pred HHHHHHHH-HHCCeEECchHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHH
Confidence 99999999 99999999999999999987643 56899999988999998864
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=267.03 Aligned_cols=245 Identities=14% Similarity=0.108 Sum_probs=189.4
Q ss_pred CChhHHHH---HHHHH-HcCCCCCCCcEEEeeCCchHHH-HHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcC-CEE--
Q 023801 1 MCRIGYSM---ISDAE-AKGLITPGESVLIEPTSGNTGI-GLAFMAAAKQYRLIITMPAS-MSLERRIILRAFG-AEL-- 71 (277)
Q Consensus 1 ~dR~a~~~---v~~a~-~~g~l~~g~~~vv~aSsGN~g~-a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~G-a~v-- 71 (277)
|||++.++ +.+++ ++|. ..+|+++||||||. ++|++|+++|++++||+|++ +++.|+.+|+.+| ++|
T Consensus 117 KDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~gganV~v 192 (468)
T 4f4f_A 117 KDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGFSNVHA 192 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHHHHHHHHCSCCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhccCCcEEEEeCCCCCCHHHHHHHHhcCCCeEEE
Confidence 79999999 77775 5554 14799999999995 55777999999999999998 9999999999997 465
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCC-----CeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCE---EEEecCCchhHHH
Q 023801 72 VLTDPAKGMKGAVQKAEEILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA---LVSGIGTGGTITG 143 (277)
Q Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~---iv~pvG~Gg~~aG 143 (277)
+.+++ +|+++.+.+++++++.+ +++++++ .||.. +.||+|+++||++|++ .+|. |+||+|+||+++|
T Consensus 193 v~v~g--~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~r-i~GQ~T~~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g 267 (468)
T 4f4f_A 193 LSIEG--NFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWAR-IMPQVVYYFTAALSLG-APDRAVSFTVPTGNFGDIFA 267 (468)
T ss_dssp EEEES--CHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHH-HGGGHHHHHHHHHHTT-TTSSCEEEEEECSSSHHHHH
T ss_pred eecCC--CHHHHHHHHHHHHhccccccccceEeCCC-CCHHH-HHhHHHHHHHHHHhcc-cCCCCeEEEEEeCCcHHHHH
Confidence 56664 79999999988876431 4666766 47776 8899999999999994 7898 9999999999999
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCccC----CCCC-----CCcccCccCCCCCccCccc----------------------
Q 023801 144 AGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPGVLEV---------------------- 192 (277)
Q Consensus 144 i~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~~~~---------------------- 192 (277)
++.+.+...|..|+|+| +.+++++. .++. ..+..+++.... +.++..
T Consensus 268 ~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~smdi~~-~sN~erl~~~l~~~d~~~~~~~~~~l~~ 345 (468)
T 4f4f_A 268 GYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSMDIQI-SSNFERLLFEAHGRDAAAVRGLMQGLKQ 345 (468)
T ss_dssp HHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGGCCSS-CTTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchhhcCc-cchHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 99884443467799999 88777653 1221 223344544321 111100
Q ss_pred ------------ccc--CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCc
Q 023801 193 ------------NII--DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYL 258 (277)
Q Consensus 193 ------------~~~--~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~ 258 (277)
... ...+.|+|+|+.++++.+++++|+++||++|++++++.++. .++.++|++.|.+|.|+.
T Consensus 346 ~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vEP~~Ava~aa~~~~~----~~~~~~V~l~Ta~~~Kf~ 421 (468)
T 4f4f_A 346 SGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVKVAREKA----SGTAPMVVLATAHPAKFP 421 (468)
T ss_dssp HSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHC----CSSSCEEEEECBCGGGSH
T ss_pred cCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEECHhHHHHHHHHHHHh----CCCCeEEEEecCCccccH
Confidence 000 12789999999999999999999999999999999998863 256789999988999887
Q ss_pred ch
Q 023801 259 SS 260 (277)
Q Consensus 259 ~~ 260 (277)
+.
T Consensus 422 ~~ 423 (468)
T 4f4f_A 422 DA 423 (468)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=267.53 Aligned_cols=252 Identities=13% Similarity=0.051 Sum_probs=186.9
Q ss_pred CChhHHHHH---HHHH-HcCC-----CCCCCcEEEeeCCchHHHHHHHHH--HHCCCeEEEEeCCC-CCHHHHHHHH---
Q 023801 1 MCRIGYSMI---SDAE-AKGL-----ITPGESVLIEPTSGNTGIGLAFMA--AAKQYRLIITMPAS-MSLERRIILR--- 65 (277)
Q Consensus 1 ~dR~a~~~v---~~a~-~~g~-----l~~g~~~vv~aSsGN~g~a~A~aa--~~~Gl~~~vvvp~~-~~~~~~~~~~--- 65 (277)
|||++..++ .+++ ++|. ++++ .+|+++||||||.| |++| ++.|++++||+|++ +++.++.+|.
T Consensus 124 KDrga~~~~~~~~~a~~~~g~~~~~~~~~~-~~Iv~ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~ 201 (514)
T 1kl7_A 124 KDVALQFVGNLFEYFLQRTNANLPEGEKKQ-ITVVGATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVP 201 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCSSSCCC-EEEEEECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccCCC-CEEEECCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhc
Confidence 799999984 4443 3462 5555 67999999999999 6666 88999999999997 8987766663
Q ss_pred HcCCEEEEeCCCCChHHHHHHHHHHHHhCC-----CeEecCCCCCCcchhhhhhchHHHHHhhh-C---CCCCEEEEecC
Q 023801 66 AFGAELVLTDPAKGMKGAVQKAEEILAKTP-----NAYMLQQFENPANPKIHYETTGPELWKGS-G---GRIDALVSGIG 136 (277)
Q Consensus 66 ~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~-~---~~~d~iv~pvG 136 (277)
.+|++++.+++ +|+++.+.++++.++.+ +.++.++. ||.. +.||.+.++|+++|+ + +.||+||+|+|
T Consensus 202 g~~~~vv~v~g--~fdda~~~vk~l~~~~~~~~~~~~~~~Ns~-N~~r-i~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~G 277 (514)
T 1kl7_A 202 DENVQTLSVTG--TFDNCQDIVKAIFGDKEFNSKHNVGAVNSI-NWAR-ILAQMTYYFYSFFQATNGKDSKKVKFVVPSG 277 (514)
T ss_dssp CTTEEEEEESS--CHHHHHHHHHHHHHCSSCC--CCBCCCCSC-CHHH-HHHHHHHHHHHHHHHHSSSSCCCEEEEEECS
T ss_pred CCCEEEEEcCC--CHHHHHHHHHHHHhcccccccceeEeeCCC-CHhH-HhhHHHHHHHHHHHHhhhcCCCCcEEEEECC
Confidence 45556666665 79999999999987642 22333332 4443 679999999999998 4 35899999999
Q ss_pred CchhHHHHHHHHhhcCCCcEEEEEecCCCCccC----CCCC------CCcccCccCCCCCccCccc---cccC-------
Q 023801 137 TGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP------GPHKIQGIGAGFVPGVLEV---NIID------- 196 (277)
Q Consensus 137 ~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~------~~~~~~gl~~~~~~~~~~~---~~~~------- 196 (277)
+||++.|++...+...|.+|+|+|+++++ ++. .+.. ..+...++... .|.++.. ...+
T Consensus 278 ngG~i~a~~~ak~~G~p~~rli~v~~~n~-~l~~~~~~G~~~~~~~~~~Tis~amdi~-~psn~er~l~~l~~~~~~~~~ 355 (514)
T 1kl7_A 278 NFGDILAGYFAKKMGLPIEKLAIATNEND-ILDRFLKSGLYERSDKVAATLSPAMDIL-ISSNFERLLWYLAREYLANGD 355 (514)
T ss_dssp SSHHHHHHHHHHHHTCCCCCEEEEECSCC-HHHHHHHHSEEECCSSCCCCSCGGGCCS-SCTTHHHHHHHHHHHHTSTTC
T ss_pred chHHHHHHHHHHHcCCCCCEEEEEeCCcc-hHHHHHhcCCccCCCCCCCeechhhhcC-CCCcHHHHHHHHhcccccccc
Confidence 99999999875444457789999999984 442 1211 12222333221 2333221 1111
Q ss_pred -----------------------------------eEEEeCHHHHHHHHHHHHHHc----CCeeeccHHHHHHHHHHHHh
Q 023801 197 -----------------------------------EVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIEIAK 237 (277)
Q Consensus 197 -----------------------------------~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~alaa~~~~~~ 237 (277)
.++.|+|+|++++++.+++++ |+++||+||+++++++++.+
T Consensus 356 ~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~~~ 435 (514)
T 1kl7_A 356 DLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIA 435 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhcCCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHHHH
Confidence 489999999999999999999 99999999999999999887
Q ss_pred cCCCCCCeEEEEecCCCCCCcch
Q 023801 238 RPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 238 ~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++..+++++|++.|.+|.||.+.
T Consensus 436 ~g~~~~~~vV~l~Ta~~~Kf~~~ 458 (514)
T 1kl7_A 436 KDNDKSIQYISLSTAHPAKFADA 458 (514)
T ss_dssp HHCCTTSEEEEEECBCGGGGHHH
T ss_pred hccCCCCcEEEEECCchhhhHHH
Confidence 63235778999999999988764
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-33 Score=253.64 Aligned_cols=245 Identities=12% Similarity=0.031 Sum_probs=185.9
Q ss_pred CChhHHHH---HHHHHH-cCCCCCCCcEEEeeCCchHHHHHHHHHH-HCCCeEEEEeCCC-CCHHHHHHHHHcCC---EE
Q 023801 1 MCRIGYSM---ISDAEA-KGLITPGESVLIEPTSGNTGIGLAFMAA-AKQYRLIITMPAS-MSLERRIILRAFGA---EL 71 (277)
Q Consensus 1 ~dR~a~~~---v~~a~~-~g~l~~g~~~vv~aSsGN~g~a~A~aa~-~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga---~v 71 (277)
|||++..+ +.++++ +|. ..+|+++||||||.|+|++++ +.|++++||+|++ +++.|+.+|+.+|+ ++
T Consensus 130 KDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~k~~qm~~~Ga~nv~v 205 (487)
T 3v7n_A 130 KDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAFQTAQMYSLQDPNIFN 205 (487)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHHHHHHHHTCCCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCCHHHHHHHHhcCCCcEEE
Confidence 79999998 888864 454 146999999999999777776 8999999999998 99999999999998 67
Q ss_pred EEeCCCCChHHHHHHHHHHHH------hCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHH
Q 023801 72 VLTDPAKGMKGAVQKAEEILA------KTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTIT 142 (277)
Q Consensus 72 ~~~~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~a 142 (277)
+.+++ +|+++.+.++++.+ +. +.++++++ ||.. ++||++.++|+..|+. +.||+|++|+|+||+++
T Consensus 206 v~v~G--~fDda~~~vk~~~~d~~~~~~~-~l~~vns~-Np~r-i~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~ 280 (487)
T 3v7n_A 206 LAVNG--VFDDCQDIVKAVSNDHAFKAQQ-KIGTVNSI-NWAR-VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVC 280 (487)
T ss_dssp EEEES--CHHHHHHHHHHHHTCHHHHHHT-TEECCSTT-CHHH-HHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHH
T ss_pred EEECC--CHHHHHHHHHHhhhchHHHhhc-CeeeeCCC-CHHH-HHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHH
Confidence 77775 78999998888865 33 56777775 6776 8899988888888873 35999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEEecCCCCccC----CCCC-----CCcc---cCccCCCCCccCcc---c---------------
Q 023801 143 GAGKFLKEKNPNIKLYGIEPTESPVLS----GGKP-----GPHK---IQGIGAGFVPGVLE---V--------------- 192 (277)
Q Consensus 143 Gi~~~~~~~~~~~~vigV~~~~~~~~~----~~~~-----~~~~---~~gl~~~~~~~~~~---~--------------- 192 (277)
|++.+.+...|.+|+|++++++ +++. .++. ..+. ..++..+. |.++. +
T Consensus 281 g~~~A~~mGlp~~rli~a~~~n-~~l~~~~~~G~~~~~~~~~Ti~t~s~smdI~~-psn~er~l~~l~~~d~~~~~~~m~ 358 (487)
T 3v7n_A 281 AGHIARMMGLPIEKLVVATNEN-DVLDEFFRTGAYRVRSAQDTYHTSSPSMDISK-ASNFERFVFDLLGRDPARVVQLFR 358 (487)
T ss_dssp HHHHHHHTTCCEEEEEEECTTC-HHHHHHHHHSEEEC-------------------CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCC-cHHHHHHHcCCcccCCCCCccccCCchhccCC-CccHHHHHHHHhCCCHHHHHHHHH
Confidence 9998765445777999999998 4432 2211 1122 33333221 11100 0
Q ss_pred --------------------cccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 023801 193 --------------------NIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPS 252 (277)
Q Consensus 193 --------------------~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~ 252 (277)
......+.|+|+|++++++.+++++|+++||+||++++++.++.+ ++.++|++.|.
T Consensus 359 ~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~~~----~~~~~V~l~Ta 434 (487)
T 3v7n_A 359 DVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLR----PGVPMVVLETA 434 (487)
T ss_dssp HHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTSCC----TTSCEEEEECB
T ss_pred HHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHhhC----CCCcEEEEecC
Confidence 001245789999999999999999999999999999999887532 46678999988
Q ss_pred CCCCCcch
Q 023801 253 FGERYLSS 260 (277)
Q Consensus 253 gG~~~~~~ 260 (277)
.+.|+.+.
T Consensus 435 ~p~Kf~~~ 442 (487)
T 3v7n_A 435 QPIKFGES 442 (487)
T ss_dssp CGGGGHHH
T ss_pred CccccHHH
Confidence 89988774
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.38 Score=35.79 Aligned_cols=97 Identities=22% Similarity=0.158 Sum_probs=65.4
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
.+++....|..|..+|...+..|.+++++-. .+.+.+.++..|..++.-+... .
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~--~--------------------- 61 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAAN--E--------------------- 61 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTS--H---------------------
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCC--H---------------------
Confidence 3588888999999999999999999888744 4566777777777765544311 1
Q ss_pred CCCCcchhhhhhchHHHHHhhhC-CCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEe
Q 023801 103 FENPANPKIHYETTGPELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIE 161 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~~-~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~ 161 (277)
|++++.+ ...|.+|++++.-....-+...++..+|..++++-.
T Consensus 62 ----------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 62 ----------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ----------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ----------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1122211 246888888877554444556677777878877654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.77 Score=39.56 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=47.0
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+++++..+++|.+.+| ..+|.-|.+++..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 156 ~~~l~~~~~~~g~~VlV-~GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 156 YKGLKVTDTRPGQWVVI-SGIGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp HHHHHTTTCCTTSEEEE-ECCSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHcCCCCCCEEEE-ECCCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 45566778899966555 45688999999999999997665533 5688888999999765543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.65 Score=39.94 Aligned_cols=60 Identities=23% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHH-HHcCCEEEE
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVL 73 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~-~~~Ga~v~~ 73 (277)
+++ +.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.+ +.+|++.++
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~~ 200 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGAI 200 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEEE
Confidence 444 7788999977777777899999999999999997666532 45777777 788886544
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.63 Score=39.86 Aligned_cols=58 Identities=28% Similarity=0.290 Sum_probs=45.4
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.++.
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~ 191 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETID 191 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4577899977666666899999999999999997666543 567888888888865543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.67 Score=40.44 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=46.2
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.++ +.+.+++|.+.+|.. +|.-|.+++..|+.+|.+++++. .++.|++.++.+|++.++.
T Consensus 179 ~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi~ 239 (363)
T 3uog_A 179 FALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTS---SSREKLDRAFALGADHGIN 239 (363)
T ss_dssp HHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEe---cCchhHHHHHHcCCCEEEc
Confidence 444 678889997665655 89999999999999999866653 3567888888999865544
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.62 Score=40.52 Aligned_cols=61 Identities=23% Similarity=0.145 Sum_probs=47.1
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.++ +.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.++.
T Consensus 157 ~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~ 218 (353)
T 4dup_A 157 ANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGIN 218 (353)
T ss_dssp HHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEe
Confidence 344 6678899977666668999999999999999998665532 557888888889876543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.97 Score=38.82 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=45.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.|++.++.+|++.++..
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINA 200 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeC
Confidence 4567889977666666899999999999999998666543 4678888888998765543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.76 Score=39.29 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=47.2
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.++++++.+++|.+.+|...+|.-|.+++..|+.+|.+++++. ++.+++.++.+|++.++..
T Consensus 142 ~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 142 LQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCINY 203 (321)
T ss_dssp HHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEET
T ss_pred HHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEeC
Confidence 3455778899996655555699999999999999999766553 3466888899999865543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.62 Score=40.32 Aligned_cols=60 Identities=23% Similarity=0.362 Sum_probs=45.6
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++ +.+.+++|.+.+|...+|.-|.+++..++.+|.+++++... +.+++.++.+|++.++
T Consensus 149 ~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~v~ 209 (342)
T 4eye_A 149 FAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNR---TAATEFVKSVGADIVL 209 (342)
T ss_dssp HHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS---GGGHHHHHHHTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEe
Confidence 344 67788999776777777999999999999999987666543 3566777778886554
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.86 Score=36.03 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe-------C--CCCCHHHHHHHHHcCCEEEEe
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-------P--ASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv-------p--~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.....+.+|.+.|- + ..||.+|+|.++..++-.. -|++.++|. | ...++..++.++..|.+|+..
T Consensus 31 tl~la~era~e~~I-k---~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 31 TLRLAVERAKELGI-K---HLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp HHHHHHHHHHHHTC-C---EEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHcCC-C---EEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEE
Confidence 44556777888774 2 4455556699887766633 688998887 3 355889999999999999988
Q ss_pred CC
Q 023801 75 DP 76 (277)
Q Consensus 75 ~~ 76 (277)
..
T Consensus 105 tH 106 (201)
T 1vp8_A 105 SH 106 (201)
T ss_dssp CC
T ss_pred ec
Confidence 64
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.62 E-value=1.1 Score=38.77 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=45.7
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
.++ +.+.+++|.+.+|...+|.-|.+++..|+..|.+++++ .++.+++.++.+|++.
T Consensus 140 ~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 140 EGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp HHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 344 67888999776666668999999999999999975554 3567888889999987
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.35 E-value=0.91 Score=39.33 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=45.4
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+++++..+++|.+.+|. .+|.-|.+.+..|+.+|. +++++ ..++.|++.++.+|++.++
T Consensus 156 ~~al~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~~---~~~~~~~~~~~~lGa~~vi 216 (352)
T 3fpc_A 156 FHGAELANIKLGDTVCVI-GIGPVGLMSVAGANHLGAGRIFAV---GSRKHCCDIALEYGATDII 216 (352)
T ss_dssp HHHHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCSSEEEE---CCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE---CCCHHHHHHHHHhCCceEE
Confidence 345577788999776565 579999999999999998 45554 3456788888999986544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.32 E-value=1.4 Score=38.84 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=43.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+++++..+++|.+.+| ..+|.-|...+..|+.+|.+.++.+ ..++.|++.++.+|+++
T Consensus 176 ~al~~~~~~~g~~VlV-~GaG~vG~~aiqlAk~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~ 233 (398)
T 1kol_A 176 HGAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVG--DLNPARLAHAKAQGFEI 233 (398)
T ss_dssp HHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEE--ESCHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCCeEEEE--cCCHHHHHHHHHcCCcE
Confidence 3445677889966555 5579999999999999998544443 23568889999999984
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=1 Score=39.47 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=45.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+++...+++|.+.+|. .+|.-|.+++..|+.+|.+-++++ ..++.|++..+.+|++.++.
T Consensus 173 ~~l~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 173 HGVDLSGIKAGSTVAIL-GGGVIGLLTVQLARLAGATTVILS--TRQATKRRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEEC
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEC
Confidence 34566778898665555 569999999999999999544443 33567888889999976543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.76 Score=40.24 Aligned_cols=52 Identities=25% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 19 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 19 ~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
++|.+.+|...+|.-|.+++..|+.+|.+++++. ++.|++.++.+|++.++.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~ 214 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFD 214 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEE
Confidence 6776766666779999999999999999866553 356788889999975554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.04 E-value=1.6 Score=37.55 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=48.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+.+...+++|.+ |+...+|.-|...+..|+.+|...++++. .++.|++..+.+||+.++...
T Consensus 151 ~~~~~~~~~~g~~-VlV~GaG~vG~~aiq~ak~~G~~~vi~~~--~~~~k~~~a~~lGa~~~i~~~ 213 (346)
T 4a2c_A 151 HAFHLAQGCENKN-VIIIGAGTIGLLAIQCAVALGAKSVTAID--ISSEKLALAKSFGAMQTFNSS 213 (346)
T ss_dssp HHHHHTTCCTTSE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhccCCCCE-EEEECCCCcchHHHHHHHHcCCcEEEEEe--chHHHHHHHHHcCCeEEEeCC
Confidence 3456677888865 55556788999999999999999877653 356889999999998776654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.99 Score=38.89 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=44.9
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+...+++|.+.+|...+|.-|.+++..++.+|.+++++.... .+++.++.+|++.++.
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~---~~~~~~~~lga~~~~~ 195 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN---KHTEELLRLGAAYVID 195 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEEE
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHhCCCcEEEe
Confidence 34677889997777777777999999999999999876665433 4566677788875543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=1.8 Score=37.62 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=44.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.+++|.+.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.++.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~ 214 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPIN 214 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEEe
Confidence 4567888866666666899999999999999997655543 457788888899875543
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.35 E-value=1.2 Score=39.02 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=40.6
Q ss_pred CCCcEEEee-CCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 20 PGESVLIEP-TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 20 ~g~~~vv~a-SsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+|.+.+|.. .+|.-|.+++..|+.+|.+++++. .++.|++.++.+|++.++..
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~~~ 223 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIV---RKQEQADLLKAQGAVHVCNA 223 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEE---SSHHHHHHHHHTTCSCEEET
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHhCCCcEEEeC
Confidence 444656653 889999999999999999866654 35688999999999755543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=2 Score=37.15 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=43.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 212 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGF 212 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 5677889877666666899999999999999997665543 45677777888887544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=2.6 Score=35.97 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 194 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAA 194 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEE
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 5677888877777777899999999999999987665533 4566666777887543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.94 E-value=2 Score=37.01 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHc-CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 11 DAEAK-GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 11 ~a~~~-g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+++.+ +.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 156 ~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~ 215 (343)
T 2eih_A 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADET 215 (343)
T ss_dssp HHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEE
Confidence 44544 57888877777777799999999999999997665533 4567777777887643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=2 Score=37.02 Aligned_cols=60 Identities=22% Similarity=0.193 Sum_probs=44.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++++..+++|.+.+|+..+|.-|.+++..++.. |.+++++.. ++.+++.++.+|++.+.
T Consensus 161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~ 221 (347)
T 1jvb_A 161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVI 221 (347)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEe
Confidence 4445577888877777777779999999999998 987555432 45677777778876543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.61 E-value=2.8 Score=36.23 Aligned_cols=60 Identities=28% Similarity=0.334 Sum_probs=45.2
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++ +.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.++
T Consensus 160 ~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~ 220 (351)
T 1yb5_A 160 RALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 220 (351)
T ss_dssp HHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEEE
Confidence 344 3677889977777777899999999999999987665533 45677777888876443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.51 E-value=2.7 Score=32.76 Aligned_cols=55 Identities=31% Similarity=0.470 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+.+.++.+|++.
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~ 86 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEY 86 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSE
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCE
Confidence 4567888877666666899999999999999987665533 345666666666643
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=3.7 Score=36.62 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=41.3
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.+|+....|..|+.+|-.-...|++++++ +..+.+++.++..|..++.-+.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvI---d~d~~~v~~~~~~g~~vi~GDa 55 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVL---DHDPDHIETLRKFGMKVFYGDA 55 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEE---ECCHHHHHHHHHTTCCCEESCT
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHhCCCeEEEcCC
Confidence 34888889999999999999999998887 4456778888888877766654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.04 E-value=3 Score=36.85 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=41.9
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+++|.+.+|. .+|.-|.+.+..|+.+|..-++.+ ..++.|++.++.+|++.++.
T Consensus 209 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~--~~~~~~~~~~~~lGa~~vi~ 264 (404)
T 3ip1_A 209 GGIRPGDNVVIL-GGGPIGLAAVAILKHAGASKVILS--EPSEVRRNLAKELGADHVID 264 (404)
T ss_dssp CCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEE--CSCHHHHHHHHHHTCSEEEC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCCEEEc
Confidence 478899665555 569999999999999999434433 33568888999999976553
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.03 E-value=2.9 Score=35.61 Aligned_cols=59 Identities=24% Similarity=0.144 Sum_probs=43.5
Q ss_pred HHHH-cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 11 DAEA-KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 11 ~a~~-~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+++. .+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 130 ~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T 1qor_A 130 YLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQV 189 (327)
T ss_dssp HHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 3443 677888877677776899999999999999987665533 3566777777777543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.58 Score=39.86 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++++...+++|.+.+|... |.-|.+++..|+.+|.+++++. ++.|++.++.+|++.++
T Consensus 132 ~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 132 WQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 34557788999976555555 9999999999999999766654 33567778889997665
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.6 Score=37.66 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=37.9
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..||...+|.-|.+++..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 167 ~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 167 AFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNE 216 (349)
T ss_dssp EEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEET
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEEC
Confidence 4555668899999999999999997666643 3456777788998765544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.01 E-value=3.6 Score=35.37 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+++++..+++|.+.+|+..+|.-|.+++..++..|.+++++... +.+++.++.+|++.+
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~ 218 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVF 218 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceE
Confidence 45555568888787788888999999999999999876665433 245566677887643
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=89.99 E-value=1.6 Score=37.88 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=45.8
Q ss_pred HHHHc-CCCCCC-CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEE
Q 023801 11 DAEAK-GLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~-g~l~~g-~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~ 73 (277)
.++.+ +.+++| .+.+|...+|.-|..++..|+.+|.+.+++...... ..+.+.++.+|++.++
T Consensus 156 ~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (364)
T 1gu7_A 156 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221 (364)
T ss_dssp HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred HHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence 34444 578888 776666667999999999999999987777654433 3345666889987544
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.96 E-value=3.3 Score=35.87 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHc--CCCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 10 SDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 10 ~~a~~~--g~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+++++ ..+++|.+.+|. ..|.-|..++..|+.+ |.+++++.+ ++.|++.++.+||+.++.
T Consensus 174 ~~al~~~~~~~~~g~~VlV~-GaG~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 237 (359)
T 1h2b_A 174 YRAVKKAARTLYPGAYVAIV-GVGGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVVD 237 (359)
T ss_dssp HHHHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEEe
Confidence 344555 778888664444 4599999999999999 987555432 467888889999975543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.94 E-value=2.3 Score=36.98 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=42.6
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+...+++|.+.+|. .+|.-|.+++..|+.+|.+.++.+. .++.|++.++.+|++.++.
T Consensus 184 ~~~~~~~g~~VlV~-GaG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 241 (371)
T 1f8f_A 184 NALKVTPASSFVTW-GAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVIN 241 (371)
T ss_dssp TTTCCCTTCEEEEE-SCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEec
Confidence 56778898765555 4799999999999999985333332 2567888888999865543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=3.9 Score=35.25 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=42.8
Q ss_pred HcCCCCCC--CcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHH-cCCEEE
Q 023801 14 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELV 72 (277)
Q Consensus 14 ~~g~l~~g--~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~-~Ga~v~ 72 (277)
+.+.+++| .+.+|+..+|.-|.+++..++..|. +++++.. ++.+++.++. +|++.+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~~ 211 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDAA 211 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSEE
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCceE
Confidence 56778888 8878887789999999999999998 6665543 3466777765 887543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.64 E-value=1.6 Score=38.27 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=44.8
Q ss_pred HHHHcCC-CCCCCcEEEeeCCchHHHHHHHHHHHCC-CeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~-l~~g~~~vv~aSsGN~g~a~A~aa~~~G-l~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++++.. +++|.+.+|.. +|.-|.+++..|+.+| .+++++.+ ++.|++.++.+|++.++
T Consensus 185 ~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi 245 (380)
T 1vj0_A 185 HAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTL 245 (380)
T ss_dssp HHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEE
Confidence 4455667 88887666666 8999999999999999 47666543 45788888999987544
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.64 E-value=1.3 Score=38.18 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=43.4
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++++..+++|.+.+|. .+|.-|.+++..|+.+|.+++++.. ++.|++.++.+|++.++
T Consensus 167 ~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVA-GFGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHHTTCCTTCEEEEE-SCSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence 34455578888665554 5699999999999999997665533 33567778889997666
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=89.58 E-value=1.3 Score=39.72 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=46.0
Q ss_pred cCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 15 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 15 ~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
...+++|.+.+|...+|.-|.+++..|+.+|.+++++. .++.|++.++.+|++.++
T Consensus 215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~---~~~~~~~~~~~lGa~~~i 270 (447)
T 4a0s_A 215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVV---SSAQKEAAVRALGCDLVI 270 (447)
T ss_dssp TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHTTCCCEE
T ss_pred ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCCEEE
Confidence 47788997766666679999999999999999877775 367888999999997654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.56 E-value=3.1 Score=35.54 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+++ +.+.+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+
T Consensus 135 ~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~ 194 (333)
T 1wly_A 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHT 194 (333)
T ss_dssp HHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEE
T ss_pred HHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 344 3677888877666666899999999999999987665533 3466777777787643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.41 E-value=1.9 Score=38.89 Aligned_cols=57 Identities=30% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..+++|.+.+|...+|.-|.+.+..|+.+|.+++++.. ++.|++.++.+|++.++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 67889976666666799999999999999998877763 6789999999999876554
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.37 E-value=2.9 Score=36.12 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=42.9
Q ss_pred HHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 12 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 12 a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++++..+++|.+.+|.. +|.-|.+++..|+.+|.+++++ . .++.+++.++.+|++.++
T Consensus 160 al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~-~--~~~~~~~~~~~lGa~~~~ 217 (352)
T 1e3j_A 160 ACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCT-A--RSPRRLEVAKNCGADVTL 217 (352)
T ss_dssp HHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEE-E--SCHHHHHHHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE-c--CCHHHHHHHHHhCCCEEE
Confidence 44556688886656655 6999999999999999984333 2 356788888999997543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.20 E-value=4 Score=35.08 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=43.5
Q ss_pred HcCCCC------CCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLIT------PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~------~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+...++ +|.+.+|...+|.-|.+++..|+.+|.+++++. .++.|++.++.+|++.++
T Consensus 138 ~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~vi 200 (346)
T 3fbg_A 138 DVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTA---SRNETIEWTKKMGADIVL 200 (346)
T ss_dssp TTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEC---CSHHHHHHHHHHTCSEEE
T ss_pred HhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHhcCCcEEE
Confidence 456676 786766666899999999999999999755552 356788888888886544
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=3.4 Score=35.53 Aligned_cols=57 Identities=35% Similarity=0.415 Sum_probs=42.5
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+++++..+ +|.+.+|... |.-|.+++..++.+|. +++++.. ++.+++.++.+|++.+
T Consensus 159 ~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~ 216 (348)
T 2d8a_A 159 DTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYV 216 (348)
T ss_dssp HHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEE
T ss_pred HHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEE
Confidence 44566777 8877666655 9999999999999998 6665533 4677888888888644
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.13 E-value=1.8 Score=37.58 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=46.3
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~ 73 (277)
+.+.+++|.+.+|...+|.-|..+...|+.+|.+.++++..... ..+++.++.+|++.++
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 45778899776666667999999999999999998877755433 4567788899997554
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=88.83 E-value=3.5 Score=35.35 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=39.0
Q ss_pred CCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 16 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 16 g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
..+++|.+.+|... |.-|.+++..++.+|.+++++. .++.+++.++.+|++.+
T Consensus 160 ~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~ 212 (339)
T 1rjw_A 160 TGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADLV 212 (339)
T ss_dssp HTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSEE
T ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHCCCCEE
Confidence 35788866555555 7799999999999998655543 25677888888898643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=3 Score=35.79 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+++...++||.+.+| ..+|.-|...+..++++ |.+++++. .++.|++..+.+|++.++..
T Consensus 154 ~~l~~~~~~~g~~VlV-~GaG~~g~~a~~~a~~~~g~~Vi~~~---~~~~r~~~~~~~Ga~~~i~~ 215 (348)
T 4eez_A 154 KAIKVSGVKPGDWQVI-FGAGGLGNLAIQYAKNVFGAKVIAVD---INQDKLNLAKKIGADVTINS 215 (348)
T ss_dssp HHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTSCCEEEEEE---SCHHHHHHHHHTTCSEEEEC
T ss_pred eeecccCCCCCCEEEE-EcCCCccHHHHHHHHHhCCCEEEEEE---CcHHHhhhhhhcCCeEEEeC
Confidence 3445556788865444 55666666666666655 66666553 35678888999999876654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=88.55 E-value=3.5 Score=36.25 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=42.8
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAEL 71 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v 71 (277)
+++++..+++|.+.+|. .+|.-|..++..|+.+|. +++++.+ ++.|++.++.+|+++
T Consensus 176 ~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~ 233 (398)
T 2dph_A 176 HGCVSAGVKPGSHVYIA-GAGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFET 233 (398)
T ss_dssp HHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEE
T ss_pred HHHHHcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcE
Confidence 44456778999665554 569999999999999998 5555432 567888889999974
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=3.5 Score=35.36 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=42.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHH-HcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~-~~Ga~v~ 72 (277)
+...+++|.+.+|+..+|.-|.+++..++..|.+++++.. ++.+++.++ .+|++.+
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~~ 205 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDDA 205 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSEE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCceE
Confidence 5677888877777777899999999999999987555432 456777776 6887543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.37 E-value=3.1 Score=36.31 Aligned_cols=61 Identities=25% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHH-HcCC----CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAE-AKGL----ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~-~~g~----l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.++ +.+. +++|.+.+|...+|.-|.+++..|+.+|.+++++. ++.+++.++.+|++.++..
T Consensus 169 ~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~~ 234 (375)
T 2vn8_A 169 SAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVIDY 234 (375)
T ss_dssp HHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred HHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEEC
Confidence 344 3566 78887766666689999999999999998765543 2356777889999765543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.56 E-value=1.5 Score=37.54 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=42.8
Q ss_pred HHcCCCCCCC-cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~-~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++..+++|. +.+|...+|.-|..++..|+.+|.+++++.... .|++.++.+|++.++
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~~i 199 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVL 199 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEE
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCcEEE
Confidence 4456678874 666666679999999999999999866665442 456677889987554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=87.03 E-value=2.6 Score=36.49 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=43.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++++..+++|.+.+|. .+|.-|.+++..|+.+|. +++++. .++.|++.++.+|++.++
T Consensus 162 ~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~---~~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 162 HACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQVVVTD---LSATRLSKAKEIGADLVL 221 (356)
T ss_dssp HHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEE---SCHHHHHHHHHTTCSEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC---CCHHHHHHHHHhCCCEEE
Confidence 34455678888665555 569999999999999998 555443 256788888999996443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.91 E-value=3.2 Score=36.19 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+...+++|.+.+|. ..|.-|.+++..|+.+|.+ ++++ . .++.|++..+.+|++.++
T Consensus 186 ~~~~~~~~g~~VlV~-GaG~vG~~a~q~a~~~Ga~~Vi~~-~--~~~~~~~~a~~lGa~~vi 243 (378)
T 3uko_A 186 WNTAKVEPGSNVAIF-GLGTVGLAVAEGAKTAGASRIIGI-D--IDSKKYETAKKFGVNEFV 243 (378)
T ss_dssp HTTTCCCTTCCEEEE-CCSHHHHHHHHHHHHHTCSCEEEE-C--SCTTHHHHHHTTTCCEEE
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE-c--CCHHHHHHHHHcCCcEEE
Confidence 366788899775555 5599999999999999994 5444 2 233677788899986543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=2.2 Score=36.90 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.1
Q ss_pred cCCCCCC------CcEEEeeCCchHHHHH-HHHH-HHCCCe-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 15 KGLITPG------ESVLIEPTSGNTGIGL-AFMA-AAKQYR-LIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 15 ~g~l~~g------~~~vv~aSsGN~g~a~-A~aa-~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+..+++| .+.+|... |.-|..+ +..| +.+|.+ ++++.+......|++.++.+|++.+
T Consensus 161 ~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v 226 (357)
T 2b5w_A 161 HAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV 226 (357)
T ss_dssp HHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred hcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence 3345666 66566555 9999999 9999 899997 6665544322237777889999765
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.27 E-value=2.3 Score=36.85 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+++++..+++|.+.+|... |.-|..++..|+.+|.+++++.... .+++.++.+|++.++
T Consensus 170 ~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~---~~~~~~~~lGa~~v~ 228 (360)
T 1piw_A 170 SPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSS---RKREDAMKMGADHYI 228 (360)
T ss_dssp HHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSS---TTHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH---HHHHHHHHcCCCEEE
Confidence 4444567888866555555 9999999999999999855554332 456666778886543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.19 E-value=1.7 Score=37.18 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHcCCCCCCC-cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~-~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++..+++|. +.+|...+|.-|..++..|+.+|.+++++.... .|++.++.+|++.++
T Consensus 142 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~---~~~~~~~~lGa~~v~ 200 (330)
T 1tt7_A 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVI 200 (330)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEE
T ss_pred HHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH---HHHHHHHHcCCcEEE
Confidence 4456678874 666666679999999999999999866665543 456667788987543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=86.09 E-value=2.3 Score=35.83 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=41.0
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+ +++|.+.+|...+|.-|.+++..++.+|.+++++... +.+++.++.+|++.+
T Consensus 120 ~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~~ga~~~ 174 (302)
T 1iz0_A 120 RAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEA 174 (302)
T ss_dssp HTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEE
T ss_pred Hhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhcCCCEE
Confidence 356 8888776677677999999999999999876665442 355666677888644
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.07 E-value=3.4 Score=35.88 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=41.6
Q ss_pred cCCCC--C-------CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 15 KGLIT--P-------GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 15 ~g~l~--~-------g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+..++ | |.+.+|... |.-|.+++..++.+|.+++++........+++.++.+|++.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v 231 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY 231 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence 56677 7 866666665 999999999999999976666543223356777788888765
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=85.55 E-value=5 Score=34.41 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+++|.+.+|. .+|.-|.+.+..|+.+ |.+++++ ..++.|++.++.+|++.++.
T Consensus 168 ~~~~g~~vlv~-GaG~vG~~a~qla~~~g~~~Vi~~---~~~~~~~~~~~~lGa~~~i~ 222 (345)
T 3jv7_A 168 LLGPGSTAVVI-GVGGLGHVGIQILRAVSAARVIAV---DLDDDRLALAREVGADAAVK 222 (345)
T ss_dssp GCCTTCEEEEE-CCSHHHHHHHHHHHHHCCCEEEEE---ESCHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE---cCCHHHHHHHHHcCCCEEEc
Confidence 67888664554 5699999999999998 6665554 23568888999999876544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.44 E-value=14 Score=30.42 Aligned_cols=73 Identities=16% Similarity=0.075 Sum_probs=44.2
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++--|+++|..-.+.|.++++. ..+.. ....+.++..|.+++.+... .+.++..+...+..++.
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~-~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILN-DIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEC-CSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 4477888899999999999998888876553 22111 12344556677777665421 23334444445554544
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=85.42 E-value=5.9 Score=34.55 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHc-CC-CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEE
Q 023801 3 RIGYSMISDAEAK-GL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 50 (277)
Q Consensus 3 R~a~~~v~~a~~~-g~-l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~v 50 (277)
|++++.++.+++. |. --+| ++|+....||-|+.+|..++.+|.++++
T Consensus 155 ~Gv~~~~~~~~~~~G~~~L~G-ktV~I~G~GnVG~~~A~~l~~~GakVvv 203 (355)
T 1c1d_A 155 VGVFEAMKATVAHRGLGSLDG-LTVLVQGLGAVGGSLASLAAEAGAQLLV 203 (355)
T ss_dssp HHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCC-CEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 5667777777653 43 2345 5688889999999999999999988773
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=85.28 E-value=2.1 Score=36.37 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=42.6
Q ss_pred HcCCCCCCC-cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~-~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
++..++|+. +.+|...+|.-|.+++..|+.+|.+++++.+. +.|++.++.+|++.++.
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~---~~~~~~~~~lGa~~vi~ 197 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGR---ESTHGYLKSLGANRILS 197 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---GGGHHHHHHHTCSEEEE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCCEEEe
Confidence 444466632 55666667999999999999999987776543 46788888899976553
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=85.23 E-value=11 Score=31.15 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=46.1
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++--|+++|..-.+.|.+++++-.... -....+.++..|.+++.+.. -.+.++..+...+..++.
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 336789999999999999998899988766532211 11234556777887765532 124444444555555554
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=85.21 E-value=5.1 Score=34.18 Aligned_cols=62 Identities=21% Similarity=0.098 Sum_probs=44.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHH----HcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILR----AFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~----~~Ga~v~~~~ 75 (277)
+.|.+++|.+..++.=.+|.++|++.+++++|++++++-|++- ++.-+..++ ..|+.+..+.
T Consensus 139 ~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 206 (307)
T 3tpf_A 139 WNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY 206 (307)
T ss_dssp TTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4676665645444444589999999999999999999999864 333333333 6799888876
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=84.99 E-value=4.2 Score=35.31 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+...+++|.+.+|. .+|.-|..++..|+.+|..-++.+. .++.|++.++.+|++.+
T Consensus 184 ~~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~v 240 (373)
T 1p0f_A 184 VNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVG--THKDKFPKAIELGATEC 240 (373)
T ss_dssp HTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHTTCSEE
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEE
Confidence 356778898665555 5799999999999999984333332 23467777888998644
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=84.88 E-value=11 Score=28.73 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=60.9
Q ss_pred EEEeeCCchHHHHHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEecCC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 102 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 102 (277)
+++....|..|..+|...... |.+++++-. ++.+...++..|.+++..+.. + .
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~~-~-~--------------------- 94 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDAT-D-P--------------------- 94 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCTT-C-H---------------------
T ss_pred cEEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCCC-C-H---------------------
Confidence 466667899999999999888 998887733 446666666667665544321 0 0
Q ss_pred CCCCcchhhhhhchHHHHHhhh--CCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 103 FENPANPKIHYETTGPELWKGS--GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 103 ~~~~~~~~~g~~t~~~Ei~~Q~--~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
|.+++. ....|.||++++.-....-+...++..++..+|+..
T Consensus 95 ----------------~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 95 ----------------DFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ----------------HHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ----------------HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence 111111 135788888887755555555566666767777654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=5.1 Score=34.83 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCC-eEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl-~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+...+++|.+.+|. .+|.-|..++..|+.+|. +++++.. ++.|++.++.+|++.+
T Consensus 188 ~~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~v 244 (376)
T 1e3i_A 188 INTAKVTPGSTCAVF-GLGCVGLSAIIGCKIAGASRIIAIDI---NGEKFPKAKALGATDC 244 (376)
T ss_dssp HTTSCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHTTCSEE
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCcEE
Confidence 356778898665555 479999999999999998 4444422 3467777888998644
|
| >1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=84.63 E-value=3.4 Score=32.75 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe-------C--CCCCHHHHHHHHHcCCEEEEe
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-------P--ASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv-------p--~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.....+.+|.+.|- + ..||.+|+|.++..++-.. -| +.++|. | ...++..++.++..|.+|+..
T Consensus 39 tl~la~era~e~~I-k---~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 111 (206)
T 1t57_A 39 VLELVGERADQLGI-R---NFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAG 111 (206)
T ss_dssp HHHHHHHHHHHHTC-C---EEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEECC
T ss_pred HHHHHHHHHHHcCC-C---EEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEe
Confidence 44556777888774 2 4445556698886665532 34 777765 3 245789999999999999887
Q ss_pred CC
Q 023801 75 DP 76 (277)
Q Consensus 75 ~~ 76 (277)
..
T Consensus 112 tH 113 (206)
T 1t57_A 112 SH 113 (206)
T ss_dssp SC
T ss_pred ec
Confidence 64
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.68 E-value=4.1 Score=35.46 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=41.6
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++++..+++|.+.+|. .+|.-|..++..|+.+|.+++++.. ++.+++.++.+|++.++
T Consensus 185 ~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~Vi~~~~---~~~~~~~a~~lGa~~vi 243 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVV 243 (369)
T ss_dssp HHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEE
T ss_pred HHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEe
Confidence 34444567888665555 5688999999999999998555443 34567777788987554
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=83.14 E-value=4.8 Score=35.00 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+.+.+++|.+.+|.. +|.-|..++..|+.+|.+-++.+. .++.|++.++.+|++.+
T Consensus 185 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~v 240 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARIIGVD--INKDKFAKAKEVGATEC 240 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCceE
Confidence 567788986655554 799999999999999984333332 23466777788898643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.88 E-value=5.2 Score=34.75 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+...+++|.+.+|.. +|.-|..++..|+.+|.+ ++++. .++.|++.++.+|++.+
T Consensus 186 ~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi~~~---~~~~~~~~~~~lGa~~v 241 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVD---LNPDKFEKAKVFGATDF 241 (374)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC---SCGGGHHHHHHTTCCEE
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEc---CCHHHHHHHHHhCCceE
Confidence 567788986655554 799999999999999984 44442 24467777888998644
|
| >3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} | Back alignment and structure |
|---|
Probab=82.01 E-value=19 Score=29.27 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.2
Q ss_pred CCCCEEEEecCCchhHHHHHHHHhhcC----CCcEEEEEe
Q 023801 126 GRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 161 (277)
Q Consensus 126 ~~~d~iv~pvG~Gg~~aGi~~~~~~~~----~~~~vigV~ 161 (277)
+.||+|||. +.....|+..++++.+ .++.|+|.+
T Consensus 191 ~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 191 QPPTAIMAT--DDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp SCCSEEEES--SHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCcEEEEc--ChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 468999976 5667779999999876 356788875
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=80.76 E-value=7.7 Score=33.10 Aligned_cols=60 Identities=23% Similarity=0.115 Sum_probs=46.2
Q ss_pred HcCCCCCCCcEEEeeCC---chHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIEPTS---GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSs---GN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.|.++ | .+|+-... +|.++|++.+++++|++++++-|++- ++.-+..++..|+++..+.
T Consensus 149 ~~g~l~-g-l~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 213 (308)
T 1ml4_A 149 EFGRID-G-LKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETT 213 (308)
T ss_dssp HSSCSS-S-EEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEES
T ss_pred HhCCCC-C-eEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 457654 4 45666666 58999999999999999999999854 4445666778899987776
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.55 E-value=12 Score=30.56 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCcEEEeeCCch--HHHHHHHHHHHCCCeEEEEeCCCCCHHH-HHHHHHcC---CEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGN--TGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFG---AELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN--~g~a~A~aa~~~Gl~~~vvvp~~~~~~~-~~~~~~~G---a~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..+|+ -|+++|..-.+.|.++++.-........ .+.++..| +..+.+|- .+.++..+..++..++.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDV-QSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCT-TCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccC-CCHHHHHHHHHHHHHHh
Confidence 336677765553 6777787788888887665443222222 23333333 23334443 23344444444444443
|
| >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* | Back alignment and structure |
|---|
Probab=80.54 E-value=24 Score=29.52 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=28.9
Q ss_pred hHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEEEEe
Q 023801 116 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYGIE 161 (277)
Q Consensus 116 ~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vigV~ 161 (277)
...+++++ .+.||+|||. +.....|+..++++.+ .++.|+|.+
T Consensus 224 ~~~~~l~~-~~~~~ai~~~--nd~~A~g~~~al~~~g~~di~vvg~D 267 (342)
T 1jx6_A 224 AAKASLAK-HPDVDFIYAC--STDVALGAVDALAELGREDIMINGWG 267 (342)
T ss_dssp HHHHHHHH-CCCCSEEEES--SHHHHHHHHHHHHHHTCTTSEEBCSB
T ss_pred HHHHHHHh-CCCccEEEEC--CChhHHHHHHHHHHcCCCCcEEEEeC
Confidence 33455554 3569999975 5667789999998876 355665554
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=80.51 E-value=5.2 Score=34.69 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=39.9
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCe-EEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~-~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
+...+++|.+.+|.. +|.-|..++..|+.+|.+ ++++.. ++.|++.++.+|++.+
T Consensus 184 ~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~v 239 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRIIGVDI---NKDKFARAKEFGATEC 239 (373)
T ss_dssp TTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCceE
Confidence 567788986655554 699999999999999984 444422 3466777788888643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=80.40 E-value=6.2 Score=33.78 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=37.5
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHC--CCeEEEEeCCCCCHHHHHHHHHcCCEEE
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELV 72 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~--Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~ 72 (277)
.+ +|.+.+|.. .|.-|..++..|+.+ |.+++++. .++.|++.++.+|++.+
T Consensus 168 ~~-~g~~VlV~G-aG~vG~~aiqlak~~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~v 220 (344)
T 2h6e_A 168 KF-AEPVVIVNG-IGGLAVYTIQILKALMKNITIVGIS---RSKKHRDFALELGADYV 220 (344)
T ss_dssp TC-SSCEEEEEC-CSHHHHHHHHHHHHHCTTCEEEEEC---SCHHHHHHHHHHTCSEE
T ss_pred CC-CCCEEEEEC-CCHHHHHHHHHHHHhcCCCEEEEEe---CCHHHHHHHHHhCCCEE
Confidence 56 786655555 499999999999999 98744442 25678888888998654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.29 E-value=7.4 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.7
Q ss_pred HcCCCC-----CCCcEEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 14 AKGLIT-----PGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 14 ~~g~l~-----~g~~~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+...++ +|.+.+|...+|.-|.+++..|+. .|.+++++.+ ++.|++.++.+|++.++
T Consensus 160 ~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~---~~~~~~~~~~lGad~vi 222 (363)
T 4dvj_A 160 DRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS---RPETQEWVKSLGAHHVI 222 (363)
T ss_dssp TTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHTTCSEEE
T ss_pred HhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 556666 775555555699999999999997 5877666532 45788888889987554
|
| >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=80.06 E-value=23 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCCEEEEecCCchhHHHHHHHHhhcC----CCcEEEEEe
Q 023801 126 GRIDALVSGIGTGGTITGAGKFLKEKN----PNIKLYGIE 161 (277)
Q Consensus 126 ~~~d~iv~pvG~Gg~~aGi~~~~~~~~----~~~~vigV~ 161 (277)
+.||+||| .+...+.|+..++++.+ .++.|+|++
T Consensus 185 ~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 185 DRPTALLT--SSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp CCCSEEEE--SSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 56999997 45667789999999876 367888886
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.02 E-value=7.7 Score=28.20 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=36.0
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+++....|..|.++|......|.+++++-. .+.+.+.++..|.+++..+
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~---~~~~~~~~~~~~~~~~~gd 56 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDK---SKEKIELLEDEGFDAVIAD 56 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEC---CHHHHHHHHHCCCcEEECC
Confidence 366677799999999999999998887743 4566666666666555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 277 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 2e-88 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 4e-74 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 4e-66 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 3e-62 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 6e-61 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 8e-61 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 3e-53 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 5e-52 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 3e-33 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 3e-27 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 5e-27 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 4e-25 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 4e-23 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-22 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 2e-21 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 4e-18 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 1e-15 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 2e-15 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 3e-13 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 264 bits (674), Expect = 2e-88
Identities = 227/275 (82%), Positives = 252/275 (91%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RIG+SMISDAE KGLI PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRI
Sbjct: 46 RIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 105
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
IL AFG ELVLTDPAKGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WK
Sbjct: 106 ILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWK 165
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
G+GG+ID VSGIGTGGTITGAGK+LKE+N N+KLYG+EP ES +LSGGKPGPHKIQGIG
Sbjct: 166 GTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIG 225
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
AGF+P VL V++IDEVVQVSSDE+I+ A+ LALKEGL VGISSG AAAAAI++A+RPENA
Sbjct: 226 AGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENA 285
Query: 243 GKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277
GKL V IFPSFGERYLS+VLF++ RKEAE+MTFEA
Sbjct: 286 GKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 226 bits (577), Expect = 4e-74
Identities = 134/260 (51%), Positives = 179/260 (68%), Gaps = 6/260 (2%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R MI DAE +GL+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR
Sbjct: 39 RPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRK 95
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+L+ GAELVLT GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K
Sbjct: 96 VLKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILK 154
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKLYGIEPTESPVLSGGKPGPHKIQGI 181
+IDA V+G+GTGGTI+G G+ LK N +K+ +EP +SPVLSGG+PG H IQGI
Sbjct: 155 QMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGI 214
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
GAGFVP +L+ ++IDEV+ V +EA E A+ LA KEGL VGISSG AAA+++A++
Sbjct: 215 GAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLG- 273
Query: 242 AGKLIVVIFPSFGERYLSSV 261
+V + P ERYLS +
Sbjct: 274 PDARVVTVAPDHAERYLSIL 293
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 206 bits (525), Expect = 4e-66
Identities = 147/270 (54%), Positives = 190/270 (70%), Gaps = 9/270 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +M+ AE G +T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+
Sbjct: 42 CRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERK 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPEL 120
+L G LVLT+ AKGMKGA+ KAEEI+A P+ ML+QFENPANP+IH ETTGPE+
Sbjct: 101 RLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI 160
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLYGIEPTESPVLSGGKPG----- 174
WK + G++D +V+G+GTGG+ITG + +K I +EP ESPV+S G
Sbjct: 161 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP 220
Query: 175 -PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAI 233
PHKIQGIGAGF+P L+++IID V V SD A+ TA+ L +EG+ GISSG A AAA
Sbjct: 221 GPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAAD 280
Query: 234 EIAKRPENAGKLIVVIFPSFGERYLSSVLF 263
+AK PE A KLIVVI PS ERYLS+ LF
Sbjct: 281 RLAKLPEFADKLIVVILPSASERYLSTALF 310
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 196 bits (498), Expect = 3e-62
Identities = 136/262 (51%), Positives = 188/262 (71%), Gaps = 3/262 (1%)
Query: 3 RIGYSMISDAEAKGLITPG-ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R + MI DAE +G++ PG V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+
Sbjct: 42 RPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERK 101
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 121
+L+AFGAELVLTDP + M A ++A + + A+M QF+NPAN + HYETTGPEL+
Sbjct: 102 RVLKAFGAELVLTDPERRMLAAREEALRL-KEELGAFMPDQFKNPANVRAHYETTGPELY 160
Query: 122 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGI 181
+ GRIDA V G GTGGTITG G++LKE+ P++K+ +EP S VLSGGK G H QG+
Sbjct: 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGM 220
Query: 182 GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPEN 241
G GF+P L+++++D V+QV ++A A+ LA +EGLF+G+SSGG AA+++A+
Sbjct: 221 GPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LG 279
Query: 242 AGKLIVVIFPSFGERYLSSVLF 263
GK + I P G +YLS+ L+
Sbjct: 280 PGKRVACISPDGGWKYLSTPLY 301
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 193 bits (490), Expect = 6e-61
Identities = 140/262 (53%), Positives = 192/262 (73%), Gaps = 10/262 (3%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
CRIG +MI DAE +G++ PG L+EPT+GNTGI LA++AAA+ Y+L +TMP +MS+ERR
Sbjct: 42 CRIGANMIWDAEKRGVLKPGV-ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERR 100
Query: 62 IILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENPANPKIHYETTGPEL 120
+L+A GA LVLT+ AKGMKGA+QKAEEI+A P +LQQF NPANP+IH +TTGPE+
Sbjct: 101 KLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEI 160
Query: 121 WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLY--GIEPTESPVLSGGK------ 172
W+ + G++D +SG+GTGGT+TG +++K L +EPT+SPV++
Sbjct: 161 WEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIK 220
Query: 173 PGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232
PGPHKIQGIGAGF+PG L++ +ID+VV ++++EAI TA+ L +EG+ GISSG A AAA
Sbjct: 221 PGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAA 280
Query: 233 IEIAKRPENAGKLIVVIFPSFG 254
+++ + K IVVI PS G
Sbjct: 281 LKLQEDESFTNKNIVVILPSSG 302
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 194 bits (493), Expect = 8e-61
Identities = 103/275 (37%), Positives = 156/275 (56%), Gaps = 10/275 (3%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
RI MI DAE G + P +IEPTSGNTGIGLA AA + YR II MP MS E+
Sbjct: 79 RISLRMIEDAERDGTLKP-GDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVD 137
Query: 63 ILRAFGAELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 119
+LRA GAE+V T + V A + + PN+++L Q+ N +NP HY+TT E
Sbjct: 138 VLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADE 197
Query: 120 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGK-----PG 174
+ + G++D LV+ +GTGGTITG + LKEK P ++ G++P S + +
Sbjct: 198 ILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQT 257
Query: 175 PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIE 234
++++GIG F+P VL+ ++D+ + + +EA A++L +EGL G S+G A A++
Sbjct: 258 TYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVK 317
Query: 235 IAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKE 269
A+ + G+ VVI P Y++ L + +
Sbjct: 318 AAQELQ-EGQRCVVILPDSVRNYMTKFLSDRWMLQ 351
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 175 bits (445), Expect = 3e-53
Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 15/262 (5%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +IS + + G S++ + TS N G+ L+ +A YR + +P + ++
Sbjct: 128 RPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKL 184
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ R GA++++ A + + + +K + QF N AN + H T E++
Sbjct: 185 LPRLLGAQVIVDPEAPSTVHLLPRVMKD-SKNEGFVHVNQFYNDANFEAHMRGTAREIFV 243
Query: 123 ---GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ 179
G + + +GT G ++ A +L+ +P+I+ ++P + + G + +
Sbjct: 244 QSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGML 303
Query: 180 GIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239
I ++I + +V+ +EA+E +A +GL +G S G A A + A
Sbjct: 304 WINM--------LDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEG 355
Query: 240 ENAGKLIVVIFPSFGERYLSSV 261
+ VV+ P G +YLS V
Sbjct: 356 DLEPGDYVVVVPDTGFKYLSLV 377
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 169 bits (429), Expect = 5e-52
Identities = 111/261 (42%), Positives = 163/261 (62%), Gaps = 11/261 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R SMI +AE +G I PG+ + IE TSGNTGI LA +AA K YR+ + MP +MS ERR
Sbjct: 42 RAALSMIVEAEKRGEIKPGDVL-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRA 100
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+RA+GAEL+L +GM+GA + +A +L QF NP NP HY TTGPE+W+
Sbjct: 101 AMRAYGAELILVTKEQGMEGA-RDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ 159
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQGIG 182
+GGRI VS +GT GTITG +F++E++ + + G++P E + G + P
Sbjct: 160 QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPT------ 213
Query: 183 AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENA 242
++PG+ +++DEV+ + +A T + LA++EG+F G+SSGGA A A+ +AK N
Sbjct: 214 -EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAK--ANP 270
Query: 243 GKLIVVIFPSFGERYLSSVLF 263
++V I G+RYLS+ +F
Sbjct: 271 DAVVVAIICDRGDRYLSTGVF 291
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 121 bits (305), Expect = 3e-33
Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 26/274 (9%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R Y+M++ + +I ++GN G+AF +A + +I MP + + +
Sbjct: 60 RGAYAMMAGLTEEQ----KAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVD 115
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+R FG E++L A L++ + F++P I + T
Sbjct: 116 AVRGFGGEVLLHGANFDEAKAKA---IELSQQQGFTWVPPFDHP--MVIAGQGTLALELL 170
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKIQ--- 179
+D + +G GG G +K+ P IK+ +E +S L H +
Sbjct: 171 QQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPR 230
Query: 180 ------GIGAGFVPGV---LEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
G+ + L +D+++ V SD K L S A A
Sbjct: 231 VGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALA 290
Query: 231 AAIEIAKRPENAGKLIVVIFP-----SFGERYLS 259
+ G+ + I G RY+S
Sbjct: 291 GMKKYIALHNIRGERLAHILSGANVNFHGLRYVS 324
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 105 bits (263), Expect = 3e-27
Identities = 41/272 (15%), Positives = 82/272 (30%), Gaps = 27/272 (9%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R +I +A A+G T V I N +A +AA + ++ ++
Sbjct: 52 TRKLEYLIPEALAQGCDTL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDA 108
Query: 62 IILRAFGAEL----------VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKI 111
+ R ++ V G + + + A E + +P
Sbjct: 109 VYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLG 168
Query: 112 HYETTGPELW-----KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP 166
G G + D +V TG T G ++ G++ + P
Sbjct: 169 GLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKP 228
Query: 167 VLSGGKPGPHKIQGIGAGFVPG-------VLEVNIIDEVVQVSSDEAIETAKLLALKEGL 219
+ + Q + VL+ + ++ +E +L A EG+
Sbjct: 229 AQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGM 288
Query: 220 FVG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 249
+ G + IE+ + E G ++
Sbjct: 289 LTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 104 bits (260), Expect = 5e-27
Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 23/259 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R + +S ++ ++ +SGN +A A I MP +
Sbjct: 54 RGALNALSQLNEA----QRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVA 109
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+ +G ++++ D K + + K +++ ++ +++P + T EL++
Sbjct: 110 ATKGYGGQVIMYDRYKDDREKMAKE---ISEREGLTIIPPYDHP-HVLAGQGTAAKELFE 165
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS------------G 170
G +DAL +G GG ++G+ + PN ++YG+EP
Sbjct: 166 -EVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDT 224
Query: 171 GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
K Q G + +D+++ VS +E I+ K A + + V + + A
Sbjct: 225 PKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFA 284
Query: 231 AAIEIAKRPENAGKLIVVI 249
AA + ++ + K I +I
Sbjct: 285 AARAMKEKLK--NKRIGII 301
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 100 bits (250), Expect = 4e-25
Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 45/283 (15%)
Query: 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDP-AKG 79
++ E +G G+ A A ++ I M A ++ GA ++ + ++
Sbjct: 101 LIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160
Query: 80 MKGAVQKAEEILAKTP------NAYMLQQFENPANPKIHYETTGPEL---WKGSGGRIDA 130
+K A+ +A T ++ P + G E + G++
Sbjct: 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPD 220
Query: 131 LVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSG--------GKPGP------- 175
++ GG+ + + +KL G+E + SG G+ G
Sbjct: 221 VIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSY 280
Query: 176 ----------------HKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGL 219
+ G G L+ E V V+ +EA++ L+ EG+
Sbjct: 281 FLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGI 340
Query: 220 FVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVL 262
+ S A A A+++AK + ++I+V G++ L VL
Sbjct: 341 IPALESAHAVAYAMKLAKE-MSRDEIIIVNLSGRGDKDLDIVL 382
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 94.4 bits (233), Expect = 4e-23
Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 12/255 (4%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R ++ DA +KG + + N A I+ + L+
Sbjct: 56 RKLEYLLGDALSKGADVV---ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNY 112
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEIL----AKTPNAYMLQQFENPANPKIHYETTGP 118
+L AK ++ AEEI + Y++ + Y
Sbjct: 113 LLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG 172
Query: 119 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPGPHKI 178
E+ S + D++V G+GGT+ G L N +I+ GI + K
Sbjct: 173 EIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIK 232
Query: 179 QGI---GAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVG-ISSGGAAAAAIE 234
+ G + + E + + + +EG+ + + +G A ++
Sbjct: 233 EAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVD 292
Query: 235 IAKRPENAGKLIVVI 249
+A++ E G+ I+ I
Sbjct: 293 LARKGE-LGEKILFI 306
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 93.2 bits (230), Expect = 1e-22
Identities = 34/273 (12%), Positives = 72/273 (26%), Gaps = 28/273 (10%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR 61
R ++ D V I N +A +AA + ++ + +
Sbjct: 52 LRKLEYIVPDIVEGDYTHL---VSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEA 108
Query: 62 IILRAFGAELVLTDPAKG-------------MKGAVQKAEEILAKTPNAYMLQQFENPAN 108
+ G M+ + A + L + +
Sbjct: 109 EKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEH 168
Query: 109 PKIH-----YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPT 163
+ G + D +V TG T G + + + I+ +
Sbjct: 169 KYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDAS 228
Query: 164 ES-----PVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEG 218
+ K+ G+ F L+ V ++ IE + A +EG
Sbjct: 229 FTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEG 288
Query: 219 LFVG-ISSGGAAAAAIEIAKRPE-NAGKLIVVI 249
+ + G + I + K G ++ +
Sbjct: 289 VLTDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 89.7 bits (221), Expect = 2e-21
Identities = 47/262 (17%), Positives = 96/262 (36%), Gaps = 28/262 (10%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R S E L+ +SGN G+A+ A + ++ MP S ++
Sbjct: 52 RGALSKALALE-------NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKA 104
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW- 121
RA+GAE+V + V +A + + ++ F++P L
Sbjct: 105 CARAYGAEVVDRGVTAKNREEVARALQ---EETGYALIHPFDDPLVIAGQGTAGLELLAQ 161
Query: 122 -KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESP-------------V 167
G A+++ +G GG + G +K +P + G+EP + +
Sbjct: 162 AGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRL 221
Query: 168 LSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227
+ + ++ + G + +D ++ VS + +E +LL + V +
Sbjct: 222 EAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGAL 281
Query: 228 AAAAAIEIAKRPENAGKLIVVI 249
AA +E R + + ++
Sbjct: 282 PLAAVLEHGARL---PQTLALL 300
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 81.1 bits (199), Expect = 4e-18
Identities = 50/292 (17%), Positives = 86/292 (29%), Gaps = 48/292 (16%)
Query: 2 CRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SL 58
A+ G E +G G+ A +A + I M A
Sbjct: 87 TNQVLGQALLAKRMGKSEII----AETGAGQHGVASALASALLGLKCRIYMGAKDVERQS 142
Query: 59 ERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKTP------NAYMLQQFENPANPKI 111
+R GAE++ + +K A +A + + P +
Sbjct: 143 PNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVRE 202
Query: 112 HYETTGPEL---WKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVL 168
G E GR+ V GG+ + ++ L G+EP +
Sbjct: 203 FQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIE 262
Query: 169 SG--------GKPG-----------------------PHKIQGIGAGFVPGVLEVNIIDE 197
+G G+ G + G L +
Sbjct: 263 TGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRAD 322
Query: 198 VVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVI 249
V ++ DEA+E K L EG+ + S A A A+++ + +L+VV
Sbjct: 323 YVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVN 374
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 73.9 bits (180), Expect = 1e-15
Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 32/301 (10%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
++S + + ++G+T L+ A+ I+ +PA+
Sbjct: 156 LGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SMAQ 214
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
+++ + G ++ EI L N + L +
Sbjct: 215 LVQPIANGAFVLSIDTDFDGCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQ 272
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKN--------PNIKLYGIEPTESPVLSG---- 170
D ++ G G I K K P + L
Sbjct: 273 FDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGW 332
Query: 171 ----GKPGPHKIQGIGAGFVPGVLE-----VNIIDEVVQVSSDEAIETAKLLALKEGLFV 221
P ++ + + +V+ +++E + A A G+F+
Sbjct: 333 KDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFI 392
Query: 222 GISSGGAAAAAIEIAKRPE-NAGKLIVVI-------FPSFGERYLSSVLFESVRKEAESM 273
+G A A ++ + VV+ F Y S+ + + + +
Sbjct: 393 CPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIPDMACRFSNPP 452
Query: 274 T 274
Sbjct: 453 V 453
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 72.8 bits (177), Expect = 2e-15
Identities = 38/274 (13%), Positives = 76/274 (27%), Gaps = 24/274 (8%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +S A G ++GNT A AA I+ +PA ++
Sbjct: 63 RGMTLAVSKAVEGGAQAV-----ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKV 117
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
++ + + + +T E+
Sbjct: 118 AQSLVHGARIVQVEGNFDDALRLTQKLT----EAFPVALVNSVNPHRLEGQKTLAFEVVD 173
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKLYGIEPTESPVLSGGKPGPH 176
G +G G IT K ++ G + + L G+P
Sbjct: 174 ELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233
Query: 177 K--------IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228
I + + + V+ +E + + LA +EG+F +S A
Sbjct: 234 PETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAA 293
Query: 229 AAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSSV 261
A ++ + +V+ G + ++
Sbjct: 294 MAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-13
Identities = 35/266 (13%), Positives = 68/266 (25%), Gaps = 26/266 (9%)
Query: 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI 62
R +G + ++GN G+ A+ A I +P +
Sbjct: 40 RGIGHFCKRWAKQGCAH-----FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIE 94
Query: 63 ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 122
L+ GA + + A+ + P + F++P + H
Sbjct: 95 RLKNEGATCKVVGELLDEAF--ELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKET 152
Query: 123 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI------------EPTESPVLSG 170
+S G G + ++ + + + L
Sbjct: 153 LWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPK 212
Query: 171 GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAA 230
+ G L +S EA+ + E + V + G A A
Sbjct: 213 ITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALA 272
Query: 231 AAI-------EIAKRPENAGKLIVVI 249
A ++ +VVI
Sbjct: 273 AVYSHVIQKLQLEGNLRTPLPSLVVI 298
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 277 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 100.0 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 100.0 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 99.98 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 99.16 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.74 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.57 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.45 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.43 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.41 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.33 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.16 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.81 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.72 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.69 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.67 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.64 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.6 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.56 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.3 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.13 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.08 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.01 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.78 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.51 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.88 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 93.34 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 93.28 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.25 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.87 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.29 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.27 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.16 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.14 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.01 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 89.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.62 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 88.42 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 87.71 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 86.3 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.15 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.74 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 85.54 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 85.49 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.23 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.96 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 84.26 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 83.5 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.09 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 82.58 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.46 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.39 | |
| d1t57a_ | 186 | Hypothetical protein MTH1675 {Methanobacterium the | 82.05 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 81.78 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 81.63 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.42 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.82 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 80.76 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 80.51 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.31 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.3e-60 Score=416.68 Aligned_cols=277 Identities=82% Similarity=1.259 Sum_probs=255.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|+++|.++++.++||++||||||+|+|++|+.+|++|++|+|+.+++.|+++++.|||+|+.++...+.
T Consensus 44 KdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~ 123 (320)
T d1z7wa1 44 KDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGM 123 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccc
Confidence 79999999999999999988878899999999999999999999999999999999999999999999999999864333
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
......+.+...+.++++++++++|+.|++.||+|+++||++|+.+.||+||+|+|+||+++|++++|+..+|.+++++|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igv 203 (320)
T d1z7wa1 124 KGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV 203 (320)
T ss_dssp HHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccchhHHHHHHhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecc
Confidence 34444455555566789999999999988899999999999999778999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||.+++.+..+.+.+..+++++.+.+|+.+....+|+++.|+|+|++.+++.|+++||+++||+||++++++++++++..
T Consensus 204 e~~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~a~~~~ 283 (320)
T d1z7wa1 204 EPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPE 283 (320)
T ss_dssp EEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHTSGG
T ss_pred cccCCccccCCCCCCceeeeccCCcCcchhhhhhcceeeccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHHHhhcc
Confidence 99999988877888888999999888888889999999999999999999999999999999999999999999887755
Q ss_pred CCCCeEEEEecCCCCCCcchhccHHHHHhhhccccCC
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLFESVRKEAESMTFEA 277 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~~~~~~ 277 (277)
.++++||+|+||+|+||+|+.+|++|+++.+.+++|+
T Consensus 284 ~~~~~VV~i~~d~G~kYlst~~~d~~~~e~~~~~~~~ 320 (320)
T d1z7wa1 284 NAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFEA 320 (320)
T ss_dssp GTTCEEEEEECBBGGGGTTSGGGHHHHHHHHTCCCCC
T ss_pred CCCCEEEEEECCCchhhcccccCHHHHHHHhcCCCCC
Confidence 6889999999999999999999999999999999986
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-55 Score=384.22 Aligned_cols=256 Identities=53% Similarity=0.804 Sum_probs=234.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.+|+++|.++++ |+++|+||||+|+|++|+.+|++|+||+|+++++.|+++++.+||+|+.++...++
T Consensus 37 K~Rga~~~i~~a~~~g~~~~~---vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 113 (293)
T d1o58a_ 37 KDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGM 113 (293)
T ss_dssp THHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCcc---eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEEecCcchh
Confidence 899999999999999987754 99999999999999999999999999999999999999999999999999864445
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCC-CcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNP-NIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~-~~~vig 159 (277)
......+.+++++. +++|++||+|+.+++.||.+++.||++|++++||+||+|+|+||+++|++.+|++..+ .+||++
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~ 192 (293)
T d1o58a_ 114 KGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVA 192 (293)
T ss_dssp HHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEE
T ss_pred hHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhhhhhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEE
Confidence 55666777777776 7899999999988788999999999999987899999999999999999999998654 599999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||++++++..+.+.++.+++++.+..|+.+....+|+++.|+|+|++++++.|+++|||++||+||++++++++++++.
T Consensus 193 vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~a~~~ 272 (293)
T d1o58a_ 193 VEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKL 272 (293)
T ss_dssp EEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTS
T ss_pred EecCCCccccCCCcCCcccccCCCCccchhhhhhhCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHHHHHc
Confidence 99999999988888888899999988888888889999999999999999999999999999999999999999988764
Q ss_pred CCCCCeEEEEecCCCCCCcchh
Q 023801 240 ENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
.++++||+|+|++|+||+|++
T Consensus 273 -~~~~~Vv~i~~d~g~kYls~~ 293 (293)
T d1o58a_ 273 -GPDARVVTVAPDHAERYLSIL 293 (293)
T ss_dssp -CTTCCEEEEECBBGGGCTTTC
T ss_pred -CCcCEEEEEECCCCcccccCC
Confidence 378899999999999999963
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-54 Score=385.67 Aligned_cols=270 Identities=39% Similarity=0.617 Sum_probs=235.4
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|+++|.++++ ++||++||||||+|+|++|+++|++|+||||..+++.|++.|+.|||+|+.++.....
T Consensus 77 KdRga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~ 155 (355)
T d1jbqa_ 77 KDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 155 (355)
T ss_dssp HHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC----
T ss_pred HHHHHHHHHHHHHHcCCcccC-ceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccc
Confidence 799999999999999998887 5799999999999999999999999999999999999999999999999999753322
Q ss_pred H---HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 K---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
. +......++..+.+..++.+++.++.+.++||+|+++||++|++++||+||+|+|+||+++|++.+|++.++.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~ki 235 (355)
T d1jbqa_ 156 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRI 235 (355)
T ss_dssp ---CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEE
T ss_pred hhhhhhhhHHHHHHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceE
Confidence 2 2344445555555578888999988888899999999999999878999999999999999999999999999999
Q ss_pred EEEecCCCCccCC-----CCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 158 YGIEPTESPVLSG-----GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 158 igV~~~~~~~~~~-----~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
++|+|++++.+.. .......+++++.+..+.......+++++.|+|+|++.+++.|++++||++||+||++++++
T Consensus 236 i~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~ 315 (355)
T d1jbqa_ 236 IGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVA 315 (355)
T ss_dssp EEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHH
T ss_pred EeecccCCcccccccccccccccccccccccccchhhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHH
Confidence 9999999875532 22233456788877777777788899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHHhhhc
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRKEAES 272 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~~~~~ 272 (277)
++++++. .++++||+|+||+|+||+|++++++|+.....
T Consensus 316 l~~~~~~-~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~ 354 (355)
T d1jbqa_ 316 VKAAQEL-QEGQRCVVILPDSVRNYMTKFLSDRWMLQKGF 354 (355)
T ss_dssp HHHGGGC-CTTCEEEEEECBBGGGGTTTTTCHHHHHHTTC
T ss_pred HHHHHhc-CCcCEEEEEECCCCccccccccCHHHHHHCCC
Confidence 9998764 37899999999999999999999999876553
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.4e-54 Score=377.26 Aligned_cols=261 Identities=52% Similarity=0.866 Sum_probs=238.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCC-cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~-~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||+|.++|.+|+++|.++++. ++|+++|+||||.|+|++|+.+|++|++|+|+.+++.|+..++.+|++++.+....+
T Consensus 40 K~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~ 119 (302)
T d1ve1a1 40 KDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERR 119 (302)
T ss_dssp THHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhhhccCcceeEeeecccchheeehhhhhhhcchhcccccc
Confidence 8999999999999999888763 689999999999999999999999999999999999999999999999999987555
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEE
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYG 159 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vig 159 (277)
..+....+.+..++. +++|++||+|+.+++.||+|+++||++|++++||+||+|+|+||+++|++.+|+...|.++||+
T Consensus 120 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iig 198 (302)
T d1ve1a1 120 MLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIA 198 (302)
T ss_dssp HHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEE
T ss_pred hHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHHHHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEE
Confidence 555566666666665 7899999999998788999999999999977899999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcC
Q 023801 160 IEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRP 239 (277)
Q Consensus 160 V~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~ 239 (277)
|||++++.+.........+++++.+..|+.+...+.++.+.|+|+|++++++.|++++||++||+||++++++++++++.
T Consensus 199 ve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~~~~~ 278 (302)
T d1ve1a1 199 VEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVAREL 278 (302)
T ss_dssp EEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHH
T ss_pred EEecccceeeeccccCcccCccCCCcCCchhhhhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHHhHHh
Confidence 99999988877777777788998888888888899999999999999999999999999999999999999999987653
Q ss_pred CCCCCeEEEEecCCCCCCcchhcc
Q 023801 240 ENAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 240 ~~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
.++++||+|+|++|+||+||.+|
T Consensus 279 -~~~~~Vv~i~~g~G~kY~st~~f 301 (302)
T d1ve1a1 279 -GPGKRVACISPDGGWKYLSTPLY 301 (302)
T ss_dssp -CTTCEEEEEECBBSGGGTTSTTT
T ss_pred -CccCeEEEEECCCCchhcChhhc
Confidence 47899999999999999999777
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=1.6e-53 Score=370.34 Aligned_cols=252 Identities=44% Similarity=0.778 Sum_probs=224.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|+++|.+.++ .+||++|+||||+|+|++|+++|++|+||||+++++.|+++|+.|||+|+.++...++
T Consensus 40 K~Rga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~ 118 (292)
T d2bhsa1 40 KDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGM 118 (292)
T ss_dssp HHHHHHHHHHHHHHTTSCCTT-SEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHH
T ss_pred HHHHHHHHHHHHHHhCCcCCC-ceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccch
Confidence 799999999999999998887 6799999999999999999999999999999999999999999999999999875555
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
.++...+.+..++. +.++.+||+|+.++..||.++++||++|+++.||+||+|+|+||+++|+++++++..++++|++|
T Consensus 119 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~V 197 (292)
T d2bhsa1 119 EGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 197 (292)
T ss_dssp HHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEE
T ss_pred HHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEe
Confidence 56666666666665 77899999999988899999999999999778999999999999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCC
Q 023801 161 EPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPE 240 (277)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~ 240 (277)
||++++++...... ..+..++.+.....++++.|+|+|+++++++|+++|||++||+||+++++++++.+.+
T Consensus 198 ep~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~~~~~- 269 (292)
T d2bhsa1 198 QPEEGSSIPGIRRW-------PTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKAN- 269 (292)
T ss_dssp EECTTCCCTTCCCC-------CTTTCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHTC-
T ss_pred cccccccccccccc-------ccccccccccccccceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHHHHHC-
Confidence 99999876533221 1122344556678899999999999999999999999999999999999999998775
Q ss_pred CCCCeEEEEecCCCCCCcchhcc
Q 023801 241 NAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 241 ~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
++++||+|+|++|+||+||.+|
T Consensus 270 -~~~~VV~il~~~G~kYlst~~~ 291 (292)
T d2bhsa1 270 -PDAVVVAIICDRGDRYLSTGVF 291 (292)
T ss_dssp -TTCEEEEEECBBSGGGGGGTCC
T ss_pred -cCCeEEEEECCCCccccccccc
Confidence 6899999999999999999887
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=3.5e-52 Score=364.75 Aligned_cols=262 Identities=56% Similarity=0.895 Sum_probs=229.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|+++|.+.++ ++||++||||||+|+|++|+++|++|+||+|.++++.|+++++.|||+|+.+++..+.
T Consensus 41 K~RgA~~~i~~a~~~g~~~~~-~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~ 119 (310)
T d1y7la1 41 KCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGM 119 (310)
T ss_dssp HHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC-ceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCcccc
Confidence 799999999999999999988 6799999999999999999999999999999999999999999999999999864322
Q ss_pred HHHHHHH-HHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhh-cCCCcEEE
Q 023801 81 KGAVQKA-EEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKLY 158 (277)
Q Consensus 81 ~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~-~~~~~~vi 158 (277)
.+..... ....+...+.+++++++|+.++..||.+++.||++|+++.||+||+|+|+||+++|++.+++. ..+.++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i 199 (310)
T d1y7la1 120 KGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSV 199 (310)
T ss_dssp HHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEE
T ss_pred chhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceec
Confidence 2222222 222233347889999999998778999999999999987899999999999999999999985 68999999
Q ss_pred EEecCCCCccC----C--CCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHH
Q 023801 159 GIEPTESPVLS----G--GKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAA 232 (277)
Q Consensus 159 gV~~~~~~~~~----~--~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~ 232 (277)
+|+|.+++.+. + ....++.+.|++.+..|+.+.....++++.|+|+|++++++.|++++|+++||+||++++++
T Consensus 200 ~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa 279 (310)
T d1y7la1 200 AVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAA 279 (310)
T ss_dssp EEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHH
T ss_pred cccccCchhhhhhhcCCccccCCceeeecccccccHHHhhhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHH
Confidence 99999986543 1 12345567788888888888889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhcc
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
++++++.+.++++||+|+||+|+||+||.+|
T Consensus 280 ~~~a~~~~~~~~~vV~vlcd~g~kY~~t~~~ 310 (310)
T d1y7la1 280 DRLAKLPEFADKLIVVILPSASERYLSTALF 310 (310)
T ss_dssp HHHHTSGGGTTCEEEEEECBBCSSCCCTTTC
T ss_pred HHHHhhccCCcCEEEEEECCCcchhcCCCCC
Confidence 9998776667899999999999999999887
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=2.3e-51 Score=365.89 Aligned_cols=251 Identities=24% Similarity=0.323 Sum_probs=215.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+|.+ .+++| .+||++||||||+|+|++|+.+|++|+||||.++++.|+++++.|||+|+.++...+.
T Consensus 126 KdR~A~~~i~~A~~--~~~~g-~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~ 202 (382)
T d1wkva1 126 KDRPAVEIISRLSR--RVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPST 202 (382)
T ss_dssp THHHHHHHHHHHTT--TSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSS
T ss_pred HHHHHHHHHHHHHh--ccCCC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeecCcchhh
Confidence 89999999999864 46677 4699999999999999999999999999999999999999999999999999865455
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
.+..+.+.+.+++. +++|++||+||.++..||+|++.||++|+. ..+|+||+|+|+||+++|++.++++.+|++||
T Consensus 203 ~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vki 281 (382)
T d1wkva1 203 VHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRA 281 (382)
T ss_dssp GGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHhhhcccc-CccccccccccceeeehhhcchHHHHHHhhcCCCceeEEEEecccccccccceeehhhhCCccce
Confidence 56666666666665 789999999999988999999999999983 36899999999999999999999999999999
Q ss_pred EEEecCCCCccCCCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHh
Q 023801 158 YGIEPTESPVLSGGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAK 237 (277)
Q Consensus 158 igV~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~ 237 (277)
|+|||.+++.+.+. ..++.+..+.. ..+..+++..|+|+|+++++++|+++|||++||+||+++++++++++
T Consensus 282 igVep~~~~~i~g~-------~~i~~g~~~~~-~~d~~~~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~ 353 (382)
T d1wkva1 282 VLVQPAQGDSIPGI-------RRVETGMLWIN-MLDISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKKAA 353 (382)
T ss_dssp EEEEECTTCCCTTC-------CCGGGCCSHHH-HSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHH
T ss_pred eEeccccccccccc-------cccccCccCcc-ccccceEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHHHh
Confidence 99999998765321 12222222111 23456789999999999999999999999999999999999999988
Q ss_pred cCCCCCCeEEEEecCCCCCCcchhcc
Q 023801 238 RPENAGKLIVVIFPSFGERYLSSVLF 263 (277)
Q Consensus 238 ~~~~~~~~vv~i~~~gG~~~~~~~~~ 263 (277)
++..+++++|+|+||+|+||+|++|+
T Consensus 354 ~~~~~~~~vVvIlcD~G~rYlstiyN 379 (382)
T d1wkva1 354 EGDLEPGDYVVVVPDTGFKYLSLVQN 379 (382)
T ss_dssp TTCSCSEEEEEEECBBGGGCHHHHHH
T ss_pred hccCCCCCEEEEECCCCccchHhhcc
Confidence 87767788999999999999999764
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-49 Score=347.26 Aligned_cols=259 Identities=17% Similarity=0.151 Sum_probs=223.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||++.++|.++.++|. ++||++||||||+|+|++|+++|++|+||||+++++.|+++++.+|++|+.+++ ++
T Consensus 38 K~R~a~~~~~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~ 110 (319)
T d1p5ja_ 38 KIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LL 110 (319)
T ss_dssp THHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CH
T ss_pred HHHHHHHHHHHHHHcCC-----CEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceeccccccc--cc
Confidence 89999999999999987 679999999999999999999999999999999999999999999999999985 78
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcC-CCcEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN-PNIKLYG 159 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~-~~~~vig 159 (277)
+++.+.++++++++++++|+++++|+.+ ++||.+++.||++|+++.||++|+|+|+||+++|++.++++.. +.+++++
T Consensus 111 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~~q~~~~~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ 189 (319)
T d1p5ja_ 111 DEAFELAKALAKNNPGWVYIPPFDDPLI-WEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIA 189 (319)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSCCHHH-HHHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hhHHHHHHHHhhccCccccccccccccc-ccccchhhhhhhccccCCCceeeecccCCcchhhhHHHHHHhccCCeeeee
Confidence 8999999999988878899999999988 8999999999999997789999999999999999999999865 7899999
Q ss_pred EecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHH
Q 023801 160 IEPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGG 227 (277)
Q Consensus 160 V~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~ 227 (277)
|+|.+++++. .+++ ..+..++++.+.. ++.+.+++.|..+.|+|+|++++++.|+++|||++||+||+
T Consensus 190 ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~epssa~ 269 (319)
T d1p5ja_ 190 METFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGA 269 (319)
T ss_dssp EEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred cccccccccchhhhccccccccccccccccccccccccccchhhhhccceeeecCHHHHHHHHHHHHHHcCEEEeHHHHH
Confidence 9999997653 1222 2344567765432 23445678899999999999999999999999999999999
Q ss_pred HHHHHHHHH-----hcCC--CCCCeEEEEecCCCCCCcchhccHHHHHh
Q 023801 228 AAAAAIEIA-----KRPE--NAGKLIVVIFPSFGERYLSSVLFESVRKE 269 (277)
Q Consensus 228 alaa~~~~~-----~~~~--~~~~~vv~i~~~gG~~~~~~~~~~~~~~~ 269 (277)
+++++++.+ .+++ .+++++|+++|+|||.|+|+ ++.|.+.
T Consensus 270 ~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~--l~~~~e~ 316 (319)
T d1p5ja_ 270 ALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ--LRALKEQ 316 (319)
T ss_dssp HHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHHH--HHHHHHh
Confidence 999997643 1222 46788999998999988885 3555443
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-49 Score=346.68 Aligned_cols=250 Identities=22% Similarity=0.278 Sum_probs=218.8
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.+++.++.+++. .++|+++|+||||.|+|++|+.+|++|++|+|+.++..|+++|+.+||+|+.++. ++
T Consensus 58 KdRga~~~i~~~~~~~~----~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~ 131 (331)
T d1tdja1 58 KLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NF 131 (331)
T ss_dssp THHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SH
T ss_pred HHHHHHHHHHHHHHhCC----CCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCc--cc
Confidence 89999999999877664 2469999999999999999999999999999999999999999999999999985 67
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
++..+.+.+++++. +++|+++++||.+ +.||.+++.||++|. ++||+||+|+|+||+++|++.+|++.+|++||++|
T Consensus 132 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~v 208 (331)
T d1tdja1 132 DEAKAKAIELSQQQ-GFTWVPPFDHPMV-IAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAV 208 (331)
T ss_dssp HHHHHHHHHHHHHH-CCEECCSSCCHHH-HHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred ccchhhhhhhhhcC-CCccccccCChHH-hhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEe
Confidence 77777888887776 7899999999998 799999999999998 67999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCCC-----CCcccCccCCCCC---ccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGKP-----GPHKIQGIGAGFV---PGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
||++++++. .+++ ..+...++..+.+ ++.+...++|+++.|+|+|++++++.|++++||++||+||++
T Consensus 209 e~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~a 288 (331)
T d1tdja1 209 EAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALA 288 (331)
T ss_dssp EETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHHhhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHH
Confidence 999998663 1222 1233456654432 234567889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
+++++++++++..++++||+|+ ||||.+++.
T Consensus 289 lAal~~~~~~~~~~g~~Vv~vl-tGgnid~~~ 319 (331)
T d1tdja1 289 LAGMKKYIALHNIRGERLAHIL-SGANVNFHG 319 (331)
T ss_dssp HHHHHHHHHHHTCCSCEEEEEC-CCCCCCTTH
T ss_pred HHHHHHHHhhccCCcCeEEEEe-CCCCCCcch
Confidence 9999998887767889999999 889988774
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-47 Score=333.34 Aligned_cols=251 Identities=50% Similarity=0.860 Sum_probs=214.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.+++++|++++| ++++++|+||||+|+|++|+.+|++|++|||..+++.|+.+++.+|++|+.+++. +
T Consensus 41 K~Rga~~~i~~a~~~g~~~~~-~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~--~ 117 (302)
T d1fcja_ 41 KCRIGANMIWDAEKRGVLKPG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGA--K 117 (302)
T ss_dssp HHHHHHHHHHHHHHHTCCCTT-CEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG--G
T ss_pred HHHHHHHHHHHHHHcCCCCCC-ceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccc--c
Confidence 799999999999999999988 5799999999999999999999999999999999999999999999999999963 3
Q ss_pred HHHHHHHH---HHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcE-
Q 023801 81 KGAVQKAE---EILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK- 156 (277)
Q Consensus 81 ~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~- 156 (277)
.+....+. +..++..+.++.++++++.++..||+++++||++|+++.||+||+|+|+||+++|++.+++...+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~ 197 (302)
T d1fcja_ 118 GMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDL 197 (302)
T ss_dssp HHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTC
T ss_pred ccchhhhHHHHHHhhhccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccc
Confidence 33332222 22233336788899999888888999999999999977899999999999999999999999887664
Q ss_pred -EEEEecCCCCccC------CCCCCCcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHH
Q 023801 157 -LYGIEPTESPVLS------GGKPGPHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGAA 229 (277)
Q Consensus 157 -vigV~~~~~~~~~------~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~al 229 (277)
++++++..++.+. ......+.+++++.+..++.++...+|+.+.|+|+|++++++.|++++||++||++|+++
T Consensus 198 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~l 277 (302)
T d1fcja_ 198 ITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAV 277 (302)
T ss_dssp EEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cccccccccchhhhccccccccccCCceecccCCCcCchhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHH
Confidence 5556666654321 112234567889888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCC
Q 023801 230 AAAIEIAKRPENAGKLIVVIFPSFG 254 (277)
Q Consensus 230 aa~~~~~~~~~~~~~~vv~i~~~gG 254 (277)
+++++++++...++++||+|+|++|
T Consensus 278 aaa~~l~~~~~~~~~~vvvilc~~G 302 (302)
T d1fcja_ 278 AAALKLQEDESFTNKNIVVILPSSG 302 (302)
T ss_dssp HHHHHHTTSGGGTTCCEEEEECBCC
T ss_pred HHHHHHHHhcCCCcCeEEEEeCCCC
Confidence 9999987765567899999998887
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=1.6e-48 Score=342.60 Aligned_cols=254 Identities=20% Similarity=0.270 Sum_probs=216.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|.++|.++.+.+. ...|+++|+||||+++|++|+++|++|+||+|.++++.|+++++.+||+|+.+++ .+
T Consensus 52 KdRga~~~~~~~~~~~~----~~~vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~--~~ 125 (318)
T d1v71a1 52 KFRGALNALSQLNEAQR----KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR--YK 125 (318)
T ss_dssp HHHHHHHHHTTCCHHHH----HHCEEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECT--TT
T ss_pred HHHHHHHHHHHhhhccc----cceeeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccC--Cc
Confidence 79999999999876554 1469999999999999999999999999999999999999999999999999985 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGI 160 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV 160 (277)
+++.+.+++++++. +++|++||+||.+ +.||.++++||++|+ +++|+||+|+|+||+++|++.+++..+++++|++|
T Consensus 126 ~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v 202 (318)
T d1v71a1 126 DDREKMAKEISERE-GLTIIPPYDHPHV-LAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGV 202 (318)
T ss_dssp TCHHHHHHHHHHHH-TCBCCCSSSSHHH-HHHHTHHHHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hHHHHHHHHHHHhc-CCEecCCcccccc-ccccchHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecc
Confidence 67788888888876 7899999999887 789999999999999 57999999999999999999999999999999999
Q ss_pred ecCCCCccC----CCC-----CCCcccCccCCCC---CccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHH
Q 023801 161 EPTESPVLS----GGK-----PGPHKIQGIGAGF---VPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISSGGA 228 (277)
Q Consensus 161 ~~~~~~~~~----~~~-----~~~~~~~gl~~~~---~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~a 228 (277)
++++++++. .+. .......++..+. .++.+.++++++++.|+|+|++++++.|+++|||++||+||++
T Consensus 203 ~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~ 282 (318)
T d1v71a1 203 EPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLS 282 (318)
T ss_dssp EEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHH
T ss_pred cccchhhhhhccccccccccCCCCccccccccCCcchHHHHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHH
Confidence 999886542 111 1122333443322 2345667889999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEecCCCCCCcchhccHHHHH
Q 023801 229 AAAAIEIAKRPENAGKLIVVIFPSFGERYLSSVLFESVRK 268 (277)
Q Consensus 229 laa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~~~ 268 (277)
+++++++.++ .++++||+|+ ||||.+++ .|.+++.
T Consensus 283 lAa~~~~~~~--~~~~~Vv~il-~GGN~d~~--~~~~~~~ 317 (318)
T d1v71a1 283 FAAARAMKEK--LKNKRIGIII-SGGNVDIE--RYAHFLS 317 (318)
T ss_dssp HHHHHHTGGG--GTTCEEEEEE-CBCCCCHH--HHHHHHT
T ss_pred HHHHHHhHHH--cCCCcEEEEe-CCCCCCHH--HHHHHHc
Confidence 9999987665 4688999999 78995544 6776654
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.6e-46 Score=327.28 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=205.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCh
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 80 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~ 80 (277)
|||+|++++.++.. . ..|+++||||||+|+|++|+++|++|+||||+++++.|+++++.+|++++.+++ ++
T Consensus 50 KdRgA~~~~~~~~~------~-~~vv~aSsGN~g~a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~--~~ 120 (310)
T d1ve5a1 50 KARGALSKALALEN------P-KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--TA 120 (310)
T ss_dssp HHHHHHHHHHHSSS------C-CCEEEECSSHHHHHHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTC--CT
T ss_pred HHHHHHHHHHHhcc------c-CCccccCchhhHHHHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeec--cc
Confidence 79999887765321 1 349999999999999999999999999999999999999999999999999986 56
Q ss_pred HHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhC---CCCCEEEEecCCchhHHHHHHHHhhcCCCcEE
Q 023801 81 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKL 157 (277)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~---~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~v 157 (277)
++..+.+++.+++. +++|++||+||.+ +.|+.+++.||++|+. ..||+||+|+|+||+++|++.++++.++.+++
T Consensus 121 ~~~~~~a~~~~~~~-~~~~~~~~~np~~-~~g~~t~~~Ei~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~i 198 (310)
T d1ve5a1 121 KNREEVARALQEET-GYALIHPFDDPLV-IAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLV 198 (310)
T ss_dssp TTHHHHHHHHHHHH-CCEECCSSSSHHH-HHHHHHHHHHHHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEE
T ss_pred hhHHHHHHHHHHhc-CCcCCCCCCChhh-HhhhhhhHHHHHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccce
Confidence 77888888888876 7899999999998 7899999999999973 46999999999999999999999999999999
Q ss_pred EEEecCCCCccC----CCCC------CCcccCccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeecc
Q 023801 158 YGIEPTESPVLS----GGKP------GPHKIQGIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGIS 224 (277)
Q Consensus 158 igV~~~~~~~~~----~~~~------~~~~~~gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~ 224 (277)
++||+.+++++. .+++ ..+...++... ..++.+.++++|+++.|+|+|++++++.|+++|||++||+
T Consensus 199 i~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~veps 278 (310)
T d1ve5a1 199 LGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPT 278 (310)
T ss_dssp EEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCCTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGG
T ss_pred EEEEeeccchhhhhhccccccccCccccccccccCCCCcchhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcHH
Confidence 999999987653 1111 12233444332 3345566778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcc
Q 023801 225 SGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 225 sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~ 259 (277)
||+++++++++.++ .+++||+|+ ||||.+|+
T Consensus 279 saa~lAa~~~~~~~---~~~~Vvvvl-~GgN~d~~ 309 (310)
T d1ve5a1 279 GALPLAAVLEHGAR---LPQTLALLL-SGGNRDFS 309 (310)
T ss_dssp GGHHHHHHHHHGGG---SCSEEEEEE-CBCCCCCC
T ss_pred HHHHHHHHHHhhHh---cCCCEEEEe-CCCCccCC
Confidence 99999999987664 458999999 78998876
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.5e-42 Score=302.90 Aligned_cols=250 Identities=18% Similarity=0.175 Sum_probs=208.7
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++.++|.+++++|. ++++++||||||+++|++|+++|++|+||||.+. +..+..+++.+||+|+.+++ +
T Consensus 61 K~R~a~~~i~~a~~~g~-----~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~ 133 (351)
T d1v7ca_ 61 KDRGMTLAVSKAVEGGA-----QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--N 133 (351)
T ss_dssp HHHHHHHHHHHHHHTTC-----SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--C
T ss_pred HHHHHHHHHHHHHhcCC-----CeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--c
Confidence 79999999999999886 6799999999999999999999999999999876 56788889999999999985 6
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhc------CC
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEK------NP 153 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~------~~ 153 (277)
++++.+.+++++++. ++++.+ +++|.+ +.||.++++||++|+...+|++++++|+||+++|++.+++.. .+
T Consensus 134 ~~~~~~~a~~l~~~~-~~~~~~-~~~~~~-~~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~ 210 (351)
T d1v7ca_ 134 FDDALRLTQKLTEAF-PVALVN-SVNPHR-LEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKR 210 (351)
T ss_dssp HHHHHHHHHHHHHHS-SCEECS-TTSHHH-HHHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSS
T ss_pred cchhhhhHHHHhhhh-cccccc-ccCchh-hhhhhhHHHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccC
Confidence 789999999999887 666554 446665 889999999999999878999999999999999999887653 46
Q ss_pred CcEEEEEecCCCCccCCCCCCC---cccC--ccCCC---CCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeeccH
Q 023801 154 NIKLYGIEPTESPVLSGGKPGP---HKIQ--GIGAG---FVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGISS 225 (277)
Q Consensus 154 ~~~vigV~~~~~~~~~~~~~~~---~~~~--gl~~~---~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~s 225 (277)
.+++++|++.++.++....+.. +... ++... ...+.+...+.+.++.|+|+|++++++.|+++||+++||+|
T Consensus 211 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~pss 290 (351)
T d1v7ca_ 211 LPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPAS 290 (351)
T ss_dssp CCEEEEEEEGGGCHHHHTSCCSSCCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHH
T ss_pred CcceeeeeccccchhhhcccccCCcccccccccccCcccchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHHH
Confidence 7899999999887654322211 1111 11111 11223446678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 226 GGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 226 g~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
|++++++++++++++ .++++||+++|++|+||.|+
T Consensus 291 g~alAa~~~~~~~~~~~~~~~VV~i~tg~G~k~~~~ 326 (351)
T d1v7ca_ 291 AAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPAT 326 (351)
T ss_dssp HHHHHHHHHHHHTTCSCSSEEEEEEECBBGGGCGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEeCCCcccCHHH
Confidence 999999999999876 46889999998889999996
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.5e-39 Score=296.66 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=206.1
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKG 79 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~ 79 (277)
|||++..++..+.+.+.+..+..+|+++||||||+|+|++|+++|++|+||+|.+ .++.|+.+++.+||+|+.+++ +
T Consensus 154 KDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~ 231 (477)
T d1e5xa_ 154 KDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--D 231 (477)
T ss_dssp THHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--C
T ss_pred HHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--C
Confidence 8999999999999877776666789999999999999999999999999999985 688899999999999999986 7
Q ss_pred hHHHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCC-CCCEEEEecCCchhHHHHHHHHhhc------C
Q 023801 80 MKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK------N 152 (277)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~-~~d~iv~pvG~Gg~~aGi~~~~~~~------~ 152 (277)
++++.+.+++++++. + +|+.++.||.+ +.||+|+++||++|+.. .||++++|+|+||++.|++.+++.. .
T Consensus 232 ~dda~~~~~e~a~~~-~-~~~~~~~N~~~-~~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~ 308 (477)
T d1e5xa_ 232 FDGCMKLIREITAEL-P-IYLANSLNSLR-LEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVD 308 (477)
T ss_dssp HHHHHHHHHHHHHHS-C-EEEGGGSHHHH-HHHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSS
T ss_pred chhhHHHhhhhcccc-c-eeccccccccc-chhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccc
Confidence 899999999998886 4 45667778887 78999999999999964 5999999999999999999999864 2
Q ss_pred CCcEEEEEecCCCCccC----CCCC-------CCcccCccCCCCCccCc------cccccCeEEEeCHHHHHHHHHHHHH
Q 023801 153 PNIKLYGIEPTESPVLS----GGKP-------GPHKIQGIGAGFVPGVL------EVNIIDEVVQVSSDEAIETAKLLAL 215 (277)
Q Consensus 153 ~~~~vigV~~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~~~------~~~~~~~~~~v~d~e~~~a~~~l~~ 215 (277)
..+++++|++++++++. .+.. ..+...++..+. |..+ .....+.++.|+|+|++++++ +++
T Consensus 309 ~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~-p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~-l~~ 386 (477)
T d1e5xa_ 309 RIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGD-PVSIDRAVYALKKCNGIVEEATEEELMDAMA-QAD 386 (477)
T ss_dssp CCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHH
T ss_pred cCceEEEEeccchhhHHHHHHcCCCccccccccccccccccccc-ccchHHHHHHHhhcCceEEecCHHHHHHHHH-HHH
Confidence 45799999999987653 1211 112233333221 2221 134456789999999999997 567
Q ss_pred HcCCeeeccHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcch
Q 023801 216 KEGLFVGISSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 216 ~~gi~~~p~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~~ 260 (277)
++|+++||+||+++++++++.+++. .++++||+++|+.|.|+.+.
T Consensus 387 ~eGi~vePssA~alAal~kl~~~g~i~~~~~VVvl~Tg~glKf~~~ 432 (477)
T d1e5xa_ 387 STGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQS 432 (477)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTSSCTTCCEEEEECBCGGGGHHH
T ss_pred HCCcEEChHHHHHHHHHHHHHHhCCCCCCCcEEEEeCcCcccCHHH
Confidence 8999999999999999999998876 57899999999999999774
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.4e-39 Score=288.63 Aligned_cols=255 Identities=22% Similarity=0.255 Sum_probs=192.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~---~~~~~~~~~~~~Ga~v~~~~~~ 77 (277)
|||++.+++..|+++|.. +.++++|+||||+++|++|+++|++|+||||.. ....|+.+++.|||+|+.+++.
T Consensus 82 KdR~a~~~i~~a~~~G~~----~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 157 (386)
T d1v8za1 82 KTNNAIGQALLAKFMGKT----RLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSG 157 (386)
T ss_dssp HHHHHHHHHHHHHHTTCC----EEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECST
T ss_pred cchHHHHHHHHHhhcCCc----eeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCC
Confidence 799999999999999972 468888999999999999999999999999854 4467999999999999999752
Q ss_pred -CChHHHHHHHHHHHH-hCCCeE-----ecCCCCCCcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHH
Q 023801 78 -KGMKGAVQKAEEILA-KTPNAY-----MLQQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 78 -~~~~~~~~~a~~~~~-~~~~~~-----~~~~~~~~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
..+.++...+.+... ...... ..+++++|.++..+|.+++.||.+|+ +..||+||+|+|+|++++|++.
T Consensus 158 ~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~ 237 (386)
T d1v8za1 158 SRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237 (386)
T ss_dssp TSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHG
T ss_pred cchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHH
Confidence 345666555544433 222222 23455556666679999999998887 3469999999999999999988
Q ss_pred HHhhcCCCcEEEEEecCCCCccCC--------CCCC------------------Cc--ccCccCCCCC---ccCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESPVLSG--------GKPG------------------PH--KIQGIGAGFV---PGVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~~~~~--------~~~~------------------~~--~~~gl~~~~~---~~~~~~~~~ 195 (277)
++++ .+++++|+|+|.+++.... +.+. .+ ...++..... ...+.....
T Consensus 238 ~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (386)
T d1v8za1 238 PFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQR 316 (386)
T ss_dssp GGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTS
T ss_pred Hhhh-ccCceEEEEecCcccccccccccccccCccccccchhheeccCCCCcccccccccccccccccchHHHHHHhcCc
Confidence 7765 6889999999987754321 0000 00 0001110000 001122334
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcchh
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSSV 261 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~~ 261 (277)
++.+.|+|+|++++++.|+++|||+++|+||.+++++++++++. .++++||+++|+.|+||++++
T Consensus 317 ~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~-~~~~~VV~iltG~G~kD~~~~ 381 (386)
T d1v8za1 317 AEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEM-SRDEIIIVNLSGRGDKDLDIV 381 (386)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTS-CTTCEEEEEECBBSGGGHHHH
T ss_pred eEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHHHHHc-CCCCEEEEEeCCCccccHHHH
Confidence 57899999999999999999999999999999999999998764 488999999966699999863
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.9e-37 Score=273.50 Aligned_cols=255 Identities=21% Similarity=0.252 Sum_probs=186.5
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC---HHHHHHHHHcCCEEEEeCC-
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDP- 76 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~---~~~~~~~~~~Ga~v~~~~~- 76 (277)
|||+|..++..|.+.|+ .+.++++|+||||+++|++|+++|++|+||||...+ ..|+.+|+.|||+|+.++.
T Consensus 86 K~R~a~~~i~~A~~~G~----~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g 161 (390)
T d1qopb_ 86 KTNQVLGQALLAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSG 161 (390)
T ss_dssp HHHHHHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECST
T ss_pred chhHHHHHHHHHhhcCC----ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCC
Confidence 79999999999999997 245678999999999999999999999999998655 5679999999999999974
Q ss_pred CCChHHHHHHHH-HHHHhCCCeEecCCCCC-----CcchhhhhhchHHHHHhhh----CCCCCEEEEecCCchhHHHHHH
Q 023801 77 AKGMKGAVQKAE-EILAKTPNAYMLQQFEN-----PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGK 146 (277)
Q Consensus 77 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~-----~~~~~~g~~t~~~Ei~~Q~----~~~~d~iv~pvG~Gg~~aGi~~ 146 (277)
...+.++...+. ..+.......+.....+ +.....+|.++|.|+.+|+ +..||+||+|+|+|++++|++.
T Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~ 241 (390)
T d1qopb_ 162 SATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFA 241 (390)
T ss_dssp TSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHG
T ss_pred chhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhhheec
Confidence 234555544443 33344334444332221 1223468999999998885 3569999999999999999999
Q ss_pred HHhhcCCCcEEEEEecCCCCccCC--------CCCC--------------------CcccCccCCCCCc---cCcccccc
Q 023801 147 FLKEKNPNIKLYGIEPTESPVLSG--------GKPG--------------------PHKIQGIGAGFVP---GVLEVNII 195 (277)
Q Consensus 147 ~~~~~~~~~~vigV~~~~~~~~~~--------~~~~--------------------~~~~~gl~~~~~~---~~~~~~~~ 195 (277)
+|++ .+.+++++++|........ +.+. .+...++...... ..+.....
T Consensus 242 ~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~ 320 (390)
T d1qopb_ 242 DFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR 320 (390)
T ss_dssp GGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred cccc-ccceeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccccccccchhHHHHHHhcCc
Confidence 9987 4678999999876532211 1000 0111122111000 11223345
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 196 DEVVQVSSDEAIETAKLLALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 196 ~~~~~v~d~e~~~a~~~l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
++.+.|+|+|++++++.|++.|||+++|+++.+++++++++++...++++||+++|+.|+|++++
T Consensus 321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~ 385 (390)
T d1qopb_ 321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFT 385 (390)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHH
T ss_pred eEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHHhhhcCCCCCEEEEEECCCCccCHHH
Confidence 78999999999999999999999999998889999999988765446667777674449999885
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-34 Score=251.99 Aligned_cols=259 Identities=16% Similarity=0.153 Sum_probs=187.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPA 77 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~---Ga~v~~~~~~ 77 (277)
|||++.++|.+++++|.- + ..++++|+||||.|+|++|+.+|++|++|+|...+..+...+..+ |++++..+..
T Consensus 54 K~R~~~~~i~~a~~~g~~--~-~~~~~~s~gN~g~a~A~~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 130 (325)
T d1j0aa_ 54 KIRKLEYLLGDALSKGAD--V-VITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDS 130 (325)
T ss_dssp HHHHHHHHHHHHHHTTCS--E-EEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCST
T ss_pred HHHHHHHHHHHHHHCCCC--e-eEEEeeCcchHHHHHHHHHhhhcCceEEEeecccccchhhhhccccceeEEeccCccc
Confidence 799999999999999861 1 334567999999999999999999999999998876665555444 3333333322
Q ss_pred CChHHH-HHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcE
Q 023801 78 KGMKGA-VQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIK 156 (277)
Q Consensus 78 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~ 156 (277)
...... ...+..........+++.++.+......++.+++.|+.+|.+..||+||+|+|+|++++|++.+++..++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~ 210 (325)
T d1j0aa_ 131 FELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIR 210 (325)
T ss_dssp TTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHHHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCE
T ss_pred ccchHHHHHHHHHHHhhccCceeeecCCCccccccccchhhcccccccccccceeecccccchhhhhHHHHHHhhCcccc
Confidence 111111 1222232223334455555544444477899999999999988899999999999999999999999999999
Q ss_pred EEEEecCCCCccCCCCCC---CcccCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHHcCCeeec-cHHHHHHHH
Q 023801 157 LYGIEPTESPVLSGGKPG---PHKIQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKEGLFVGI-SSGGAAAAA 232 (277)
Q Consensus 157 vigV~~~~~~~~~~~~~~---~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p-~sg~alaa~ 232 (277)
+++|++............ ....+....+...+....+..+..+.|+|+|++++++.|+++|||++|| |||++++++
T Consensus 211 v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l 290 (325)
T d1j0aa_ 211 PVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGL 290 (325)
T ss_dssp EEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHH
T ss_pred ccccccccchhhhhhhhcccccccccccCCCcccchhhhhceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHH
Confidence 999999887543210000 0011122222222334455677889999999999999999999999999 799999999
Q ss_pred HHHHhcCCCCCCeEEEEecCCCCCCcchhccHHH
Q 023801 233 IEIAKRPENAGKLIVVIFPSFGERYLSSVLFESV 266 (277)
Q Consensus 233 ~~~~~~~~~~~~~vv~i~~~gG~~~~~~~~~~~~ 266 (277)
+++++++. .+++||+|+ |||+ +...-|.+.
T Consensus 291 ~~~~~~~~-~~~~vv~i~-tGGl--~g~~~~~~~ 320 (325)
T d1j0aa_ 291 VDLARKGE-LGEKILFIH-TGGI--SGTFHYGDK 320 (325)
T ss_dssp HHHHHTTC-SCSEEEEEE-CCCH--HHHHHTHHH
T ss_pred HHHHHcCC-CCCeEEEEE-CCch--HHHHHHHHH
Confidence 99998875 589999999 8898 444445443
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=100.00 E-value=1.6e-32 Score=239.44 Aligned_cols=254 Identities=17% Similarity=0.103 Sum_probs=184.3
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH--------HHHHHHHHcCCEEE
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELV 72 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~--------~~~~~~~~~Ga~v~ 72 (277)
|||++.++|.+++++|. ++ ..++++|+||||+|+|++|+.+|++|++|+|...+. .+...++.+|+.++
T Consensus 51 K~R~~~~~i~~a~~~g~--~~-v~~~~~s~gN~g~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~ 127 (338)
T d1tyza_ 51 KTRKLEYLIPEALAQGC--DT-LVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVR 127 (338)
T ss_dssp HHHHHHHHHHHHHHTTC--CE-EEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHCCC--Ce-EEEEccCCchHHHHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccc
Confidence 79999999999999986 11 234467999999999999999999999999987653 45667889999999
Q ss_pred EeCCCCCh--H-HHHHHHHHHHHhCCCeEecCCCCCCcchhhhhhchHHHHHhh-----hCCCCCEEEEecCCchhHHHH
Q 023801 73 LTDPAKGM--K-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG-----SGGRIDALVSGIGTGGTITGA 144 (277)
Q Consensus 73 ~~~~~~~~--~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q-----~~~~~d~iv~pvG~Gg~~aGi 144 (277)
.++...+. . ...+.+....+..++.++..++.++.. ..+..+.+.|+..| .+..||+||+|+|+|++++|+
T Consensus 128 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~ 206 (338)
T d1tyza_ 128 LVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHP-LGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGM 206 (338)
T ss_dssp CCCC-------CHHHHHHHHHHHTTCCEEEECGGGTSST-TTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHH
T ss_pred cccCCcchhHHHHHHHHHhhhhhcccceeeecccCccCc-cccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHH
Confidence 99853221 1 122233333344445555555544443 45556666554433 345799999999999999999
Q ss_pred HHHHhhcCCCcEEEEEecCCCCccCCCCCC----CcccCccC---CCCCccCccccccCeEEEeCHHHHHHHHHHHHHHc
Q 023801 145 GKFLKEKNPNIKLYGIEPTESPVLSGGKPG----PHKIQGIG---AGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALKE 217 (277)
Q Consensus 145 ~~~~~~~~~~~~vigV~~~~~~~~~~~~~~----~~~~~gl~---~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~ 217 (277)
+.+|+..++.++++++++..++........ ........ .....+.+..++.++.+.|+|+|++++++.|+++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~e 286 (338)
T d1tyza_ 207 VVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTE 286 (338)
T ss_dssp HHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccceeeccchhhhccccccccccccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHh
Confidence 999999999999999998877533210000 00000001 01123345567888999999999999999999999
Q ss_pred CCeeec-cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcc
Q 023801 218 GLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 218 gi~~~p-~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 259 (277)
||++|| +||+++++++++++++. .++++||+|+ |||...+.
T Consensus 287 GI~~eP~~s~~a~a~l~~~~~~~~~~~g~~Vv~i~-TGG~~~~~ 329 (338)
T d1tyza_ 287 GMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAH-LGGVPALN 329 (338)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGG
T ss_pred CCcCChHHHHHHHHHHHHHHhcCCCCCcCeEEEEE-CCchhhHH
Confidence 999999 68999999999998877 5789999999 88975444
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=99.98 E-value=3.7e-32 Score=237.81 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH-----------HHHHHHHcCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-----------RRIILRAFGA 69 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~-----------~~~~~~~~Ga 69 (277)
|||++.++|.+++++|. ++ ..++++|+||||+|+|++|+++|++|++|+|...+.. ++..++.+|+
T Consensus 51 K~R~~~~~i~~a~~~g~--~~-i~~~~as~gN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~ 127 (341)
T d1f2da_ 51 KLRKLEYIVPDIVEGDY--TH-LVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGA 127 (341)
T ss_dssp HHHHHTTTHHHHHHSCC--SE-EEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCC--CE-EEEEccCcchHHHHHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccc
Confidence 79999999999999986 11 2346789999999999999999999999999987654 4567789999
Q ss_pred EEEEeCCCCCh---HHHHHHHHHHHHhCCCeEecCCCC--CCcchhhhhhchHHHHHhhh---CCCCCEEEEecCCchhH
Q 023801 70 ELVLTDPAKGM---KGAVQKAEEILAKTPNAYMLQQFE--NPANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTI 141 (277)
Q Consensus 70 ~v~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~g~~t~~~Ei~~Q~---~~~~d~iv~pvG~Gg~~ 141 (277)
++..++...+. .................++.+.+. ++.. ..++.+.+.|+.+|+ ...||++|+|+|+|+++
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~ 206 (341)
T d1f2da_ 128 DVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYG-GLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTT 206 (341)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGGTTSTTT-TTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHH
T ss_pred cccccCCchhhHHHHHHHHHHHHHHhhccCccccCCcccccccc-hhhehhhhHHHHHHHhhccCCceEEEEecccccch
Confidence 99999853221 122333333334443444443332 3444 567788888887765 35799999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEEecCCCCccCCCCCC---Ccc--cCccCCCCCccCccccccCeEEEeCHHHHHHHHHHHHHH
Q 023801 142 TGAGKFLKEKNPNIKLYGIEPTESPVLSGGKPG---PHK--IQGIGAGFVPGVLEVNIIDEVVQVSSDEAIETAKLLALK 216 (277)
Q Consensus 142 aGi~~~~~~~~~~~~vigV~~~~~~~~~~~~~~---~~~--~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 216 (277)
+|++.+++...+.++++++.+............ ... ......+.....+..++.+..+.|+|+|++++++.|+++
T Consensus 207 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~ 286 (341)
T d1f2da_ 207 AGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQ 286 (341)
T ss_dssp HHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcccccccccccccchhhhhhhhhccccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHH
Confidence 999999999999999999998877432110000 000 001111222344556778888999999999999999999
Q ss_pred cCCeeec-cHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCcc
Q 023801 217 EGLFVGI-SSGGAAAAAIEIAKRPE-NAGKLIVVIFPSFGERYLS 259 (277)
Q Consensus 217 ~gi~~~p-~sg~alaa~~~~~~~~~-~~~~~vv~i~~~gG~~~~~ 259 (277)
|||++|| +||++++++.++++++. .++++||+|+ |||..++.
T Consensus 287 eGI~veP~ys~~a~agl~~l~~~~~i~~~~~Vv~i~-TGG~~~~~ 330 (341)
T d1f2da_ 287 EGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVH-LGGAPALS 330 (341)
T ss_dssp HSCCCCTTTHHHHHHHHHHHHHTTCSCTTCEEEEEE-CCCGGGGG
T ss_pred hCcccChhhhHHHHHHHHHHHHcCCCCCcCeEEEEE-CCCcccHH
Confidence 9999999 58999999999999887 4788999999 99996654
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=3.1e-19 Score=159.25 Aligned_cols=251 Identities=11% Similarity=0.014 Sum_probs=167.6
Q ss_pred CChhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHC-CCeEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCC
Q 023801 1 MCRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPA-SMSLERRIILRAFGAELVLTDPAK 78 (277)
Q Consensus 1 ~dR~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~-Gl~~~vvvp~-~~~~~~~~~~~~~Ga~v~~~~~~~ 78 (277)
|||++..+...+...+. .+..+|++|||||+|.|++.+.+.. +++++|+.|+ .+++.+..+|..+|++|+.+.-..
T Consensus 107 KD~a~~~~~~~~~~~~~--~~~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G 184 (428)
T d1vb3a1 107 KDFGGRFMAQMLTHIAG--DKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG 184 (428)
T ss_dssp HHHHHHHHHHHHHHHTT--TCCEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES
T ss_pred ccchhhHHHHHHhhhcc--cccceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHHhhccCCceEEecCC
Confidence 68887654333332222 1225799999999999999888876 5888888896 578999999999999886654334
Q ss_pred ChHHHHHHHHHHHHhCC----CeEecCCCCCCcchhhhhhchHHHHHhhhCC---CCCEEEEecCCchhHHHHHHHHhhc
Q 023801 79 GMKGAVQKAEEILAKTP----NAYMLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEK 151 (277)
Q Consensus 79 ~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q~~~---~~d~iv~pvG~Gg~~aGi~~~~~~~ 151 (277)
+|++|.+.++++....+ ......-.-|+.. +.+|.+..+|++.|+.. .++.+++|+|+.|.+.+.+.+.+.-
T Consensus 185 ~fDDcq~lvk~~f~d~~~~~~~~l~s~NSIN~~R-l~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mG 263 (428)
T d1vb3a1 185 DFDACQALVKQAFDDEELKVALGLNSANSINISR-LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLG 263 (428)
T ss_dssp CHHHHHHHHHHGGGCHHHHHHHTEECCSTTSHHH-HHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHhhhhhhhhcCCeeeecccChhH-HhhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHHHhhhcC
Confidence 89999998887764321 0111111224444 67999999999999852 4789999999999999988888776
Q ss_pred CCCcEEEEEecCCCCccC----CCCC-----CCcccCccCCCCCccCcc----------ccccCeEEEeCHHHHHHHHHH
Q 023801 152 NPNIKLYGIEPTESPVLS----GGKP-----GPHKIQGIGAGFVPGVLE----------VNIIDEVVQVSSDEAIETAKL 212 (277)
Q Consensus 152 ~~~~~vigV~~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~~~~----------~~~~~~~~~v~d~e~~~a~~~ 212 (277)
.|.-+++...-... .+. .+.. ..+....+..+ .|.++. .......+.+.|+|....++.
T Consensus 264 LPi~~~i~AtN~Nd-il~~f~~tG~y~~~~~~~TlSpAMDI~-~pSNfERl~~l~~~~~~~l~~~~~~~~dde~~~~i~~ 341 (428)
T d1vb3a1 264 LPVKRFIAATNVND-TVPRFLHDGQWSPKATQATLSNAMDVS-QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMR 341 (428)
T ss_dssp CCCSEEEEEECSCC-HHHHHHHHSCCCCCCCCCCSSGGGCCS-SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHH
T ss_pred CceeeeecccccCc-cchhhhhCCceecccccccCchHhhhc-ccCCHHHHHHHHHhhhhhhcccceeeccHHHHHHHHH
Confidence 66667766655443 221 1211 11222222221 222221 122233566666677777777
Q ss_pred HHHHcCCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 213 LALKEGLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 213 l~~~~gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
..+++|+++||.||++++++.+.. .++...|++-|....|..+.
T Consensus 342 ~~~~~gyi~DPHTAvg~~a~~~~~----~~~~~~V~LaTAHP~KF~d~ 385 (428)
T d1vb3a1 342 ELKELGYTSEPHAAVAYRALRDQL----NPGEYGLFLGTAHPAKFKES 385 (428)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTTC----CTTCEEEEEECBCGGGGHHH
T ss_pred HHHHcCceeCCcHHHHHHHHHHhh----CCCCCEEEEECcCchhCHHH
Confidence 788899999999999999876432 35567788887777776553
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=3.3e-09 Score=95.47 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=150.2
Q ss_pred cEEEeeCCchHHHHHHHHHHH-CCCeEEEEeCCC-CCHHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCC--Ce
Q 023801 23 SVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPAS-MSLERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTP--NA 97 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~-~Gl~~~vvvp~~-~~~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~--~~ 97 (277)
-+|++||||-+|.|.+.+.+. -+++++|+-|++ +++...++|...++ +|+.+.-..++++|....+++-.... ..
T Consensus 153 ~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~ 232 (511)
T d1kl7a_ 153 ITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSK 232 (511)
T ss_dssp EEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--
T ss_pred EEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhcc
Confidence 479999999999999999885 589999999985 78888888887744 77666544589999999988876442 11
Q ss_pred EecCCCCCCcchh--h----hhhchHHHHHhhhCCCCCEEEEecCCchhHHHHHHHHhhcCCCcEEEEEecCCCCccC--
Q 023801 98 YMLQQFENPANPK--I----HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKLYGIEPTESPVLS-- 169 (277)
Q Consensus 98 ~~~~~~~~~~~~~--~----g~~t~~~Ei~~Q~~~~~d~iv~pvG~Gg~~aGi~~~~~~~~~~~~vigV~~~~~~~~~-- 169 (277)
+.+... |--||. . .|-+....+..+..+++=.+++|+|+=|.+.+-+.+-+.-.|--|+|...-++. .+.
T Consensus 233 ~~l~s~-NSiNw~Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~Nd-iL~rf 310 (511)
T d1kl7a_ 233 HNVGAV-NSINWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND-ILDRF 310 (511)
T ss_dssp CCBCCC-CSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC-HHHHH
T ss_pred cccccc-cceeehhhhhhHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcc-hHHHH
Confidence 222222 333421 2 333333333332223444799999997776665555444345558888776665 221
Q ss_pred --CC-----CCC-CcccCccCCCCCccCcc---c------------------------------------------cccC
Q 023801 170 --GG-----KPG-PHKIQGIGAGFVPGVLE---V------------------------------------------NIID 196 (277)
Q Consensus 170 --~~-----~~~-~~~~~gl~~~~~~~~~~---~------------------------------------------~~~~ 196 (277)
.| +.. ++....+... +|.++. . ...-
T Consensus 311 ~~tG~y~~~~~v~~T~SPSMDI~-vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~F 389 (511)
T d1kl7a_ 311 LKSGLYERSDKVAATLSPAMDIL-ISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKDF 389 (511)
T ss_dssp HHHSEEECCSSCCCCSCGGGCCS-SCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTTE
T ss_pred hcCCCCCCcCcccCcCccHHhhh-hhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhccccce
Confidence 11 111 1111111110 111110 0 0012
Q ss_pred eEEEeCHHHHHHHHHHHHHHc----CCeeeccHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCcch
Q 023801 197 EVVQVSSDEAIETAKLLALKE----GLFVGISSGGAAAAAIEIAKRPENAGKLIVVIFPSFGERYLSS 260 (277)
Q Consensus 197 ~~~~v~d~e~~~a~~~l~~~~----gi~~~p~sg~alaa~~~~~~~~~~~~~~vv~i~~~gG~~~~~~ 260 (277)
....++|+|+++.++.++++. |.++||.||+++.++.++..+...++...|++-|..--|..+.
T Consensus 390 ~s~svsD~et~~tIk~vye~~~n~~gYllDPHTAVG~~aa~k~~~~~~~~~~p~VvLATAHPaKFpda 457 (511)
T d1kl7a_ 390 TSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSIQYISLSTAHPAKFADA 457 (511)
T ss_dssp EEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHHHHHHCCTTSEEEEEECBCGGGGHHH
T ss_pred eEEEeCHHHHHHHHHHHHHhcCccCCeEECCcHHHHHHHHHHHHHhccCCCCcEEEEeCcChhhhHHH
Confidence 378899999999999999987 9999999999999998876554334556788876666665553
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.037 Score=41.18 Aligned_cols=64 Identities=23% Similarity=0.269 Sum_probs=50.3
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
.++.++..++||.+ |+...+|.-|...+..++.+|.+-++++. ..+.|++..+.+||+.+....
T Consensus 16 ~~a~~~~~~~~gd~-VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 79 (171)
T d1pl8a2 16 IHACRRGGVTLGHK-VLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS 79 (171)
T ss_dssp HHHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHhCCCCCCE-EEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence 45677788999955 66667899999999999999986555543 457889999999998776654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.57 E-value=0.035 Score=41.20 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=47.9
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.+++++..++||.+. +...+|.-|...+..++.+|.+++++ ..++.|++..+.+|++.....
T Consensus 16 ~~a~~~~~~~~g~~v-lV~G~G~vG~~~~~~ak~~Ga~vi~v---~~~~~r~~~a~~~ga~~~~~~ 77 (170)
T d1e3ja2 16 VHACRRAGVQLGTTV-LVIGAGPIGLVSVLAAKAYGAFVVCT---ARSPRRLEVAKNCGADVTLVV 77 (170)
T ss_dssp HHHHHHHTCCTTCEE-EEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhCCCCCCEE-EEEcccccchhhHhhHhhhccccccc---chHHHHHHHHHHcCCcEEEec
Confidence 345566678999664 44578999999999999999886665 346688999999999776554
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0095 Score=44.86 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=47.2
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.++||.+.+|...+|.-|..+...|+..|.+++++.. ++.|++.++.+||+.++-
T Consensus 22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence 5678999977677778899999999999999998777643 468888899999976554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.43 E-value=0.011 Score=44.69 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=51.4
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.+.++||.+.+|...+|.-|.++...|+..|.+++.+.. ++.|.+.++.+|++.++...
T Consensus 23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~ 82 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK 82 (182)
T ss_dssp TTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence 5778899988888899999999999999999999887753 45789999999998876654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.41 E-value=0.016 Score=42.99 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+++++..++||.+ |+...+|.-|...+..++.+|.+++++ ...+.|++..+.+||+.++..
T Consensus 18 ~al~~~~~~~g~~-VlV~GaG~vG~~~~~~ak~~G~~Vi~~---~~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 18 KGLKQTNARPGQW-VAISGIGGLGHVAVQYARAMGLHVAAI---DIDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp HHHHHHTCCTTCE-EEEECCSHHHHHHHHHHHHTTCEEEEE---ESCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHhCCCCCCE-EEEeeccccHHHHHHHHHHcCCcccee---cchhhHHHhhhccCccccccc
Confidence 4455566888865 555677999999999999999876665 346788999999999766654
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0053 Score=39.90 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCC
Q 023801 5 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 69 (277)
Q Consensus 5 a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga 69 (277)
|+..+....+.+.++|+.+.+|...+|.-|......++.+|.+++.+.. +++|.+.++.+||
T Consensus 16 A~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA 77 (77)
T d1o8ca2 16 AMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA 77 (77)
T ss_dssp HHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred HHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence 4444556667788888888888899999999999999999999887654 4477888888886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.033 Score=41.58 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=46.7
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+.+.++||.+.+|...+|.-|.+....|+.+|.++++.+. ++.|++.++.+|++-++.
T Consensus 21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi~ 79 (174)
T d1yb5a2 21 IHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFN 79 (174)
T ss_dssp HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HHHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCcccccc
Confidence 35778999977666666799999999999999999777663 457888999999965543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.01 E-value=0.033 Score=41.11 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+++++..++||.+ |+...+|.-|...+..++..|.+++++ ..++.|++.++.+|++.+....
T Consensus 18 ~al~~~~~~~g~~-vlv~G~G~iG~~a~~~a~~~g~~v~~~---~~~~~r~~~~k~~Ga~~~~~~~ 79 (168)
T d1rjwa2 18 KALKVTGAKPGEW-VAIYGIGGLGHVAVQYAKAMGLNVVAV---DIGDEKLELAKELGADLVVNPL 79 (168)
T ss_dssp HHHHHHTCCTTCE-EEEECCSTTHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHhCCCCCCE-EEEeecccchhhhhHHHhcCCCeEecc---CCCHHHhhhhhhcCcceecccc
Confidence 3444556889865 555567999999999999999986655 3467899999999998877664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.062 Score=40.30 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHH-HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 11 DAE-AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 11 ~a~-~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+++ +.+.++||.+ |+...+|.-|......|+.+|.+-++++ +.++.|++..+.+||+.++..
T Consensus 18 ~al~~~~~~~~G~~-VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~--~~~~~~~~~a~~lGa~~vi~~ 80 (182)
T d1vj0a2 18 HAFDEYPESFAGKT-VVIQGAGPLGLFGVVIARSLGAENVIVI--AGSPNRLKLAEEIGADLTLNR 80 (182)
T ss_dssp HHHHTCSSCCBTCE-EEEECCSHHHHHHHHHHHHTTBSEEEEE--ESCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHhCCCCCCE-EEEECCCccchhheeccccccccccccc--ccccccccccccccceEEEec
Confidence 454 5678899965 5555679999999999999998533333 236688899999999766554
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.72 E-value=0.014 Score=44.50 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=50.1
Q ss_pred HcCCCCCCCcEEEe-eCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeC
Q 023801 14 AKGLITPGESVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTD 75 (277)
Q Consensus 14 ~~g~l~~g~~~vv~-aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~ 75 (277)
+.+.++||.+.+|. +.+|.-|.+....|+.+|.++++++.... .+.+...++.+||+.++..
T Consensus 22 ~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 22 HYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp SSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 46789999776664 67899999999999999999998886543 4567888899999887764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.69 E-value=0.059 Score=39.90 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
-+++++..++||.+.+|...+|.-|..++..++..|...++++.. ++.|++.++.+|++.+...
T Consensus 17 ~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~ 80 (170)
T d1jvba2 17 YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA 80 (170)
T ss_dssp HHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence 345667788999665555557999999999999999866666554 4678999999999765543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.67 E-value=0.053 Score=41.46 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=49.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
++.++..++||.+ |+...+|.-|...+..++.+|...++++. .++.|++..+.+|++.+....
T Consensus 16 ~a~~~a~v~~G~t-VlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 78 (195)
T d1kola2 16 HGAVTAGVGPGST-VYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLSL 78 (195)
T ss_dssp HHHHHTTCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETTS
T ss_pred HHHHHhCCCCCCE-EEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeCC
Confidence 3456678999965 55567899999999999999987666653 357899999999999876654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.64 E-value=0.044 Score=41.04 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=46.8
Q ss_pred HcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 14 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 14 ~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+.+.++||.+.+|...+|.-|..+.-.|+.+|.++++... ++.|.+.++.+|++.++.
T Consensus 19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~ 76 (183)
T d1pqwa_ 19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD 76 (183)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred HHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence 6678899977666677899999999999999999887764 457788889999876544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.60 E-value=0.016 Score=43.45 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
+|+..+..+.+.|.++++.+.+|.+-+|--|.+..-.|+.+|.+++..+... .|.+.++.+|++.+..
T Consensus 7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~---~k~~~~~~lGad~vi~ 74 (167)
T d1tt7a2 7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR---EAADYLKQLGASEVIS 74 (167)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS---STHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH---HHHHHHHhhcccceEe
Confidence 3555555567788877777788888899999999999999999988876643 5788889999987653
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.56 E-value=0.02 Score=42.87 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=47.4
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.++++++.++||.+.+|...+|.-|.+....|+.+|.+++++... +.|++.++.+|++.++
T Consensus 17 ~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~---~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 17 YLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR---PEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS---GGGSHHHHHTTCSEEE
T ss_pred HHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccc---ccccccccccccceee
Confidence 345566789999766666668999999999999999987766543 4677888899997554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.30 E-value=0.026 Score=42.57 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 4 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 4 ~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
+|+..+....+.|.+++|.+.+|...+|.-|.+.--.|+.+|.+++...... .|.+.++.+||+.+...
T Consensus 15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~---~k~~~~~~lGa~~vi~~ 83 (176)
T d1xa0a2 15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA---AEHDYLRVLGAKEVLAR 83 (176)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT---TCHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch---HHHHHHHhcccceeeec
Confidence 3555666677889998898889999999999999999999999998876544 57888889999987643
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.13 E-value=0.03 Score=42.27 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 5 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 5 a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
|+..+....+.|...++.+.||...+|.-|....-.|+.+|.+++.+.. ++.|.+.++.+||+.++..
T Consensus 16 A~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~~k~~~~~~lGad~vi~~ 83 (177)
T d1o89a2 16 AMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGASRVLPR 83 (177)
T ss_dssp HHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTEEEEEEG
T ss_pred HHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec---chhHHHHHHhhcccccccc
Confidence 4444555556666555557788889999999999999999999888765 4467788889999877653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.08 E-value=0.068 Score=39.97 Aligned_cols=60 Identities=18% Similarity=0.074 Sum_probs=46.1
Q ss_pred HHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 11 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 11 ~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++.++..++||.+ |+...+|--|...+..|+.+|.+-++++.. ++.|++..+.+||+-++
T Consensus 18 ~a~~~a~~~~g~~-VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i 77 (174)
T d1jqba2 18 HGAELADIEMGSS-VVVIGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDIL 77 (174)
T ss_dssp HHHHHTTCCTTCC-EEEECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEE
T ss_pred HHHHHhCCCCCCE-EEEEcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccc
Confidence 4567788999966 455678999999999999999865554433 56888999999986544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.054 Score=40.13 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=47.5
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
-+++++..++||.+ |+...+|.-|...+..|+.+|.+.+++.. ++.|++..+.+|++.++..
T Consensus 20 y~al~~~~~~~G~~-VlI~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~~ 81 (168)
T d1uufa2 20 YSPLRHWQAGPGKK-VGVVGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVNS 81 (168)
T ss_dssp HHHHHHTTCCTTCE-EEEECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEET
T ss_pred HHHHHHhCCCCCCE-EEEeccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEEC
Confidence 45667788999966 44456799999999999999998876544 3356778889999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.057 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=45.8
Q ss_pred HHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 10 SDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 10 ~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
-+++++..++||.+ |+...+|.-|...+..++.+|.+++++-. ++.|++..+.+||+-++.
T Consensus 17 ~~al~~~~~~~g~~-vlI~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i~ 77 (168)
T d1piwa2 17 YSPLVRNGCGPGKK-VGIVGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYIA 77 (168)
T ss_dssp HHHHHHTTCSTTCE-EEEECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEEE
T ss_pred HHHHHHhCcCCCCE-EEEECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEee
Confidence 35666677899966 55566799999999999999998766533 335788889999965443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.51 E-value=0.12 Score=38.41 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
++.+.++||.+ |+...+|--|...+..|+.+|.+.+++... ++.|++..+.+|+.-++
T Consensus 21 ~~~~~~~~g~~-VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i 78 (174)
T d1f8fa2 21 INALKVTPASS-FVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI 78 (174)
T ss_dssp HTTTCCCTTCE-EEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence 56778899965 555677999999999999999987776543 56888888999985443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.88 E-value=0.26 Score=36.23 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=42.6
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
.++||. .|+...+|.-|...+..++.+|...++++.. ++.|++.++.+|++.++..
T Consensus 29 ~~~~g~-~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~ 84 (172)
T d1h2ba2 29 TLYPGA-YVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA 84 (172)
T ss_dssp TCCTTC-EEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred ccCCCC-EEEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence 467874 4666778999999999999999876665533 4688999999999755543
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.34 E-value=0.24 Score=36.81 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeC---------CCCCHHHHHHHHHcCCEEEE
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP---------ASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp---------~~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.....+++|.|.|- + ..||.+|+|.++..++-+. -|++.++|.- ...++..++.++..|.+|+.
T Consensus 19 ~~l~~a~~rA~Elgi-~---~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 92 (190)
T d1vp8a_ 19 ETLRLAVERAKELGI-K---HLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 92 (190)
T ss_dssp HHHHHHHHHHHHHTC-C---EEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCC-C---eEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcCCEEEE
Confidence 345567788888884 2 4455556699998777765 3899877752 24578999999999999987
Q ss_pred eCC
Q 023801 74 TDP 76 (277)
Q Consensus 74 ~~~ 76 (277)
...
T Consensus 93 ~tH 95 (190)
T d1vp8a_ 93 QSH 95 (190)
T ss_dssp CCC
T ss_pred ecc
Confidence 764
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.28 E-value=0.14 Score=38.44 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=44.5
Q ss_pred HcCCCCCC--CcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 14 AKGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 14 ~~g~l~~g--~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
+.+.++|| .+.+|...+|.-|......|+.+|.+.++.+... ++.+....+.+|++.++-..
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~~ 85 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNYK 85 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEETT
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeecc
Confidence 44567776 4566666689999999999999999877655442 33445556689998777654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.25 E-value=0.21 Score=37.11 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=47.3
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
++.+.++||.+ |+...+|--|...+..++.+|.+.+++... ++.|++..+.+|++.+..
T Consensus 21 ~~~a~v~~G~~-VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~ 79 (174)
T d1e3ia2 21 INTAKVTPGST-CAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN 79 (174)
T ss_dssp HTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHhhCCCCCCE-EEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence 46788999955 666688999999999999999877776554 446889999999976654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.87 E-value=0.19 Score=37.08 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=44.1
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+++.++||.+ |+....|--|......++.+|.+.++++.. ++.|++..+.+||+-++
T Consensus 21 ~~~~~~~~G~t-VlI~GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i 78 (176)
T d2fzwa2 21 VNTAKLEPGSV-CAVFGLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCE-EEEecchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence 36788999965 555556677999999999999887777644 55778888999986544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.29 E-value=0.26 Score=36.49 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+++.++||.+ |+....|--|......|+.+|...++++.. ++.|++..+.+||+-++
T Consensus 20 ~~~a~~~~G~~-VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i 77 (174)
T d1p0fa2 20 VNTAKVTPGST-CAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL 77 (174)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence 46788999954 666678999999999999999877766654 45788888999997655
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.03 E-value=0.48 Score=35.04 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+++.++||. +|+....|--|......|+.+|..-++++.. ++.|++..+.+||+.++-
T Consensus 22 ~~~~~~~~g~-tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in 80 (176)
T d1d1ta2 22 VKTGKVKPGS-TCVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS 80 (176)
T ss_dssp HTTSCCCTTC-EEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred HHhhCCCCCC-EEEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence 4677889995 5777788999999999999999866655543 457888889999976553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.27 E-value=0.6 Score=34.24 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 73 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~ 73 (277)
.+.+.++||.+ |+....|--|...+..++.+|-..++++.. ++.|.+..+.+|++-.+
T Consensus 21 ~~~~~vk~Gdt-VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~--~~~k~~~a~~~Ga~~~i 78 (176)
T d2jhfa2 21 VKVAKVTQGST-CAVFGLGGVGLSVIMGCKAAGAARIIGVDI--NKDKFAKAKEVGATECV 78 (176)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHhhCCCCCCE-EEEECCCCcHHHHHHHHHHcCCceEEeecC--cHHHHHHHHHhCCeeEE
Confidence 46788999955 566666778999999999998776666544 44677788888875443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.16 E-value=1.2 Score=35.35 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEe
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLT 74 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~ 74 (277)
|++.|||.+++.-|+++|..-.+.|.++++.-..... ....+....+|.+++.+
T Consensus 25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~ 80 (294)
T d1w6ua_ 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI 80 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEE
Confidence 4478999999999999999988999887765432211 11122334556665544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.14 E-value=0.77 Score=33.47 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 023801 13 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 74 (277)
Q Consensus 13 ~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~ 74 (277)
.+.+.++||.+ |+....|--|...+..++.+|-..++.+.. .+.|++..+.+||+-++-
T Consensus 21 ~~~a~~k~g~~-VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~in 79 (175)
T d1cdoa2 21 VNTAKVEPGST-CAVFGLGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFVN 79 (175)
T ss_dssp HTTTCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEEC
T ss_pred HHhhCCCCCCE-EEEEecCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEEc
Confidence 36788999965 555455556666666677777766655533 456888889999866543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.01 E-value=1.5 Score=34.15 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=43.6
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||.+++.-|+++|....+.|.++++.-..... ....+..+.+|.+++.+.. -.+.++..+..++..++.
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4477899999999999999999999886665322111 1112334566777655431 123344444444444443
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=89.67 E-value=1.4 Score=33.25 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHH-cCCC-CCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCE
Q 023801 3 RIGYSMISDAEA-KGLI-TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 70 (277)
Q Consensus 3 R~a~~~v~~a~~-~g~l-~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~ 70 (277)
++.++.++.+.+ +|.- -.| .+|+....||.|..+|......|.+++++ +....++.....+|++
T Consensus 7 ~Gv~~~~~~~~~~~g~~~L~g-k~v~IqG~G~VG~~~A~~L~~~Gakvvv~---d~d~~~~~~~~~~g~~ 72 (201)
T d1c1da1 7 VGVFEAMKATVAHRGLGSLDG-LTVLVQGLGAVGGSLASLAAEAGAQLLVA---DTDTERVAHAVALGHT 72 (201)
T ss_dssp HHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTTCEEEEE---CSCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHhCCCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEe---cchHHHHHHHHhhccc
Confidence 566777777654 3421 134 57999999999999999999999887654 2233444444444443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.62 E-value=0.35 Score=33.11 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH
Q 023801 18 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL 58 (277)
Q Consensus 18 l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~ 58 (277)
+.|+.++|-.-.+|..|+-+|.+|+++|++++++-|...++
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P 47 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP 47 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence 35665678888999999999999999999999998864443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.91 E-value=0.64 Score=36.58 Aligned_cols=75 Identities=9% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHH--HHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhCC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--RRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKTP 95 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~--~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~~ 95 (277)
|+..|||..++.-|+++|..-.+.|.++++.-....... ..+..+.+|.++..+.. -.+.++..+..++..++.+
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG 86 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 346789999999999999999999998777655443322 22334667887765542 1244455555566666653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=2.4 Score=32.95 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=25.0
Q ss_pred CcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 22 ESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 22 ~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
+..|||..++--|.++|....+.|.++++.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~ 40 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGC 40 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 367888899999999999998899886665
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=87.71 E-value=3.3 Score=32.16 Aligned_cols=74 Identities=12% Similarity=0.207 Sum_probs=44.4
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCH-H--HHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-E--RRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~-~--~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++.-|+++|..-.+.|.++++.-...... . +......+|.+++.+.- -.+.++..+..++..++.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 44678888999999999999999998866653322111 1 12223456777776542 123444444445554544
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=86.30 E-value=1.9 Score=33.35 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC-----CCCHHHHHHHHHcCCEEEEeC
Q 023801 17 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA-----SMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 17 ~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~-----~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
..+|+++.|||..+|--|+++|..-.+.|.+.++++.. ......+..++..|+++..+.
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~ 68 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAA 68 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEE
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccc
Confidence 35788888999999999999999999999875555532 223445677788999887764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.15 E-value=0.36 Score=30.83 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=38.0
Q ss_pred cEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 023801 23 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 76 (277)
Q Consensus 23 ~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~ 76 (277)
++|..-.+|..|+=++.+|+++|++++++-|...++... .-.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~~-----~a~dvIT~e~ 50 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVP-----FQQSVITAEI 50 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGSC-----GGGSEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcccc-----cccceEEEee
Confidence 357888999999999999999999999999876554321 1236776664
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.74 E-value=4 Score=31.74 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=47.9
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~--~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++.-|+++|..-.+.|.++++.-.... .....+.++.+|.+++.+.- -.+.++..+..++..++.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 346788888899999999999999998776544322 12345667788888776542 123444444445544443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=85.54 E-value=3.6 Score=31.96 Aligned_cols=70 Identities=21% Similarity=0.093 Sum_probs=43.3
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH----HH--HHcCCEEEEe--CCCCChHHHHHHHHHHHH
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI----IL--RAFGAELVLT--DPAKGMKGAVQKAEEILA 92 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~----~~--~~~Ga~v~~~--~~~~~~~~~~~~a~~~~~ 92 (277)
|+..|||..++.-|+++|..-.+.|.++++.-. +..+++ .+ ...+.+++.+ |- .+.++..+...+..+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r---~~~~l~~~~~~~~~~~~~~~~~~~~~Dv-t~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDV---SSEGLEASKAAVLETAPDAEVLTTVADV-SDEAQVEAYVTATTE 79 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHHHHHCTTCCEEEEECCT-TSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHHHhhCCCCeEEEEeccC-CCHHHHHHHHHHHHH
Confidence 347789999999999999999999988666532 223222 22 2246666554 32 244455555555555
Q ss_pred hC
Q 023801 93 KT 94 (277)
Q Consensus 93 ~~ 94 (277)
+.
T Consensus 80 ~~ 81 (258)
T d1iy8a_ 80 RF 81 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=85.49 E-value=3.6 Score=32.04 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|+..|||..++--|+++|....+.|.++++.
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~ 36 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIA 36 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4477889989999999999998888886654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.23 E-value=4.8 Score=31.19 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++.-|+++|..-.+.|.++++.-.... -......++..|.+++.+.- -.+.++..+...+..++.
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 447899999999999999999999988666432211 11223455667877765432 123444444555555544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.96 E-value=5 Score=31.00 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=46.3
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||.+++--|+++|..-.+.|.++++.-.... -....+.++..|.+++.+.. -.+.++..+...+..++.
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 447889999999999999999999988766532211 12234456777877765432 123444444445544443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.26 E-value=5.2 Score=31.74 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|+..|||.+++.-|+++|..-.+.|.++++.
T Consensus 12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~ 42 (297)
T d1yxma1 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIA 42 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4578999999999999999999999886665
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=83.50 E-value=4.1 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|+..|||..++--|+++|..-.+.|.++++.
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~ 36 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMIT 36 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4477888888999999998888888886655
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.09 E-value=1.1 Score=30.95 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=36.7
Q ss_pred EEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 023801 25 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 75 (277)
Q Consensus 25 vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~ 75 (277)
++....|+.|+.+|-.-...|.+++++ +..+.+.+.++..|..++.-+
T Consensus 3 ~iIiG~G~~G~~la~~L~~~g~~vvvi---d~d~~~~~~~~~~~~~~~~gd 50 (134)
T d2hmva1 3 FAVIGLGRFGGSIVKELHRMGHEVLAV---DINEEKVNAYASYATHAVIAN 50 (134)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCCEEE---ESCHHHHHHTTTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEe---cCcHHHHHHHHHhCCcceeee
Confidence 677789999999999999999998887 335567777766666655443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=82.58 E-value=5.3 Score=30.82 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=32.9
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHH-HHHHcCCEEEEeC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-ILRAFGAELVLTD 75 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~-~~~~~Ga~v~~~~ 75 (277)
|+..|||..++--|+++|..-...|.++++. . .++.+++ ..+.+|.+.+.+.
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~-~--~~~~~~~~~~~~~~~~~~~~~ 58 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFS-D--INEAAGQQLAAELGERSMFVR 58 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEE-C--SCHHHHHHHHHHHCTTEEEEC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE-E--CCHHHHHHHHHHhCCCeEEEE
Confidence 3467888888889999998888888875553 2 2333333 2344565555443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=82.46 E-value=3.6 Score=31.92 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=51.1
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCC-HHHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD-PAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~-~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~ 94 (277)
|++.|||..++.-|+++|....+.|.+++++-..... ....+.++..|.+++... +-.+.++..+...+..++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999987776543211 234567788888886543 1134455555556666665
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.39 E-value=3.2 Score=32.10 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||.+++.-|+++|..-.+.|.++++.-... .+.+..+..+...+.+|-. +.++..+...+..++.
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~---~~~~~~~~~~~~~~~~Dv~-~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP---EGKEVAEAIGGAFFQVDLE-DERERVRFVEEAAYAL 74 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST---THHHHHHHHTCEEEECCTT-CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCeEEEEeCC-CHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999876653322 3455667889998888753 5555555566665554
|
| >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein MTH1675 species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.05 E-value=3.6 Score=30.19 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEe-------CC--CCCHHHHHHHHHcCCEEEE
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-------PA--SMSLERRIILRAFGAELVL 73 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvv-------p~--~~~~~~~~~~~~~Ga~v~~ 73 (277)
+.....+++|.|.|- + ..||.+|+|.++..++=+ +.-+.++|. |. ..++..++.++..|.+|+.
T Consensus 18 ~~l~~a~~ra~elgi-~---~iVvAStsG~TA~~~~e~---~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 90 (186)
T d1t57a_ 18 RVLELVGERADQLGI-R---NFVVASVSGETALRLSEM---VEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 90 (186)
T ss_dssp HHHHHHHHHHHHHTC-C---EEEEECSSSHHHHHHHTT---CCSEEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCC-C---eEEEEeCCcHHHHHHHHh---cCCCEEEEecccCCCCCCCCccCHHHHHHHHHcCCEEEE
Confidence 345566788888885 2 445555669998766433 344654443 11 3467889999999999987
Q ss_pred eCC
Q 023801 74 TDP 76 (277)
Q Consensus 74 ~~~ 76 (277)
...
T Consensus 91 ~tH 93 (186)
T d1t57a_ 91 GSH 93 (186)
T ss_dssp CSC
T ss_pred ecc
Confidence 764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.78 E-value=5.7 Score=30.85 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=14.9
Q ss_pred EEEeeCCchHHHHHHHHH---HHCCCeEEEEe
Q 023801 24 VLIEPTSGNTGIGLAFMA---AAKQYRLIITM 52 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa---~~~Gl~~~vvv 52 (277)
+|+.-|+||.|+..+.+- ++.|.++++..
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~ 35 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTA 35 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEE
Confidence 365556666666555443 22355555443
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=81.63 E-value=9.2 Score=29.34 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=31.8
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHH
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII 63 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~ 63 (277)
|+..|||.+++--|.++|..-.+.|.+++++.........+..
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~ 47 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHH
Confidence 4477888888888999999888899988887655444444433
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.42 E-value=3.9 Score=31.56 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEE
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 51 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vv 51 (277)
|+..|||.+++--|+++|....+.|.++++.
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~ 33 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALV 33 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4477899999999999999999999886665
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=80.82 E-value=10 Score=29.12 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=47.0
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++--|+++|..-.+.|.++++.-.... -......++..|.+++.+.. -.+.++..+...+..++.
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 557899999999999999999999998766532211 11224456677877765432 124444445555555554
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=80.76 E-value=7.9 Score=29.68 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=45.9
Q ss_pred EEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCC-CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC
Q 023801 24 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDP-AKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 24 ~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~~~~~~ 94 (277)
.|||.+++--|+++|..-.+.|.++++.-.... -....+.++..|.+++.+.- -.+.++..+...+..++.
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 76 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 488899999999999999999998766532211 11224456777887765532 134455555556665655
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=80.51 E-value=2.2 Score=33.46 Aligned_cols=52 Identities=12% Similarity=-0.103 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCC
Q 023801 3 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 54 (277)
Q Consensus 3 R~a~~~v~~a~~~g~l~~g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~ 54 (277)
|++.+.++.+++.........+|+....||-|..+|......|.+++.+-..
T Consensus 17 ~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~ 68 (255)
T d1bgva1 17 YGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP 68 (255)
T ss_dssp HHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 5677888887765544444467999999999999999999999998876543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.31 E-value=11 Score=28.95 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=45.0
Q ss_pred CCcEEEeeCCchHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHcCCEE--EEeCCCCChHHHHHHHHHHHHhC
Q 023801 21 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL--VLTDPAKGMKGAVQKAEEILAKT 94 (277)
Q Consensus 21 g~~~vv~aSsGN~g~a~A~aa~~~Gl~~~vvvp~~~~~~~~~~~~~~Ga~v--~~~~~~~~~~~~~~~a~~~~~~~ 94 (277)
|+..|||..++.-|+++|....+.|.++++.- .++.+++.+...+.++ +.+|- .+.++..+..++..++.
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~---r~~~~~~~~~~~~~~~~~~~~Dv-s~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQELPGAVFILCDV-TQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHCTTEEEEECCT-TSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhcCCCeEEEccC-CCHHHHHHHHHHHHHhc
Confidence 44789999999999999999999999877652 3445555554433333 33333 34555555555555544
|