Citrus Sinensis ID: 023857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
Secondary Structure (PSIPRED)
cccccccccccccHHcccccccccEEEcccccccccccccccccccEEEEccccHHHHHHHHHccccEEEccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHccccccccEEEEcccccccHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEcccccccccHEcccccccccccccEEEcccccEEEEEHHHcEEEEcccccccEEEccccccccEEEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccEEEEccEEEEHHHcEEEEEEEccEEEEEEcccccHHHHHHHHHHcccccccEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mathfsstgpmrsifqlksnppkcllflpdschrraetatcrassvsvrqwssaanySRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFnsvrtgrsnpamlDKIEVEyygspvslksiaqintpdssslliqpydksslKSIEKAIVSsdlgmtpnndgevirltlpqltSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
Flexible Loop (DISEMBL)
mathfsstgpmrsifqLKSNPPKCLLFLPDSCHRRAETATcrassvsvrqwssaanysrlvklsnKPIVVrqlahkrngvvrcatieeieaekssiekdvKARMERTIDmvrtnfnsvrtgrsnpamLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSsdlgmtpnndgeVIRLtlpqltserRKELSKVvakqaeegkvavrnIRRDALKAYEKLqkekklsednvkdlssdlqkltdeYMKKIDSiykqkekellkv
Low Complexity Region (SEG)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATieeieaekssiekDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
Disordered region (IsUnstruct)
*********************PKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEI********************MVRT*F***********MLDKIEVEYYGSPVSLKSIA**********************************************************************************************************************************
Disordered Region (DISOPRED)
**************F***SNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI***V*ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ***********DLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
Disordered Region (DISEMBL)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRR***************WSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTS*************AEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV
Disordered Region (DISPRO)
*********PMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATxxxxxxxxxxxxxxxxxxxxxTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYMKKIDSIYKQKEKELLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9M1X0	275	Ribosome-recycling factor	yes	no	0.978	0.981	0.683	1e-100
P82231	271	Ribosome-recycling factor	N/A	no	0.851	0.867	0.720	2e-95
P37706	227	Ribosome-recycling factor	N/A	no	0.807	0.982	0.721	9e-93
A3BLC3	266	Ribosome-recycling factor	yes	no	0.811	0.842	0.686	1e-85
A2YMU2	266	Ribosome-recycling factor	N/A	no	0.811	0.842	0.686	1e-85
Q2JHW2	182	Ribosome-recycling factor	yes	no	0.634	0.961	0.577	1e-55
Q8DM64	182	Ribosome-recycling factor	yes	no	0.644	0.978	0.550	8e-55
Q8YXK4	182	Ribosome-recycling factor	yes	no	0.634	0.961	0.548	5e-53
Q5N3B7	182	Ribosome-recycling factor	yes	no	0.644	0.978	0.528	9e-53
Q31QY0	182	Ribosome-recycling factor	yes	no	0.644	0.978	0.528	9e-53

>sp|Q9M1X0|RRFC_ARATH Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 228/281 (81%), Gaps = 11/281 (3%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
           MA  FSST P   + + ++N  K LL LPDSC R   +A     S S R  + +    +L
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56

Query: 61  -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
                V LS  P+V R L  ++  V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57  PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
           SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+K
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEK 234

Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           EKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 235 EKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1

 Score =  348 bits (894), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/240 (72%), Positives = 207/240 (86%), Gaps = 5/240 (2%)

Query: 41  CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI 96
           C  +  +V  W S+ANY R+     K S K +VV+QL   R G  RCAT+EE+EAEKS I
Sbjct: 33  CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQL-QNRAGTFRCATMEEVEAEKSLI 91

Query: 97  EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
           E + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSL
Sbjct: 92  ETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSL 151

Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
           LI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGK
Sbjct: 152 LISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGK 211

Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS+DLQKLTDEYMKK++SIYKQKE+EL+KV
Sbjct: 212 VAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKEQELMKV 271

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Spinacia oleracea (taxid: 3562)

>sp|P37706|RRFC_DAUCA Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2

 Score =  340 bits (871), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 166/230 (72%), Positives = 203/230 (88%), Gaps = 7/230 (3%)

Query: 51  WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
           W++AANY ++     K + K +V   L+ KR G ++CAT+EEIEAEKS IEK VK RME+
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 57

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
           TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSL
Sbjct: 58  TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 117

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
           K IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA
Sbjct: 118 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDA 177

Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +K+Y+KL+KEKKLSEDNVKDLSSDLQK+ DEY+KK+DSI+KQKEKEL+ V
Sbjct: 178 IKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Daucus carota (taxid: 4039)

>sp|A3BLC3|RRFC_ORYSJ Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 200/230 (86%), Gaps = 6/230 (2%)

Query: 51  WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
            SS+ N+  L    ++  ++P+++ Q + KR  V+R ATIEEIEAEKS IE   + RME+
Sbjct: 39  LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
            I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97  AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
           K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDA 216

Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQKE+EL+K+
Sbjct: 217 IKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMU2|RRFC_ORYSI Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 200/230 (86%), Gaps = 6/230 (2%)

Query: 51  WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
            SS+ N+  L    ++  ++P+++ Q + KR  V+R ATIEEIEAEKS IE   + RME+
Sbjct: 39  LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
            I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97  AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDA 226
           K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDA 216

Query: 227 LKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +KAY+KL+KEKKLSEDNVKDLS+DLQK+TDEYMKKI++I KQKE+EL+K+
Sbjct: 217 IKAYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=frr PE=3 SV=1

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 139/175 (79%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           +++  M + +   + +FN+VRTGR+N ++LD+I+VEYYG P  LK++A + TPDSS+LLI
Sbjct: 5   EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V+
Sbjct: 65  QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVS 124

Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
           +RNIRRD + +  K +K  +LSED  K L  D+QKLTD Y+KKID +  +KEKEL
Sbjct: 125 IRNIRRDGIDSVRKREKNGELSEDESKSLQDDIQKLTDRYIKKIDELLAEKEKEL 179

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|Q8DM64|RRF_THEEB Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1

 Score =  213 bits (543), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 98/178 (55%), Positives = 141/178 (79%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV+ RM+++++  + +FNS+RTGR+N A+LD++ V+YYG+   L+S+A ++TPD++++LI
Sbjct: 5   DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           QPYD+S+L SIEKAI  SDLG+TPNNDG  +RL +P LT+ERRKEL K  AK AE GKVA
Sbjct: 65  QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124

Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +RNIRRDA+   +K  K  +L+ED VKDL   +QKLTD+Y+ KID++  +KEK+++ V
Sbjct: 125 IRNIRRDAIDHIKKAGKAGELTEDEVKDLQEKVQKLTDKYIGKIDALLAEKEKDIMTV 182

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|Q8YXK4|RRF_NOSS1 Ribosome-recycling factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=frr PE=3 SV=1

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 138/175 (78%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + +++M+ T++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD++++LI
Sbjct: 5   EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           QPYDKSSL  +EKAI  SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA
Sbjct: 65  QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124

Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
           +RNIRRDA+ +  KL+K  ++SED  KD    LQKLT++Y  +ID +  +KEK++
Sbjct: 125 IRNIRRDAVDSIRKLEKNAEVSEDEAKDQQDKLQKLTNKYTARIDELLVEKEKDI 179

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q5N3B7|RRF_SYNP6 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1

 Score =  207 bits (526), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 141/178 (79%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L I
Sbjct: 5   DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           QP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65  QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124

Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +   KEK+++ V
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q31QY0|RRF_SYNE7 Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1

 Score =  207 bits (526), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 141/178 (79%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L I
Sbjct: 5   DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           QP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA
Sbjct: 65  QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124

Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           +RN+RRDA+ +  KL+K  ++SED+ +D    +QKLTD++  K++ +   KEK+++ V
Sbjct: 125 IRNVRRDAIDSIRKLEKSGEISEDDARDQQDQVQKLTDKFSAKVEQLLSDKEKDIMTV 182

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
118489544	286	unknown [Populus trichocarpa x Populus d	0.963	0.930	0.758	1e-112
224066503	286	predicted protein [Populus trichocarpa]	0.963	0.930	0.750	1e-110
449444671	278	PREDICTED: ribosome-recycling factor, ch	0.989	0.982	0.747	1e-107
296085196	274	unnamed protein product [Vitis vinifera]	0.978	0.985	0.717	1e-105
225437014	280	PREDICTED: ribosome-recycling factor, ch	0.985	0.971	0.708	1e-102
356536011	256	PREDICTED: LOW QUALITY PROTEIN: ribosome	0.916	0.988	0.701	1e-102
297821238	275	hypothetical protein ARALYDRAFT_907901 [	0.978	0.981	0.683	1e-100
359806687	261	uncharacterized protein LOC100794560 [Gl	0.923	0.977	0.680	1e-99
388499912	262	unknown [Medicago truncatula]	0.949	1.0	0.681	2e-99
357440723	262	Ribosome-recycling factor [Medicago trun	0.949	1.0	0.681	2e-99

>gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/273 (75%), Positives = 233/273 (85%), Gaps = 7/273 (2%)

Query: 11  MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
           +RSIFQ   NPPK LL L  S HR   RA+       + SV  WSS+ANYS L     KL
Sbjct: 14  LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVGYNSIGAASVSLWSSSANYSSLRNGSSKL 73

Query: 64  SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
           S KP+ V++L   R GVVR ATIEEIEAEKS IE D K RME+TID +RTNFNSVRTGR+
Sbjct: 74  SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRTNFNSVRTGRA 133

Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
           NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193

Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 243
           NDGEVIR+++PQLTSERRKELSK+VAK AEEGKVA+RNIRRDALKAYEKL+KEKKLSEDN
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIRRDALKAYEKLEKEKKLSEDN 253

Query: 244 VKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VKDLSSDLQKLTDEYMKK+D+I+KQKEKELLKV
Sbjct: 254 VKDLSSDLQKLTDEYMKKLDNIFKQKEKELLKV 286

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa] gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/273 (75%), Positives = 232/273 (84%), Gaps = 7/273 (2%)

Query: 11  MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
           +RSIFQ   NPPK LL L  S HR   RA+       + SV  WSS+ANYS L     KL
Sbjct: 14  LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVCYNSIGATSVSLWSSSANYSSLRNGSTKL 73

Query: 64  SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
           S KP+ V++L   R GVVR ATIEEIEAEKS IE D K RME+TID +R NFNSVRTGR+
Sbjct: 74  SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRANFNSVRTGRA 133

Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
           NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193

Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 243
           NDGEVIR+++PQLTSERRKELSK+VAK AEEGKVA+RNIRRDALKAYEKL+KEKKLSEDN
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVALRNIRRDALKAYEKLEKEKKLSEDN 253

Query: 244 VKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VKDLSSDLQKLTDEYMKK+++I+KQKEKELLKV
Sbjct: 254 VKDLSSDLQKLTDEYMKKLENIFKQKEKELLKV 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444671|ref|XP_004140097.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/281 (74%), Positives = 234/281 (83%), Gaps = 8/281 (2%)

Query: 1   MATHFSSTGPMR-SIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 59
           MAT FS+T  +R S+FQ  + PPK LL L D  +       C + +  +  W SA+NY R
Sbjct: 1   MATPFSATASIRRSLFQ--NPPPKSLLSLRD-YNGGLNCVKCGSITAHLCSWKSASNYVR 57

Query: 60  L----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
           L    + +S +  V   +   R  VVR ATIEEIEAEK+ IEKDVKARME+TID VR+NF
Sbjct: 58  LNRQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 117

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+
Sbjct: 118 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 177

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
           SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKL+K
Sbjct: 178 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEK 237

Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           EKKLSEDNVKDLSSDLQKLTD+YMKKID +YKQKEKELLKV
Sbjct: 238 EKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/280 (71%), Positives = 229/280 (81%), Gaps = 10/280 (3%)

Query: 1   MATHFSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAAN 56
           MA  FS   P+R+IFQ KS +P  C    P  + CH     A T R+++  VR    A  
Sbjct: 1   MAMTFSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGARE 60

Query: 57  YSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFN 116
           YS       K  V ++   KR G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFN
Sbjct: 61  YS------GKLFVAKRNFQKRTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFN 114

Query: 117 SVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS 176
           S+RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSS
Sbjct: 115 SIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSS 174

Query: 177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKE 236
           DLG+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKVA+RNIRRDALKAYEKL+K+
Sbjct: 175 DLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIRRDALKAYEKLEKD 234

Query: 237 KKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           KKLSEDNVKDLSSDLQKL DEYMKKI++IYKQKEKELLKV
Sbjct: 235 KKLSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437014|ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/278 (70%), Positives = 229/278 (82%), Gaps = 6/278 (2%)

Query: 5   FSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAANYSRL 60
           FS   P+R+IFQ KS +P  C    P  + CH     A T R+++  VR    A  YS  
Sbjct: 3   FSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGK 62

Query: 61  VKLSNKPIVVRQLA--HKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSV 118
           + ++ +    RQ+     + G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFNS+
Sbjct: 63  LFVAKRNFQKRQVESYGYKTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFNSI 122

Query: 119 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDL 178
           RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSSDL
Sbjct: 123 RTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSSDL 182

Query: 179 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKK 238
           G+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKVA+RNIRRDALKAYEKL+K+KK
Sbjct: 183 GLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVALRNIRRDALKAYEKLEKDKK 242

Query: 239 LSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           LSEDNVKDLSSDLQKL DEYMKKI++IYKQKEKELLKV
Sbjct: 243 LSEDNVKDLSSDLQKLIDEYMKKIETIYKQKEKELLKV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536011|ref|XP_003536534.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor, chloroplastic-like [Glycine max]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/275 (70%), Positives = 225/275 (81%), Gaps = 22/275 (8%)

Query: 2   ATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLV 61
           +T FS T  +RSI   K NPPK LL L                    R ++S+A+Y+ L 
Sbjct: 4   STSFSPTASVRSIIFQKQNPPKALLLLSQQ-----------------RSFASSASYATL- 45

Query: 62  KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
           KL  +P+    L+  R  +VR ATIEEIEAEK++IEKD K+RM+RTID VRTNF+S+RTG
Sbjct: 46  KLPRRPL----LSXGRTPLVRAATIEEIEAEKAAIEKDAKSRMDRTIDNVRTNFSSIRTG 101

Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
           R+NPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEK IVSSDLGMT
Sbjct: 102 RANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKTIVSSDLGMT 161

Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSE 241
           PNNDGE I+L +PQLTS+RRKELSK+VAKQAEEGKVA+RNIRRDALKAY+KL+KEKKLSE
Sbjct: 162 PNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLEKEKKLSE 221

Query: 242 DNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           DNVKDLSSDLQKLTDEYMKK+D+I+KQKEKELL V
Sbjct: 222 DNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821238|ref|XP_002878502.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] gi|297324340|gb|EFH54761.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 226/281 (80%), Gaps = 11/281 (3%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCR-----ASSVSVRQWSSAA 55
           MA  FSS  P   + Q ++N  K +L LPDSC R   +A C      A S+   +    A
Sbjct: 1   MAASFSSIAPTTPVLQFRANYSKSILSLPDSCLRIISSARCPSARLIACSLKTEKLPLGA 60

Query: 56  NYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
                V LS  P+V R L  ++  V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 61  G----VNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQK 235
           SDLG+TPNNDG+VIRL+LP LTSERRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+K
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSERRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEK 234

Query: 236 EKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           EKKLSEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct: 235 EKKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806687|ref|NP_001241288.1| uncharacterized protein LOC100794560 [Glycine max] gi|255638439|gb|ACU19529.1| unknown [Glycine max]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 192/282 (68%), Positives = 226/282 (80%), Gaps = 27/282 (9%)

Query: 1   MATHFSSTGPMRSI-FQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYS- 58
           MAT FS T  + SI FQ   NPPK                   +     R ++S+A+Y+ 
Sbjct: 1   MATSFSPTASVGSIIFQ---NPPKG--------------LLLLSQQQQQRSFASSASYAT 43

Query: 59  ----RLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTN 114
               R   LS +P+    L+  R  +VR ATIEEIEAEK++IEKD K RM+RTID VRTN
Sbjct: 44  LKLPRAFALSPRPL----LSKGRTTLVRAATIEEIEAEKAAIEKDAKTRMDRTIDNVRTN 99

Query: 115 FNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV 174
           F+S+RTGR+NP+MLDKI+VEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIV
Sbjct: 100 FSSIRTGRANPSMLDKIQVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIV 159

Query: 175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQ 234
           SSDLGMTPNNDGE+IRL++PQLTS+RRKELSK+VAKQAEEGKVA+RNIRRDALKAY+KL+
Sbjct: 160 SSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIRRDALKAYDKLE 219

Query: 235 KEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           KEKKLSEDNVKDLSSDLQKLTDEYMKK+D+I+KQKEKELL V
Sbjct: 220 KEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKELLTV 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499912|gb|AFK38022.1| unknown [Medicago truncatula]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/276 (68%), Positives = 226/276 (81%), Gaps = 14/276 (5%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
           MAT FSST P+RSIFQ     PK LL    S H  +     R+S+    + S +  +S  
Sbjct: 1   MATSFSSTTPLRSIFQNLPVVPKALL----SAH--SSFTIKRSSTYVTLKLSGSGRHS-- 52

Query: 61  VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
             LS   + +    H R G VR ATIEEIEAEK+SIE DVK+RMERT+D V+TNF+S+RT
Sbjct: 53  --LSKGLLTL----HTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRT 106

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
           GR+ P+MLDKIEVEYYGSPVSLK+IAQI+TPD+SSLL+ PYDKSSLK+IEKAIV+SD+GM
Sbjct: 107 GRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGM 166

Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
           TPNNDGEVIRL++PQLTS+RRKEL+K+V+KQ EEGKVA+RNIRRDALKAYEKL+K+KKLS
Sbjct: 167 TPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLS 226

Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           EDNVKDLSSDLQKLTD+Y+KK+D++YKQKEKELL V
Sbjct: 227 EDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440723|ref|XP_003590639.1| Ribosome-recycling factor [Medicago truncatula] gi|217072182|gb|ACJ84451.1| unknown [Medicago truncatula] gi|217072782|gb|ACJ84751.1| unknown [Medicago truncatula] gi|355479687|gb|AES60890.1| Ribosome-recycling factor [Medicago truncatula]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/276 (68%), Positives = 226/276 (81%), Gaps = 14/276 (5%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
           MAT FSST P+RSIFQ     PK LL    S H  +     R+S+    + S +  +S  
Sbjct: 1   MATSFSSTTPLRSIFQNLPIVPKALL----SAH--SSFTIKRSSTYVTLKLSGSGRHS-- 52

Query: 61  VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRT 120
             LS   + +    H R G VR ATIEEIEAEK+SIE DVK+RMERT+D V+TNF+S+RT
Sbjct: 53  --LSKGLLTL----HTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVKTNFSSIRT 106

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGM 180
           GR+ P+MLDKIEVEYYGSPVSLK+IAQI+TPD+SSLL+ PYDKSSLK+IEKAIV+SD+GM
Sbjct: 107 GRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGM 166

Query: 181 TPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLS 240
           TPNNDGEVIRL++PQLTS+RRKEL+K+V+KQ EEGKVA+RNIRRDALKAYEKL+K+KKLS
Sbjct: 167 TPNNDGEVIRLSIPQLTSDRRKELTKIVSKQVEEGKVALRNIRRDALKAYEKLEKDKKLS 226

Query: 241 EDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           EDNVKDLSSDLQKLTD+Y+KK+D++YKQKEKELL V
Sbjct: 227 EDNVKDLSSDLQKLTDDYIKKVDALYKQKEKELLTV 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2077254	275	RRF ""ribosome recycling facto	0.992	0.996	0.646	1.7e-84
TIGR_CMR|CHY_1784	185	CHY_1784 "ribosome recycling f	0.644	0.962	0.477	5.7e-43
TIGR_CMR|GSU_1918	185	GSU_1918 "ribosome recycling f	0.644	0.962	0.443	5.7e-43
TIGR_CMR|BA_3962	185	BA_3962 "ribosome recycling fa	0.630	0.940	0.477	1.5e-42
TIGR_CMR|DET_0374	185	DET_0374 "ribosome recycling f	0.630	0.940	0.465	2.8e-41
TIGR_CMR|CPS_1556	185	CPS_1556 "ribosome recycling f	0.644	0.962	0.443	2.6e-40
UNIPROTKB|P0A805	185	frr "ribosome recycling factor	0.641	0.956	0.451	6.8e-40
TIGR_CMR|SO_1632	185	SO_1632 "ribosome recycling fa	0.644	0.962	0.432	1.1e-39
UNIPROTKB|P66734	185	frr "Ribosome-recycling factor	0.644	0.962	0.432	2.9e-39
TIGR_CMR|VC_2257	185	VC_2257 "ribosome recycling fa	0.644	0.962	0.438	7.8e-39

TAIR|locus:2077254 RRF ""ribosome recycling factor, chloroplast precursor"" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 179/277 (64%), Positives = 214/277 (77%)

Query:     1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSS-AANYSR 59
             MA  FSST P   + + ++N  K LL LPDSC R   +A   ++ +    + +       
Sbjct:     1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAISPSTRLIACSFKTDKLPLGA 60

Query:    60 LVKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVR 119
              V LS  P+V R L  KR  V+R AT             DVK++ME+TI+ +RT+FNS+R
Sbjct:    61 GVNLSGGPVVKRSL-QKRL-VIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIR 118

Query:   120 TGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLG 179
             TGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG
Sbjct:   119 TGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLG 178

Query:   180 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKL 239
             +TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKL
Sbjct:   179 VTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKL 238

Query:   240 SEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             SEDNVKDLSSDLQKL D YMKKI+ +YKQKEKEL+KV
Sbjct:   239 SEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0032544 "plastid translation" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TIGR_CMR|CHY_1784 CHY_1784 "ribosome recycling factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 85/178 (47%), Positives = 129/178 (72%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             + +  M++ I++++  F ++R GR+ PA+L+K+ VEYYG+ + +  +A I+ P+   L+I
Sbjct:     8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             QP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+AEE +VA
Sbjct:    68 QPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             +RNIRRDA    + L+K+K +SED  K    ++QKLTD+++K +D + K KE E+L +
Sbjct:   128 IRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEILSI 185

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|GSU_1918 GSU_1918 "ribosome recycling factor" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 79/178 (44%), Positives = 132/178 (74%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D+K+ ME++++ +R  +  VRTGR+N  +LD+I V++YG+P  L  +A +  P+  ++ I
Sbjct:     8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             QP++   +  IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+A
Sbjct:    68 QPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             +RNIRRDA+   +KL+K+KK+SED++K    ++Q +T+ Y+ K+D +   KEKE+++V
Sbjct:   128 IRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVMEV 185

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|BA_3962 BA_3962 "ribosome recycling factor" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 83/174 (47%), Positives = 126/174 (72%)

Query:   103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
             +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYD
Sbjct:    12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71

Query:   163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
             K+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+
Sbjct:    72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 131

Query:   223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct:   132 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 185

GO:0006415 "translational termination" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|DET_0374 DET_0374 "ribosome recycling factor" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 81/174 (46%), Positives = 125/174 (71%)

Query:   103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
             +M  ++D++    + +RTGRS+PA+++ I+VEY G P  +  +A I  PD   + IQP+D
Sbjct:    12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWD 71

Query:   163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
             +S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+
Sbjct:    72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNV 131

Query:   223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             RRDA+   +KL+K K++S+D++K  S  LQK+TD ++ K D +   KE EL +V
Sbjct:   132 RRDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQV 185

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|CPS_1556 CPS_1556 "ribosome recycling factor" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 79/178 (44%), Positives = 125/178 (70%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM ++I+ ++T+   +RTGR++ ++LD I VEYYG    L  +  ++ PD+ +L I
Sbjct:     8 DAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
               +DKS + ++EKAI+ SDLG+ P ++G +IR+ LP LT ERRK+L KVV  +AE GKVA
Sbjct:    68 TVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGKVA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             +RNIRRDA   ++ L KEK++SED+       +QK+TD ++K++D +  +KE EL+++
Sbjct:   128 IRNIRRDANSDFKSLLKEKEISEDDHHQAEDSIQKITDVFVKQVDEVLVKKEAELMEI 185

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|P0A805 frr "ribosome recycling factor" [Escherichia coli K-12 (taxid:83333)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/177 (45%), Positives = 125/177 (70%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct:     8 DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
               +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VA
Sbjct:    68 NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
             VRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL++
Sbjct:   128 VRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184

GO:0043022 "ribosome binding" evidence=IDA

GO:0032790 "ribosome disassembly" evidence=IMP

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

TIGR_CMR|SO_1632 SO_1632 "ribosome recycling factor" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 77/178 (43%), Positives = 123/178 (69%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +
Sbjct:     8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSV 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
               +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA
Sbjct:    68 TVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             +RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I   KE EL++V
Sbjct:   128 IRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELMEV 185

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|P66734 frr "Ribosome-recycling factor" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/178 (43%), Positives = 121/178 (67%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  ++I
Sbjct:     8 DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             +PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+
Sbjct:    68 KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K KE ELL+V
Sbjct:   128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV 185

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006415 "translational termination" evidence=IDA

GO:0008079 "translation termination factor activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|VC_2257 VC_2257 "ribosome recycling factor" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 78/178 (43%), Positives = 123/178 (69%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RME++++ ++   + +RTGR++P++L  I V+YYG+P  L  +A +   D+ +L I
Sbjct:     8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
               +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+VA
Sbjct:    68 TVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVA 127

Query:   219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
             VRNIRRDA    + L K+K++SED+ +    ++QKLTD  +KKID +   KEKEL++V
Sbjct:   128 VRNIRRDANNDLKALLKDKEISEDDERRAQEEIQKLTDAAVKKIDDVLAAKEKELMEV 185

GO:0006417 "regulation of translation" evidence=ISS

GO:0045182 "translation regulator activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8DM64	RRF_THEEB	No assigned EC number	0.5505	0.6449	0.9780	yes	no
A2BQ02	RRF_PROMS	No assigned EC number	0.5111	0.6521	0.9890	yes	no
A7Z4S3	RRF_BACA2	No assigned EC number	0.5170	0.6376	0.9513	yes	no
A2BVI3	RRF_PROM5	No assigned EC number	0.5111	0.6521	0.9890	yes	no
A5D2T8	RRF_PELTS	No assigned EC number	0.5027	0.6485	0.9675	yes	no
Q1WUG4	RRF_LACS1	No assigned EC number	0.5166	0.6521	0.9625	yes	no
Q5N3B7	RRF_SYNP6	No assigned EC number	0.5280	0.6449	0.9780	yes	no
Q5WFT1	RRF_BACSK	No assigned EC number	0.5193	0.6557	0.9783	yes	no
A0AIB5	RRF_LISW6	No assigned EC number	0.5113	0.6376	0.9513	yes	no
Q0I8L4	RRF_SYNS3	No assigned EC number	0.5056	0.6449	0.9780	yes	no
A2YMU2	RRFC_ORYSI	No assigned EC number	0.6869	0.8115	0.8421	N/A	no
P81101	RRF_BACSU	No assigned EC number	0.5170	0.6376	0.9513	yes	no
Q8YXK4	RRF_NOSS1	No assigned EC number	0.5485	0.6340	0.9615	yes	no
B1XJ13	RRF_SYNP2	No assigned EC number	0.5224	0.6449	0.9780	yes	no
P82231	RRFC_SPIOL	No assigned EC number	0.7208	0.8514	0.8671	N/A	no
A3BLC3	RRFC_ORYSJ	No assigned EC number	0.6869	0.8115	0.8421	yes	no
Q7V6C1	RRF_PROMM	No assigned EC number	0.5083	0.6485	0.9835	yes	no
B1X0Q1	RRF_CYAA5	No assigned EC number	0.5056	0.6449	0.9780	yes	no
Q2JHW2	RRF_SYNJB	No assigned EC number	0.5771	0.6340	0.9615	yes	no
A9BEE4	RRF_PROM4	No assigned EC number	0.5138	0.6557	0.9945	yes	no
Q65JJ6	RRF_BACLD	No assigned EC number	0.5081	0.6630	0.9891	yes	no
Q9M1X0	RRFC_ARATH	No assigned EC number	0.6832	0.9782	0.9818	yes	no
A8G3N6	RRF_PROM2	No assigned EC number	0.5055	0.6521	0.9890	yes	no
B8HL79	RRF_CYAP4	No assigned EC number	0.5428	0.6340	0.9615	yes	no
C5D9B8	RRF_GEOSW	No assigned EC number	0.5056	0.6376	0.9513	yes	no
B0JKT7	RRF_MICAN	No assigned EC number	0.5112	0.6449	0.9780	yes	no
Q46GQ5	RRF_PROMT	No assigned EC number	0.5251	0.6485	0.9835	yes	no
Q7V2F9	RRF_PROMP	No assigned EC number	0.5166	0.6521	0.9890	yes	no
Q31QY0	RRF_SYNE7	No assigned EC number	0.5280	0.6449	0.9780	yes	no
Q7NNX0	RRF_GLOVI	No assigned EC number	0.5202	0.6268	0.9505	yes	no
Q0AYK1	RRF_SYNWW	No assigned EC number	0.5393	0.6449	0.9621	yes	no
Q10Y49	RRF_TRIEI	No assigned EC number	0.5251	0.6485	0.9835	yes	no
Q8DSY2	RRF_STRMU	No assigned EC number	0.5136	0.6630	0.9891	yes	no
P37706	RRFC_DAUCA	No assigned EC number	0.7217	0.8079	0.9823	N/A	no
B2IVW4	RRF_NOSP7	No assigned EC number	0.5193	0.6557	0.9945	yes	no
Q9KA66	RRF_BACHD	No assigned EC number	0.5112	0.6449	0.9621	yes	no
A2C0Y0	RRF_PROM1	No assigned EC number	0.5195	0.6485	0.9835	yes	no
B7K7R4	RRF_CYAP7	No assigned EC number	0.5280	0.6449	0.9780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	2e-93
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	9e-81
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	2e-78
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	4e-76
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	1e-67

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score =  273 bits (700), Expect = 2e-93
 Identities = 100/181 (55%), Positives = 139/181 (76%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I KD + RME+ ++ ++     +RTGR+NP++LD I+V+YYGSP  L  +A I+ P++ +
Sbjct: 5   ILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           LLIQP+DKS LK+IEKAI +SDLG+ P+NDG VIRL +P LT ERRKEL K V K+AEE 
Sbjct: 65  LLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEA 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           KVA+RNIRRDA    +KL+K+K++SED +K    ++QKLTD+Y+KKID +   KEKE+++
Sbjct: 125 KVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKEIME 184

Query: 276 V 276
           V
Sbjct: 185 V 185

Length = 185

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score =  241 bits (617), Expect = 9e-81
 Identities = 101/187 (54%), Positives = 142/187 (75%)

Query: 90  EAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQIN 149
               + I KD + +ME+ ++ ++   + +RTGR+NP++LD+I VEYYGSP  L  +A I+
Sbjct: 1   MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60

Query: 150 TPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVA 209
            P++ +L+I+P+DKS +K+IEKAI++S+LG+ PNNDG VIR+ LP LT ERRKEL KV  
Sbjct: 61  VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120

Query: 210 KQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK 269
           K AEE KVAVRNIRRDA    +KL+K+K++SED VK    ++QKLTDEY+KKID + K K
Sbjct: 121 KYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180

Query: 270 EKELLKV 276
           EKE+++V
Sbjct: 181 EKEIMEV 187

Length = 187

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score =  234 bits (600), Expect = 2e-78
 Identities = 91/163 (55%), Positives = 126/163 (77%)

Query: 112 RTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEK 171
           +   + +RTGR+NP++LD I V+YYGSP  L  +A I+ P++ +LLI P+DKS +K+IEK
Sbjct: 3   KKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIEK 62

Query: 172 AIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYE 231
           AI++SDLG+ P NDG+VIR+ +P LT ERRKEL K   K AEE KVA+RNIRRDA    +
Sbjct: 63  AILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKLK 122

Query: 232 KLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           KL+K+K++SED VK    ++QKLTD+Y+KKID + K+KEKE++
Sbjct: 123 KLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEIM 165

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score =  229 bits (585), Expect = 4e-76
 Identities = 104/179 (58%), Positives = 137/179 (76%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I K+ K +ME++++ ++   N +RTGR+NPA+LD I VEYYG+P  L  +A I+ P+  +
Sbjct: 1   ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I P+DKS++K+IEKAI++SDLG+ PNNDG VIR+ LP LT ERRKEL K   K AEE 
Sbjct: 61  IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           KVA+RNIRRDA    +KL+KEK++SED VK    DLQKLTDEY+KKID + K KEKELL
Sbjct: 121 KVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score =  207 bits (528), Expect = 1e-67
 Identities = 97/176 (55%), Positives = 134/176 (76%)

Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
           K RM+++I  ++   + +RTGR+NP++LD+I VEYYG+P  L+ +A +  PD+ +L+IQP
Sbjct: 1   KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60

Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVR 220
           +DKS++ +IEKAI  SDLG+ PNNDG VIR+  P LT ERRKEL K   K AE+ KVAVR
Sbjct: 61  FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120

Query: 221 NIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           N+RRDA    +KL+K+K++SED  + L  ++QKLTDEY+KKID I K KEKEL++V
Sbjct: 121 NVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKELMEV 176

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	100.0
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	100.0
KOG4759	263	consensus Ribosome recycling factor [Translation,	100.0

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-61  Score=422.28  Aligned_cols=182  Identities=55%  Similarity=0.911  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++++++++|++++++|+++|++|||||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||.
T Consensus         6 ~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~IekaI~   85 (187)
T COG0233           6 EILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKAIL   85 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      +|||||||.+||++|||+||+||+|+|++|+|.|++++|++|++|||||||+++.+||++|++.||||++++++++||++
T Consensus        86 ~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKl  165 (187)
T COG0233          86 ASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKL  165 (187)
T ss_pred             HcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||++++.||||||+|
T Consensus       166 Td~yi~~iD~~~~~KEkEim~v  187 (187)
T COG0233         166 TDEYIKKIDELLKDKEKEIMEV  187 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=5.8e-60  Score=414.71  Aligned_cols=182  Identities=55%  Similarity=0.894  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||+++||++||+|++++|++|+|+|||++++++|++||+
T Consensus         4 ~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI~   83 (185)
T PRK00083          4 EILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAIR   83 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      +|||||||++||++|+|+||+||+|+|++++|.|++++|+||++|||||+++++.+|+++|++.+|||++++++++||++
T Consensus        84 ~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkl  163 (185)
T PRK00083         84 ASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKL  163 (185)
T ss_pred             HCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||||||+|
T Consensus       164 td~~i~~id~~~~~Kekeim~v  185 (185)
T PRK00083        164 TDKYIKKIDELLAAKEKEIMEV  185 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=6.4e-59  Score=405.26  Aligned_cols=175  Identities=55%  Similarity=0.907  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCC
Q 023857          102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT  181 (276)
Q Consensus       102 ~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~Lgln  181 (276)
                      ++|++++++|+++|+++|+||+||++||+|.|+|||+++||++||||+++++++|+|+|||++++++|++||.+||||||
T Consensus         2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln   81 (176)
T TIGR00496         2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN   81 (176)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHH
Q 023857          182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKK  261 (276)
Q Consensus       182 Pq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~  261 (276)
                      |++||++|+|+||+||+|+|++++|.|++++|+||++|||||+++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus        82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~  161 (176)
T TIGR00496        82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK  161 (176)
T ss_pred             cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcC
Q 023857          262 IDSIYKQKEKELLKV  276 (276)
Q Consensus       262 iD~l~k~KeKEll~v  276 (276)
                      ||+++++||||||+|
T Consensus       162 id~~~~~Kekeim~v  176 (176)
T TIGR00496       162 IDEILKDKEKELMEV  176 (176)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999986

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=100.00  E-value=1.8e-57  Score=396.93  Aligned_cols=178  Identities=58%  Similarity=0.919  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhC
Q 023857           97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS  176 (276)
Q Consensus        97 ~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S  176 (276)
                      +++++++|++++++|+++|+++|+||+||++||+|.|+|||+++||++||||+++|+++|+|+|||++++++|++||++|
T Consensus         2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s   81 (179)
T cd00520           2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS   81 (179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHH
Q 023857          177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD  256 (276)
Q Consensus       177 ~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd  256 (276)
                      |||+||++||++|+|+||+||+|+|++++|.|++.+|+||++|||||+++++.++++++++.+|||++++++++||++||
T Consensus        82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd  161 (179)
T cd00520          82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD  161 (179)
T ss_pred             CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 023857          257 EYMKKIDSIYKQKEKELL  274 (276)
Q Consensus       257 ~~ik~iD~l~k~KeKEll  274 (276)
                      +|+++||++++.||||||
T Consensus       162 ~~i~~id~~~~~Kekeim  179 (179)
T cd00520         162 EYIKKIDELLKSKEKELL  179 (179)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999999997

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=100.00  E-value=1.3e-51  Score=355.23  Aligned_cols=165  Identities=55%  Similarity=0.868  Sum_probs=160.5

Q ss_pred             HHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhCCCCCCccCCCCeE
Q 023857          110 MVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVI  189 (276)
Q Consensus       110 ~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S~LglnPq~Dg~~I  189 (276)
                      +|+++|+++|+||+||++||+|+|++||.++||++||||+++|+++|+|+|||++++++|++||++|+|||||+.||++|
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i   80 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI   80 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023857          190 RLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQK  269 (276)
Q Consensus       190 ~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~K  269 (276)
                      +|+||+||+|+|++++|.|++++|+||++||++|++++++++++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus        81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k  160 (165)
T PF01765_consen   81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK  160 (165)
T ss_dssp             EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh
Q 023857          270 EKELL  274 (276)
Q Consensus       270 eKEll  274 (276)
                      |||||
T Consensus       161 ekell  165 (165)
T PF01765_consen  161 EKELL  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            99997

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-48  Score=351.17  Aligned_cols=213  Identities=38%  Similarity=0.594  Sum_probs=189.7

Q ss_pred             ccccCchhhHhhhhhhccCCc-cccchhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCcc
Q 023857           61 VKLSNKPIVVRQLAHKRNGVV-RCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSP  139 (276)
Q Consensus        61 ~~fs~~~~~~kk~~~~k~~~~-~~~~~ee~~~~~~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~  139 (276)
                      +.|+.+ .++|+.+-++.+.. .....++.+.+...++.++..+|+++++.|+++|+++++||+||.+||.|.|+++|.+
T Consensus        49 ~~~~R~-~~~kkak~k~~~~~~~~~~in~~~~e~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~  127 (263)
T KOG4759|consen   49 RVFHRS-FLQKKAKLKKKKHDHGTEKINEAELEENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPK  127 (263)
T ss_pred             hhhhHH-HHHHHhhccccccCCchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCc
Confidence            444444 44444322233333 4444555555566678899999999999999999999999999999999999999999


Q ss_pred             ccccceeeeecCCCcEEEEeecC-CCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023857          140 VSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA  218 (276)
Q Consensus       140 ~pL~~lAqVsv~~~~tL~I~p~D-~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~  218 (276)
                      +||++|||||.+|+++|+|+||| |..+++|++||++|+||+||++||.+|+|+|||+|.|+|++|+|.+++++|++|++
T Consensus       128 ~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~s  207 (263)
T KOG4759|consen  128 RPLNEIAQVSLKGPQTILINPFDFPVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQS  207 (263)
T ss_pred             ccHHHHHHHhcCCCceEEEecccCchHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 023857          219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       219 IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||++|+++++.+++.++  .+++|+++++++++|+++|+|++++|++|+.||||||..
T Consensus       208 lr~ir~~~~kk~~k~~~--~~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKellk~  263 (263)
T KOG4759|consen  208 LRKIRTKSIKKSKKNKK--SLSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKELLKQ  263 (263)
T ss_pred             HHHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999887653  399999999999999999999999999999999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
4gfq_A	209	2.65 Angstrom Resolution Crystal Structure Of Ribos		8e-46
1eh1_A	185	Ribosome Recycling Factor From Thermus Thermophilus		2e-44
1wqf_A	185	Crystal Structure Of Ribosome Recycling Factor From		8e-43
1ek8_A	185	Crystal Structure Of The Ribosome Recycling Factor		2e-41
4gd1_Y	183	Structures Of The Bacterial Ribosome In Classical A		2e-41
1is1_A	185	Crystal Structure Of Ribosome Recycling Factor From		1e-40
1ise_A	185	Crystal Structure Of A Mutant Of Ribosome Recycling		1e-40
1dd5_A	185	Crystal Structure Of Thermotoga Maritima Ribosome R		7e-40
1ge9_A	184	Solution Structure Of The Ribosome Recycling Factor		2e-26
1y69_8	113	Rrf Domain I In Complex With The 50s Ribosomal Subu		5e-13
3lf9_A	121	Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1		9e-12
3lhp_S	123	Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1		1e-06

>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209

Iteration: 1
 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 126/174 (72%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
           +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYD
Sbjct: 36  KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 95
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNI 222
           K+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+
Sbjct: 96  KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNV 155
Query: 223 RRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K KEKE+++V
Sbjct: 156 RRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 209

>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 129/176 (73%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +L++
Sbjct: 9   ETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+VA
Sbjct: 69  QSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVA 128
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           +RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D + ++KE+E+L
Sbjct: 129 IRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184

>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185

Iteration: 1
 Score =  170 bits (430), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 121/178 (67%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  ++I
Sbjct: 8   DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           +PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+
Sbjct: 68  KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K KE ELL+V
Sbjct: 128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLEV 185

>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/177 (45%), Positives = 125/177 (70%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VA
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           VRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL++
Sbjct: 128 VRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184

>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/176 (45%), Positives = 124/176 (70%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VA
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           VRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL+
Sbjct: 128 VRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELM 183

>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 122/178 (68%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +L I
Sbjct: 8   DAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G+VA
Sbjct: 68  TVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +   KEKEL++V
Sbjct: 128 VRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELMEV 185

>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185

Iteration: 1
 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 124/177 (70%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +VA
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           VRN+ RDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL++
Sbjct: 128 VRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184

>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185

Iteration: 1
 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 127/177 (71%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I
Sbjct: 8   EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVA 218
           +P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+A
Sbjct: 68  KPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIA 127
Query: 219 VRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           +RNIRR+ LK  ++ QKE  + ED+ K L +++QKLTDE+++K+D +++ K++E+++
Sbjct: 128 IRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 184

>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 117/173 (67%), Gaps = 4/173 (2%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
           M++ ++  +     +RT R++ A++++I+VEYYGS V +K +  I+ P+ + ++IQ +D+
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
           +++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL +++ K  EE +V VRN+R
Sbjct: 76  NAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVR 134
Query: 224 RDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           R+A +  E+L+    +SED  K     LQKLTD+Y+ +I+ + + KEKE++ V
Sbjct: 135 REAKEMIEELE---GISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEIMSV 184

>pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 57/79 (72%)
Query: 197 TSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256
           T ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD
Sbjct: 34  TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93
Query: 257 EYMKKIDSIYKQKEKELLK 275
             +KKI++    KE EL++
Sbjct: 94  AAIKKIEAALADKEAELMQ 112

>pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 54/80 (67%)
Query: 197 TSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTD 256
           T ERRK+L K+V  +AE G+VAVRNI RDA      L K+K+++  ++     ++QKLTD
Sbjct: 34  TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93
Query: 257 EYMKKIDSIYKQKEKELLKV 276
             +KKID +   KEKEL++V
Sbjct: 94  VAVKKIDEVLAAKEKELMEV 113

>pdb|3LHP|S Chain S, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1isea_004_n 4e10 Fv Complex Length = 123

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 189 IRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 248
           +R   P  T ER K+  K+V  +AE+ +VAVRN+ RDA      L K+K+++  ++    
Sbjct: 38  VRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSL 95
Query: 249 SDLQKLTDEYMKKIDS 264
            D+QKLTD  +KKI++
Sbjct: 96  WDVQKLTDAAIKKIEA 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	3e-93
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	1e-92
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	1e-92
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	3e-92
1wqg_A	185	Ribosome recycling factor; translation factor, tri	4e-92
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	2e-91
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	3e-86
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	5e-53
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	2e-52
1wih_A	84	Mitochondrial ribosome recycling factor; structura	2e-35
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185

 Score =  272 bits (698), Expect = 3e-93
 Identities = 77/180 (42%), Positives = 128/180 (71%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
             K+ K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +
Sbjct: 5   FIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERT 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEG
Sbjct: 65  LVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEG 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           K+A+RNIRR+ LK  ++ QKE  + ED+ K L +++QKLTDE+++K+D +++ K++E+++
Sbjct: 125 KIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 184

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185

 Score =  270 bits (693), Expect = 1e-92
 Identities = 80/179 (44%), Positives = 130/179 (72%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           +  + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +
Sbjct: 6   LYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRT 65

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG
Sbjct: 66  LVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEG 125

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           +VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D + ++KE+E+L
Sbjct: 126 RVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209

 Score =  271 bits (695), Expect = 1e-92
 Identities = 84/181 (46%), Positives = 128/181 (70%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           + K    +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  
Sbjct: 29  VLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARL 88

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE 
Sbjct: 89  LVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEA 148

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K KEKE+++
Sbjct: 149 KVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 208

Query: 276 V 276
           V
Sbjct: 209 V 209

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185

 Score =  269 bits (690), Expect = 3e-92
 Identities = 83/181 (45%), Positives = 125/181 (69%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I+KD + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +
Sbjct: 5   IKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G
Sbjct: 65  LAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGG 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           +VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +   KEKEL++
Sbjct: 125 RVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELME 184

Query: 276 V 276
           V
Sbjct: 185 V 185

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185

 Score =  269 bits (690), Expect = 4e-92
 Identities = 77/181 (42%), Positives = 121/181 (66%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
              D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  
Sbjct: 5   ALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARL 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE 
Sbjct: 65  VVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEA 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K KE ELL+
Sbjct: 125 KVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184

Query: 276 V 276
           V
Sbjct: 185 V 185

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185

 Score =  267 bits (685), Expect = 2e-91
 Identities = 81/180 (45%), Positives = 126/180 (70%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I KD + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +
Sbjct: 5   IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRT 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ 
Sbjct: 65  LKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQA 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           +VAVRN+ RDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL++
Sbjct: 125 RVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184

 Score =  254 bits (651), Expect = 3e-86
 Identities = 70/181 (38%), Positives = 121/181 (66%), Gaps = 4/181 (2%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I K+ +  M++ ++  +     +RT R++ A++++I+VEYYGS V +K +  I+ P+ + 
Sbjct: 8   IFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQ 67

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++IQ +D++++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL +++ K  EE 
Sbjct: 68  IVIQVWDQNAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEA 126

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           +V VRN+RR+A    E +++ + +SED  K     LQKLTD+Y+ +I+ + + KEKE++ 
Sbjct: 127 RVRVRNVRREAK---EMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEIMS 183

Query: 276 V 276
           V
Sbjct: 184 V 184

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123

 Score =  167 bits (426), Expect = 5e-53
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 4/121 (3%)

Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
              I    K +   ++KA+ +    +        +R   P  T ER K+  K+V  +AE+
Sbjct: 6   HGSISDIRKDAEVRMDKAVEAFKNKLDKFKA--AVRKVFP--TEERIKDWLKIVRGEAEQ 61

Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
            +VAVRN+ RDA      L K+K+++  ++     D+QKLTD  +KKI++     E  L 
Sbjct: 62  ARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWLT 121

Query: 275 K 275
           +
Sbjct: 122 Q 122

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121

 Score =  166 bits (422), Expect = 2e-52
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 7/120 (5%)

Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
           +I    K + + ++K++ +    ++    G          T ERRK+L K+V  +AE G+
Sbjct: 1   MINEIKKDAQERMDKSVEALKNNLSKVRTGG-------GGTEERRKDLVKIVRGEAEGGR 53

Query: 217 VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLKV 276
           VAVRNI RDA      L K+K+++  ++     ++QKLTD  +KKID +   KEKEL++V
Sbjct: 54  VAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELMEV 113

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score =  121 bits (305), Expect = 2e-35
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLG 179
           G S  + LD I V      V+L  I QI+      +L+          +  KAI  S + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 180 MTPNNDGEVIRLTLPQLTSERRK 202
           + P  +G +IR+ +P++TS    
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 41/278 (14%), Positives = 86/278 (30%), Gaps = 67/278 (24%)

Query: 61  VKLSNKPIV-VRQLAHKRNGVVRCATIEEI--------EAEKSSIEKDVKARMERTIDMV 111
            +   K I+ V + A   N    C  ++++        E +   + KD  +   R    +
Sbjct: 14  HQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 112 RTNFNS-----VRTG-RSN-PAMLDKIEVEYYG-SPVSLKSIAQINTPDSSSLLIQPYD- 162
            +         V    R N   ++  I+ E    S ++   I Q +   + + +   Y+ 
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 163 ---------KSSL------------------KSIEKAIVSSDLGMTPNNDGEVIRLTL-- 193
                    + +L                  K+     V     +    D ++  L L  
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 194 ---PQLTSERRKELSKVVAKQAEEGKVAVRNIRR--DALKAY-EKLQKEKKLSE-----D 242
              P+   E  ++L   +            NI+    +++A   +L K K          
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 243 NVKDLSS----DLQ-K--LTDEYMKKIDSIYKQKEKEL 273
           NV++  +    +L  K  LT  + +  D +       +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 46/304 (15%), Positives = 96/304 (31%), Gaps = 85/304 (27%)

Query: 11  MRSIFQLKSNPPKCLLFLPDSCHRRAETA---TCRASSVSVRQWSSAANYSRLVKLSNKP 67
           +R + + K     CLL L +  + +A  A   +C+   ++ R      ++     LS   
Sbjct: 234 LRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCK-ILLTTRF-KQVTDF-----LSAAT 285

Query: 68  IVVRQLAHKRNGVVR------CATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
                L H    +             +   +    E  V     R + ++  +       
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESI------ 337

Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS---DL 178
           R   A  D      +           +N    ++++     +SSL  +E A        L
Sbjct: 338 RDGLATWD-----NW---------KHVNCDKLTTII-----ESSLNVLEPAEYRKMFDRL 378

Query: 179 GMTPNN---------------DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIR 223
            + P +                   + + + +L    +  L   V KQ +E  +++ +I 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSL---VEKQPKESTISIPSIY 432

Query: 224 RD-ALKAYEKLQKEKKLSE-DNVKD--LSSDLQKLT-DEY--------MKKIDSIYKQKE 270
            +  +K   +    + + +  N+     S DL     D+Y        +K I+      E
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE----HPE 488

Query: 271 KELL 274
           +  L
Sbjct: 489 RMTL 492

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	100.0
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	100.0
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	100.0
1wqg_A	185	Ribosome recycling factor; translation factor, tri	100.0
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	100.0
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	100.0
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	100.0
1wih_A	84	Mitochondrial ribosome recycling factor; structura	99.97
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	99.96
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	99.94
4hhu_A	170	OR280; engineered protein, PSI-biology, structural	86.11
3lay_A	175	Zinc resistance-associated protein; salmonella typ	83.64
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	83.3

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C

Probab=100.00  E-value=7.6e-63  Score=431.20  Aligned_cols=182  Identities=42%  Similarity=0.757  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus         4 ~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~   83 (185)
T 1dd5_A            4 PFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAIN   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      .|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus        84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl  163 (185)
T 1dd5_A           84 ASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKL  163 (185)
T ss_dssp             HSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||||||+|
T Consensus       164 td~~i~~id~~~~~KEkEim~v  185 (185)
T 1dd5_A          164 TDEFIEKLDEVFEIKKEEIMEF  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8

Probab=100.00  E-value=8e-63  Score=431.05  Aligned_cols=182  Identities=45%  Similarity=0.742  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus         4 ~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~   83 (185)
T 1ise_A            4 DIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIM   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      .|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus        84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl  163 (185)
T 1ise_A           84 ASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKL  163 (185)
T ss_dssp             TTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||||||+|
T Consensus       164 td~~i~~id~~~~~KEkEim~v  185 (185)
T 1ise_A          164 TDAAIKKIEAALADKEAELMQF  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y

Probab=100.00  E-value=8.9e-63  Score=430.89  Aligned_cols=182  Identities=46%  Similarity=0.753  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus         4 ~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~   83 (185)
T 1is1_A            4 EIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIM   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      .|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus        84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl  163 (185)
T 1is1_A           84 MSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKL  163 (185)
T ss_dssp             HTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||||||+|
T Consensus       164 td~~i~~id~~~~~KEkEim~v  185 (185)
T 1is1_A          164 TDVAVKKIDEVLAAKEKELMEV  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A

Probab=100.00  E-value=9.2e-63  Score=430.80  Aligned_cols=182  Identities=42%  Similarity=0.764  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||+
T Consensus         4 ~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~   83 (185)
T 1wqg_A            4 EALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIR   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                      .|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus        84 ~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkl  163 (185)
T 1wqg_A           84 NSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKT  163 (185)
T ss_dssp             HSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||||||+|
T Consensus       164 td~~i~~id~~~~~KEkEim~v  185 (185)
T 1wqg_A          164 THQYVTQIDELVKHKEGELLEV  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999986

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}

Probab=100.00  E-value=1.4e-62  Score=435.62  Aligned_cols=183  Identities=46%  Similarity=0.792  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      ..++.+++++|++++++|+.+|++||+|||||+|||+|.|+|||+++||++||+|+++++++|+|+|||++++++|++||
T Consensus        27 ~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI  106 (209)
T 4gfq_A           27 QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAI  106 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      ++|||||||++||+.|+|+||+||+|+|++|+|.|++.+|+||++|||||+++++.+|+++|++.+|||+.++++++||+
T Consensus       107 ~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQk  186 (209)
T 4gfq_A          107 LKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQK  186 (209)
T ss_dssp             HHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q 023857          254 LTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      +||+|+++||+++++||||||+|
T Consensus       187 lTd~~i~~iD~~l~~KEkEim~V  209 (209)
T 4gfq_A          187 ETDKYIAKVDEIAKNKEKEIMEV  209 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999987

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G

Probab=100.00  E-value=2.3e-62  Score=428.16  Aligned_cols=182  Identities=44%  Similarity=0.785  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++.+++++|++++++|+.+|++||+||+||++||+|.|+|||.++||++||+|+++++++|+|+|||++++++|++||
T Consensus         4 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   83 (185)
T 1eh1_A            4 KELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAI   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      +.|||||||++||++|+|+||+||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||+
T Consensus        84 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQk  163 (185)
T 1eh1_A           84 RDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQK  163 (185)
T ss_dssp             SSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhc
Q 023857          254 LTDEYMKKIDSIYKQKEKELLK  275 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~  275 (276)
                      +||+|+++||+++++||||||+
T Consensus       164 ltd~~i~~id~~~~~KEkEim~  185 (185)
T 1eh1_A          164 ITDEFIAKADQLAEKKEQEILG  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999996

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1

Probab=100.00  E-value=8.6e-61  Score=417.94  Aligned_cols=179  Identities=40%  Similarity=0.699  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||.++||++||+|+++++|+|+|+|||++++++|++||
T Consensus         6 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   85 (184)
T 1ge9_A            6 EDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI   85 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      +. ||||||++||++|+|+||+||+|+|++++|.|++.+|+||++|||||+++++.+|+++  + +|||+.++++++||+
T Consensus        86 ~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQk  161 (184)
T 1ge9_A           86 RE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQK  161 (184)
T ss_dssp             HH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHHH
T ss_pred             Hh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHHH
Confidence            99 9999999999999999999999999999999999999999999999999999999986  4 999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q 023857          254 LTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      +||+|+++||+++++||||||+|
T Consensus       162 ltd~~i~~id~~~~~KEkEim~v  184 (184)
T 1ge9_A          162 LTDKYIDEINKLMEAKEKEIMSV  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999986

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1

Probab=99.97  E-value=2e-32  Score=211.23  Aligned_cols=82  Identities=28%  Similarity=0.413  Sum_probs=80.8

Q ss_pred             CCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecC-CCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 023857          121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE  199 (276)
Q Consensus       121 GRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D-~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E  199 (276)
                      ||+||++||+|+|+|||.++||++||+|+++++|+|+|+||| ++++++|+|||++|||||||++||++|||+||+||+|
T Consensus         1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE   80 (84)
T 1wih_A            1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence            899999999999999999999999999999999999999988 8999999999999999999999999999999999999


Q ss_pred             HHH
Q 023857          200 RRK  202 (276)
Q Consensus       200 ~R~  202 (276)
                      +|+
T Consensus        81 rR~   83 (84)
T 1wih_A           81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            996

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}

Probab=99.96  E-value=2e-28  Score=198.53  Aligned_cols=110  Identities=44%  Similarity=0.633  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHH
Q 023857           95 SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIV  174 (276)
Q Consensus        95 ~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~  174 (276)
                      .|-.+++.+|+++++.|+.+++++||||                                                    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------   31 (121)
T 3lf9_A            4 EIKKDAQERMDKSVEALKNNLSKVRTGG----------------------------------------------------   31 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCSS----------------------------------------------------
T ss_pred             HHHhhHHHHHHHHHHHHHHhhHhhcCCC----------------------------------------------------
Confidence            4577899999999999999999999985                                                    


Q ss_pred             hCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHH
Q 023857          175 SSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKL  254 (276)
Q Consensus       175 ~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkl  254 (276)
                                          |||+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||++
T Consensus        32 --------------------plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKL   91 (121)
T 3lf9_A           32 --------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKL   91 (121)
T ss_dssp             --------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHH
T ss_pred             --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHH
Confidence                                689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcC
Q 023857          255 TDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       255 td~~ik~iD~l~k~KeKEll~v  276 (276)
                      ||+|+++||+++++||+|||.|
T Consensus        92 TDkyIkkID~ll~~KEKEI~~~  113 (121)
T 3lf9_A           92 TDVAVKKIDEVLAAKEKELMEV  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8

Probab=99.94  E-value=9.2e-28  Score=195.92  Aligned_cols=89  Identities=36%  Similarity=0.431  Sum_probs=86.7

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 023857          185 DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS  264 (276)
Q Consensus       185 Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~  264 (276)
                      ++++|||+||  |+|+|++|+|.|++++|+||++|||||+++++.+|+++|++.+|||+.++++++||+|||+|+++||+
T Consensus        34 ~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID~  111 (123)
T 3lhp_S           34 FKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEA  111 (123)
T ss_dssp             HHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q 023857          265 IYKQKEKELLK  275 (276)
Q Consensus       265 l~k~KeKEll~  275 (276)
                      ++++||||||+
T Consensus       112 ll~~KEKEIm~  122 (123)
T 3lhp_S          112 ALADMEAWLTQ  122 (123)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999996

>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}

Probab=86.11  E-value=8  Score=31.49  Aligned_cols=92  Identities=22%  Similarity=0.406  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHHHhC--
Q 023857           99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS--  176 (276)
Q Consensus        99 ~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI~~S--  176 (276)
                      ++..++.+--++|+.+|+              |.|.|.           | ...|.-+++..|.-..+.+.++|+..-  
T Consensus        53 qvrkelakeaerl~~efn--------------i~v~y~-----------i-mgsgsgvm~i~f~gddlea~ekalkemir  106 (170)
T 4hhu_A           53 QVRKELAKEAERLKAEFN--------------INVQYQ-----------I-MGSGSGVMVIVFEGDDLEALEKALKEMIR  106 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHT--------------CEEEEE-----------E-ECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcc--------------eEEEEE-----------E-EeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence            566777777888888884              566652           2 133555677788888888888887532  


Q ss_pred             ---CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 023857          177 ---DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK  216 (276)
Q Consensus       177 ---~L--glnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aK  216 (276)
                         .+  .++-..||+.+-|.|--+.+..|++|+|.|..++.++.
T Consensus       107 qarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efn  151 (170)
T 4hhu_A          107 QARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFN  151 (170)
T ss_dssp             HHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcc
Confidence               22  23345799999999999999999999999988876653

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=83.64  E-value=15  Score=31.05  Aligned_cols=74  Identities=11%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023857          195 QLTSERRKELSKVVAKQAEEGK---VAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEK  271 (276)
Q Consensus       195 ~lT~E~R~~lvK~aKk~~E~aK---v~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQkltd~~ik~iD~l~k~KeK  271 (276)
                      .||+|.++++-+.-.++..+..   ..++..|.    .+..+--.....++.++.+.++|.++..+...+--++..+-.|
T Consensus        67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~----EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K  142 (175)
T 3lay_A           67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRY----EYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ  142 (175)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999987666555544432   23333333    3333433456778888899999998888877776665555444


Q ss_pred             h
Q 023857          272 E  272 (276)
Q Consensus       272 E  272 (276)
                      |
T Consensus       143 e  143 (175)
T 3lay_A          143 A  143 (175)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=83.30  E-value=5.7  Score=30.33  Aligned_cols=57  Identities=25%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHhhcCCCChhhhhh-hHHHHHHHHH
Q 023857          193 LPQLTSERRKELSKVVAKQAEEGKVA-------VRNI------RRDALKAYEKLQKEKKLSEDNVKD-LSSDLQKLTD  256 (276)
Q Consensus       193 iP~lT~E~R~~lvK~aKk~~E~aKv~-------IRni------R~~~~k~ikkl~K~k~iseD~~k~-~~k~IQkltd  256 (276)
                      +|.++.|.|+.+++.+....++|..-       +|++      |..++.+++..+.       ++.+ ++.++++++|
T Consensus        24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~-------dl~~~lk~~lk~l~d   94 (97)
T 3onj_A           24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK-------TIQSDIKRPLQSLVD   94 (97)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------HHHHHTHHHHHHHHH
T ss_pred             HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Confidence            35778899999999999999998764       4555      5555555554432       3344 5556655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	5e-56
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	5e-55
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	9e-55
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	7e-53
d1ek8a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch	4e-52
d1ge9a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui	2e-51
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	5e-31

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  176 bits (447), Expect = 5e-56
 Identities = 76/180 (42%), Positives = 120/180 (66%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
              D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  
Sbjct: 4   ALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARL 63

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE 
Sbjct: 64  VVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEA 123

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K KE ELL+
Sbjct: 124 KVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 183

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score =  173 bits (441), Expect = 5e-55
 Identities = 80/179 (44%), Positives = 130/179 (72%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           +  + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +
Sbjct: 6   LYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRT 65

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG
Sbjct: 66  LVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEG 125

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           +VA+RNIRR+AL   +KL KE  LSED  K   +++QK+TDE++ K D + ++KE+E+L
Sbjct: 126 RVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEIL 184

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score =  173 bits (439), Expect = 9e-55
 Identities = 83/181 (45%), Positives = 125/181 (69%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I+KD + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +
Sbjct: 5   IKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G
Sbjct: 65  LAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGG 124

Query: 216 KVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELLK 275
           +VAVRNIRRDA    + L K+K++SED  +    ++QKLTD  +KKID +   KEKEL++
Sbjct: 125 RVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELME 184

Query: 276 V 276
           V
Sbjct: 185 V 185

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score =  168 bits (426), Expect = 7e-53
 Identities = 77/181 (42%), Positives = 128/181 (70%)

Query: 95  SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
              K+ K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  
Sbjct: 3   PFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEER 62

Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
           +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EE
Sbjct: 63  TLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEE 122

Query: 215 GKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKELL 274
           GK+A+RNIRR+ LK  ++ QKE  + ED+ K L +++QKLTDE+++K+D +++ K++E++
Sbjct: 123 GKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIM 182

Query: 275 K 275
           +
Sbjct: 183 E 183

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

 Score =  166 bits (422), Expect = 4e-52
 Identities = 83/182 (45%), Positives = 128/182 (70%)

Query: 94  SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
           S I KD + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS
Sbjct: 3   SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 62

Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
            +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE
Sbjct: 63  RTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122

Query: 214 EGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQKEKEL 273
           + +VAVRN+RRDA    + L K+K++SED+ +    D+QKLTD  +KKI++    KE EL
Sbjct: 123 QARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182

Query: 274 LK 275
           ++
Sbjct: 183 MQ 184

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

 Score =  164 bits (416), Expect = 2e-51
 Identities = 72/191 (37%), Positives = 126/191 (65%), Gaps = 8/191 (4%)

Query: 86  IEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSI 145
           I+E+E     I K+ +  M++ ++  +     +RT R++ A++++I+VEYYGS V +K +
Sbjct: 2   IKELE----DIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQL 57

Query: 146 AQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELS 205
             I+ P+ + ++IQ +D++++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL 
Sbjct: 58  GTISVPEHNQIVIQVWDQNAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELV 116

Query: 206 KVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 265
           +++ K  EE +V VRN+RR+A +    +++ + +SED  K     LQKLTD+Y+ +I+ +
Sbjct: 117 RLLHKITEEARVRVRNVRREAKE---MIEELEGISEDEKKRALERLQKLTDKYIDEINKL 173

Query: 266 YKQKEKELLKV 276
            + KEKE++ V
Sbjct: 174 MEAKEKEIMSV 184

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score =  108 bits (272), Expect = 5e-31
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLG 179
           G S  + LD I V      V+L  I QI+      +L+          +  KAI  S + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 180 MTPNNDGEVIRLTLPQLTSERRK 202
           + P  +G +IR+ +P++TS    
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	100.0
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	100.0
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	100.0
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	100.0
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	100.0
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	100.0
d1wiha_	84	Ribosome recycling factor, RRF {Mouse (Mus musculu	99.95

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=100.00  E-value=1.1e-59  Score=409.58  Aligned_cols=183  Identities=45%  Similarity=0.751  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||+++||++||+|++++|++|+|+|||++++++|++||
T Consensus         3 ~~i~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI   82 (185)
T d1is1a_           3 NEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecccchHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      ++||||+||++||+.|+|+||+||+|+|++++|.|++.+|+||++|||+|+++++.+++++|++++|+|+.++++++||+
T Consensus        83 ~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~  162 (185)
T d1is1a_          83 MMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQK  162 (185)
T ss_dssp             HHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HhcccccccccCCceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q 023857          254 LTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      +||+|+++||+++++||||||+|
T Consensus       163 ltd~~~~~id~~~~~KekEim~v  185 (185)
T d1is1a_         163 LTDVAVKKIDEVLAAKEKELMEV  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999987

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.2e-59  Score=404.97  Aligned_cols=183  Identities=42%  Similarity=0.755  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++.+++++|++++++|+.+|+++|+||+||++||+|.|++||+++||++||+|+++++++|+|+|||++++++|++||
T Consensus         2 ~~~~~~~~~kM~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~kAI   81 (184)
T d1dd5a_           2 NPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAI   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccchhhHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      ++||||+||++||+.|+|+||+||+|+|++++|.||+.+|+||++|||+|+++++.+++++|++.+|||+.++++++||+
T Consensus        82 ~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq~  161 (184)
T d1dd5a_          82 NASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQK  161 (184)
T ss_dssp             HHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HhcccCCCCccCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q 023857          254 LTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      +||+|+++||+++++||||||++
T Consensus       162 ltd~~~~~id~~~~~Kekeim~~  184 (184)
T d1dd5a_         162 LTDEFIEKLDEVFEIKKEEIMEF  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999974

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.1e-59  Score=404.71  Aligned_cols=182  Identities=42%  Similarity=0.759  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++.+++++|++++++|+.+|+++|+||+||++||+|.|+|||+++||++||+|+++++++|+|+|||++++++|++||
T Consensus         2 ~~~l~~~~~kM~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI   81 (183)
T d1wqga1           2 DEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAI   81 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecchhhHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      ++|||||||+.||+.|+|+||+||+|+|++++|.||+.+|+||++|||||+++++.++++++++.+|+|+.++++++||+
T Consensus        82 ~~s~lglnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq~  161 (183)
T d1wqga1          82 RNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDK  161 (183)
T ss_dssp             HHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCcCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhc
Q 023857          254 LTDEYMKKIDSIYKQKEKELLK  275 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~  275 (276)
                      +||+|+++||+++++||||||+
T Consensus       162 ltd~~~~~id~~~~~KekEil~  183 (183)
T d1wqga1         162 TTHQYVTQIDELVKHKEGELLE  183 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999984

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-58  Score=402.12  Aligned_cols=183  Identities=45%  Similarity=0.752  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHHH
Q 023857           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (276)
Q Consensus        94 ~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kAI  173 (276)
                      +.++++++++|++++++|+.+|+++|+||+||++||+|.|+|||.++||++||+|+++|+++|+|+|||++.+++|++||
T Consensus         3 ~~i~~~~~~kM~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI   82 (185)
T d1ek8a_           3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeechHhhHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHHH
Q 023857          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQK  253 (276)
Q Consensus       174 ~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQk  253 (276)
                      ++||||+||++||+.|+|+||+||+|+|++++|.||+.+|+||++|||||+++++.+++++|++++|||+.++++++||+
T Consensus        83 ~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~iq~  162 (185)
T d1ek8a_          83 MASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQK  162 (185)
T ss_dssp             HHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCccccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q 023857          254 LTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       254 ltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      +||+|+++||+++++||||||++
T Consensus       163 ltd~~~~~id~~~~~Kekeil~~  185 (185)
T d1ek8a_         163 LTDAAIKKIEAALADKEAELMQF  185 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999974

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-58  Score=399.61  Aligned_cols=182  Identities=44%  Similarity=0.783  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHHH
Q 023857           93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKA  172 (276)
Q Consensus        93 ~~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~kA  172 (276)
                      ++.++++++++|++++++|+++|+++|+||+||++||+|.|+|||+++||++||||+++++++|+|+|||++++++|++|
T Consensus         3 ~~~~~~~~~~~M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~kA   82 (185)
T d1eh1a_           3 LKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKA   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccchHHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHHH
Q 023857          173 IVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQ  252 (276)
Q Consensus       173 I~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~IQ  252 (276)
                      |++||||+||+.||+.|+|+||+||+|+|++++|.|++.+|+||++||++|+++++.+++++|++++|||+.++++++||
T Consensus        83 I~~s~l~l~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~eiq  162 (185)
T d1eh1a_          83 IRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQ  162 (185)
T ss_dssp             HSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcCcccccccCccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Q 023857          253 KLTDEYMKKIDSIYKQKEKELL  274 (276)
Q Consensus       253 kltd~~ik~iD~l~k~KeKEll  274 (276)
                      ++||+|+++||+++++||||||
T Consensus       163 ~ltd~~~~~id~~~~~KekEil  184 (185)
T d1eh1a_         163 KITDEFIAKADQLAEKKEQEIL  184 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999998

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.2e-57  Score=392.34  Aligned_cols=181  Identities=40%  Similarity=0.697  Sum_probs=175.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecCCCcHHHHHH
Q 023857           92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEK  171 (276)
Q Consensus        92 ~~~~i~~~~~~kM~k~ve~lk~~l~kiRtGRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D~s~ik~I~k  171 (276)
                      +++.++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++++++|++
T Consensus         4 ~~~~i~~~~~~~m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~Iek   83 (184)
T d1ge9a_           4 ELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEK   83 (184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeecccHHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhHHHH
Q 023857          172 AIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDL  251 (276)
Q Consensus       172 AI~~S~LglnPq~Dg~~I~V~iP~lT~E~R~~lvK~aKk~~E~aKv~IRniR~~~~k~ikkl~K~k~iseD~~k~~~k~I  251 (276)
                      || .|+||+||+.||+.|+|+||+||+|+|++++|.||+.+|+||++|||||+++++.+|++   +++|||++++++++|
T Consensus        84 AI-~s~lglnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~---k~iseD~~k~~~~~i  159 (184)
T d1ge9a_          84 AI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERL  159 (184)
T ss_dssp             HH-HHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHH
T ss_pred             HH-hccCCCCCCCCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence            99 57999999999999999999999999999999999999999999999999999999876   469999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcC
Q 023857          252 QKLTDEYMKKIDSIYKQKEKELLKV  276 (276)
Q Consensus       252 Qkltd~~ik~iD~l~k~KeKEll~v  276 (276)
                      |++||+|+++||+++++||||||+|
T Consensus       160 qkltd~~~~~id~~~~~Kekeim~v  184 (184)
T d1ge9a_         160 QKLTDKYIDEINKLMEAKEKEIMSV  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999987

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=99.95  E-value=1.4e-29  Score=193.76  Aligned_cols=82  Identities=28%  Similarity=0.413  Sum_probs=80.1

Q ss_pred             CCCCcCCCcceEEEECCccccccceeeeecCCCcEEEEeecC-CCcHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 023857          121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE  199 (276)
Q Consensus       121 GRa~P~ild~I~V~~~G~~~pL~~lAqVsv~~~~tL~I~p~D-~s~ik~I~kAI~~S~LglnPq~Dg~~I~V~iP~lT~E  199 (276)
                      ||+||+|||+|.|+|||+++||++||+|+++++++|+|+||| ++.+++|++||++||||+||+.||+.|||+||+||.|
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~   80 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCCCCCC
Confidence            899999999999999999999999999999999999999999 8999999999999999999999999999999999998


Q ss_pred             HHH
Q 023857          200 RRK  202 (276)
Q Consensus       200 ~R~  202 (276)
                      .|+
T Consensus        81 ~~~   83 (84)
T d1wiha_          81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            763