Citrus Sinensis ID: 023886

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHcccccccccEEEccccccEEEEccccHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccccHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHccccccccEEEccccccEEEEEccHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mteedqdqdqeleipegsvrnileqdslkwvfvggkggvgktTCSSILSILLaevrpsvliistdpahnlsdAFQQrftktptlvngfsnlyamevdpsveeetgstegmDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYscivfdtaptghtlrllqfpsTLEKGLDKMMSLKNKFGGMINQMTRlfgiddefgeDALLGRLEGMKDVIERVNkqfkdpdlttfVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVlyddegmhcncrc
Flexible Loop (DISEMBL)
mteedqdqdqeleipegsvrnileqdsLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNkqfkdpdlttFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Low Complexity Region (SEG)
MTeedqdqdqeLEIPEGSVRNILEQDSLKWVFvggkggvgkttCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Disordered region (IsUnstruct)
********************NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAME******************FSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCN***
Disordered Region (DISOPRED)
*****************SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL************************ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Disordered Region (DISEMBL)
***********LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD***********GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Disordered Region (DISPRO)
***********LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q16MG9	341	ATPase ASNA1 homolog OS=A	N/A	no	0.967	0.782	0.597	2e-82
B0WEV5	348	ATPase ASNA1 homolog OS=C	N/A	no	0.967	0.767	0.593	4e-82
Q5TRE7	337	ATPase ASNA1 homolog OS=A	yes	no	0.960	0.786	0.578	4e-80
A8N0V8	326	ATPase GET3 OS=Coprinopsi	N/A	no	0.949	0.803	0.594	7e-80
A7RQM5	334	ATPase ASNA1 homolog OS=N	N/A	no	0.931	0.769	0.599	2e-79
P0CM24	325	ATPase GET3 OS=Cryptococc	yes	no	0.942	0.8	0.588	2e-78
P0CM25	325	ATPase GET3 OS=Cryptococc	N/A	no	0.942	0.8	0.588	2e-78
B3MHB7	336	ATPase ASNA1 homolog OS=D	N/A	no	0.916	0.752	0.598	7e-78
B4H8J5	336	ATPase ASNA1 homolog OS=D	N/A	no	0.949	0.779	0.576	8e-78
Q28YJ2	336	ATPase ASNA1 homolog OS=D	yes	no	0.949	0.779	0.576	1e-77

>sp|Q16MG9|ASNA_AEDAE ATPase ASNA1 homolog OS=Aedes aegypti GN=AAEL011136 PE=3 SV=1

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/278 (59%), Positives = 207/278 (74%), Gaps = 11/278 (3%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           D + E    S+ NI++Q++LKWVFVGGKGGVGKTTCS  L++ LA+VR SVLIISTDPAH
Sbjct: 2   DTDFEPLAPSLENIIDQETLKWVFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 61

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELA 118
           N+SDAF Q+FTK PT VNGF+NL+AME+DP+V          E E  + +    +F E+ 
Sbjct: 62  NISDAFDQKFTKVPTKVNGFNNLFAMEIDPNVGLNELPDEYFEGENSAMKLSKGVFQEII 121

Query: 119 NAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178
            A+PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K
Sbjct: 122 GALPGIDEAMSYAEVMKLVKAMNFSVVVFDTAPTGHTLRLLSFPQVVEKGLGKLLMLKMK 181

Query: 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238
               I+QM  LFG+ D F  D L G+LE M  +I +VN+QF++PD TTFVCVCI EFLSL
Sbjct: 182 LAPFISQMGSLFGMQD-FNADTLTGKLEEMLTIIRQVNEQFRNPDQTTFVCVCIAEFLSL 240

Query: 239 YETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
           YETERLVQELTK  IDTHNII+NQ+L+  EG      C
Sbjct: 241 YETERLVQELTKCGIDTHNIIVNQLLFRREGQAPCAMC 278

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.
Aedes aegypti (taxid: 7159)
EC: 3EC: .EC: 6EC: .EC: -EC: .EC: -

>sp|B0WEV5|ASNA_CULQU ATPase ASNA1 homolog OS=Culex quinquefasciatus GN=CPIJ005690 PE=3 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 165/278 (59%), Positives = 206/278 (74%), Gaps = 11/278 (3%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           + + E  E S+RNI++Q SLKW+FVGGKGGVGKTTCS  L++ LA+ R SVLIISTDPAH
Sbjct: 2   EADFEPLEPSLRNIIDQKSLKWIFVGGKGGVGKTTCSCSLAVQLAKDRESVLIISTDPAH 61

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELA 118
           N+SDAF Q+FTK P+ VNGF NL+AME+DP+V          E E  + +    +F E+ 
Sbjct: 62  NISDAFDQKFTKVPSKVNGFDNLFAMEIDPNVGLNELPDEYFEGENSAMKLSKGVFQEII 121

Query: 119 NAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178
            A+PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K
Sbjct: 122 GALPGIDEAMSYAEVMKLVKAMNFSTVVFDTAPTGHTLRLLSFPQVVEKGLGKLLRLKMK 181

Query: 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238
               I+QM  LFG+ D F  D L G+LE M  +I +VN+QF++PD TTFVCVCI EFLSL
Sbjct: 182 LAPFISQMGSLFGMQD-FNADTLTGKLEEMLTIIRQVNEQFRNPDQTTFVCVCIAEFLSL 240

Query: 239 YETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
           YETERLVQELTK  IDTHNII+NQ+L+  EG      C
Sbjct: 241 YETERLVQELTKCGIDTHNIIVNQLLFRREGQAPCAMC 278

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Culex quinquefasciatus (taxid: 7176)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q5TRE7|ASNA_ANOGA ATPase ASNA1 homolog OS=Anopheles gambiae GN=AGAP005782 PE=3 SV=3

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/280 (57%), Positives = 203/280 (72%), Gaps = 15/280 (5%)

Query: 11  ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
           E E  E +++NI++Q SLKWVFVGGKGGVGKTTCS  L+I LA+ R SVLIISTDPAHN+
Sbjct: 4   EFEPCEPTLQNIIDQASLKWVFVGGKGGVGKTTCSCSLAIQLAQKRESVLIISTDPAHNI 63

Query: 71  SDAFQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELANA 120
           SDAF Q+FTK PT VNGF NL+AME+DP+V          E+E         +  E+   
Sbjct: 64  SDAFDQKFTKVPTKVNGFDNLFAMEIDPNVGISELPDEYFEDEASPLNVGKGMLQEVIGT 123

Query: 121 IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180
           +PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRLL FP  +EKGL K++ LK K  
Sbjct: 124 LPGIDEAMSYAEVMKLVKAMNFSVVVFDTAPTGHTLRLLSFPQVVEKGLGKLLRLKMKLA 183

Query: 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYE 240
            +I QM  LFG+ D F  D +  +LE M  +I++VN+QF +P  TTFVCVCI EFLSLYE
Sbjct: 184 PIITQMGSLFGVQD-FNGDTIANKLEEMLSIIQQVNEQFHNPQQTTFVCVCIAEFLSLYE 242

Query: 241 TERLVQELTKFEIDTHNIIINQVLYDDEGMH----CNCRC 276
           TERLVQELTK  IDTHNII+NQ+++  +G      C+ RC
Sbjct: 243 TERLVQELTKCGIDTHNIIVNQLMFQKKGQQPCSMCSARC 282

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Anopheles gambiae (taxid: 7165)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A8N0V8|GET3_COPC7 ATPase GET3 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=GET3 PE=3 SV=1

 Score =  297 bits (760), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 205/271 (75%), Gaps = 9/271 (3%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           E+   +++NIL+Q SLKW+F GGKGGVGKTT S  L+I LA+VR SVL+ISTDPAHNLSD
Sbjct: 4   ELLPPTLQNILDQKSLKWIFCGGKGGVGKTTTSCSLAIQLAKVRESVLLISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEETGSTEGMDSLFSELANAIPGIDEA 127
           AF Q+F+K  T VNGF NL+AME+DP+     + E++ S   M S+  +LA AIPG+DEA
Sbjct: 64  AFGQKFSKDATKVNGFDNLFAMEIDPTSAIQEMVEQSDSNGMMGSMMQDLAFAIPGVDEA 123

Query: 128 MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187
           MSFAE++K V++M YS IVFDTAPTGHTLR L FP+ LEK L K+ +L ++FG MI+QM+
Sbjct: 124 MSFAEIMKHVKSMQYSVIVFDTAPTGHTLRFLSFPTVLEKALGKLSTLGSRFGPMISQMS 183

Query: 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE 247
            + G +    ED +  +LE M+ VI  VN QFKDP+ TTFVCVCI EFLSLYETERLVQE
Sbjct: 184 SMMGGEAGSQED-MFAKLESMRAVITEVNTQFKDPEKTTFVCVCISEFLSLYETERLVQE 242

Query: 248 LTKFEIDTHNIIINQVLYDDEGM---HCNCR 275
           LT +EIDTHNI++NQ+L+  +     HC+ R
Sbjct: 243 LTAYEIDTHNIVVNQLLFPKKSSNCEHCSVR 273

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A7RQM5|ASNA_NEMVE ATPase ASNA1 homolog OS=Nematostella vectensis GN=v1g161623 PE=3 SV=1

 Score =  295 bits (756), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/267 (59%), Positives = 199/267 (74%), Gaps = 10/267 (3%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E S++NI+EQDSLKW+FVGGKGGVGKTTCS  +++ LA  R SVLIISTDPAHN+SDAF 
Sbjct: 15  EPSIKNIVEQDSLKWIFVGGKGGVGKTTCSCSIAVQLALTRRSVLIISTDPAHNISDAFD 74

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSV---EEETGSTEGMD------SLFSELANAIPGIDE 126
           Q+F+K PTLV GF NLYAME+DP++          EG D      ++ SEL  A PGIDE
Sbjct: 75  QKFSKVPTLVKGFQNLYAMEIDPNLGFSNLPEDYFEGPDMMSMGKAMISELLGAFPGIDE 134

Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
           AMSFAE+++LV +MD+S ++FDTAPTGHTLRLL FPS +EK L K++SLKN     I+Q 
Sbjct: 135 AMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIEKSLGKILSLKNSISPFISQF 194

Query: 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
             L G+ D    D +  +LE    VI++V+ QFK+PD TTFVCVCI EFLSLYETERL+Q
Sbjct: 195 GSLLGMQD-LNADQMTSKLEETLPVIKQVSAQFKNPDHTTFVCVCIAEFLSLYETERLIQ 253

Query: 247 ELTKFEIDTHNIIINQVLYDDEGMHCN 273
           ELTK EIDTHNII+NQ+++  +   CN
Sbjct: 254 ELTKSEIDTHNIIVNQLVFPSKREECN 280

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Nematostella vectensis (taxid: 45351)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|P0CM24|GET3_CRYNJ ATPase GET3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GET3 PE=3 SV=1

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/267 (58%), Positives = 199/267 (74%), Gaps = 7/267 (2%)

Query: 11  ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
           +LE  + +++NIL+Q SLKW+F GGKGGVGKTT S  L++ LA  R SVL+ISTDPAHNL
Sbjct: 3   DLEPLDPTLQNILDQKSLKWIFCGGKGGVGKTTTSCSLAVQLAACRESVLLISTDPAHNL 62

Query: 71  SDAFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEETGSTEGMDSLFSELANAIPGID 125
           SDAF Q+F K  T VNGF NLYAME+DP+     + E +  T GM  +  +LA AIPG+D
Sbjct: 63  SDAFSQKFGKDATKVNGFDNLYAMEIDPNGSLQEMIESSDQTGGMGGMMQDLAFAIPGVD 122

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAM FAE++K V++M++S IVFDTAPTGHTLR L FPS LEK L K+ +L  KFG MI Q
Sbjct: 123 EAMGFAEIMKHVKSMEFSVIVFDTAPTGHTLRFLSFPSVLEKALGKLSTLGGKFGPMIQQ 182

Query: 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
           M  +FG      ++ +  +LE M+++I  VN QFKDP+ TTFVCVCI EFLSLYETERL+
Sbjct: 183 MQSMFG--GGAPQEDMFAKLESMREIITEVNNQFKDPEKTTFVCVCISEFLSLYETERLI 240

Query: 246 QELTKFEIDTHNIIINQVLYDDEGMHC 272
           QELT +EIDTHNI++NQ+L+   G +C
Sbjct: 241 QELTSYEIDTHNIVVNQLLFPKAGDNC 267

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|P0CM25|GET3_CRYNB ATPase GET3 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GET3 PE=3 SV=1

 Score =  292 bits (748), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/267 (58%), Positives = 199/267 (74%), Gaps = 7/267 (2%)

Query: 11  ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
           +LE  + +++NIL+Q SLKW+F GGKGGVGKTT S  L++ LA  R SVL+ISTDPAHNL
Sbjct: 3   DLEPLDPTLQNILDQKSLKWIFCGGKGGVGKTTTSCSLAVQLAACRESVLLISTDPAHNL 62

Query: 71  SDAFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEETGSTEGMDSLFSELANAIPGID 125
           SDAF Q+F K  T VNGF NLYAME+DP+     + E +  T GM  +  +LA AIPG+D
Sbjct: 63  SDAFSQKFGKDATKVNGFDNLYAMEIDPNGSLQEMIESSDQTGGMGGMMQDLAFAIPGVD 122

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAM FAE++K V++M++S IVFDTAPTGHTLR L FPS LEK L K+ +L  KFG MI Q
Sbjct: 123 EAMGFAEIMKHVKSMEFSVIVFDTAPTGHTLRFLSFPSVLEKALGKLSTLGGKFGPMIQQ 182

Query: 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
           M  +FG      ++ +  +LE M+++I  VN QFKDP+ TTFVCVCI EFLSLYETERL+
Sbjct: 183 MQSMFG--GGAPQEDMFAKLESMREIITEVNNQFKDPEKTTFVCVCISEFLSLYETERLI 240

Query: 246 QELTKFEIDTHNIIINQVLYDDEGMHC 272
           QELT +EIDTHNI++NQ+L+   G +C
Sbjct: 241 QELTSYEIDTHNIVVNQLLFPKAGDNC 267

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B3MHB7|ASNA_DROAN ATPase ASNA1 homolog OS=Drosophila ananassae GN=GF11712 PE=3 SV=1

 Score =  290 bits (742), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 158/264 (59%), Positives = 198/264 (75%), Gaps = 11/264 (4%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE  E S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           M+ Q   + G+ D    D L  +L+ M  +I +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 MLTQFVSMLGMAD-VNADTLSQKLDDMLRIITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLY 265
           ERLVQELTK  ID HNII+NQ+L+
Sbjct: 244 ERLVQELTKCGIDVHNIIVNQLLF 267

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila ananassae (taxid: 7217)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|B4H8J5|ASNA_DROPE ATPase ASNA1 homolog OS=Drosophila persimilis GN=GL20106 PE=3 SV=1

 Score =  290 bits (742), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 158/274 (57%), Positives = 202/274 (73%), Gaps = 12/274 (4%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE    S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLPASLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           ++ Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 LLTQFVSMLGMAD-VNVDTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
           ERL+QELTK  ID HNII+NQ+L+ +   H +C+
Sbjct: 244 ERLIQELTKCGIDVHNIIVNQLLFLNNS-HSSCK 276

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila persimilis (taxid: 7234)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q28YJ2|ASNA_DROPS ATPase ASNA1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14038 PE=3 SV=1

 Score =  289 bits (740), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/274 (57%), Positives = 201/274 (73%), Gaps = 12/274 (4%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
           LE    S++N++EQDSLKW+FVGGKGGVGKTTCSS L++ LA+VR SVLIISTDPAHN+S
Sbjct: 5   LEPLPASLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLAKVRESVLIISTDPAHNIS 64

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSV-------EEETGSTEGM---DSLFSELANAI 121
           DAF Q+FTK PT VNGF NL+AME+DP+        E   G  E +     +  E+ NA+
Sbjct: 65  DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFEGENEALRVSKGVMQEMINAL 124

Query: 122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
           PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct: 125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
           ++ Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct: 185 LLTQFASMLGMAD-VNVDTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query: 242 ERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
           ERL+QELTK  ID HNII+NQ+L+ +   H  C+
Sbjct: 244 ERLIQELTKCGIDVHNIIVNQLLFLNNS-HSACK 276

ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 3

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224067834	358	predicted protein [Populus trichocarpa]	0.927	0.715	0.914	1e-127
255541428	360	arsenical pump-driving atpase, putative	0.927	0.711	0.898	1e-126
296089136	357	unnamed protein product [Vitis vinifera]	0.931	0.719	0.888	1e-124
224127550	358	predicted protein [Populus trichocarpa]	0.927	0.715	0.891	1e-123
359489404	366	PREDICTED: ATPase ASNA1 homolog [Vitis v	0.931	0.702	0.888	1e-123
147851955	301	hypothetical protein VITISV_018248 [Viti	0.931	0.853	0.888	1e-123
449454494	355	PREDICTED: ATPase ASNA1 homolog [Cucumis	0.920	0.715	0.883	1e-122
449529574	297	PREDICTED: ATPase GET3-like, partial [Cu	0.920	0.855	0.883	1e-122
356520477	354	PREDICTED: ATPase ASNA1 homolog [Glycine	0.916	0.714	0.870	1e-119
388510106	356	unknown [Lotus japonicus]	0.916	0.710	0.874	1e-119

>gi|224067834|ref|XP_002302556.1| predicted protein [Populus trichocarpa] gi|222844282|gb|EEE81829.1| predicted protein [Populus trichocarpa]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/257 (91%), Positives = 251/257 (97%), Gaps = 1/257 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           +IP+G+VRNIL+QD+LKWVFVGGKGGVGKTTCSSILSILLA+VR SVLIISTDPAHNLSD
Sbjct: 5   DIPDGTVRNILDQDTLKWVFVGGKGGVGKTTCSSILSILLAQVRSSVLIISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTKTPTLVNGFSNLYAMEVDP+VE ++ G +EGMDSLFSELANAIPGIDEAMSFA
Sbjct: 65  AFQQRFTKTPTLVNGFSNLYAMEVDPNVENDDIGGSEGMDSLFSELANAIPGIDEAMSFA 124

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGL K+MSLK+KFGG+I QMTRLFG
Sbjct: 125 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLQKVMSLKSKFGGLIGQMTRLFG 184

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           IDDEFGEDA+LGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 185 IDDEFGEDAILGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 244

Query: 252 EIDTHNIIINQVLYDDE 268
           EIDTHNIIINQVLYD+E
Sbjct: 245 EIDTHNIIINQVLYDEE 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541428|ref|XP_002511778.1| arsenical pump-driving atpase, putative [Ricinus communis] gi|223548958|gb|EEF50447.1| arsenical pump-driving atpase, putative [Ricinus communis]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/257 (89%), Positives = 250/257 (97%), Gaps = 1/257 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           EIPEG+V+NILEQD+LKWVFVGGKGGVGKTTCSS+LSILLA VR SVLIISTDPAHNLSD
Sbjct: 7   EIPEGTVQNILEQDTLKWVFVGGKGGVGKTTCSSVLSILLARVRSSVLIISTDPAHNLSD 66

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTKTPTLVNGF+NL+AMEVDP+VE E+ G ++GMDS+FSELA+AIPGIDEAMSFA
Sbjct: 67  AFQQRFTKTPTLVNGFTNLFAMEVDPNVENEDVGGSDGMDSVFSELASAIPGIDEAMSFA 126

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLK+KFGG++NQ+TRLFG
Sbjct: 127 EMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLQKMMSLKSKFGGLLNQVTRLFG 186

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           IDDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 187 IDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 246

Query: 252 EIDTHNIIINQVLYDDE 268
           EIDTHNIIINQV+YD+E
Sbjct: 247 EIDTHNIIINQVIYDEE 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089136|emb|CBI38839.3| unnamed protein product [Vitis vinifera]

 Score =  449 bits (1154), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/260 (88%), Positives = 245/260 (94%), Gaps = 3/260 (1%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           DQEL    G+V+NIL+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAH
Sbjct: 4   DQELS---GTVQNILDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAH 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           NLSDAFQQRFTK PTLVNGFSNLYAMEVDPSVE E    +GMD+LFSELANAIPGIDEAM
Sbjct: 61  NLSDAFQQRFTKAPTLVNGFSNLYAMEVDPSVENEELPGDGMDNLFSELANAIPGIDEAM 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           SFAEMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLKNKFGG++NQMTR
Sbjct: 121 SFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLAKMMSLKNKFGGLLNQMTR 180

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           LFG+DDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL
Sbjct: 181 LFGVDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 240

Query: 249 TKFEIDTHNIIINQVLYDDE 268
            KFEID+HN+IINQVLYD+E
Sbjct: 241 NKFEIDSHNVIINQVLYDEE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127550|ref|XP_002320102.1| predicted protein [Populus trichocarpa] gi|222860875|gb|EEE98417.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/257 (89%), Positives = 245/257 (95%), Gaps = 1/257 (0%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           +IPEG+VRNILEQD+LKWVFVGGKGGVGKTTCSSILSILLA+VR SVLIISTDPAHNLSD
Sbjct: 5   DIPEGTVRNILEQDTLKWVFVGGKGGVGKTTCSSILSILLAQVRSSVLIISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
            FQQRFTKTPTLVNGFSNLYAMEVDP+VE ++ G  EGMDSLFSEL+NAIPGIDEAMSFA
Sbjct: 65  VFQQRFTKTPTLVNGFSNLYAMEVDPNVENDDIGGNEGMDSLFSELSNAIPGIDEAMSFA 124

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTM YSCIVFDTAPTGHTLRLLQ PSTLEKGL K+MSLK+KFGG+I+QMTRLFG
Sbjct: 125 EMLKLVQTMGYSCIVFDTAPTGHTLRLLQLPSTLEKGLQKVMSLKSKFGGLISQMTRLFG 184

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           +DDEFGEDA+LGRLE MKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL K 
Sbjct: 185 LDDEFGEDAILGRLESMKDVIEKVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELAKV 244

Query: 252 EIDTHNIIINQVLYDDE 268
           EIDTHNIIINQVLYD+E
Sbjct: 245 EIDTHNIIINQVLYDEE 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489404|ref|XP_002278613.2| PREDICTED: ATPase ASNA1 homolog [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/260 (88%), Positives = 245/260 (94%), Gaps = 3/260 (1%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           DQEL    G+V+NIL+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAH
Sbjct: 4   DQELS---GTVQNILDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAH 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           NLSDAFQQRFTK PTLVNGFSNLYAMEVDPSVE E    +GMD+LFSELANAIPGIDEAM
Sbjct: 61  NLSDAFQQRFTKAPTLVNGFSNLYAMEVDPSVENEELPGDGMDNLFSELANAIPGIDEAM 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           SFAEMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLKNKFGG++NQMTR
Sbjct: 121 SFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLAKMMSLKNKFGGLLNQMTR 180

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           LFG+DDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL
Sbjct: 181 LFGVDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 240

Query: 249 TKFEIDTHNIIINQVLYDDE 268
            KFEID+HN+IINQVLYD+E
Sbjct: 241 NKFEIDSHNVIINQVLYDEE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147851955|emb|CAN82244.1| hypothetical protein VITISV_018248 [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/260 (88%), Positives = 245/260 (94%), Gaps = 3/260 (1%)

Query: 9   DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           DQEL    G+V+NIL+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAH
Sbjct: 4   DQELS---GTVQNILDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAH 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           NLSDAFQQRFTK PTLVNGFSNLYAMEVDPSVE E    +GMD+LFSELANAIPGIDEAM
Sbjct: 61  NLSDAFQQRFTKAPTLVNGFSNLYAMEVDPSVENEELPGDGMDNLFSELANAIPGIDEAM 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           SFAEMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL KMMSLKNKFGG++NQMTR
Sbjct: 121 SFAEMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLAKMMSLKNKFGGLLNQMTR 180

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           LFG+DDEFGEDALLGRLEGMKDVIE+VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL
Sbjct: 181 LFGVDDEFGEDALLGRLEGMKDVIEQVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 240

Query: 249 TKFEIDTHNIIINQVLYDDE 268
            KFEID+HN+IINQVLYD+E
Sbjct: 241 NKFEIDSHNVIINQVLYDEE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454494|ref|XP_004144989.1| PREDICTED: ATPase ASNA1 homolog [Cucumis sativus] gi|449472679|ref|XP_004153666.1| PREDICTED: ATPase ASNA1 homolog [Cucumis sativus]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 246/257 (95%), Gaps = 3/257 (1%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           E+PEG+VRN+L+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAHNLSD
Sbjct: 4   ELPEGTVRNLLDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTK PTLVNGFSNLYAMEVDP+VE EE G  EGMD LFSELANAIPGIDEAMSFA
Sbjct: 64  AFQQRFTKAPTLVNGFSNLYAMEVDPTVENEEVG--EGMDGLFSELANAIPGIDEAMSFA 121

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL K+MSLK+KFGG++ QMTR+FG
Sbjct: 122 EMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLSKIMSLKSKFGGLLGQMTRMFG 181

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           +DDEFGEDA+LGRLEGM+DVIE+VN+QFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 182 VDDEFGEDAILGRLEGMRDVIEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 241

Query: 252 EIDTHNIIINQVLYDDE 268
           EIDTHNIIINQVL+D+E
Sbjct: 242 EIDTHNIIINQVLFDEE 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529574|ref|XP_004171773.1| PREDICTED: ATPase GET3-like, partial [Cucumis sativus]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 246/257 (95%), Gaps = 3/257 (1%)

Query: 13  EIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           E+PEG+VRN+L+Q+SLKWVFVGGKGGVGKTTCSSILSILL+ VR SVLIISTDPAHNLSD
Sbjct: 4   ELPEGTVRNLLDQESLKWVFVGGKGGVGKTTCSSILSILLSRVRSSVLIISTDPAHNLSD 63

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
           AFQQRFTK PTLVNGFSNLYAMEVDP+VE EE G  EGMD LFSELANAIPGIDEAMSFA
Sbjct: 64  AFQQRFTKAPTLVNGFSNLYAMEVDPTVENEEVG--EGMDGLFSELANAIPGIDEAMSFA 121

Query: 132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
           EMLKLVQTMDYS IVFDTAPTGHTLRLLQFPSTLEKGL K+MSLK+KFGG++ QMTR+FG
Sbjct: 122 EMLKLVQTMDYSVIVFDTAPTGHTLRLLQFPSTLEKGLSKIMSLKSKFGGLLGQMTRMFG 181

Query: 192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
           +DDEFGEDA+LGRLEGM+DVIE+VN+QFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF
Sbjct: 182 VDDEFGEDAILGRLEGMRDVIEQVNRQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 241

Query: 252 EIDTHNIIINQVLYDDE 268
           EIDTHNIIINQVL+D+E
Sbjct: 242 EIDTHNIIINQVLFDEE 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520477|ref|XP_003528888.1| PREDICTED: ATPase ASNA1 homolog [Glycine max]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/254 (87%), Positives = 241/254 (94%), Gaps = 1/254 (0%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           EG+V+N+LEQ++LKW+FVGGKGGVGKTTCSSILSILLA VR SVLIISTDPAHNLSDAFQ
Sbjct: 6   EGTVQNVLEQETLKWIFVGGKGGVGKTTCSSILSILLATVRSSVLIISTDPAHNLSDAFQ 65

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFAEML 134
           QRFTKTPTLVNGFSNLYAMEVDP+VE E+ G  +GMDSLFSELA AIPGIDEAMSFAEML
Sbjct: 66  QRFTKTPTLVNGFSNLYAMEVDPTVEHEDMGGADGMDSLFSELAGAIPGIDEAMSFAEML 125

Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
           KLVQTMDYS IVFDTAPTGHTLRLLQFPS LEKGL K+MSLKNKFGG+ NQMTR+FG+ D
Sbjct: 126 KLVQTMDYSVIVFDTAPTGHTLRLLQFPSVLEKGLAKVMSLKNKFGGLFNQMTRMFGMGD 185

Query: 195 EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID 254
           +FG+D +LGRLEGMKDVIE+VNKQFKDPD+TTFVCVCIPEFLSLYETERLVQELTKFEID
Sbjct: 186 DFGDDQILGRLEGMKDVIEQVNKQFKDPDMTTFVCVCIPEFLSLYETERLVQELTKFEID 245

Query: 255 THNIIINQVLYDDE 268
           THNIIINQV++DDE
Sbjct: 246 THNIIINQVIFDDE 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510106|gb|AFK43119.1| unknown [Lotus japonicus]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/254 (87%), Positives = 240/254 (94%), Gaps = 1/254 (0%)

Query: 16  EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           EG+V+N+LEQ+SLKWVFVGGKGGVGKTTCSSILSILLA VR SVLIISTDPAHNLSDAFQ
Sbjct: 6   EGTVQNVLEQESLKWVFVGGKGGVGKTTCSSILSILLASVRSSVLIISTDPAHNLSDAFQ 65

Query: 76  QRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFAEML 134
           QRFTKTPTLVNGFSNLYAMEVDP+VE E+ GS++GMDSL SELA AIPGIDEAMSFAEML
Sbjct: 66  QRFTKTPTLVNGFSNLYAMEVDPAVEHEDMGSSDGMDSLVSELAGAIPGIDEAMSFAEML 125

Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
           KLVQTMDYS IVFDTAPT HTLRLLQ PS LEKGL KMMSLKNKFGG+ NQMTR+FG+ D
Sbjct: 126 KLVQTMDYSVIVFDTAPTDHTLRLLQLPSVLEKGLAKMMSLKNKFGGLFNQMTRMFGMGD 185

Query: 195 EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID 254
           +FGEDA+LG+LEGMKDVIE+VNKQFKDPD+TT VCVCIPEFLSLYETERLVQELTKFEID
Sbjct: 186 DFGEDAILGKLEGMKDVIEQVNKQFKDPDMTTSVCVCIPEFLSLYETERLVQELTKFEID 245

Query: 255 THNIIINQVLYDDE 268
           THNIIINQV++DDE
Sbjct: 246 THNIIINQVIFDDE 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2025467	353	AT1G01910 [Arabidopsis thalian	0.927	0.725	0.789	1.7e-107
FB|FBgn0033191	336	CG1598 [Drosophila melanogaste	0.945	0.776	0.545	6.7e-72
WB|WBGene00014025	342	asna-1 [Caenorhabditis elegans	0.615	0.497	0.529	1.2e-69
UNIPROTKB|P30632	342	asna-1 "ATPase asna-1" [Caenor	0.615	0.497	0.529	1.2e-69
ZFIN|ZDB-GENE-040625-120	341	asna1 "arsA arsenite transport	0.927	0.750	0.522	3.8e-69
DICTYBASE|DDB_G0293528	329	arsA "arsenite-translocating A	0.938	0.787	0.507	4.9e-69
POMBASE|SPAC1142.06	329	get3 "GET complex ATPase subun	0.898	0.753	0.534	6.3e-69
UNIPROTKB|A5PJI5	348	ASNA1 "ATPase ASNA1" [Bos taur	0.927	0.735	0.515	7.2e-68
UNIPROTKB|O43681	348	ASNA1 "ATPase ASNA1" [Homo sap	0.927	0.735	0.515	7.2e-68
UNIPROTKB|F2Z5J4	348	ASNA1 "Uncharacterized protein	0.927	0.735	0.515	7.2e-68

TAIR|locus:2025467 AT1G01910 [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 203/257 (78%), Positives = 232/257 (90%)

Query:    13 EIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
             ++PE +V+NIL+Q+SLKWVF           CSSIL+I LA VR SVLIISTDPAHNLSD
Sbjct:     4 DLPEATVQNILDQESLKWVFVGGKGGVGKTTCSSILAICLASVRSSVLIISTDPAHNLSD 63

Query:    73 AFQQRFTKTPTLVNGFSNLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFA 131
             AFQQRFTK+PTLV GFSNL+AMEVDP+VE ++   T+GMD LFS+LANAIPGIDEAMSFA
Sbjct:    64 AFQQRFTKSPTLVQGFSNLFAMEVDPTVETDDMAGTDGMDGLFSDLANAIPGIDEAMSFA 123

Query:   132 EMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG 191
             EMLKLVQTMDY+ IVFDTAPTGHTLRLLQFP+TLEKGL K+MSLK++FGG++ QM+R+FG
Sbjct:   124 EMLKLVQTMDYATIVFDTAPTGHTLRLLQFPATLEKGLSKLMSLKSRFGGLMTQMSRMFG 183

Query:   192 IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF 251
             ++DEFGEDALLGRLEG+KDVIE+VN+QFKDPD+TTFVCVCIPEFLSLYETERLVQEL KF
Sbjct:   184 MEDEFGEDALLGRLEGLKDVIEQVNRQFKDPDMTTFVCVCIPEFLSLYETERLVQELAKF 243

Query:   252 EIDTHNIIINQVLYDDE 268
             EIDTHNIIINQVLYDDE
Sbjct:   244 EIDTHNIIINQVLYDDE 260

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006820 "anion transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016887 "ATPase activity" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

FB|FBgn0033191 CG1598 [Drosophila melanogaster (taxid:7227)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 149/273 (54%), Positives = 194/273 (71%)

Query:    12 LEIPEGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLS 71
             LE  E S++N++EQDSLKW+F           CSS L++ L++VR SVLIISTDPAHN+S
Sbjct:     5 LEPLEPSLQNLVEQDSLKWIFVGGKGGVGKTTCSSSLAVQLSKVRESVLIISTDPAHNIS 64

Query:    72 DAFQQRFTKTPTLVNGFSNLYAMEVDPS-----VEEE--TGSTEGM---DSLFSELANAI 121
             DAF Q+FTK PT VNGF NL+AME+DP+     + EE   G  E +     +  E+ NA+
Sbjct:    65 DAFDQKFTKVPTKVNGFDNLFAMEIDPNAGLNELPEEYFDGENEALRVSKGVMQEMINAL 124

Query:   122 PGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181
             PGIDEAMS+AE++KLV+ M++S +VFDTAPTGHTLRL+ FP  +EKGL K++ LK K   
Sbjct:   125 PGIDEAMSYAEVMKLVKGMNFSVVVFDTAPTGHTLRLIAFPQVVEKGLGKLLRLKMKVAP 184

Query:   182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241
             +++Q   + G+ D    D L  +L+ M  VI +VN+QFK+PD TTFVCVCI EF SLYET
Sbjct:   185 LLSQFVSMLGMAD-VNADTLSQKLDDMLRVITQVNEQFKNPDQTTFVCVCIAEFFSLYET 243

Query:   242 ERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC 274
             ERLVQELTK  ID HNII+NQ+L+  +  H +C
Sbjct:   244 ERLVQELTKCGIDVHNIIVNQLLFL-QNSHDSC 275

GO:0015446 "arsenite-transmembrane transporting ATPase activity" evidence=ISS

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

WB|WBGene00014025 asna-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 463 (168.0 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 91/172 (52%), Positives = 123/172 (71%)

Query:   105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164
             G + G D L S  A  +PGIDEAMSF EM+KL+ ++D+  +VFDTAPTGHTLRLLQFP+ 
Sbjct:   116 GFSMGKDFLQS-FAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTL 174

Query:   165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDL 224
             LEK   K++SL+  FG M+NQ   +FG+      + ++ ++    + ++++N QFKDP+ 
Sbjct:   175 LEKVFTKILSLQGMFGPMMNQFGGMFGMGGG-SMNEMIEKMTTTLESVKKMNAQFKDPNC 233

Query:   225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
             TTFVCVCI EFLSLYETERL+QEL+K  IDTHNII+NQ+L+ D   +    C
Sbjct:   234 TTFVCVCIAEFLSLYETERLIQELSKQGIDTHNIIVNQLLFPDTDANGTVSC 285

GO:0016887 "ATPase activity" evidence=IEA;IDA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0032024 "positive regulation of insulin secretion" evidence=IMP

UNIPROTKB|P30632 asna-1 "ATPase asna-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 463 (168.0 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
 Identities = 91/172 (52%), Positives = 123/172 (71%)

Query:   105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164
             G + G D L S  A  +PGIDEAMSF EM+KL+ ++D+  +VFDTAPTGHTLRLLQFP+ 
Sbjct:   116 GFSMGKDFLQS-FAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTL 174

Query:   165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDL 224
             LEK   K++SL+  FG M+NQ   +FG+      + ++ ++    + ++++N QFKDP+ 
Sbjct:   175 LEKVFTKILSLQGMFGPMMNQFGGMFGMGGG-SMNEMIEKMTTTLESVKKMNAQFKDPNC 233

Query:   225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
             TTFVCVCI EFLSLYETERL+QEL+K  IDTHNII+NQ+L+ D   +    C
Sbjct:   234 TTFVCVCIAEFLSLYETERLIQELSKQGIDTHNIIVNQLLFPDTDANGTVSC 285

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040625-120 asna1 "arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)" [Danio rerio (taxid:7955)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 139/266 (52%), Positives = 185/266 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E +++NI+EQ SLKW+F           CS  L++ LA VR SVLIISTDPAHN+SDAF 
Sbjct:    19 EPTLKNIIEQKSLKWIFVGGKGGVGKTTCSCSLAVQLAAVRESVLIISTDPAHNISDAFD 78

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    79 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 138

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   139 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 198

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   199 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 257

Query:   247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
             EL K  IDTHNII+NQ+++ D    C
Sbjct:   258 ELAKCRIDTHNIIVNQLVFPDNERPC 283

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

DICTYBASE|DDB_G0293528 arsA "arsenite-translocating ATPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 134/264 (50%), Positives = 191/264 (72%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+  + LKW+F            S  ++I L++V+ SVL+ISTDPAHNLSDAF 
Sbjct:     7 EPTIENIINSEKLKWIFVGGKGGVGKTTTSCSVAIQLSKVKESVLLISTDPAHNLSDAFG 66

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSVEE---ETGSTEGMDSLFSELANAIPGIDEAMSFAE 132
             Q+FTK+PTLV GF+NL+AME+DP+ ++   E   T+       E   AIPGIDEAMSFAE
Sbjct:    67 QKFTKSPTLVEGFTNLFAMEIDPTPDQLAPEFMETQSDGFNLQEFTAAIPGIDEAMSFAE 126

Query:   133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
             ++KLV+++++S +VFDTAPTGHTLRLL  PS L+KG++K +S++  F G+ N ++ + G 
Sbjct:   127 VMKLVKSLEFSVVVFDTAPTGHTLRLLSIPSLLDKGINKFLSMQQNFSGIFNAVSGMMGG 186

Query:   193 DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE 252
             +    E+ + G+++  K VIE +N QFK+PDLTTF+ VCIPEFLS+YETERL+Q+LTK +
Sbjct:   187 NAPSLEN-MEGKIQSTKKVIEEINIQFKNPDLTTFIPVCIPEFLSVYETERLIQQLTKLD 245

Query:   253 IDTHNIIINQVLYDDEGMH-CNCR 275
             ID HN+I+NQ++Y ++    CN R
Sbjct:   246 IDVHNVIVNQIVYPEKDCSLCNAR 269

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0015105 "arsenite transmembrane transporter activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC1142.06 get3 "GET complex ATPase subunit Get3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 138/258 (53%), Positives = 182/258 (70%)

Query:    17 GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
             G++ N+LEQ SLKW+F            S  L+I +++VR SVL+ISTDPAHNLSDAF  
Sbjct:     8 GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67

Query:    77 RFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTEG------MDSLFSELANAIPGIDEAM 128
             +F K    V GF NL AME+DP  S++E T   +       +  +  +LA  IPGIDEA+
Sbjct:    68 KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127

Query:   129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
             +FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MINQM  
Sbjct:   128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187

Query:   189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
             + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct:   188 IMGVNAN--EQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245

Query:   249 TKFEIDTHNIIINQVLYD 266
             T +EIDTHNI++NQ+L D
Sbjct:   246 TSYEIDTHNIVVNQLLLD 263

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006875 "cellular metal ion homeostasis" evidence=IC

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISM

GO:0043529 "GET complex" evidence=ISO

GO:0045048 "protein insertion into ER membrane" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071248 "cellular response to metal ion" evidence=ISO

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

UNIPROTKB|A5PJI5 ASNA1 "ATPase ASNA1" [Bos taurus (taxid:9913)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 137/266 (51%), Positives = 185/266 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
             EL K +IDTHNII+NQ+++ D    C
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPC 289

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O43681 ASNA1 "ATPase ASNA1" [Homo sapiens (taxid:9606)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 137/266 (51%), Positives = 185/266 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
             EL K +IDTHNII+NQ+++ D    C
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPC 289

GO:0016887 "ATPase activity" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005215 "transporter activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015105 "arsenite transmembrane transporter activity" evidence=TAS

UNIPROTKB|F2Z5J4 ASNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 137/266 (51%), Positives = 185/266 (69%)

Query:    16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
             E ++ NI+EQ SLKW+F           CS  L++ L++ R SVLIISTDPAHN+SDAF 
Sbjct:    25 EPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLIISTDPAHNISDAFD 84

Query:    76 QRFTKTPTLVNGFSNLYAMEVDPSV-----EEETGSTEGMDSL----FSELANAIPGIDE 126
             Q+F+K PT V G+ NL+AME+DPS+      +E    + M S+      E  +A PGIDE
Sbjct:    85 QKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDE 144

Query:   127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
             AMS+AE+++LV+ M++S +VFDTAPTGHTLRLL FP+ +E+GL ++M +KN+    I+QM
Sbjct:   145 AMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQM 204

Query:   187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
               + G+ D    D L  +LE    VI  V++QFKDP+ TTF+CVCI EFLSLYETERL+Q
Sbjct:   205 CNMLGLGD-MNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQ 263

Query:   247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
             EL K +IDTHNII+NQ+++ D    C
Sbjct:   264 ELAKCKIDTHNIIVNQLVFPDPEKPC 289

GO:0005524 "ATP binding" evidence=IEA

GO:0071722 "detoxification of arsenic-containing substance" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CM24	GET3_CRYNJ	3, ., 6, ., -, ., -	0.5880	0.9420	0.8	yes	no
O43681	ASNA_HUMAN	3, ., 6, ., -, ., -	0.5522	0.9275	0.7356	yes	no
Q8T662	ASNA_DICDI	3, ., 6, ., -, ., -	0.5492	0.9384	0.7872	yes	no
C5P9K5	GET3_COCP7	3, ., 6, ., -, ., -	0.5507	0.9565	0.8123	N/A	no
Q2UKT0	GET3_ASPOR	3, ., 6, ., -, ., -	0.5398	0.9420	0.7669	yes	no
A5PJI5	ASNA_BOVIN	3, ., 6, ., -, ., -	0.5522	0.9275	0.7356	yes	no
A8N0V8	GET3_COPC7	3, ., 6, ., -, ., -	0.5940	0.9492	0.8036	N/A	no
O54984	ASNA_MOUSE	3, ., 6, ., -, ., -	0.5522	0.9275	0.7356	yes	no
Q4WY07	GET3_ASPFU	3, ., 6, ., -, ., -	0.5471	0.9420	0.7647	yes	no
Q5TRE7	ASNA_ANOGA	3, ., 6, ., -, ., -	0.5785	0.9601	0.7863	yes	no
Q0IIZ2	ASNA_XENTR	3, ., 6, ., -, ., -	0.5387	0.9166	0.7397	yes	no
Q9P7F8	GET3_SCHPO	3, ., 6, ., -, ., -	0.5639	0.9275	0.7781	yes	no
A0E7A5	ASNA2_PARTE	3, ., 6, ., -, ., -	0.5384	0.9456	0.8030	N/A	no
Q7JWD3	ASNA_DROME	3, ., 6, ., -, ., -	0.5946	0.9166	0.7529	yes	no
Q6IQE5	ASNA_DANRE	3, ., 6, ., -, ., -	0.5480	0.9710	0.7859	yes	no
Q28YJ2	ASNA_DROPS	3, ., 6, ., -, ., -	0.5766	0.9492	0.7797	yes	no
B6H443	GET3_PENCW	3, ., 6, ., -, ., -	0.5481	0.9311	0.7558	yes	no
B6K052	GET3_SCHJY	3, ., 6, ., -, ., -	0.5498	0.9456	0.8055	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam02374	304	pfam02374, ArsA_ATPase, Anion-transporting ATPase	1e-104
COG0003	322	COG0003, ArsA, Predicted ATPase involved in chromo	3e-71
TIGR00345	284	TIGR00345, GET3_arsA_TRC40, transport-energizing A	4e-67
cd02035	217	cd02035, ArsA, ArsA ATPase functionas as an efflux	6e-67
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	2e-35
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	3e-13
COG1192	259	COG1192, Soj, ATPases involved in chromosome parti	3e-08
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	1e-06
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	9e-06
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	2e-05
pfam13614	145	pfam13614, AAA_31, AAA domain	2e-05
cd02042	104	cd02042, ParA, ParA and ParB of Caulobacter cresce	8e-05
cd02036	179	cd02036, MinD, Bacterial cell division requires th	9e-05
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	1e-04
PRK13185	270	PRK13185, chlL, protochlorophyllide reductase iron	3e-04
cd02032	267	cd02032, Bchl_like, This family of proteins contai	3e-04
cd02117	212	cd02117, NifH_like, This family contains the NifH	4e-04
COG0455	262	COG0455, flhG, Antiactivator of flagellar biosynth	5e-04
COG3640	255	COG3640, CooC, CO dehydrogenase maturation factor	6e-04
TIGR01281	268	TIGR01281, DPOR_bchL, light-independent protochlor	0.002
COG1348	278	COG1348, NifH, Nitrogenase subunit NifH (ATPase) [	0.002
CHL00072	290	CHL00072, chlL, photochlorophyllide reductase subu	0.002
TIGR01969	251	TIGR01969, minD_arch, cell division ATPase MinD, a	0.003
TIGR03371	246	TIGR03371, cellulose_yhjQ, cellulose synthase oper	0.003
pfam00142	272	pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster b	0.003

>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase

 Score =  304 bits (781), Expect = e-104
 Identities = 108/253 (42%), Positives = 152/253 (60%), Gaps = 14/253 (5%)

Query: 28  LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNG 87
           ++W+F GGKGGVGKTT S   ++ L+E    VL++STDPAH+LSD+F Q+F   PT + G
Sbjct: 1   MRWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLSDSFNQKFGHEPTKIKG 60

Query: 88  FSNLYAMEVDPSVEEE------------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLK 135
             NL AME+DP +E E                + ++ + +E  +++PGIDE  SF E  K
Sbjct: 61  VENLSAMEIDPQMELEEYRGEVQDPINAVLGLDMLEGILAEELSSLPGIDEIASFDEFKK 120

Query: 136 LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDE 195
            +   +Y  ++FDTAPTGHTLRLL  P+ L   L+K++ LKN+ G +      +      
Sbjct: 121 YMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYLEKIVKLKNQIGPLAKPFKGMGMGGSC 180

Query: 196 FGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT 255
             E   L  LE  K+ IE+  +   DP+ T+F  VCIPE +SLYETER +QEL K+ ID 
Sbjct: 181 LPE--ALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV 238

Query: 256 HNIIINQVLYDDE 268
             +I+NQVL + E
Sbjct: 239 DAVIVNQVLPETE 251

This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304

>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score =  221 bits (566), Expect = 3e-71
 Identities = 96/254 (37%), Positives = 140/254 (55%), Gaps = 17/254 (6%)

Query: 27  SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
             + VF  GKGGVGKTT ++  ++ LAE    VL++STDPAH+L D F       P  V 
Sbjct: 1   MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG 60

Query: 87  GFSNLYAMEVDPSVE-EETGS-----------TEGMDSLFSELANAIPGIDEAMSFAEML 134
              NL A+E+DP    EE              T G+  ++++    +PGIDEA++  ++L
Sbjct: 61  P--NLDALELDPEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKIL 118

Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
           +   + +Y  IV DTAPTGHTLRLL  P  L   L+K+   K +   M+  +  L     
Sbjct: 119 EYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLF--KPRRKRMVKALKSLSTAAG 176

Query: 195 -EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI 253
               +DA+L  LE +K+ I  V +   +PD T+F  V IPE LSLYET+R V+ L+ + I
Sbjct: 177 SPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGI 236

Query: 254 DTHNIIINQVLYDD 267
               +I+N++L D+
Sbjct: 237 PVDAVIVNKILPDE 250

Length = 322

>gnl|CDD|232932 TIGR00345, GET3_arsA_TRC40, transport-energizing ATPase, TRC40/GET3/ArsA family

 Score =  210 bits (535), Expect = 4e-67
 Identities = 96/237 (40%), Positives = 132/237 (55%), Gaps = 20/237 (8%)

Query: 45  SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--- 101
           S+  +I LAE    VL++STDPAH+LSD F+Q    TPT V G  NL A+E+DP      
Sbjct: 2   SAATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEE 61

Query: 102 ---------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV--QTMDYSCIVFDTA 150
                    +       M     E A   PGIDE  +F E LK +     ++  ++FDTA
Sbjct: 62  YRAKLVEQIKGNLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTA 121

Query: 151 PTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKD 210
           PTGHTLRLLQ P  L   L+K + +++K G M     +LF    E  +D  L +LE +K+
Sbjct: 122 PTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMA----KLFMGAGE--DDEALEKLEELKE 175

Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267
            IE   +   DP+ T+FV V IPE +SLYE+ER  +EL K+ I    +I+NQVL ++
Sbjct: 176 QIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN 232

Members of this family are ATPases that energize transport, although with different partner proteins for different functions. Recent findings show that TRC40 (GET3 in yeast) in involved in the insertion of tail-anchored membrane proteins in eukaryotes. A similar function is expected for members of this family in archaea. However, the earliest discovery of a function for this protein family is ArsA, an arsenic resistance protein that partners with ArsB (see pfam02040) for As(III) efflux [Hypothetical proteins, Conserved]. Length = 284

>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

 Score =  207 bits (528), Expect = 6e-67
 Identities = 81/246 (32%), Positives = 104/246 (42%), Gaps = 70/246 (28%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH--------NLSDAFQQRFTKT 81
            +F  GKGGVGKTT ++  ++ LAE    VL++STDPAH        NLSDAF       
Sbjct: 1   VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIV----- 55

Query: 82  PTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMD 141
                   NLY  EVD +   E     G   L  ELA A+PGI+E  S   + +      
Sbjct: 56  -EDPEIAPNLYREEVDATRRVERAW-GGEGGLMLELAAALPGIEELASLLAVFREFSEGL 113

Query: 142 YSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDAL 201
           Y  IVFDTAPTGH         TL                                   L
Sbjct: 114 YDVIVFDTAPTGH---------TL----------------------------------RL 130

Query: 202 LGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261
           L            V +   DP+ T+F  V +PE L LYETER + EL  + I    +++N
Sbjct: 131 L------------VRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVN 178

Query: 262 QVLYDD 267
           +VL  +
Sbjct: 179 RVLPAE 184

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. Length = 217

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score =  133 bits (336), Expect = 2e-35
 Identities = 79/262 (30%), Positives = 114/262 (43%), Gaps = 44/262 (16%)

Query: 29  KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
            ++F  GKGGVGKT+ +   +I LA+    VL++STDPA N+   F Q      T + G 
Sbjct: 4   PYLFFTGKGGVGKTSIACATAINLADQGKRVLLVSTDPASNVGQVFGQTIGNKITAIAGV 63

Query: 89  SNLYAMEVDP----------SVE--EETGSTEGMDSLFSELANA----IPGIDEAMSFAE 132
             L+A+E+DP           V+        + + S+  +L+ A    I   DE      
Sbjct: 64  PGLFALEIDPQAAAQAYRARIVDPVRGVLPDDVVSSIEEQLSGACTTEIAAFDEFTGLLT 123

Query: 133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
             +L Q  D+  I+FDTAPTGHT+RLLQ P      LD      N  G            
Sbjct: 124 DAELTQDFDH--IIFDTAPTGHTIRLLQLPGAWSDFLDT-----NPNGA----------- 165

Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFK---DPDLTTFVCVCIPEFLSLYETERLVQELT 249
                  + LG L G++    +  K  +   DP+ T  + V  P+  +L E  R  QEL 
Sbjct: 166 -------SCLGPLAGLEKQRAQYAKAVEALSDPERTRLILVARPQKSTLLEVARTHQELA 218

Query: 250 KFEIDTHNIIINQVLYDDEGMH 271
              +    ++IN VL   E   
Sbjct: 219 AIGLKNQYLVINGVLPPTEASD 240

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 62/257 (24%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
           + +     +   GKGGVGKTT ++ +++ LA     V + ++DPA +LS       T T 
Sbjct: 316 IAKSEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSDPAAHLS------VTLTG 369

Query: 83  TLVNGFSNLYAMEVDPSVEEE---------TGST---EGMDSLFSELANAIPGIDEAMSF 130
           +L    +NL    +DP  E E          G     +G   L  +L +  P  +E   F
Sbjct: 370 SL----NNLQVSRIDPKQETERYRQEVLATKGKELDEDGKAYLEEDLRS--PCTEEIAVF 423

Query: 131 AEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
               ++++      +V DTAPTGHTL LL       + +++ M                 
Sbjct: 424 QAFSRIIREAGDRFVVMDTAPTGHTLLLLDATGAYHREVERKMG---------------- 467

Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNK---QFKDPDLTTFVCVCIPEFLSLYETERLVQE 247
                              D  E V     Q +DP+ T  + V +PE   + E  RL ++
Sbjct: 468 -------------------DTPEHVTTPMMQLQDPERTKVLLVTLPETTPVLEAARLQED 508

Query: 248 LTKFEIDTHNIIINQVL 264
           L +  I+    +IN  L
Sbjct: 509 LRRAGIEPWWWVINNSL 525

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 11/129 (8%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
                KGGVGKTT +  L+  LA+     VL+I  DP  +L+     R      L   ++
Sbjct: 6   AVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDL---YN 62

Query: 90  NLYAMEVDPSVEEETGSTEGMD------SLFSELANAIPGIDEAMSFAEMLKLVQTMDYS 143
            L  ++  P + + T   EG+D       L       +  + + +    +L  V+  DY 
Sbjct: 63  LLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYD 121

Query: 144 CIVFDTAPT 152
            I+ DT P+
Sbjct: 122 YIIIDTPPS 130

Length = 259

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 15/133 (11%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP-TLVNGF 88
               G KGGVGKTT ++ L+  LA+    VL+I  DP  N S    +     P  L    
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVD 60

Query: 89  SNLYAMEVDPSVEEETGSTEGMDSL-----FSELANA----IPGIDEAMSFAEMLKLVQT 139
           +          V      +  +D L        L N     I            L+ +  
Sbjct: 61  AQALQAIAAAIVP-----SRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIK 115

Query: 140 MDYSCIVFDTAPT 152
           + Y  ++ D  P 
Sbjct: 116 LAYDYVIIDGPPG 128

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62
          + V GKGGVGKTT ++ L+  LA+    VL+I
Sbjct: 2  IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
          + GKGGVGKTT +++L+  LAE    VL I  DP  +L +  
Sbjct: 4  ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD-DLPERL 44

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|222264 pfam13614, AAA_31, AAA domain

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 30  WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
                  GG GKTT +  L+  LAE  P VL +  +            F        G S
Sbjct: 3   IGVYSPVGGEGKTTFALNLAQSLAEEGPKVLYLDLEEYS----GDLALFLGLEP--KGLS 56

Query: 90  N-LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM--DYSCIV 146
           + LY ++    ++       G     +   N        +S  E  +L++ +   Y  IV
Sbjct: 57  DLLYYLK---RLDSMLIQAMGGLDYLAPPRNPED--LREVSPEEWEQLLERLRERYDVIV 111

Query: 147 FDTAP 151
            D  P
Sbjct: 112 LDLGP 116

This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 145

>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
               KGGVGKTT +  L+  LA     VL+I  DP
Sbjct: 3  AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP 38

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. Length = 104

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67
          V   GKGGVGKTT ++ L   LA++   V++I  D  
Sbjct: 3  VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
            GKGGVGKT  S+ L++ LA++   VL++  D
Sbjct: 5  TSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
          V GKGG+GK+T SS LS   A++   VL I  DP H+ +      FT T  LV
Sbjct: 7  VYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDST------FTLTGKLV 53

Length = 270

>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and chlL

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T SS LS+ LA+    VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD 41

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. Length = 267

>gnl|CDD|239034 cd02117, NifH_like, This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
          GKGG+GK+T S  LS  LAE+   VL +  DP  
Sbjct: 7  GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. Length = 212

>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 32 FVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDPA-HNLSDAF 74
           V GKGGVGKTT ++ L   LA +    VL+I  D    NLS   
Sbjct: 7  VVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLL 51

Length = 262

>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAF 74
          + GKGGVGKTT +++L   L      +VL++  DP  NL +A 
Sbjct: 5  ITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47

Length = 255

>gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T SS LS+  A++   VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 268

>gnl|CDD|224267 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
          GKGG+GK+T S  L+  LAE+   VLI+  DP  
Sbjct: 8  GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKA 41

Length = 278

>gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          V GKGG+GK+T S  +SI LA     VL I  DP H+
Sbjct: 5  VYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41

Length = 290

>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLS 71
              GKGG GKTT ++ L + LA++   VL +  D    NL 
Sbjct: 4  TIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLE 45

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251

>gnl|CDD|234188 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90
          V  +GGVGKTT ++ L+  L  +   VL I  DP + L   F   ++          N
Sbjct: 7  VSVRGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLN 64

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 246

>gnl|CDD|201032 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
          GKGG+GK+T +   S  LAE+   VLI+  DP  +
Sbjct: 7  GKGGIGKSTTTQNTSAALAEMGKKVLIVGCDPKAD 41

Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG2825	323	consensus Putative arsenite-translocating ATPase [	100.0
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	100.0
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	100.0
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	100.0
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	99.97
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.94
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	99.93
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.93
PRK11670	369	antiporter inner membrane protein; Provisional	99.93
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.93
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.92
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.92
CHL00175	281	minD septum-site determining protein; Validated	99.92
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.92
PHA02519	387	plasmid partition protein SopA; Reviewed	99.92
COG2894	272	MinD Septum formation inhibitor-activating ATPase	99.92
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.92
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	99.91
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.91
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.91
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.9
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	99.9
PRK13232	273	nifH nitrogenase reductase; Reviewed	99.9
cd02117	212	NifH_like This family contains the NifH (iron prot	99.9
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	99.9
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	99.9
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.9
PHA02518	211	ParA-like protein; Provisional	99.9
PRK11519	719	tyrosine kinase; Provisional	99.9
PRK10037	250	cell division protein; Provisional	99.89
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.89
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.89
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	99.89
PRK10818	270	cell division inhibitor MinD; Provisional	99.89
PRK13235	274	nifH nitrogenase reductase; Reviewed	99.88
cd02040	270	NifH NifH gene encodes component II (iron protein)	99.88
cd02032	267	Bchl_like This family of proteins contains bchL an	99.88
PRK13233	275	nifH nitrogenase reductase; Reviewed	99.88
CHL00072	290	chlL photochlorophyllide reductase subunit L	99.88
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	99.88
PRK13230	279	nitrogenase reductase-like protein; Reviewed	99.88
cd03110	179	Fer4_NifH_child This protein family's function is	99.87
cd02036	179	MinD Bacterial cell division requires the formatio	99.87
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.87
TIGR01287	275	nifH nitrogenase iron protein. This model describe	99.86
PRK13234	295	nifH nitrogenase reductase; Reviewed	99.86
PRK13236	296	nitrogenase reductase; Reviewed	99.86
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	99.86
PRK13231	264	nitrogenase reductase-like protein; Reviewed	99.86
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.85
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	99.81
cd03111	106	CpaE_like This protein family consists of proteins	99.81
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.79
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.78
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.75
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.75
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.74
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.74
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.69
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.59
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.58
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.56
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.53
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.47
cd03114	148	ArgK-like The function of this protein family is u	99.47
cd02034	116	CooC The accessory protein CooC, which contains a	99.46
PRK10867	433	signal recognition particle protein; Provisional	99.43
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.43
PRK13886	241	conjugal transfer protein TraL; Provisional	99.42
TIGR00959	428	ffh signal recognition particle protein. This mode	99.4
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.39
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.39
PRK10416	318	signal recognition particle-docking protein FtsY;	99.38
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.33
PRK13768	253	GTPase; Provisional	99.32
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.3
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.27
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.23
PRK14974	336	cell division protein FtsY; Provisional	99.14
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	99.13
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	99.11
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	99.1
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.07
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	99.04
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	99.04
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	99.03
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.02
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.92
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.89
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.82
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.8
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.76
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	98.76
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.76
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	98.74
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.65
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.62
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.61
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.59
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.58
PRK05632	684	phosphate acetyltransferase; Reviewed	98.51
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.5
PRK12374	231	putative dithiobiotin synthetase; Provisional	98.46
KOG1533	290	consensus Predicted GTPase [General function predi	98.44
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	98.43
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.43
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.42
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.37
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.37
KOG0781	587	consensus Signal recognition particle receptor, al	98.35
PRK00784	488	cobyric acid synthase; Provisional	98.2
COG1341	398	Predicted GTPase or GTP-binding protein [General f	98.18
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.15
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.13
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.11
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.08
TIGR00313	475	cobQ cobyric acid synthase CobQ.	98.07
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.04
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.98
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.97
PRK06067	234	flagellar accessory protein FlaH; Validated	97.95
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	97.95
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.91
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.91
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.89
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	97.85
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.82
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.82
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.76
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	97.73
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.72
PRK00889	175	adenylylsulfate kinase; Provisional	97.71
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.71
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.7
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.68
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.67
PRK09354	349	recA recombinase A; Provisional	97.66
PRK07667	193	uridine kinase; Provisional	97.66
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.63
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.62
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.61
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.59
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.58
PRK04296	190	thymidine kinase; Provisional	97.58
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	97.55
smart00382	148	AAA ATPases associated with a variety of cellular	97.55
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.54
PRK05973	237	replicative DNA helicase; Provisional	97.52
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.5
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.49
PRK08233	182	hypothetical protein; Provisional	97.47
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.46
PRK06696	223	uridine kinase; Validated	97.45
PRK07952	244	DNA replication protein DnaC; Validated	97.45
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.43
PRK03846	198	adenylylsulfate kinase; Provisional	97.43
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.38
PRK04328	249	hypothetical protein; Provisional	97.38
PRK11823	446	DNA repair protein RadA; Provisional	97.37
PHA02542	473	41 41 helicase; Provisional	97.37
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.37
PF13479	213	AAA_24: AAA domain	97.36
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.35
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.33
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.31
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.3
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.3
PF13245	76	AAA_19: Part of AAA domain	97.3
PRK09302	509	circadian clock protein KaiC; Reviewed	97.3
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.28
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	97.26
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.25
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.24
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.21
PTZ00035	337	Rad51 protein; Provisional	97.21
PRK09302	509	circadian clock protein KaiC; Reviewed	97.19
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.17
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.17
PHA00729	226	NTP-binding motif containing protein	97.17
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.17
PRK06762	166	hypothetical protein; Provisional	97.17
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.15
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.14
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.11
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.1
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.09
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.09
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.08
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.06
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.05
PRK05541	176	adenylylsulfate kinase; Provisional	97.01
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.99
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	96.99
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.98
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.95
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	96.95
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	96.94
cd03116	159	MobB Molybdenum is an essential trace element in t	96.93
PRK06526	254	transposase; Provisional	96.92
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.91
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.9
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.89
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.88
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.87
PRK05480	209	uridine/cytidine kinase; Provisional	96.85
PRK05439	311	pantothenate kinase; Provisional	96.85
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.85
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.84
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.83
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.83
PRK15453	290	phosphoribulokinase; Provisional	96.83
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.8
PRK00089	292	era GTPase Era; Reviewed	96.8
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.8
PRK12377	248	putative replication protein; Provisional	96.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.79
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.78
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	96.78
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.78
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	96.77
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	96.74
PRK08084	235	DNA replication initiation factor; Provisional	96.73
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.72
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.7
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.68
PRK05595	444	replicative DNA helicase; Provisional	96.65
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.63
PRK08506	472	replicative DNA helicase; Provisional	96.61
COG4240	300	Predicted kinase [General function prediction only	96.6
PRK09183	259	transposase/IS protein; Provisional	96.6
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.58
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.57
PF13173	128	AAA_14: AAA domain	96.52
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.5
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.49
PRK06749	428	replicative DNA helicase; Provisional	96.49
PRK06835	329	DNA replication protein DnaC; Validated	96.48
PRK08939	306	primosomal protein DnaI; Reviewed	96.48
PRK08760	476	replicative DNA helicase; Provisional	96.46
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.46
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.46
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	96.44
PRK08727	233	hypothetical protein; Validated	96.44
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.44
COG1159	298	Era GTPase [General function prediction only]	96.43
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.43
PRK08006	471	replicative DNA helicase; Provisional	96.42
PF05729	166	NACHT: NACHT domain	96.4
PRK00131	175	aroK shikimate kinase; Reviewed	96.39
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.37
PRK06893	229	DNA replication initiation factor; Validated	96.37
PRK05642	234	DNA replication initiation factor; Validated	96.36
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	96.35
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.35
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	96.32
PRK08181	269	transposase; Validated	96.29
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.28
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.27
PRK08840	464	replicative DNA helicase; Provisional	96.25
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	96.25
PRK06547	172	hypothetical protein; Provisional	96.25
PRK05748	448	replicative DNA helicase; Provisional	96.25
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.25
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.23
PRK06904	472	replicative DNA helicase; Validated	96.22
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.2
PF12846	304	AAA_10: AAA-like domain	96.2
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.2
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.16
PRK06321	472	replicative DNA helicase; Provisional	96.16
cd03112	158	CobW_like The function of this protein family is u	96.15
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.14
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.13
PRK09165	497	replicative DNA helicase; Provisional	96.12
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	96.11
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	96.1
PRK06921	266	hypothetical protein; Provisional	96.09
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.06
PRK08116	268	hypothetical protein; Validated	96.05
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.05
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	96.03
PRK06217	183	hypothetical protein; Validated	96.03
PRK06851	367	hypothetical protein; Provisional	96.02
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.02
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	96.01
PLN03046	460	D-glycerate 3-kinase; Provisional	95.99
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	95.98
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.98
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.95
PRK07004	460	replicative DNA helicase; Provisional	95.94
PRK12339	197	2-phosphoglycerate kinase; Provisional	95.93
PRK12740	668	elongation factor G; Reviewed	95.91
PRK05636	505	replicative DNA helicase; Provisional	95.9
PF00004	132	AAA: ATPase family associated with various cellula	95.9
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.9
PLN02796	347	D-glycerate 3-kinase	95.88
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.84
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.81
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.8
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.78
PHA02530	300	pseT polynucleotide kinase; Provisional	95.77
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	95.68
cd00881	189	GTP_translation_factor GTP translation factor fami	95.66
PRK05380	533	pyrG CTP synthetase; Validated	95.61
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	95.58
PRK06761	282	hypothetical protein; Provisional	95.57
PRK00093	435	GTP-binding protein Der; Reviewed	95.54
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	95.54
PRK08118	167	topology modulation protein; Reviewed	95.52
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	95.48
PRK07933	213	thymidylate kinase; Validated	95.48
PRK04040	188	adenylate kinase; Provisional	95.47
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	95.42
COG1855	604	ATPase (PilT family) [General function prediction	95.41
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	95.4
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.38
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.37
COG2403	449	Predicted GTPase [General function prediction only	95.36
PF06418	276	CTP_synth_N: CTP synthase N-terminus; InterPro: IP	95.36
PTZ00301	210	uridine kinase; Provisional	95.36
PF02572	172	CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase	95.32
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	95.32
PRK15494	339	era GTPase Era; Provisional	95.29
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.27
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.25
PRK13947	171	shikimate kinase; Provisional	95.24
TIGR00376	637	DNA helicase, putative. The gene product may repre	95.24
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.24
PRK13946	184	shikimate kinase; Provisional	95.19
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.16
PLN02924	220	thymidylate kinase	95.15
PRK03839	180	putative kinase; Provisional	95.14
PRK00698	205	tmk thymidylate kinase; Validated	95.12
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.1
PLN02327	557	CTP synthase	95.1
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.08
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	95.08
PRK00049	396	elongation factor Tu; Reviewed	95.07
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	95.05
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.97
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	94.97
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	94.96
PRK07261	171	topology modulation protein; Provisional	94.91
PRK06851	367	hypothetical protein; Provisional	94.9
PLN02200	234	adenylate kinase family protein	94.9
PRK07773	886	replicative DNA helicase; Validated	94.88
PLN02348	395	phosphoribulokinase	94.86
PLN03127	447	Elongation factor Tu; Provisional	94.78
PRK13948	182	shikimate kinase; Provisional	94.76
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	94.75
PRK03731	171	aroL shikimate kinase II; Reviewed	94.74
PRK12422	445	chromosomal replication initiation protein; Provis	94.71
PRK13973	213	thymidylate kinase; Provisional	94.7
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	94.65
PRK12338	319	hypothetical protein; Provisional	94.63
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	94.6
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	94.6
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.56
PRK13808	333	adenylate kinase; Provisional	94.51
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	94.47
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.46
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	94.46
PRK14528	186	adenylate kinase; Provisional	94.43
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	94.42
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	94.41
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	94.39
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	94.36
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	94.36
PLN03025	319	replication factor C subunit; Provisional	94.32
PRK01184	184	hypothetical protein; Provisional	94.3
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.28
PLN03126	478	Elongation factor Tu; Provisional	94.24
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.22
CHL00071	409	tufA elongation factor Tu	94.22
PRK10536	262	hypothetical protein; Provisional	94.21
PRK14527	191	adenylate kinase; Provisional	94.2
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	94.18
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	94.1
PRK14730	195	coaE dephospho-CoA kinase; Provisional	94.01
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.0
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	93.97
CHL00181	287	cbbX CbbX; Provisional	93.97
TIGR00503	527	prfC peptide chain release factor 3. This translat	93.94
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	93.93
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	93.93
COG2256	436	MGS1 ATPase related to the helicase subunit of the	93.9
PRK12735	396	elongation factor Tu; Reviewed	93.9
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	93.86
PRK00625	173	shikimate kinase; Provisional	93.83
PRK12402	337	replication factor C small subunit 2; Reviewed	93.82
PRK00149	450	dnaA chromosomal replication initiation protein; R	93.82
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	93.81
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	93.79
PRK12739	691	elongation factor G; Reviewed	93.77
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	93.75
PRK09866	741	hypothetical protein; Provisional	93.72
PRK08356	195	hypothetical protein; Provisional	93.71
CHL00095	821	clpC Clp protease ATP binding subunit	93.7
PRK12736	394	elongation factor Tu; Reviewed	93.69
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	93.69
PRK13764	602	ATPase; Provisional	93.66
PRK14531	183	adenylate kinase; Provisional	93.62
PRK14088	440	dnaA chromosomal replication initiation protein; P	93.61
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	93.59
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	93.56
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	93.56
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	93.54
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.53
PLN02759	637	Formate--tetrahydrofolate ligase	93.53
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.52
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	93.5
PRK00007	693	elongation factor G; Reviewed	93.5
PRK04195	482	replication factor C large subunit; Provisional	93.5
PRK13695	174	putative NTPase; Provisional	93.48
PRK00741	526	prfC peptide chain release factor 3; Provisional	93.46
PLN02165	334	adenylate isopentenyltransferase	93.45
PRK12337	475	2-phosphoglycerate kinase; Provisional	93.4
TIGR02760	1960	TraI_TIGR conjugative transfer relaxase protein Tr	93.37
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.34
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.32
PLN02422	232	dephospho-CoA kinase	93.27
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	93.26
PRK05057	172	aroK shikimate kinase I; Reviewed	93.23
PRK14532	188	adenylate kinase; Provisional	93.22
PRK02496	184	adk adenylate kinase; Provisional	93.2
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	93.18
PRK14733	204	coaE dephospho-CoA kinase; Provisional	93.17
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	93.17
PRK13975	196	thymidylate kinase; Provisional	93.16
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	93.13
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	93.13
PRK13949	169	shikimate kinase; Provisional	93.1
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.04
PRK04182	180	cytidylate kinase; Provisional	93.04
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	92.97
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	92.92
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	92.89
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	92.86
TIGR03172	232	probable selenium-dependent hydroxylase accessory	92.81
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	92.79
PRK00440	319	rfc replication factor C small subunit; Reviewed	92.78
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	92.78
PRK14734	200	coaE dephospho-CoA kinase; Provisional	92.69
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	92.68
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	92.63
PRK07429	327	phosphoribulokinase; Provisional	92.62
PRK14530	215	adenylate kinase; Provisional	92.6
TIGR03783	829	Bac_Flav_CT_G Bacteroides conjugation system ATPas	92.6
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	92.59
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	92.54
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	92.52
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	92.51
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	92.5
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	92.49
PRK13976	209	thymidylate kinase; Provisional	92.48
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	92.48
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	92.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	92.41
PRK14731	208	coaE dephospho-CoA kinase; Provisional	92.41
PF13555	62	AAA_29: P-loop containing region of AAA domain	92.4
PRK00279	215	adk adenylate kinase; Reviewed	92.39
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	92.39
KOG3062	281	consensus RNA polymerase II elongator associated p	92.38
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	92.38
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	92.36
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	92.34
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	92.3
PRK13342	413	recombination factor protein RarA; Reviewed	92.26
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	92.25
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	92.24
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	92.23
PRK14738	206	gmk guanylate kinase; Provisional	92.21
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	92.2
PTZ00451	244	dephospho-CoA kinase; Provisional	92.17
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	92.14
TIGR00485	394	EF-Tu translation elongation factor TU. This align	92.1
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	92.07
KOG2878	282	consensus Predicted kinase [General function predi	92.02
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	92.0
PLN02840	421	tRNA dimethylallyltransferase	91.97
PRK13351	687	elongation factor G; Reviewed	91.96
PRK03003	472	GTP-binding protein Der; Reviewed	91.91
TIGR02746	797	TraC-F-type type-IV secretion system protein TraC.	91.8
PRK10865	857	protein disaggregation chaperone; Provisional	91.78
PTZ00112	1164	origin recognition complex 1 protein; Provisional	91.74
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	91.73
PTZ00088	229	adenylate kinase 1; Provisional	91.61
PLN03210	1153	Resistant to P. syringae 6; Provisional	91.59
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	91.54
PF07726	131	AAA_3: ATPase family associated with various cellu	91.54
TIGR03754	643	conj_TOL_TraD conjugative coupling factor TraD, TO	91.51
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.5
KOG1805	1100	consensus DNA replication helicase [Replication, r	91.48
PLN02459	261	probable adenylate kinase	91.42
PRK13721	844	conjugal transfer ATP-binding protein TraC; Provis	91.38
PRK00300	205	gmk guanylate kinase; Provisional	91.37
PLN02748	468	tRNA dimethylallyltransferase	91.36
PLN02318	656	phosphoribulokinase/uridine kinase	91.32
PRK14086	617	dnaA chromosomal replication initiation protein; P	91.3

>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-44  Score=295.10  Aligned_cols=258  Identities=67%  Similarity=1.089  Sum_probs=235.7

Q ss_pred             cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceee
Q 023886           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM   94 (276)
Q Consensus        15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~   94 (276)
                      +.+++++++++...+++|+.|||||||||+++.||..+|+.+.+||+|..||.+|+++.|+.+....++.++|+++|++.
T Consensus         6 le~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAM   85 (323)
T KOG2825|consen    6 LEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAM   85 (323)
T ss_pred             cchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheee
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcccc-cccC-------ccCc--chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           95 EVDPSVEE-ETGS-------TEGM--DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        95 ~~~~~~~~-~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      +++|+... +++.       +.+.  .....++....||.+++..+.+++..++..+||.||+||+|++++++++.+|..
T Consensus        86 EIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~  165 (323)
T KOG2825|consen   86 EIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTT  165 (323)
T ss_pred             ecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchH
Confidence            99998766 2211       1111  345667788889999999999999999988999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                      +++++.+++++..++.+++|....++|. .....+++..+++..++..++++++|+||..++++.|++|+..++.|++|+
T Consensus       166 lek~lgKl~~l~~k~~pm~sq~~sm~g~-~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRl  244 (323)
T KOG2825|consen  166 LEKGLGKLLSLKNKIGPMLSQMGSMFGM-EDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERL  244 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHH
Confidence            9999999999999999999999999884 234456788999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcCeEEEccccCCCCCCCCC
Q 023886          245 VQELTKFEIDTHNIIINQVLYDDEGMHCN  273 (276)
Q Consensus       245 ~~~l~~~~~~~~g~vvN~~~~~~~~~~~~  273 (276)
                      ++.|.++++.+..+|||+++.+++..+|+
T Consensus       245 iqeL~k~~idthnIIVNQLL~~~~~~~ck  273 (323)
T KOG2825|consen  245 IQELAKQGIDTHNIIVNQLLFPDNEVSCK  273 (323)
T ss_pred             HHHHHhcCCcccceeeeeccCCCCccchH
Confidence            99999999999999999999999878886

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=100.00  E-value=4.5e-41  Score=296.29  Aligned_cols=241  Identities=39%  Similarity=0.668  Sum_probs=199.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc--
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET--  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~--  104 (276)
                      +|++|++|||||||||+|+++|.++|++|+||||++.||.+++++.||.+...+++.+.+.++|++.++++...+ ++  
T Consensus         1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~   80 (305)
T PF02374_consen    1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWE   80 (305)
T ss_dssp             -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHH
T ss_pred             CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999988888888888899999999987665 21  


Q ss_pred             ------cCc---cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886          105 ------GST---EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL  175 (276)
Q Consensus       105 ------~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~  175 (276)
                            ...   .....+...+....||+++...|.++.+.+..++||+|||||||++++++++.+|..+.+|++++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l~~~  160 (305)
T PF02374_consen   81 EVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRLLKL  160 (305)
T ss_dssp             HHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHHHHH
Confidence                  111   11223445566677999999999999999987799999999999999999999999999999999999


Q ss_pred             HHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCc
Q 023886          176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT  255 (276)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~  255 (276)
                      .+++.+..+++... +. .....+.+++.+...++.++++++.+.|+..+++++|++|+..++.|++++++.|+.+|+++
T Consensus       161 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v  238 (305)
T PF02374_consen  161 RRKIRSLARPLSGL-GL-GAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGIPV  238 (305)
T ss_dssp             HHCHHHHHHHHCHS-HC-CHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EE
T ss_pred             HHhhcchhhhhhcc-cc-cccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence            98888877766441 11 02222356688888999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEccccCCCCCC
Q 023886          256 HNIIINQVLYDDEGM  270 (276)
Q Consensus       256 ~g~vvN~~~~~~~~~  270 (276)
                      .++|+||++|++...
T Consensus       239 ~~vVvNrvlp~~~~~  253 (305)
T PF02374_consen  239 DAVVVNRVLPEEEDD  253 (305)
T ss_dssp             EEEEEEEE-TTCSTT
T ss_pred             CeEEEEccccccccc
Confidence            999999998887554

...

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.9e-36  Score=266.24  Aligned_cols=236  Identities=39%  Similarity=0.635  Sum_probs=202.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc--
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET--  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~--  104 (276)
                      .+|+|++|||||||||+|+++|..+|+.|+|||+|..||.+++++.|+.+.+..+..+.  +++.+.++++.... ++  
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~--~nL~a~eiD~~~~l~ey~~   79 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG--PNLDALELDPEKALEEYWD   79 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC--CCCceeeecHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999997766665554  89999999987765 11  


Q ss_pred             ---------cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHH-
Q 023886          105 ---------GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS-  174 (276)
Q Consensus       105 ---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~-  174 (276)
                               .....+.....+.....||+++...|.++.+.+..++||+||+||||++++++++.+|..+++|++++.. 
T Consensus        80 ~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~  159 (322)
T COG0003          80 EVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKP  159 (322)
T ss_pred             HHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhh
Confidence                     2222334555666677899999999999999998889999999999999999999999999999999886 


Q ss_pred             HHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCC
Q 023886          175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID  254 (276)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~  254 (276)
                      ....+......+..+.+.  ..+.+..+..++...+...++++.+.++..+.+.+|++|+..++.|+.++...+.+++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~  237 (322)
T COG0003         160 RRKRMVKALKSLSTAAGS--PLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIP  237 (322)
T ss_pred             HHHHHHHhhhhcccccCC--cCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCc
Confidence            444444444455555554  333667789999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEEccccCCC
Q 023886          255 THNIIINQVLYDD  267 (276)
Q Consensus       255 ~~g~vvN~~~~~~  267 (276)
                      +.++++|++.|++
T Consensus       238 v~~vi~n~~~p~~  250 (322)
T COG0003         238 VDAVIVNKILPDE  250 (322)
T ss_pred             hheeeeecccccc
Confidence            9999999998776

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=100.00  E-value=4.2e-32  Score=234.24  Aligned_cols=192  Identities=49%  Similarity=0.807  Sum_probs=155.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc---
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET---  104 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---  104 (276)
                      ++++++||||+||||+|+|+|..+|+.|+||||||+||++++++.|+.+....+....+..++...++++...+ ++   
T Consensus         1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~   80 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE   80 (254)
T ss_pred             CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999875433444456678888888776554 11   


Q ss_pred             -----cCc---cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886          105 -----GST---EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (276)
Q Consensus       105 -----~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~  176 (276)
                           ...   ............. |++.+...+.++.+.+++.+||+|||||||++++++++.+|..+.+         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~---------  150 (254)
T cd00550          81 VLEPIEANLLLEMLKGILEEELES-PGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSW---------  150 (254)
T ss_pred             HHHHHHhhccchhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHH---------
Confidence                 111   1111222223333 8999998899998888766899999999999999999999876532         


Q ss_pred             HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH  256 (276)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~  256 (276)
                                                            +.+.+.|+..+++++|++|+.+++.++.++++.|+++|+++.
T Consensus       151 --------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~  192 (254)
T cd00550         151 --------------------------------------AREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD  192 (254)
T ss_pred             --------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence                                                  333456888899999999999999999999999999999999


Q ss_pred             eEEEccccCCCC
Q 023886          257 NIIINQVLYDDE  268 (276)
Q Consensus       257 g~vvN~~~~~~~  268 (276)
                      |+|+|++.++..
T Consensus       193 gvV~N~v~~~~~  204 (254)
T cd00550         193 AVIVNQLLPEDV  204 (254)
T ss_pred             EEEEecCccccc
Confidence            999999987664

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=99.97  E-value=1.9e-28  Score=214.63  Aligned_cols=218  Identities=44%  Similarity=0.646  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc-----------cCccCcc
Q 023886           44 CSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-----------GSTEGMD  111 (276)
Q Consensus        44 ~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-----------~~~~~~~  111 (276)
                      +|+++|..+|+.|+|||+||+||+++++..||.+.+..++.+.+.++++..++++.... ++           ....+..
T Consensus         1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (284)
T TIGR00345         1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEEYRAKLVEQIKGNLPDGDML   80 (284)
T ss_pred             CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHHHHHHHHHHHhhhccccccH
Confidence            47899999999999999999999999999999887777776666789999999887665 11           0111111


Q ss_pred             hHHHHHhccCCCchHHHHHHHHHHHhcc--CCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886          112 SLFSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL  189 (276)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~  189 (276)
                      ....+.....||+++...|.++.+.+..  ++||+||+||||++++++++.+|..+.+|++++.+...++.++..++   
T Consensus        81 ~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~~~~~~---  157 (284)
T TIGR00345        81 GDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMLKLF---  157 (284)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            1112223456999999999998888754  58999999999999999999999999999999999988877665543   


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886          190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                      .|.   .+.+.+++.+...++.++++++.+.|+..+++++|++|+.+++.++.++++.+++.++++.++|+|++.+..
T Consensus       158 ~~~---~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~  232 (284)
T TIGR00345       158 MGA---GESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN  232 (284)
T ss_pred             cCC---CcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCC
Confidence            332   133567788999999999999999999999999999999999999999999999999999999999998754

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.94  E-value=4e-25  Score=191.33  Aligned_cols=190  Identities=18%  Similarity=0.174  Sum_probs=128.2

Q ss_pred             hhhhccccccchhhhhcC---CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCC-Cc
Q 023886            8 QDQELEIPEGSVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK-TP   82 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~~~---~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~-~~   82 (276)
                      ..+.++..+.+++.....   ....|+++|+|||+||||+|+|||.++|+.|+||++||+|. .+++...|+.+... ..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~  114 (265)
T COG0489          35 ASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLT  114 (265)
T ss_pred             hhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcc
Confidence            455566666643333322   45677799999999999999999999999999999999997 56788999885422 11


Q ss_pred             ceeccCCCceeeecCCcccccccCccCcchHHHH-HhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886           83 TLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSE-LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus        83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                      ....+.. +...  .....+     ..++..+.. ....+.+......+.++++.+.++.||||||||||..+......+
T Consensus       115 ~~~~g~~-~~~~--~~~~~~-----~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~  186 (265)
T COG0489         115 ELLAGEA-LEPV--IQHDGI-----KVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVL  186 (265)
T ss_pred             cccCCCc-cccc--eecCcc-----ceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHH
Confidence            1111100 1100  000000     001111000 111233445566899999999985599999999998443321111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHH
Q 023886          162 PSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET  241 (276)
Q Consensus       162 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea  241 (276)
                                                                                 ....+++++|++|+.+...++
T Consensus       187 -----------------------------------------------------------~~~~~g~viVt~p~~~~~~~v  207 (265)
T COG0489         187 -----------------------------------------------------------QRIPDGVVIVTTPGKTALEDV  207 (265)
T ss_pred             -----------------------------------------------------------hccCCeEEEEeCCccchHHHH
Confidence                                                                       112247999999999999999


Q ss_pred             HHHHHHHhhCCCCcCeEEEcccc
Q 023886          242 ERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       242 ~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      +++.+.+++.+.++.|+|.|+..
T Consensus       208 ~ka~~~~~~~~~~vlGvv~Nm~~  230 (265)
T COG0489         208 KKAIDMLEKAGIPVLGVVENMSY  230 (265)
T ss_pred             HHHHHHHHhcCCceEEEEecCcc
Confidence            99999999999999999999884

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.8e-26  Score=190.82  Aligned_cols=183  Identities=19%  Similarity=0.193  Sum_probs=126.9

Q ss_pred             hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCccc
Q 023886           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE  101 (276)
Q Consensus        23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  101 (276)
                      +.+-+.+|++.||||||||||+|+|||.+||+.|++|.++|+|. .+++..++|.+...   ..+.-.++........-.
T Consensus        43 l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~---~~~~~~g~~Pv~~~~~l~  119 (300)
T KOG3022|consen   43 LSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV---VHQSDNGWIPVVVNKNLK  119 (300)
T ss_pred             ccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce---eeecCCCceeeeecCCeE
Confidence            33445788899999999999999999999999999999999997 57788888876432   111111221111111000


Q ss_pred             ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      .   -+.++..-+.+-...+.|......+++++....+++.||+||||||+.+.-- +++                    
T Consensus       120 ~---mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDeh-ls~--------------------  175 (300)
T KOG3022|consen  120 L---MSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEH-LSL--------------------  175 (300)
T ss_pred             E---EEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhh-hhe--------------------
Confidence            0   0011111111122345566667788999999999899999999999844211 000                    


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                              .                          +.  .+..++.++||||...++.++++.+.++++.++++.|+|.|
T Consensus       176 --------~--------------------------~~--~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVEN  219 (300)
T KOG3022|consen  176 --------V--------------------------QF--LRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVEN  219 (300)
T ss_pred             --------e--------------------------ec--ccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEec
Confidence                    0                          00  11126789999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCC
Q 023886          262 QVLYDDEGMHCN  273 (276)
Q Consensus       262 ~~~~~~~~~~~~  273 (276)
                      |+     ...|+
T Consensus       220 Ms-----~f~Cp  226 (300)
T KOG3022|consen  220 MS-----GFVCP  226 (300)
T ss_pred             cc-----cccCC
Confidence            99     55565

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.93  E-value=4.4e-26  Score=199.16  Aligned_cols=186  Identities=16%  Similarity=0.161  Sum_probs=126.1

Q ss_pred             chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcce
Q 023886            7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTL   84 (276)
Q Consensus         7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~   84 (276)
                      +.+|+|+.+++++..... +..+.|+|+|+|||+||||+|.|||.++|+.|+|||+||+|++. +++..|+.+..  +.+
T Consensus        82 ~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~--~gl  159 (274)
T TIGR03029        82 PQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQ--RGL  159 (274)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCC--CCH
Confidence            467999999999987654 45566679999999999999999999999999999999999864 45667765432  222


Q ss_pred             eccCCC---ceeee-cCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886           85 VNGFSN---LYAME-VDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (276)
Q Consensus        85 ~~~~~~---l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~  159 (276)
                      .+.+.+   ..... ......+++ +.+...... ..+.       ....+.++++.+++ .||||||||||........
T Consensus       160 ~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~-~~~~-------~~~~~~~~l~~l~~-~yD~ViiD~pp~~~~~d~~  230 (274)
T TIGR03029       160 SDILAGRSDLEVITHIPALENLSVLPAGAIPPNP-QELL-------ARPAFTDLLNKVMG-DYDVVIVDTPSAEHSSDAQ  230 (274)
T ss_pred             HHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCH-HHHh-------CcHHHHHHHHHHHh-cCCEEEEeCCCcccccHHH
Confidence            111111   00000 000011111 222111111 1111       11357888999986 9999999999973321111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (276)
Q Consensus       160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~  239 (276)
                      .+                                                           -...+.+++|+.++.++..
T Consensus       231 ~~-----------------------------------------------------------~~~~d~vilV~~~~~t~~~  251 (274)
T TIGR03029       231 IV-----------------------------------------------------------ATRARGTLIVSRVNETRLH  251 (274)
T ss_pred             HH-----------------------------------------------------------HHhCCeEEEEEECCCCCHH
Confidence            11                                                           0123679999999999999


Q ss_pred             HHHHHHHHHhhCCCCcCeEEEcc
Q 023886          240 ETERLVQELTKFEIDTHNIIINQ  262 (276)
Q Consensus       240 ea~~~~~~l~~~~~~~~g~vvN~  262 (276)
                      ++.++.+.+++.|.++.|+|+|+
T Consensus       252 ~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       252 ELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             HHHHHHHHHHhCCCCEEEEEeCC
Confidence            99999999999999999999996

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>PRK11670 antiporter inner membrane protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=200.61  Aligned_cols=173  Identities=20%  Similarity=0.207  Sum_probs=109.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh-HHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS-DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  104 (276)
                      -.+.|+|+|+||||||||+|+|||.+||+.|+||+|||+|+|++.. .+||..... +...   .+......... ... 
T Consensus       106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~-~~~~---~~~~i~p~~~~-g~~-  179 (369)
T PRK11670        106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQR-PTSP---DGTHMAPIMAH-GLA-  179 (369)
T ss_pred             CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccC-Cccc---CCceeeeeecc-Ccc-
Confidence            3366779999999999999999999999999999999999997754 678764321 1100   11100000000 000 


Q ss_pred             cCccCcchHHHHHhccCCCchHHHHHHHHHH-HhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLK-LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                      ....++.. ...-...+.+......+.+++. .+.+ +||||||||||+.+...+...                      
T Consensus       180 ~~~~~~l~-~~~~~~i~~g~~~~~~l~~~l~~~~~~-~yDyvIID~PPg~gd~~l~~~----------------------  235 (369)
T PRK11670        180 TNSIGYLV-TDDNAMVWRGPMASKALMQMLQETLWP-DLDYLVLDMPPGTGDIQLTLA----------------------  235 (369)
T ss_pred             cccHHHhc-CcCcceeecCcchHHHHHHHHHHHhhc-cCCEEEEeCCCCCchHHHHHh----------------------
Confidence            00000000 0000001112122335666664 4554 899999999998553211000                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                          .                                -...+.+++|++|+..++.++.+.++.+++.++++.|+|+||+
T Consensus       236 ----~--------------------------------l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~  279 (369)
T PRK11670        236 ----Q--------------------------------NIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS  279 (369)
T ss_pred             ----h--------------------------------hccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCC
Confidence                0                                0013678999999999999999999999999999999999998


Q ss_pred             c
Q 023886          264 L  264 (276)
Q Consensus       264 ~  264 (276)
                      .
T Consensus       280 ~  280 (369)
T PRK11670        280 M  280 (369)
T ss_pred             c
Confidence            4

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.93  E-value=6.2e-25  Score=178.49  Aligned_cols=133  Identities=20%  Similarity=0.253  Sum_probs=101.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG  109 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (276)
                      |+|+|+||||||||+|+|||.++|+.|+||+|||+|+|++....+.             ..                   
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~-------------~~-------------------   49 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW-------------RG-------------------   49 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH-------------hC-------------------
Confidence            6799999999999999999999999999999999999986332220             00                   


Q ss_pred             cchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886          110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL  189 (276)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~  189 (276)
                                  +  .....++.+++.+...+||||||||||+.+.......                            
T Consensus        50 ------------~--~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~----------------------------   87 (169)
T cd02037          50 ------------P--MKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLA----------------------------   87 (169)
T ss_pred             ------------c--chHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHH----------------------------
Confidence                        0  0012345566655434899999999998442211100                            


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                                                    .....+.+++|++|+..++.++.++++.+++.+.++.|+|+||+.+.
T Consensus        88 ------------------------------~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~  134 (169)
T cd02037          88 ------------------------------QSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV  134 (169)
T ss_pred             ------------------------------hccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence                                          00134679999999999999999999999999999999999999753

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.92  E-value=1.5e-24  Score=198.60  Aligned_cols=133  Identities=22%  Similarity=0.129  Sum_probs=86.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC----CcceeccCC------Cceee-ec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK----TPTLVNGFS------NLYAM-EV   96 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~----~~~~~~~~~------~l~~~-~~   96 (276)
                      ..|+|+|.||||||||+|+|||..||..|+|||+||+|||++++.+||.....    ..++.+.+.      .+... ..
T Consensus       122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i~~  201 (405)
T PRK13869        122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRP  201 (405)
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHheec
Confidence            56679999999999999999999999999999999999999999999875432    112211110      00000 00


Q ss_pred             CCcccccc-cCccCcchHHHHHh----cc-CCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886           97 DPSVEEET-GSTEGMDSLFSELA----NA-IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus        97 ~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                      .....+++ |++..+..++..+.    .. .........|++.++.+.+ +||||||||||+++.++.+++
T Consensus       202 t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~-~yD~IiIDtpP~l~~~t~~al  271 (405)
T PRK13869        202 TYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVAD-DYDVVVIDCPPQLGFLTLSGL  271 (405)
T ss_pred             cCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhhc-cCCEEEEECCCchhHHHHHHH
Confidence            00011222 44444433332221    00 1111122467888998886 899999999999998887775

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.92  E-value=8.7e-25  Score=182.91  Aligned_cols=192  Identities=16%  Similarity=0.170  Sum_probs=122.7

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh-hHHhccccCCCcceeccC
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL-SDAFQQRFTKTPTLVNGF   88 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l-~~~l~~~~~~~~~~~~~~   88 (276)
                      |.|+.+|.++.....+ ++.|+|+|+|||+||||+|+|||.++|+.|+|||+||+|++.+. +..++.... ..+..+.+
T Consensus         1 ~~~~~l~~~l~~~~~~-~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~-~~~l~~~l   78 (204)
T TIGR01007         1 EYYNAIRTNIQFSGAE-IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNK-ITGLTNFL   78 (204)
T ss_pred             ChHHHHHHHHhhhcCC-CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCC-CCCHHHHh
Confidence            5688899998855533 67777999999999999999999999999999999999998654 445554321 11111111


Q ss_pred             CCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHH
Q 023886           89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK  167 (276)
Q Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~  167 (276)
                      .+    .......+......++..++.......+ .......+.++++.+++ +||||||||||.........       
T Consensus        79 ~~----~~~l~~~i~~~~~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~~-~yD~ViiD~pp~~~~~~~~~-------  146 (204)
T TIGR01007        79 SG----TTDLSDAICDTNIENLFVITSGPVPPNPTELLQSSNFKTLIETLRK-YFDYIIIDTPPIGTVTDAAI-------  146 (204)
T ss_pred             cC----CCCHHHhcccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHHH-------
Confidence            00    0000000000000111111100000000 00112357888898986 99999999999421100000       


Q ss_pred             HHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHH
Q 023886          168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE  247 (276)
Q Consensus       168 ~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~  247 (276)
                                                                         + -...+.+++|+.|+..+..++.+..+.
T Consensus       147 ---------------------------------------------------~-~~~~D~vilV~~~~~~~~~~~~~~~~~  174 (204)
T TIGR01007       147 ---------------------------------------------------I-ARACDASILVTDAGEIKKRDVQKAKEQ  174 (204)
T ss_pred             ---------------------------------------------------H-HHhCCeEEEEEECCCCCHHHHHHHHHH
Confidence                                                               0 012367999999999999999999999


Q ss_pred             HhhCCCCcCeEEEccccCCC
Q 023886          248 LTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       248 l~~~~~~~~g~vvN~~~~~~  267 (276)
                      +++.+.++.|+|+|++....
T Consensus       175 l~~~~~~~~gvVlN~~~~~~  194 (204)
T TIGR01007       175 LEQTGSNFLGVVLNKVDISV  194 (204)
T ss_pred             HHhCCCCEEEEEEeCccccc
Confidence            99999999999999987654

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>CHL00175 minD septum-site determining protein; Validated

Probab=99.92  E-value=1.1e-24  Score=191.14  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=113.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCC---ceeeecCCc--cc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPS--VE  101 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~--~~  101 (276)
                      +.|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++..||........+.+.+.+   +....+...  ..
T Consensus        16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~~   95 (281)
T CHL00175         16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWKN   95 (281)
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCCC
Confidence            5667999999999999999999999999999999999997 88998888763222121111111   100000000  01


Q ss_pred             ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 023886          102 EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (276)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~  180 (276)
                      +++ +.......       ..   .....+.++++.+++.+||||||||||+++.....++                   
T Consensus        96 l~~l~~~~~~~~-------~~---~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~l-------------------  146 (281)
T CHL00175         96 LSLLAISKNRQR-------YN---VTRKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINAI-------------------  146 (281)
T ss_pred             eEEEeCCCchhh-------cc---CCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH-------------------
Confidence            111 11111000       00   0122477888888643799999999998654432222                   


Q ss_pred             hhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEE
Q 023886          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII  260 (276)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vv  260 (276)
                                                              . ..+.+++|++|+..+++.+.++.+.+++.+....++|+
T Consensus       147 ----------------------------------------~-~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvv  185 (281)
T CHL00175        147 ----------------------------------------A-PAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLV  185 (281)
T ss_pred             ----------------------------------------H-hcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEE
Confidence                                                    0 12568999999999999999999999998888789999


Q ss_pred             ccccCC
Q 023886          261 NQVLYD  266 (276)
Q Consensus       261 N~~~~~  266 (276)
                      |++.+.
T Consensus       186 N~~~~~  191 (281)
T CHL00175        186 NRVRPD  191 (281)
T ss_pred             eccChh
Confidence            999654

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.92  E-value=2.2e-24  Score=182.15  Aligned_cols=177  Identities=45%  Similarity=0.653  Sum_probs=121.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC--------hhHHhccccCCCcceeccCCCceeeecCCccc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--------LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE  101 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~--------l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  101 (276)
                      +++++||||+||||+++++|..+|+.|+||++||+|++.+        ++..++.......      .+....+......
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~------~~~~~~~~~~~~~   74 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIA------PNLYREEVDATRR   74 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHH------HHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999884        3334332100000      0000000000000


Q ss_pred             ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      . ..................|+..+...+.++++.+++.+||||||||||+.+.++.+.+                    
T Consensus        75 ~-~~~~~~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~--------------------  133 (217)
T cd02035          75 V-ERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVR--------------------  133 (217)
T ss_pred             h-hhcccchhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHH--------------------
Confidence            0 0000000111122334567888888899999999873499999999998655543321                    


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                                                         +.+.++..+.+++|+.|+..+++++.++++.+++.++++.|+|+|
T Consensus       134 -----------------------------------~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN  178 (217)
T cd02035         134 -----------------------------------ELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVN  178 (217)
T ss_pred             -----------------------------------HHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEe
Confidence                                               122355568899999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 023886          262 QVLYDDE  268 (276)
Q Consensus       262 ~~~~~~~  268 (276)
                      ++.++..
T Consensus       179 ~~~~~~~  185 (217)
T cd02035         179 RVLPAEV  185 (217)
T ss_pred             CCcCccc
Confidence            9987654

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.92  E-value=6.6e-25  Score=199.37  Aligned_cols=209  Identities=16%  Similarity=0.125  Sum_probs=121.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec-CCCCChhHHhccccCCC----cceeccCCC---ceeeecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQRFTKT----PTLVNGFSN---LYAMEVDP   98 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~-D~~~~l~~~l~~~~~~~----~~~~~~~~~---l~~~~~~~   98 (276)
                      ...|+|+|.||||||||+|+|||..||.+|+|||+||+ |||++++.+||..+...    .+..+.+.+   .....+.+
T Consensus       106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i~~  185 (387)
T PHA02519        106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIKP  185 (387)
T ss_pred             ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhheec
Confidence            35666999999999999999999999999999999996 99999999998754211    111110000   00000001


Q ss_pred             --cccccc-cCccCcchHHHHHhccCC-C---chHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------HH
Q 023886           99 --SVEEET-GSTEGMDSLFSELANAIP-G---IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------PS  163 (276)
Q Consensus        99 --~~~~~~-~~~~~~~~~~~~~~~~~~-~---~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p~  163 (276)
                        ...+++ |++..+..++..+..... +   ......|++.++.+.. +||||||||||+++.++.+++        |.
T Consensus       186 t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~~-~YD~IlID~pPslg~lt~nAL~AAd~vliPv  264 (387)
T PHA02519        186 TCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWD-NYDIIVIDSAPNLGTGTINVVCAADVIVVAT  264 (387)
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhhc-cCCEEEEECCCCccHHHHHHHHHhCEEEEec
Confidence              111233 554444444433322110 0   1123567888898886 899999999999999998775        44


Q ss_pred             HHH----HHHHHHHHHHHHHhhhH-----hhhhhhcCCCCCcchHHHH-HH-HHHHHHHHHHHHHhhcCCCCeEEEEEec
Q 023886          164 TLE----KGLDKMMSLKNKFGGMI-----NQMTRLFGIDDEFGEDALL-GR-LEGMKDVIERVNKQFKDPDLTTFVCVCI  232 (276)
Q Consensus       164 ~~~----~~l~~l~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~V~~  232 (276)
                      ..+    .++.++++....+...+     ++..+++     +   +++ .+ ....+++.+.+++.|++..+.+.    +
T Consensus       265 ~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il-----~---t~~~~~~~~~~~~i~~~l~~~~g~~vl~~~----I  332 (387)
T PHA02519        265 PAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLL-----L---TKYSLTVGNQSRWMEEQIRNTWGSMVLRQV----V  332 (387)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEE-----E---eeECCCCchHHHHHHHHHHHHhcccccccc----C
Confidence            443    23333333333322111     1111111     1   233 22 23445577889999998765544    3


Q ss_pred             CCcccHHHHHHHHHHH
Q 023886          233 PEFLSLYETERLVQEL  248 (276)
Q Consensus       233 p~~~~~~ea~~~~~~l  248 (276)
                      +....+.+|....+.+
T Consensus       333 ~~s~~i~~a~~~~~ti  348 (387)
T PHA02519        333 RVTDEVGKGQIKMRTV  348 (387)
T ss_pred             cCcchHhhchhcCCCh
Confidence            4445555554443333

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=99.92  E-value=8.2e-25  Score=178.07  Aligned_cols=174  Identities=20%  Similarity=0.193  Sum_probs=116.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG  105 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  105 (276)
                      ..|+++||||||||||+++|++.+||+.|+||++||+|.. .|+...+|.+....+..++.++    .++..+... .-.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~----g~~~l~QALIkDK   78 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIE----GEATLNQALIKDK   78 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhc----CccchhhHhhccc
Confidence            4567999999999999999999999999999999999985 7899999987654333333222    122222221 001


Q ss_pred             CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886          106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ  185 (276)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~  185 (276)
                      ....+..++..-.... ......-+.+++++++..+|||||+|||+++..-..+++                        
T Consensus        79 r~~nL~lLPAsQtrdK-dalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~------------------------  133 (272)
T COG2894          79 RLENLFLLPASQTRDK-DALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAV------------------------  133 (272)
T ss_pred             cCCceEecccccccCc-ccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhh------------------------
Confidence            1111211221111100 011223567888888855899999999998543322222                        


Q ss_pred             hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC----CCc---CeE
Q 023886          186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE----IDT---HNI  258 (276)
Q Consensus       186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~----~~~---~g~  258 (276)
                                                          ...+..++||+||..+++++.|.+.-|+..+    ..-   ..+
T Consensus       134 ------------------------------------~~Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~~l  177 (272)
T COG2894         134 ------------------------------------YFADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHL  177 (272)
T ss_pred             ------------------------------------hccceEEEEcCCCccccccchhheeehhcccchhhcCCcccceE
Confidence                                                0135689999999999999999999998765    322   589


Q ss_pred             EEccccCC
Q 023886          259 IINQVLYD  266 (276)
Q Consensus       259 vvN~~~~~  266 (276)
                      ++||+.|+
T Consensus       178 lvnR~~p~  185 (272)
T COG2894         178 LLNRYRPE  185 (272)
T ss_pred             EEEccCHH
Confidence            99998764

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.92  E-value=2.3e-24  Score=180.78  Aligned_cols=188  Identities=14%  Similarity=0.117  Sum_probs=120.9

Q ss_pred             chhhhccccccchhhhh----cC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC-ChhHHhccccC
Q 023886            7 DQDQELEIPEGSVRNIL----EQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH-NLSDAFQQRFT   79 (276)
Q Consensus         7 ~~~~~~~~~~~~l~~~~----~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~-~l~~~l~~~~~   79 (276)
                      ..+++|+.||..+....    .+ ..+.|+|+|+|||+||||+|+|||.+||+ .|+||||||+|++. +++..++.+..
T Consensus        10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~   89 (207)
T TIGR03018        10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAE   89 (207)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCC
Confidence            46788999999887654    33 34556699999999999999999999997 69999999999985 67777776533


Q ss_pred             CCcceeccCCCceeeecCCcccccccCccCcchHHHHHhccCCC-chHHHHHHHHHHHhccCCC--cEEEEcCCCchhHH
Q 023886           80 KTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPG-IDEAMSFAEMLKLVQTMDY--SCIVFDTAPTGHTL  156 (276)
Q Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~y--D~IiiD~pp~~~~l  156 (276)
                      .  .+.+.+.+-   ..+....+.-....++..++.......+. ......+.++++.+++ +|  |||||||||..+..
T Consensus        90 ~--~l~~~l~~~---~~~l~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~~~~  163 (207)
T TIGR03018        90 P--GLSDCLLDP---VLDLADVLVPTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLLVFS  163 (207)
T ss_pred             C--CHHHHHcCC---CCCHHHHhccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCcchh
Confidence            1  111111000   00000000000001111111100000000 0112467889999986 78  99999999985422


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcc
Q 023886          157 RLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL  236 (276)
Q Consensus       157 ~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~  236 (276)
                      ....+.                                                           ...+.+++|+.|+..
T Consensus       164 ~~~~l~-----------------------------------------------------------~~aD~viiV~~~~~~  184 (207)
T TIGR03018       164 EARALA-----------------------------------------------------------RLVGQIVLVVEEGRT  184 (207)
T ss_pred             HHHHHH-----------------------------------------------------------HhCCEEEEEEECCCC
Confidence            111110                                                           013679999999999


Q ss_pred             cHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          237 SLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       237 ~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                      +...+.+.++.++  +.++.|+|+|
T Consensus       185 ~~~~~~~~~~~l~--~~~~~G~v~N  207 (207)
T TIGR03018       185 TQEAVKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             CHHHHHHHHHHhc--CCCeEEEEeC
Confidence            9999999999998  7889999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=99.91  E-value=1.5e-24  Score=186.79  Aligned_cols=167  Identities=19%  Similarity=0.227  Sum_probs=111.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCC---ceeeecCCcccccc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPSVEEET  104 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~  104 (276)
                      .|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++.++|.+... .+..+.+.+   +..........+++
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKP-VTLHDVLAGEADIKDAIYEGPFGVKV   80 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCC-CCHHHHhcCCCCHHHheEeCCCCEEE
Confidence            567999999999999999999999999999999999996 6888888765321 111111110   00000000001111


Q ss_pred             -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                       +....+....    .     .....+.+.++.+.+ +||||||||||+.+.....++                      
T Consensus        81 lp~~~~~~~~~----~-----~~~~~l~~~l~~l~~-~yD~VIiD~p~~~~~~~~~~l----------------------  128 (251)
T TIGR01969        81 IPAGVSLEGLR----K-----ADPDKLEDVLKEIID-DTDFLLIDAPAGLERDAVTAL----------------------  128 (251)
T ss_pred             EeCCCCHHHHh----h-----cCHHHHHHHHHHHHh-hCCEEEEeCCCccCHHHHHHH----------------------
Confidence             2111111110    0     112357788888876 899999999998664433322                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                                                          .  ..+.+++|+.|+..++.++.+..+.++..+.++.++|+|++
T Consensus       129 ------------------------------------~--~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~  170 (251)
T TIGR01969       129 ------------------------------------A--AADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRV  170 (251)
T ss_pred             ------------------------------------H--hCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECC
Confidence                                                0  12558999999999999998888888888998899999998


Q ss_pred             cCC
Q 023886          264 LYD  266 (276)
Q Consensus       264 ~~~  266 (276)
                      .+.
T Consensus       171 ~~~  173 (251)
T TIGR01969       171 TRD  173 (251)
T ss_pred             Cch
Confidence            653

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.91  E-value=3.9e-24  Score=194.62  Aligned_cols=214  Identities=17%  Similarity=0.099  Sum_probs=120.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec-CCCCChhHHhccccCC----CcceeccCC-C---ce-eee
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQRFTK----TPTLVNGFS-N---LY-AME   95 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~-D~~~~l~~~l~~~~~~----~~~~~~~~~-~---l~-~~~   95 (276)
                      +...|+|+|.||||||||+|+|||.+||..|+|||+||+ |||++++.+||..+..    ..++.+.+. +   +. ...
T Consensus       105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  184 (388)
T PRK13705        105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAIK  184 (388)
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhee
Confidence            345667999999999999999999999999999999996 9999999998865321    111111000 0   00 000


Q ss_pred             cCCcccccc-cCccCcchHHHHHhccCC----CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------H
Q 023886           96 VDPSVEEET-GSTEGMDSLFSELANAIP----GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------P  162 (276)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p  162 (276)
                      ......+++ |++..+..++..+.....    .......|++.++.++. +||||||||||+++.++.+++        |
T Consensus       185 ~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~~-~YD~IiIDtpP~l~~~t~nal~AaD~viiP  263 (388)
T PRK13705        185 PTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAH-DYDVIVIDSAPNLGIGTINVVCAADVLIVP  263 (388)
T ss_pred             cCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhhc-cCCEEEEECCCchhHHHHHHHHHcCEEEEe
Confidence            000112233 444444444333322110    01123467888888886 899999999999999988775        5


Q ss_pred             HHHH----HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcc-hHHHH-HHH-HHHHHHHHHHHHhhcCCCCeEEEEEecCCc
Q 023886          163 STLE----KGLDKMMSLKNKFGGMINQMTRLFGIDDEFG-EDALL-GRL-EGMKDVIERVNKQFKDPDLTTFVCVCIPEF  235 (276)
Q Consensus       163 ~~~~----~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~  235 (276)
                      ...+    .++.++++....+....+..    |....+. .-+.+ .+. ...+...+.+++.|++..+.+    .++..
T Consensus       264 ~~~~~~s~~g~~~~~~~i~~~~~~~~~~----~~~~~l~il~t~~~~~~~~~~~~~~~~l~~~~~~~vl~~----~I~~s  335 (388)
T PRK13705        264 TPAELFDYTSALQFFDMLRDLLKNVDLK----GFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKN----VVRET  335 (388)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCeEEEEEEecCCCchHHHHHHHHHHHHhccccccc----cCccc
Confidence            5444    23444444443333221110    0000000 01222 222 223446678888888765443    34555


Q ss_pred             ccHHHHHHHHHHH
Q 023886          236 LSLYETERLVQEL  248 (276)
Q Consensus       236 ~~~~ea~~~~~~l  248 (276)
                      ..+.++....+.+
T Consensus       336 ~~i~~a~~~~~ti  348 (388)
T PRK13705        336 DEVGKGQIRMRTV  348 (388)
T ss_pred             chHhhhhhcCCCc
Confidence            5555554444433

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.91  E-value=8.6e-24  Score=183.21  Aligned_cols=204  Identities=24%  Similarity=0.289  Sum_probs=117.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCcee----eecC-Ccc
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA----MEVD-PSV  100 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~----~~~~-~~~  100 (276)
                      ++.|+|+|.||||||||+|.|||.+|| ..|+|||+||+|||++++.++|.+..........+.....    .... ...
T Consensus         2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (259)
T COG1192           2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE   81 (259)
T ss_pred             CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcccchhHHHHHhcccccccchhcccCCC
Confidence            356679999999999999999999999 5679999999999999999999875511111111110000    0000 011


Q ss_pred             cccc-cCccCcch-HHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------HHHHH----
Q 023886          101 EEET-GSTEGMDS-LFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------PSTLE----  166 (276)
Q Consensus       101 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p~~~~----  166 (276)
                      .+++ |++..+.. ....+.    .......++.+++.+.. +||||||||||+++.++.+++        |..++    
T Consensus        82 ~ld~ips~~~l~~~~~~~~~----~~~~~~~l~~~~~~~~~-~yD~iiID~pp~l~~l~~nal~asd~vlIP~~~~~~~~  156 (259)
T COG1192          82 GLDLIPSNIDLAEGAEIELN----AVAKELLLKRLLDPVKD-DYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDL  156 (259)
T ss_pred             CceEecCChHHHhHHHHHHh----hhhHHHHHHHHhhhhcc-CCCEEEECCCCchhHHHHHHHHHcCeeEEecCchHHHH
Confidence            1122 33333331 111111    11233456667766665 899999999999999988774        66665    


Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALL-GRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       167 ~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                      .++..+.+....+.+.........++  .   .+++ .+.....+..+.+.+.+.++.+    ...+|....++++...
T Consensus       157 ~~~~~~~~~i~~~~~~~~~~~~~~~i--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~a~~~  226 (259)
T COG1192         157 EGLEQLLNTLEDLLKLRRNKLIVVGI--L---ITRFDSRTKLADEVLQELKQLLGDPVL----KTKIPRRVAYREAAAE  226 (259)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcceEEE--e---eceEcCCcchHHHHHHHHHHHhccccc----cccCcccccHHhHHHc
Confidence            34445444444444321111111111  0   1222 4455666677777777764433    3334566666665443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.90  E-value=5.2e-24  Score=209.89  Aligned_cols=195  Identities=13%  Similarity=0.094  Sum_probs=132.5

Q ss_pred             hhhhccccccchhhhhcCCce-EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886            8 QDQELEIPEGSVRNILEQDSL-KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV   85 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~~~~~~-~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~   85 (276)
                      ..|+|+.+++++..+..+.+. .|.|+|.|||+||||+|+|||.++|+.|+||||||+|++ ++++..|+.....  .+.
T Consensus       526 ~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~--gl~  603 (754)
T TIGR01005       526 AEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVS--GLL  603 (754)
T ss_pred             chHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccC--ChH
Confidence            378999999999888765554 555999999999999999999999999999999999998 6789998865321  111


Q ss_pred             ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      +.+.+    .......+......++..++.......| .......+.++++.+++ +||||||||||..+..+...+   
T Consensus       604 ~~l~~----~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~-~yD~IiID~pp~~~~~d~~~l---  675 (754)
T TIGR01005       604 DLLAG----LRSLLLDLTASGAASLPMLDSGLFPHGITELLASPAMFSLVIHARL-YSDCVVVDVGTADPVRDMRAA---  675 (754)
T ss_pred             HHHcC----CccHHHHhccCCCCCeeEecCCCCCCCHHHHhccHHHHHHHHHHHh-hCCEEEEcCCCcchhHHHHHh---
Confidence            11100    0000000000001111111111000000 00112356788888886 999999999998664443332   


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                                                                              ....+.+++|+.++.++.....+.
T Consensus       676 --------------------------------------------------------~~~~D~vl~v~~~~~~~~~~~~~~  699 (754)
T TIGR01005       676 --------------------------------------------------------ARLAIIMLLVTAYDRVVVECGRAD  699 (754)
T ss_pred             --------------------------------------------------------hhhCCeEEEEEEeCceeHHHHHHH
Confidence                                                                    112366889999999999999999


Q ss_pred             HHHHhhCCCCcCeEEEccccCCCC
Q 023886          245 VQELTKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       245 ~~~l~~~~~~~~g~vvN~~~~~~~  268 (276)
                      ++.++..+.++.|+|+|++.+...
T Consensus       700 ~~~l~~~~~~~~GvvlN~~~~~~~  723 (754)
T TIGR01005       700 AQGISRLNGEVTGVFLNMLDPNDE  723 (754)
T ss_pred             HHHHHhcCCceEEEEecCCChhhh
Confidence            999999999999999999865543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=99.90  E-value=2.5e-23  Score=180.06  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=112.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG  105 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  105 (276)
                      +.|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++..||.+.....+..+...+-    ......+ ...
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~----~~~~~~i~~~~   77 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGE----CRLQQALIKDK   77 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCc----CcHHHHhhcCC
Confidence            4677999999999999999999999999999999999997 788888876532211111111110    0000000 000


Q ss_pred             CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886          106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ  185 (276)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~  185 (276)
                      ...++..++...... ........+.++++.+++ +||||||||||+.+.....++                        
T Consensus        78 ~~~~l~~l~~~~~~~-~~~~~~~~l~~~l~~l~~-~~D~viiD~p~~~~~~~~~~l------------------------  131 (261)
T TIGR01968        78 RLKNLYLLPASQTRD-KDAVTPEQMKKLVNELKE-EFDYVIIDCPAGIESGFRNAV------------------------  131 (261)
T ss_pred             CCCCeEEEeCCCchh-hhhCCHHHHHHHHHHHHH-hCCEEEEeCCCCcCHHHHHHH------------------------
Confidence            001111111100000 000112357788888886 899999999998654322221                        


Q ss_pred             hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                                                          ...+.+++|+.|+..++..+.++++.+++.+....++|+|++.+
T Consensus       132 ------------------------------------~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~  175 (261)
T TIGR01968       132 ------------------------------------APADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP  175 (261)
T ss_pred             ------------------------------------HhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence                                                01256899999999999999999999998887778999999865


Q ss_pred             C
Q 023886          266 D  266 (276)
Q Consensus       266 ~  266 (276)
                      .
T Consensus       176 ~  176 (261)
T TIGR01968       176 E  176 (261)
T ss_pred             h
Confidence            3

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=99.90  E-value=1.6e-23  Score=182.89  Aligned_cols=171  Identities=18%  Similarity=0.219  Sum_probs=102.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh-ccccCCCcceeccCCC-----cee--eecCCc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSN-----LYA--MEVDPS   99 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l-~~~~~~~~~~~~~~~~-----l~~--~~~~~~   99 (276)
                      ++|+|+ |||||||||+|+|||.+||++|+||++||+|||++.+..+ |...  ..++.+.+.+     ...  ......
T Consensus         2 ~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~--~~~~~d~l~~~~~~~~~~~~~i~~~~   78 (273)
T PRK13232          2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN--QKTVLDTLRSEGDEGVDLDVVMQPGF   78 (273)
T ss_pred             CEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCC--CCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence            456688 9999999999999999999999999999999999988876 4321  1222211110     000  000000


Q ss_pred             ccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHH
Q 023886          100 VEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK  178 (276)
Q Consensus       100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~  178 (276)
                      ..+++ ++......    ......+......|.+.++.+.. +|||||||||+... ...+..|..              
T Consensus        79 ~~i~~i~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~-~yD~vlID~~~~~~-~~~~~~~~a--------------  138 (273)
T PRK13232         79 GDIKCVESGGPEPG----VGCAGRGIITSIGLLENLGAYTD-DLDYVFYDVLGDVV-CGGFAMPIR--------------  138 (273)
T ss_pred             CCeEEEeCCCCCCC----CCCCCCchhHHHHHHHHcccccc-cCCEEEEecCCCee-ECCEecccc--------------
Confidence            01111 11110000    00011111111246677777775 89999999987631 000000000              


Q ss_pred             HhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh---CCCCc
Q 023886          179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK---FEIDT  255 (276)
Q Consensus       179 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~---~~~~~  255 (276)
                                                                -...+.+++|++|+..++..+.++.+.++.   .++++
T Consensus       139 ------------------------------------------l~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~  176 (273)
T PRK13232        139 ------------------------------------------EGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARL  176 (273)
T ss_pred             ------------------------------------------ccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCce
Confidence                                                      012367899999999999999888888875   36778


Q ss_pred             CeEEEccc
Q 023886          256 HNIIINQV  263 (276)
Q Consensus       256 ~g~vvN~~  263 (276)
                      .|+|+|+.
T Consensus       177 ~GiV~n~~  184 (273)
T PRK13232        177 GGIICNSR  184 (273)
T ss_pred             eEEEEeCC
Confidence            89999976

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.90  E-value=2.9e-23  Score=174.76  Aligned_cols=173  Identities=21%  Similarity=0.258  Sum_probs=101.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh-ccccCCCcceeccCC--------CceeeecCCc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFS--------NLYAMEVDPS   99 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l-~~~~~~~~~~~~~~~--------~l~~~~~~~~   99 (276)
                      +|+++ |||||||||+|+|||.+||+.|+|||+||+|||++.+..+ +.+.  ..+..+.+.        .+........
T Consensus         2 ~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (212)
T cd02117           2 QIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKA--PTTILELAAEDGHVEDLELEDVIFEGF   78 (212)
T ss_pred             EEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCC--CCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence            35666 6999999999999999999999999999999999887666 3321  111111110        0000000000


Q ss_pred             ccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHH
Q 023886          100 VEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK  178 (276)
Q Consensus       100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~  178 (276)
                      ..+++ +++..+....    ...++......+.+.++.+.+ +||||||||++.+.   ..++                 
T Consensus        79 ~~l~vlp~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~-~yD~ilID~~g~~~---~~~~-----------------  133 (212)
T cd02117          79 GGVKCVESGGPEPGVG----CAGRGVITAVNLLEKEGFAED-DLDVVLYDVLGDVV---CGGF-----------------  133 (212)
T ss_pred             CCcEEEeCCCCCCCcc----cCCcchhhHHHHHHhcccccc-CCCEEEEecCCCce---eccc-----------------
Confidence            11111 2211111110    001111111122225566665 89999999976421   0000                 


Q ss_pred             HhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCC
Q 023886          179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EID  254 (276)
Q Consensus       179 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~  254 (276)
                              ..      .+                       .....+.+++|+.|+..+++.+.++.+.++..    +.+
T Consensus       134 --------~~------~l-----------------------~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~  176 (212)
T cd02117         134 --------AM------PI-----------------------REGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVR  176 (212)
T ss_pred             --------cc------cc-----------------------ccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCc
Confidence                    00      00                       00124678999999999999998888888764    667


Q ss_pred             cCeEEEccccCC
Q 023886          255 THNIIINQVLYD  266 (276)
Q Consensus       255 ~~g~vvN~~~~~  266 (276)
                      +.|+|+||+.+.
T Consensus       177 ~~gvv~N~~~~~  188 (212)
T cd02117         177 LGGLICNSRNTD  188 (212)
T ss_pred             EEEEEEeCCCCc
Confidence            889999999653

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=99.90  E-value=5.7e-23  Score=176.52  Aligned_cols=128  Identities=20%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCC---CceeeecCCcccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS---NLYAMEVDPSVEEET  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~  104 (276)
                      +.|+|+|+||||||||+|+|||.+||++|+|||+||+|+|++++..+|.+........+.+.   .+..........+++
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~   81 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF   81 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence            45679999999999999999999999999999999999999999999865432111111000   000000000011111


Q ss_pred             -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886          105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (276)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~  160 (276)
                       +... ..........  +  .....++++++.++...||||||||||+.+.+...+
T Consensus        82 ip~~~-~~~~~~~~~~--~--~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~  133 (246)
T TIGR03371        82 LPFGD-LSADEREAYQ--A--HDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA  133 (246)
T ss_pred             ecCCC-CcHHHHHHHh--h--cCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH
Confidence             1111 0000000000  0  012346778888875347999999999866554433

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=99.90  E-value=2e-23  Score=179.57  Aligned_cols=168  Identities=26%  Similarity=0.296  Sum_probs=117.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCccc----
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE----  101 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~----  101 (276)
                      +.|+|+||||||||||+|+||+..++ ..|++|++||+|+. +|++..||....... +.+.+.+    +....+.    
T Consensus         3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~-l~dvL~~----~~~~~Di~~~~   77 (262)
T COG0455           3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTT-LHDVLAG----EASIEDIIYET   77 (262)
T ss_pred             EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCccc-HHHHHhC----CCCHhHeeeec
Confidence            56789999999999999999955555 56778899999985 789999998764221 2221111    1111111    


Q ss_pred             ----ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886          102 ----EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (276)
Q Consensus       102 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~  176 (276)
                          +++ ++..+...+    ...     ....+..+++.+.. .|||||+||||+++.-++..+               
T Consensus        78 ~~~gl~vipg~~~~~~~----~~~-----~~~~~~~~~~~l~~-~~D~iliD~~aGl~~~~~~~~---------------  132 (262)
T COG0455          78 PQDGLYVLPGGSGLEDL----AKL-----DPEDLEDVIKELEE-LYDYILIDTGAGLSRDTLSFI---------------  132 (262)
T ss_pred             CcCCEEEeeCCCChHHH----hhc-----CHHHHHHHHHHHHh-cCCEEEEeCCCCccHHHHHHH---------------
Confidence                111 332232222    111     12356788888886 899999999999664433222               


Q ss_pred             HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH  256 (276)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~  256 (276)
                                                                  - ..+.+++|++|+..++.+|....+.+...++...
T Consensus       133 --------------------------------------------~-~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~  167 (262)
T COG0455         133 --------------------------------------------L-SSDELVIVTTPEPTSITDAYKTIKILSKLGLDLL  167 (262)
T ss_pred             --------------------------------------------H-hcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccc
Confidence                                                        0 1267999999999999999999999999999998


Q ss_pred             e--EEEccccCCCCCC
Q 023886          257 N--IIINQVLYDDEGM  270 (276)
Q Consensus       257 g--~vvN~~~~~~~~~  270 (276)
                      +  +|+|++.+..+..
T Consensus       168 ~~~vV~N~v~~~~e~~  183 (262)
T COG0455         168 GRRVVLNRVRSTKEGV  183 (262)
T ss_pred             cceEEEEecccccchh
Confidence            8  9999997655543

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.90  E-value=2.1e-23  Score=190.59  Aligned_cols=134  Identities=24%  Similarity=0.160  Sum_probs=83.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC----CcceeccCC------Cceeeec
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK----TPTLVNGFS------NLYAMEV   96 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~----~~~~~~~~~------~l~~~~~   96 (276)
                      ...|+|+|.||||||||+|+|||.+||+.|+|||+||+|||++++.+||.....    ..++.+.+.      .+...-.
T Consensus       104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  183 (387)
T TIGR03453       104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEIIR  183 (387)
T ss_pred             ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCcccccccCccHHHHHhccccccCHHhhcc
Confidence            356679999999999999999999999999999999999999999999865431    111111100      0000000


Q ss_pred             -CCcccccc-cCccCcchHHHHHh----ccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886           97 -DPSVEEET-GSTEGMDSLFSELA----NAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus        97 -~~~~~~~~-~~~~~~~~~~~~~~----~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                       .....+++ |++..+..+.....    .... .......|.+.++.+.+ +||||||||||+++.++.+++
T Consensus       184 ~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~~al  254 (387)
T TIGR03453       184 KTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVED-DYDVVVIDCPPQLGFLTLSAL  254 (387)
T ss_pred             cCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHh-cCCEEEEeCCccHhHHHHHHH
Confidence             00011122 33333322222111    1000 01112457888888886 899999999999988877665

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PHA02518 ParA-like protein; Provisional

Probab=99.90  E-value=9.6e-23  Score=171.03  Aligned_cols=94  Identities=26%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (276)
                      .|+|+|.||||||||+|+|||.+|+++|+||++||+|||++++.+++......        .          .+  +.  
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~--------~----------~i--~~--   59 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGE--------P----------LI--PV--   59 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCC--------C----------CC--ch--
Confidence            56799999999999999999999999999999999999999998876432100        0          00  00  


Q ss_pred             CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~  160 (276)
                          .           .....+.+.+..+.. .||||||||||+.+.+...+
T Consensus        60 ----~-----------~~~~~~~~~l~~~~~-~~d~viiD~p~~~~~~~~~~   95 (211)
T PHA02518         60 ----V-----------RMGKSIRADLPKVAS-GYDYVVVDGAPQDSELARAA   95 (211)
T ss_pred             ----h-----------hccHHHHHHHHHHhc-cCCEEEEeCCCCccHHHHHH
Confidence                0           000134555666665 89999999999876554433

>PRK11519 tyrosine kinase; Provisional

Probab=99.90  E-value=2.1e-23  Score=203.91  Aligned_cols=193  Identities=16%  Similarity=0.177  Sum_probs=131.7

Q ss_pred             hhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886            8 QDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV   85 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~   85 (276)
                      .+|+|+.+|++|..... .+...|+|+|.+||+||||+|.|||..+|..|+||||||+|++ ++++..|+....  ..+.
T Consensus       506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~--~gl~  583 (719)
T PRK11519        506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLS  583 (719)
T ss_pred             HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCC--CCHH
Confidence            46899999999988654 4445666999999999999999999999999999999999987 557888876532  1111


Q ss_pred             ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      +.+.+    ..+....+.-....++..++.......| ......+|.++++.++. +||||||||||.+...+...+   
T Consensus       584 ~~l~~----~~~l~~~i~~~~~~~l~~lp~g~~~~~~~ell~s~~~~~ll~~l~~-~yD~ViiDtpP~~~v~Da~~l---  655 (719)
T PRK11519        584 DILIG----QGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAAIV---  655 (719)
T ss_pred             HHhCC----CCCHHHhecccCcCCEEEEeCCCCCCCHHHHhhHHHHHHHHHHHHh-cCCEEEEeCCCcccchHHHHH---
Confidence            11110    0010111100001122222211110011 11234578999999986 999999999997442221111   


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                                                                              .+..+.+++|+.++.+...+....
T Consensus       656 --------------------------------------------------------~~~~d~~l~Vvr~~~t~~~~~~~~  679 (719)
T PRK11519        656 --------------------------------------------------------GRHVGTTLMVARYAVNTLKEVETS  679 (719)
T ss_pred             --------------------------------------------------------HHHCCeEEEEEeCCCCCHHHHHHH
Confidence                                                                    112467899999999999999999


Q ss_pred             HHHHhhCCCCcCeEEEccccCC
Q 023886          245 VQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       245 ~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+.+++.++++.|+|+|++...
T Consensus       680 ~~~l~~~~~~~~G~VlN~v~~~  701 (719)
T PRK11519        680 LSRFEQNGIPVKGVILNSIFRR  701 (719)
T ss_pred             HHHHHhCCCCeEEEEEeCCccC
Confidence            9999999999999999999543

>PRK10037 cell division protein; Provisional

Probab=99.89  E-value=1e-22  Score=175.61  Aligned_cols=129  Identities=17%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccC-C--CceeeecCCcccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF-S--NLYAMEVDPSVEEET  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~~  104 (276)
                      +.|+|.|.||||||||+|+|||..||++|+|||+||+|||++++..||..........+.+ .  .+..........+++
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i   81 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL   81 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence            3567999999999999999999999999999999999999999998886532211111100 0  000000001111122


Q ss_pred             -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhc--cCCCcEEEEcCCCchhHHHhhh
Q 023886          105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQ--TMDYSCIVFDTAPTGHTLRLLQ  160 (276)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~yD~IiiD~pp~~~~l~~~~  160 (276)
                       |++ .+..........  .......|.+.++.++  + +||||||||||+.+.+...+
T Consensus        82 ip~~-~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~-~yD~iiIDtpp~~~~~~~~a  136 (250)
T PRK10037         82 LPFG-QLSIEEQENPQH--WQTRLGDICSALQQLKASG-RYQWILLDLPRGASPLTRQL  136 (250)
T ss_pred             EcCC-CCCHHHHHHHHH--HHHhHHHHHHHHHHhcccC-CCCEEEEECCCCccHHHHHH
Confidence             222 121111111000  0011234677888887  5 89999999999987765544

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.89  E-value=1.6e-22  Score=171.82  Aligned_cols=101  Identities=20%  Similarity=0.142  Sum_probs=71.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      +.|+|.|.||||||||+|.|||.+++++|+||++||+|||++++.+++......  .   ++..         . +.   
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~--~---~~~~---------~-~~---   63 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSN--T---WDPA---------C-EV---   63 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhcccc--C---CCcc---------c-ee---
Confidence            466799999999999999999999999999999999999999998886432110  0   0000         0 00   


Q ss_pred             cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~  160 (276)
                                    ........+.+.++.+...+||||||||||+.+.+...+
T Consensus        64 --------------~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a  102 (231)
T PRK13849         64 --------------YAADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI  102 (231)
T ss_pred             --------------cCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH
Confidence                          000112345666666653379999999999887665544

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.89  E-value=3e-23  Score=202.97  Aligned_cols=194  Identities=16%  Similarity=0.145  Sum_probs=129.8

Q ss_pred             hhhhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886            8 QDQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV   85 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~   85 (276)
                      .+|+|+.+|++|...... +.+.|+|+|.+||+||||+|.|||.++|..|+||||||+|++ ++++..|+....  ..+.
T Consensus       511 ~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~--~gl~  588 (726)
T PRK09841        511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLS  588 (726)
T ss_pred             HHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCC--CCHH
Confidence            468999999999886554 445666999999999999999999999999999999999997 567777775432  1111


Q ss_pred             ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      +.+.    ........+.-....++..++.......| .......|.++++.++. +||||||||||.+..-+...+   
T Consensus       589 ~~l~----~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~~-~yD~IIIDtPP~~~~~Da~~l---  660 (726)
T PRK09841        589 EYLA----GKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAAVV---  660 (726)
T ss_pred             HHhC----CCCCHHHheeccCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHHHH---
Confidence            1111    01111111100000111111111000000 01112368889999986 999999999997443211111   


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                                                                              .+..+.+++|+.++.++..++.+.
T Consensus       661 --------------------------------------------------------a~~ad~~llVvr~~~t~~~~~~~~  684 (726)
T PRK09841        661 --------------------------------------------------------GRSVGTSLLVARFGLNTAKEVSLS  684 (726)
T ss_pred             --------------------------------------------------------HHhCCeEEEEEeCCCCCHHHHHHH
Confidence                                                                    112467899999999999999999


Q ss_pred             HHHHhhCCCCcCeEEEccccCCC
Q 023886          245 VQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       245 ~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                      ++.+.+.+.++.|+|+|++.+..
T Consensus       685 ~~~l~~~~~~~~G~VlN~~~~~~  707 (726)
T PRK09841        685 MQRLEQAGVNIKGAILNGVIKRA  707 (726)
T ss_pred             HHHHHhCCCceEEEEEeCcccCc
Confidence            99999999999999999996443

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=99.89  E-value=5.1e-23  Score=179.26  Aligned_cols=47  Identities=38%  Similarity=0.547  Sum_probs=43.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      +|+|. |||||||||+|+|||.+||++|+|||+||+|||++++..|+.
T Consensus         2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~   48 (268)
T TIGR01281         2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTG   48 (268)
T ss_pred             EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecC
Confidence            45666 899999999999999999999999999999999999988863

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=99.89  E-value=4.1e-22  Score=173.72  Aligned_cols=174  Identities=21%  Similarity=0.206  Sum_probs=107.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG  105 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  105 (276)
                      +.|+|+|+||||||||+|+|||..|+++|+||++||+|+| ++++.+||.+........+...+    .......+ ..+
T Consensus         3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~----~~~~~~~~~~~~   78 (270)
T PRK10818          3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQG----DATLNQALIKDK   78 (270)
T ss_pred             eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcC----CCcHHHhccccC
Confidence            4567999999999999999999999999999999999996 78888888754321111111010    00000000 000


Q ss_pred             CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886          106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ  185 (276)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~  185 (276)
                      ...++..++...... ........+.++++.++..+||||||||||+++.....++                        
T Consensus        79 ~~~~~~~lp~~~~~~-~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l------------------------  133 (270)
T PRK10818         79 RTENLYILPASQTRD-KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMAL------------------------  133 (270)
T ss_pred             CcCCEEEecCCCCcc-hhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHH------------------------
Confidence            011111111110000 0001122456777777633799999999999765543332                        


Q ss_pred             hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-------CCCc-Ce
Q 023886          186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-------EIDT-HN  257 (276)
Q Consensus       186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-------~~~~-~g  257 (276)
                                                          ...+.+++|+.|+..+++.+.++++.+...       +.++ .+
T Consensus       134 ------------------------------------~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~  177 (270)
T PRK10818        134 ------------------------------------YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH  177 (270)
T ss_pred             ------------------------------------HhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceE
Confidence                                                013568889999999999999999887632       1122 47


Q ss_pred             EEEccccCC
Q 023886          258 IIINQVLYD  266 (276)
Q Consensus       258 ~vvN~~~~~  266 (276)
                      +|+|++.+.
T Consensus       178 vv~n~~~~~  186 (270)
T PRK10818        178 LLLTRYNPG  186 (270)
T ss_pred             EEEeccCHh
Confidence            899988654

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=99.88  E-value=1.1e-22  Score=177.67  Aligned_cols=47  Identities=30%  Similarity=0.449  Sum_probs=43.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      ++|+|+ +||||||||+|+|||++||++|+|||+||+|||++.+..++
T Consensus         2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~   48 (274)
T PRK13235          2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL   48 (274)
T ss_pred             CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence            356688 89999999999999999999999999999999999888773

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=99.88  E-value=1.2e-22  Score=176.83  Aligned_cols=48  Identities=33%  Similarity=0.514  Sum_probs=43.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      ++|+|+ +||||||||+|+|||.+||++|+||++||+|||++++..++.
T Consensus         2 ~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~   49 (270)
T cd02040           2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG   49 (270)
T ss_pred             cEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence            356677 799999999999999999999999999999999998877753

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=99.88  E-value=1.5e-22  Score=176.30  Aligned_cols=47  Identities=40%  Similarity=0.539  Sum_probs=42.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      +|+|. |||||||||+|+|||++||++|+|||+||+|||++++..++.
T Consensus         2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~   48 (267)
T cd02032           2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG   48 (267)
T ss_pred             EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence            45666 799999999999999999999999999999999999888864

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=99.88  E-value=1.1e-22  Score=177.75  Aligned_cols=169  Identities=18%  Similarity=0.218  Sum_probs=99.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCChhHH-hccccCCCcceeccCCC-----ceeeecCC--
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSN-----LYAMEVDP--   98 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~l~~~-l~~~~~~~~~~~~~~~~-----l~~~~~~~--   98 (276)
                      +.|+|+ +||||||||+|+|||++||+ .|+|||+||+|||++++.. +|...  ..++.+.+.+     .....+-.  
T Consensus         3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~--~~~l~~~l~~~~~~~~~~~~~~~~~   79 (275)
T PRK13233          3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKP--QTTMMDTLRELGEEKVTPDKVIKTG   79 (275)
T ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCC--CCcHHHHHHHhCCCCCCHHHHeeeC
Confidence            455688 89999999999999999997 5999999999999998876 55432  2222221110     00000000  


Q ss_pred             cccccc-cCccCcchHHHHHhccCCCchHH--HHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886           99 SVEEET-GSTEGMDSLFSELANAIPGIDEA--MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL  175 (276)
Q Consensus        99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~  175 (276)
                      ...+++ |++..+..    .  ..++....  ..+.+.++.+.+ +||||||||++.   ++.+++-.            
T Consensus        80 ~~~l~~ipa~~~~~~----~--~~~~~~~~~~~~l~~~l~~~~~-~yD~iliD~~~~---~~~~al~~------------  137 (275)
T PRK13233         80 FKDIRCVESGGPEPG----V--GCAGRGVITAIDLMEENGAYTD-DLDFVFFDVLGD---VVCGGFAM------------  137 (275)
T ss_pred             CCCcEEEECCCCCCC----C--CCCCcchhHHHHHHHHcCCccC-CCCEEEEecCCc---eeeccccc------------
Confidence            011111 22222211    0  01111111  125566666765 899999999653   22222100            


Q ss_pred             HHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH----hhC
Q 023886          176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL----TKF  251 (276)
Q Consensus       176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l----~~~  251 (276)
                                         .                       +.+...+.+++++.|+..++..+.++++.+    +..
T Consensus       138 -------------------~-----------------------~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~  175 (275)
T PRK13233        138 -------------------P-----------------------IRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQS  175 (275)
T ss_pred             -------------------c-----------------------chhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcC
Confidence                               0                       001124568888888988888888886665    245


Q ss_pred             CCCcCeEEEccc
Q 023886          252 EIDTHNIIINQV  263 (276)
Q Consensus       252 ~~~~~g~vvN~~  263 (276)
                      ++++.|+|+|+.
T Consensus       176 ~l~~~Giv~n~~  187 (275)
T PRK13233        176 GVRLGGIICNSR  187 (275)
T ss_pred             CCceeEEEeeCC
Confidence            777888999864

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=99.88  E-value=4.4e-22  Score=174.84  Aligned_cols=46  Identities=41%  Similarity=0.549  Sum_probs=41.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      +|+| +|||||||||+|+|||++||+.|+|||+||+|||++++..++
T Consensus         2 ~ia~-~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~   47 (290)
T CHL00072          2 KLAV-YGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLT   47 (290)
T ss_pred             eEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccccccc
Confidence            4444 459999999999999999999999999999999999988773

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=99.88  E-value=1e-21  Score=171.26  Aligned_cols=48  Identities=40%  Similarity=0.541  Sum_probs=43.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      +.|+|. +||||||||+|+|||.+||++|+|||+||+|||++++.+++.
T Consensus         3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~   50 (270)
T PRK13185          3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG   50 (270)
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence            344566 799999999999999999999999999999999999988874

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=99.88  E-value=3.2e-22  Score=175.28  Aligned_cols=48  Identities=33%  Similarity=0.565  Sum_probs=43.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      .+|+|+ |||||||||+|+|||.+||++|+||||||+|||+|++..|+.
T Consensus         2 ~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~   49 (279)
T PRK13230          2 RKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG   49 (279)
T ss_pred             cEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence            355666 899999999999999999999999999999999999998864

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.87  E-value=1.8e-21  Score=159.45  Aligned_cols=155  Identities=21%  Similarity=0.274  Sum_probs=99.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      +|+|+|+|||+||||+|+|||.++    +||+|||+|++ ++++.+||.+......... ....  ...+...   .. .
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~---~~-~   69 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV-GGKK--AVIDPEL---CI-S   69 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee-cCCc--eEEchhh---hc-c
Confidence            478999999999999999999999    89999999986 6788888876432211000 0000  0000000   00 0


Q ss_pred             cCcchHHHHHhccCCCchHHHHHHHHHHHh-ccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhh
Q 023886          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~  186 (276)
                      .+..            ......+.+.+..+ ...+||||||||||+.+.....+                          
T Consensus        70 ~~~~------------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--------------------------  111 (179)
T cd03110          70 CGLC------------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--------------------------  111 (179)
T ss_pred             ccch------------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--------------------------
Confidence            0000            00011222222211 12389999999999854321111                          


Q ss_pred             hhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                                                      +  ...+.+++|+.|+..++.++.+.++.+++.+.++ ++|+|++.+.
T Consensus       112 --------------------------------l--~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~  156 (179)
T cd03110         112 --------------------------------L--TGADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLN  156 (179)
T ss_pred             --------------------------------H--HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCC
Confidence                                            0  1236789999999999999999999999999876 8999998654


Q ss_pred             C
Q 023886          267 D  267 (276)
Q Consensus       267 ~  267 (276)
                      .
T Consensus       157 ~  157 (179)
T cd03110         157 D  157 (179)
T ss_pred             c
Confidence            3

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.87  E-value=1.1e-21  Score=160.23  Aligned_cols=126  Identities=26%  Similarity=0.321  Sum_probs=95.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (276)
                      |+|+|+|||+||||+|+|||.+++++|+||++||+|+| ++++..++.+....       .+                  
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------~~------------------   56 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------YT------------------   56 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC-------cc------------------
Confidence            67999999999999999999999999999999999996 67766665432100       00                  


Q ss_pred             CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR  188 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~  188 (276)
                                           +.+.+    . . |||||||||+.+.....++                           
T Consensus        57 ---------------------~~~~~----~-~-d~viiD~p~~~~~~~~~~l---------------------------   82 (179)
T cd02036          57 ---------------------LHDVL----A-G-DYILIDSPAGIERGFITAI---------------------------   82 (179)
T ss_pred             ---------------------hhhcc----c-C-CEEEEECCCCCcHHHHHHH---------------------------
Confidence                                 00000    0 1 9999999998553321111                           


Q ss_pred             hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886          189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                                                       ...+.+++|+.|+..++..+.++.+.+++.+.+..++|+|++.+..
T Consensus        83 ---------------------------------~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  128 (179)
T cd02036          83 ---------------------------------APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM  128 (179)
T ss_pred             ---------------------------------HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence                                             0135589999999999999999999999988888999999986654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.87  E-value=1.1e-21  Score=162.25  Aligned_cols=158  Identities=24%  Similarity=0.225  Sum_probs=107.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc-cCCCcceeccCCCceeeecCCcccccccCcc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR-FTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (276)
                      |+|+|+|||+||||+|++||.+|+++|+||++||+|++.+....+... .......    ......   . .        
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~----~~~~~~---~-~--------   64 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL----ENANAI---L-K--------   64 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS----HGHHCH---H-E--------
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc----eehhhh---h-h--------
Confidence            689999999999999999999999999999999999999888777632 0000000    000000   0 0        


Q ss_pred             CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR  188 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~  188 (276)
                      .+....... . ..+ .....++++++.+.+..||||||||||+.+......+                           
T Consensus        65 ~~~~~~~~~-~-~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l---------------------------  114 (195)
T PF01656_consen   65 NFESQDIYQ-G-EEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNAL---------------------------  114 (195)
T ss_dssp             SCCHHHHHH-H-CHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHH---------------------------
T ss_pred             ccchhhhhh-h-hhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHHH---------------------------
Confidence            000000000 0 001 2345688888887653599999999998654421111                           


Q ss_pred             hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC--CCcCeEEEccccCC
Q 023886          189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--IDTHNIIINQVLYD  266 (276)
Q Consensus       189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~--~~~~g~vvN~~~~~  266 (276)
                                                     .  ..+.+++++.|+..++..+.++.+.++..+  ++..++|+|++.+.
T Consensus       115 -------------------------------~--~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~  161 (195)
T PF01656_consen  115 -------------------------------A--AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG  161 (195)
T ss_dssp             -------------------------------H--TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred             -------------------------------H--hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence                                           1  236689999999999999999999999888  55789999999554

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>TIGR01287 nifH nitrogenase iron protein

Probab=99.86  E-value=1.1e-21  Score=171.47  Aligned_cols=45  Identities=31%  Similarity=0.522  Sum_probs=40.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      |+| +|||||||||+|.|||.+||++|+|||+||+|||++++..++
T Consensus         3 ia~-~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~   47 (275)
T TIGR01287         3 IAI-YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL   47 (275)
T ss_pred             eEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence            445 589999999999999999999999999999999999887764

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=99.86  E-value=1.2e-21  Score=172.76  Aligned_cols=47  Identities=32%  Similarity=0.497  Sum_probs=42.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      ++|+|. +||||||||+|+|||.+|++.|+|||+||+|||++.+..++
T Consensus         5 ~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~   51 (295)
T PRK13234          5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL   51 (295)
T ss_pred             eEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence            455575 99999999999999999999999999999999999887664

>PRK13236 nitrogenase reductase; Reviewed

Probab=99.86  E-value=2.2e-21  Score=171.16  Aligned_cols=49  Identities=29%  Similarity=0.467  Sum_probs=43.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      +++++.++|||||||||+|+|||+.||++|+|||+||+|||++.+..+.
T Consensus         5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~   53 (296)
T PRK13236          5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLML   53 (296)
T ss_pred             CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhc
Confidence            3456655999999999999999999999999999999999998777664

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=99.86  E-value=1.5e-21  Score=174.45  Aligned_cols=172  Identities=13%  Similarity=0.121  Sum_probs=106.4

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhccccCCCcceeccCCCceeeecCCccccc-
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE-  103 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-  103 (276)
                      ..+.|+|+|+||||||||+|+|||.++++.|+||+|||+|+|++ +..+||.+........+....  ....+.....+ 
T Consensus        92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~--~~~~~~~~l~~~  169 (322)
T TIGR03815        92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQA--RGRLPAGALRDA  169 (322)
T ss_pred             CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhc--CCCcCHHHHHHh
Confidence            44677799999999999999999999999999999999999876 556777653211110000000  00000000000 


Q ss_pred             ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                      ++...++..++..... ... .....++++++.+++ +||||||||||..+......+                      
T Consensus       170 ~~~~~~l~vl~~~~~~-~~~-~~~~~l~~~l~~l~~-~~D~VIID~p~~~~~~~~~~L----------------------  224 (322)
T TIGR03815       170 LPRRGGLSVLSWGRAV-GAA-LPPAAVRAVLDAARR-GGDLVVVDLPRRLTPAAETAL----------------------  224 (322)
T ss_pred             CCCcCCeEEEecCCCC-cCC-CCHHHHHHHHHHHHh-cCCEEEEeCCCCCCHHHHHHH----------------------
Confidence            1111122222111100 001 123467889999986 899999999998654422221                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                                                            ...+.+++|+.|+..++..+.++++.+...+.++ ++|+|+.
T Consensus       225 --------------------------------------~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~-~lVv~~~  265 (322)
T TIGR03815       225 --------------------------------------ESADLVLVVVPADVRAVAAAARVCPELGRRNPDL-RLVVRGP  265 (322)
T ss_pred             --------------------------------------HHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCe-EEEEeCC
Confidence                                                  0135688888888888888888888888765433 6777764

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=99.86  E-value=1.8e-21  Score=169.21  Aligned_cols=46  Identities=30%  Similarity=0.481  Sum_probs=41.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      ++|+|+ +||||||||+|+|||.+||+.| |||+||+|||++++..++
T Consensus         3 ~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~   48 (264)
T PRK13231          3 KKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC   48 (264)
T ss_pred             eEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence            456677 7999999999999999999999 999999999999887654

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.85  E-value=8e-21  Score=167.29  Aligned_cols=45  Identities=33%  Similarity=0.529  Sum_probs=41.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l   74 (276)
                      +|+|+ |||||||||+|+|||.+||++|+|||+||+|||.+.+..+
T Consensus         2 vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l   46 (296)
T TIGR02016         2 IIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL   46 (296)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence            45677 9999999999999999999999999999999999877766

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=99.81  E-value=1.9e-19  Score=152.23  Aligned_cols=53  Identities=38%  Similarity=0.423  Sum_probs=49.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK   80 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~   80 (276)
                      ++|+++|.||||||||+|+|||.+|++.|++|++||+|||..+...||.+...
T Consensus         2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~   54 (243)
T PF06564_consen    2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDD   54 (243)
T ss_pred             cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcc
Confidence            56779999999999999999999999999999999999999999999987653

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.81  E-value=3.6e-19  Score=133.38  Aligned_cols=101  Identities=24%  Similarity=0.379  Sum_probs=85.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (276)
                      |+++|+|||+||||++.|||.++++. |++|+++|+|+|.+.                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~--------------------------------------   43 (106)
T cd03111           2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD--------------------------------------   43 (106)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence            57899999999999999999999998 999999999999752                                      


Q ss_pred             CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR  188 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~  188 (276)
                                                        |||||||||+.+..+...+                           
T Consensus        44 ----------------------------------D~IIiDtpp~~~~~~~~~l---------------------------   62 (106)
T cd03111          44 ----------------------------------DYVVVDLGRSLDEVSLAAL---------------------------   62 (106)
T ss_pred             ----------------------------------CEEEEeCCCCcCHHHHHHH---------------------------
Confidence                                              8999999998664432221                           


Q ss_pred             hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCC---cCeEEEcc
Q 023886          189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID---THNIIINQ  262 (276)
Q Consensus       189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~---~~g~vvN~  262 (276)
                                                       ...+.+++|+.|+..++..+.++.+.+++.+.+   ...+|+||
T Consensus        63 ---------------------------------~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          63 ---------------------------------DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             ---------------------------------HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence                                             012568999999999999999999999988765   56789996

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.79  E-value=7.9e-19  Score=155.67  Aligned_cols=51  Identities=31%  Similarity=0.464  Sum_probs=43.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccc
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQR   77 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~   77 (276)
                      ..+++.+.||||+||||+++|||.+||++|+||++||+|+++ ++..+||..
T Consensus        30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~   81 (329)
T cd02033          30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK   81 (329)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence            345554458999999999999999999999999999999976 566777754

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.78  E-value=3.7e-18  Score=141.12  Aligned_cols=172  Identities=23%  Similarity=0.298  Sum_probs=112.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecC------Cccccc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD------PSVEEE  103 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~  103 (276)
                      +.++||||+||||+|+.|+..+.++| ++||+||+||..|++..||.+.+..+  ..+...+......      +.... 
T Consensus         3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~--lg~~~e~~~k~~~a~~~~~~~~~f-   79 (255)
T COG3640           3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKY--LGGKRELLKKRTGAEPGGPPGEMF-   79 (255)
T ss_pred             EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcc--cccHHHHHHHHhccCCCCCccccc-
Confidence            45679999999999999888888775 99999999999999999998864211  0000111000000      00000 


Q ss_pred             ccCccCcchHHHHHhcc-----------C--CCc----hHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHH
Q 023886          104 TGSTEGMDSLFSELANA-----------I--PGI----DEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLE  166 (276)
Q Consensus       104 ~~~~~~~~~~~~~~~~~-----------~--~~~----~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~  166 (276)
                       ..+...+.++.++...           .  .|.    .-...++++++.+...+||+||+||-+++..+          
T Consensus        80 -k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHf----------  148 (255)
T COG3640          80 -KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHF----------  148 (255)
T ss_pred             -ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhh----------
Confidence             0000011111110000           0  000    01236789999988656999999999984322          


Q ss_pred             HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886          167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ  246 (276)
Q Consensus       167 ~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~  246 (276)
                                          .+  |+                            -...+.++.|+-|..-+++.|+++.+
T Consensus       149 --------------------gR--g~----------------------------~~~vD~vivVvDpS~~sl~taeri~~  178 (255)
T COG3640         149 --------------------GR--GT----------------------------IEGVDLVIVVVDPSYKSLRTAERIKE  178 (255)
T ss_pred             --------------------cc--cc----------------------------ccCCCEEEEEeCCcHHHHHHHHHHHH
Confidence                                11  10                            12357899999999999999999999


Q ss_pred             HHhhCCCCcCeEEEccccCC
Q 023886          247 ELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       247 ~l~~~~~~~~g~vvN~~~~~  266 (276)
                      -..+.|+.-.++|+|++...
T Consensus       179 L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         179 LAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             HHHHhCCceEEEEEeeccch
Confidence            99999988889999999765

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.75  E-value=8e-18  Score=132.30  Aligned_cols=110  Identities=28%  Similarity=0.374  Sum_probs=86.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG  109 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (276)
                      |.|+++|||+||||++.++|..++++|++|+++|+|+|.+..                                      
T Consensus         2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~--------------------------------------   43 (139)
T cd02038           2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL--------------------------------------   43 (139)
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------
Confidence            579999999999999999999999999999999999865410                                      


Q ss_pred             cchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886          110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL  189 (276)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~  189 (276)
                                                     .||||||||||+.+......+                            
T Consensus        44 -------------------------------~yd~VIiD~p~~~~~~~~~~l----------------------------   64 (139)
T cd02038          44 -------------------------------DYDYIIIDTGAGISDNVLDFF----------------------------   64 (139)
T ss_pred             -------------------------------CCCEEEEECCCCCCHHHHHHH----------------------------
Confidence                                           099999999997543321111                            


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-CCCcCeEEEccccCCCC
Q 023886          190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVLYDDE  268 (276)
Q Consensus       190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-~~~~~g~vvN~~~~~~~  268 (276)
                                                      ...+.+++|+.|+..+++.+.+.++.+.+. +....++|+|++.++.+
T Consensus        65 --------------------------------~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~  112 (139)
T cd02038          65 --------------------------------LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE  112 (139)
T ss_pred             --------------------------------HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHH
Confidence                                            012568999999999999999998888653 44566899999965543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.75  E-value=9.8e-19  Score=146.50  Aligned_cols=115  Identities=23%  Similarity=0.192  Sum_probs=67.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      .|+|.|+||||||||+|+|+|.+|+++|+||.++|+|. |+++..+++.+....  ...   ++   .+..      +..
T Consensus         2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~--~~~---gi---~Lp~------p~~   67 (261)
T PF09140_consen    2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWA--QRD---GI---ELPV------PSH   67 (261)
T ss_dssp             EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHH--HHH---T---------------EE
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhH--Hhc---Cc---ccCC------ccc
Confidence            46799999999999999999999999999999999997 788899987543210  000   00   0000      000


Q ss_pred             cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ  160 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~  160 (276)
                      ..+.. .... ....+......|.+++..+.. ++||||||||++.+.+.-++
T Consensus        68 ~~L~~-~~~~-v~~~~~~~~~~L~q~l~~l~~-~~DfLVID~PGtd~~lsr~A  117 (261)
T PF09140_consen   68 FFLPP-DQAS-VWEGENVEDKRLEQALADLEG-DLDFLVIDTPGTDDRLSRVA  117 (261)
T ss_dssp             E-SSS-HHHH-TTS-HHHHHHHHHHHHHHHHH-H-SEEEEEE-SSS-HHHHHH
T ss_pred             eeecc-cccc-cccCcchhHHHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHH
Confidence            01111 1111 111122234578888988886 89999999998877665544

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.74  E-value=1.9e-17  Score=123.51  Aligned_cols=38  Identities=42%  Similarity=0.535  Sum_probs=36.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      |.|.|.|||+||||+|.+||..++++|++|+++|+|++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~   39 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ   39 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            57999999999999999999999999999999999999

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.74  E-value=1.3e-16  Score=133.14  Aligned_cols=102  Identities=21%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      +.|.|+|.|||+||||.+..||..|+++|.+|.|||+||+.++..|-.......  ...  ..+.+..            
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~--~~~--~~~~V~~------------   65 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPG--AWP--DRIEVYE------------   65 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccC--CCC--CCeeEEe------------
Confidence            457799999999999999999999999999999999999999998854321110  000  1111100            


Q ss_pred             cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                                      ..+...+.+.++......|||||||+.++.+.+...++
T Consensus        66 ----------------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~ai  103 (231)
T PF07015_consen   66 ----------------ADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAI  103 (231)
T ss_pred             ----------------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHH
Confidence                            01223456666665543699999999998887765553

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.69  E-value=8.4e-17  Score=135.78  Aligned_cols=51  Identities=29%  Similarity=0.427  Sum_probs=44.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhcccc
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRF   78 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~   78 (276)
                      +++|+++|||||+||||+|+|||..|+.. +|++|+|+|- .+|+..+|+.+.
T Consensus         1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~   52 (284)
T COG1149           1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEV   52 (284)
T ss_pred             CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccch
Confidence            47899999999999999999999998876 8999999996 677877777653

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.59  E-value=9.2e-15  Score=123.84  Aligned_cols=171  Identities=24%  Similarity=0.340  Sum_probs=94.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH-hccccCCCcceeccCCCcee-eecCCcccccccCcc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSNLYA-MEVDPSVEEETGSTE  108 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~-l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~  108 (276)
                      +.+.||||.||||+|+||+.+||+.|+||++|-+||.+..+.. ++...  .+++.+.+..-.. .+...+..+ ..+..
T Consensus         3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~--~~Tvld~~~~~~~~e~~~ledvv-~~G~~   79 (273)
T PF00142_consen    3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKA--IPTVLDLLREKGSVEDLELEDVV-KEGFK   79 (273)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHS-EEEGG
T ss_pred             EEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCcc--chhHHHHHhhccccccCCCCcEE-EeccC
Confidence            4556899999999999999999999999999999999888744 44432  2222221100000 000000000 00000


Q ss_pred             CcchHHHHHhccCCCchHH----HHHHHHHHHhc--cCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886          109 GMDSLFSELANAIPGIDEA----MSFAEMLKLVQ--TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~--~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~  182 (276)
                      +..-+  +..+..||.--.    ..-.++++.+.  ..+||||++|.-...- =--++.|..                  
T Consensus        80 gi~Cv--EsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVV-CGGFamPir------------------  138 (273)
T PF00142_consen   80 GILCV--ESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVV-CGGFAMPIR------------------  138 (273)
T ss_dssp             GEEEE--E---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSS-CTTTTHHHH------------------
T ss_pred             Cceee--ccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeE-Eeeeehhhh------------------
Confidence            00000  001112221111    12233444332  1369999999776300 000112211                  


Q ss_pred             HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCCcCeE
Q 023886          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHNI  258 (276)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~~~g~  258 (276)
                                                            +...+.+++||.-|.+++..|.++.+.++.+    +.++.|+
T Consensus       139 --------------------------------------~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~Gi  180 (273)
T PF00142_consen  139 --------------------------------------EGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGI  180 (273)
T ss_dssp             --------------------------------------TTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEE
T ss_pred             --------------------------------------hccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence                                                  2234679999999999999999999999865    4689999


Q ss_pred             EEccc
Q 023886          259 IINQV  263 (276)
Q Consensus       259 vvN~~  263 (276)
                      |.|+-
T Consensus       181 I~N~r  185 (273)
T PF00142_consen  181 ICNSR  185 (273)
T ss_dssp             EEE-S
T ss_pred             EecCC
Confidence            99954

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.5e-14  Score=118.04  Aligned_cols=157  Identities=23%  Similarity=0.382  Sum_probs=99.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc-cc-C----------------CCcceeccCCCce
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ-RF-T----------------KTPTLVNGFSNLY   92 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~-~~-~----------------~~~~~~~~~~~l~   92 (276)
                      +-+-||||.||||++.|+|.+||+.|+||++|-+||.+..+..+-. .. +                .+..++.++.++.
T Consensus         4 iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~Gv~   83 (278)
T COG1348           4 IAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGGVK   83 (278)
T ss_pred             EEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCceE
Confidence            4556999999999999999999999999999999999887766532 21 1                0112222333333


Q ss_pred             eeecC-CcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhcc--CCCcEEEEcCCCchhHHHhhhhHHHHHHHH
Q 023886           93 AMEVD-PSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGL  169 (276)
Q Consensus        93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l  169 (276)
                      +.+.. |.+.      .+..         ..+....   -++|+.+..  ...||||+|....                 
T Consensus        84 CVEsGGPepG------vGCA---------GRGVita---i~~Le~lgaf~~~~DvviyDVLGD-----------------  128 (278)
T COG1348          84 CVESGGPEPG------VGCA---------GRGVITA---INLLEELGAFEEDLDVVIYDVLGD-----------------  128 (278)
T ss_pred             EeecCCCCCC------CCcc---------cchHHHH---HHHHHHhCCccccCCEEEEeccCc-----------------
Confidence            33211 1111      1111         1222232   234444431  1459999999874                 


Q ss_pred             HHHHHHHHHHhhhHhhhhhhcC-CCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886          170 DKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL  248 (276)
Q Consensus       170 ~~l~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l  248 (276)
                                        -+.| +..++                       .....+.+++||.-+.+++..|.++.+.+
T Consensus       129 ------------------VVCGGFAmPi-----------------------Reg~AdeiyIVtSge~MalYAANNI~kgi  167 (278)
T COG1348         129 ------------------VVCGGFAMPI-----------------------REGYADEIYIVTSGEMMALYAANNIAKGI  167 (278)
T ss_pred             ------------------eeecceeeeh-----------------------hcccCcEEEEEecCchHHHHHHHHHHHHH
Confidence                              0111 10111                       12345779999999999999999998888


Q ss_pred             hhC----CCCcCeEEEccc
Q 023886          249 TKF----EIDTHNIIINQV  263 (276)
Q Consensus       249 ~~~----~~~~~g~vvN~~  263 (276)
                      +++    ++++.|+|-|+-
T Consensus       168 ~k~a~~~~~rLgGiIcNsr  186 (278)
T COG1348         168 RKYAKTGGVRLGGIICNSR  186 (278)
T ss_pred             HHHhhcCCcceeeEEecCC
Confidence            764    588999999965

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.56  E-value=1.4e-14  Score=115.75  Aligned_cols=50  Identities=34%  Similarity=0.264  Sum_probs=39.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhcccc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRF   78 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~   78 (276)
                      .|.|+|.+||+||||+|.|||..+|+.|++|++||+|...+ +..+++.+.
T Consensus         2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~   52 (157)
T PF13614_consen    2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEP   52 (157)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccccccccc
Confidence            46799999999999999999999999999999999998544 666666544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.53  E-value=5.2e-13  Score=116.23  Aligned_cols=42  Identities=31%  Similarity=0.326  Sum_probs=36.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++++.+.|++|+||||++++||..+++.|+||++||+|++..
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~  113 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA  113 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence            455544499999999999999999999999999999998644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.47  E-value=6e-12  Score=102.38  Aligned_cols=40  Identities=30%  Similarity=0.465  Sum_probs=36.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++++.|++|+||||++.++|..+++.|++|++||+|++..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            4567799999999999999999999999999999998754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.47  E-value=1.5e-12  Score=103.23  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=35.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.+.||||+||||++.+++..+.+.|.||+++|+|++..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~   40 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP   40 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence            456799999999999999999999999999999998754

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.46  E-value=4.3e-13  Score=101.88  Aligned_cols=100  Identities=27%  Similarity=0.347  Sum_probs=63.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM  110 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (276)
                      ++++||||+||||++.++|..++++|++|++||+|| .++...++......         .......+....    ..+.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~~~~---------~~~i~~g~~~~~----~~g~   67 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEVGEI---------KLLLVMGMGRPG----GEGC   67 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhccCCc---------eEEEEecccccC----CCCC
Confidence            567899999999999999999999999999999999 44444444332210         000111111000    0000


Q ss_pred             chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886          111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL  156 (276)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l  156 (276)
                      .           . .....+++++..+....|||+|+||++++..+
T Consensus        68 ~-----------~-~~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~  101 (116)
T cd02034          68 Y-----------C-PENALLNALLRHLVLTRDEQVVVDTEAGLEHL  101 (116)
T ss_pred             E-----------e-hhhHHHHHHHHHeEccCCCEEEEecHHHHHHH
Confidence            0           0 01125688888863348999999999986654

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK10867 signal recognition particle protein; Provisional

Probab=99.43  E-value=4.3e-12  Score=116.63  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=39.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCCh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL   70 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l   70 (276)
                      ++.++++.|.+|+||||++++||.++++. |+||++||+|++...
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a  143 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA  143 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence            36778888999999999999999999998 999999999997664

>TIGR00347 bioD dethiobiotin synthase

Probab=99.43  E-value=1.9e-12  Score=104.65  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC---------hhHHhccccCCCcceeccCCCceeeecCCcccc
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---------LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE  102 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~---------l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  102 (276)
                      +++..+|+||||+|++||.+|+++|+||.++.-.....         +...++.....        ...     .+   .
T Consensus         2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~--------~~~-----~~---~   65 (166)
T TIGR00347         2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDW--------DEV-----NP---Y   65 (166)
T ss_pred             eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCch--------hcc-----CC---e
Confidence            45668999999999999999999999999974222110         11111111000        000     00   0


Q ss_pred             cccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886          103 ETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (276)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~  182 (276)
                      .+  ...............+  .....+.+.++.+++ +|||||||+|+++..-.....                     
T Consensus        66 ~~--~~~~~p~~~~~~~~~~--~~~~~i~~~~~~l~~-~~D~viid~~g~~~~~~~~~~---------------------  119 (166)
T TIGR00347        66 AF--ALPLSPHIAADQEGRP--IDLEELSKHLRTLEQ-KYDFVLVEGAGGLCVPITEEY---------------------  119 (166)
T ss_pred             ee--CCCCChHHHHHHhCCC--CCHHHHHHHHHHHHh-cCCEEEEEcCCccccCCCCCC---------------------
Confidence            00  0000000011111101  112245666777776 899999999986321100000                     


Q ss_pred             HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                                                  ....+.+.+.++    +++|+.+....+.++....+.+++.++++.|+|+|
T Consensus       120 ----------------------------~~~dl~~~~~~~----vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N  166 (166)
T TIGR00347       120 ----------------------------TTADLIKLLQLP----VILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN  166 (166)
T ss_pred             ----------------------------cHHHHHHHhCCC----EEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence                                        000122223333    79999999999999999999999999999999998

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.42  E-value=1.1e-11  Score=105.12  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=38.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.+++.++||||||||+|++||.++++.|++|++||+||+.+
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~   44 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA   44 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            345688899999999999999999999999999999999875

>TIGR00959 ffh signal recognition particle protein

Probab=99.40  E-value=7.9e-12  Score=114.81  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=39.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCCh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNL   70 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l   70 (276)
                      ++.+++++|.+|+||||++++||.+++ +.|++|++||+|++...
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~  142 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA  142 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence            367889999999999999999999987 58999999999987653

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.39  E-value=9.5e-12  Score=113.76  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=38.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.++.+.|.+|+||||++++||..+++.|+||++|++|++..
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            577888899999999999999999999999999999999764

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.39  E-value=3.1e-12  Score=113.33  Aligned_cols=178  Identities=20%  Similarity=0.193  Sum_probs=111.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC-ChhHHhccccCCCcceec-cCCCceeeecCCccc
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVN-GFSNLYAMEVDPSVE  101 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~  101 (276)
                      ++.+.+.|++.|||+|-||+|.|+|+.++. .++.|+|+|+|.|. +...+|+..+...-+..- ....+.....+.. .
T Consensus       102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~-~  180 (366)
T COG4963         102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSL-L  180 (366)
T ss_pred             hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHH-H
Confidence            344677899999999999999999999996 59999999999764 455666655432111000 0000000000000 0


Q ss_pred             ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      .+++.+..+...+.++.....  .....+..+++.++. .||+||+|.|..+..++.-.                     
T Consensus       181 ~~~~~~l~ll~a~~~~~~~~d--~~~~~~~~Ll~~~~~-~~~~vV~Dlp~~~~~~t~~v---------------------  236 (366)
T COG4963         181 TRLASGLKLLAAPTELAKNYD--LKTGAVERLLDLLRG-SFDFVVVDLPNIWTDWTRQV---------------------  236 (366)
T ss_pred             hccCCCceeecCCcchhhhcc--cccchHHHHHHHhhc-cCCeEEEcCCCccchHHHHH---------------------
Confidence            022222223222222222111  122356788888886 99999999995433221100                     


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCC--CcCeEE
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--DTHNII  259 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~--~~~g~v  259 (276)
                                                           +.  ..+.+++|..|+..+++.++++++.+++.+.  +...+|
T Consensus       237 -------------------------------------L~--~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv  277 (366)
T COG4963         237 -------------------------------------LS--GSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILV  277 (366)
T ss_pred             -------------------------------------Hh--cCCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEE
Confidence                                                 01  2367999999999999999999999998755  455899


Q ss_pred             EccccCC
Q 023886          260 INQVLYD  266 (276)
Q Consensus       260 vN~~~~~  266 (276)
                      +|++-.+
T Consensus       278 ~n~~~~~  284 (366)
T COG4963         278 LNRVGVP  284 (366)
T ss_pred             eeecCCC
Confidence            9998554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.38  E-value=3.6e-11  Score=106.81  Aligned_cols=42  Identities=29%  Similarity=0.261  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..++.+.|.+|+||||++++||..++..|++|+++|+|++..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~  155 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA  155 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence            466666689999999999999999999999999999999654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.33  E-value=4.3e-11  Score=110.23  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+.++++.|.+|+||||++++||..+.+.|++|++||+|+...
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            3567777799999999999999999999999999999998654

>PRK13768 GTPase; Provisional

Probab=99.32  E-value=3.1e-11  Score=104.18  Aligned_cols=42  Identities=40%  Similarity=0.466  Sum_probs=38.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.++++.|+||+||||++.+++.+++..|++|++||+||+..
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~   43 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE   43 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence            467888899999999999999999999999999999999754

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.30  E-value=3.1e-11  Score=87.80  Aligned_cols=33  Identities=48%  Similarity=0.669  Sum_probs=31.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ++++|++|+||||++.++|..+++.|++|+++|
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            567788899999999999999999999999999

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.27  E-value=1.2e-10  Score=104.74  Aligned_cols=41  Identities=27%  Similarity=0.327  Sum_probs=37.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+++.+.|.+|+||||+++.||..+..+|++|++|++|++.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            35666778899999999999999999999999999999986

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.23  E-value=3.8e-10  Score=101.15  Aligned_cols=42  Identities=31%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+++.+.|..|+||||++++||..+..+|++|.+|++|++..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            566766677899999999999999989999999999999865

>PRK14974 cell division protein FtsY; Provisional

Probab=99.14  E-value=9.8e-10  Score=98.08  Aligned_cols=42  Identities=29%  Similarity=0.259  Sum_probs=38.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.++++.|.+|+||||++++||..+...|++|+++++|+...
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~  181 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA  181 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence            578888899999999999999999999999999999997643

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=99.13  E-value=2e-09  Score=91.09  Aligned_cols=41  Identities=7%  Similarity=0.015  Sum_probs=35.9

Q ss_pred             EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+++|+.++..++..+...++.++..++++.|+|+|++.+.
T Consensus       135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~  175 (222)
T PRK00090        135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE  175 (222)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence            37888888888899899999999999999999999998655

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.11  E-value=1.8e-09  Score=98.26  Aligned_cols=44  Identities=32%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH-HhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL-AEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l-a~~G~kVlliD~D~~~~l~   71 (276)
                      .+++++.|.+|+||||++++||..+ ...|++|+++|+|++...+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA  267 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA  267 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence            4677788999999999999999876 5779999999999987644

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.10  E-value=1.4e-09  Score=100.43  Aligned_cols=41  Identities=32%  Similarity=0.264  Sum_probs=35.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHN   69 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~   69 (276)
                      +++++.|.+||||||++++||..++  +.|++|++||+|++..
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            4666668899999999999999998  4589999999999864

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.07  E-value=2.2e-09  Score=89.13  Aligned_cols=42  Identities=33%  Similarity=0.286  Sum_probs=35.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++++++-|..||||||+++-||+.+..+|+||.+|.+|....
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            356777899999999999999999998899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=99.04  E-value=2.5e-10  Score=79.84  Aligned_cols=41  Identities=17%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      .+++++||+|...+..++++....+++.++++.|+|.||.+
T Consensus        25 ~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~   65 (81)
T PF10609_consen   25 IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY   65 (81)
T ss_dssp             -SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            36799999999999999999999999999999999999983

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.04  E-value=5.4e-09  Score=94.27  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh-HHhccccCCCcceeccCCCceeeecCCccccc
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS-DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE  103 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (276)
                      .+++.++...|--|.||||+|.-||.+|.++|+||+||-+|.+.... +-|..-...        -++.+...+      
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q--------~~v~~f~~~------  162 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ--------VGVPFFGSG------  162 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH--------cCCceecCC------
Confidence            34567788889999999999999999999999999999999876532 222111000        001011000      


Q ss_pred             ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886          104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH  154 (276)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~  154 (276)
                                        .+......-++.++..+...||+|||||++-.+
T Consensus       163 ------------------~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~  195 (451)
T COG0541         163 ------------------TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH  195 (451)
T ss_pred             ------------------CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence                              011112244777888877689999999999633

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.03  E-value=6.7e-09  Score=96.85  Aligned_cols=41  Identities=27%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN   69 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~~   69 (276)
                      .++.+.|.+|+||||++.+||..++..  |++|.+|++|++..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi  393 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  393 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            455555899999999999999998875  58999999998764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.02  E-value=1.4e-08  Score=89.86  Aligned_cols=45  Identities=27%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      ...++.+.|++|+||||++..++..+.+.|++|.+|+.||+.+.+
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~   77 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFT   77 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence            456666669999999999999999999999999999999987653

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.92  E-value=2.2e-08  Score=91.05  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D~~~~   69 (276)
                      ..++++.|+.||||||+++.||..+..    .|++|++|++|++..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~  219 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI  219 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence            567888899999999999999998873    589999999999754

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.89  E-value=7.4e-09  Score=90.82  Aligned_cols=42  Identities=29%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~~~   69 (276)
                      .+++.+.|.+|+||||+++.||..++.. | ++|.+|++|++..
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            4566666899999999999999999976 5 8999999999763

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.82  E-value=8.7e-08  Score=83.16  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ..+.+.|++|+||||+...+|..+...|++|.+|++|++.
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            4555668899999999999999999889999999999875

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.80  E-value=9.4e-08  Score=83.81  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  104 (276)
                      +.+-++.+-|-.|+||||+.+-||+.+.++|+||+|.-+|.-. ..-.-|..-...        -+.....         
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er--------~gv~vI~---------  199 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER--------LGVPVIS---------  199 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH--------hCCeEEc---------
Confidence            3466777779999999999999999999999999999999632 222222211000        0100000         


Q ss_pred             cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL  156 (276)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l  156 (276)
                                     ..+|.+.+....+.++..+..+||+||+||++-+++-
T Consensus       200 ---------------~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk  236 (340)
T COG0552         200 ---------------GKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK  236 (340)
T ss_pred             ---------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence                           0023334445566667666568999999999976643

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.76  E-value=1.8e-07  Score=87.45  Aligned_cols=40  Identities=25%  Similarity=0.171  Sum_probs=36.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++|++.++|+||||++++|+.+|+++|++|..+..+|.
T Consensus         4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd   43 (451)
T PRK01077          4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD   43 (451)
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC
Confidence            4577888899999999999999999999999999988654

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=98.76  E-value=2e-07  Score=72.68  Aligned_cols=41  Identities=10%  Similarity=0.015  Sum_probs=35.9

Q ss_pred             EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                      +++|+.|+..++..+....+.++..|+.+.|+|.|+..+.+
T Consensus        71 vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~  111 (134)
T cd03109          71 AILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKE  111 (134)
T ss_pred             EEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCcc
Confidence            78889898889998999999999999999999999887654

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=1.9e-07  Score=82.96  Aligned_cols=95  Identities=19%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  104 (276)
                      ..+.|+.+-|--|+||||++.-||+++.++|+||+||=+|. .+...+-|..........+-  .               
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y--g---------------  161 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY--G---------------  161 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE--e---------------
Confidence            34677777789999999999999999999999999999996 45555555432211111000  0               


Q ss_pred             cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCc
Q 023886          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT  152 (276)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~  152 (276)
                                     +....+......+-++..++.+||+||+||..-
T Consensus       162 ---------------syte~dpv~ia~egv~~fKke~fdvIIvDTSGR  194 (483)
T KOG0780|consen  162 ---------------SYTEADPVKIASEGVDRFKKENFDVIIVDTSGR  194 (483)
T ss_pred             ---------------cccccchHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence                           001112223345566666667999999999985

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=98.74  E-value=3.7e-07  Score=76.64  Aligned_cols=43  Identities=12%  Similarity=0.014  Sum_probs=39.5

Q ss_pred             EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCCCC
Q 023886          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG  269 (276)
Q Consensus       227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~~  269 (276)
                      +|+|+...--.+..+.-.++.+++.|+++.|+|+|+..+..+.
T Consensus       139 vILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~~  181 (223)
T COG0132         139 VILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPELDH  181 (223)
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccCCCchhH
Confidence            8999999999999999999999999999999999999876643

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.65  E-value=1.8e-07  Score=76.71  Aligned_cols=112  Identities=20%  Similarity=0.242  Sum_probs=65.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM  110 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (276)
                      .++-|..|+||||.+.++-.+.-..|+++-+|.+||..-.   |..+...     + +.++...+ +.....++..+.++
T Consensus         6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~---f~y~~~i-----D-iRdlIsvd-DVmEdl~~GPNGgL   75 (273)
T KOG1534|consen    6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH---FNYPVTI-----D-IRDLISVD-DVMEDLDLGPNGGL   75 (273)
T ss_pred             EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh---hCCcccc-----c-HHHhccHH-HHHHHhccCCCccc
Confidence            3888999999999999999999999999999999996432   2211110     0 00000000 00000011111111


Q ss_pred             chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886          111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                      ---...         -...+.++.+.+...+-||+|||||+.+..++.+.+
T Consensus        76 v~cmEy---------l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pV  117 (273)
T KOG1534|consen   76 VYCMEY---------LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPV  117 (273)
T ss_pred             hhHHHH---------HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChh
Confidence            110000         112455665555443569999999999998887665

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.62  E-value=1.1e-06  Score=85.83  Aligned_cols=41  Identities=24%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCC-CcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G-~kVlliD~D~~~   68 (276)
                      .+|+.+-|..|+||||+.+.||..+. ..| ++|.+|+.|.+.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            46777889999999999999999885 566 699999999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.61  E-value=3.5e-07  Score=81.61  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      +...++-+.|.+|+||||++..|+..+...|++|.+|..||+...
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~   98 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR   98 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence            345677788999999999999999999999999999999998664

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.59  E-value=5.9e-07  Score=77.63  Aligned_cols=113  Identities=19%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh--hHHhccccCCCcceeccCCCceeee
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--SDAFQQRFTKTPTLVNGFSNLYAME   95 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l--~~~l~~~~~~~~~~~~~~~~l~~~~   95 (276)
                      |..+... .+..++=+.|-||+||||+.-.|...|.+.|+||.+|-.||....  ..+||.+..-.....  .++++.-.
T Consensus        41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFiRs  118 (323)
T COG1703          41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFIRS  118 (323)
T ss_pred             HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEEee
Confidence            4444443 334567677999999999999999999999999999999997554  356665543211111  13333222


Q ss_pred             cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886           96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH  154 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~  154 (276)
                      .....        .+..+             .....+.+..++...||+|||-|-+.+.
T Consensus       119 ~~srG--------~lGGl-------------S~at~~~i~~ldAaG~DvIIVETVGvGQ  156 (323)
T COG1703         119 SPSRG--------TLGGL-------------SRATREAIKLLDAAGYDVIIVETVGVGQ  156 (323)
T ss_pred             cCCCc--------cchhh-------------hHHHHHHHHHHHhcCCCEEEEEecCCCc
Confidence            11111        11111             1234566666665689999999998543

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.58  E-value=3.4e-07  Score=79.76  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +++-+.|.+|+||||++.+|+..|+++| +|.+|+.|+.+
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~   40 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE   40 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence            3454445569999999999999999999 89999999854

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=98.51  E-value=2.4e-06  Score=83.73  Aligned_cols=37  Identities=22%  Similarity=0.047  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.+++...|+|||+++..|+.+|.++|+||..+=-+
T Consensus         4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi   40 (684)
T PRK05632          4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI   40 (684)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence            4567777999999999999999999999999998633

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.50  E-value=4.7e-06  Score=75.45  Aligned_cols=41  Identities=27%  Similarity=0.256  Sum_probs=35.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-CC-CcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VR-PSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G-~kVlliD~D~~~   68 (276)
                      ..++.+.|..|+||||+++.||..+.. .| ++|.+|++|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            457778899999999999999998764 47 699999999863

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=98.46  E-value=6.3e-06  Score=70.22  Aligned_cols=41  Identities=7%  Similarity=-0.074  Sum_probs=34.7

Q ss_pred             EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+++|+....-.+..+.-..+.++..++++.|+|+|++.+.
T Consensus       137 pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~  177 (231)
T PRK12374        137 PVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPG  177 (231)
T ss_pred             CEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence            37788866777788999999999999999999999999654

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.44  E-value=5.6e-07  Score=75.02  Aligned_cols=106  Identities=17%  Similarity=0.247  Sum_probs=63.6

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM  110 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (276)
                      ++-|.+|.||||-+..+...++..|++|.+|.+||... +..-.+.+...-.++-+.   .....+.|+..        +
T Consensus         6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edv---m~~~~LGPNg~--------l   74 (290)
T KOG1533|consen    6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDV---MEELGLGPNGA--------L   74 (290)
T ss_pred             EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHH---HHHhCCCCchh--------H
Confidence            56699999999999999999999999999999999643 222221111100000000   00001111111        1


Q ss_pred             chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHH
Q 023886          111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLR  157 (276)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~  157 (276)
                      .-....         -...+.++++.++..++-|+|||||+....++
T Consensus        75 ~yc~E~---------l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft  112 (290)
T KOG1533|consen   75 KYCMEY---------LEANIDWLLEKLKPLTDHYVLFDCPGQVELFT  112 (290)
T ss_pred             HHHHHH---------HHhhhHHHHHHhhhccCcEEEEeCCCcEEEEe
Confidence            111011         11245778888887688999999999877664

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=98.43  E-value=3.1e-06  Score=70.30  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+++|+....-.+.++...++.++..|+++.|+|+|++.++
T Consensus       131 ~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~  171 (199)
T PF13500_consen  131 PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP  171 (199)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence            48899999999999999999999999999999999997544

...

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.43  E-value=1e-06  Score=74.99  Aligned_cols=113  Identities=15%  Similarity=0.289  Sum_probs=61.0

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh--HHhccccCCCcceeccCCCceeee
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAME   95 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~--~~l~~~~~~~~~~~~~~~~l~~~~   95 (276)
                      |+.+... .+..++=+.|.||+||||+.-.|+..+.+.|+||.++-.||....+  .+||.+..-....  .-++++.-.
T Consensus        19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~--~d~~vfIRS   96 (266)
T PF03308_consen   19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELS--RDPGVFIRS   96 (266)
T ss_dssp             HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHH--TSTTEEEEE
T ss_pred             HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcC--CCCCEEEee
Confidence            4444432 2345666779999999999999999999999999999999975443  4556543311100  012332221


Q ss_pred             cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886           96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH  154 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~  154 (276)
                      ..        +...+..+             .....+.+..++...||+|||-|-..+.
T Consensus        97 ~a--------tRG~lGGl-------------s~~t~~~v~ll~aaG~D~IiiETVGvGQ  134 (266)
T PF03308_consen   97 MA--------TRGSLGGL-------------SRATRDAVRLLDAAGFDVIIIETVGVGQ  134 (266)
T ss_dssp             E-----------SSHHHH-------------HHHHHHHHHHHHHTT-SEEEEEEESSST
T ss_pred             cC--------cCCCCCCc-------------cHhHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence            11        11111111             1233455555554589999999998533

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.42  E-value=3.7e-07  Score=78.05  Aligned_cols=36  Identities=39%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             eCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           34 GGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        34 s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      -|..|+||||.+.++...+...|++|.+|.+||...
T Consensus         2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~   37 (238)
T PF03029_consen    2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE   37 (238)
T ss_dssp             EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred             CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence            478999999999999999999999999999999765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.37  E-value=1.1e-05  Score=75.47  Aligned_cols=41  Identities=27%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCC-CcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G-~kVlliD~D~~~   68 (276)
                      ..|+.+-|..||||||+++.||..+. +.| ++|.+|++|++.
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            36777889999999999999999886 456 599999999863

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.37  E-value=5.1e-06  Score=75.05  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=35.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~   67 (276)
                      +.+++..-|.-||||||+-+-||+.+.  ...+||.+|.+|..
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY  244 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY  244 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence            367777779999999999999999999  45679999999975

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=8e-06  Score=74.54  Aligned_cols=106  Identities=22%  Similarity=0.226  Sum_probs=69.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCccccc
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE  103 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (276)
                      ++.+-++.+.|-.||||||-=+-+|+.|-+.+.|||+.-+|+- .+.-.-|+....          ++..+.  + ..  
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~----------rl~~l~--~-~~--  439 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE----------RLSALH--G-TM--  439 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH----------HHHHhc--c-ch--
Confidence            4445556666899999999999999999999999999999984 334344433211          111000  0 00  


Q ss_pred             ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886          104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL  156 (276)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l  156 (276)
                            .     ++-....|.+....-++.+++.++..||+|+|||++.++.-
T Consensus       440 ------v-----~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~  481 (587)
T KOG0781|consen  440 ------V-----ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNN  481 (587)
T ss_pred             ------h-----HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCC
Confidence                  0     11111233344456688888888779999999999976543

>PRK00784 cobyric acid synthase; Provisional

Probab=98.20  E-value=3e-05  Score=73.27  Aligned_cols=36  Identities=22%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.+.+++...|||||++++.|+.+|+++|++|..+=
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K   38 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK   38 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence            345677778999999999999999999999988663

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=98.18  E-value=9.8e-06  Score=72.94  Aligned_cols=38  Identities=32%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++-|--++||||+|.-||..+-++|+||.+||+|+.
T Consensus        75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG  112 (398)
T COG1341          75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG  112 (398)
T ss_pred             EEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence            34455667899999999999999999999999999973

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.15  E-value=9.8e-06  Score=66.27  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +++.|.+|+|||+++..++...++.|.+|+++.++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~   38 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES   38 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            5788999999999999999999999999999999854

A related protein is found in archaea.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.13  E-value=1.7e-05  Score=67.20  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=41.1

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .|+.++.+  +...++.++|.+|+|||+++.++|...++.|.+|++||++
T Consensus        11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            35566642  3367889999999999999999999999999999999999

>cd01394 radB RadB

Probab=98.11  E-value=1.8e-05  Score=66.67  Aligned_cols=50  Identities=24%  Similarity=0.207  Sum_probs=41.9

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |+.++.+  ....++.+.|.+|+||||++.++|..++..|.+|+++|++...
T Consensus         8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~   59 (218)
T cd01394           8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS   59 (218)
T ss_pred             HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence            5555542  3467888999999999999999999999999999999998543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.08  E-value=7.8e-05  Score=69.70  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++++...|+|||++++.|+.+|+++|+||..+=.
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~   36 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV   36 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence            56777799999999999999999999999998853

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=98.07  E-value=0.00012  Score=68.96  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .|++.-.+||||++++.|+..|.++|++|..+-.
T Consensus         2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp   35 (475)
T TIGR00313         2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS   35 (475)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            4566688999999999999999999999997644

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.04  E-value=3.4e-05  Score=64.48  Aligned_cols=40  Identities=28%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ...++.+.|.+|+|||+++..++...++.|.+|+.||++-
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3577888899999999999999999999999999999985

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.98  E-value=4.9e-05  Score=64.69  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++.+.|..|+||||+|.+++..+++.|.++++++.+..
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~   63 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT   63 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4578888999999999999999999999999999998753

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.97  E-value=0.00013  Score=66.30  Aligned_cols=34  Identities=29%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      +|++.....|+||||+|..|..+|+++|.+|-=+
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf   35 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF   35 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence            4677777999999999999999999999888543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.95  E-value=5.7e-05  Score=64.37  Aligned_cols=49  Identities=18%  Similarity=0.234  Sum_probs=40.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++.++.+  +...++.+.|.+|+|||+++.++++..+++|.+|++++++-.
T Consensus        14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~   64 (234)
T PRK06067         14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT   64 (234)
T ss_pred             HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            5555543  346777888999999999999999998889999999999843

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=97.95  E-value=1.1e-05  Score=75.33  Aligned_cols=69  Identities=14%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             hhhhccccccchhhhh-c----C-CceEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcccc
Q 023886            8 QDQELEIPEGSVRNIL-E----Q-DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~-~----~-~~~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~   78 (276)
                      ..|.|..++.++.... +    + +.+.|.++|..+   |+||||+|+|||..|++.|+||+++  =.+++++..|+.+.
T Consensus        30 ~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~kg  107 (557)
T PRK13505         30 DLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIKG  107 (557)
T ss_pred             HHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCCC
Confidence            4567777787775432 1    2 235566899888   9999999999999999999999999  33566677776553

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.91  E-value=8.6e-05  Score=58.69  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +++.|++|+||||++..++..++..|.+|++++.+...+
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence            567899999999999999999999999999999997654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.91  E-value=7.3e-06  Score=70.02  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=36.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.++++-|-.|.||||....|-.++.+.+.+--+|.+||.
T Consensus        19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA   58 (366)
T KOG1532|consen   19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA   58 (366)
T ss_pred             CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence            4566788999999999999999999999888999999986

>TIGR02012 tigrfam_recA protein RecA

Probab=97.89  E-value=3.4e-05  Score=68.54  Aligned_cols=50  Identities=18%  Similarity=0.082  Sum_probs=41.5

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|+.++. +  +..+++.+.|.+|+||||+|.+++...++.|.+|++||+...
T Consensus        42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~   94 (321)
T TIGR02012        42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA   94 (321)
T ss_pred             HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence            4566664 2  345788888999999999999999999999999999998743

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.85  E-value=0.0002  Score=67.10  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=26.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV   55 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~   55 (276)
                      ++++++.++....|+||||+|+.|+.+|.++
T Consensus       236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~  266 (476)
T PRK06278        236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK  266 (476)
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            4556677777799999999999999999975

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.82  E-value=4.8e-05  Score=67.67  Aligned_cols=50  Identities=20%  Similarity=0.118  Sum_probs=41.6

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|+.++. +  +..+|+.+.|.+|+||||+|.+++...++.|.+|++||+.-.
T Consensus        42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~   94 (325)
T cd00983          42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA   94 (325)
T ss_pred             HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence            4566665 2  346788888999999999999999999999999999998744

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.82  E-value=0.00012  Score=63.45  Aligned_cols=40  Identities=15%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ...++++.|.+|+|||++|.++|...+++|.+|++|+++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee   74 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES   74 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence            3577899999999999999999999999999999999994

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.76  E-value=0.00015  Score=61.22  Aligned_cols=51  Identities=22%  Similarity=0.171  Sum_probs=40.4

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCC------CcEEEEecCCCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPAHN   69 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G------~kVlliD~D~~~~   69 (276)
                      |+.++.+  +...++.+.|.+|+|||+++.++|...+..|      .+|+.||.+...+
T Consensus         8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~   66 (226)
T cd01393           8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR   66 (226)
T ss_pred             HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCC
Confidence            4455432  3356788889999999999999999988777      8999999986543

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=97.73  E-value=4.7e-05  Score=70.51  Aligned_cols=50  Identities=18%  Similarity=0.052  Sum_probs=40.1

Q ss_pred             eEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886           28 LKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT   79 (276)
Q Consensus        28 ~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~   79 (276)
                      +.|.++|..+   |+||||+|+|||..|++.|+||+++  =.+++++..||.+..
T Consensus        39 k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kgg   91 (524)
T cd00477          39 KLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKGG   91 (524)
T ss_pred             eEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCCC
Confidence            4455888888   9999999999999999999999988  335666666665543

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.72  E-value=0.00027  Score=56.42  Aligned_cols=36  Identities=28%  Similarity=0.174  Sum_probs=32.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+.|..|+||||++..|...+..+|+||.+|..|.
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~   37 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH   37 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456688899999999999999999999999998773

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.71  E-value=6.9e-05  Score=60.84  Aligned_cols=40  Identities=30%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++++.|-+|+||||+|..|+..+...|.+|.++|.|..
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            4577888999999999999999999989999999999964

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.71  E-value=0.00014  Score=61.81  Aligned_cols=52  Identities=17%  Similarity=0.176  Sum_probs=39.3

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL   70 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l   70 (276)
                      ++.++.+  +...++.+.|.+|+|||+++.+++...+..      +.+|++||++...+.
T Consensus         8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~   67 (235)
T cd01123           8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP   67 (235)
T ss_pred             hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH
Confidence            4444442  335778899999999999999999776543      379999999875443

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.70  E-value=5.6e-05  Score=60.72  Aligned_cols=52  Identities=21%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhcc
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ   76 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~   76 (276)
                      .....++-+.|-.|+||||+|..|...|-++|++|-++|.|. .++|..-||.
T Consensus        20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF   72 (197)
T COG0529          20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF   72 (197)
T ss_pred             CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence            334567777899999999999999999999999999999995 5666655554

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.68  E-value=6.9e-05  Score=59.64  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=34.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++.+.|..|+||||+|..|...|.+.|++|.++|.|.
T Consensus         3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~   40 (156)
T PF01583_consen    3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN   40 (156)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence            56788899999999999999999999999999999995

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.67  E-value=0.00022  Score=67.40  Aligned_cols=50  Identities=12%  Similarity=0.123  Sum_probs=42.3

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .++.++.+  ....+++++|.+|+||||++..++...+++|.+|+++..+-.
T Consensus       251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs  302 (484)
T TIGR02655       251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES  302 (484)
T ss_pred             hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            35555653  346788999999999999999999999999999999999954

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09354 recA recombinase A; Provisional

Probab=97.66  E-value=0.00014  Score=65.37  Aligned_cols=52  Identities=17%  Similarity=0.077  Sum_probs=42.9

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|+.++. +  +..+|+.+.|..|+||||+|..++...++.|.+++.||+.-...
T Consensus        47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~  101 (349)
T PRK09354         47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD  101 (349)
T ss_pred             HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence            4666665 2  34678888899999999999999999999999999999985433

>PRK07667 uridine kinase; Provisional

Probab=97.66  E-value=0.0001  Score=61.05  Aligned_cols=39  Identities=21%  Similarity=0.092  Sum_probs=36.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++.++|.+|+||||+|..|+..+.+.|.+|.+++.|.
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            467788999999999999999999999999999999995

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.0023  Score=59.11  Aligned_cols=40  Identities=28%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hC-CCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EV-RPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~-G~kVlliD~D~~   67 (276)
                      ..++.+-|..|+||||+..-||..+. .. +.+|.++-.|..
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~  232 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY  232 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            35666779999999999999998654 33 478999988874

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.62  E-value=0.00021  Score=60.26  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=27.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..+++.|++|+||||+|.+|+       .++++++.|-.
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~   44 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS   44 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence            447888999999999998884       57999999974

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.61  E-value=0.0018  Score=60.08  Aligned_cols=38  Identities=26%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.++....|+||||+++.|+.+|.++|.+|--+=..|
T Consensus         3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp   40 (433)
T PRK13896          3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP   40 (433)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence            46677779999999999999999999999997665433

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.59  E-value=0.00051  Score=55.70  Aligned_cols=39  Identities=21%  Similarity=0.121  Sum_probs=33.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++.+.|..|+||||+...+...|...|.||..|=.+
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~   43 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT   43 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence            355677789999999999999999999999999999543

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.58  E-value=0.00029  Score=59.60  Aligned_cols=50  Identities=22%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~   68 (276)
                      ++.++.+  +...++.+.|.+|+|||+++..++...+++ |.+|++|.++...
T Consensus         8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~   60 (226)
T PF06745_consen    8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP   60 (226)
T ss_dssp             HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence            4445532  335678889999999999999999999988 9999999998543

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK04296 thymidine kinase; Provisional

Probab=97.58  E-value=0.00041  Score=57.23  Aligned_cols=34  Identities=26%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      .+.++.|..|.||||.+..++..++..|++|+++
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~   36 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF   36 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            5678899999999999999999999999999999

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=97.55  E-value=0.00011  Score=68.75  Aligned_cols=51  Identities=16%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             ceEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886           27 SLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT   79 (276)
Q Consensus        27 ~~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~   79 (276)
                      .+.|.++|--+   |+||||+|++||..|++.|+||  ||+=.+++++..||.+..
T Consensus        54 ~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgg  107 (578)
T PRK13506         54 GKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGG  107 (578)
T ss_pred             CeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCC
Confidence            34555888788   9999999999999999999999  777557888888877654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.55  E-value=0.00038  Score=52.95  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..+++.|.+|+||||++..+|..+...++.++.++.+....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~   43 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE   43 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence            34677789999999999999999998877899999886543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.00053  Score=62.07  Aligned_cols=110  Identities=18%  Similarity=0.275  Sum_probs=71.5

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeee
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAME   95 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~   95 (276)
                      .+.+++.+  -+..++.++|-+|+||||+-..+|..+|+++ |||+|...-...--.+-..+.....      +++... 
T Consensus        81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~------~~l~l~-  152 (456)
T COG1066          81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPT------NNLYLL-  152 (456)
T ss_pred             HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCc------cceEEe-
Confidence            34445544  3457788999999999999999999999998 9999998865432222222211000      111111 


Q ss_pred             cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHH
Q 023886           96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL  165 (276)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~  165 (276)
                                                    ....+.++++.+.+.++|++|||+=-++..-.+-+.|-+.
T Consensus       153 ------------------------------aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsV  192 (456)
T COG1066         153 ------------------------------AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSV  192 (456)
T ss_pred             ------------------------------hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcH
Confidence                                          1124566777776668999999998876666655555443

>PRK05973 replicative DNA helicase; Provisional

Probab=97.52  E-value=0.00014  Score=61.97  Aligned_cols=41  Identities=17%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +..++++.|.+|+|||+++.++|...++.|++|++++++..
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes  103 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT  103 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence            35678999999999999999999999999999999999965

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.50  E-value=0.00056  Score=60.91  Aligned_cols=52  Identities=25%  Similarity=0.200  Sum_probs=39.4

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~   69 (276)
                      .++.++.+  +...|.-+.|.+|+|||+++..+|...+.      .|.+|+.||+.-..+
T Consensus        84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~  143 (313)
T TIGR02238        84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR  143 (313)
T ss_pred             HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC
Confidence            35555553  44688889999999999999999976542      356999999986544

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.49  E-value=0.00052  Score=58.66  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHh------------CCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAE------------VRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~------------~G~kVlliD~D~~   67 (276)
                      +.++.|.||+||||++..+|.++|.            .+.+|++++++-.
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~   52 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP   52 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence            4578899999999999999999873            4568999999853

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK08233 hypothetical protein; Provisional

Probab=97.47  E-value=0.00034  Score=56.83  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .++++.|.+|+||||+|..||..+.  +.+++..|.+.+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~   41 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFD   41 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcc
Confidence            5677788889999999999998874  2478888887543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.46  E-value=0.00044  Score=62.96  Aligned_cols=48  Identities=25%  Similarity=0.349  Sum_probs=39.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.++.+  .+..++++.|.+|+||||++..+|..+++.|.+|++|+...
T Consensus        71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            4444432  23578899999999999999999999999999999999874

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK06696 uridine kinase; Validated

Probab=97.45  E-value=0.00024  Score=60.10  Aligned_cols=43  Identities=23%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+.+.++.++|.+|+||||+|..|+..|...|.+|+.+.+|--
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            3456788999999999999999999999988999999888843

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.45  E-value=0.00018  Score=61.77  Aligned_cols=36  Identities=31%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .-+++.|++|+|||+++.++|.++.+.|++|+++++
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~  135 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV  135 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence            457899999999999999999999999999999954

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.43  E-value=0.00075  Score=60.28  Aligned_cols=54  Identities=17%  Similarity=0.162  Sum_probs=40.8

Q ss_pred             cchhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886           17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL   70 (276)
Q Consensus        17 ~~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l   70 (276)
                      ..+..++.+  +...++.+.|.+|+|||+++.++|...+..      +.+|++||++-..+.
T Consensus        89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~  150 (317)
T PRK04301         89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP  150 (317)
T ss_pred             HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCH
Confidence            345556543  346788889999999999999999887642      359999999965443

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.43  E-value=0.00027  Score=58.64  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ...++++.|..|+||||++..|+..+...|..++++|.|...
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            356777779999999999999999999889999999999743

>TIGR00416 sms DNA repair protein RadA

Probab=97.38  E-value=0.00051  Score=64.27  Aligned_cols=41  Identities=27%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+..++++.|.+|+||||++..+|..+++.|.+|++|+.+.
T Consensus        92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE  132 (454)
T TIGR00416        92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE  132 (454)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence            34678899999999999999999999999999999999874

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK04328 hypothetical protein; Provisional

Probab=97.38  E-value=0.0011  Score=57.00  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|+.++.+  +...++.+.|.+|+|||+++.+++...++.|.++++|+++-.
T Consensus        11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~   62 (249)
T PRK04328         11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH   62 (249)
T ss_pred             hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence            35555543  346778889999999999999999998889999999999854

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.37  E-value=0.00084  Score=62.74  Aligned_cols=48  Identities=27%  Similarity=0.357  Sum_probs=40.2

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.++.+  ....++++.|.+|+||||++..+|..+++.|.+|++++...
T Consensus        69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee  118 (446)
T PRK11823         69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE  118 (446)
T ss_pred             HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            4555543  33578899999999999999999999998899999999874

>PHA02542 41 41 helicase; Provisional

Probab=97.37  E-value=0.00027  Score=66.32  Aligned_cols=51  Identities=20%  Similarity=0.085  Sum_probs=41.5

Q ss_pred             chhhhh-cC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           18 SVRNIL-EQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        18 ~l~~~~-~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .|..++ .+ .+..++++++.+|+||||++.|+|...++.|++|++++++...
T Consensus       178 ~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~  230 (473)
T PHA02542        178 ILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE  230 (473)
T ss_pred             HHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence            455555 22 3346788999999999999999999999999999999999643

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.37  E-value=0.00024  Score=53.73  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      ++++.|.+|+||||+|..||..+   |..++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~---~~~~i   28 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL---GFPVI   28 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---TCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCeEE
Confidence            47889999999999999999877   55554

...

>PF13479 AAA_24: AAA domain

Probab=97.36  E-value=0.00075  Score=56.72  Aligned_cols=31  Identities=35%  Similarity=0.521  Sum_probs=26.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+++.|.+|+||||++..+        .++++||+|...
T Consensus         5 ~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~   35 (213)
T PF13479_consen    5 KILIYGPPGSGKTTLAASL--------PKPLFIDTENGS   35 (213)
T ss_pred             EEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence            3577799999999998887        689999999864

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.35  E-value=0.00023  Score=61.24  Aligned_cols=36  Identities=39%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++.|.+|+||||+|..||..+...|.+|.++|.|.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~   37 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL   37 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence            688899999999999999999999999999998884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.33  E-value=0.00031  Score=57.46  Aligned_cols=37  Identities=35%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      |+.++|..|+||||+|..|+..+...|.++.+|..|-
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd   37 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD   37 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence            3678899999999999999999999999999999994

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.31  E-value=0.0021  Score=51.99  Aligned_cols=35  Identities=20%  Similarity=0.106  Sum_probs=29.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+.. ..|.||||.|..+|...+..|+||+++=.--
T Consensus         9 ~v~~-g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK   43 (173)
T TIGR00708         9 IVHT-GNGKGKTTAAFGMALRALGHGKKVGVIQFIK   43 (173)
T ss_pred             EEEC-CCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence            3443 4999999999999999999999999985543

Alternate name: corrinoid adenosyltransferase.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.30  E-value=0.00032  Score=55.51  Aligned_cols=38  Identities=24%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +++.|.+|+||||+|..|+..+...|.++.++|.|...
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r   39 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR   39 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence            57789999999999999999999999999999988643

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.30  E-value=0.0011  Score=58.85  Aligned_cols=53  Identities=19%  Similarity=0.208  Sum_probs=40.3

Q ss_pred             cchhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886           17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN   69 (276)
Q Consensus        17 ~~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~   69 (276)
                      ..++.++.+  +...++.+.|.+|+||||++..+|...+.      .+.+|+.||+.-..+
T Consensus        82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~  142 (310)
T TIGR02236        82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFR  142 (310)
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCC
Confidence            346666653  34688889999999999999999988763      234999999986433

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF13245 AAA_19: Part of AAA domain

Probab=97.30  E-value=0.00046  Score=48.12  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D   65 (276)
                      ..+.++.|-+|.|||+++++++..+...    |++|+++-..
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t   51 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT   51 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence            3456779999999999999999999866    8899999655

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.30  E-value=0.0016  Score=62.00  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=41.4

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      .|+.++.+  +...++++.|-+|+|||+++.+++...+++ |.+|++|.++-.
T Consensus        19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~   71 (509)
T PRK09302         19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES   71 (509)
T ss_pred             hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            45566542  446888899999999999999999988887 999999999954

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.28  E-value=0.002  Score=51.43  Aligned_cols=30  Identities=23%  Similarity=0.139  Sum_probs=26.3

Q ss_pred             CCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           35 GKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .-.|.||||.|..+|...+.+|+||++|=.
T Consensus         9 ~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF   38 (159)
T cd00561           9 TGNGKGKTTAALGLALRALGHGYRVGVVQF   38 (159)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence            344999999999999999999999999543

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=97.26  E-value=0.01  Score=50.33  Aligned_cols=42  Identities=26%  Similarity=0.307  Sum_probs=36.2

Q ss_pred             EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886           31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD   72 (276)
Q Consensus        31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~   72 (276)
                      .++.| -.|.||-.+|+.++..|..+|++|-.+=+||.-|..-
T Consensus         4 ~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~   46 (255)
T cd03113           4 FVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDP   46 (255)
T ss_pred             EEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCC
Confidence            34545 7899999999999999999999999999999877543

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.25  E-value=0.0013  Score=64.77  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|+.++. +  +..+++.+.|..|+||||++..++...++.|.+|+.||......
T Consensus        47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~  101 (790)
T PRK09519         47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD  101 (790)
T ss_pred             HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence            4666665 2  34688889999999999999999998889999999999986544

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.24  E-value=0.002  Score=58.04  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=38.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh---C---CCcEEEEecCCCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE---V---RPSVLIISTDPAHN   69 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~---~---G~kVlliD~D~~~~   69 (276)
                      |+.++.+  +...|.-+.|.+|+|||+++.++|...+.   .   +.+|+.||..-..+
T Consensus       115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~  173 (344)
T PLN03187        115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR  173 (344)
T ss_pred             HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCC
Confidence            5555553  34688889999999999999999976652   1   36999999985433

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.21  E-value=0.0042  Score=51.89  Aligned_cols=48  Identities=23%  Similarity=0.156  Sum_probs=39.3

Q ss_pred             hhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        21 ~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+++.+..+++.+.|-.|+||||+...+...+. .+.+|.++..|+..+
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~   62 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITK   62 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCc
Confidence            345566788888999999999999999988765 457999999998543

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PTZ00035 Rad51 protein; Provisional

Probab=97.21  E-value=0.0019  Score=58.17  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~   67 (276)
                      .++.++.+  +...++.+.|..|+||||++..++.....      .+.+|+.||....
T Consensus       106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence            35555543  34678888999999999999999876652      4569999999854

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.19  E-value=0.0018  Score=61.72  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .++.++.+  +...++.+.|.+|+|||+++.+++...++.|.+|++|+++-.
T Consensus       261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~  312 (509)
T PRK09302        261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES  312 (509)
T ss_pred             HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            45555542  235667778999999999999999999999999999999853

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.17  E-value=0.00056  Score=56.19  Aligned_cols=40  Identities=33%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh----------CCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~----------~G~kVlliD~D~~~   68 (276)
                      .+.++.|.+|+||||++.++|.+++.          .+.+|++|++|...
T Consensus        33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~   82 (193)
T PF13481_consen   33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE   82 (193)
T ss_dssp             SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence            46788899999999999999999997          57899999999764

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.17  E-value=0.0007  Score=57.76  Aligned_cols=41  Identities=17%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      ...+++++|.+|+|||+++.+++..++.. |.+|+.++++..
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~   53 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS   53 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            34678999999999999999999999987 999999999964

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PHA00729 NTP-binding motif containing protein

Probab=97.17  E-value=0.00075  Score=56.94  Aligned_cols=39  Identities=18%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-------------hCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-------------EVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-------------~~G~kVlliD~D~   66 (276)
                      ..-+++.|.+|+||||+|..+|..+.             ..|++++.+|.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~   68 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPD   68 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHH
Confidence            34467889999999999999999875             4567788888763

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.17  E-value=0.00081  Score=52.69  Aligned_cols=36  Identities=33%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE-EEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL-IISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl-liD~D~   66 (276)
                      |.|+ |.-|+||||++..|...|.++|+||. +.|.|.
T Consensus         3 v~Vv-G~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    3 VQVV-GPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             EEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            3444 55699999999999999999999999 889998

>PRK06762 hypothetical protein; Provisional

Probab=97.17  E-value=0.00055  Score=54.92  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=30.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++++.|..|+||||+|..|+..+   |..+.+++.|.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~   37 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDV   37 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence            4677888999999999999999887   45688888774

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.15  E-value=0.00064  Score=59.09  Aligned_cols=41  Identities=24%  Similarity=0.186  Sum_probs=36.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      ...++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus        29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~   70 (271)
T cd01122          29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP   70 (271)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence            34678899999999999999999999887 999999999853

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.14  E-value=0.0012  Score=59.89  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH--HhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL--AEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l--a~~G~kVlliD~D~   66 (276)
                      +++++.|-+|+|||.++.+++..+  ...+.+++++-...
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~   41 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH   41 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence            578999999999999999999999  77788887776553

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.11  E-value=0.0029  Score=50.65  Aligned_cols=40  Identities=23%  Similarity=0.095  Sum_probs=33.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++|+=+.|.-|+||||+...+...|.++|+||.+|=-...
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            4566566788999999999999999999999999965543

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.10  E-value=0.0014  Score=55.57  Aligned_cols=36  Identities=25%  Similarity=0.038  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.+.|..|+||||++..|+..|.++|+||.+|..
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~   37 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH   37 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            456566667999999999999999999999999954

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.09  E-value=0.0033  Score=56.65  Aligned_cols=52  Identities=19%  Similarity=0.170  Sum_probs=38.3

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~   69 (276)
                      .++.++.+  ....++.+.|.+|+|||+++.++|...+.      .+.+|+.||++-..+
T Consensus       111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~  170 (342)
T PLN03186        111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFR  170 (342)
T ss_pred             HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCcc
Confidence            35555543  34678889999999999999999976542      224899999996544

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.09  E-value=0.0011  Score=57.35  Aligned_cols=49  Identities=27%  Similarity=0.252  Sum_probs=42.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      |+.++.+  +...++++.|.+|+|||+++.+++...++.|.+|++|.+|-.
T Consensus        12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            4555553  557888999999999999999999999999999999999964

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.08  E-value=0.0008  Score=58.13  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=31.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.|++|+|||.+|+++|..+.+.|.+|+++..
T Consensus       108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~  141 (254)
T COG1484         108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA  141 (254)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            6788999999999999999999988999999854

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.06  E-value=0.0052  Score=50.49  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=32.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+.+.+-.|.||||.|..+|...+..|+||++|=.=-.
T Consensus        24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg   61 (191)
T PRK05986         24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG   61 (191)
T ss_pred             eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence            45566788999999999999999999999999976543

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.05  E-value=0.0084  Score=53.38  Aligned_cols=50  Identities=16%  Similarity=0.056  Sum_probs=35.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh--hHHhccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--SDAFQQR   77 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l--~~~l~~~   77 (276)
                      -+|+-+.|..|+||||++..+...+.+.|..++.||.....+.  ...+|.+
T Consensus        53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvd  104 (322)
T PF00154_consen   53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVD  104 (322)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--
T ss_pred             CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCcc
Confidence            4666555778999999999999999889999999999866543  3334443

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.01  E-value=0.0012  Score=53.56  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=34.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..++++.|-.|+||||++..|+..|...+..+.++|.|.
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~   45 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE   45 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence            457788999999999999999999998888899998764

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.00  E-value=0.0015  Score=53.38  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+..++++.|..|+||||++..|+..+...|..++++|.|.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~   56 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN   56 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence            34567889999999999999999999988888899999885

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.99  E-value=0.00066  Score=56.06  Aligned_cols=39  Identities=26%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+++++|-+|+||||.|-+||..|.+.+.+|.-+..|-.
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~   40 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL   40 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence            457888999999999999999999999999998888743

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=96.99  E-value=0.0033  Score=57.87  Aligned_cols=36  Identities=22%  Similarity=0.061  Sum_probs=30.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +|+-+.|+-|+||||+...|...|.++|+||.+|=-
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH   37 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH   37 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            455455656999999999999999999999999643

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.98  E-value=0.0011  Score=54.24  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=29.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      =+++.|..|+|||.+|..+|..+.+.|++|+.++.
T Consensus        49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~   83 (178)
T PF01695_consen   49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA   83 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred             EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence            36677889999999999999999999999999975

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.95  E-value=0.0046  Score=55.15  Aligned_cols=52  Identities=17%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh---CC---CcEEEEecCCCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE---VR---PSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~---~G---~kVlliD~D~~~~   69 (276)
                      .++.++.+  +...|+.+.|.+|+||||++..++...+.   .|   .+|+.||.....+
T Consensus        84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~  143 (316)
T TIGR02239        84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFR  143 (316)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCC
Confidence            35554443  44788889999999999999999874432   33   4899999986533

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=96.95  E-value=0.00099  Score=59.80  Aligned_cols=36  Identities=31%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~   66 (276)
                      .++.|-+|+||||++..|+..|. ..|.+|.++|.|-
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd   38 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD   38 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence            57889999999999999999998 5899999999994

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=96.94  E-value=0.0018  Score=50.77  Aligned_cols=57  Identities=25%  Similarity=0.390  Sum_probs=43.9

Q ss_pred             hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccc
Q 023886           20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQR   77 (276)
Q Consensus        20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~   77 (276)
                      ++++.+++.. +-+.|-.|.||||+|++|..+|-++|+-.-.+|.|. .+++..-||.+
T Consensus        24 q~l~~qkGcv-iWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~   81 (207)
T KOG0635|consen   24 QKLLKQKGCV-IWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFK   81 (207)
T ss_pred             HHHhcCCCcE-EEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcc
Confidence            3455566554 455589999999999999999999999999999996 56665555443

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.93  E-value=0.0022  Score=51.37  Aligned_cols=39  Identities=31%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +++.+.|..|+||||++..|...|...|++|..|-.|..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~   40 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH   40 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            466677778999999999999999999999999876643

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK06526 transposase; Provisional

Probab=96.92  E-value=0.00065  Score=58.68  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -+++.|++|+|||++|.++|..+.+.|++|+.+.+
T Consensus       100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~  134 (254)
T PRK06526        100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA  134 (254)
T ss_pred             eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence            46788999999999999999999999999987533

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.91  E-value=0.1  Score=43.58  Aligned_cols=41  Identities=20%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +-..++.+=|-.|.|||-++..+++-+-..|++|.++....
T Consensus        26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~   66 (235)
T COG2874          26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL   66 (235)
T ss_pred             ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech
Confidence            33577888899999999999999999999999999998863

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.90  E-value=0.0048  Score=54.07  Aligned_cols=49  Identities=18%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+..++.++..++-+.|.+|+||||+...+...+... +++.+|+.|...
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t  143 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT  143 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence            4555566777788888999999999999999988765 589999999753

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.89  E-value=0.0015  Score=56.42  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=35.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.++|-.|+||||++..++..|.+.|.+|.+|+.|.-+.
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            556889999999999999999999999999999997654

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.88  E-value=0.0019  Score=44.00  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.|..|+||||++..|+..+  .|.++.++|.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            5667999999999999999999  6788888876

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.87  E-value=0.027  Score=49.22  Aligned_cols=46  Identities=22%  Similarity=0.094  Sum_probs=38.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      .+|+=+-|-.|+||||+|..++....+.|.+|..||+.-.-.....
T Consensus        60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~  105 (279)
T COG0468          60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERA  105 (279)
T ss_pred             ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHH
Confidence            5677677899999999999999999999999999999866554433

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.85  E-value=0.0022  Score=53.59  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ...++.++|.+|+||||++..|+..+  .+.++.+++.|..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~   43 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY   43 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence            35677888999999999999999988  4568999999964

>PRK05439 pantothenate kinase; Provisional

Probab=96.85  E-value=0.0023  Score=56.78  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=35.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~   67 (276)
                      +.+.|+.++|-+|+||||+|..|+..+.+.  |.+|.+|..|--
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            345677899999999999999999988764  789999999943

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.85  E-value=0.0018  Score=56.06  Aligned_cols=50  Identities=20%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~   68 (276)
                      |..++.+ .+..+.++.+.+|+|||+++.++|..++.. |.+|+++.++...
T Consensus         9 LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~   60 (259)
T PF03796_consen    9 LDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE   60 (259)
T ss_dssp             HHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred             HHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence            4444432 334678999999999999999999999987 6999999999653

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.84  E-value=0.0016  Score=49.91  Aligned_cols=47  Identities=23%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+.......+++.|.+|+|||+++..++..+...+.+|..++.....
T Consensus        13 ~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~   59 (151)
T cd00009          13 ALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL   59 (151)
T ss_pred             HHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence            33343456678899999999999999999998888889988876543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.83  E-value=0.0019  Score=54.38  Aligned_cols=49  Identities=14%  Similarity=0.264  Sum_probs=39.4

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++.+........+++.|+.|+|||+++..++..+.+.|.+++.++++.
T Consensus        28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~   76 (226)
T TIGR03420        28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE   76 (226)
T ss_pred             HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence            3444443445667788899999999999999999888899999999874

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.83  E-value=0.0016  Score=55.33  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=43.2

Q ss_pred             hhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE-EecCCC
Q 023886           10 QELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDPA   67 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll-iD~D~~   67 (276)
                      +.+..+...|...... ....++.+.|..|+||||++..|+..+...+..+.+ |..|..
T Consensus        14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            3344444555555444 556777889999999999999999999988777766 888753

>PRK15453 phosphoribulokinase; Provisional

Probab=96.83  E-value=0.0022  Score=55.81  Aligned_cols=42  Identities=19%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..|+.+.|-.|+||||+|..|+..|...|.++.+|+.|..+.
T Consensus         5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            345677899999999999999999988888999999997553

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.80  E-value=0.0025  Score=53.94  Aligned_cols=49  Identities=22%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++.++.+  +...++++.|.+|+||||++.+++...++.|.+|++++++..
T Consensus         9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~   59 (229)
T TIGR03881         9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES   59 (229)
T ss_pred             HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            4454432  345778888999999999999999888889999999999743

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK00089 era GTPase Era; Reviewed

Probab=96.80  E-value=0.016  Score=50.90  Aligned_cols=32  Identities=31%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+.+-|.+|+||||+.-.|.      |.++..+.-.++
T Consensus         7 ~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~   38 (292)
T PRK00089          7 FVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQ   38 (292)
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCceeecCCCCC
Confidence            35667999999999987764      566665554443

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.80  E-value=0.0027  Score=53.64  Aligned_cols=49  Identities=22%  Similarity=0.160  Sum_probs=39.6

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++.++.+  +...++.+.|.+|+|||+++.+++...+++|.+|++++++-.
T Consensus         5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~   55 (224)
T TIGR03880         5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER   55 (224)
T ss_pred             hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            4455432  235677778899999999999999998889999999999864

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK12377 putative replication protein; Provisional

Probab=96.80  E-value=0.002  Score=55.41  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .-+++.|..|+|||.+|.++|..+.+.|++|+.+...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~  138 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP  138 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence            3468889999999999999999999999999988764

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.79  E-value=0.012  Score=51.14  Aligned_cols=41  Identities=20%  Similarity=0.074  Sum_probs=25.6

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      +.+++|..+.......+..+++.+...+++. -+++|++-..
T Consensus        89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~-iivvNK~D~~  129 (268)
T cd04170          89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRE  129 (268)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCccC
Confidence            4466666665555556666677777777665 4577877544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.78  E-value=0.0026  Score=54.31  Aligned_cols=49  Identities=16%  Similarity=0.195  Sum_probs=40.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      |+.++.+  ++..++.+.|.+|+|||++|.++++..++.|.+|++|.++-.
T Consensus        10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~   60 (237)
T TIGR03877        10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH   60 (237)
T ss_pred             HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence            4454432  346778899999999999999999998899999999999853

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>cd04167 Snu114p Snu114p subfamily

Probab=96.78  E-value=0.0065  Score=50.88  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      +++.|..|+||||++-+|.......++
T Consensus         3 v~iiG~~~~GKTtL~~~l~~~~~~~~~   29 (213)
T cd04167           3 VAIAGHLHHGKTSLLDMLIEQTHDLTP   29 (213)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhcCCCcc
Confidence            456699999999999999876554443

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.0022  Score=50.95  Aligned_cols=32  Identities=34%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      ++++|.+||||||++.-+|-.|.+.|++|.=+
T Consensus         8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf   39 (179)
T COG1618           8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGF   39 (179)
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence            57779999999999999999999999998744

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=96.77  E-value=0.0022  Score=59.62  Aligned_cols=50  Identities=18%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             chhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           18 SVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      .|..++. -.+..++++.|.+|+|||+++.++|..+| +.|++|++++++..
T Consensus       183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~  234 (421)
T TIGR03600       183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS  234 (421)
T ss_pred             hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3444443 23356789999999999999999999998 67999999999953

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=96.74  E-value=0.002  Score=56.13  Aligned_cols=37  Identities=35%  Similarity=0.364  Sum_probs=29.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -+++++|-+|+||||.|..|+..+.+.|++|.+|+-|
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~   38 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD   38 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            4578999999999999999999999999999999965

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.73  E-value=0.0017  Score=55.39  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=39.1

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.+........+++.|..|+|||+++..+|..+.+.|++|..+.+|.
T Consensus        36 l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         36 LQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            344433444456789999999999999999999998999999999985

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.72  E-value=0.0021  Score=53.11  Aligned_cols=37  Identities=30%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCc----EEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS----VLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k----VlliD~D~   66 (276)
                      |+.++|-+|+||||+|..|+..|.+.|..    +.++..|.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~   41 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD   41 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence            56788999999999999999999998877    77777774

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd04163 Era Era subfamily

Probab=96.70  E-value=0.038  Score=43.15  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+.+.|..|+||||+...+.      |.++..+.
T Consensus         5 ~i~~~G~~g~GKttl~~~l~------~~~~~~~~   32 (168)
T cd04163           5 FVAIVGRPNVGKSTLLNALV------GQKISIVS   32 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHh------CCceEecc
Confidence            35667999999999988875      45555443

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.68  E-value=0.007  Score=52.38  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=40.5

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCChhHHhc
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~l~~~l~   75 (276)
                      .|+.++.+  ....|.=+.|.+|+|||.++..||....-      .+.+|+.||.+-..+...+..
T Consensus        26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~   91 (256)
T PF08423_consen   26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ   91 (256)
T ss_dssp             HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred             HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence            34555543  22456656789999999999999976541      356899999998766555543

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK05595 replicative DNA helicase; Provisional

Probab=96.65  E-value=0.0029  Score=59.19  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      ..++++.|.+|+|||+++.|+|..+| +.|++|+++.+...
T Consensus       201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms  241 (444)
T PRK05595        201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS  241 (444)
T ss_pred             CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            56788999999999999999999887 57999999999854

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.63  E-value=0.014  Score=53.22  Aligned_cols=39  Identities=26%  Similarity=0.107  Sum_probs=34.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++-+.|..|+||||+...|...|.++|+||.+|=-|.
T Consensus       205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~  243 (366)
T PRK14489        205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH  243 (366)
T ss_pred             ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence            567777789999999999999999999999999997654

>PRK08506 replicative DNA helicase; Provisional

Probab=96.61  E-value=0.0033  Score=59.24  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=37.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +..++++.+.+|+|||+++.|+|...++.|++|+++.++..
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs  231 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP  231 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence            35688999999999999999999999999999999999954

>COG4240 Predicted kinase [General function prediction only]

Probab=96.60  E-value=0.0037  Score=52.48  Aligned_cols=41  Identities=29%  Similarity=0.318  Sum_probs=37.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD   65 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D   65 (276)
                      ...+-|+.+||.-|+||||+|+.+-..|+++| .+|+-+.+|
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD   88 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD   88 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence            34577889999999999999999999999998 799999999

>PRK09183 transposase/IS protein; Provisional

Probab=96.60  E-value=0.0031  Score=54.68  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ..+++.|..|+|||+++..+|..+...|++|+.+++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            345677999999999999999998889999998863

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.58  E-value=0.011  Score=55.93  Aligned_cols=48  Identities=17%  Similarity=0.099  Sum_probs=39.4

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~   66 (276)
                      ++.++.+  +..+++.+.|-+|+||||+|.+++..-+++ |.++++|.++-
T Consensus        10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE   60 (484)
T TIGR02655        10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE   60 (484)
T ss_pred             HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            4555543  346788999999999999999999887766 99999999983

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.57  E-value=0.0034  Score=53.05  Aligned_cols=37  Identities=35%  Similarity=0.518  Sum_probs=31.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA   67 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D~~   67 (276)
                      +-++|..|+||||+|..|+..+..  .+.+|.+|..|..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            556799999999999999999986  5678999999954

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF13173 AAA_14: AAA domain

Probab=96.52  E-value=0.0036  Score=48.01  Aligned_cols=40  Identities=33%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+++++.|.-||||||++.+++..+. ...+++.+|+|-..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR   41 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence            56788999999999999999998877 66789999999543

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.50  E-value=0.0032  Score=52.71  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH--------HhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL--------AEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l--------a~~G~kVlliD~D   65 (276)
                      +.+++|.+|+||||+.+.+...+        ...+++||++.--
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s   62 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS   62 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCC
Confidence            67999999999999999999988        4567888877543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.49  E-value=0.0038  Score=51.62  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      |+.++|..|+||||++..|+..+  .+.++.++..|.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~   35 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS   35 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence            35778999999999999999888  566899999994

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06749 replicative DNA helicase; Provisional

Probab=96.49  E-value=0.0038  Score=58.03  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=37.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +..++++.+.+|+|||+++.|+|...|+.|++|+++.++..
T Consensus       185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs  225 (428)
T PRK06749        185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS  225 (428)
T ss_pred             CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence            35678899999999999999999999999999999999964

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.48  E-value=0.0034  Score=56.28  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .-+++.|..|+|||.++..+|..+...|++|+.++++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~  220 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD  220 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence            5578889999999999999999999999999999874

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.48  E-value=0.0042  Score=55.17  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .+=+++.|..|+|||.++.++|..+++.|++|.++..
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~  192 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF  192 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence            3457888999999999999999999999999999876

>PRK08760 replicative DNA helicase; Provisional

Probab=96.46  E-value=0.004  Score=58.68  Aligned_cols=42  Identities=17%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~   68 (276)
                      +..++++.+.+|+|||+++.|+|...|. .|++|+++.++...
T Consensus       228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~  270 (476)
T PRK08760        228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA  270 (476)
T ss_pred             CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence            3578899999999999999999999885 59999999998643

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.46  E-value=0.0087  Score=49.20  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++++-|-.|+||||.+..|+.++...|++|..+-.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~   39 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE   39 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            568888999999999999999999999999987644

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR00665 DnaB replicative DNA helicase

Probab=96.46  E-value=0.0049  Score=57.45  Aligned_cols=41  Identities=15%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      +..+++++|.+|+|||+++.++|..++. .|++|+++.++..
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~  235 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS  235 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence            3568899999999999999999999986 6999999999964

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=96.44  E-value=0.036  Score=44.99  Aligned_cols=48  Identities=19%  Similarity=0.081  Sum_probs=34.3

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++-.....+++..+++  -.|=||||.|..+|...+-.|+||++|=.=-.
T Consensus        13 ~~~~~~~~~Gli~VYt--GdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg   60 (178)
T PRK07414         13 SLPLPYTIEGLVQVFT--SSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG   60 (178)
T ss_pred             ccccCCCCCCEEEEEe--CCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence            3433444444444443  35679999999999999999999999976543

>PRK08727 hypothetical protein; Validated

Probab=96.44  E-value=0.0051  Score=52.44  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=35.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ....+++.|+.|+|||.++..++..+.+.|++|..+.++.
T Consensus        40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~   79 (233)
T PRK08727         40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA   79 (233)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence            3455899999999999999999999999999999998753

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.44  E-value=0.0031  Score=51.06  Aligned_cols=58  Identities=26%  Similarity=0.272  Sum_probs=39.2

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ++++.+...+. .......+++++.|..|+|||++...+...+.+.+.-++-+++++..
T Consensus         7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~   64 (185)
T PF13191_consen    7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE   64 (185)
T ss_dssp             HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred             HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence            45555666666 45556678899999999999999999999999875458888888873

>COG1159 Era GTPase [General function prediction only]

Probab=96.43  E-value=0.041  Score=48.00  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l   74 (276)
                      -+-|++.|||||+--+|      .|.|+.++.-=||.+-....
T Consensus        10 aIiGrPNvGKSTLlN~l------~G~KisIvS~k~QTTR~~I~   46 (298)
T COG1159          10 AIIGRPNVGKSTLLNAL------VGQKISIVSPKPQTTRNRIR   46 (298)
T ss_pred             EEEcCCCCcHHHHHHHH------hcCceEeecCCcchhhhhee
Confidence            34589999999987665      48999999888887644443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.43  E-value=0.026  Score=49.19  Aligned_cols=41  Identities=12%  Similarity=0.051  Sum_probs=28.6

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      +.+++|.-.....-.++.+.++.+++.++++. +++|++-..
T Consensus        89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~  129 (270)
T cd01886          89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT  129 (270)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence            45666655544445566788888888898874 789988543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK08006 replicative DNA helicase; Provisional

Probab=96.42  E-value=0.005  Score=57.97  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=36.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      +..++++.+.+|+|||++|.|+|..+|. .|++|+++.+...
T Consensus       223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~  264 (471)
T PRK08006        223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP  264 (471)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            3577889999999999999999999984 6999999999954

>PF05729 NACHT: NACHT domain

Probab=96.40  E-value=0.0036  Score=49.57  Aligned_cols=29  Identities=34%  Similarity=0.534  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      |++++.|.+|+||||++..++..++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~   29 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP   29 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence            46889999999999999999999998753

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.39  E-value=0.0036  Score=50.22  Aligned_cols=33  Identities=30%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.+++.|.+|+||||+|..||..+   |  .-++|.|
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d   36 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTD   36 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEECh
Confidence            4567888999999999999999887   4  3455776

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.37  E-value=0.0056  Score=50.12  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=31.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++-|..|+||||++..|+..+...|++|..+...
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            467789999999999999999999999999776543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK06893 DNA replication initiation factor; Validated

Probab=96.37  E-value=0.0048  Score=52.41  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=34.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++..|+.|+|||+++..+|..+.++|++|..++++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            4568889999999999999999999999999999986

>PRK05642 DNA replication initiation factor; Validated

Probab=96.36  E-value=0.0048  Score=52.64  Aligned_cols=38  Identities=13%  Similarity=0.300  Sum_probs=34.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..+++.|+.|+|||.++..++..+.+.|++|+.++++-
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~   83 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE   83 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence            45788999999999999999999998899999999873

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=96.35  E-value=0.092  Score=52.73  Aligned_cols=37  Identities=14%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                      +|+|+.+.--.+..+.-.++.|+..|+++.|+|+|..
T Consensus       217 vILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~  253 (817)
T PLN02974        217 AILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDH  253 (817)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCC
Confidence            8999999999999999999999999999999999963

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.35  E-value=0.0027  Score=49.34  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=26.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++.|.+|+||||++..|+..+.     ..+||.|.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~   32 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE   32 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence            478899999999999988875544     66788875

...

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=96.32  E-value=0.0035  Score=49.84  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ++.+||++|+||||+|.-||..+.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            467899999999999999887654

>PRK08181 transposase; Validated

Probab=96.29  E-value=0.0052  Score=53.52  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -+++.|..|+|||.++..+|..+.+.|++|+.+.+
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~  142 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT  142 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence            37788999999999999999999999999999875

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.28  E-value=0.0071  Score=51.11  Aligned_cols=39  Identities=10%  Similarity=0.154  Sum_probs=35.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ...+++.|..|+|||+++..++..+...|.++..+++..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~   80 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS   80 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence            456789999999999999999999988999999999865

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.27  E-value=0.0042  Score=48.83  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=27.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |++++|.+|+||||+|..|+..+   |  ..++|.|.-.
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~   34 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH   34 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence            36788999999999999998764   3  4567888644

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK08840 replicative DNA helicase; Provisional

Probab=96.25  E-value=0.0067  Score=56.98  Aligned_cols=49  Identities=22%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      |..++.+ .+..++++.+.+|+|||+++.|+|...|. .|++|+++.+...
T Consensus       207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs  257 (464)
T PRK08840        207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP  257 (464)
T ss_pred             HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence            4444432 33577889999999999999999999984 6999999999954

>cd01884 EF_Tu EF-Tu subfamily

Probab=96.25  E-value=0.1  Score=43.17  Aligned_cols=26  Identities=31%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      +.+-|..++||||++-.|-......|
T Consensus         5 i~iiGh~~~GKTTL~~~Ll~~~~~~g   30 (195)
T cd01884           5 VGTIGHVDHGKTTLTAAITKVLAKKG   30 (195)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            45668999999999999987654444

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK06547 hypothetical protein; Provisional

Probab=96.25  E-value=0.0054  Score=49.77  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...+.++.+.|..|+||||+|..||..+   |  +.++++|
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d   47 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD   47 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence            4556777888999999999999998763   3  4566777

>PRK05748 replicative DNA helicase; Provisional

Probab=96.25  E-value=0.0063  Score=57.00  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=36.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~   68 (276)
                      +..+++++|.+|+|||+++.++|...|. .|++|+++.++...
T Consensus       202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~  244 (448)
T PRK05748        202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA  244 (448)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence            3567899999999999999999999885 59999999999643

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.25  E-value=0.0041  Score=51.60  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=29.7

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+..++++++.|.+|+||||++..+...+.  +.....||.|-
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~   51 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE   51 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence            455688899999999999999998877766  66788999994

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.23  E-value=0.11  Score=43.88  Aligned_cols=39  Identities=8%  Similarity=-0.008  Sum_probs=25.3

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      +.+++|.-.+.....+..+.+..+...++++ -+|+|++-
T Consensus       111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D  149 (224)
T cd04165         111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKID  149 (224)
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECcc
Confidence            4455555555545566677777777777775 57777764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK06904 replicative DNA helicase; Validated

Probab=96.22  E-value=0.0067  Score=57.13  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      +..++++.+.+|+|||+++.|+|...|. .|++|+++.+...
T Consensus       220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs  261 (472)
T PRK06904        220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP  261 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            3567889999999999999999999885 5999999999954

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.20  E-value=0.012  Score=45.59  Aligned_cols=45  Identities=29%  Similarity=0.305  Sum_probs=38.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcccc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF   78 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~   78 (276)
                      ++..|..|+|||+++..+|..+   +.++..+.+.......+++|.-.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~   46 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYD   46 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeee
Confidence            4567899999999999999998   88999999999888888887543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF12846 AAA_10: AAA-like domain

Probab=96.20  E-value=0.01  Score=51.81  Aligned_cols=41  Identities=37%  Similarity=0.426  Sum_probs=34.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      +++.|+.|+||||++.++...+...|.+++++  |+.+....+
T Consensus         4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~~   44 (304)
T PF12846_consen    4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSPL   44 (304)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHHH
Confidence            46779999999999999999999999999999  555554443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.20  E-value=0.0068  Score=53.32  Aligned_cols=43  Identities=30%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAH   68 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~   68 (276)
                      +.+.|+-+.|..|+||||+|..|...+.+.  +.+|.++..|...
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            446778899999999999999998888753  4589999999643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.16  E-value=0.0036  Score=47.77  Aligned_cols=46  Identities=24%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-----CCcEEEEecCCCCChhHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-----G~kVlliD~D~~~~l~~~   73 (276)
                      .+++++.|..|+|||+++.+++..+...     ..+|+.+++....+...+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF   54 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH
Confidence            4668999999999999999999999864     678888888876654433

>PRK06321 replicative DNA helicase; Provisional

Probab=96.16  E-value=0.0079  Score=56.62  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=39.5

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      |..++.+ .+..++++.+.+|+|||+++.++|..+| +.|++|+++.+...
T Consensus       216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs  266 (472)
T PRK06321        216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT  266 (472)
T ss_pred             HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            4455432 2346788999999999999999999998 46999999999964

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.15  E-value=0.063  Score=42.79  Aligned_cols=35  Identities=20%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+++|--|+||||+...+....  .|.++.++-.|.
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~   36 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF   36 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence            46788999999999999887653  488998887664

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd01894 EngA1 EngA1 subfamily

Probab=96.14  E-value=0.061  Score=41.82  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=14.7

Q ss_pred             EeCCCCchHHHHHHHHH
Q 023886           33 VGGKGGVGKTTCSSILS   49 (276)
Q Consensus        33 ~s~kGGvGKTT~a~~lA   49 (276)
                      +.|.+|+||||+...|.
T Consensus         2 l~G~~~~GKssl~~~l~   18 (157)
T cd01894           2 IVGRPNVGKSTLFNRLT   18 (157)
T ss_pred             ccCCCCCCHHHHHHHHh
Confidence            45899999999998886

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.13  E-value=0.0089  Score=49.54  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++.++.|.+|+||||+...++..+...|++|+++-.-
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT   55 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT   55 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            46678889999999999999999999999999988544

>PRK09165 replicative DNA helicase; Provisional

Probab=96.12  E-value=0.0082  Score=56.95  Aligned_cols=49  Identities=16%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC---------------CCcEEEEecCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---------------G~kVlliD~D~~   67 (276)
                      |..++.+ .+..++++.+.+|+||||++.|+|...|..               |++|+++.+...
T Consensus       207 LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs  271 (497)
T PRK09165        207 LDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS  271 (497)
T ss_pred             HhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence            4444432 334678899999999999999999999853               789999999964

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=96.11  E-value=0.036  Score=53.77  Aligned_cols=39  Identities=21%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++-+.|..|+||||+...|...|.++|+||..|--|.
T Consensus        10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~   48 (597)
T PRK14491         10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH   48 (597)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence            567777788999999999999999999999999998753

>cd04168 TetM_like Tet(M)-like subfamily

Probab=96.10  E-value=0.044  Score=46.82  Aligned_cols=22  Identities=23%  Similarity=0.087  Sum_probs=17.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +.+.|.+|+||||++-.|....
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~~   23 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYTS   23 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            3456899999999999887753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK06921 hypothetical protein; Provisional

Probab=96.09  E-value=0.0086  Score=52.13  Aligned_cols=37  Identities=22%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~   64 (276)
                      ..-+++.|..|+|||.++.++|..+.++ |++|+.+..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence            3446778999999999999999999988 999999885

>TIGR00436 era GTP-binding protein Era

Probab=96.06  E-value=0.053  Score=47.18  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+-|.+||||||+.-.|.      |.++..+.
T Consensus         4 ~liG~pnvGKSTLln~L~------~~~~~~vs   29 (270)
T TIGR00436         4 AILGRPNVGKSTLLNQLH------GQKISITS   29 (270)
T ss_pred             EEECCCCCCHHHHHHHHh------CCcEeecC
Confidence            344899999999988876      45655443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK08116 hypothetical protein; Validated

Probab=96.05  E-value=0.0098  Score=51.83  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .-+++.|..|+|||.+|..+|..+.++|++|++++.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~  150 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF  150 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            347888999999999999999999999999999974

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.075  Score=47.11  Aligned_cols=48  Identities=21%  Similarity=0.226  Sum_probs=37.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecCCCCChhHHhc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D~~~~l~~~l~   75 (276)
                      .|++...|.+|.|||+++-+||..|+-+    -++..+|+.....=.+.+|+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs  228 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS  228 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence            5888899999999999999999999832    34677777766655666664

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=96.03  E-value=0.023  Score=50.11  Aligned_cols=40  Identities=35%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh----CC------CcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE----VR------PSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~----~G------~kVlliD~D~~~   68 (276)
                      ..+|+.|-||+||||++..|..+|+.    .|      .+|++|.+....
T Consensus        90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r  139 (402)
T COG3598          90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR  139 (402)
T ss_pred             eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccCh
Confidence            34577799999999999999998883    25      379999888654

>PRK06217 hypothetical protein; Validated

Probab=96.03  E-value=0.0077  Score=49.21  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++.|-+|+||||+|..||..+   |..  .+|+|.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l---~~~--~~~~D~   34 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL---DIP--HLDTDD   34 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence            36778999999999999999766   443  688884

>PRK06851 hypothetical protein; Provisional

Probab=96.02  E-value=0.013  Score=53.10  Aligned_cols=41  Identities=20%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +...++.++.|.+|+||||+...++..+.++|.+|.+.=+-
T Consensus       211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~  251 (367)
T PRK06851        211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG  251 (367)
T ss_pred             cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            44578899999999999999999999999999999988543

>TIGR00235 udk uridine kinase

Probab=96.02  E-value=0.011  Score=49.43  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+...++.+.|..|+||||++..|+..+..  ..+.++..|..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            344677889999999999999999987754  45777777753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=96.01  E-value=0.014  Score=50.42  Aligned_cols=42  Identities=31%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP   66 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~   66 (276)
                      ...+-|+.+.|..||||||+|..|+..+++.+.+  |-+|-+|-
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG  122 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG  122 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence            4557788899999999999999999999998765  99999993

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.99  E-value=0.012  Score=54.03  Aligned_cols=40  Identities=23%  Similarity=0.145  Sum_probs=35.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+.|+.++|..|+||||++..|...+...|.+|..|..|-
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD  250 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD  250 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence            4677789999999999999999988887889999998884

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=95.98  E-value=0.011  Score=57.83  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .....++++.|.+|+||||+|..|+..|...|..+.++|.|.-
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~  499 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV  499 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence            3447888999999999999999999999988999999999963

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.98  E-value=0.0065  Score=45.94  Aligned_cols=22  Identities=36%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++|..|+||||+|..|+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            4788999999999999999988

...

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.95  E-value=0.013  Score=53.75  Aligned_cols=61  Identities=21%  Similarity=0.193  Sum_probs=45.0

Q ss_pred             hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q 023886            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTDPAHN   69 (276)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlliD~D~~~~   69 (276)
                      .++++.+...+...+.+.....++++|.+|+|||+++..++..+.+.+  ..+..|++....+
T Consensus        36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~   98 (394)
T PRK00411         36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT   98 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence            455566666666655544455578999999999999999999998764  6778888765433

>PRK07004 replicative DNA helicase; Provisional

Probab=95.94  E-value=0.01  Score=55.69  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~   68 (276)
                      +..++++.+.+|+|||+++.++|...|. .|++|+++.+....
T Consensus       212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~  254 (460)
T PRK07004        212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG  254 (460)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence            3567889999999999999999999884 69999999999653

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=95.93  E-value=0.0085  Score=49.74  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++++.|.+|+||||+|..||..+   |..+ ++..|.
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~   37 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY   37 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence            4578999999999999999998874   5544 677773

>PRK12740 elongation factor G; Reviewed

Probab=95.91  E-value=0.04  Score=54.34  Aligned_cols=17  Identities=35%  Similarity=0.593  Sum_probs=15.0

Q ss_pred             CCCCchHHHHHHHHHHH
Q 023886           35 GKGGVGKTTCSSILSIL   51 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~   51 (276)
                      |.+|+||||++-.|...
T Consensus         2 g~~~~GKTTL~~~Ll~~   18 (668)
T PRK12740          2 GHSGAGKTTLTEAILFY   18 (668)
T ss_pred             CCCCCcHHHHHHHHHHh
Confidence            67899999999998766

>PRK05636 replicative DNA helicase; Provisional

Probab=95.90  E-value=0.012  Score=55.83  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      |..+..+ .+..++++.+.+|+|||+++.++|...| +.|++|+++.+...
T Consensus       255 LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs  305 (505)
T PRK05636        255 LDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS  305 (505)
T ss_pred             HhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence            4444432 3457788999999999999999999888 46899999999864

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.90  E-value=0.013  Score=44.51  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=26.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||++..+|..+   |..++-+|+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~   32 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS   32 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence            3577999999999999999887   5666666665

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.90  E-value=0.016  Score=51.08  Aligned_cols=41  Identities=29%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +...+.+.++++.|..|+||||+|..||..|   |..+ +|..|.
T Consensus        86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi~~D~  126 (301)
T PRK04220         86 IRKSKEPIIILIGGASGVGTSTIAFELASRL---GIRS-VIGTDS  126 (301)
T ss_pred             HhcCCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCE-EEechH
Confidence            3333455678899999999999999999887   5553 577884

>PLN02796 D-glycerate 3-kinase

Probab=95.88  E-value=0.013  Score=52.53  Aligned_cols=40  Identities=23%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+.++.++|..|+||||++..|+..+...|.++..|..|-
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd  138 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD  138 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence            4566788899999999999999999988888898888883

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=95.84  E-value=0.018  Score=49.95  Aligned_cols=44  Identities=27%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      ++..|..|+|||++|..+|..   .|.++..+.+++....++++|..
T Consensus        24 vLL~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~   67 (262)
T TIGR02640        24 VHLRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY   67 (262)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence            456799999999999999873   48999999999877767777643

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.81  E-value=0.011  Score=51.56  Aligned_cols=46  Identities=26%  Similarity=0.316  Sum_probs=35.0

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCC-C-cEEEEecCCCCChh
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-P-SVLIISTDPAHNLS   71 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~-kVlliD~D~~~~l~   71 (276)
                      .+.+++.+.|-||+||||+|..++......+ + .|.-+++....+..
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~   64 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLE   64 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccc
Confidence            6788999999999999999999998755332 2 57778887665543

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.80  E-value=0.012  Score=47.61  Aligned_cols=30  Identities=33%  Similarity=0.328  Sum_probs=25.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      +|+.|++|+||||+...+...+.+.|.+|.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~   31 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG   31 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence            577899999999999999999988877764

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.78  E-value=0.0096  Score=48.98  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      |+.++|..|+||||+|..|+..+.    .+.+|..|-
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Dd   33 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDD   33 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----CCeEEcccc
Confidence            356789999999999999998762    477888883

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.77  E-value=0.0096  Score=52.51  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++++.|.+|+||||+|..|+..+.    ....+|.|.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~   36 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD   36 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence            46788999999999999999988762    467788874

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=95.68  E-value=0.018  Score=55.53  Aligned_cols=39  Identities=31%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~   66 (276)
                      ..++++.|-.|+||||+|..||..|.. .|.++.++|.|.
T Consensus       392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~  431 (568)
T PRK05537        392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV  431 (568)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH
Confidence            456777899999999999999999987 788899999994

>cd00881 GTP_translation_factor GTP translation factor family

Probab=95.66  E-value=0.11  Score=41.82  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=23.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.+.|..|+||||+.-.|.......++.....|
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~   34 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE   34 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec
Confidence            345589999999999999876554455444444

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05380 pyrG CTP synthetase; Validated

Probab=95.61  E-value=0.29  Score=46.46  Aligned_cols=44  Identities=32%  Similarity=0.457  Sum_probs=37.3

Q ss_pred             EEEE-EeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886           29 KWVF-VGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD   72 (276)
Q Consensus        29 ~i~v-~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~   72 (276)
                      +.+| +.| -.|.||=.+|+.++..|-.+|+||-.+=+||.-|..-
T Consensus         3 k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~   48 (533)
T PRK05380          3 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDP   48 (533)
T ss_pred             eEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCC
Confidence            4454 444 8899999999999999999999999999999877543

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=95.58  E-value=0.018  Score=51.46  Aligned_cols=38  Identities=24%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .|.|-|- .||+|||+++..|+..|.++|+||.+|.=.-
T Consensus        51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY   89 (325)
T PRK00652         51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY   89 (325)
T ss_pred             EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence            3444333 8999999999999999999999999997554

>PRK06761 hypothetical protein; Provisional

Probab=95.57  E-value=0.014  Score=51.08  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=33.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE-EecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll-iD~D~   66 (276)
                      .+++++.|.+|+||||++..|+..+...|.+|-. .+.|+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~   42 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL   42 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence            3568899999999999999999999888988875 56665

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.54  E-value=0.15  Score=47.40  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=16.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +|+++ |++||||||+...|.
T Consensus         3 ~I~iv-G~~~vGKStL~n~l~   22 (435)
T PRK00093          3 VVAIV-GRPNVGKSTLFNRLT   22 (435)
T ss_pred             EEEEE-CCCCCCHHHHHHHHh
Confidence            44444 999999999998874

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=95.54  E-value=0.019  Score=51.20  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=35.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +++++++ |.--+||||++.-|-.+..++|+|.+.+|+|++.+
T Consensus       103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~  144 (415)
T KOG2749|consen  103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG  144 (415)
T ss_pred             CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence            4566555 56789999999999999999999999999999544

>PRK08118 topology modulation protein; Reviewed

Probab=95.52  E-value=0.013  Score=47.20  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..|+..+
T Consensus         4 I~I~G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5666899999999999988664

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=95.48  E-value=0.028  Score=47.52  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=35.5

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP   66 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~   66 (276)
                      ++..++.++    +.+-|.-|.|||+++..|...+. +.|.+|+++|..-
T Consensus        17 ~~~~l~~~H----~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G   62 (229)
T PF01935_consen   17 DLNKLFNRH----IAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG   62 (229)
T ss_pred             eHHHhccce----EEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence            344455433    44558999999999999999999 8899999998763

It contains several conserved aspartates and histidines that could be metal ligands.

>PRK07933 thymidylate kinase; Validated

Probab=95.48  E-value=0.024  Score=47.65  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++-|--|+||||.+..|+..|...|++|.++..-
T Consensus         2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P   37 (213)
T PRK07933          2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP   37 (213)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            467888999999999999999999999999988653

>PRK04040 adenylate kinase; Provisional

Probab=95.47  E-value=0.02  Score=47.13  Aligned_cols=31  Identities=35%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV   59 (276)
                      ++++++.|.+|+||||++..|+..+. .|.++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~   32 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI   32 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence            46788899999999999999998885 24444

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=95.42  E-value=0.16  Score=47.20  Aligned_cols=41  Identities=29%  Similarity=0.359  Sum_probs=35.5

Q ss_pred             EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .++.| -.|.||-.+|+.||..|..+|++|-++=+||.-|..
T Consensus         5 fVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvD   46 (533)
T COG0504           5 FVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVD   46 (533)
T ss_pred             EEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecC
Confidence            34444 789999999999999999999999999999987654

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.41  E-value=0.017  Score=53.15  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=26.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      ++++|.+|.||||+|++||..++.+|+=|=
T Consensus       266 ILIAG~PGaGKsTFaqAlAefy~~~GkiVK  295 (604)
T COG1855         266 ILIAGAPGAGKSTFAQALAEFYASQGKIVK  295 (604)
T ss_pred             eEEecCCCCChhHHHHHHHHHHHhcCcEEe
Confidence            677899999999999999999999998433

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=95.40  E-value=0.12  Score=42.12  Aligned_cols=30  Identities=23%  Similarity=0.118  Sum_probs=26.3

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -.|=||||-|..+|....-.|+||++|=.=
T Consensus        36 G~GKGKTTAAlG~alRa~GhG~rv~vvQFi   65 (198)
T COG2109          36 GNGKGKTTAALGLALRALGHGLRVGVVQFI   65 (198)
T ss_pred             cCCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence            457899999999999999999999998654

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.38  E-value=0.097  Score=42.54  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.+++|=-|+||||+-.++.. ....|.|+.+|-.|..
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g   38 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG   38 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence            568889999999999999998 6678999999999876

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.37  E-value=0.015  Score=46.30  Aligned_cols=32  Identities=34%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ++.|..|+||||+|..|+..+   |  ..++|.|.-.
T Consensus         2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~~   33 (163)
T TIGR01313         2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDLH   33 (163)
T ss_pred             EEECCCCCCHHHHHHHHHHhc---C--CeEEeCcccc
Confidence            567999999999999999876   3  4567888643

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG2403 Predicted GTPase [General function prediction only]

Probab=95.36  E-value=0.03  Score=50.25  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ..|..+.++ ..++.-..+.|.++...-|+|||+++.-+|..|.++|+||++|-.
T Consensus       110 A~f~~~gP~-et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh  163 (449)
T COG2403         110 ADFKELGPK-ETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH  163 (449)
T ss_pred             ceeEEeCcc-HHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence            344444443 333334456778888888999999999999999999999999977

>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []

Probab=95.36  E-value=0.16  Score=43.70  Aligned_cols=42  Identities=29%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886           31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD   72 (276)
Q Consensus        31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~   72 (276)
                      .++.| -.|.||=.+|+.+|..|..+|+||.++=+||.-|..-
T Consensus         5 fVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~   47 (276)
T PF06418_consen    5 FVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDP   47 (276)
T ss_dssp             EEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSC
T ss_pred             EEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCC
Confidence            35555 8899999999999999999999999999999877543

The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.

>PTZ00301 uridine kinase; Provisional

Probab=95.36  E-value=0.036  Score=46.49  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-CCC-cEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRP-SVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~-kVlliD~D~   66 (276)
                      ..|+-++|-+|+||||+|..|+..+.+ .|- .|.++-.|-
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~   43 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF   43 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            356788999999999999999988854 353 566888884

>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2

Probab=95.32  E-value=0.045  Score=44.32  Aligned_cols=31  Identities=32%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             CCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           37 GGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        37 GGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|=||||-|..+|...+-.|+||+++=.=-.
T Consensus        12 ~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg   42 (172)
T PF02572_consen   12 DGKGKTTAALGLALRAAGHGMRVLIVQFLKG   42 (172)
T ss_dssp             SSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred             CCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence            4668999999999999999999999976544

5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=95.32  E-value=0.02  Score=46.01  Aligned_cols=26  Identities=38%  Similarity=0.604  Sum_probs=20.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      +.+.|.+||||||+|-.|+    +.|+++.
T Consensus         3 I~ITGTPGvGKTT~~~~L~----~lg~~~i   28 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR----ELGYKVI   28 (180)
T ss_pred             EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence            5667999999999998887    4566554

>PRK15494 era GTPase Era; Provisional

Probab=95.29  E-value=0.17  Score=45.63  Aligned_cols=19  Identities=26%  Similarity=0.317  Sum_probs=15.3

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +++-|.+||||||+.-.|.
T Consensus        55 V~ivG~~nvGKSTLin~l~   73 (339)
T PRK15494         55 VCIIGRPNSGKSTLLNRII   73 (339)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            3555899999999987774

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.27  E-value=0.03  Score=50.74  Aligned_cols=59  Identities=25%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC----C--CcEEEEecCCC
Q 023886            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV----R--PSVLIISTDPA   67 (276)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~----G--~kVlliD~D~~   67 (276)
                      .++++.+...+...+.+.....++++|.+|+|||+++..++..+.+.    |  .+++.|++...
T Consensus        21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928        21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence            45566666666665555445568899999999999999999988643    1  35777777543

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.25  E-value=0.028  Score=47.06  Aligned_cols=38  Identities=34%  Similarity=0.369  Sum_probs=32.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..|+-++|-+|+||||+|..|...|...  +|.+|-.|..
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y   45 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY   45 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence            3566788999999999999999888755  8999999954

>PRK13947 shikimate kinase; Provisional

Probab=95.24  E-value=0.028  Score=45.12  Aligned_cols=31  Identities=32%  Similarity=0.359  Sum_probs=25.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++.|-+|+||||++..||..|   |.+  ++|.|.
T Consensus         4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~   34 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK   34 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence            6778999999999999998776   554  477774

>TIGR00376 DNA helicase, putative

Probab=95.24  E-value=0.027  Score=55.05  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .++++.|.+|+||||+.+.+...+.+.|++||+..
T Consensus       174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a  208 (637)
T TIGR00376       174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA  208 (637)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            46789999999999999999999999999999986

The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.24  E-value=0.017  Score=44.91  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      |++++|..|+||||+|..||..+   |.  -++|.|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~---~~--~~~~~~   31 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL---GL--PYLDTG   31 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CC--ceeccc
Confidence            46889999999999999999765   43  356666

>PRK13946 shikimate kinase; Provisional

Probab=95.19  E-value=0.025  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+++.|-.|+||||++..||..|   |..  .+|.|.
T Consensus        11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D~   43 (184)
T PRK13946         11 RTVVLVGLMGAGKSTVGRRLATML---GLP--FLDADT   43 (184)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence            457888999999999999999887   555  578883

>TIGR00101 ureG urease accessory protein UreG

Probab=95.16  E-value=0.17  Score=41.99  Aligned_cols=38  Identities=26%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.+.|..|+||||+...+...+... .++.++..|....
T Consensus         4 i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~   41 (199)
T TIGR00101         4 IGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQ   41 (199)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCCh
Confidence            4566999999999999999877654 5688888887543

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PLN02924 thymidylate kinase

Probab=95.15  E-value=0.041  Score=46.51  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +..++++=|-.|+||||.+..|+..|...|++|.++.
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~   51 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR   51 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence            3566788899999999999999999999999987664

>PRK03839 putative kinase; Provisional

Probab=95.14  E-value=0.026  Score=45.85  Aligned_cols=30  Identities=33%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|-+|+||||++..||..+   |.  -.+|+|
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~---~~--~~id~d   32 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKL---GY--EYVDLT   32 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence            6777999999999999888776   33  446766

>PRK00698 tmk thymidylate kinase; Validated

Probab=95.12  E-value=0.043  Score=45.26  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      +++++-|--|+||||++..|+..+...|+.|...
T Consensus         4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~   37 (205)
T PRK00698          4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT   37 (205)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence            5678889999999999999999999889776654

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.10  E-value=0.022  Score=42.26  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhC
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEV   55 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~   55 (276)
                      ++.|.+|+|||++|..||..+.+.
T Consensus         2 ~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    2 WIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            577999999999999999999865

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PLN02327 CTP synthase

Probab=95.10  E-value=0.61  Score=44.49  Aligned_cols=43  Identities=30%  Similarity=0.447  Sum_probs=36.7

Q ss_pred             EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      .++.| -.|.||=.+|+.++..|..+|++|-.+=.||.-|..-.
T Consensus         5 fvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~G   48 (557)
T PLN02327          5 LVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAG   48 (557)
T ss_pred             EEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCC
Confidence            34444 78999999999999999999999999999998775433

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.08  E-value=0.023  Score=46.03  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++++|-+|+||||+|..|+..+
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            578999999999999999998765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd04169 RF3 RF3 subfamily

Probab=95.08  E-value=0.2  Score=43.60  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      |-+.+.|.+|+||||++-.|....
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~   26 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFG   26 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhc
Confidence            346677999999999999887653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK00049 elongation factor Tu; Reviewed

Probab=95.07  E-value=0.31  Score=44.91  Aligned_cols=26  Identities=31%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      +.+.|..+.||||++-.|.....+.|
T Consensus        15 i~iiGhvd~GKSTL~~~L~~~~~~~g   40 (396)
T PRK00049         15 VGTIGHVDHGKTTLTAAITKVLAKKG   40 (396)
T ss_pred             EEEEeECCCCHHHHHHHHHHhhhhcc
Confidence            46668999999999999987665544

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=95.05  E-value=0.025  Score=48.24  Aligned_cols=36  Identities=36%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+.|+++.|..||||||+|.-+|..|.   -+ -+|..|
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLg---I~-~visTD  122 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLG---IR-SVISTD  122 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcC---Cc-eeecch
Confidence            3478889999999999999999987654   32 246666

>TIGR00337 PyrG CTP synthase

Probab=94.97  E-value=0.67  Score=44.05  Aligned_cols=43  Identities=28%  Similarity=0.388  Sum_probs=36.7

Q ss_pred             EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      .++.| -.|.||=.+|+.++..|..+|+||-.+=.||.-|..-.
T Consensus         5 ~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~G   48 (525)
T TIGR00337         5 FVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPG   48 (525)
T ss_pred             EEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCC
Confidence            34444 78999999999999999999999999999998775433

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=94.97  E-value=0.042  Score=48.89  Aligned_cols=38  Identities=26%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.|+|-|- -||.|||.++.-||..|.++|++|.+|.=.
T Consensus        29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG   67 (311)
T TIGR00682        29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG   67 (311)
T ss_pred             CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence            44555555 699999999999999999999999999754

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=94.96  E-value=0.074  Score=43.88  Aligned_cols=29  Identities=31%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhccCCCcEEEEcCCCchhH
Q 023886          126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHT  155 (276)
Q Consensus       126 ~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~  155 (276)
                      ....+.+++..+-. .|.|||+|.|=-+.+
T Consensus        92 r~em~ke~~~~~l~-G~r~ivlDiPLLFE~  120 (225)
T KOG3220|consen   92 RKEMFKEILKLLLR-GYRVIVLDIPLLFEA  120 (225)
T ss_pred             HHHHHHHHHHHHhc-CCeEEEEechHHHHH
Confidence            44577888888886 899999999975554

>PRK07261 topology modulation protein; Provisional

Probab=94.91  E-value=0.033  Score=45.02  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=18.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..|+..+
T Consensus         3 i~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          3 IAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            4566899999999999987654

>PRK06851 hypothetical protein; Provisional

Probab=94.90  E-value=0.061  Score=48.87  Aligned_cols=42  Identities=21%  Similarity=0.239  Sum_probs=35.6

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE--ecCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII--STDP   66 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli--D~D~   66 (276)
                      ....++.+++|.+|+||||+...++..+.+.|++|-.+  ..||
T Consensus        27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~   70 (367)
T PRK06851         27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN   70 (367)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            34578899999999999999999999999999987766  4553

>PLN02200 adenylate kinase family protein

Probab=94.90  E-value=0.031  Score=47.72  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=22.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+.++++.|.+|+||||+|..||..+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999998755

>PRK07773 replicative DNA helicase; Validated

Probab=94.88  E-value=0.037  Score=56.28  Aligned_cols=40  Identities=25%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      ..++++.|.+|+|||++|.|+|...|.. |++|+++.++..
T Consensus       217 G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms  257 (886)
T PRK07773        217 GQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS  257 (886)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            4678899999999999999999999864 899999999964

>PLN02348 phosphoribulokinase

Probab=94.86  E-value=0.057  Score=49.32  Aligned_cols=43  Identities=21%  Similarity=0.285  Sum_probs=34.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCC---------------CcEEEEecCCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR---------------PSVLIISTDPAH   68 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G---------------~kVlliD~D~~~   68 (276)
                      +.+.|+-+.|-.|+||||+|..|+..|...+               ..|.+|-+|-.+
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            3456678999999999999999999997542               478899998554

>PLN03127 Elongation factor Tu; Provisional

Probab=94.78  E-value=0.54  Score=44.07  Aligned_cols=33  Identities=27%  Similarity=0.154  Sum_probs=23.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      .++..-+.+.|.-+.||||++-.|....++.|+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~   90 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGK   90 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhc
Confidence            344444677799999999999999765554443

>PRK13948 shikimate kinase; Provisional

Probab=94.76  E-value=0.048  Score=44.68  Aligned_cols=33  Identities=36%  Similarity=0.460  Sum_probs=26.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++..|-.|+||||++..||..|   |..  +||+|
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D   42 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD   42 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence            4557788999999999999998776   554  45999

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=94.75  E-value=0.046  Score=49.19  Aligned_cols=39  Identities=23%  Similarity=0.092  Sum_probs=32.0

Q ss_pred             EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|+|-|- -||+|||-++..||..|.++|++|.+|.=.-.
T Consensus        58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg   97 (338)
T PRK01906         58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG   97 (338)
T ss_pred             EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence            3334443 99999999999999999999999999975543

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.74  E-value=0.038  Score=44.36  Aligned_cols=32  Identities=34%  Similarity=0.401  Sum_probs=25.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++.|-.|+||||++..||..+   |.  .++|.|.
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D~   35 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQAL---GY--RFVDTDQ   35 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CC--CEEEccH
Confidence            35667999999999999999776   44  4578883

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=94.71  E-value=0.039  Score=51.61  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .-+++.|..|+|||+++..+|..+.+.|.+|+.++++
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            4467789999999999999999999899999999876

>PRK13973 thymidylate kinase; Provisional

Probab=94.70  E-value=0.063  Score=45.00  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      +++++=|--|+||||.+..|+..|...|++|...
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~   37 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT   37 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4567789999999999999999999999999766

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=94.65  E-value=0.062  Score=50.83  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             cCCceEEE-EEeC---CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           24 EQDSLKWV-FVGG---KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        24 ~~~~~~i~-v~s~---kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +++.-+.+ |++-   +-|+||||++..|+.+|++.|+++.+.=  .|+++.-.||.+
T Consensus        50 ~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~K  105 (557)
T PF01268_consen   50 DKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIK  105 (557)
T ss_dssp             TS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST
T ss_pred             ccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCcc
Confidence            34344444 4433   7799999999999999999999987643  455666667665

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>PRK12338 hypothetical protein; Provisional

Probab=94.63  E-value=0.034  Score=49.49  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=27.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+++++|.+|+||||+|..||..+   |.+ .+++.|.
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD~   38 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETDF   38 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccChH
Confidence            4678999999999999999999876   443 3567773

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=94.60  E-value=0.042  Score=54.60  Aligned_cols=40  Identities=18%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|.-.......++..++..+.+.++++. +++|++-.
T Consensus       111 D~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~  150 (720)
T TIGR00490       111 DGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR  150 (720)
T ss_pred             CEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence            55666665544445567778888878888875 99998854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=94.60  E-value=0.057  Score=40.65  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=27.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD   63 (276)
                      +++.+..|+|||+++..++..+...  +++++++-
T Consensus         3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~   37 (144)
T cd00046           3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA   37 (144)
T ss_pred             EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence            5778999999999999999999874  46777774

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.56  E-value=0.029  Score=45.52  Aligned_cols=31  Identities=29%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|.+|+||||+|..||..+   |  +..|+.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~   31 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAG   31 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECC
Confidence            36788999999999999998765   3  4556654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13808 adenylate kinase; Provisional

Probab=94.51  E-value=1.1  Score=40.30  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||++..||..+
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~y   24 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQY   24 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4557889999999999998654

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=94.47  E-value=0.057  Score=43.65  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=28.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +++.|..|+|||++|..++..   .|.++++++....
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~   35 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA   35 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc
Confidence            678899999999999999865   6789999966543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.46  E-value=0.043  Score=44.59  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..++++.|.+|+||||++..||..+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567788999999999999999765

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=94.46  E-value=0.038  Score=50.35  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .....+|++|.||+|||++...+-..+...|++|++.-
T Consensus        20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a   57 (364)
T PF05970_consen   20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTA   57 (364)
T ss_pred             cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEec
Confidence            33456799999999999999999999988888887653

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK14528 adenylate kinase; Provisional

Probab=94.43  E-value=0.055  Score=44.37  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++.|.+|+||||+|..||..+
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46778999999999999988665

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=94.42  E-value=0.058  Score=44.97  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLII   62 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlli   62 (276)
                      ..++++.|+.|+|||++|...|..+...|.  |+.++
T Consensus        19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~   55 (205)
T PF02562_consen   19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT   55 (205)
T ss_dssp             -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            447899999999999999999998887664  55554

; GO: 0005524 ATP binding; PDB: 3B85_A.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=94.41  E-value=0.036  Score=43.56  Aligned_cols=20  Identities=35%  Similarity=0.546  Sum_probs=17.1

Q ss_pred             EEEeCCCCchHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +++.|.+|+||||++..+|.
T Consensus        10 ILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen   10 ILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             EEEeCCCCCCchhHHHHHHH
Confidence            45668999999999999984

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=94.39  E-value=0.17  Score=45.15  Aligned_cols=41  Identities=22%  Similarity=0.080  Sum_probs=34.3

Q ss_pred             eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +.|+|-|- -||.|||-++..||..|.++|.|+.++.=.-.+
T Consensus        48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg   89 (336)
T COG1663          48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG   89 (336)
T ss_pred             CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence            34445444 899999999999999999999999999877555

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=94.36  E-value=0.06  Score=48.24  Aligned_cols=39  Identities=26%  Similarity=0.095  Sum_probs=32.3

Q ss_pred             eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.|.|-|- -||+|||-++..|+..|.++|++|.+|.=.-
T Consensus        36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY   75 (326)
T PF02606_consen   36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY   75 (326)
T ss_pred             cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence            34445444 8999999999999999999999999997653

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=94.36  E-value=0.052  Score=50.11  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D   65 (276)
                      ..+++.|..|+|||+++..+|..+.+.  |.+|+.++++
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~  175 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE  175 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence            457889999999999999999999876  7899999875

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PLN03025 replication factor C subunit; Provisional

Probab=94.32  E-value=0.05  Score=48.60  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=32.8

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.+.......-+++.|.+|+||||+|..+|..+-..+++..+++.++
T Consensus        25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~   72 (319)
T PLN03025         25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA   72 (319)
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence            444444433333567999999999999999999876555444455543

>PRK01184 hypothetical protein; Provisional

Probab=94.30  E-value=0.056  Score=43.97  Aligned_cols=32  Identities=28%  Similarity=0.309  Sum_probs=22.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|.+|+||||++. +   +.+.|..+  +|+|
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~~   32 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVMG   32 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEhh
Confidence            3568889999999999864 3   34567655  5553

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.28  E-value=0.095  Score=43.42  Aligned_cols=35  Identities=26%  Similarity=0.353  Sum_probs=27.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~   64 (276)
                      +++++|..|+||||+...++..+... +.+++.++-
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~   38 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED   38 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence            46788999999999999998888754 445555543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PLN03126 Elongation factor Tu; Provisional

Probab=94.24  E-value=0.62  Score=44.08  Aligned_cols=29  Identities=28%  Similarity=0.219  Sum_probs=22.6

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .++..-+.+.|..++||||++-.|...+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~  106 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALA  106 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            44455567889999999999999986654

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.22  E-value=0.094  Score=42.47  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      ...+++.|..|||||.+|..||..+- ....+.+.+|+-..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~   43 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY   43 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence            44567889999999999999999998 67778888898753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>CHL00071 tufA elongation factor Tu

Probab=94.22  E-value=0.95  Score=41.91  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .-+.+.|..++||||+.-.|...+.
T Consensus        13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~   37 (409)
T CHL00071         13 VNIGTIGHVDHGKTTLTAAITMTLA   37 (409)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3356779999999999998876543

>PRK10536 hypothetical protein; Provisional

Probab=94.21  E-value=0.11  Score=44.71  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=34.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhcccc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRF   78 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~~   78 (276)
                      .++++.|..|+|||++|..+|...- ...++.++| ..|.-.....+|.-+
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LGfLP  124 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLGFLP  124 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhCcCC
Confidence            4789999999999999999999644 434555555 355555555555443

>PRK14527 adenylate kinase; Provisional

Probab=94.20  E-value=0.054  Score=44.51  Aligned_cols=26  Identities=35%  Similarity=0.271  Sum_probs=22.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ...++++.|.+|+||||+|..||..+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678888999999999999998766

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=94.18  E-value=0.056  Score=48.01  Aligned_cols=34  Identities=32%  Similarity=0.288  Sum_probs=28.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++++++|..|+|||++|..||..+     .+.+|.+|.
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds   37 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS   37 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence            4678999999999999999999765     355788884

>smart00763 AAA_PrkA PrkA AAA domain

Probab=94.10  E-value=0.046  Score=49.39  Aligned_cols=29  Identities=24%  Similarity=0.286  Sum_probs=26.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ..++++...|.+|+||||+|..||..|..
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34688899999999999999999999976

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=94.01  E-value=0.08  Score=43.81  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.+.|..|+||||++..|+..+   |..|  +|+|
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~--i~~D   33 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI--LDAD   33 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh---CCeE--eeCc
Confidence            357788999999999998877532   6554  5888

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.00  E-value=0.064  Score=42.01  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=24.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|.+|+||||+|..||..+   |..  .+|.|
T Consensus         2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d   31 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD   31 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence            5677999999999999999877   544  45777

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=93.97  E-value=0.074  Score=46.75  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=28.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~   64 (276)
                      -+++.|.+|+||||+|..+|..+.+.|.    .+..++.
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~   98 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR   98 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence            3677799999999999999999988765    3555554

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00181 cbbX CbbX; Provisional

Probab=93.97  E-value=0.075  Score=46.80  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~   64 (276)
                      +++.|.+|+||||+|..+|..+...|.    .++-++.
T Consensus        62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~   99 (287)
T CHL00181         62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR   99 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence            567799999999999999999887665    3555553

>TIGR00503 prfC peptide chain release factor 3

Probab=93.94  E-value=0.44  Score=45.64  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=18.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      .+-+.+-|.+|+||||++-.|...
T Consensus        11 ~RniaiiGh~~aGKTTL~e~Ll~~   34 (527)
T TIGR00503        11 RRTFAIISHPDAGKTTITEKVLLY   34 (527)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHh
Confidence            344566689999999999988653

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=93.93  E-value=0.033  Score=47.15  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++-+..+.++-=++++|.+|+||||....||..|--..+|=.+++++
T Consensus        39 l~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN   85 (333)
T KOG0991|consen   39 LSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN   85 (333)
T ss_pred             HHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence            34444455555678899999999999999999987655665555555

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=93.93  E-value=0.098  Score=46.71  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +++.|.+|+||||++..+|..+   |.+..-|.+++.-...+++|..
T Consensus        67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~  110 (327)
T TIGR01650        67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD  110 (327)
T ss_pred             EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence            6678999999999999999877   5778888999887777788754

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=93.90  E-value=0.061  Score=48.89  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=23.6

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~   50 (276)
                      |+++++.....=+++.|.+|+||||+|.-+|.
T Consensus        39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~   70 (436)
T COG2256          39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAG   70 (436)
T ss_pred             HHHHHhcCCCceeEEECCCCCCHHHHHHHHHH
Confidence            34444444445567889999999999999984

>PRK12735 elongation factor Tu; Reviewed

Probab=93.90  E-value=1.4  Score=40.71  Aligned_cols=24  Identities=33%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      +.+-|..++||||++-.|-.....
T Consensus        15 i~iiGhvd~GKSTL~~~L~~~~~~   38 (396)
T PRK12735         15 VGTIGHVDHGKTTLTAAITKVLAK   38 (396)
T ss_pred             EEEECcCCCCHHHHHHHHHHhhhh
Confidence            567799999999999998765443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=93.86  E-value=0.13  Score=52.19  Aligned_cols=51  Identities=27%  Similarity=0.285  Sum_probs=37.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC---CCChhHHhcccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQQRF   78 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~---~~~l~~~l~~~~   78 (276)
                      .-++++.|..|||||.+|..||..|-..+..+.-+|+..   .++.+.++|..+
T Consensus       596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~  649 (852)
T TIGR03345       596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPP  649 (852)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCC
Confidence            345678899999999999999999876666788888653   344555555443

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK00625 shikimate kinase; Provisional

Probab=93.83  E-value=0.065  Score=43.49  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=24.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|-+|+||||++..||..+   |.+  .+|+|
T Consensus         3 I~LiG~pGsGKTT~~k~La~~l---~~~--~id~D   32 (173)
T PRK00625          3 IFLCGLPTVGKTSFGKALAKFL---SLP--FFDTD   32 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCC--EEEhh
Confidence            6778999999999999998776   433  47877

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=93.82  E-value=0.066  Score=47.81  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=33.0

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEEecC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTD   65 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlliD~D   65 (276)
                      +.+.+..+....+++.|..|+||||+|..+|..+...+  .++..+++.
T Consensus        27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~   75 (337)
T PRK12402         27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA   75 (337)
T ss_pred             HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence            44444444333467899999999999999999887543  356666653

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=93.82  E-value=0.075  Score=49.84  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D   65 (276)
                      .-+++.|..|+|||+++..+|..+.+.  |.+|+.+.++
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~  187 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE  187 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            457889999999999999999999887  7899999886

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=93.81  E-value=0.072  Score=42.45  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=16.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +++.|-.|+||||++..|+..
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            456789999999999999976

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=93.79  E-value=0.085  Score=49.89  Aligned_cols=40  Identities=18%  Similarity=0.013  Sum_probs=30.6

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      .-|+||||++..|+.+|.+.|+|+.+.==.  +++.-.||.+
T Consensus        75 P~GEGKtTttIGL~~aL~~lgk~~~~~lRe--PSlGP~FGiK  114 (587)
T PRK13507         75 PLGEGKSTTTMGLVQGLGKRGKKVSGAIRQ--PSGGPTMNIK  114 (587)
T ss_pred             CCCCCccchhhhHHHHHHhhcCceEEEEec--CCcCCcCCcc
Confidence            679999999999999999999998865433  3344444443

>PRK12739 elongation factor G; Reviewed

Probab=93.77  E-value=0.44  Score=47.24  Aligned_cols=41  Identities=12%  Similarity=0.030  Sum_probs=28.3

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      +.+++|.-.....-.+++.++..+.+.+++.. +++|++-..
T Consensus        98 D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~  138 (691)
T PRK12739         98 DGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI  138 (691)
T ss_pred             CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence            44566555544445566788888888888875 889988544

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=93.75  E-value=0.07  Score=46.16  Aligned_cols=26  Identities=38%  Similarity=0.604  Sum_probs=22.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      +++.|.+|+||||+|..+|..+.+.|
T Consensus        45 vll~GppGtGKTtlA~~ia~~l~~~~   70 (261)
T TIGR02881        45 MIFKGNPGTGKTTVARILGKLFKEMN   70 (261)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            56789999999999999999987655

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK09866 hypothetical protein; Provisional

Probab=93.72  E-value=0.44  Score=46.35  Aligned_cols=41  Identities=10%  Similarity=0.042  Sum_probs=24.6

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCC-CcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEI-DTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~-~~~g~vvN~~~~  265 (276)
                      +.+++|.-.....-.+-..+.+.+++.+- ...-+|+|++-.
T Consensus       260 DvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl  301 (741)
T PRK09866        260 SAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence            55666666654333333567777777664 234678888854

>PRK08356 hypothetical protein; Provisional

Probab=93.71  E-value=0.11  Score=42.90  Aligned_cols=26  Identities=35%  Similarity=0.225  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      .+++++|++|+||||+|-.|+    +.|..
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~   31 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE----EKGFC   31 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence            467889999999999998884    35766

>CHL00095 clpC Clp protease ATP binding subunit

Probab=93.70  E-value=0.17  Score=51.22  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=35.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhcc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQ   76 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~   76 (276)
                      ..++.|..|||||++|..||..+-..+..+.-+|+...   ++.+.++|.
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~  590 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS  590 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence            34678999999999999999988766667777887632   445555554

>PRK12736 elongation factor Tu; Reviewed

Probab=93.69  E-value=0.86  Score=41.97  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +.+.|..+.||||++-.|....
T Consensus        15 i~i~Ghvd~GKSTL~~~L~~~~   36 (394)
T PRK12736         15 IGTIGHVDHGKTTLTAAITKVL   36 (394)
T ss_pred             EEEEccCCCcHHHHHHHHHhhh
Confidence            5667999999999999887443

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=93.69  E-value=0.054  Score=41.95  Aligned_cols=42  Identities=26%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ++...+-..+.+.+  ++..+++..|.-|+||||++..++..+.
T Consensus         6 ~~t~~l~~~l~~~l--~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150         6 KAMDKFGKAFAKPL--DFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             HHHHHHHHHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34444444455444  2345788999999999999999998874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK13764 ATPase; Provisional

Probab=93.66  E-value=0.098  Score=50.60  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .-++++|..|+||||++.+|+..+...|+.|.-++
T Consensus       258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE  292 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME  292 (602)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence            44788999999999999999999998888776665

>PRK14531 adenylate kinase; Provisional

Probab=93.62  E-value=0.08  Score=43.20  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++.|.+|+||||++..||..+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36778999999999999998875

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=93.61  E-value=0.085  Score=49.35  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D   65 (276)
                      -+++.|..|+|||.++..+|..+.+.  +.+|+.++++
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~  169 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence            47889999999999999999999875  6799999875

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=93.59  E-value=0.086  Score=42.86  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=24.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++.+.|..|+||||++.-|+.    .|..  +||+|
T Consensus         1 ii~itG~~gsGKst~~~~l~~----~g~~--~i~~D   30 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE----LGIP--VIDAD   30 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH----CCCC--EEecC
Confidence            367789999999999988876    5654  57888

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=93.56  E-value=0.28  Score=48.90  Aligned_cols=45  Identities=22%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhccc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQR   77 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~~   77 (276)
                      ..++.|..|||||++|..||..+   +.++.-+|+...   +..+.++|..
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~  533 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAP  533 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCC
Confidence            45788999999999999999987   677888887642   4456666554

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=93.56  E-value=0.12  Score=47.90  Aligned_cols=49  Identities=22%  Similarity=0.282  Sum_probs=38.1

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      |.++..+ .+..++++.+.+|.|||++|.|+|..+|.. ++.|+++.+...
T Consensus       186 LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~  236 (435)
T COG0305         186 LDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMS  236 (435)
T ss_pred             hHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCC
Confidence            4444332 334677888999999999999999999974 667999998854

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.54  E-value=0.3  Score=46.22  Aligned_cols=36  Identities=36%  Similarity=0.593  Sum_probs=26.4

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .+++.+.. +-..-.+++|..|+||||+|..+|.++-
T Consensus        24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN   60 (491)
T ss_pred             HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence            34444433 3344568899999999999999998774

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.53  E-value=0.085  Score=43.09  Aligned_cols=30  Identities=30%  Similarity=0.293  Sum_probs=23.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|.+|+||||+|..||..+   |  +..++.|
T Consensus         2 I~i~G~pGsGKst~a~~La~~~---~--~~~i~~~   31 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY---G--LPHISTG   31 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence            5677899999999999998764   4  4456665

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PLN02759 Formate--tetrahydrofolate ligase

Probab=93.53  E-value=0.1  Score=49.73  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=30.8

Q ss_pred             CCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      .-|+||||++..|+.+|.+ .|+++++.==  ++++.-.||.+
T Consensus        81 P~GEGKTTttIGL~~aL~~~lgk~~~~~lR--ePSlGP~FGiK  121 (637)
T PLN02759         81 PLGEGKSTTTIGLCQALGAYLDKKVVTCLR--QPSQGPTFGIK  121 (637)
T ss_pred             CCCCCchhHHHHHHHHHHHHhCCeeEEEee--cCCcCCcCCcc
Confidence            7799999999999999997 8999887543  34444445544

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=93.52  E-value=0.11  Score=46.12  Aligned_cols=35  Identities=37%  Similarity=0.421  Sum_probs=29.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD   63 (276)
                      +-++++|..|+||||+...|...+.+.  +.|++.|+
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE  169 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE  169 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence            456789999999999999999888764  67888886

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=93.50  E-value=0.099  Score=45.35  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ...++++|..|+||||+..++...+-..+.+++.|+-.+.
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E  166 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE  166 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred             ceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence            5677888999999999999998888877789998884333

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK00007 elongation factor G; Reviewed

Probab=93.50  E-value=0.51  Score=46.84  Aligned_cols=41  Identities=12%  Similarity=0.026  Sum_probs=30.8

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      +.+++|.-...-.-.++...+..+.+.+++.. +++|++-..
T Consensus       100 D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~  140 (693)
T PRK00007        100 DGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT  140 (693)
T ss_pred             CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC
Confidence            45666666655556777888999999999885 899988644

>PRK04195 replication factor C large subunit; Provisional

Probab=93.50  E-value=0.11  Score=49.29  Aligned_cols=39  Identities=23%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ...+.++++|.+|+||||+|..+|..+   |..++-+++...
T Consensus        37 ~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~   75 (482)
T PRK04195         37 KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQ   75 (482)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccc
Confidence            336778999999999999999998765   677777766543

>PRK13695 putative NTPase; Provisional

Probab=93.48  E-value=0.14  Score=41.21  Aligned_cols=30  Identities=37%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      +++.|.+|+||||+...++..+...|.++.
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~   32 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG   32 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            455689999999999999988887788764

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=93.46  E-value=0.54  Score=45.05  Aligned_cols=39  Identities=13%  Similarity=-0.038  Sum_probs=24.6

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      +.+++|.-+..-.-..+..+++.++..++|+ -+++|++-
T Consensus       104 D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D  142 (526)
T PRK00741        104 DSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLD  142 (526)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCc
Confidence            5566665554333345667777777778875 57888774

>PLN02165 adenylate isopentenyltransferase

Probab=93.45  E-value=0.068  Score=47.83  Aligned_cols=38  Identities=29%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+....++++.|..|+||||+|..||..+.     .-+|++|.
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs   76 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK   76 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence            344456788889999999999999987753     24778873

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=93.40  E-value=0.092  Score=49.00  Aligned_cols=37  Identities=38%  Similarity=0.499  Sum_probs=29.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+.++++.|-+|+||||+|..||..+.   . +.+|..|.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~  289 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDA  289 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhH
Confidence            4478889999999999999999987653   3 33677774

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI

Probab=93.37  E-value=0.69  Score=51.05  Aligned_cols=47  Identities=21%  Similarity=0.396  Sum_probs=38.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ   75 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~   75 (276)
                      ..++.+++|-+|+||||+...+...+.+.|++|.++-  |.+.....|.
T Consensus       445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lA--PTgrAA~~L~  491 (1960)
T TIGR02760       445 TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIIT--AGSLSAQELR  491 (1960)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHH
Confidence            3578889999999999999999999989999999885  5444555554

This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.34  E-value=0.082  Score=42.74  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=23.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      +++++.|..|+||||++-.|+..+...|
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~   29 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDP   29 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCC
Confidence            3578889999999999999988875443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.32  E-value=0.085  Score=46.95  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...+++.|..|+||||++..||..|   |..++  |+|
T Consensus       133 ~~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D  165 (309)
T PRK08154        133 RRRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN  165 (309)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence            4567777999999999999998766   66655  777

>PLN02422 dephospho-CoA kinase

Probab=93.27  E-value=0.12  Score=44.06  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=25.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.+.|.-|+||||++..|+    +.|..  ++|+|
T Consensus         2 ~~igltG~igsGKstv~~~l~----~~g~~--~idaD   32 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK----SSGIP--VVDAD   32 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH----HCCCe--EEehh
Confidence            467888999999999998887    35665  58999

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=93.26  E-value=0.07  Score=45.03  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -=+++.|.+|+||||+|.-+|..+.   .+.-.+.+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg   83 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELG---VNFKITSG   83 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT-----EEEEEC
T ss_pred             ceEEEECCCccchhHHHHHHHhccC---CCeEeccc
Confidence            3467889999999999988887654   44444444

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.23  E-value=0.11  Score=42.11  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=25.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++.|..|+||||++..||..+   |  .-++|.|.
T Consensus         6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~   37 (172)
T PRK05057          6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ   37 (172)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence            36777999999999999999875   3  33678874

>PRK14532 adenylate kinase; Provisional

Probab=93.22  E-value=0.077  Score=43.33  Aligned_cols=30  Identities=23%  Similarity=0.173  Sum_probs=23.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|.+|+||||+|..||..+   |  ...|+.|
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~~   32 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER---G--MVQLSTG   32 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence            5668999999999999998544   4  3446665

>PRK02496 adk adenylate kinase; Provisional

Probab=93.20  E-value=0.1  Score=42.43  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=18.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..||..+
T Consensus         4 i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5567899999999999998765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=93.18  E-value=0.88  Score=42.20  Aligned_cols=40  Identities=15%  Similarity=-0.026  Sum_probs=24.7

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|..+......+...+.+.+++.+.++ -+|+|++-.
T Consensus        80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~  119 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDG  119 (429)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccC
Confidence            4566666554433444456677777777665 568888753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=93.17  E-value=0.15  Score=42.59  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=26.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++.+.|.-|+||||++..|+..   .|..  ++|+|.
T Consensus         6 ~~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD~   39 (204)
T PRK14733          6 TYPIGITGGIASGKSTATRILKEK---LNLN--VVCADT   39 (204)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH---cCCe--EEeccH
Confidence            455778899999999999887743   3665  589983

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=93.17  E-value=0.12  Score=45.00  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .-+++++|..|+||||+...+...+...+.+++.|+
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE  115 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE  115 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence            457888999999999999988888876677888776

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK13975 thymidylate kinase; Provisional

Probab=93.16  E-value=0.11  Score=42.63  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +++++-|-.|+||||++..||..+.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678889999999999999999885

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=93.13  E-value=0.23  Score=40.91  Aligned_cols=40  Identities=25%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +..+-+.|..|+|||++-..+-..|.+. +++.+|-.|...
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t   52 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT   52 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence            3556788999999999999999999988 999999999765

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=93.13  E-value=0.12  Score=42.57  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.++.+.|.-|+||||++..|+.    .|.  -+||+|
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~----~g~--~~i~~D   33 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE----LGA--PVIDAD   33 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH----cCC--EEEEec
Confidence            35678889999999999988775    464  578999

>PRK13949 shikimate kinase; Provisional

Probab=93.10  E-value=0.081  Score=42.69  Aligned_cols=30  Identities=37%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|-+|+||||++..||..+.     .-.+|+|
T Consensus         4 I~liG~~GsGKstl~~~La~~l~-----~~~id~D   33 (169)
T PRK13949          4 IFLVGYMGAGKTTLGKALARELG-----LSFIDLD   33 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC-----CCeeccc
Confidence            56668999999999999998773     3467877

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.04  E-value=0.11  Score=43.88  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D   65 (276)
                      ..+++.|..|+|||.+..+++..+.+  .+.+|+.++++
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~   73 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE   73 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence            34788999999999999999999886  47899999987

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK04182 cytidylate kinase; Provisional

Probab=93.04  E-value=0.094  Score=42.17  Aligned_cols=30  Identities=30%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++++|..|+||||++..||..+   |..  ++|+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l---g~~--~id~   31 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL---GLK--HVSA   31 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CCc--EecH
Confidence            47888999999999999998765   443  4564

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=92.97  E-value=0.14  Score=42.46  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D   65 (276)
                      +++.|..|.|||++..+++..++.    .+.++.++|.-
T Consensus        41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k   79 (205)
T PF01580_consen   41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK   79 (205)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred             EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence            567799999999999999999998    34455565554

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.92  E-value=0.58  Score=44.62  Aligned_cols=37  Identities=38%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             chhhhhcCC-ceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        18 ~l~~~~~~~-~~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      .|++.+... -....+++|..|+||||+|..+|..+--
T Consensus        27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            344554433 3445688899999999999999998853

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=92.89  E-value=0.12  Score=41.82  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|..|+||||+|..++..+   |.+++.|+..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~   35 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATA   35 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence            47888999999999999998653   5567666554

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=92.86  E-value=0.16  Score=42.26  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=24.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.++-+.|+.|+||||+|--++    +.|  +-+||+|
T Consensus         2 ~~iIglTG~igsGKStva~~~~----~~G--~~vidaD   33 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILA----ELG--FPVIDAD   33 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHH----HcC--CeEEEcc
Confidence            4567777999999999876554    455  4568999

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=92.81  E-value=0.1  Score=44.30  Aligned_cols=29  Identities=28%  Similarity=0.223  Sum_probs=25.4

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -|+.||||+...||..+..+|+||++-..
T Consensus         5 vG~gGKTtl~~~l~~~~~~~g~~v~~TTT   33 (232)
T TIGR03172         5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTT   33 (232)
T ss_pred             EcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence            45689999999999999999999997544

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=92.79  E-value=0.09  Score=45.94  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=26.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.+.|..|+||||++..|+..+...|  +.+|.+|.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd   35 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDD   35 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcc
Confidence            55679999999999999998886554  44556663

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=92.78  E-value=0.17  Score=44.70  Aligned_cols=47  Identities=17%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +..+.......+++.|..|+||||++..++..+...+.+...++.+.
T Consensus        30 ~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~   76 (319)
T PRK00440         30 KSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA   76 (319)
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence            33333333333588999999999999999999887666555566543

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=92.78  E-value=0.13  Score=41.94  Aligned_cols=33  Identities=36%  Similarity=0.429  Sum_probs=26.6

Q ss_pred             CCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |--|+||||.+..|+.+|...|++ .++..-|..
T Consensus         3 GiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~   35 (186)
T PF02223_consen    3 GIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGS   35 (186)
T ss_dssp             ESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTS
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCC
Confidence            456999999999999999999999 445554443

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=92.69  E-value=0.18  Score=41.86  Aligned_cols=31  Identities=32%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.+.|..|+||||++..|+.    .|.  -+||+|
T Consensus         2 ~~igitG~igsGKst~~~~l~~----~g~--~vid~D   32 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD   32 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence            4577889999999999998873    565  468998

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=92.68  E-value=0.24  Score=45.15  Aligned_cols=36  Identities=31%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -++-+.|..|+||||++..|...|..+ ++|.+|..+
T Consensus         6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~   41 (369)
T PRK14490          6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG   41 (369)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence            456667899999999999999999999 999999754

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=92.63  E-value=0.16  Score=50.72  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ++.++.|.+|+||||+...+...+...|++|.++-
T Consensus       369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A  403 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA  403 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            57889999999999999999988888899999873

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK07429 phosphoribulokinase; Provisional

Probab=92.62  E-value=0.17  Score=45.41  Aligned_cols=38  Identities=39%  Similarity=0.352  Sum_probs=28.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.++-+.|..|+||||++..|+..+...+  +.++..|-.
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~   45 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY   45 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence            45667789999999999999998776543  445556643

>PRK14530 adenylate kinase; Provisional

Probab=92.60  E-value=0.13  Score=43.14  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||++..||..+
T Consensus         6 I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          6 ILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5667999999999999998776

>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family

Probab=92.60  E-value=0.17  Score=51.01  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAF   74 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l   74 (276)
                      .++.|+.|+||||+...+...+.+.|.+|.++|.+.. ..+...+
T Consensus       441 ~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l  485 (829)
T TIGR03783       441 KFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELI  485 (829)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHh
Confidence            4777999999999999999999999999999998753 3345555

Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=92.59  E-value=0.19  Score=50.93  Aligned_cols=49  Identities=20%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhccc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQR   77 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~~   77 (276)
                      ..+++.|..|+|||++|..||..+-..+.++..+|+...   +..+.++|..
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~  647 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP  647 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC
Confidence            445677999999999999999999888889999998742   3345555543

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=92.54  E-value=0.088  Score=48.41  Aligned_cols=40  Identities=25%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      .-|+||||++..|+.+|.+.|+++.+-=-  ++++.-.||.+
T Consensus        64 PaGEGKsTttiGL~~al~~lgK~~i~alR--ePSlGP~fGiK  103 (554)
T COG2759          64 PAGEGKTTTTIGLVDALNKLGKKAIIALR--EPSLGPVFGIK  103 (554)
T ss_pred             CCCCCcceeeehHHHHHHhcCchheEEec--cCCcCCccccc
Confidence            66999999999999999999999876433  34444455544

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=92.52  E-value=0.54  Score=40.24  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=46.2

Q ss_pred             ccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        16 ~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      ..+....+.+.+..=+..-|--|+|||++.-++...++..|.|++=|+-+.-..+...+..
T Consensus        40 ~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~  100 (249)
T PF05673_consen   40 IENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL  100 (249)
T ss_pred             HHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence            3344455555554445668999999999999999999999999888887766777666643

>TIGR01351 adk adenylate kinases

Probab=92.51  E-value=0.11  Score=43.28  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=18.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..||..+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            4667899999999999988644

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=92.50  E-value=0.13  Score=42.40  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=21.7

Q ss_pred             EEEEeCCCCchHHHHHHHH-HHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~l-A~~la~~G~kVlliD~D   65 (276)
                      |.++.|++|.|||+.|+.. ....-+.|++|.. ..+
T Consensus         2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~   37 (193)
T PF05707_consen    2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP   37 (193)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred             EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence            4688899999999999998 6665577877765 544

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=92.49  E-value=0.17  Score=40.64  Aligned_cols=25  Identities=44%  Similarity=0.399  Sum_probs=21.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++++.|-+||||||+.-.+...+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            5778888999999999998877666

>PRK13976 thymidylate kinase; Provisional

Probab=92.48  E-value=0.22  Score=41.73  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=29.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~   67 (276)
                      ++++-|--|+||||.+..|+..|... | ++|.+. -.|.
T Consensus         2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-~eP~   40 (209)
T PRK13976          2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT-REPG   40 (209)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe-eCCC
Confidence            46778899999999999999999986 6 577644 3443

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=92.48  E-value=0.074  Score=41.77  Aligned_cols=34  Identities=32%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             CCCCchHHHHHHHHHHHHHhCCCcEEEEecCC---CCChhHH
Q 023886           35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDA   73 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~---~~~l~~~   73 (276)
                      |-.|+||||++..||..|.     --.||.|-   +.|+..+
T Consensus         2 GVsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~KM   38 (161)
T COG3265           2 GVSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEKM   38 (161)
T ss_pred             CCCccCHHHHHHHHHHHcC-----CceecccccCCHHHHHHH
Confidence            5679999999999998876     34689994   4454433

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=92.42  E-value=0.13  Score=41.92  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +++-|.+|+||||.|..||..
T Consensus         3 iiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           3 ILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455689999999999999976

>TIGR03263 guanyl_kin guanylate kinase

Probab=92.41  E-value=0.12  Score=41.75  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++++.|..|+||||++..|+..+
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            467888999999999988888754

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=92.41  E-value=0.23  Score=41.46  Aligned_cols=32  Identities=28%  Similarity=0.261  Sum_probs=24.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++.+.|..|+||||++.-|+.    .|..  ++|+|
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~----~g~~--v~d~D   36 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAE----MGCE--LFEAD   36 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH----CCCe--EEecc
Confidence            34567789999999999887764    5654  57888

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=92.40  E-value=0.21  Score=33.21  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      +.++.|+.|+||||+--++-..|-.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcC
Confidence            5788999999999998888776653

>PRK00279 adk adenylate kinase; Reviewed

Probab=92.39  E-value=0.13  Score=43.08  Aligned_cols=43  Identities=16%  Similarity=-0.004  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886          200 ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ  246 (276)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~  246 (276)
                      .+..|++.+++....+.+.|....    .++.+-...+..++...+.
T Consensus       167 ~i~~Rl~~y~~~~~~i~~~y~~~~----~~~~id~~~~~~~v~~~i~  209 (215)
T PRK00279        167 TVRKRLEVYHKQTAPLIDYYKKKG----KLKKIDGTGSIDEVFADIL  209 (215)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhCC----CEEEEECCCCHHHHHHHHH
Confidence            344888888888899999887642    2333444566666554443

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=92.39  E-value=0.13  Score=41.98  Aligned_cols=25  Identities=28%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++++||..||||||+...|=...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4678999999999999998875444

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=92.38  E-value=0.21  Score=42.10  Aligned_cols=35  Identities=31%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~   64 (276)
                      +++++|-+-.||||-|..|..+|.++|.|  |.++|-
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d   39 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD   39 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence            57888999999999999999999999854  565553

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=92.38  E-value=0.14  Score=48.68  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=30.4

Q ss_pred             CCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      .-|+||||++..|+.+|. +.|+|+.+.==  |+++.-.||.+
T Consensus        80 P~GEGKtTttIGL~~aL~~~lgk~~~~~lR--ePSlGP~FGiK  120 (625)
T PTZ00386         80 PLGEGKSTTTIGLAQSLGAHLHRKTFACIR--QPSQGPTFGIK  120 (625)
T ss_pred             CCCCCccchhhhhHHHHHHHhCcceEEEEe--cCCcCCcCCcc
Confidence            679999999999999999 78999886543  34444445544

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=92.36  E-value=0.29  Score=40.91  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.+++=|--|+||||.+..|+..|.+.|.+|.+.=
T Consensus         4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr   38 (208)
T COG0125           4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR   38 (208)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            45777789999999999999999999999888653

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=92.34  E-value=0.34  Score=48.40  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC-------CCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~   64 (276)
                      ++..|.+|+|||+++..+|..+++.       |+++.-+|+
T Consensus       206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~  246 (731)
T TIGR02639       206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM  246 (731)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence            3566999999999999999999764       455555553

>TIGR00484 EF-G translation elongation factor EF-G

Probab=92.30  E-value=0.81  Score=45.38  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=24.7

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|.......-.+....+..+++.++++. +++|++-.
T Consensus       100 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~  139 (689)
T TIGR00484       100 DGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK  139 (689)
T ss_pred             CEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence            34555554444334455677777777787764 78888753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=92.26  E-value=0.16  Score=47.12  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=25.3

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +.+++.+....-+++.|.+|+||||+|..+|..+
T Consensus        27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            5555555544456678999999999999998643

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=92.25  E-value=0.13  Score=44.38  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=22.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ..++++.|.+|+||||++..++..+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            446788899999999999999877663

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=92.24  E-value=0.1  Score=50.78  Aligned_cols=35  Identities=23%  Similarity=0.139  Sum_probs=28.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV   59 (276)
                      ....+|+.++|.+|||||+++..+|.+|-+.=.|.
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf  469 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF  469 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence            34468899999999999999999999987654444

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=92.23  E-value=1.3  Score=43.18  Aligned_cols=40  Identities=8%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|.-...-...++...+..+.+.++++ -+++|++-.
T Consensus        89 D~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~  128 (594)
T TIGR01394        89 DGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR  128 (594)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence            5566666665555677778888888888886 578888854

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK14738 gmk guanylate kinase; Provisional

Probab=92.21  E-value=0.16  Score=42.34  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=20.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ....+++++.|..|+||||++..|.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~   34 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMR   34 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHH
Confidence            3456778889999999999887765

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.20  E-value=0.96  Score=44.23  Aligned_cols=37  Identities=38%  Similarity=0.385  Sum_probs=27.6

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      .|++.+.. +.....+++|..|+||||+|..||..|--
T Consensus        27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34444443 33456688999999999999999998864

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=92.17  E-value=0.2  Score=43.01  Aligned_cols=32  Identities=28%  Similarity=0.257  Sum_probs=24.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++.+.|.-|+||||++.-|+..   .|..  +||+|
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~---~G~~--viDaD   33 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREE---HHIE--VIDAD   33 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH---cCCe--EEehH
Confidence            45777899999999998776642   2654  49999

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=92.14  E-value=0.15  Score=40.66  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=24.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++|-.|+||||+|..||..+   |..  ++|.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~   32 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG   32 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence            57889999999999999998754   544  56654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=92.10  E-value=1.8  Score=39.85  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ..+.+.|.-+.||||++-.|...+...|
T Consensus        13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g   40 (394)
T TIGR00485        13 VNIGTIGHVDHGKTTLTAAITTVLAKEG   40 (394)
T ss_pred             EEEEEEeecCCCHHHHHHHHHhhHHHhh
Confidence            3356778999999999999976655444

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=92.07  E-value=0.16  Score=42.36  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .+++++|-=|+||||+|..||.++.
T Consensus         5 ~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           5 MVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             cEEEEecccccCHHHHHHHHHHHhC
Confidence            4578899999999999999998876

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=92.02  E-value=0.17  Score=41.84  Aligned_cols=38  Identities=29%  Similarity=0.214  Sum_probs=34.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC--C-CcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV--R-PSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~--G-~kVlliD~D   65 (276)
                      +-++++||.-|+||||++.+|-..+.++  + +++.-+..|
T Consensus        31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD   71 (282)
T KOG2878|consen   31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD   71 (282)
T ss_pred             cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence            6788999999999999999999999875  3 589999998

>TIGR00152 dephospho-CoA kinase

Probab=92.00  E-value=0.17  Score=41.42  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||++..|+...   |..  ++|+|
T Consensus         2 i~itG~~gsGKst~~~~l~~~~---~~~--~i~~D   31 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKY---HFP--VIDAD   31 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhc---CCe--EEeCC
Confidence            6788999999999998777532   344  58998

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN02840 tRNA dimethylallyltransferase

Probab=91.97  E-value=0.17  Score=46.79  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=26.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++++.|..|+||||+|..||..+.   ..  +|.+|
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~---~~--iis~D   53 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLN---GE--IISAD   53 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCC---CC--eEecc
Confidence            356789999999999999999998763   22  46666

>PRK13351 elongation factor G; Reviewed

Probab=91.96  E-value=0.84  Score=45.26  Aligned_cols=39  Identities=21%  Similarity=0.120  Sum_probs=25.0

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      +.+++|.........++...+..++..++++. +|+|++-
T Consensus        98 D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D  136 (687)
T PRK13351         98 DGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMD  136 (687)
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCC
Confidence            44566555544444556677777777777764 7888874

>PRK03003 GTP-binding protein Der; Reviewed

Probab=91.91  E-value=1.7  Score=41.03  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=17.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ++..+.+-|.+||||||+.-.|.
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~   59 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRIL   59 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHh
Confidence            34445666999999999988775

>TIGR02746 TraC-F-type type-IV secretion system protein TraC

Probab=91.80  E-value=0.26  Score=49.66  Aligned_cols=45  Identities=20%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQ   75 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~   75 (276)
                      .++.|..|.|||+++..++..+...|.+|.+||-+.. ..+...+|
T Consensus       433 ~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g  478 (797)
T TIGR02746       433 IAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG  478 (797)
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence            5677999999999999999988889999999887642 22344444

The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=91.78  E-value=0.22  Score=50.50  Aligned_cols=37  Identities=24%  Similarity=0.223  Sum_probs=31.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D~   66 (276)
                      -.+.-|.+|||||+++..||..+..       .|+++..+|+..
T Consensus       201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~  244 (857)
T PRK10865        201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA  244 (857)
T ss_pred             ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence            3456699999999999999999864       478999888874

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=91.74  E-value=0.3  Score=49.18  Aligned_cols=57  Identities=23%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             hhhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC----C---CcEEEEecC
Q 023886            9 DQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV----R---PSVLIISTD   65 (276)
Q Consensus         9 ~~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~----G---~kVlliD~D   65 (276)
                      .++++.+..-|...+.+ .+..+++++|++|+|||+++..+...|.+.    +   .+|+.|++-
T Consensus       761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm  825 (1164)
T PTZ00112        761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM  825 (1164)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence            45667777777776653 344678899999999999999998888531    2   456777774

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=91.73  E-value=2.7  Score=33.70  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .|++.+.|.-.+||||++-.||..+
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~f   32 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIF   32 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHh
Confidence            3556666778899999999999433

>PTZ00088 adenylate kinase 1; Provisional

Probab=91.61  E-value=0.18  Score=42.82  Aligned_cols=30  Identities=33%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|.+|+||||+|..||..+   |  +-.|++|
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~---g--~~~is~g   38 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKE---N--LKHINMG   38 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---C--CcEEECC
Confidence            5567899999999999988754   3  4556666

>PLN03210 Resistant to P

Probab=91.59  E-value=0.29  Score=51.35  Aligned_cols=39  Identities=28%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ....+++.+.|.||+||||+|..++..+...-.-.+.+|
T Consensus       204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~  242 (1153)
T PLN03210        204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID  242 (1153)
T ss_pred             cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence            345678888899999999999999988876533233444

syringae 6; Provisional

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=91.54  E-value=0.13  Score=41.16  Aligned_cols=26  Identities=35%  Similarity=0.236  Sum_probs=19.8

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      +--+--|+||||++..|+..+.+-|+
T Consensus         3 vPIAtiGCGKTTva~aL~~LFg~wgH   28 (168)
T PF08303_consen    3 VPIATIGCGKTTVALALSNLFGEWGH   28 (168)
T ss_pred             eeecCCCcCHHHHHHHHHHHcCCCCc
Confidence            34457899999999999987754443

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=91.54  E-value=0.096  Score=40.23  Aligned_cols=43  Identities=30%  Similarity=0.257  Sum_probs=24.1

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +.-|-+|+||||++..||..+...=+|   |-+-|.---++.+|..
T Consensus         3 Lleg~PG~GKT~la~~lA~~~~~~f~R---Iq~tpdllPsDi~G~~   45 (131)
T PF07726_consen    3 LLEGVPGVGKTTLAKALARSLGLSFKR---IQFTPDLLPSDILGFP   45 (131)
T ss_dssp             EEES---HHHHHHHHHHHHHTT--EEE---EE--TT--HHHHHEEE
T ss_pred             eeECCCccHHHHHHHHHHHHcCCceeE---EEecCCCCcccceeee
Confidence            456889999999999999876543233   3333444457777764

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family

Probab=91.51  E-value=0.32  Score=47.41  Aligned_cols=39  Identities=21%  Similarity=0.220  Sum_probs=34.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .++-|.-|+|||++..+|+....+.|..|+++|-+-...
T Consensus       183 tlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~e  221 (643)
T TIGR03754       183 TLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDAD  221 (643)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Confidence            467799999999999999999999999999998886543

Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=91.50  E-value=0.15  Score=45.04  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=25.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..-+++.|.+|+|||++|..+|..+.   .++..++..
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~   64 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGP   64 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccc
Confidence            34467889999999999999988663   344444443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=91.48  E-value=0.2  Score=50.25  Aligned_cols=35  Identities=34%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++-|-+|.||||+-+.|-..|...|+||||...=
T Consensus       688 ~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyT  722 (1100)
T KOG1805|consen  688 ALILGMPGTGKTTTISLLIKILVALGKKVLLTSYT  722 (1100)
T ss_pred             heeecCCCCCchhhHHHHHHHHHHcCCeEEEEehh
Confidence            45678999999999999999999999999998643

>PLN02459 probable adenylate kinase

Probab=91.42  E-value=0.27  Score=42.52  Aligned_cols=43  Identities=14%  Similarity=0.020  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886          200 ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ  246 (276)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~  246 (276)
                      .+.+|++.+.+....+.+.|.+...    ++.+-...++.++.+-+.
T Consensus       204 ~i~kRL~~Y~~~t~pv~~~Y~~~g~----l~~id~~~~~~eV~~~i~  246 (261)
T PLN02459        204 VVKARLRVYKEESQPVEDFYRKRGK----LLEFELPGGIPETWPRLL  246 (261)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcCC----eEEEeCCCCHHHHHHHHH
Confidence            4458889999999999999987532    233334445666544333

>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional

Probab=91.38  E-value=0.26  Score=49.95  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=36.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhcc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQ   76 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~   76 (276)
                      .++.|+.|.||||++..++..+...|.+|.++|-+.. ..+...+|.
T Consensus       452 ~~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~sy~~l~~~lGG  498 (844)
T PRK13721        452 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGG  498 (844)
T ss_pred             EEEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCCCHHHHHHHcCC
Confidence            5677999999999999999888888999999988853 234555543

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.37  E-value=0.18  Score=41.67  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=22.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +.+++++.|..|+||||++..|+..+
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34667888999999999999998865

>PLN02748 tRNA dimethylallyltransferase

Probab=91.36  E-value=0.26  Score=46.28  Aligned_cols=33  Identities=36%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++++.|..|+|||++|..||..+     ..-+|++|
T Consensus        22 ~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~D   54 (468)
T PLN02748         22 AKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINAD   54 (468)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCc
Confidence            4577888999999999999998765     36688999

>PLN02318 phosphoribulokinase/uridine kinase

Probab=91.32  E-value=0.31  Score=47.04  Aligned_cols=39  Identities=33%  Similarity=0.482  Sum_probs=30.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +...|+.+.|..|+||||++..|+..+    ..+.+|..|-..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~  101 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYN  101 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEccee
Confidence            345777899999999999999998765    246778777543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=91.30  E-value=0.26  Score=47.73  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D   65 (276)
                      -+|+.|..|+|||.++.++|..+.+  .|++|+.+.++
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae  353 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE  353 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            4789999999999999999999876  48999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2woo_A	329	Nucleotide-Free Form Of S. Pombe Get3 Length = 329		2e-75
3ibg_A	348	Crystal Structure Of Aspergillus Fumigatus Get3 Wit		3e-73
3iqw_A	334	Amppnp Complex Of C. Therm. Get3 Length = 334		2e-68
3io3_A	348	Get3 With Adp From D. Hansenii In Closed Form Lengt		1e-54
2woj_A	354	Adp-Alf4 Complex Of S. Cerevisiae Get3 Length = 354		2e-53
3vlc_A	354	Crystal Structure Of S. Cerevisiae Get3 In The Semi		2e-53
3a36_A	362	Structural Insight Into The Membrane Insertion Of T		2e-53
3sja_A	362	Crystal Structure Of S. Cerevisiae Get3 In The Open		2e-53
3idq_A	369	Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angs		2e-53
3ug6_A	349	Crystal Structure Of Get3 From Methanocaldococcus J		8e-41
3zq6_A	324	Adp-Alf4 Complex Of M. Therm. Trc40 Length = 324		5e-40
1f48_A	589	Crystal Structure Of The Escherichia Coli Arsenite-		2e-13

>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3 Length = 329

Iteration: 1
 Score =  278 bits (711), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/258 (53%), Positives = 182/258 (70%), Gaps = 10/258 (3%)
Query: 17  GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
           G++ N+LEQ SLKW+F            S  L+I +++VR SVL+ISTDPAHNLSDAF  
Sbjct: 8   GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
Query: 77  RFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTEG------MDSLFSELANAIPGIDEAM 128
           +F K    V GF NL AME+DP  S++E T   +       +  +  +LA  IPGIDEA+
Sbjct: 68  KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127
Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
           +FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MINQM  
Sbjct: 128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187
Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
           + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct: 188 IMGVNA--NEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245
Query: 249 TKFEIDTHNIIINQVLYD 266
           T +EIDTHNI++NQ+L D
Sbjct: 246 TSYEIDTHNIVVNQLLLD 263

>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound Adp Length = 348

Iteration: 1
 Score =  271 bits (693), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 140/276 (50%), Positives = 188/276 (68%), Gaps = 16/276 (5%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E ++++IL Q +L+W+F            S  L+I LA+VR SVL+ISTDPAHNLSDAF 
Sbjct: 14  EPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFG 73
Query: 76  QRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPG 123
           Q+F K   LV+G+SNL AME+DP  S+++   S +          GM ++  +LA +IPG
Sbjct: 74  QKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMGNMMQDLAFSIPG 133
Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
           +DEAMSFAE+LK V+++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L ++FG M+
Sbjct: 134 VDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPML 193
Query: 184 NQ-MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242
           N  +    G+      D LL ++E +++ I  VN QFK+PD+TTFVCVCI EFLSLYETE
Sbjct: 194 NSILGARGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETE 253
Query: 243 RLVQELTKFEIDTHNIIINQVLYDDEGM---HCNCR 275
           R++QELT + IDTH I++NQ+L+  EG     CN R
Sbjct: 254 RMIQELTSYGIDTHAIVVNQLLFPKEGSGCEQCNAR 289

>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3 Length = 334

Iteration: 1
 Score =  255 bits (652), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 178/267 (66%), Gaps = 10/267 (3%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
           E ++++IL+Q SL+W+F            S  L+I LA+VR SVL++STDPAHNLSDAF 
Sbjct: 4   EPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFS 63
Query: 76  QRFTKTPTLVNGFSNLYAMEVDPS------VEEETGSTE---GMDSLFSELANAIPGIDE 126
           Q+F K   LV GF NLYAME+DP+      +  +TG  +   G   +  +LA AIPGIDE
Sbjct: 64  QKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDE 123
Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
           AMSFAE+LK V ++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L  ++G ++N +
Sbjct: 124 AMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGI 183
Query: 187 TRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
               G + +      ++ +L+ ++  I  VN QFKD  LTTFVCVCIPEFLSLYETER++
Sbjct: 184 LGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243
Query: 246 QELTKFEIDTHNIIINQVLYDDEGMHC 272
           QEL  + IDTH I++NQ+L+   G  C
Sbjct: 244 QELANYGIDTHCIVVNQLLFPKPGSDC 270

>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form Length = 348

Iteration: 1
 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 165/285 (57%), Gaps = 31/285 (10%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +I++ DSLKW+F            SS +++ LA  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELANAIPG 123
           F Q+F K    V G  NL  ME+DP            +      + + S+ S++  +IPG
Sbjct: 66  FCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPG 125
Query: 124 IDEAMSFAEMLKLVQ------------TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK 171
           IDEA+SF E+LK ++             + Y  I+FDTAPTGHTLR LQ PSTLEK L K
Sbjct: 126 IDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSK 185
Query: 172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVC 231
              L  K G M++ M      D       +  +L  ++  +  VN+QF +P+LTTF+CVC
Sbjct: 186 FKDLSGKLGPMLSMMGGGQQQD-------IFEKLNEVQKNVSEVNEQFTNPELTTFICVC 238
Query: 232 IPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
           I EFLSLYETER++QEL  + +D ++I++NQ+L+ +   H   RC
Sbjct: 239 ISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRC 283

>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3 Length = 354

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288

>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open Conformation In Complex With Get1 Cytosolic Domain At 4.5 Angstrom Resolution Length = 354

Iteration: 1
 Score =  206 bits (523), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288

>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail- Anchored Proteins By Get3 Length = 362

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288

>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State In Complex With Get1 Cytosolic Domain Length = 362

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288

>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom Resolution Length = 369

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16  EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
           E ++ +++   + KW+F            S  ++I +A  +P+   L+ISTDPAHNLSDA
Sbjct: 6   EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74  FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
           F ++F K    V G +NL  ME+DPS                 GS    D L        
Sbjct: 66  FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
            ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
            L+K   + NK G M+N       +D       + G+L  +K  +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
           VCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288

>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus Jannaschii Length = 349

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 96/281 (34%), Positives = 148/281 (52%), Gaps = 25/281 (8%)
Query: 18  SVRNILEQ-----DSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
           S+R I E+     D  K++             S+   + LAE    V+I+STDPAH+L D
Sbjct: 11  SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRD 70
Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPS-------------VEEETGSTEGMDSLFSELAN 119
            F+Q F   PT V G+ NLY +E+DP              +EE     E ++    E+A 
Sbjct: 71  IFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL-EMAA 129
Query: 120 AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKF 179
             PG DE+ +F   LK + + ++  ++FDTAPTGHTLR L  P  ++K + K++ L+ + 
Sbjct: 130 LSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQM 189
Query: 180 GGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236
            G +  M +L    G D++   D +L  LE MK+ I R      DP+ T F  V IPE +
Sbjct: 190 SGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEM 249
Query: 237 SLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCN-CRC 276
           S+ E+ER ++ L K+ I    +I+NQ++ +D  + C+ CR 
Sbjct: 250 SILESERAMKALQKYGIPIDAVIVNQLIPED--VQCDFCRA 288

>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40 Length = 324

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 17/246 (6%)
Query: 45  SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV---- 100
           S+  ++ +A      L+ISTDPAH+LSD+ ++    TPT +    NLYA+E+DP V    
Sbjct: 31  SAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEE 88
Query: 101 -----EEETGSTEGM--DSLFSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAP 151
                +E+     GM  D L  ++  A+  PGIDEA +F + L+ + T +Y  ++FDTAP
Sbjct: 89  YQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAP 148
Query: 152 TGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKD 210
           TGHTLRLL FP  ++  + KM+ ++ + G M      +   + DE  ED  L  +E  K 
Sbjct: 149 TGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKK 208
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGM 270
            I    +   DP+ T+F  V IPE +S+YE+ER ++ L K+ I    +I+NQVL ++   
Sbjct: 209 QINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDC 268
Query: 271 H-CNCR 275
             CN R
Sbjct: 269 EFCNAR 274

>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-Translocating Atpase Length = 589

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 34/237 (14%)
Query: 49  SILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108
           +I LAE    VL++STDPA N+   F Q    T   +     L A+E+DP    +     
Sbjct: 29  AIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRAR 88
Query: 109 GMDSLFSELA-NAIPGIDEAMS---------FAEMLKLVQTMD----YSCIVFDTAPTGH 154
            +D +   L  + +  I+E +S         F E   L+        +  I+FDTAPTGH
Sbjct: 89  IVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGH 148
Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIER 214
           T+RLLQ P      +D      +  G M                      LE  ++    
Sbjct: 149 TIRLLQLPGAWSSFIDSNPEGASCLGPMAG--------------------LEKQREQYAY 188
Query: 215 VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMH 271
             +   DP  T  V V   +  +L E  R   EL    +    ++IN VL   E  +
Sbjct: 189 AVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAN 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	1e-112
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	1e-100
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	4e-98
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	2e-97
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	3e-97
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	9e-95
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	1e-80
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	1e-64
3igf_A	374	ALL4481 protein; two-domained protein consisting o	1e-77
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	9e-09
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	5e-08
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	5e-08
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	9e-08
3cwq_A	209	Para family chromosome partitioning protein; alpha	7e-06
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	1e-04
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	2e-04
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	3e-04
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	3e-04
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	4e-04
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	6e-04
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	7e-04

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329

 Score =  325 bits (834), Expect = e-112
 Identities = 147/272 (54%), Positives = 193/272 (70%), Gaps = 10/272 (3%)

Query: 12  LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
            +   G++ N+LEQ SLKW+FVGGKGGVGKTT S  L+I +++VR SVL+ISTDPAHNLS
Sbjct: 3   FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62

Query: 72  DAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------EETGSTEGMDSLFSELANAIPG 123
           DAF  +F K    V GF NL AME+DP++         ++      +  +  +LA  IPG
Sbjct: 63  DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPG 122

Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
           IDEA++FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+  L ++FG MI
Sbjct: 123 IDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMI 182

Query: 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER 243
           NQM  + G++    E  L G++E M+  I  VNKQFK+PDLTTFVCVCI EFLSLYETER
Sbjct: 183 NQMGSIMGVNAN--EQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETER 240

Query: 244 LVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
           ++QELT +EIDTHNI++NQ+L D       C 
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNTTCPQCM 272

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334

 Score =  294 bits (755), Expect = e-100
 Identities = 143/268 (53%), Positives = 185/268 (69%), Gaps = 10/268 (3%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
            E ++++IL+Q SL+W+FVGGKGGVGKTT S  L+I LA+VR SVL++STDPAHNLSDAF
Sbjct: 3   MEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAF 62

Query: 75  QQRFTKTPTLVNGFSNLYAMEVDP---------SVEEETGSTEGMDSLFSELANAIPGID 125
            Q+F K   LV GF NLYAME+DP             +  +  G   +  +LA AIPGID
Sbjct: 63  SQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGID 122

Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
           EAMSFAE+LK V ++ Y  IVFDTAPTGHTLR LQFP+ LEK L K+  L  ++G ++N 
Sbjct: 123 EAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNG 182

Query: 186 MTRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244
           +    G + +      ++ +L+ ++  I  VN QFKD  LTTFVCVCIPEFLSLYETER+
Sbjct: 183 ILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERM 242

Query: 245 VQELTKFEIDTHNIIINQVLYDDEGMHC 272
           +QEL  + IDTH I++NQ+L+   G  C
Sbjct: 243 IQELANYGIDTHCIVVNQLLFPKPGSDC 270

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348

 Score =  290 bits (744), Expect = 4e-98
 Identities = 123/279 (44%), Positives = 171/279 (61%), Gaps = 31/279 (11%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
            E ++ +I++ DSLKW+FVGGKGGVGKTT SS +++ LA  +P    L+ISTDPAHNLSD
Sbjct: 5   LEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGMDSLFSELANAIP 122
           AF Q+F K    V G  NL  ME+DP                   + + S+ S++  +IP
Sbjct: 65  AFCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIP 124

Query: 123 GIDEAMSFAEMLKLVQ------------TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
           GIDEA+SF E+LK ++             + Y  I+FDTAPTGHTLR LQ PSTLEK L 
Sbjct: 125 GIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLS 184

Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
           K   L  K G M++ M           +  +  +L  ++  +  VN+QF +P+LTTF+CV
Sbjct: 185 KFKDLSGKLGPMLSMMGGGQ-------QQDIFEKLNEVQKNVSEVNEQFTNPELTTFICV 237

Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG 269
           CI EFLSLYETER++QEL  + +D ++I++NQ+L+ +  
Sbjct: 238 CISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGD 276

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Length = 349

 Score =  288 bits (739), Expect = 2e-97
 Identities = 101/277 (36%), Positives = 148/277 (53%), Gaps = 16/277 (5%)

Query: 9   DQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67
              +    G     LE+ D  K++  GGKGGVGKTT S+   + LAE    V+I+STDPA
Sbjct: 6   KDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65

Query: 68  HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFS 115
           H+L D F+Q F   PT V G+ NLY +E+DP               EE      M     
Sbjct: 66  HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL 125

Query: 116 ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175
           E+A   PG DE+ +F   LK + + ++  ++FDTAPTGHTLR L  P  ++K + K++ L
Sbjct: 126 EMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKL 185

Query: 176 KNKFGGMINQMTRLFGI---DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCI 232
           + +  G +  M +L      D++   D +L  LE MK+ I R      DP+ T F  V I
Sbjct: 186 RKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVI 245

Query: 233 PEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG 269
           PE +S+ E+ER ++ L K+ I    +I+NQ++ +D  
Sbjct: 246 PEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQ 282

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Length = 354

 Score =  288 bits (739), Expect = 3e-97
 Identities = 121/289 (41%), Positives = 172/289 (59%), Gaps = 35/289 (12%)

Query: 15  PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
            E ++ +++   + KW+FVGGKGGVGKTT S  ++I +A  +P    L+ISTDPAHNLSD
Sbjct: 5   VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSD 64

Query: 73  AFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------------------EETGSTEGMDS 112
           AF ++F K    V G +NL  ME+DPS                       +   +     
Sbjct: 65  AFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGG 124

Query: 113 LFSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLE 166
             ++L  +IPGIDEA+SF E++K ++  +      +  ++FDTAPTGHTLR LQ P+TL 
Sbjct: 125 ALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS 184

Query: 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT 226
           K L+K   + NK G M+N            G   + G+L  +K  +E + +QF DPDLTT
Sbjct: 185 KLLEKFGEITNKLGPMLNSFMGA-------GNVDISGKLNELKANVETIRQQFTDPDLTT 237

Query: 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
           FVCVCI EFLSLYETERL+QEL  +++D ++II+NQ+L+ +     NC+
Sbjct: 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCK 286

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 324

 Score =  281 bits (720), Expect = 9e-95
 Identities = 98/261 (37%), Positives = 146/261 (55%), Gaps = 16/261 (6%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
             +    +VF+GGKGGVGKTT S+  ++ +A      L+ISTDPAH+LSD+ ++    TP
Sbjct: 9   FNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTP 68

Query: 83  TLVNGFSNLYAMEVDPSVEEE-------------TGSTEGMDSLFSELANAIPGIDEAMS 129
           T +    NLYA+E+DP V  E              G    M     ++A+  PGIDEA +
Sbjct: 69  TKITE--NLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAA 126

Query: 130 FAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189
           F + L+ + T +Y  ++FDTAPTGHTLRLL FP  ++  + KM+ ++ + G M      +
Sbjct: 127 FDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNI 186

Query: 190 FG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
              + DE  ED  L  +E  K  I    +   DP+ T+F  V IPE +S+YE+ER ++ L
Sbjct: 187 LPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKAL 246

Query: 249 TKFEIDTHNIIINQVLYDDEG 269
            K+ I    +I+NQVL ++  
Sbjct: 247 EKYSIHADGVIVNQVLPEESD 267

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score =  253 bits (647), Expect = 1e-80
 Identities = 74/266 (27%), Positives = 106/266 (39%), Gaps = 38/266 (14%)

Query: 23  LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
             Q+   ++F  GKGGVGKT+ S   +I LAE    VL++STDPA N+   F Q    T 
Sbjct: 3   FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTI 62

Query: 83  TLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFSELANA----IPGIDE 126
             +     L A+E+DP               +     + + S+  +L+ A    I   DE
Sbjct: 63  QAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDE 122

Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
                    L+   D+  I+FDTAPTGHT+RLLQ P      +D      +  G M    
Sbjct: 123 FTGLLTDASLLTRFDH--IIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPM---- 176

Query: 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
                             LE  ++      +   DP  T  V V   +  +L E  R   
Sbjct: 177 ----------------AGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHL 220

Query: 247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
           EL    +    ++IN VL   E  + 
Sbjct: 221 ELAAIGLKNQYLVINGVLPKTEAAND 246

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score =  211 bits (539), Expect = 1e-64
 Identities = 59/285 (20%), Positives = 101/285 (35%), Gaps = 53/285 (18%)

Query: 1   MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60
            + ++  Q +       ++ + + ++    + + GKGGVGKTT ++ +++ LA++   V 
Sbjct: 300 PSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVH 359

Query: 61  IISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGM 110
           + ++DPA +LS                 +NL    +DP  E E              +  
Sbjct: 360 LTTSDPAAHLSMTLNGSL----------NNLQVSRIDPHEETERYRQHVLETKGKELDEA 409

Query: 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
                E     P  +E   F    ++++      +V DTAPTGHTL LL       + + 
Sbjct: 410 GKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIA 469

Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
           K M  K  F                                        +DP+ T  + V
Sbjct: 470 KKMGEKGHF---------------------------------TTPMMLLQDPERTKVLLV 496

Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
            +PE   + E   L  +L +  I     IIN  L   +      R
Sbjct: 497 TLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLR 541

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Length = 374

 Score =  239 bits (611), Expect = 1e-77
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 24/258 (9%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-TDPAHNLSDAFQQRFTKTPTLVNGFS 89
           +   GK GV +T  +   + LLA     VL+    +P        +Q  T  P  +    
Sbjct: 5   LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVL--PLLLEQTLTPDPQQIAP-- 60

Query: 90  NLYAMEVDPSVE------------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV 137
           NL  ++   SV              +   T  +  ++ +    +PG+D A++   + +  
Sbjct: 61  NLEVVQFQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYD 120

Query: 138 QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG------ 191
            +  Y  IV+D      TLR+L  P +L   + +   L                      
Sbjct: 121 ASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISS 180

Query: 192 -IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
             +  +  D        + + +++  +   DP       V   + L +     L     +
Sbjct: 181 FFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSAQQ 240

Query: 251 FEIDTHNIIINQVLYDDE 268
             +    +I      + +
Sbjct: 241 IGLTIGGVIQVSSQTEGD 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 2e-14
 Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 79/290 (27%)

Query: 18  SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD-AFQ 75
            +R  L +    K V + G  G GKT        +  +V                    Q
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTW-------VALDV--------------CLSYKVQ 177

Query: 76  QRF------------TKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPG 123
            +                 T++     L   ++DP+    +  +  +      +   +  
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 124 IDEAMSFAEML---------KLVQTMDYSC---------IVFDTAPTGHT--LRLLQFPS 163
           + ++  +   L         K     + SC          V D      T  + L     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 164 TLEKGLDKMMSLKNKFGGMINQM-------TRLFGIDDEFGEDALLGRLEGMKDVIERVN 216
           TL    D++ SL  K+     Q        T    +       +++     ++D +   +
Sbjct: 297 TLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAES--IRDGLATWD 345

Query: 217 --KQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264
             K      LTT +   +   L   E  ++   L+ F    H  I   +L
Sbjct: 346 NWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH--IPTILL 392

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Length = 245

 Score = 53.8 bits (130), Expect = 9e-09
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 52/226 (23%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTD--------------PAHNLSDAFQ 75
            FV  KGG G +  ++  +  L++     VL +                  + +L+D   
Sbjct: 8   GFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISN 67

Query: 76  QRFTKTPTLVNGF-----SNLYAMEVDPSVEEETG-STEGMDSLFSELANAIP------- 122
                  +L++        +L  +    + E+      E +  L    A+          
Sbjct: 68  ASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFG 127

Query: 123 -GIDE----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKN 177
             ID      +   + L +V T     +           +LL+     EK + ++  + N
Sbjct: 128 ASIDHVGVWVLEHLDELCIVTTPSLQSLR-------RAGQLLKLCKEFEKPISRIEIILN 180

Query: 178 KF--GGMIN--QMTRLFGIDDEFGEDALLGRL-EGMKDVIERVNKQ 218
           +      I   ++ ++ G         +  R+ +    + E +   
Sbjct: 181 RADTNSRITSDEIEKVIGRP-------ISKRIPQDEDAMQESLLSG 219

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Length = 254

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 50/240 (20%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
           GKGGVGKTT ++ L  ++A     +  +  DP   L                G S   A 
Sbjct: 7   GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTL------------GLSIEEAY 54

Query: 95  EVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154
            + P +E +                    I E      +L L   +D   +         
Sbjct: 55  AITPLIEMK------------------DEIREKTGDGGLLILNPKVDGD-LDKYGRYIDD 95

Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG----IDDEFGEDALLGRLEGMKD 210
            + L++     + G        +  G +++ +         +D   G + L        D
Sbjct: 96  KIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVD 155

Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGM 270
           ++               + V  P   S+     + +      I     +IN+V    E  
Sbjct: 156 MM---------------IAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEK 200

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 31  VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90
           +F    GGVG +T ++  +I  A +   V  ++ +        FQ       T+ +   +
Sbjct: 147 IFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNA--TMSDVIYS 204

Query: 91  LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM----DYSCIV 146
           L + + +  ++ E+   +  + +    +  +      +S+A++  L+  +    +Y  I+
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEII 264

Query: 147 FDTAP 151
            D   
Sbjct: 265 VDLPF 269

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
           F+  KGG GKTT    ++  L+    ++ ++ TDP  +L++  +          
Sbjct: 5  SFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFT 59

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77
               KGGVGKTT +  LS  LA      L+I  DP  + +   ++ 
Sbjct: 4  TVASFKGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRG 49

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTD--------------PAHNLSDAFQQRFTK 80
           GKGG GKTT ++ L + LA++   V I+  D                  L +        
Sbjct: 10  GKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARI 69

Query: 81  TPTLVNGFSNLYAMEVDPSVEEETG-STEGMDSLFSELAN 119
              +  G   +  +    S+E     + E ++ + +++  
Sbjct: 70  DEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIME 109

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Length = 260

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 30/141 (21%)

Query: 35  GKGGVGKTTCSSILSILLAEVRPSVLIISTD---------------PAHNLSDAFQQRFT 79
           GKGGVGKTT S+ ++  LA+     ++I                    ++  +  Q   T
Sbjct: 10  GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDAT 69

Query: 80  KTPTLVNG--FSNLYAMEVDPSVEEETGSTEGMDSLFSELANAI---------PGIDE-- 126
               L+      NLY +    + +++  + EG+  +  +L              GI+   
Sbjct: 70  LNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA 129

Query: 127 --AMSFAEMLKLVQTMDYSCI 145
             A+ FA+   +    + S +
Sbjct: 130 LMALYFADEAIITTNPEVSSV 150

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLS 71
          GKGG GKTT ++ LS+ L +    VL +  D    NLS
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLS 47

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
          KGGVGK+  S++ + L  ++   VL+I  D    L+
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLT 80

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Length = 267

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
          KGGVGK+T + IL+ LL++    VL+I  D 
Sbjct: 36 KGGVGKSTSAIILATLLSKNN-KVLLIDMDT 65

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Length = 286

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
          KGG GK+T +  L   L      V +I  D 
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Length = 257

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
          KGGVGKTT +  L+  LA +   VL++  DP  N +
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	100.0
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	100.0
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	100.0
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	100.0
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	100.0
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	100.0
3igf_A	374	ALL4481 protein; two-domained protein consisting o	100.0
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.95
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.95
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.94
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.93
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	99.92
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.92
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	99.92
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.91
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	99.91
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.91
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	99.91
3end_A	307	Light-independent protochlorophyllide reductase ir	99.91
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	99.91
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.9
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	99.9
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	99.9
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	99.89
3fwy_A	314	Light-independent protochlorophyllide reductase I	99.89
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.87
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.87
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	99.86
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	99.86
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.85
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.85
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.85
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.78
2xxa_A	433	Signal recognition particle protein; protein trans	99.62
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.51
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.47
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.43
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.42
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.33
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	99.33
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.29
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	99.29
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	99.27
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.25
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	99.2
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.14
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.98
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.31
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	98.23
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.02
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.0
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.0
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.99
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.94
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.77
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.72
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.7
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.63
3io5_A	333	Recombination and repair protein; storage dimer, i	97.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.58
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.57
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.45
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.43
2obn_A	349	Hypothetical protein; structural genomics, joint c	97.39
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.38
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.37
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.34
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.26
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.24
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.18
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.1
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.07
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	97.06
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.05
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.0
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.95
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.91
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.91
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.9
3bos_A	242	Putative DNA replication factor; P-loop containing	96.87
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.85
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.8
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.8
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.77
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.74
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.74
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.73
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.7
2og2_A	359	Putative signal recognition particle receptor; nuc	96.69
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.68
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.67
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.66
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.65
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.64
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.59
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.53
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.52
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.51
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.5
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.47
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.43
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.42
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.41
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.4
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.38
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.37
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.35
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.33
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.33
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.3
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.28
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.25
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.24
2qgz_A	308	Helicase loader, putative primosome component; str	96.2
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	96.16
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.16
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.16
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.16
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.13
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.12
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.08
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.07
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.05
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.04
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.97
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.95
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.95
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.94
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.92
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.89
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.88
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	95.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.81
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.8
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	95.76
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.75
2g0t_A	350	Conserved hypothetical protein; structural genomic	95.75
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.67
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.66
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.66
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.64
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.63
1via_A	175	Shikimate kinase; structural genomics, transferase	95.62
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.56
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.54
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.54
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.53
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.52
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.51
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.49
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.47
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.47
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.45
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.44
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.44
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.44
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.41
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.41
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.38
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.36
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.36
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.34
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.34
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.26
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	95.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.16
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.16
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.12
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.1
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.1
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.09
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.03
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.97
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	94.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.92
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.91
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.91
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.9
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.83
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.81
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.81
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.79
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	94.78
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.72
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	94.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.67
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	94.66
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.61
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.6
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.59
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.55
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.53
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.52
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.45
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.43
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.38
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.36
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.36
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.3
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.29
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.04
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.03
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	94.01
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	93.89
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.87
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.75
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	93.72
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.72
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.71
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.61
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	93.61
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.6
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.59
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.55
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.51
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.48
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.44
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.36
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	93.35
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.34
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.31
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.15
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.07
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	93.06
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.04
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	93.01
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.0
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.99
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	92.93
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	92.92
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.79
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	92.73
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.7
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.68
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.67
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	92.56
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	92.39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	92.29
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	92.23
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	92.22
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	92.22
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	92.07
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	92.04
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	92.03
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	92.02
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.0
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	91.99
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	91.94
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	91.93
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	91.9
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	91.89
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	91.82
2eyu_A	261	Twitching motility protein PILT; pilus retraction	91.81
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.79
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	91.77
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.76
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	91.76
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	91.73
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.72
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	91.56
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	91.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	91.41
2fna_A	357	Conserved hypothetical protein; structural genomic	91.24
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	91.23
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.19
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	91.1
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	91.07
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	91.06
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	90.96
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	90.95
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	90.92
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	90.73
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	90.68
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	90.67
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	90.65
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	90.57
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	90.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.46
2chq_A	319	Replication factor C small subunit; DNA-binding pr	90.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.43
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	90.39
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	90.36
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.21
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	90.19
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	90.13
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.08
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	90.02
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.02
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.0
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	89.88
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	89.78
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	89.77
3co5_A	143	Putative two-component system transcriptional RES	89.76
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	89.33
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	89.33
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.25
3pvs_A	447	Replication-associated recombination protein A; ma	89.24
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.21
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	89.15
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	89.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	89.02
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	89.01
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	89.0
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	88.96
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	88.92
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	88.78
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	88.59
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	88.57
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.53
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	88.33
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	88.33
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	88.29
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	88.17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.14
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	87.92
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	87.62
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	87.6
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	87.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.44
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	87.37
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	87.32
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	87.29
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	87.28
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	87.18
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	87.16
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	87.06
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	86.99
2ged_A	193	SR-beta, signal recognition particle receptor beta	86.95
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	86.75
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	86.67
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	86.63
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	86.61
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	86.56
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	86.54
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	86.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	86.51
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	86.36
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	86.33
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	86.08
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	86.06
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	86.05
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	86.01
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	85.99
4ehx_A	315	Tetraacyldisaccharide 4'-kinase; membrane protein,	85.97
3rsc_A	415	CALG2; TDP, enediyne, structural genomics, PSI-2,	85.88
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	85.73
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	85.47
1nrj_B	218	SR-beta, signal recognition particle receptor beta	85.34
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	85.27
3b6e_A	216	Interferon-induced helicase C domain-containing P;	85.13
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	85.05
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	84.96
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	84.9
3kta_A	182	Chromosome segregation protein SMC; structural mai	84.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	84.78
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	84.66
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	84.55
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	84.44
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	84.36
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	84.35
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	84.14
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	84.07
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	83.8
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	83.77
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	83.73
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	83.56
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	83.55
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	83.48
2wji_A	165	Ferrous iron transport protein B homolog; membrane	83.44
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	83.39
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	83.37
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	83.31
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	83.27
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	83.03
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	83.0
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	82.79
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	82.75
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	82.68
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	82.62
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	82.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	82.5
3ice_A	422	Transcription termination factor RHO; transcriptio	82.22
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	82.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	81.97
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	81.93
2l8b_A	189	Protein TRAI, DNA helicase I; RECD, hydrolase; NMR	81.84
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	81.72
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	81.55
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.2
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	81.19
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	81.07
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	80.92
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	80.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	80.83
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	80.8
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	80.77
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	80.74
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	80.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	80.66
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	80.54
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	80.48
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	80.42
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	80.28
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	80.24
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	80.19
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	80.07
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	80.05

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=100.00  E-value=8.9e-43  Score=310.40  Aligned_cols=259  Identities=55%  Similarity=0.899  Sum_probs=186.4

Q ss_pred             ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCcee
Q 023886           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA   93 (276)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~   93 (276)
                      .++++++++++++.++|+|+||||||||||+|+|||.++|+.|+||+|||+||+++++.+|+.+....++.+.+.+++..
T Consensus         2 ~l~~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~   81 (334)
T 3iqw_A            2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYA   81 (334)
T ss_dssp             CCCSSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCCSSCEECTTCSSEEE
T ss_pred             CccccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccCCCceeecCCCCcee
Confidence            57889999999999999999999999999999999999999999999999999999999999887766676666788888


Q ss_pred             eecCCcccc-cccC---------ccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHH
Q 023886           94 MEVDPSVEE-ETGS---------TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS  163 (276)
Q Consensus        94 ~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~  163 (276)
                      .++++.... ++..         ..++ .+..++....|+..+...+.++.+.+.+.+||||||||||++++++++.+|.
T Consensus        82 ~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~  160 (334)
T 3iqw_A           82 MEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPT  160 (334)
T ss_dssp             EECCC---------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHH
T ss_pred             eecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence            888877655 2211         0223 3334444556899998888888888876689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhcCCCC-CcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886          164 TLEKGLDKMMSLKNKFGGMINQMTRLFGIDD-EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (276)
Q Consensus       164 ~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~  242 (276)
                      .+.+|++++....+++.++.+++...+|..+ ..+.+.++++++..++.++++++.+.|+..+++++|++|+.+++.|++
T Consensus       161 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~  240 (334)
T 3iqw_A          161 VLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETE  240 (334)
T ss_dssp             HC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHH
Confidence            9999999999998888888888777665200 123345668889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcCeEEEccccCCCCCCCCC
Q 023886          243 RLVQELTKFEIDTHNIIINQVLYDDEGMHCN  273 (276)
Q Consensus       243 ~~~~~l~~~~~~~~g~vvN~~~~~~~~~~~~  273 (276)
                      ++++.|++.|+++.|+|+|+++.+++..+|+
T Consensus       241 r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~  271 (334)
T 3iqw_A          241 RMIQELANYGIDTHCIVVNQLLFPKPGSDCE  271 (334)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEECCCCTTCCCH
T ss_pred             HHHHHHHHCCCCccEEEECCCcCcccCCcCH
Confidence            9999999999999999999999655555553

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=100.00  E-value=1.7e-41  Score=303.56  Aligned_cols=253  Identities=49%  Similarity=0.842  Sum_probs=151.7

Q ss_pred             ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCc
Q 023886           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNL   91 (276)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l   91 (276)
                      .++++|+++++++.++|+|++|||||||||+|+|||.++|  +.|+||+|||+|++++++.+||.+....++.+.+.+++
T Consensus         4 ~l~~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~~~~~~v~~~~~L   83 (348)
T 3io3_A            4 ELEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNL   83 (348)
T ss_dssp             SCCSSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCCSSCEEETTEEEE
T ss_pred             ccchhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccCCCceeccCCCCc
Confidence            6889999999999999999999999999999999999999  89999999999999999999998877777777666788


Q ss_pred             eeeecCCcccc-cccC---------ccCcchHHHHHhccCCCchHHHHHHHHHHHhccC------------CCcEEEEcC
Q 023886           92 YAMEVDPSVEE-ETGS---------TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM------------DYSCIVFDT  149 (276)
Q Consensus        92 ~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------------~yD~IiiD~  149 (276)
                      ...++++.... ++..         ..++..+...+....|+..+...+.++++.+++.            +||||||||
T Consensus        84 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDt  163 (348)
T 3io3_A           84 SCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT  163 (348)
T ss_dssp             EEEECCC-----------------------------------------------------------------CCEEEEEC
T ss_pred             eEEeeCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcC
Confidence            88888877665 2211         1134444445555668888888888888888754            799999999


Q ss_pred             CCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 023886          150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC  229 (276)
Q Consensus       150 pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  229 (276)
                      ||++++++++.+|..+++|++++....+++.+++ ++...+      +.+.++..+...++.++++++.+.|+..+++++
T Consensus       164 pPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~------~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl  236 (348)
T 3io3_A          164 APTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGG------QQQDIFEKLNEVQKNVSEVNEQFTNPELTTFIC  236 (348)
T ss_dssp             SSHHHHHHHTC----------------------------------------------------CHHHHHHTCTTTEEEEE
T ss_pred             CCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccC------chHHHHHHHHHHHHHHHHHHHHHhCcCceEEEE
Confidence            9999999999999999999999988877776665 443332      245677888999999999999999999999999


Q ss_pred             EecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC-CCCCCC
Q 023886          230 VCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD-EGMHCN  273 (276)
Q Consensus       230 V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~-~~~~~~  273 (276)
                      |++|+.+++.++.++++.|+++|+++.|+|+||++++. +..+|+
T Consensus       237 Vt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~  281 (348)
T 3io3_A          237 VCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCK  281 (348)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CH
T ss_pred             EecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCH
Confidence            99999999999999999999999999999999999876 334453

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=100.00  E-value=9.1e-40  Score=293.40  Aligned_cols=262  Identities=39%  Similarity=0.671  Sum_probs=208.6

Q ss_pred             chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCccee
Q 023886            7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV   85 (276)
Q Consensus         7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~   85 (276)
                      +-.|+|+.+++++..+.. .++++|+|+|+||||||||+|+|||.++|+.|+||||||+|++++++..|+.+....++.+
T Consensus         4 ~~~E~~r~lrt~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v   83 (349)
T 3ug7_A            4 KIKDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKV   83 (349)
T ss_dssp             ------CTTHHHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEEC
T ss_pred             HHHHHHHHHhhhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccc
Confidence            456899999999998875 4567778999999999999999999999999999999999999999999999877666666


Q ss_pred             ccCCCceeeecCCcccc-ccc----C-ccCc----chHHH--HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCch
Q 023886           86 NGFSNLYAMEVDPSVEE-ETG----S-TEGM----DSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG  153 (276)
Q Consensus        86 ~~~~~l~~~~~~~~~~~-~~~----~-~~~~----~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~  153 (276)
                      .+..++...++++...+ ++.    . ...+    ..+..  +.....|+..+...+.++.+.+++.+||||||||||++
T Consensus        84 ~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~  163 (349)
T 3ug7_A           84 KGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTG  163 (349)
T ss_dssp             TTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCT
T ss_pred             ccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCCh
Confidence            66778887777766544 110    0 0000    11111  12335688888888888888887668999999999999


Q ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhc---CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 023886          154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV  230 (276)
Q Consensus       154 ~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V  230 (276)
                      ++++++.+|..+.+|++++++...++......+..+.   |....++.+.+++.+...++.++++++.+.|+..+++++|
T Consensus       164 ~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV  243 (349)
T 3ug7_A          164 HTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLV  243 (349)
T ss_dssp             TGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence            9999999999999999999998887776666554432   2112344567778999999999999999999999999999


Q ss_pred             ecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886          231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       231 ~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~  268 (276)
                      ++|+..++.++.++++.+++.|+++.|+|+|++.+..+
T Consensus       244 ~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~  281 (349)
T 3ug7_A          244 VIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV  281 (349)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred             ECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccC
Confidence            99999999999999999999999999999999988754

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.6e-39  Score=286.72  Aligned_cols=254  Identities=58%  Similarity=0.984  Sum_probs=198.8

Q ss_pred             hccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCC
Q 023886           11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN   90 (276)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~   90 (276)
                      +|+.++++|+.+.+++.++|+|+||||||||||+|+|||.++|+.|+||++||+|++++++..|+.+....+....+..+
T Consensus         2 ~~r~lr~~l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~~~~~~~g~~~   81 (329)
T 2woo_A            2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDN   81 (329)
T ss_dssp             -----CCSTHHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCSSCEECTTCSS
T ss_pred             CcchhhccHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCCCCeeccCCCC
Confidence            58899999999998888999999999999999999999999999999999999999999999999876544544456677


Q ss_pred             ceeeecCCcccc-cc----cCc-c--CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhH
Q 023886           91 LYAMEVDPSVEE-ET----GST-E--GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP  162 (276)
Q Consensus        91 l~~~~~~~~~~~-~~----~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip  162 (276)
                      +...++++...+ ++    ... .  -+......+....|+..+...+.++.+.+++.+||||||||||++++++++.+|
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p  161 (329)
T 2woo_A           82 LSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFP  161 (329)
T ss_dssp             EEEEECCHHHHHHHHHHTC--------CCHHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHH
T ss_pred             eeEEecCHHHHHHHHHHHHhhhhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHH
Confidence            776666655433 11    110 0  011111233556688888888899998888558999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886          163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (276)
Q Consensus       163 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~  242 (276)
                      ..+++|++++.++.+++..+...+...+|.  .++.+.+...++..++.++++++.+.|+..+++++|++|+..++.++.
T Consensus       162 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~--~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~  239 (329)
T 2woo_A          162 TVLEKALGKLGGLSSRFGPMINQMGSIMGV--NANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETE  239 (329)
T ss_dssp             HHHHHHHHHHHTSCSSCHHHHHHHHHHHC-------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHH
Confidence            999999999987766665555554444442  222233456788889999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcCeEEEccccCC
Q 023886          243 RLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       243 ~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      ++++.|++.|+++.|+|+|++..+
T Consensus       240 ~~~~~L~~~gi~v~gvVvN~~~~p  263 (329)
T 2woo_A          240 RMIQELTSYEIDTHNIVVNQLLLD  263 (329)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEECCC
T ss_pred             HHHHHHHHCCCCCCEEEEeCCcCc
Confidence            999999999999999999999833

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=3.6e-37  Score=273.99  Aligned_cols=248  Identities=40%  Similarity=0.694  Sum_probs=191.2

Q ss_pred             hhhhhcC-Cc-eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeec
Q 023886           19 VRNILEQ-DS-LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEV   96 (276)
Q Consensus        19 l~~~~~~-~~-~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~   96 (276)
                      |+..+.. ++ ++|+|+|+||||||||+|+|||.++|+.|+|||+||+|++++++..|+.+....+..+  .+++....+
T Consensus         3 i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v--~~~l~~~~~   80 (324)
T 3zq6_A            3 FKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI--TENLYAVEI   80 (324)
T ss_dssp             GGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE--ETTEEEEEC
T ss_pred             hhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC--CCCceeecc
Confidence            4444432 33 6888999999999999999999999999999999999999999999998765444332  356666666


Q ss_pred             CCcccc-c----ccC------ccCcchHHHH--HhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHH
Q 023886           97 DPSVEE-E----TGS------TEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS  163 (276)
Q Consensus        97 ~~~~~~-~----~~~------~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~  163 (276)
                      ++...+ +    +..      ..++..+...  .....|+..+...+.++.+.+++.+||||||||||++++++++.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~  160 (324)
T 3zq6_A           81 DPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPE  160 (324)
T ss_dssp             CHHHHHHHHHHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHH
Confidence            665443 1    100      0111222211  23356788888888888887776689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhhhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886          164 TLEKGLDKMMSLKNKFGGMINQMTRLFGID-DEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE  242 (276)
Q Consensus       164 ~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~  242 (276)
                      .+.+|++++++...+.......+..++... ...+.+.+++.+...++.++++++.+.|+..+++++|++|+..++.++.
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~  240 (324)
T 3zq6_A          161 IMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESE  240 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHH
Confidence            999999999998887776655554432210 0011146678889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcCeEEEccccCCCC
Q 023886          243 RLVQELTKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       243 ~~~~~l~~~~~~~~g~vvN~~~~~~~  268 (276)
                      ++++.|++.|+++.|+|+|++.+...
T Consensus       241 ~~~~~l~~~gi~v~gvV~N~~~~~~~  266 (324)
T 3zq6_A          241 RAMKALEKYSIHADGVIVNQVLPEES  266 (324)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred             HHHHHHHHCCCCccEEEEcCCccccC
Confidence            99999999999999999999988753

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=100.00  E-value=1.2e-37  Score=279.85  Aligned_cols=246  Identities=48%  Similarity=0.844  Sum_probs=190.5

Q ss_pred             cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCce
Q 023886           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY   92 (276)
Q Consensus        15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~   92 (276)
                      +.++|+++++++.++|+|+||||||||||+|+|||.+||  +.|+||+|||+|++++++..||.+....++.+.++.++.
T Consensus         5 ~~~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~~~~~~v~gl~~l~   84 (354)
T 2woj_A            5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS   84 (354)
T ss_dssp             CCSSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCCSSCEECTTCSSEE
T ss_pred             cCccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCCCCceeecCCCceE
Confidence            557788888888889999999999999999999999999  899999999999999999999998766666666777888


Q ss_pred             eeecCCcccc-cc----cCc----------cCcc-----hHHHHHhccCCCchHHHHHHHHHHHhccC------CCcEEE
Q 023886           93 AMEVDPSVEE-ET----GST----------EGMD-----SLFSELANAIPGIDEAMSFAEMLKLVQTM------DYSCIV  146 (276)
Q Consensus        93 ~~~~~~~~~~-~~----~~~----------~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------~yD~Ii  146 (276)
                      ..++++...+ ++    ...          .++.     ....++....|+..+...|.++++.+++.      +|||||
T Consensus        85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~II  164 (354)
T 2woj_A           85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVI  164 (354)
T ss_dssp             EEECCHHHHHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEE
T ss_pred             EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence            7777765443 21    110          0111     22244555678888888999999988752      699999


Q ss_pred             EcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 023886          147 FDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT  226 (276)
Q Consensus       147 iD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (276)
                      |||||++++++++.+|..+++|++++.+..+.+.+++..+..+ +      ...++..+...++.++++++.+.++..+.
T Consensus       165 iDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~~L~d~~~~~  237 (354)
T 2woj_A          165 FDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-G------NVDISGKLNELKANVETIRQQFTDPDLTT  237 (354)
T ss_dssp             EECCCHHHHHHHHTHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHTCTTTEE
T ss_pred             ECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C------hHHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence            9999999999999999999999999887777665544332221 1      12356788889999999999999999999


Q ss_pred             EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc-CCC
Q 023886          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL-YDD  267 (276)
Q Consensus       227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~-~~~  267 (276)
                      +++|++|+.+++.++.++++.|++.|+++.|+|+|++. +..
T Consensus       238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~  279 (354)
T 2woj_A          238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAEN  279 (354)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC-
T ss_pred             EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCccc
Confidence            99999999999999999999999999999999999998 544

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=100.00  E-value=1.4e-36  Score=273.47  Aligned_cols=230  Identities=19%  Similarity=0.268  Sum_probs=176.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-c---
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E---  103 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~---  103 (276)
                      ++|++++|||||||||+|+|||..+|+.|+|||+||+ |+++++..|+.+....++.+  .+++...++++.... +   
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v--~~~L~~~eid~~~~~~~~~~   78 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQI--APNLEVVQFQSSVLLERNWE   78 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEE--ETTEEEEECCHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCcccc--cccccccccCHHHHHHHHHH
Confidence            5789999999999999999999999999999999999 99999999998765554443  367888877765443 1   


Q ss_pred             --------ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886          104 --------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL  175 (276)
Q Consensus       104 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~  175 (276)
                              .....++..+..+.....|++++...+.++.+.+++.+||||||||||++++++++.+|..+.+|+++++++
T Consensus        79 ~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~~  158 (374)
T 3igf_A           79 EVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQL  158 (374)
T ss_dssp             HHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHHH
Confidence                    111223333444455667899998888888888776789999999999999999999999999999998777


Q ss_pred             HHHH--------hhhHhhhhh-hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886          176 KNKF--------GGMINQMTR-LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ  246 (276)
Q Consensus       176 ~~~~--------~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~  246 (276)
                      .++.        .+.+.++.. ..|.  .++.+.+++.+...++.++++++.+.|+..+++++|++|+.+++.|+.++++
T Consensus       159 ~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~~  236 (374)
T 3igf_A          159 FVNSDLGKTIAESPLIQPLISSFFNV--NWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWG  236 (374)
T ss_dssp             C-------------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHHH
T ss_pred             HhhhccccccccchhhhhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHHH
Confidence            6662        333444432 2332  3445667788889999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcCeEEEcc
Q 023886          247 ELTKFEIDTHNIIINQ  262 (276)
Q Consensus       247 ~l~~~~~~~~g~vvN~  262 (276)
                      .+++.|+++.|+|+||
T Consensus       237 ~L~~~gi~v~gvVvN~  252 (374)
T 3igf_A          237 SAQQIGLTIGGVIQVS  252 (374)
T ss_dssp             HHHHHTCCEEEEEECC
T ss_pred             HHHHcCCCccEEEEcC
Confidence            9999999999999999

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.95  E-value=2.1e-28  Score=233.82  Aligned_cols=220  Identities=32%  Similarity=0.465  Sum_probs=154.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET  104 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  104 (276)
                      .+++++|++|||||||||+|+|||.++|+.|+|||+||+|++++++..|+.+....+..+.+..++...++++.... ++
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~   85 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY   85 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999877655555555567777666654332 10


Q ss_pred             -----cCccCcc------hHHHHHhccCCCchH---HHHHHHHHH--HhccCCCcEEEEcCCCchhHHHhhhhHHHHHHH
Q 023886          105 -----GSTEGMD------SLFSELANAIPGIDE---AMSFAEMLK--LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKG  168 (276)
Q Consensus       105 -----~~~~~~~------~~~~~~~~~~~~~~~---~~~l~~~l~--~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~  168 (276)
                           ....++.      .+...+..  ++..+   ...+.++++  .++. +||||||||||+++.++++.+|..+.++
T Consensus        86 ~~~~~~~~~~~lp~~~~~~~~~~l~~--~~~~e~~~~~~~~~ll~~~~l~~-~yD~VIiDt~P~~~~lrll~lP~~~~~~  162 (589)
T 1ihu_A           86 RARIVDPIKGVLPDDVVSSINEQLSG--ACTTEIAAFDEFTGLLTDASLLT-RFDHIIFDTAPTGHTIRLLQLPGAWSSF  162 (589)
T ss_dssp             HHHHHGGGTTTSCHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHCTTHHH-HCSEEEESSCCCHHHHHHHHCGGGGTCC
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHhcc--cchHHHHHHHHHHHHHhchhhcc-cCCEEEECCCCchhHHHHHHhHHHHHHH
Confidence                 0001110      01111110  11112   234556666  4554 7999999999999999999999877655


Q ss_pred             HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886          169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL  248 (276)
Q Consensus       169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l  248 (276)
                      +.+...-    ...+.+   ..|.             ...++.+.++.+.+.|+..+.+++|++|+..++.++.++++.|
T Consensus       163 l~~~~~~----~~~l~~---~~~l-------------~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L  222 (589)
T 1ihu_A          163 IDSNPEG----ASCLGP---MAGL-------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLEL  222 (589)
T ss_dssp             C----------CCCCGG---GGGC-------------CSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHhhcc----ccccch---hhhh-------------hHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHH
Confidence            5443110    000111   1111             1123455677888889888899999999999999999999999


Q ss_pred             hhCCCCcCeEEEccccCCCC
Q 023886          249 TKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       249 ~~~~~~~~g~vvN~~~~~~~  268 (276)
                      ++.|+++.|+|+|++.+..+
T Consensus       223 ~~~g~~~~gvVlN~v~~~~~  242 (589)
T 1ihu_A          223 AAIGLKNQYLVINGVLPKTE  242 (589)
T ss_dssp             HHHTCCCEEEEEEEECCGGG
T ss_pred             HhCCCCCCEEEEcCCcCccc
Confidence            99999999999999987654

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.95  E-value=2.6e-27  Score=206.75  Aligned_cols=192  Identities=15%  Similarity=0.153  Sum_probs=134.1

Q ss_pred             chhhhccccccchhhhh-cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcce
Q 023886            7 DQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTL   84 (276)
Q Consensus         7 ~~~~~~~~~~~~l~~~~-~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~   84 (276)
                      +..|+|+.+|++|.... +.+++.|+|+|+|||+||||+|+|||..||+.|+||||||+|++ ++++..|+.+...  .+
T Consensus        71 ~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--gl  148 (286)
T 3la6_A           71 LAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN--GL  148 (286)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT--CH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCC--CH
Confidence            35789999999998864 44556777999999999999999999999999999999999997 6799999876432  11


Q ss_pred             eccCC---Ccee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886           85 VNGFS---NLYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (276)
Q Consensus        85 ~~~~~---~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~  159 (276)
                      .+.+.   .+.. ........+++ +....... +.++..       ...|.++++.+++ +||||||||||.+...+..
T Consensus       149 ~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~da~  219 (286)
T 3la6_A          149 SEILIGQGDITTAAKPTSIAKFDLIPRGQVPPN-PSELLM-------SERFAELVNWASK-NYDLVLIDTPPILAVTDAA  219 (286)
T ss_dssp             HHHHHTSSCTTTTCEECSSTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH
T ss_pred             HHHccCCCCHHHheeccCCCCEEEEeCCCCCCC-HHHHhc-------hHHHHHHHHHHHh-CCCEEEEcCCCCcchHHHH
Confidence            11000   0000 00000011111 11111111 111111       2478889999987 8999999999974422111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (276)
Q Consensus       160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~  239 (276)
                      .+                                                           ....+.+++|+.++.++..
T Consensus       220 ~l-----------------------------------------------------------~~~aD~vllVv~~~~~~~~  240 (286)
T 3la6_A          220 IV-----------------------------------------------------------GRHVGTTLMVARYAVNTLK  240 (286)
T ss_dssp             HH-----------------------------------------------------------TTTCSEEEEEEETTTSBHH
T ss_pred             HH-----------------------------------------------------------HHHCCeEEEEEeCCCCcHH
Confidence            11                                                           1235779999999999999


Q ss_pred             HHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886          240 ETERLVQELTKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       240 ea~~~~~~l~~~~~~~~g~vvN~~~~~~~  268 (276)
                      ++.++.+.+++.+.++.|+|+|++.+...
T Consensus       241 ~~~~~~~~l~~~g~~~~GvVlN~v~~~~~  269 (286)
T 3la6_A          241 EVETSLSRFEQNGIPVKGVILNSIFRRAS  269 (286)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence            99999999999999999999999976553

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.94  E-value=2.7e-26  Score=198.85  Aligned_cols=193  Identities=15%  Similarity=0.120  Sum_probs=130.2

Q ss_pred             cchhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcc
Q 023886            6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT   83 (276)
Q Consensus         6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~   83 (276)
                      .+..|+|+.+|++|..... ++++.|+|+|.|||+||||+|+|||..||+.|+||||||+|++ ++++..|+.....  .
T Consensus        60 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--g  137 (271)
T 3bfv_A           60 SPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNE--G  137 (271)
T ss_dssp             SHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSS--S
T ss_pred             CHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCC--C
Confidence            3457899999999988754 4445666999999999999999999999999999999999987 5788888875431  1


Q ss_pred             eeccCC---Ccee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHh
Q 023886           84 LVNGFS---NLYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL  158 (276)
Q Consensus        84 ~~~~~~---~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~  158 (276)
                      +.+.+.   .+.. ........+++ +....... +.++..       ...+.++++.+++ +||||||||||.+.....
T Consensus       138 l~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~  208 (271)
T 3bfv_A          138 LSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPN-PSELIT-------SRAFANLYDTLLM-NYNFVIIDTPPVNTVTDA  208 (271)
T ss_dssp             HHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCSHH
T ss_pred             HHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCC-HHHHhC-------hHHHHHHHHHHHh-CCCEEEEeCCCCchHHHH
Confidence            111110   0000 00000011111 11111111 111111       1367888999986 899999999997442211


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccH
Q 023886          159 LQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL  238 (276)
Q Consensus       159 ~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~  238 (276)
                      ..+.                                                           ...+.+++|+.++..++
T Consensus       209 ~~l~-----------------------------------------------------------~~aD~vilVv~~~~~~~  229 (271)
T 3bfv_A          209 QLFS-----------------------------------------------------------KFTGNVVYVVNSENNNK  229 (271)
T ss_dssp             HHHH-----------------------------------------------------------HHHCEEEEEEETTSCCH
T ss_pred             HHHH-----------------------------------------------------------HHCCEEEEEEeCCCCcH
Confidence            1110                                                           01256899999999999


Q ss_pred             HHHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886          239 YETERLVQELTKFEIDTHNIIINQVLYDDE  268 (276)
Q Consensus       239 ~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~  268 (276)
                      .++.++.+.+++.++++.|+|+|++.+...
T Consensus       230 ~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~  259 (271)
T 3bfv_A          230 DEVKKGKELIEATGAKLLGVVLNRMPKDKS  259 (271)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEEEEEECC---
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCcCCCC
Confidence            999999999999999999999999976543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.93  E-value=4.1e-26  Score=200.48  Aligned_cols=191  Identities=17%  Similarity=0.138  Sum_probs=131.2

Q ss_pred             chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcce
Q 023886            7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTL   84 (276)
Q Consensus         7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~   84 (276)
                      +..|+|+.++++|..... .+++.|+|+|.|||+||||+|+|||..||+.|+||||||+|+ +++++.+|+.....  .+
T Consensus        83 ~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~--gl  160 (299)
T 3cio_A           83 SAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH--GL  160 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSS--SH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCC--CH
Confidence            346899999999987754 444666699999999999999999999999999999999999 58899999875431  11


Q ss_pred             eccCCC---cee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886           85 VNGFSN---LYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL  159 (276)
Q Consensus        85 ~~~~~~---l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~  159 (276)
                      .+.+.+   +.. ........+++ +....... +.++..       ...+.++++.+++ +||||||||||.+...+..
T Consensus       161 ~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~  231 (299)
T 3cio_A          161 SEYLAGKDELNKVIQHFGKGGFDVITRGQVPPN-PSELLM-------RDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA  231 (299)
T ss_dssp             HHHHTTSSCHHHHCEEETTTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH
T ss_pred             HHHCcCCCCHHHhhhccCCCCEEEEECCCCCCC-HHHHhC-------HHHHHHHHHHHHh-CCCEEEEcCCCCchhHHHH
Confidence            111100   000 00000011111 11111111 111111       2467888999986 8999999999974321111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886          160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY  239 (276)
Q Consensus       160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~  239 (276)
                      .+                                                           ....+.+++|+.++..++.
T Consensus       232 ~l-----------------------------------------------------------~~~ad~vilV~~~~~~~~~  252 (299)
T 3cio_A          232 VV-----------------------------------------------------------GRSVGTSLLVARFGLNTAK  252 (299)
T ss_dssp             HH-----------------------------------------------------------GGGCSEEEEEEETTTSCTT
T ss_pred             HH-----------------------------------------------------------HHHCCEEEEEEcCCCChHH
Confidence            00                                                           0123678999999999999


Q ss_pred             HHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886          240 ETERLVQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       240 ea~~~~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                      ++.+..+.+++.++++.|+|+|++.+..
T Consensus       253 ~~~~~~~~l~~~~~~~~GvVlN~~~~~~  280 (299)
T 3cio_A          253 EVSLSMQRLEQAGVNIKGAILNGVIKRA  280 (299)
T ss_dssp             HHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence            9999999999999999999999997653

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=99.92  E-value=7.6e-26  Score=192.71  Aligned_cols=176  Identities=15%  Similarity=0.142  Sum_probs=114.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceec--cCCCceeeecC------Cc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN--GFSNLYAMEVD------PS   99 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~--~~~~l~~~~~~------~~   99 (276)
                      |+|+| |+||||||||+|+|||.+||++|+||++||+|+|++++.+||...........  .+.++......      ..
T Consensus         1 mkI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (254)
T 3kjh_A            1 MKLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN   79 (254)
T ss_dssp             CEEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred             CEEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence            46778 89999999999999999999999999999999999999999875432100000  00000000000      00


Q ss_pred             ccc-cccCc-----cCcch-HHHHHh-ccCCCc--hHHHHHHHHHHHh-ccCCCcEEEEcCCCchhHHHhhhhHHHHHHH
Q 023886          100 VEE-ETGST-----EGMDS-LFSELA-NAIPGI--DEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKG  168 (276)
Q Consensus       100 ~~~-~~~~~-----~~~~~-~~~~~~-~~~~~~--~~~~~l~~~l~~l-~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~  168 (276)
                      ..+ .+++.     .++.. ++.... ....+.  .+...+.++++.+ ++ +||||||||||+++..+..++       
T Consensus        80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yD~viiD~pp~~~~~~~~~l-------  151 (254)
T 3kjh_A           80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD-KKEAVVMDMGAGIEHLTRGTA-------  151 (254)
T ss_dssp             CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT-CCSEEEEEECTTCTTCCHHHH-------
T ss_pred             CchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC-CCCEEEEeCCCcccHHHHHHH-------
Confidence            000 01111     01111 100000 000011  1224688999998 75 999999999998654332222       


Q ss_pred             HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886          169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL  248 (276)
Q Consensus       169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l  248 (276)
                                                                           ...+.+++|+.|+..++..+.++.+.+
T Consensus       152 -----------------------------------------------------~~aD~viiv~~~~~~s~~~~~~~~~~~  178 (254)
T 3kjh_A          152 -----------------------------------------------------KAVDMMIAVIEPNLNSIKTGLNIEKLA  178 (254)
T ss_dssp             -----------------------------------------------------TTCSEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------HHCCEEEEecCCCHHHHHHHHHHHHHH
Confidence                                                                 124679999999999999999999999


Q ss_pred             hhCCCCcCeEEEccccC
Q 023886          249 TKFEIDTHNIIINQVLY  265 (276)
Q Consensus       249 ~~~~~~~~g~vvN~~~~  265 (276)
                      ++.+++..++|+|++.+
T Consensus       179 ~~~~~~~~~~v~N~~~~  195 (254)
T 3kjh_A          179 GDLGIKKVRYVINKVRN  195 (254)
T ss_dssp             HHHTCSCEEEEEEEECC
T ss_pred             HHcCCccEEEEEeCCCC
Confidence            99999888999999864

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.92  E-value=7.3e-25  Score=209.27  Aligned_cols=207  Identities=27%  Similarity=0.403  Sum_probs=128.2

Q ss_pred             chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceee
Q 023886           18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM   94 (276)
Q Consensus        18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~   94 (276)
                      .++.+++   ....+++++++|||+||||+|+|||..+++.|+||++||+||+++++..|+...          .++...
T Consensus       314 ~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~~----------~~l~~~  383 (589)
T 1ihu_A          314 SLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSL----------NNLQVS  383 (589)
T ss_dssp             CHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---------------------CCEEEE
T ss_pred             hhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhcccC----------CCceee
Confidence            3444443   345678899999999999999999999999999999999999999999987632          122222


Q ss_pred             ecCCcccc-----cc-cC-ccCcch--HHH-HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           95 EVDPSVEE-----ET-GS-TEGMDS--LFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        95 ~~~~~~~~-----~~-~~-~~~~~~--~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      .+++....     .+ .. ...+..  ... ......|+..+...+.++.+.+++.+||||||||||++++++++.+|..
T Consensus       384 ~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~  463 (589)
T 1ihu_A          384 RIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGA  463 (589)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC--
T ss_pred             ecchHHHHHHHHHHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHH
Confidence            22221111     00 00 011111  000 0011224444555666666666544799999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                      +.+.+.+...          ...                       .+.++...+.|+..+.+++|++|+..++.++.++
T Consensus       464 ~~~~~~~~~~----------~~~-----------------------~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~  510 (589)
T 1ihu_A          464 YHREIAKKMG----------EKG-----------------------HFTTPMMLLQDPERTKVLLVTLPETTPVLEAANL  510 (589)
T ss_dssp             -------------------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHhcc----------cch-----------------------HHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHH
Confidence            5432221100          000                       1122334556788899999999999999999999


Q ss_pred             HHHHhhCCCCcCeEEEccccCCC
Q 023886          245 VQELTKFEIDTHNIIINQVLYDD  267 (276)
Q Consensus       245 ~~~l~~~~~~~~g~vvN~~~~~~  267 (276)
                      ++.|++.|+++.|+|+|++.+..
T Consensus       511 ~~~l~~~g~~~~gvVvN~~~~~~  533 (589)
T 1ihu_A          511 QADLERAGIHPWGWIINNSLSIA  533 (589)
T ss_dssp             HHHHHHTTCCCCEEEEEEESTTS
T ss_pred             HHHHHHCCCCCCEEEEeCCcCCC
Confidence            99999999999999999998764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=99.92  E-value=9.8e-26  Score=191.72  Aligned_cols=171  Identities=18%  Similarity=0.246  Sum_probs=115.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeee--------
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAME--------   95 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~--------   95 (276)
                      .++.|+|+|+||||||||+|+|||.+||+. |+||++||+|+| ++++.+|+.... ..++.+.+.+.....        
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~   81 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTH-SQDLADISNASDRLDKSLLDTMV   81 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCC-SCCHHHHHHTGGGCCHHHHHHHS
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCC-CCCHHHHHhhHhhhhHHHHHHHh
Confidence            345677999999999999999999999998 999999999999 999999853211 111111111000000        


Q ss_pred             cCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHH
Q 023886           96 VDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS  174 (276)
Q Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~  174 (276)
                      ......+++ +.........    ..     ....+.++++.+++ +||||||||||+.+......+             
T Consensus        82 ~~~~~~l~~l~~~~~~~~~~----~~-----~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~~~~~l-------------  138 (245)
T 3ea0_A           82 QHISPSLDLIPSPATFEKIV----NI-----EPERVSDLIHIAAS-FYDYIIVDFGASIDHVGVWVL-------------  138 (245)
T ss_dssp             EEEETTEEEECCCSSHHHHH----HC-----CHHHHHHHHHHHHH-HCSEEEEEEESSCCTTHHHHG-------------
T ss_pred             EecCCCeEEEcCCCChHhhh----cC-----CHHHHHHHHHHHHh-hCCEEEEeCCCCCchHHHHHH-------------
Confidence            000001111 2222211111    00     12367888888886 899999999998654322221             


Q ss_pred             HHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC--
Q 023886          175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--  252 (276)
Q Consensus       175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~--  252 (276)
                                                                     ...+.+++|+.|+..++..+.++.+.+++.+  
T Consensus       139 -----------------------------------------------~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~  171 (245)
T 3ea0_A          139 -----------------------------------------------EHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKP  171 (245)
T ss_dssp             -----------------------------------------------GGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSC
T ss_pred             -----------------------------------------------HHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCC
Confidence                                                           1236789999999999999999999999887  


Q ss_pred             CCcCeEEEccccCCC
Q 023886          253 IDTHNIIINQVLYDD  267 (276)
Q Consensus       253 ~~~~g~vvN~~~~~~  267 (276)
                      ....|+|+|++.+..
T Consensus       172 ~~~~~~v~N~~~~~~  186 (245)
T 3ea0_A          172 ISRIEIILNRADTNS  186 (245)
T ss_dssp             CSCEEEEEESTTSCT
T ss_pred             ccceEEEEecCCCCC
Confidence            566899999997654

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.91  E-value=7.6e-24  Score=182.48  Aligned_cols=176  Identities=18%  Similarity=0.160  Sum_probs=113.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET  104 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  104 (276)
                      .++.|+|+|+||||||||+|+|||.+||+.|+||++||+|+|. +++.+|+.....  . ......+.... .....+++
T Consensus        17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~--~-~~~~~~~~~~~-~~~~~l~v   92 (262)
T 2ph1_A           17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNAR--I-AVSAEGLEPVL-TQKYGIKV   92 (262)
T ss_dssp             CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCC--C-EEETTEEECEE-CTTTCCEE
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcc--c-cccccCccccc-cCCCCeEE
Confidence            3467789999999999999999999999999999999999997 578888865431  0 00001110000 00011111


Q ss_pred             -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                       +....+......+  ...+......+.++++.++..+||||||||||+.+.......                      
T Consensus        93 lp~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~----------------------  148 (262)
T 2ph1_A           93 MSMQFLLPKENTPV--IWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVM----------------------  148 (262)
T ss_dssp             ECGGGGSTTCSSCC--CCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHH----------------------
T ss_pred             EeccccCCCcccch--hhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHH----------------------
Confidence             1111110000000  001112345677888877623899999999998542110000                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                                                       ..   ...+.+++|+.|+..++..+.+.++.+++.++++.|+|+|++
T Consensus       149 ---------------------------------~~---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~  192 (262)
T 2ph1_A          149 ---------------------------------QD---AKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMS  192 (262)
T ss_dssp             ---------------------------------HH---HCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred             ---------------------------------hh---ccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence                                             00   013668999999999999999999999999999999999998


Q ss_pred             cC
Q 023886          264 LY  265 (276)
Q Consensus       264 ~~  265 (276)
                      .+
T Consensus       193 ~~  194 (262)
T 2ph1_A          193 YF  194 (262)
T ss_dssp             CE
T ss_pred             cc
Confidence            53

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=99.91  E-value=5.4e-24  Score=183.68  Aligned_cols=182  Identities=16%  Similarity=0.164  Sum_probs=111.7

Q ss_pred             cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC------CcceeccC
Q 023886           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK------TPTLVNGF   88 (276)
Q Consensus        15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~------~~~~~~~~   88 (276)
                      .+.....+-.++++.|+|+|+||||||||+|+|||.+|| +|+||++||+|+|++++.+++.....      ...+.+.+
T Consensus        15 ~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   93 (267)
T 3k9g_A           15 QTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEIL   93 (267)
T ss_dssp             -----------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHH
T ss_pred             hhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHh
Confidence            344455555566677779999999999999999999999 99999999999999988887543210      11111100


Q ss_pred             CC---ceeeecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886           89 SN---LYAMEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST  164 (276)
Q Consensus        89 ~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~  164 (276)
                      .+   +...-......+++ +....+.......   .+  .....+.++++.++. +||||||||||+.+.....++   
T Consensus        94 ~~~~~~~~~i~~~~~~l~~lp~~~~~~~~~~~~---~~--~~~~~l~~~l~~l~~-~yD~viiD~pp~~~~~~~~~l---  164 (267)
T 3k9g_A           94 KENVDIDSTIINVDNNLDLIPSYLTLHNFSEDK---IE--HKDFLLKTSLGTLYY-KYDYIVIDTNPSLDVTLKNAL---  164 (267)
T ss_dssp             TTSSCGGGGCEEEETTEEEECCCGGGGGTTTCC---CT--TGGGHHHHHHHTTCT-TCSEEEEEECSSCSHHHHHHH---
T ss_pred             cCCCCHHHhhccCCCCEEEEeCChHHHHHHHhh---hh--hHHHHHHHHHHHhhc-CCCEEEEECcCCccHHHHHHH---
Confidence            00   00000000001111 2221111111000   00  123467888998886 899999999998665433332   


Q ss_pred             HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886          165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL  244 (276)
Q Consensus       165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~  244 (276)
                                                                              . ..+.+++|+.|+..++..+.++
T Consensus       165 --------------------------------------------------------~-~aD~vivv~~~~~~s~~~~~~~  187 (267)
T 3k9g_A          165 --------------------------------------------------------L-CSDYVIIPMTAEKWAVESLDLF  187 (267)
T ss_dssp             --------------------------------------------------------T-TCSEEEEEEESCTTHHHHHHHH
T ss_pred             --------------------------------------------------------H-HCCeEEEEeCCChHHHHHHHHH
Confidence                                                                    0 2467999999999999999999


Q ss_pred             HHHHhhCCCCc-CeEEEccc
Q 023886          245 VQELTKFEIDT-HNIIINQV  263 (276)
Q Consensus       245 ~~~l~~~~~~~-~g~vvN~~  263 (276)
                      .+.+++.+... .++|+|++
T Consensus       188 ~~~l~~~~~~~~~~vv~N~~  207 (267)
T 3k9g_A          188 NFFVRKLNLFLPIFLIITRF  207 (267)
T ss_dssp             HHHHHTTTCCCCEEEEEEEE
T ss_pred             HHHHHHHhccCCEEEEEecc
Confidence            99999886532 37999999

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.91  E-value=4.2e-24  Score=187.23  Aligned_cols=186  Identities=22%  Similarity=0.243  Sum_probs=118.9

Q ss_pred             hhhhhcCCceEEEEEe--CCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCC---cceeccCC--Cc
Q 023886           19 VRNILEQDSLKWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKT---PTLVNGFS--NL   91 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s--~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~---~~~~~~~~--~l   91 (276)
                      +++++....+.|+|++  +||||||||+|+|||..||+.|+||++||+|+|++++.+++......   .++.+.+.  .+
T Consensus        26 ~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~  105 (298)
T 2oze_A           26 LRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNL  105 (298)
T ss_dssp             HHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCC
T ss_pred             HHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCCh
Confidence            3444444556778888  89999999999999999999999999999999999887775332211   11111100  00


Q ss_pred             eeeecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHH
Q 023886           92 YAMEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD  170 (276)
Q Consensus        92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~  170 (276)
                      ...-......+++ ++...+... ..+...+........+.++++.++. +||||||||||+++..+..++-        
T Consensus       106 ~~~~~~~~~~l~vlp~~~~~~~~-~~l~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~~~l~--------  175 (298)
T 2oze_A          106 ASSIVHLTDNLDLIPGTFDLMLL-PKLTRSWTFENESRLLATLLAPLKS-DYDLIIIDTVPTPSVYTNNAIV--------  175 (298)
T ss_dssp             GGGCEESSSSEEEECCCGGGGGH-HHHTTTSCHHHHHTHHHHHHGGGGG-GCSEEEEEECSSCSHHHHHHHH--------
T ss_pred             hhhhcccCCCeEEEeCCchHHHH-HHHhhhhccccHHHHHHHHHHHHhc-CCCEEEEECCCCccHHHHHHHH--------
Confidence            0000000011122 332222211 1111111001123457888888886 8999999999987655433320        


Q ss_pred             HHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh
Q 023886          171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK  250 (276)
Q Consensus       171 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~  250 (276)
                                                                          ..+.+++|+.|+..++..+.++++.+++
T Consensus       176 ----------------------------------------------------~aD~viiv~~~~~~s~~~~~~~~~~l~~  203 (298)
T 2oze_A          176 ----------------------------------------------------ASDYVMIPLQAEEESTNNIQNYISYLID  203 (298)
T ss_dssp             ----------------------------------------------------HCSEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------HCCeEEEEecCcHHHHHHHHHHHHHHHH
Confidence                                                                1366899999999999999999888876


Q ss_pred             ------CCCCcCeEEEccccCC
Q 023886          251 ------FEIDTHNIIINQVLYD  266 (276)
Q Consensus       251 ------~~~~~~g~vvN~~~~~  266 (276)
                            .++++.|+|+|++.+.
T Consensus       204 ~~~~~~~~~~~~gvv~n~~~~~  225 (298)
T 2oze_A          204 LQEQFNPGLDMIGFVPYLVDTD  225 (298)
T ss_dssp             HHHHHCTTCEEEEEEEEESCTT
T ss_pred             HHHHhCCCCeEEEEEEEEECCC
Confidence                  3788889999998654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=99.91  E-value=1.4e-24  Score=186.52  Aligned_cols=171  Identities=21%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecC-Cccccc
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD-PSVEEE  103 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  103 (276)
                      .+++.|+|+|+||||||||+|+|||.+||+.|+||++||+|+|++++.+|+....  .++.+.+.+-...+.- ....++
T Consensus         4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~~--~~l~~~l~~~~~~~~i~~~~~l~   81 (257)
T 1wcv_1            4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAE--RGVYHLLQGEPLEGLVHPVDGFH   81 (257)
T ss_dssp             -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCS--CCHHHHHTTCCGGGTCEEETTEE
T ss_pred             CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCCC--CCHHHHHcCCCHHHHccccCCEE
Confidence            3456677999999999999999999999999999999999999999999886542  1211111100000000 001111


Q ss_pred             c-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886          104 T-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (276)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~  182 (276)
                      + +....+...+..+....      ..+.++++.  . +||||||||||+++..+..++                     
T Consensus        82 vlp~~~~~~~~~~~l~~~~------~~l~~~l~~--~-~yD~iiiD~pp~~~~~~~~~l---------------------  131 (257)
T 1wcv_1           82 LLPATPDLVGATVELAGAP------TALREALRD--E-GYDLVLLDAPPSLSPLTLNAL---------------------  131 (257)
T ss_dssp             EECCCTTHHHHHHHHTTCT------THHHHHCCC--T-TCSEEEEECCSSCCHHHHHHH---------------------
T ss_pred             EEeCChhHHHHHHHHhhHH------HHHHHHhcc--c-CCCEEEEeCCCCCCHHHHHHH---------------------
Confidence            1 22222222211221110      244555544  3 799999999998654432221                     


Q ss_pred             HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh------CCCCcC
Q 023886          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK------FEIDTH  256 (276)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~------~~~~~~  256 (276)
                                                           .  ..+.+++|+.|+..++..+.++++.+++      .++++.
T Consensus       132 -------------------------------------~--~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~  172 (257)
T 1wcv_1          132 -------------------------------------A--AAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLL  172 (257)
T ss_dssp             -------------------------------------H--HCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred             -------------------------------------H--HCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence                                                 0  1256899999999999998888887764      267778


Q ss_pred             eEEEccccCC
Q 023886          257 NIIINQVLYD  266 (276)
Q Consensus       257 g~vvN~~~~~  266 (276)
                      |+|+|++.+.
T Consensus       173 gvv~N~~~~~  182 (257)
T 1wcv_1          173 GILVTMYDGR  182 (257)
T ss_dssp             EEEEESBCTT
T ss_pred             EEEEEeECCC
Confidence            9999998543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=99.91  E-value=1.2e-23  Score=174.01  Aligned_cols=137  Identities=15%  Similarity=0.176  Sum_probs=105.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      +.|+|+|+|||+||||+|+|||..|+++|+||++||+|||++++.+++....          ++.....           
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~----------~~~~~~~-----------   60 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKA----------AFDVFTA-----------   60 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCC----------SSEEEEC-----------
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCC----------CCcEEec-----------
Confidence            4567999999999999999999999999999999999999999998874321          1111110           


Q ss_pred             cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 023886          108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (276)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~  187 (276)
                                    +.    ..+.+.++.+++ +||||||||||+.+.....++                          
T Consensus        61 --------------~~----~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~l--------------------------   95 (206)
T 4dzz_A           61 --------------AS----EKDVYGIRKDLA-DYDFAIVDGAGSLSVITSAAV--------------------------   95 (206)
T ss_dssp             --------------CS----HHHHHTHHHHTT-TSSEEEEECCSSSSHHHHHHH--------------------------
T ss_pred             --------------Cc----HHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHH--------------------------
Confidence                          00    356778888886 899999999998643322221                          


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC-----CCcCeEEEcc
Q 023886          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-----IDTHNIIINQ  262 (276)
Q Consensus       188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~-----~~~~g~vvN~  262 (276)
                                                        ...+.+++|+.|+..+ ..+.++.+.+++.+     +++ ++|+|+
T Consensus        96 ----------------------------------~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~  139 (206)
T 4dzz_A           96 ----------------------------------MVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITR  139 (206)
T ss_dssp             ----------------------------------HHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECS
T ss_pred             ----------------------------------HHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEec
Confidence                                              0125689999999999 99999999998764     566 999999


Q ss_pred             ccCC
Q 023886          263 VLYD  266 (276)
Q Consensus       263 ~~~~  266 (276)
                      +.+.
T Consensus       140 ~~~~  143 (206)
T 4dzz_A          140 KIEM  143 (206)
T ss_dssp             BCTT
T ss_pred             cCCC
Confidence            9654

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.90  E-value=1.6e-24  Score=195.12  Aligned_cols=180  Identities=16%  Similarity=0.178  Sum_probs=113.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC--------C----------cceeccCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK--------T----------PTLVNGFS   89 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~--------~----------~~~~~~~~   89 (276)
                      +.|+|+|+||||||||+|+|||.+||+.|+|||+||+|+|++++..+......        .          .++.+.+.
T Consensus         2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l~   81 (361)
T 3pg5_A            2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIFV   81 (361)
T ss_dssp             EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGGH
T ss_pred             eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHHH
Confidence            46679999999999999999999999999999999999999998877532110        0          12221110


Q ss_pred             -------Ccee--eecC-Ccccccc-cCccCcchHHHHHhccC----CCc----hHHHHHHHHHHHhcc-CCCcEEEEcC
Q 023886           90 -------NLYA--MEVD-PSVEEET-GSTEGMDSLFSELANAI----PGI----DEAMSFAEMLKLVQT-MDYSCIVFDT  149 (276)
Q Consensus        90 -------~l~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~----~~~----~~~~~l~~~l~~l~~-~~yD~IiiD~  149 (276)
                             ++..  .... ....+++ ++...+......+...+    .+.    .....+.++++.+++ .+||||||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID~  161 (361)
T 3pg5_A           82 PLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFDV  161 (361)
T ss_dssp             HHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEEC
Confidence                   0100  0000 0011222 44444443333222110    000    001247788888862 3799999999


Q ss_pred             CCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 023886          150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC  229 (276)
Q Consensus       150 pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  229 (276)
                      ||+++.++..++                                                            ...+.+++
T Consensus       162 pP~l~~~~~~aL------------------------------------------------------------~~aD~vii  181 (361)
T 3pg5_A          162 GPSLGPFNRTVL------------------------------------------------------------LGCDAFVT  181 (361)
T ss_dssp             CSCCSHHHHHHH------------------------------------------------------------TTCSEEEE
T ss_pred             CCCcCHHHHHHH------------------------------------------------------------HHCCEEEE
Confidence            999776554443                                                            12477899


Q ss_pred             EecCCcccHHHHHHHHHHHhhCC-------------------------------------CCcCeEEEccccCCC
Q 023886          230 VCIPEFLSLYETERLVQELTKFE-------------------------------------IDTHNIIINQVLYDD  267 (276)
Q Consensus       230 V~~p~~~~~~ea~~~~~~l~~~~-------------------------------------~~~~g~vvN~~~~~~  267 (276)
                      |+.|+..++..+.++.+.+++.+                                     +++.|+|+|++....
T Consensus       182 p~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~lG~v~n~~~~r~  256 (361)
T 3pg5_A          182 PTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFDGEGLRYLGYTTLEYVKRR  256 (361)
T ss_dssp             EECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSSSSCCEEEEEEECC-----
T ss_pred             EecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccccccccccceeeEEEEcchhhc
Confidence            99999999999888888877541                                     778899999987654

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=99.90  E-value=2.2e-23  Score=176.41  Aligned_cols=169  Identities=21%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCC---Cceee-ecCCcccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFS---NLYAM-EVDPSVEE  102 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~---~l~~~-~~~~~~~~  102 (276)
                      +.|+|+|+|||+||||+|+|||.+|+++|+||++||+|+ +++++..||.+... .++.+.+.   .+... ...+...+
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l~~~l~~~~~~~~~i~~~~~~~l   81 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CCHHHHhcCCCCHHHHhhcCCCCCE
Confidence            466799999999999999999999999999999999999 58899999876431 11111111   00000 00000111


Q ss_pred             cc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          103 ET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      ++ ++.....  ...+.       ....+.++++.++. +||||||||||+.+......+                    
T Consensus        82 ~~lp~~~~~~--~~~~~-------~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~~--------------------  131 (237)
T 1g3q_A           82 YVLPGAVDWE--HVLKA-------DPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMSAM--------------------  131 (237)
T ss_dssp             EEECCCCSHH--HHHHC-------CGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHHHH--------------------
T ss_pred             EEEeCCCccc--hhhhc-------CHHHHHHHHHHHHh-cCCEEEEECCCCcCHHHHHHH--------------------
Confidence            11 2110000  00110       02356788888886 899999999998553221111                    


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                                                              ...+.+++|+.|+..++.++.++++.+++.+.++.|+|+|
T Consensus       132 ----------------------------------------~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N  171 (237)
T 1g3q_A          132 ----------------------------------------LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLN  171 (237)
T ss_dssp             ----------------------------------------TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ----------------------------------------HHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEe
Confidence                                                    1236799999999999999999999999999999999999


Q ss_pred             cccCCC
Q 023886          262 QVLYDD  267 (276)
Q Consensus       262 ~~~~~~  267 (276)
                      ++.+..
T Consensus       172 ~~~~~~  177 (237)
T 1g3q_A          172 RYGRSD  177 (237)
T ss_dssp             EETSCT
T ss_pred             cCCccc
Confidence            997654

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=99.90  E-value=4.4e-23  Score=176.80  Aligned_cols=168  Identities=20%  Similarity=0.182  Sum_probs=113.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCC---Cceee--ecCCccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFS---NLYAM--EVDPSVE  101 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~---~l~~~--~~~~~~~  101 (276)
                      +.|+|+|+||||||||+|+|||.+||++|+||++||+|+ +++++.+||........+.+.+.   .+...  .......
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~   82 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN   82 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence            456799999999999999999999999999999999999 79999999876542222111110   00000  0000011


Q ss_pred             ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 023886          102 EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG  180 (276)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~  180 (276)
                      +++ ++.....          ........+.++++.+++.+||||||||||+.+.....++                   
T Consensus        83 l~~lp~~~~~~----------~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~~~~~l-------------------  133 (260)
T 3q9l_A           83 LYILPASQTRD----------KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMAL-------------------  133 (260)
T ss_dssp             EEEECCCSCCC----------TTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHHHHHHH-------------------
T ss_pred             EEEecCCCccc----------hhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHHHHHHH-------------------
Confidence            111 1111110          0111234578888888743799999999998654322221                   


Q ss_pred             hhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCC-------
Q 023886          181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI-------  253 (276)
Q Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~-------  253 (276)
                                                               ...+.+++|+.|+..++..+.++.+.++..+.       
T Consensus       134 -----------------------------------------~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~  172 (260)
T 3q9l_A          134 -----------------------------------------YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEE  172 (260)
T ss_dssp             -----------------------------------------HTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCS
T ss_pred             -----------------------------------------HhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccC
Confidence                                                     02367899999999999999999999987753       


Q ss_pred             -CcCeEEEccccC
Q 023886          254 -DTHNIIINQVLY  265 (276)
Q Consensus       254 -~~~g~vvN~~~~  265 (276)
                       ...++|+|++.+
T Consensus       173 ~~~~~~v~N~~~~  185 (260)
T 3q9l_A          173 PIKEHLLLTRYNP  185 (260)
T ss_dssp             CCEEEEEEEEECH
T ss_pred             CcceEEEEecCCc
Confidence             467999999864

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=99.89  E-value=4.6e-23  Score=177.29  Aligned_cols=168  Identities=15%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCC---ceeeecCCccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPSVEEE  103 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~  103 (276)
                      +.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++..||..... .++.+.+.+   +...-......++
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~l~~~l~~~~~~~~~i~~~~~~l~   81 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQNVLAGEARIDEAIYVGPGGVK   81 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CCHHHHHcCCCcHHHhheeCCCCeE
Confidence            466799999999999999999999999999999999999 68999999876431 111111110   0000000001111


Q ss_pred             c-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886          104 T-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM  182 (276)
Q Consensus       104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~  182 (276)
                      + ++.....  ...+       .....+.++++.++. +||||||||||+.+......+                     
T Consensus        82 ~lp~~~~~~--~~~~-------~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~~---------------------  130 (263)
T 1hyq_A           82 VVPAGVSLE--GLRK-------ANPEKLEDVLTQIME-STDILLLDAPAGLERSAVIAI---------------------  130 (263)
T ss_dssp             EEECCSCHH--HHHH-------HCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHH---------------------
T ss_pred             EEcCCCCcC--hhhc-------cChHHHHHHHHHHHh-hCCEEEEeCCCCCChHHHHHH---------------------
Confidence            1 2111000  0001       003467788888886 899999999998553322111                     


Q ss_pred             HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcc
Q 023886          183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ  262 (276)
Q Consensus       183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~  262 (276)
                                                             ...+.+++|+.|+..++..+.++++.+++.+.++.|+|+|+
T Consensus       131 ---------------------------------------~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~  171 (263)
T 1hyq_A          131 ---------------------------------------AAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNR  171 (263)
T ss_dssp             ---------------------------------------HHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred             ---------------------------------------HHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEcc
Confidence                                                   01256899999999999999999999999899999999999


Q ss_pred             ccCC
Q 023886          263 VLYD  266 (276)
Q Consensus       263 ~~~~  266 (276)
                      +.+.
T Consensus       172 ~~~~  175 (263)
T 1hyq_A          172 ITTL  175 (263)
T ss_dssp             ECTT
T ss_pred             CCcc
Confidence            9654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=99.89  E-value=2.9e-23  Score=183.17  Aligned_cols=176  Identities=20%  Similarity=0.202  Sum_probs=100.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      .||+-++|||||||||+|+|||.+||+.|+||++||+|||++.+..++..........................+ ....
T Consensus        48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i-~~~~  126 (314)
T 3fwy_A           48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV-FEGF  126 (314)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC-EECG
T ss_pred             ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe-eecC
Confidence            455544599999999999999999999999999999999999877665432211000000000000000000000 0000


Q ss_pred             cCcchHHHH--Hhc-cCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHh-hhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          108 EGMDSLFSE--LAN-AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL-LQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       108 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~-~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                      .++..++..  ... ..........+..+.+......||||++||||+...+.+ +++                      
T Consensus       127 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~~al----------------------  184 (314)
T 3fwy_A          127 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAPL----------------------  184 (314)
T ss_dssp             GGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGGGGG----------------------
T ss_pred             CCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhHhHH----------------------
Confidence            011000000  000 001111112233333322223799999999998554433 221                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh----CCCCcCeEE
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK----FEIDTHNII  259 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~----~~~~~~g~v  259 (276)
                                                            ...+.+++|++|+..+++.+.++.+.++.    .+.++.|+|
T Consensus       185 --------------------------------------~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI  226 (314)
T 3fwy_A          185 --------------------------------------QHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCV  226 (314)
T ss_dssp             --------------------------------------GTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEE
T ss_pred             --------------------------------------hhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEE
Confidence                                                  02367999999999999999999888875    356778999


Q ss_pred             Ecccc
Q 023886          260 INQVL  264 (276)
Q Consensus       260 vN~~~  264 (276)
                      +|+..
T Consensus       227 ~n~~~  231 (314)
T 3fwy_A          227 ANRSR  231 (314)
T ss_dssp             EESCS
T ss_pred             EcCCC
Confidence            99764

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.87  E-value=5.6e-23  Score=187.33  Aligned_cols=135  Identities=17%  Similarity=0.215  Sum_probs=79.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHH------hCCCcEEEEecCCCCChhHHhccccCC---CcceeccC-CCce---
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRFTK---TPTLVNGF-SNLY---   92 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la------~~G~kVlliD~D~~~~l~~~l~~~~~~---~~~~~~~~-~~l~---   92 (276)
                      .++.|+|+|+||||||||+|+|||.+||      +.|+|||+||+|+|++++.+|+.....   ..+..+.+ ..+.   
T Consensus       107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~  186 (398)
T 3ez2_A          107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREE  186 (398)
T ss_dssp             SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCHHH
T ss_pred             CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccccc
Confidence            3466779999999999999999999999      479999999999999999999875421   11111100 0000   


Q ss_pred             ----eeecCCcccccc-cCccCcchHHH---H-HhccCCCc-hHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886           93 ----AMEVDPSVEEET-GSTEGMDSLFS---E-LANAIPGI-DEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF  161 (276)
Q Consensus        93 ----~~~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~-~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i  161 (276)
                          .........+++ ++...+.....   . .....++. .....+.++++.+++ +||||||||||+++..+..++
T Consensus       187 ~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~-~yD~ViiD~pp~~~~~~~~~l  264 (398)
T 3ez2_A          187 LLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKS-DYDFILVDSGPHLDAFLKNAL  264 (398)
T ss_dssp             HHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHTT-TCSEEEEEECSCCSHHHHHHH
T ss_pred             cHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhhc-cCCEEEEeCCCCccHHHHHHH
Confidence                000000011122 33322211100   0 00001111 112345678888886 899999999999776654443

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.87  E-value=9.8e-22  Score=163.83  Aligned_cols=131  Identities=21%  Similarity=0.150  Sum_probs=98.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE  108 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (276)
                      .|+|+|+||||||||+|+|||..|+++| ||++||+|+|++++.+++. .  +      ++        . ..+      
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~-~--~------l~--------~-~vi------   56 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR-G--S------LP--------F-KVV------   56 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH-S--C------CS--------S-EEE------
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC-C--C------CC--------c-cee------
Confidence            5779999999999999999999999999 9999999999999988875 1  0      00        0 000      


Q ss_pred             CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCc-hhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 023886          109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT-GHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT  187 (276)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~-~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~  187 (276)
                                   +. .       .++.+.. +||||||||||+ .+.....++                          
T Consensus        57 -------------~~-~-------~l~~l~~-~yD~viiD~p~~~~~~~~~~~l--------------------------   88 (209)
T 3cwq_A           57 -------------DE-R-------QAAKYAP-KYQNIVIDTQARPEDEDLEALA--------------------------   88 (209)
T ss_dssp             -------------EG-G-------GHHHHGG-GCSEEEEEEECCCSSSHHHHHH--------------------------
T ss_pred             -------------CH-H-------HHHHhhh-cCCEEEEeCCCCcCcHHHHHHH--------------------------
Confidence                         00 0       3445555 899999999998 543322211                          


Q ss_pred             hhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-CCCcCeEEEccccCC
Q 023886          188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVLYD  266 (276)
Q Consensus       188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-~~~~~g~vvN~~~~~  266 (276)
                                                        ...+.+++++.|+..++..+.++++.+++. +.+ .++|+|++.+.
T Consensus        89 ----------------------------------~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~  133 (209)
T 3cwq_A           89 ----------------------------------DGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPY  133 (209)
T ss_dssp             ----------------------------------HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred             ----------------------------------HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence                                              023568899999999999999999999884 555 68999998654


Q ss_pred             C
Q 023886          267 D  267 (276)
Q Consensus       267 ~  267 (276)
                      .
T Consensus       134 ~  134 (209)
T 3cwq_A          134 P  134 (209)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=99.86  E-value=2.6e-22  Score=175.20  Aligned_cols=48  Identities=31%  Similarity=0.486  Sum_probs=42.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      +.|+| ++||||||||+|+|||.+||++|+||++||+|||++++.++..
T Consensus         3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~   50 (289)
T 2afh_E            3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH   50 (289)
T ss_dssp             EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred             eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence            34456 7999999999999999999999999999999999988777653

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=99.86  E-value=2.8e-22  Score=172.93  Aligned_cols=173  Identities=17%  Similarity=0.232  Sum_probs=98.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCC------ceeeecCCcccc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN------LYAMEVDPSVEE  102 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~------l~~~~~~~~~~~  102 (276)
                      .|+| ++||||||||+|+|||.+||++|+||++||+|+|++.+..+..... .+++.+.+.+      +..........+
T Consensus         3 vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~i~~~~~~l   80 (269)
T 1cp2_A            3 QVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLA-QKSVLDTLREEGEDVELDSILKEGYGGI   80 (269)
T ss_dssp             EEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCC-CCCHHHHHHHHGGGCCHHHHCEECGGGC
T ss_pred             EEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCC-cccHHHHHhccCcCCCHHHhhccCCCCe
Confidence            4456 7999999999999999999999999999999999987766643221 1111110000      000000000011


Q ss_pred             cc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          103 ET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      ++ +.........  ..  .++......+.+.++.+++ +||||||||||....- .+..|.                  
T Consensus        81 ~vl~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~l~~-~yD~iiiD~~~~~~~~-~~~~~~------------------  136 (269)
T 1cp2_A           81 RCVESGGPEPGVG--CA--GRGIITSINMLEQLGAYTD-DLDYVFYDVLGDVVCG-GFAMPI------------------  136 (269)
T ss_dssp             EEEECCCCCTTSS--CH--HHHHHHHHHHHHHTTCCCT-TCSEEEEEEECSSCST-TTTHHH------------------
T ss_pred             eEEeCCCchhhcc--cc--CcchhhHHHHHHHHHhhcc-CCCEEEEeCCchhhhh-hhhhhh------------------
Confidence            11 1111110000  00  0000001112233333444 7999999999863210 000000                  


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCCcCe
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHN  257 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~~~g  257 (276)
                                                            .....+.+++|+.|+..++..+.++.+.++..    ++++.|
T Consensus       137 --------------------------------------~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g  178 (269)
T 1cp2_A          137 --------------------------------------REGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGG  178 (269)
T ss_dssp             --------------------------------------HTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEE
T ss_pred             --------------------------------------hHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence                                                  01234779999999999999999888888753    677789


Q ss_pred             EEEccccC
Q 023886          258 IIINQVLY  265 (276)
Q Consensus       258 ~vvN~~~~  265 (276)
                      +|+|++..
T Consensus       179 vv~N~~~~  186 (269)
T 1cp2_A          179 IICNSRKV  186 (269)
T ss_dssp             EEEECCSS
T ss_pred             EEeecCCc
Confidence            99999853

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.85  E-value=5.2e-22  Score=173.19  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcce-eccCCCc-eeeecCCcccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTL-VNGFSNL-YAMEVDPSVEEET  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~-~~~~~~l-~~~~~~~~~~~~~  104 (276)
                      +.|+|+|+||||||||+|+|||.+|++.|+||++||+|+ |++++.+|+.+....... .....++ ...          
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl----------   74 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNL----------   74 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECS----------
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEe----------
Confidence            356799999999999999999999999999999999999 999999998653100000 0000111 000          


Q ss_pred             cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886          105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL  156 (276)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l  156 (276)
                      +...     ...+.  .........+.++++.++. +||||||||||+.+..
T Consensus        75 ~~~~-----~~~~~--~~~~~~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~  118 (286)
T 2xj4_A           75 SDND-----VALAE--RPEEEQVAGFEAAFARAMA-ECDFILIDTPGGDSAI  118 (286)
T ss_dssp             SSCH-----HHHTT--SCHHHHHHHHHHHHHHHHH-HCSEEEEECCSSCCHH
T ss_pred             eCCC-----CCCcC--hhhhhhHHHHHHHHHHHHh-cCCEEEEcCCCCccHH
Confidence            1000     00000  0011223467888888886 8999999999986433

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.85  E-value=2.9e-22  Score=182.95  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=37.2

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHH------hCCCcEEEEecCCCCChhHHhcccc
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRF   78 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la------~~G~kVlliD~D~~~~l~~~l~~~~   78 (276)
                      +++.|+|+|+||||||||+|+|||.+||      +.|+|||+||+|+|++++.+|+...
T Consensus       110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~  168 (403)
T 3ez9_A          110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH  168 (403)
T ss_dssp             SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred             CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence            4466779999999999999999999999      6899999999999999998888654

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.85  E-value=8.2e-22  Score=178.20  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT   79 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~   79 (276)
                      ++++.|+|+|+||||||||+|+|||.+||++|+||++||+|++++++.+||....
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~  195 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGN  195 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCS
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCC
Confidence            3446677999999999999999999999999999999999999999999987654

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.78  E-value=1.6e-18  Score=145.15  Aligned_cols=176  Identities=13%  Similarity=0.035  Sum_probs=99.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcc--ccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV--EEETG  105 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~  105 (276)
                      +.|+|+|+||||||||+|+|||.+|+++|+||+++|  ||.+.....  +..........+............  ...+.
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~   77 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKT--PEGLRNSDALALQRNSSLQLDYATVNPYTFA   77 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCC--TTSCBCHHHHHHHHTCSSCCCHHHHCSEEES
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccC--CCCcChHHHHHHHHHhCCCCChhhcccEEeC
Confidence            457799999999999999999999999999999974  543211000  000000000000000000000000  00000


Q ss_pred             CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhH-HHhhhhHHHHHHHHHHHHHHHHHHhhhHh
Q 023886          106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LRLLQFPSTLEKGLDKMMSLKNKFGGMIN  184 (276)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~-l~~~~ip~~~~~~l~~l~~~~~~~~~~~~  184 (276)
                      . .....+...... .+  .....+.+.++.+++ +||||||||||+++. +.....                       
T Consensus        78 ~-~~~~~~~~~~~~-~~--~~~~~l~~~l~~l~~-~yD~viID~p~~l~~p~~~~~~-----------------------  129 (224)
T 1byi_A           78 E-PTSPHIISAQEG-RP--IESLVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFT-----------------------  129 (224)
T ss_dssp             S-CSCHHHHHHHHT-CC--CCHHHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEE-----------------------
T ss_pred             C-CCCHHHHHHHcC-CC--CCHHHHHHHHHHHHH-hCCEEEEEcCCccccCCCcchh-----------------------
Confidence            0 000001111111 11  123567888888886 899999999998542 100000                       


Q ss_pred             hhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       185 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                                                 ...+...+.    ..+++|+.+...++.++...++.++..++++.|+|+|++.
T Consensus       130 ---------------------------~~~l~~~~~----~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~  178 (224)
T 1byi_A          130 ---------------------------FADWVTQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVT  178 (224)
T ss_dssp             ---------------------------HHHHHHHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCS
T ss_pred             ---------------------------HHHHHHHhC----CCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCC
Confidence                                       000001111    2378888899999999999999999999999999999996


Q ss_pred             CC
Q 023886          265 YD  266 (276)
Q Consensus       265 ~~  266 (276)
                      +.
T Consensus       179 ~~  180 (224)
T 1byi_A          179 PP  180 (224)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.62  E-value=4.2e-15  Score=136.32  Aligned_cols=44  Identities=32%  Similarity=0.403  Sum_probs=38.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l~   71 (276)
                      ++++.+.|+||+||||++++||.+++++ |+||++||+|++.+..
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a  144 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA  144 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH
Confidence            4556555899999999999999999998 9999999999987644

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.52  E-value=4.9e-14  Score=123.24  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .+++.+.|++|+||||++.+||..++..|+||+++|+|++.+.+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a  141 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA  141 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence            45666669999999999999999999999999999999987754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.51  E-value=1.8e-12  Score=114.39  Aligned_cols=43  Identities=30%  Similarity=0.331  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      .+++.+.|.+|+||||++.+||..++..|+||+++|+|++...
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~  147 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG  147 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence            4555444679999999999999999999999999999997653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.47  E-value=1.1e-13  Score=118.28  Aligned_cols=43  Identities=23%  Similarity=0.173  Sum_probs=39.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      ..+++++|||||||||++.+||..++ .|+||++||+|||.+..
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence            46679999999999999999999999 99999999999997753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.46  E-value=3.6e-13  Score=117.63  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .+++.+.|++|+||||++.+||..++..|.+|+++|+|++.+..
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~  141 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA  141 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH
Confidence            44554449999999999999999999999999999999987654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.43  E-value=6.6e-13  Score=121.39  Aligned_cols=43  Identities=21%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      +.++++.|.+|+||||++.+||.++++.|+||+++|+|++...
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a  142 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG  142 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence            5777777889999999999999999999999999999997653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.42  E-value=7.3e-13  Score=120.81  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .+++.+.|++|+||||++.+||..++..|++|+++|+|++.+..
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa  141 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA  141 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence            45555559999999999999999999999999999999987654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.33  E-value=1e-11  Score=115.59  Aligned_cols=44  Identities=23%  Similarity=0.185  Sum_probs=37.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .+++.+.|.+|+||||++.+||.++++.|+||++||+|++.+..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa  144 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA  144 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH
Confidence            44555558899999999999999999999999999999987754

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=99.33  E-value=1.5e-11  Score=103.45  Aligned_cols=169  Identities=14%  Similarity=0.063  Sum_probs=97.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCC-CCh--hHHhccccCCCcceeccCCCceeeecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPA-HNL--SDAFQQRFTKTPTLVNGFSNLYAMEVDP   98 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~-~~l--~~~l~~~~~~~~~~~~~~~~l~~~~~~~   98 (276)
                      ++.+.|++...|+|||+++++|+.+|+++|+||..+=     .|.. ..+  ++.+- ...       +.+ .......+
T Consensus         4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~-~~~-------~~~-~~~~~~~~   74 (228)
T 3of5_A            4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL-NAY-------KHK-FTAAEINL   74 (228)
T ss_dssp             CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH-HHT-------TTS-SCHHHHCS
T ss_pred             CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH-Hhc-------CCC-CChhhEEE
Confidence            3556688889999999999999999999999999863     1110 011  01100 000       000 00000000


Q ss_pred             cccccccCccCcchHHH-HHhccCCCchHHHHHHHHHHH-hccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886           99 SVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKL-VQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK  176 (276)
Q Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~-l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~  176 (276)
                         ..+.  ...+.... .+.+. +  .....+.+.++. +.+ +||+||||+|+++..-....                
T Consensus        75 ---~~~~--~p~sp~~aa~~~~~-~--i~~~~i~~~~~~~l~~-~~D~vlIEgaggl~~p~~~~----------------  129 (228)
T 3of5_A           75 ---ISFN--QAVAPHIIAAKTKV-D--ISIENLKQFIEDKYNQ-DLDILFIEGAGGLLTPYSDH----------------  129 (228)
T ss_dssp             ---EEES--SSSCHHHHHHHTTC-C--CCHHHHHHHHHGGGGS-SCSEEEEEEEEETTCBSSSS----------------
T ss_pred             ---EEEC--CCCCHHHHHHHcCC-C--CCHHHHHHHHHHHHHc-cCCEEEEECCCccccccccc----------------
Confidence               0000  00111111 11111 1  122356777777 776 89999999998733100000                


Q ss_pred             HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886          177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH  256 (276)
Q Consensus       177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~  256 (276)
                                         .              ...++...+..+    +++|+.+...++.++....+.++..++++.
T Consensus       130 -------------------~--------------~~adla~~l~~p----viLV~~~~~~~i~~~~~~~~~l~~~~~~i~  172 (228)
T 3of5_A          130 -------------------T--------------TQLDLIKALQIP----VLLVSAIKVGCINHTLLTINELNRHNIKLA  172 (228)
T ss_dssp             -------------------C--------------BHHHHHHHHTCC----EEEEEECSTTHHHHHHHHHHHHHHTTCCEE
T ss_pred             -------------------h--------------hHHHHHHHcCCC----EEEEEcCCcchHHHHHHHHHHHHhCCCcEE
Confidence                               0              001112222333    899999999999999999999999999999


Q ss_pred             eEEEccccCC
Q 023886          257 NIIINQVLYD  266 (276)
Q Consensus       257 g~vvN~~~~~  266 (276)
                      |+|+|++.++
T Consensus       173 GvIlN~~~~~  182 (228)
T 3of5_A          173 GWIANCNDSN  182 (228)
T ss_dssp             EEEEEECCTT
T ss_pred             EEEEECcCCc
Confidence            9999999654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.29  E-value=2.4e-11  Score=111.33  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=37.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      +++.+.|.+|+||||++.+||..++++|+||+++|+|++.+.
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~  141 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA  141 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence            455556689999999999999999999999999999998653

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=99.29  E-value=9e-11  Score=99.88  Aligned_cols=179  Identities=12%  Similarity=0.074  Sum_probs=101.0

Q ss_pred             cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCChhHHhccccCCCcceeccCC
Q 023886           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPAHNLSDAFQQRFTKTPTLVNGFS   89 (276)
Q Consensus        15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~~~l~~~l~~~~~~~~~~~~~~~   89 (276)
                      +...++.+...+++.+.+++...|+|||++++.|+.+|+++|+||..+=     ..+...-..++.........     .
T Consensus        14 ~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~-----~   88 (251)
T 3fgn_A           14 LQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQL-----A   88 (251)
T ss_dssp             --------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEE-----E
T ss_pred             hhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCC-----C
Confidence            3345566666565666677779999999999999999999999999874     11111111111100000000     0


Q ss_pred             CceeeecCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhH-HHhhhhHHHHHHH
Q 023886           90 NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LRLLQFPSTLEKG  168 (276)
Q Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~-l~~~~ip~~~~~~  168 (276)
                      +...          +  ....+..........+. .....+.+.++.+.+ +||+||||+++++.. ++....       
T Consensus        89 ~~~~----------~--~~p~sP~~aa~~~~~~~-~~~~~i~~~~~~l~~-~~D~vlIEGagGl~~pl~~~~~-------  147 (251)
T 3fgn_A           89 GLAR----------Y--PQPMAPAAAAEHAGMAL-PARDQIVRLIADLDR-PGRLTLVEGAGGLLVELAEPGV-------  147 (251)
T ss_dssp             EEEE----------C--SSSSCHHHHHHHTTCCC-CCHHHHHHHHHTTCC-TTCEEEEECSSSTTCEEETTTE-------
T ss_pred             CCee----------E--CCCCChHHHHHHcCCCC-CCHHHHHHHHHHHHh-cCCEEEEECCCCCcCCcCcccc-------
Confidence            0000          0  00011111111111101 123356777787876 899999999997421 000000       


Q ss_pred             HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886          169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL  248 (276)
Q Consensus       169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l  248 (276)
                                                                ...++.+.+.    ..+++|+.++..++..+....+.+
T Consensus       148 ------------------------------------------~~adla~~l~----~pVILV~~~~~g~i~~~~lt~~~l  181 (251)
T 3fgn_A          148 ------------------------------------------TLRDVAVDVA----AAALVVVTADLGTLNHTKLTLEAL  181 (251)
T ss_dssp             ------------------------------------------EHHHHHHHTT----CEEEEEECSSTTHHHHHHHHHHHH
T ss_pred             ------------------------------------------hHHHHHHHcC----CCEEEEEcCCCccHHHHHHHHHHH
Confidence                                                      0001112222    348999999999999999999999


Q ss_pred             hhCCCCcCeEEEccccC
Q 023886          249 TKFEIDTHNIIINQVLY  265 (276)
Q Consensus       249 ~~~~~~~~g~vvN~~~~  265 (276)
                      ++.++++.|+|+|++..
T Consensus       182 ~~~g~~i~GvIlN~v~~  198 (251)
T 3fgn_A          182 AAQQVSCAGLVIGSWPD  198 (251)
T ss_dssp             HHTTCCEEEEEEEEECS
T ss_pred             HhCCCCEEEEEEECCCC
Confidence            99999999999999953

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=99.27  E-value=1.4e-11  Score=102.68  Aligned_cols=46  Identities=20%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      +..+|+++||||||||++.++|..++++|++|+++|.|+|++...+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~   51 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE   51 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH
Confidence            4457999999999999999999999999999999999999987643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.25  E-value=2.1e-11  Score=111.43  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=39.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..+++++.|++|+||||++.+||..++..|+||+++|+|++..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~  138 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP  138 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence            3678888899999999999999999999999999999998654

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=99.20  E-value=3.8e-10  Score=95.52  Aligned_cols=172  Identities=13%  Similarity=0.106  Sum_probs=98.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCC--CChh-HHhccccCCCcceeccCC-CceeeecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPA--HNLS-DAFQQRFTKTPTLVNGFS-NLYAMEVDP   98 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~--~~l~-~~l~~~~~~~~~~~~~~~-~l~~~~~~~   98 (276)
                      +.+.|++...|+|||++++.|+.+|+++|+||..+-     .++.  .... ..+-...       .... ++....+.+
T Consensus        22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~-------~~~~~g~~~~~~~p   94 (242)
T 3qxc_A           22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN-------RLLDRSLTLKDISF   94 (242)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHH-------HTTCTTCCHHHHCC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHH-------HHHhCCCChHHeee
Confidence            566678889999999999999999999999999984     2110  0000 0000000       0000 000000000


Q ss_pred             cccccccCccCcchHHH-HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHH
Q 023886           99 SVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKN  177 (276)
Q Consensus        99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~  177 (276)
                         .-+  ....+.... .+...... .....+.+.++.+.+ +||+||||.++++..-      ..             
T Consensus        95 ---~~~--~~p~sp~~aa~~~g~~~~-i~~~~I~~~~~~l~~-~~D~vlIEGagGl~~p------l~-------------  148 (242)
T 3qxc_A           95 ---YRY--HKVSAPLIAQQEEDPNAP-IDTDNLTQRLHNFTK-TYDLVIVEGAGGLCVP------IT-------------  148 (242)
T ss_dssp             ---EEC--SSSSCHHHHHHHHCTTCC-CCHHHHHHHHHHGGG-TCSEEEEECCSCTTCB------SS-------------
T ss_pred             ---EEE--CCCCChHHHHHHcCCCCc-CCHHHHHHHHHHHHh-cCCEEEEECCCCcccc------cc-------------
Confidence               000  001111111 11111001 123356777788876 8999999999873310      00             


Q ss_pred             HHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCe
Q 023886          178 KFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHN  257 (276)
Q Consensus       178 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g  257 (276)
                                .      ..              ...++.+.+.    ..+++|+.++..++..+...++.+++.|++ .|
T Consensus       149 ----------~------~~--------------~~adlA~~l~----~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~G  193 (242)
T 3qxc_A          149 ----------L------EE--------------NMLDFALKLK----AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YK  193 (242)
T ss_dssp             ----------S------SC--------------BHHHHHHHHT----CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EE
T ss_pred             ----------c------cc--------------hHHHHHHHcC----CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EE
Confidence                      0      00              0001112222    348999999999999999999999999999 99


Q ss_pred             EEEccccCCC
Q 023886          258 IIINQVLYDD  267 (276)
Q Consensus       258 ~vvN~~~~~~  267 (276)
                      +|+|++.++.
T Consensus       194 vIlN~v~~~~  203 (242)
T 3qxc_A          194 IAINLKGNNT  203 (242)
T ss_dssp             EEECCCTTCC
T ss_pred             EEEeCCCCcc
Confidence            9999997654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.20  E-value=1.2e-09  Score=95.72  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +.+++.+.|.+|+||||++.+||..++..|++|+++|+|.+..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~  145 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA  145 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH
Confidence            3456655567999999999999999999999999999998754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.14  E-value=8.6e-10  Score=96.18  Aligned_cols=42  Identities=26%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~   69 (276)
                      .+++.+.|.+|+||||++.+||..++. .|++|+++|+|++..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~  147 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI  147 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence            345555577999999999999999995 899999999999754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.98  E-value=1.2e-09  Score=97.60  Aligned_cols=44  Identities=30%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      ...++.++|++|+||||++.+|+..++..|+||+++|.||+.+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~  121 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR  121 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence            44566778899999999999999999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.42  E-value=9.5e-07  Score=78.36  Aligned_cols=44  Identities=27%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      ...++.+.|++|+||||+..+|+..++..|.+|.++|.|++...
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~   98 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV   98 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence            34555667899999999999999999999999999999998654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.31  E-value=3.4e-05  Score=71.23  Aligned_cols=43  Identities=26%  Similarity=0.291  Sum_probs=37.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ...++.+.|.+|+||||+...||..+...|.+|++.+.|....
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~  334 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA  334 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence            3467777789999999999999999998889999999998653

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.14  E-value=6e-06  Score=73.59  Aligned_cols=50  Identities=18%  Similarity=0.072  Sum_probs=40.7

Q ss_pred             hhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           19 VRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |..++. +  +..+++++.|++|+||||+|.++|..+++.|.+|++||++...
T Consensus        51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~  103 (356)
T 1u94_A           51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL  103 (356)
T ss_dssp             HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            555554 1  2356788889999999999999999999999999999997543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.02  E-value=3.2e-06  Score=69.60  Aligned_cols=50  Identities=18%  Similarity=0.063  Sum_probs=38.2

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++..+......++++.|.+|+||||+..+|+..+... ++|.+|+.|++.+
T Consensus        21 ~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~   70 (221)
T 2wsm_A           21 NREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK   70 (221)
T ss_dssp             HHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred             HHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence            3444433345566667899999999999999988655 8999999999754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.00  E-value=1.1e-05  Score=66.21  Aligned_cols=42  Identities=19%  Similarity=0.056  Sum_probs=35.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      ...++.+.|++|+||||++.++|.   ..|.+|+++|.+.+.+..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~   60 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPE   60 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHH
Confidence            356788899999999999999998   668899999999855443

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.00  E-value=2.1e-05  Score=70.26  Aligned_cols=52  Identities=17%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|+.++. +  +...++.+.|.+|+||||+|.++|..+++.|.+|++||++....
T Consensus        61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~  115 (366)
T 1xp8_A           61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD  115 (366)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh
Confidence            3455554 1  22456777899999999999999999999999999999996543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.99  E-value=1.7e-05  Score=64.39  Aligned_cols=39  Identities=18%  Similarity=0.060  Sum_probs=34.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..|++..|+| .||||.|..+|...+..|+||+++-....
T Consensus        29 g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg   67 (196)
T 1g5t_A           29 GIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKG   67 (196)
T ss_dssp             CCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             ceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            4666777777 99999999999999999999999987764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.94  E-value=4.7e-05  Score=67.03  Aligned_cols=43  Identities=28%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+..++.+.|..|+||||+...||..+...|.+|++++.|...
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            4467787888999999999999999999999999999999754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.77  E-value=7.3e-05  Score=66.36  Aligned_cols=51  Identities=18%  Similarity=0.052  Sum_probs=41.0

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .|..++. +  +...++.+.|.+|+||||++.+++..+++.|.+|++||++...
T Consensus        48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~  101 (349)
T 2zr9_A           48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL  101 (349)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            3555554 1  2346777889999999999999999999999999999998643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.72  E-value=4e-05  Score=63.09  Aligned_cols=50  Identities=22%  Similarity=0.129  Sum_probs=36.1

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++..........+++.|.+||||||+..+|+..+... +++..|+.|++.+
T Consensus        29 ~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~   78 (226)
T 2hf9_A           29 NRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAK   78 (226)
T ss_dssp             HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTH
T ss_pred             HHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCC
Confidence            4444333333444444889999999999999887655 7899999998744

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.70  E-value=0.00015  Score=63.12  Aligned_cols=41  Identities=29%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ..++.+.|.+|+||||+...||..+...|.+|++.+.|...
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            44565558999999999999999999888999999999754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.63  E-value=6e-05  Score=60.35  Aligned_cols=40  Identities=30%  Similarity=0.258  Sum_probs=35.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +..++++.|..|+||||++..||..+...|.+|.++|.|.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~   51 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW   51 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence            3566788899999999999999999999999999999873

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.59  E-value=0.00025  Score=61.83  Aligned_cols=40  Identities=8%  Similarity=0.042  Sum_probs=34.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN   69 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~~   69 (276)
                      ++.+.|.+|+||||++..++..+++.  |.+|+.||......
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~   71 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT   71 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence            57888999999999999999999886  88999999875443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.58  E-value=0.00029  Score=62.56  Aligned_cols=52  Identities=15%  Similarity=0.051  Sum_probs=42.1

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|+.++. +  +...++.+.|.+|+||||++.++|..++..|.+|++||......
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~  102 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD  102 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence            4566665 2  23467888889999999999999999999999999999986544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.57  E-value=0.0001  Score=58.54  Aligned_cols=40  Identities=18%  Similarity=-0.050  Sum_probs=35.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++.++|..|+||||++..|+..|..+|++|.+|..|+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            4556677788999999999999999999999999999986

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.45  E-value=0.00034  Score=58.06  Aligned_cols=35  Identities=20%  Similarity=-0.034  Sum_probs=32.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      ..+.++.|..|.||||.+..++..++..|++|+++
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            46788899999999999999999999999999999

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.43  E-value=0.00027  Score=62.52  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~   67 (276)
                      |..++.+  +...++.+.|.+|+||||++.++|...+.      .|.+|++||++..
T Consensus       111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~  167 (343)
T 1v5w_A          111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT  167 (343)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            4555532  34578889999999999999999987654      5789999999875

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=97.39  E-value=0.0012  Score=58.29  Aligned_cols=37  Identities=16%  Similarity=0.045  Sum_probs=31.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ..++.++..--+|||||++..|..++.++|.++..+-
T Consensus       152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~  188 (349)
T 2obn_A          152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA  188 (349)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence            4566677778899999999999999999999999843

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.38  E-value=0.00017  Score=61.17  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++++.|-+|+||||+|..|+..|...|..++++|.|.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~   42 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL   42 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence            456888899999999999999999999999999888873

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=97.37  E-value=0.0029  Score=62.42  Aligned_cols=38  Identities=11%  Similarity=-0.062  Sum_probs=34.5

Q ss_pred             EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      +|+|.....-.+..+.-..+.++..++++.|+|+|++.
T Consensus       234 VILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~  271 (831)
T 4a0g_A          234 GILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG  271 (831)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred             EEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence            78898888888999999999999999999999999874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.34  E-value=0.00025  Score=62.10  Aligned_cols=50  Identities=20%  Similarity=0.198  Sum_probs=38.8

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~   67 (276)
                      .+..++.+  +...++.+.|.+|+||||++.++|...+..      |.+|++||++..
T Consensus        95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A           95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            34445532  234678888999999999999999887655      789999999965

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.26  E-value=0.00047  Score=57.13  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~   67 (276)
                      |+.++.+  +...++.+.|.+|+||||++..+|...+.      .+.+|+++|.+..
T Consensus        13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~   69 (243)
T 1n0w_A           13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT   69 (243)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence            4555532  23467788899999999999999986443      3678999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.24  E-value=0.00026  Score=56.46  Aligned_cols=37  Identities=30%  Similarity=0.274  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            5678899999999999999999999899999988643

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.18  E-value=0.0019  Score=57.11  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..++.+.|.+|+||||+.-.|+..+...|.+|.++..||+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~  115 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC  115 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence            456677799999999999999999988899999999999754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.00057  Score=56.69  Aligned_cols=40  Identities=18%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++.+.|.+|+||||++.++|..++..|.+|++++.+..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            4577888999999999999999999999999999999864

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.07  E-value=0.00056  Score=59.69  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|..++.+ .+..++++.|.+|+||||++.++|..++..|.+|+++++...
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s  107 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  107 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            34444421 335678889999999999999999999999999999999843

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=97.06  E-value=0.026  Score=52.72  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=37.0

Q ss_pred             EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      -|.|+.| -.|+|||++++.|+..|.++|+||..+=.||.-|..
T Consensus         5 ~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d   48 (545)
T 1s1m_A            5 YIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVD   48 (545)
T ss_dssp             EEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSC
T ss_pred             EEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCC
Confidence            4456635 889999999999999999999999999999876654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.06  E-value=0.00034  Score=61.13  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=38.0

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHH------------hCC----CcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA------------EVR----PSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la------------~~G----~kVlliD~D~~   67 (276)
                      .+..++.+  +...++.+.|.+|+||||++.++|...+            ..|    .+|++||++..
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            34555532  3357888899999999999999998743            245    79999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.05  E-value=0.0022  Score=56.43  Aligned_cols=43  Identities=30%  Similarity=0.400  Sum_probs=37.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ....++.+.|.+|+||||+...|+..+...|.+|.++..|++.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            4456777889999999999999999988888899999999853

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.00  E-value=0.0017  Score=62.87  Aligned_cols=21  Identities=19%  Similarity=0.216  Sum_probs=17.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +.+.|++|+||||++-+|...
T Consensus        13 I~IiG~~~~GKTTL~~~Ll~~   33 (704)
T 2rdo_7           13 IGISAHIDAGKTTTTERILFY   33 (704)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            455579999999999999653

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.95  E-value=0.00071  Score=61.95  Aligned_cols=50  Identities=12%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |..++.+ .+..++++.|.+|+||||++.++|...+..|.+|+++++....
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~  237 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK  237 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence            4444432 3356788899999999999999999999999999999999643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.93  E-value=0.0013  Score=52.28  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +.++.++|..|+||||+...|...+...|++|..+..|+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            45677888999999999999999999999999999988753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.91  E-value=0.0011  Score=53.63  Aligned_cols=41  Identities=29%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ....++.+.|..|+||||++..|+..+...|.+|.+++.|.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            34577888899999999999999999988888999998885

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.91  E-value=0.0009  Score=59.00  Aligned_cols=50  Identities=16%  Similarity=0.204  Sum_probs=40.9

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|..++.+ .+..++++.|.+|+||||++.++|..++..|.+|++++++..
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS   85 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            44555432 334678889999999999999999999999999999999854

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.90  E-value=0.0024  Score=66.93  Aligned_cols=52  Identities=19%  Similarity=0.094  Sum_probs=43.1

Q ss_pred             chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|..++.   =+..+++.+.|.+|+||||+|.++|...++.|.+|++||++....
T Consensus       370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~  424 (1706)
T 3cmw_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  424 (1706)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred             HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence            3555554   134678888999999999999999999999999999999997554

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.87  E-value=0.0013  Score=53.92  Aligned_cols=48  Identities=13%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.....+....+++.|.+|+||||++..+|..+...|.++..++++.
T Consensus        43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            334443434566788899999999999999999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.85  E-value=0.002  Score=68.37  Aligned_cols=51  Identities=20%  Similarity=0.081  Sum_probs=42.7

Q ss_pred             chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .++.++.   =+..+++.+.|.+|+|||++|.++|....++|.+|+.||++-..
T Consensus      1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A         1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred             HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence            4566665   23467888899999999999999999999999999999998543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.80  E-value=0.00097  Score=56.03  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=33.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHh-----CCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~-----~G~kVlliD~D~   66 (276)
                      ..+.++.+.|..|+||||+|..||..+..     .|++|+++|+|.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~   65 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   65 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence            34567788899999999999999987764     367899999994

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.80  E-value=0.002  Score=55.82  Aligned_cols=42  Identities=26%  Similarity=0.269  Sum_probs=36.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ...++.+-|..|+||||+...||..+...|.+|++.+.|...
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            356777778999999999999999999888999999999764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.77  E-value=0.0016  Score=53.32  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=35.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++.+.|.+|+||||++..++..++..|.+|++++.+..
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            3567778999999999999999998888889999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.74  E-value=0.0011  Score=52.68  Aligned_cols=37  Identities=32%  Similarity=0.277  Sum_probs=31.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++.|..|+||||++..||..+...|.+.-.+|.|
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            4678899999999999999999999888666667654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.74  E-value=0.0015  Score=53.23  Aligned_cols=43  Identities=19%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP   66 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~   66 (276)
                      ......++++.|..|+||||++..|+..+. ..|.++..+|.|.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            334456777889999999999999999998 7899999998663

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.73  E-value=0.0017  Score=58.64  Aligned_cols=50  Identities=16%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~   67 (276)
                      .+..++.+  ....++.+.|..|+||||++.+++.....      .+.+|++||....
T Consensus       166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            34455532  22467788899999999999999876653      4578999998864

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.70  E-value=0.053  Score=50.63  Aligned_cols=43  Identities=30%  Similarity=0.332  Sum_probs=36.9

Q ss_pred             EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      .|.|+.| -.|+|||++|+.|+..|.++|+||..+=.||.-|..
T Consensus        14 ~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d   57 (550)
T 1vco_A           14 YVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVD   57 (550)
T ss_dssp             EEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSS
T ss_pred             EEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccC
Confidence            3456635 889999999999999999999999999999876654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.69  E-value=0.0027  Score=56.39  Aligned_cols=42  Identities=26%  Similarity=0.269  Sum_probs=36.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ...++.+-|..|+||||+...||..+...|.+|++.+.|...
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            356777778999999999999999999888999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.69  E-value=0.0018  Score=52.14  Aligned_cols=37  Identities=32%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+++.|.+|+||||++..++..+...|.+|+.+++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            5677889999999999999999999999999988763

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.68  E-value=0.0047  Score=65.72  Aligned_cols=52  Identities=19%  Similarity=0.094  Sum_probs=43.0

Q ss_pred             chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|..++.   =++..++.+.|.+|+||||++.++|..+++.|.+|++||+.....
T Consensus       370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~  424 (2050)
T 3cmu_A          370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  424 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred             HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH
Confidence            3555554   234578888999999999999999999999999999999997554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.67  E-value=0.0021  Score=51.85  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ....++++.|..|+||||++..||..+...|..+..+|.|.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~   63 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN   63 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence            34567788899999999999999999987788778889773

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.66  E-value=0.0016  Score=53.92  Aligned_cols=50  Identities=20%  Similarity=0.226  Sum_probs=39.3

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      .|+.++.+  +...++++.|.+|+|||++|.++|...+ +.|++|++++++..
T Consensus        18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER   70 (251)
T ss_dssp             TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence            45666642  3356788899999999999999998765 55889999999853

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.65  E-value=0.001  Score=57.40  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=33.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ..++.++|-.|+||||+|..|+..+...|.++.+||+|.-.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            34677889999999999999999998888999999999644

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.64  E-value=0.0022  Score=50.69  Aligned_cols=39  Identities=28%  Similarity=0.226  Sum_probs=33.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..++++.|..|+||||++..|+..+...|..+..+|.|.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            345677799999999999999999888899998888764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.59  E-value=0.0017  Score=51.44  Aligned_cols=36  Identities=19%  Similarity=0.048  Sum_probs=31.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD   63 (276)
                      ...+++.|.+|+||||++..++..+. ..|.+|+.++
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~   74 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD   74 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            46678889999999999999999998 7788888765

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.53  E-value=0.0024  Score=58.29  Aligned_cols=50  Identities=14%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      .|..++.+ .+..++++.|.+|+||||++.++|...+. .|.+|+++++...
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP  240 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            34444422 23467888899999999999999999997 5899999999843

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.52  E-value=0.0017  Score=60.24  Aligned_cols=50  Identities=8%  Similarity=0.029  Sum_probs=40.5

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~   67 (276)
                      .|..++.+ ....++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus       231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES  282 (503)
T ss_dssp             THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred             hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence            34455432 235678889999999999999999999987 999999999864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.51  E-value=0.0029  Score=57.99  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      +..++++.|.+|+||||++.++|..++. .|.+|++++++..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            3467888899999999999999999996 6899999999854

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.50  E-value=0.0051  Score=54.38  Aligned_cols=49  Identities=24%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~   67 (276)
                      ++.++..  +...++.+.|..|+||||++..++...+..      |.+|+.||....
T Consensus       120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            4455432  335778888999999999999999877432      358899998754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.47  E-value=0.0028  Score=50.77  Aligned_cols=35  Identities=20%  Similarity=0.108  Sum_probs=31.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ++.++.|..|+||||.+..++..+...|++|+++-
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~   38 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK   38 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            46788899999999999999999999999999974

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.43  E-value=0.0056  Score=49.99  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~   67 (276)
                      ..++.+.|..|+||||++..++..+..      .+.+++.++.+..
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~   70 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   70 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence            467788899999999999999986654      3557888988753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.42  E-value=0.004  Score=49.44  Aligned_cols=34  Identities=26%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ++++.|-.|+||||++..|+..+...|..|+-.|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            4677899999999999999999988898877555

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.41  E-value=0.002  Score=50.62  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++|-.|+||||++..||..+   |.....+|.|
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D   37 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence            568899999999999999988765   4456666776

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.40  E-value=0.0027  Score=59.66  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=35.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..++++.|..|+||||++..|+..+...|+++.++|.|.
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            466778899999999999999999999999999999883

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.38  E-value=0.0037  Score=53.60  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~   66 (276)
                      ....++++.|.+|+||||++.++|..++.. |.+|++++.+.
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            335677888999999999999999999876 88999999875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.37  E-value=0.0021  Score=56.98  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=42.1

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC--------CCcEEEEecC
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--------RPSVLIISTD   65 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--------G~kVlliD~D   65 (276)
                      ++++.+...+...........+++.|.+|+||||++..++..+...        +..++.+++.
T Consensus        27 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~   90 (384)
T 2qby_B           27 DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR   90 (384)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence            3444444455555555556678899999999999999999998765        7888888864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.35  E-value=0.0047  Score=48.40  Aligned_cols=38  Identities=24%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEec
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIIST   64 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~   64 (276)
                      ....+++.|.+|+|||+++..++..+..       .|.++..+++
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM   86 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence            3445677899999999999999999876       3455555544

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.33  E-value=0.003  Score=55.71  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             hccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCC
Q 023886           11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN   69 (276)
Q Consensus        11 ~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~   69 (276)
                      +++.+...+...+.......+++.|.+|+||||++..++..+...      +..++.+++....+
T Consensus        27 ~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   91 (387)
T 2v1u_A           27 ELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET   91 (387)
T ss_dssp             HHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence            334444444444444556678889999999999999999998765      66788888765443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.33  E-value=0.013  Score=61.64  Aligned_cols=61  Identities=16%  Similarity=0.091  Sum_probs=45.8

Q ss_pred             chhhhhcC---CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC--hhHHhcccc
Q 023886           18 SVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--LSDAFQQRF   78 (276)
Q Consensus        18 ~l~~~~~~---~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~--l~~~l~~~~   78 (276)
                      .|+.++..   +.-+|+-+.|..|+||||+|..++....++|.++++||+....+  ....+|.+.
T Consensus      1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~ 1483 (1706)
T 3cmw_A         1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI 1483 (1706)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCG
T ss_pred             HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCH
Confidence            45555543   22478888889999999999999999889999999999985433  345555543

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.30  E-value=0.0066  Score=48.95  Aligned_cols=36  Identities=8%  Similarity=-0.160  Sum_probs=33.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .++.++.|.-|.||||.+..+|..+..+|+||+++-
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            467899999999999999999999999999999995

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.25  E-value=0.0045  Score=48.42  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ....-+++.|..|+|||+++..++..+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            33445688899999999999999999876

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.24  E-value=0.0046  Score=47.67  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ....+++.|..|+||||++..++..+...|+++..++..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~   73 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA   73 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence            345677789999999999999999998889888888765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.20  E-value=0.0051  Score=53.36  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D   65 (276)
                      ..-+++.|..|+|||+++..+|..+. ..|++|+.+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            35577789999999999999999999 999999998764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.16  E-value=0.054  Score=48.53  Aligned_cols=27  Identities=33%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      +.+-|..|+||||+.-.|.....+.|+
T Consensus         6 I~iiG~~~~GKSTLi~~L~~~~~~~g~   32 (397)
T 1d2e_A            6 VGTIGHVDHGKTTLTAAITKILAEGGG   32 (397)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTTS
T ss_pred             EEEEeCCCCCHHHHHHHHhChhhhcCc
Confidence            456689999999999999887766654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.16  E-value=0.0063  Score=49.19  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++++.|-.|+||||++..|+..+...|..|..+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~   44 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   44 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence            46778899999999999999999999999986554

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.16  E-value=0.0058  Score=49.19  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++++.|-.|+||||++..||..+...| +|...+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~   39 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEW   39 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEET
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecC
Confidence            5678889999999999999999998777 7755443

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.13  E-value=0.0049  Score=48.29  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|.+|+||||+|..|+..    ......||.|
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d   35 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD   35 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence            457889999999999999998862    2346677775

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0056  Score=53.41  Aligned_cols=59  Identities=8%  Similarity=-0.084  Sum_probs=45.6

Q ss_pred             hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC-------CCcEEEEecCCC
Q 023886            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIISTDPA   67 (276)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~D~~   67 (276)
                      .++++.++..+...+......-++++|++|+|||+++..++..+.+.       +.+++-|++-..
T Consensus        26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~   91 (318)
T 3te6_A           26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL   91 (318)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence            45677777778888777777778999999999999999999999753       235666665443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.08  E-value=0.0033  Score=55.37  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             ccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 023886           12 LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTDP   66 (276)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---G~kVlliD~D~   66 (276)
                      ++.+...+...+.......+++.|.+|+||||++..++..+...   +..++.+++..
T Consensus        29 ~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~   86 (386)
T 2qby_A           29 IRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ   86 (386)
T ss_dssp             HHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            33333444444334556678889999999999999999988765   77888888653

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.07  E-value=0.0059  Score=53.95  Aligned_cols=58  Identities=21%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             ccccccchhhhhcCCceE--EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 023886           12 LEIPEGSVRNILEQDSLK--WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHN   69 (276)
Q Consensus        12 ~~~~~~~l~~~~~~~~~~--i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~   69 (276)
                      ++.+...+.....+....  .+++.|..|+||||++..++..+... +..++.+++....+
T Consensus        26 ~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~   86 (389)
T 1fnn_A           26 LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN   86 (389)
T ss_dssp             HHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred             HHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence            333444444443333334  78889999999999999999988777 68899999766554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.05  E-value=0.0046  Score=55.16  Aligned_cols=56  Identities=20%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             ccccch-hhhhcC--CceEEEEE--eCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCC
Q 023886           14 IPEGSV-RNILEQ--DSLKWVFV--GGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN   69 (276)
Q Consensus        14 ~~~~~l-~~~~~~--~~~~i~v~--s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~   69 (276)
                      .+...+ .....+  .....+++  .|.+|+||||++..++..+...      +..++.+++.+..+
T Consensus        33 ~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (412)
T 1w5s_A           33 ALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN   99 (412)
T ss_dssp             HHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred             HHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence            333344 444334  34567777  9999999999999999988764      67888888755444

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.04  E-value=0.015  Score=50.27  Aligned_cols=19  Identities=42%  Similarity=0.406  Sum_probs=15.5

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +.+.|.+||||||+.-.|.
T Consensus        13 v~ivG~~nvGKSTLin~l~   31 (308)
T 3iev_A           13 VAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHh
Confidence            4556899999999988764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.97  E-value=0.0061  Score=57.54  Aligned_cols=39  Identities=23%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D~   66 (276)
                      ..++++.|-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT  435 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence            46778889999999999999999999888 8999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.96  E-value=0.006  Score=51.30  Aligned_cols=33  Identities=15%  Similarity=0.091  Sum_probs=26.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++++.|..|+||||+|..||..+   |  ..+++.|.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~   34 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR   34 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence            568899999999999999998765   3  34678875

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.95  E-value=0.0041  Score=50.11  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++++.|-.|+||||++..|+..+   |  ..++|.|.-
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence            4567888999999999999998877   4  446788753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.95  E-value=0.0074  Score=56.30  Aligned_cols=39  Identities=21%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++++.|-+|+||||+|..||..|...+.++.+++.|
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D   72 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG   72 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence            356788999999999999999999999889999999988

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.94  E-value=0.0071  Score=57.52  Aligned_cols=40  Identities=28%  Similarity=0.219  Sum_probs=35.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ...++++.|-.|+||||++..|+..|.+.|..+..+|.|.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~   90 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   90 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence            4567888899999999999999999999999999998763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.92  E-value=0.0065  Score=48.92  Aligned_cols=40  Identities=23%  Similarity=0.223  Sum_probs=29.1

Q ss_pred             hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +......++++.|..|+||||++..|+..+   |  ...+|.|.-
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~   63 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF   63 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence            334445678888999999999999999877   5  456787753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.89  E-value=0.0054  Score=51.47  Aligned_cols=38  Identities=29%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..+.++++.|.+|+||||++..|+..+   |..+.++|.|.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~   67 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS   67 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence            446788999999999999999998765   34567889884

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.89  E-value=0.0042  Score=49.15  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|-.|+||||++..||..+   |.  -.+|.|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d   37 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD   37 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence            4567788999999999999999776   43  356766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.88  E-value=0.021  Score=53.23  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..++.+.|..|+||||++..++..+...|.+++.++...
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee  319 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE  319 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            467788899999999999999999888899998887653

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=95.86  E-value=0.0091  Score=55.81  Aligned_cols=41  Identities=12%  Similarity=-0.035  Sum_probs=27.6

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      +.+++|.-+......++...+..+...++++ -+|+|++-..
T Consensus       107 D~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~  147 (529)
T 2h5e_A          107 DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRD  147 (529)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSC
T ss_pred             CEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCc
Confidence            5566666655444556677777777778874 7788887543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.84  E-value=0.0058  Score=52.48  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=29.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ....+++++|.+|+||||++..|+..+   +.....||.|
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D   67 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   67 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence            346788999999999999999998654   2346778887

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.81  E-value=0.0068  Score=48.09  Aligned_cols=33  Identities=36%  Similarity=0.440  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++++.|-.|+||||++..|+..+   |..  ++|.|
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D   37 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD   37 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence            4678889999999999999999876   544  45655

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.80  E-value=0.011  Score=47.75  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++++.|-.|+||||++..|+..+...+..|.++.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            46788899999999999999999998898886554

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=95.76  E-value=0.13  Score=47.46  Aligned_cols=43  Identities=30%  Similarity=0.468  Sum_probs=37.1

Q ss_pred             EEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           29 KWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        29 ~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      |.+ |+.| -.|.||-.+|+.++..|..+|+||-.+=.||.-|..
T Consensus         4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd   48 (535)
T 3nva_A            4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVD   48 (535)
T ss_dssp             EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSS
T ss_pred             eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeec
Confidence            445 5555 689999999999999999999999999999987754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.75  E-value=0.0066  Score=47.14  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++++.|-.|+||||++..||..+   |..  .+|.|.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~--~i~~d~   34 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL---KYP--IIKGSS   34 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence            467889999999999999988765   443  578884

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=95.75  E-value=0.13  Score=45.18  Aligned_cols=37  Identities=19%  Similarity=-0.042  Sum_probs=31.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+++.++..--++||||++..|...+.++|.+|..+-
T Consensus       169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~  205 (350)
T 2g0t_A          169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLA  205 (350)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEc
Confidence            4566667667789999999999999999999998854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.67  E-value=0.0061  Score=47.50  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++.|-.|+||||++..||..+   |.  -++|.|
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d   34 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD   34 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence            457888999999999999998876   43  367776

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.66  E-value=0.013  Score=51.11  Aligned_cols=41  Identities=34%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D~~   67 (276)
                      .+.++.+.|..|+||||++..|+..+..  .+.+|.++..|..
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            4567888899999999999999988874  3568999999953

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.66  E-value=0.013  Score=48.42  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN   69 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~   69 (276)
                      ....+++++.|-.|+||||.+..|+..|.. .|++|.++.-.|.++
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t   63 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT   63 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence            344567788899999999999999999999 999999866667644

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.64  E-value=0.016  Score=46.85  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=35.4

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +...++.+.|..|+||||++..|+..+...|.++..|..|..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            446777888999999999999999999877878888888753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.63  E-value=0.0039  Score=50.43  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ++++.|..|+||||++..|+..+...|.+|.++.-
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence            56788999999999999999999988989888764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.62  E-value=0.0052  Score=48.25  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|..|+||||++..||..+   |  ..++|.|
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d   36 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD   36 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence            47778999999999999998766   3  4567776

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.56  E-value=0.015  Score=49.42  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=31.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC----------CCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV----------RPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----------G~kVlliD~D~~   67 (276)
                      ..++.+.|.+|+||||++..++..++.-          +.+|++++....
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~   79 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   79 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence            4567788999999999999999977642          357888887653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.54  E-value=0.017  Score=50.05  Aligned_cols=38  Identities=32%  Similarity=0.362  Sum_probs=30.1

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..+..++++++|..|+||||+|..||..+     ..-+|.+|.
T Consensus         6 ~~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   43 (316)
T 3foz_A            6 KASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS   43 (316)
T ss_dssp             -CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred             cCCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence            34456788999999999999999998764     356788885

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.54  E-value=0.022  Score=46.61  Aligned_cols=37  Identities=8%  Similarity=-0.126  Sum_probs=33.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ..+|.|..|.-|.||||.+..++..+..+|+||+++-
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            3567899999999999999999999999999999985

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.53  E-value=0.007  Score=48.69  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|..|+||||++..||..+   |..  .+|.|
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d   57 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD   57 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence            4567888999999999999999877   444  45666

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.52  E-value=0.015  Score=45.40  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=28.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++++.|..|+||||++..|+..+   |  ..++|.|.-
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~   42 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL   42 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence            4678888999999999999998766   4  456788753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.51  E-value=0.01  Score=55.12  Aligned_cols=39  Identities=13%  Similarity=-0.021  Sum_probs=34.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE-V-RPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~-G~kVlliD~D~   66 (276)
                      ..++++.|-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            356788999999999999999999997 6 47888999997

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.50  E-value=0.0078  Score=46.58  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      ++++.|..|+||||++..|    .+.|..++
T Consensus         3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i   29 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL----KERGAKVI   29 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence            5788899999999999988    55677654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.49  E-value=0.02  Score=46.88  Aligned_cols=39  Identities=28%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +++++.|-.|+||||.+..|+..|...|++|.+.. .|.+
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~~   45 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPGG   45 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSCS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCCC
Confidence            45788899999999999999999999999997654 4543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.47  E-value=0.0056  Score=46.73  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=36.1

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++..++..++......  .-+++.|..|+|||++|..++......+..+. +++..
T Consensus         8 ~~~~~~~~~~~~~a~~~--~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~   61 (145)
T 3n70_A            8 EWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT   61 (145)
T ss_dssp             HHHHHHHHHHHHHTTCC--SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred             HHHHHHHHHHHHHhCCC--CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence            34444444444433222  22577899999999999999887777677777 87764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.47  E-value=0.011  Score=46.78  Aligned_cols=33  Identities=27%  Similarity=0.161  Sum_probs=25.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|..|+||||+|..||..+   |.  ..||.|
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   35 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG   35 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence            3567888999999999999998765   43  457766

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.46  E-value=0.0047  Score=48.84  Aligned_cols=31  Identities=29%  Similarity=0.334  Sum_probs=25.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|-.|+||||+|..||..+   |..  ++|.|
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D   34 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTD   34 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCc
Confidence            46778999999999999998766   443  57877

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.45  E-value=0.011  Score=50.76  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEE-ecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLII-STDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlli-D~D~   66 (276)
                      +...++.+.|..|+||||++..|+..+...|  .++..+ ..|.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~   72 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   72 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence            4467778889999999999999999998765  445444 9985

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.44  E-value=0.0058  Score=53.38  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .+++++.|.+|+||||+|.++|..   .|.+|+.+++
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence            356688999999999999999986   6789999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.44  E-value=0.012  Score=46.58  Aligned_cols=34  Identities=26%  Similarity=0.210  Sum_probs=27.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++++.|..|+||||++..|+..+   |  ...+|.|
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d   38 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG   38 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence            35678888999999999999998765   3  4567776

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.44  E-value=0.016  Score=50.23  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=33.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..-+++.|.+|+||||++..++..+...|.++..++++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            34577889999999999999999998889999999875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.41  E-value=0.0066  Score=48.75  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=28.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~   66 (276)
                      .+++.|.+|+|||+++..++..+...+.+  ++-++...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~   78 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD   78 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence            37888999999999999999998776654  44444433

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.41  E-value=0.013  Score=51.45  Aligned_cols=34  Identities=26%  Similarity=0.194  Sum_probs=29.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++++|..|+||||+|..||..+.     +.+|++|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            5788999999999999999988653     788999953

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.38  E-value=0.011  Score=47.87  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=29.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH-----hCC-CcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA-----EVR-PSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la-----~~G-~kVlliD~D   65 (276)
                      +.|.++.|.+|+|||+.|..++..++     +.| ++|.+..+|
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            34678889999999999999877765     678 666666555

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.36  E-value=0.012  Score=46.73  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=26.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|..|+||||++..||..+  .|  .-.+|+|
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d   43 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG   43 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence            4567888999999999999888752  24  5567887

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.36  E-value=0.01  Score=47.49  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++++.|-.|+||||++..||..+  .|.++..++.
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~   38 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF   38 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence            457778999999999999998877  4677877664

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.34  E-value=0.012  Score=50.44  Aligned_cols=36  Identities=14%  Similarity=0.110  Sum_probs=30.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +.++.+++.|.+|+|||++|..+|..+   |.+++.+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~   69 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA   69 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence            345677788999999999999999887   778888875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.34  E-value=0.011  Score=47.41  Aligned_cols=36  Identities=28%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++++++.|..|+||||++..|+..+   |  ...+|+|
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d   47 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG   47 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence            3446678889999999999999998654   4  3567776

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.26  E-value=0.018  Score=49.76  Aligned_cols=42  Identities=29%  Similarity=0.335  Sum_probs=33.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~   67 (276)
                      ....++.+.|..|+||||++..|+..+.  -.+.+|.+|++|-.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            4456777889999999999999998876  34557999999853

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.26  E-value=0.014  Score=46.26  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++++.|..|+||||++..||..   .+...+.+|.|
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d   43 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD   43 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence            3467888899999999999988764   34445667766

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=95.24  E-value=0.067  Score=47.98  Aligned_cols=29  Identities=31%  Similarity=0.224  Sum_probs=23.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRP   57 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~   57 (276)
                      .-+.+.|..|+||||+...|...+.+.|+
T Consensus        12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~   40 (405)
T 2c78_A           12 VNVGTIGHVDHGKTTLTAALTYVAAAENP   40 (405)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhhhhhcCc
Confidence            34567799999999999999988777764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.16  E-value=0.0086  Score=47.72  Aligned_cols=33  Identities=30%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|..|+||||++..||..+   |  ...+|.|
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d   44 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG   44 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence            3567888999999999999998876   3  4567776

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.16  E-value=0.021  Score=53.84  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ..++++.|-+|+||||++..++..+...|++|+++-
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            357788999999999999999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.16  E-value=0.016  Score=46.50  Aligned_cols=34  Identities=35%  Similarity=0.257  Sum_probs=26.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++++.|..|+||||+|..||..+   |..  ++|.|
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d   52 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG   52 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence            34567888999999999999998876   444  46665

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.12  E-value=0.02  Score=45.18  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +++.+.|..|+||||++..|+..+...|.++--|-.|..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence            345555699999999999999999998888777766643

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.10  E-value=0.022  Score=54.45  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +.++.|.+|+|||++.+.+...+.+.|.+||++-.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            67899999999999999999999999999998764

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.10  E-value=0.065  Score=51.66  Aligned_cols=40  Identities=10%  Similarity=0.019  Sum_probs=25.5

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|.-+......++...+..+.+.++++ -+|+|++-.
T Consensus       102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~  141 (691)
T 1dar_A          102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDK  141 (691)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECTTS
T ss_pred             CEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCc
Confidence            4566666555444455666677777777776 477888744

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.09  E-value=0.026  Score=51.56  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~   64 (276)
                      .+++.|.+|+||||++..++..|...|+ +|+++-.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~   82 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP   82 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence            6788999999999999999999999987 7777743

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.03  E-value=0.018  Score=50.32  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++++.|..|+||||++..||..+     ...+||+|.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds   38 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS   38 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence            4578899999999999999998754     367889884

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.97  E-value=0.028  Score=48.13  Aligned_cols=49  Identities=20%  Similarity=0.246  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC---hhHHhcc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---LSDAFQQ   76 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~---l~~~l~~   76 (276)
                      ...+++.|..|+||||+|..+|..+...+..+..+|+.....   ....+|.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   98 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA   98 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCC
Confidence            356788899999999999999999988777899999874322   3455543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=94.95  E-value=0.011  Score=47.17  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++++.|..|+||||++..||..    |.  .++|+|.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~   40 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDA   40 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence            466788899999999999888864    54  4678883

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.92  E-value=0.011  Score=47.42  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++.+.|..|+||||++..||. +   |  +-++|+|
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d   32 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD   32 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence            567789999999999998887 4   5  5567776

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.91  E-value=0.036  Score=44.66  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=29.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++-|--|+||||.+..|+..|.+.|++|.+..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            567789999999999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.91  E-value=0.018  Score=44.69  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=26.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++++.|-.|+||||++..||..|   |..  ++|+|
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D   39 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD   39 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence            36678889999999999999988765   444  46776

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.90  E-value=0.038  Score=45.65  Aligned_cols=35  Identities=23%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      ..++++.|-.|+||||++..|+..+.. |.+|+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~   60 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR   60 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence            456788899999999999999999988 88886543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.83  E-value=0.017  Score=45.41  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=24.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++++.|-.|+||||++..||..+   |.  -.+|.|
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d   43 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS---GL--KYINVG   43 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence            457788999999999999998776   43  445655

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.81  E-value=0.11  Score=44.70  Aligned_cols=19  Identities=42%  Similarity=0.406  Sum_probs=16.3

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +.+-|.+||||||+.-.|.
T Consensus        10 V~ivG~~nvGKSTLln~l~   28 (301)
T 1wf3_A           10 VAIVGKPNVGKSTLLNNLL   28 (301)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5666999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.81  E-value=0.011  Score=46.02  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++++.|..|+||||++..||..+   |  ...+|.|
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d   36 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD   36 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence            457788999999999999888765   3  3567776

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.79  E-value=0.015  Score=46.89  Aligned_cols=37  Identities=27%  Similarity=0.221  Sum_probs=28.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +..++.+.|..|+||||++..|+..+.    .+.+++.|..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~   56 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF   56 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence            356677889999999999888775331    5889999953

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=94.78  E-value=0.033  Score=46.37  Aligned_cols=39  Identities=21%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCc-EEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k-VlliD~D~~~   68 (276)
                      +++++.|-.|+||||.+..|+..|...|.+ |.+. -.|.+
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~-rep~~   67 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT-REPGG   67 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee-cCCCC
Confidence            567888999999999999999999999999 5444 45543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.72  E-value=0.019  Score=45.50  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.++++.|-.|+||||++..||..+   |.  -.+|.|
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d   41 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG   41 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence            3467788999999999999998766   44  356776

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=94.69  E-value=0.044  Score=49.87  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=32.9

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +-|+||||++..|+.+|.+.|+++.+.=  .|+++.-.||.+
T Consensus        55 PaGEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~FGiK   94 (543)
T 3do6_A           55 PAGEGKTTTSIGLSMSLNRIGKKSIVTL--REPSLGPTLGLK   94 (543)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCHHHHHHSC
T ss_pred             CCCCCccchHHHHHHHHHhcCCeeEEEE--ecCCCCCcCCcc
Confidence            7799999999999999999999986543  566666677665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.67  E-value=0.016  Score=44.82  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=24.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|..|+||||++..|+..+   |..  ++|+|
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d   32 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVD   32 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence            36778999999999999998866   443  46776

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=94.66  E-value=0.12  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +.+.+.|.+|+||||+.-.|...
T Consensus        11 ~~I~IvG~~~aGKSTL~~~Ll~~   33 (693)
T 2xex_A           11 RNIGIMAHIDAGKTTTTERILYY   33 (693)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            34555679999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.62  E-value=0.03  Score=46.29  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D~~~   68 (276)
                      .+++++.|-.|+||||.+..|+..|...    |.+|.+.- .|.+
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r-ep~~   68 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR-EPGG   68 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE-SSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec-CCCC
Confidence            3567888999999999999999999988    99997543 4543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.61  E-value=0.032  Score=44.96  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++.+.|..|+||||++..|+..+..   ++.+++.|+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~   42 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY   42 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence            456677789999999999999887643   6889999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.60  E-value=0.028  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.044  Sum_probs=26.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++++.|..|+||||+|..|+..+   |  ...+++|
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~   61 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG   61 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence            35567888999999999999998766   4  4556665

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.59  E-value=0.029  Score=46.07  Aligned_cols=27  Identities=33%  Similarity=0.320  Sum_probs=23.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +..+|+|+-|.+|+||+|.|..||..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346788888999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.55  E-value=0.013  Score=45.93  Aligned_cols=30  Identities=30%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      +.++++.|-.|+||||++..||..+   |..++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i   34 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL---PGSFV   34 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence            3567888999999999999887654   55554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.53  E-value=0.032  Score=43.89  Aligned_cols=33  Identities=33%  Similarity=0.178  Sum_probs=25.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|..|+||||++..||..+   |.  ..+|.|
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d   36 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG   36 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence            3457888999999999999998765   43  456766

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.52  E-value=0.034  Score=44.67  Aligned_cols=36  Identities=28%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +...++.+.|..|+||||++..|+..+   |  .-+||+|.
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~   45 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDR   45 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcH
Confidence            335667778999999999999988754   5  56789883

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.46  E-value=0.026  Score=48.23  Aligned_cols=34  Identities=24%  Similarity=0.181  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|-+|+||||++..|+..+  .  ....||.|
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~--~--~~~~i~~D   35 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN--P--GFYNINRD   35 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence            3568899999999999999988632  2  35677776

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.45  E-value=0.021  Score=46.56  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=24.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++.|..|+||||++..||..+   |.  -.+|.|
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   37 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG   37 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence            46667999999999999999877   44  345664

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.43  E-value=0.043  Score=44.86  Aligned_cols=40  Identities=23%  Similarity=0.493  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHN   69 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D~~~~   69 (276)
                      +++++-|-.|+||||.+..|+..|...|. .|.+ --.|.++
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~-~rep~~t   44 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF-TREPGGT   44 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE-EESSCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee-eeCCCCC
Confidence            45778899999999999999999999998 6644 4455543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.38  E-value=0.045  Score=46.78  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~D   65 (276)
                      ..-+++.|.+|+|||++|..+|..+...+.    .++.++..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  108 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD  108 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence            345678899999999999999999987665    66666643

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.36  E-value=0.036  Score=50.45  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D   65 (276)
                      ..-+++.|.+|+||||++..+|..+...  |.+++.+++.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            4557888999999999999999999876  8899998875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.36  E-value=0.029  Score=45.68  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+++.|..|+||||++..||..+   |.  -.+|.|
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   36 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG   36 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence            457788999999999999998876   33  456765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.30  E-value=0.032  Score=48.98  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+++++.|..|+||||++..||..+     ..-+||+|..
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence            3588999999999999999998643     4678999963

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.29  E-value=0.03  Score=47.72  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.++++.|..|+||||+|..|+ .   .|.  -+||+|
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~---lg~--~~id~D  106 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-N---LGA--YIIDSD  106 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-H---HTC--EEEEHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-H---CCC--cEEehh
Confidence            36778888999999999999998 3   365  457887

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.04  E-value=0.079  Score=43.89  Aligned_cols=37  Identities=16%  Similarity=-0.045  Sum_probs=33.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.+|.|..|.-|.||||-+..++.....+|+||+++-
T Consensus        18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            3567899999999999999999999999999999997

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.03  E-value=0.027  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++++.|..|+||||++..||..+.   .  ..+|.|
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~---~--~~i~~d   37 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ---L--AHISAG   37 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence            4577889999999999999998763   2  445654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=94.01  E-value=0.048  Score=47.37  Aligned_cols=34  Identities=38%  Similarity=0.373  Sum_probs=27.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++++++|..|+||||+|..||..+     ..-+|++|.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   36 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS   36 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence            4578899999999999999998654     357888884

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.96  E-value=0.025  Score=45.25  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++.+.|..|+||||++..||..+   |  +-++|.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d   34 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence            67888999999999999998766   3  5567887

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=93.89  E-value=0.044  Score=44.26  Aligned_cols=30  Identities=27%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||+|..||..+   |.  ..+|.|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d   32 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG   32 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence            5668999999999999998765   43  446665

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.89  E-value=0.066  Score=44.41  Aligned_cols=40  Identities=28%  Similarity=0.306  Sum_probs=30.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhC-----CCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-----G~kVlliD~D~   66 (276)
                      ...++.+.|..|+||||++..|+..+...     .+++.+++.|.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~   68 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR   68 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence            34667777999999999999999877321     34677888874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.87  E-value=0.026  Score=46.20  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=25.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.++++.|..|+||||++..||..+   |.  ..+|.|
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d   39 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG   39 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence            3457788999999999999988754   43  456665

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.75  E-value=0.059  Score=45.29  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .....-+++.|.+|+|||++|..+|..   .|..+..+++
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i~~   97 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKICS   97 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEEC
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH---hCCCEEEEeC
Confidence            444566788899999999999999886   3566666654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=93.72  E-value=0.044  Score=43.58  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ++++.|-.|+||||++..||..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            467789999999999999998773

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.72  E-value=0.043  Score=44.43  Aligned_cols=30  Identities=23%  Similarity=0.165  Sum_probs=23.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||++..||..+   |..+  +|+|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~d   32 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKY---GIPQ--ISTG   32 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence            5677899999999999999876   5544  5554

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.71  E-value=0.041  Score=46.06  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      -+++.|..|+|||++|..++..+...+..+..+++...
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            36678999999999999999887777778888887643

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.61  E-value=0.051  Score=44.71  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+++.|..|+||||++..||..+   |  ...+|+|
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d   48 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG   48 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence            456778999999999999999876   3  3456765

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=93.61  E-value=0.078  Score=42.98  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.+++=|--|+||||.+..|+..|. +|++|.+.- .|.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~-eP~   39 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR-EPG   39 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE-SST
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee-CCC
Confidence            4567778999999999999999996 588887653 343

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.60  E-value=0.049  Score=44.57  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|..|+||||++..||..+   |.  -.+++|
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d   32 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG   32 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence            36788999999999999999877   44  346664

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.59  E-value=0.064  Score=50.91  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=29.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLII   62 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlli   62 (276)
                      .+++++.|.+|+||||++..+...+.+    .|.+|+++
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~  202 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  202 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence            467889999999999999999988874    46688875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.55  E-value=0.079  Score=45.02  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .-+++.|.+|+|||++|..+|..+   +.++..+++..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~   85 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK   85 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence            345677999999999999999877   66788888753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.51  E-value=0.11  Score=45.07  Aligned_cols=42  Identities=33%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~   67 (276)
                      +...++.+.|..|+||||++..|+..+... | .+|.+|..|+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            446778888999999999999999988754 5 57888888854

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.48  E-value=0.087  Score=46.92  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||+...++..+...|.+|+++|-+
T Consensus        38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56679999999999999999998889999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.44  E-value=0.1  Score=43.19  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+-+++.|.+|+|||++|..+|..+   |..+..+++..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~   74 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAE   74 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence            3446788999999999999998865   56777777753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.36  E-value=0.034  Score=44.73  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++++.|..|+||||++..|+..+
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3457888999999999999998766

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=93.35  E-value=0.07  Score=42.74  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=24.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++.+.|..|+||||++..||.    .|..  ++|+|.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~   34 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV   34 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence            4677889999999999988875    4654  468873

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.34  E-value=0.085  Score=48.33  Aligned_cols=39  Identities=18%  Similarity=0.090  Sum_probs=32.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++++.|-.|+||||++..||..+...+..+..++.|
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d   76 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   76 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence            345678889999999999999999998888888777755

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.31  E-value=0.048  Score=44.10  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=22.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+||||+|..||..+   |  ...+|.|
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d   32 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY---G--IPHISTG   32 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS---S--CCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---C--CcEEeHH
Confidence            5667999999999999987654   4  3456665

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.15  E-value=0.054  Score=44.11  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             chhhhhcCCc-eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           18 SVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        18 ~l~~~~~~~~-~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .++.++.+-+ ..-+++.|.+|+||||+|..+|..+
T Consensus        47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445544432 3457888999999999999999887

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.07  E-value=0.074  Score=49.38  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+.+++.|.+|+||||+|..+|..+   |..++-+++....
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~  114 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR  114 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcc
Confidence            4678889999999999999998876   7888888765433

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=93.06  E-value=0.1  Score=46.80  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++++++|..|+||||+|..||..+.     .-+|++|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence            45788999999999999999998774     34688774

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.04  E-value=0.071  Score=49.99  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~   66 (276)
                      ..++++.|..|+||||++..||..+... |.++.++|.|.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI  408 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence            4667778999999999999999999865 45788899874

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=93.01  E-value=0.069  Score=43.30  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++|+.++||.|+||+|+|--+...+
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence            356788889999999999998876544

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.00  E-value=0.036  Score=50.09  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ...++++++.|-+|+||||+|..|+..+     ....||.|.-.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  293 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG  293 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH
Confidence            3446788999999999999999887543     35677887643

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.99  E-value=0.1  Score=49.66  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=30.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEec
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIIST   64 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~   64 (276)
                      .+.++.|.+|+||||+.+.+...+.+ .+.+|+++-.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~  232 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP  232 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            46788899999999999999999887 6788887643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=92.93  E-value=0.052  Score=43.21  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=27.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++.|-.|+||||.|..||..    |.+|+.|+...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence            567789999999999998854    77899999864

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=92.92  E-value=0.064  Score=50.13  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=28.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSI----LLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~----~la~~G~kVlliD~D~   66 (276)
                      ..+++.+.|-||+||||+|..++.    .....-.-++-|+...
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~  194 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG  194 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence            468888899999999999998885    2222222456666544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.79  E-value=0.076  Score=48.67  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D   65 (276)
                      +++.|.+|+|||+++..+|..+..       .|.++.-+|+.
T Consensus       204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  245 (468)
T 3pxg_A          204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG  245 (468)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence            467799999999999999999865       35666666554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=92.73  E-value=0.07  Score=43.11  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=21.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++++.|..|+||||++..|+..+
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4678889999999999999887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.70  E-value=0.12  Score=41.84  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|..|+||||++..|+.    .|.  -++|+|
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D   35 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD   35 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence            35678889999999999988875    454  567886

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.69  E-value=0.29  Score=44.56  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=16.4

Q ss_pred             EEEEeCCCCchHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+++-|.+||||||+.-.|.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~   44 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIA   44 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHE
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            45666999999999988774

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.68  E-value=0.087  Score=41.56  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++++.|..|+||||++..|+.   ..+. ...+|.|
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g-~~~i~~d   35 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA---QLDN-SAYIEGD   35 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH---HSSS-EEEEEHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc---ccCC-eEEEccc
Confidence            5678889999999999999975   2222 2456655

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.67  E-value=0.081  Score=44.62  Aligned_cols=35  Identities=17%  Similarity=0.221  Sum_probs=26.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+|||++|..+|..+   +..+..+++.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~   85 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGS   85 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence            4456778999999999999887654   6667766654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=92.56  E-value=0.1  Score=42.07  Aligned_cols=29  Identities=28%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ...+++.|.+|+||||++..++..+...+
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~   73 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNCET   73 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            35778899999999999999998887543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.55  E-value=0.092  Score=42.62  Aligned_cols=23  Identities=26%  Similarity=0.185  Sum_probs=19.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++-|.+|+||+|.|..||..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            35667999999999999999765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=92.39  E-value=0.17  Score=43.69  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ   76 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~   76 (276)
                      +++.|.+|+|||++|..+|..+   |..+..+.+.+.....+.+|.
T Consensus        49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~   91 (331)
T 2r44_A           49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGT   91 (331)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCc
Confidence            6778999999999999998765   566777777766555666654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=92.29  E-value=0.18  Score=50.90  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHH--HH-hCCCcEEEEecCCCCCh
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSIL--LA-EVRPSVLIISTDPAHNL   70 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~--la-~~G~kVlliD~D~~~~l   70 (276)
                      ...+++.+.|-||+||||+|..++..  .. .....++.++.+...+.
T Consensus       148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~  195 (1221)
T 1vt4_I          148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP  195 (1221)
T ss_dssp             CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred             CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence            34678889999999999999999853  33 33557999998866554

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=92.23  E-value=0.14  Score=50.20  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD   63 (276)
                      .+.++.|.+|+||||+.+.++..+.+ .|.+|+++-
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a  407 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA  407 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence            46788999999999999999999987 578888764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=92.22  E-value=0.13  Score=45.54  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      -+++.|..|+|||++|..+|..+   |..+..+|+..
T Consensus        74 ~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~  107 (376)
T 1um8_A           74 NILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS  107 (376)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence            46778999999999999999876   67777777653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=92.22  E-value=0.1  Score=48.99  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHH---Hh-CCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILL---AE-VRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l---a~-~G~kVlliD~D~~   67 (276)
                      ...+++.+.|-||+||||+|..++...   .. ....|..++.+..
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            346788999999999999999988643   22 2235787777644

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=92.07  E-value=0.057  Score=46.27  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~   64 (276)
                      +++.|.+|+||||++..+|..+...+.  .++-+++
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~   84 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNA   84 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence            778899999999999999998865443  3444443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=92.04  E-value=0.093  Score=41.26  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+++++.|..|+||||++..|+..+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3567888999999999999988765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=92.03  E-value=0.12  Score=44.57  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ....+++++|..|+|||+++..+|..+   |.+++-+++..
T Consensus        46 ~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~   83 (324)
T 3u61_B           46 KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD   83 (324)
T ss_dssp             CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence            345678999999999999999998765   67788777643

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=92.02  E-value=0.18  Score=41.86  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=25.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -+++.|..|+||||++..+|..+   +..+..++..
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~   79 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS   79 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence            36778999999999999998765   4556666543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.00  E-value=0.11  Score=43.02  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +.++++.|..|+||||++..||..+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567788999999999999999776

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=91.99  E-value=0.054  Score=50.51  Aligned_cols=40  Identities=13%  Similarity=-0.102  Sum_probs=29.8

Q ss_pred             eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      +.+++|.-+......++...+..+...++++ -+|+|++-.
T Consensus       107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl  146 (528)
T 3tr5_A          107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDR  146 (528)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTS
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCC
Confidence            6677777666656667778888888888876 678898754

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=91.94  E-value=0.24  Score=39.85  Aligned_cols=37  Identities=16%  Similarity=-0.045  Sum_probs=33.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.++.|+.|.-|.||||--...+.....+|+||+++.
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k   55 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   55 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence            3568899999999999999999988889999999996

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=91.93  E-value=0.16  Score=43.44  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l   74 (276)
                      ..+++.|..|+|||++|..++..+   |.++..+++.........+
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~   81 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLA   81 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHH
Confidence            456788999999999999998866   5677777776554444433

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=91.90  E-value=0.33  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=17.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ++.+.+-|..++||||+.-.|.
T Consensus        21 m~~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           21 MANVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEEEESTTSSHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3356777899999999988775

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.89  E-value=0.049  Score=46.61  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=27.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~D   65 (276)
                      +++.|.+|+||||++..+|..+...+.  .++-+++.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~   81 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS   81 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence            788899999999999999999865433  45555544

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=91.82  E-value=0.24  Score=41.72  Aligned_cols=49  Identities=4%  Similarity=-0.134  Sum_probs=38.1

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      |+.++.+  +..+++.++|-+|.||||++..++...+++|.+++++..+-.
T Consensus        10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~   60 (260)
T 3bs4_A           10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP   60 (260)
T ss_dssp             HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            4555543  335666677777777779999999999999999999999943

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=91.81  E-value=0.24  Score=41.60  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~   64 (276)
                      -.+..++.+.|..|+||||+...++..+... ..+|.+.+-
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            3445677888999999999999999888654 446665543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.79  E-value=0.11  Score=44.92  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=30.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..+++++|..|+||||+...|...  ..|+|+.+|.-|.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aVi~~d~   40 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF   40 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh--cCCCcEEEEEecC
Confidence            567888999999999998887754  2689999998775

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=91.77  E-value=0.13  Score=41.74  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++.+.|..|+||||++..|+..+   |  +-.+|.|
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g   37 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG   37 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence            46677999999999999988755   3  3456765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.76  E-value=0.073  Score=46.36  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=27.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++.|..|+||||++..+|..+...+.++.++..+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~   84 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA   84 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence            677899999999999999999875544444555543

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=91.76  E-value=0.36  Score=40.61  Aligned_cols=46  Identities=28%  Similarity=0.484  Sum_probs=38.0

Q ss_pred             eEEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           28 LKWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        28 ~~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      +|.+ ++.| -.|.||-.+|+.+|..|..+|+||-++=+||.-|..-.
T Consensus        23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~G   70 (295)
T 2vo1_A           23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAG   70 (295)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--
T ss_pred             ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCC
Confidence            4445 5555 88999999999999999999999999999998775433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=91.73  E-value=0.28  Score=47.31  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=24.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ...+|++ -|..|+||||+.-.|.      |.+++.++.+|.
T Consensus        68 ~~~~V~V-vG~~naGKSSLlNaLl------g~~~~~v~~~p~  102 (695)
T 2j69_A           68 GVFRLLV-LGDMKRGKSTFLNALI------GENLLPSDVNPC  102 (695)
T ss_dssp             CCEEEEE-ECCTTSCHHHHHHHHH------TSSCSCCCCCTT
T ss_pred             CCCEEEE-ECCCCCCHHHHHHHHh------CCCCCCCCCCCC
Confidence            3455554 4899999999988776      667666655554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.72  E-value=0.17  Score=43.95  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=27.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+|||++|..+|..+  .+..+..+++.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~   80 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS   80 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence            3556777999999999999999876  35567767664

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.57  E-value=0.12  Score=41.19  Aligned_cols=25  Identities=24%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..++++.|..|+||||++..|+..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3467788999999999999888765

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=91.56  E-value=0.25  Score=43.55  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=31.9

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEe
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS   63 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD   63 (276)
                      ++.+...+ .-++.+.|..|+||||+...++..+... |.+++.++
T Consensus       115 l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          115 FKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             HHHHHHCS-SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             HHHHHhCC-CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            44444333 3477888999999999999999888765 66665544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=91.56  E-value=0.13  Score=50.89  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=29.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D   65 (276)
                      -+++.|.+|+||||++..+|..+..       .|.++..+|+.
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~  235 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG  235 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence            3567799999999999999999876       47788888765

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=91.41  E-value=0.24  Score=43.91  Aligned_cols=39  Identities=18%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST   64 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~   64 (276)
                      .+..++.+.|..|+||||+...|+..+... ..+|+.++-
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~  173 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED  173 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence            345677788999999999999999988765 456777763

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.24  E-value=0.21  Score=43.10  Aligned_cols=35  Identities=17%  Similarity=0.077  Sum_probs=28.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++++.|..|+||||++..++..+   +.+++.+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence            478899999999999999988765   34688898764

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=91.23  E-value=0.31  Score=39.89  Aligned_cols=40  Identities=13%  Similarity=-0.100  Sum_probs=32.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE--ecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII--STDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli--D~D~~   67 (276)
                      -.|.++.|--|.||||.....+..+..+|++|+++  ..|..
T Consensus        28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R   69 (219)
T 3e2i_A           28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR   69 (219)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence            46778888999999999999999999999999999  44543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.19  E-value=0.15  Score=42.31  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++.+.|..|+||||++..||..+   |  ...+|.|
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g   41 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence            457788999999999999998776   3  4567776

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=91.10  E-value=0.21  Score=49.01  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D   65 (276)
                      .+.++.|.+|+|||++.+.+...+.+ .+.+||++-.-
T Consensus       376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t  413 (802)
T 2xzl_A          376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS  413 (802)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence            46788899999999999999988876 68899988543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=91.07  E-value=0.18  Score=43.20  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=26.3

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ..+.+++.|.+|+||||+|..+|..+   +...+.+++
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~   82 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG   82 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence            34567778999999999999998764   455555553

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=91.06  E-value=0.21  Score=42.31  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=26.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+||||+|..+|..+   +....-+++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~   88 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAA   88 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEEST
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHH
Confidence            4556788999999999999988755   5566666654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=90.96  E-value=0.19  Score=44.19  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=26.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .-+++.|.+|+|||++|..+|..+   |....-+++-
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~   85 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT   85 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence            346678999999999999999876   6667666653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=90.95  E-value=0.1  Score=41.70  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=17.7

Q ss_pred             EEEEeCCCCchHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~   50 (276)
                      .++++|..|+||||+...|..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877644

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.92  E-value=0.35  Score=41.82  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh---CCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE---VRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~---~G~kVlliD~   64 (276)
                      +++.|.+|+||||++..+|..+..   ...++.-++.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~   97 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA   97 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence            778899999999999999999863   2334544443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=90.73  E-value=0.18  Score=44.50  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .+...+.......+++.|..|+||||++..||..+.
T Consensus        14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            344444444445567789999999999999998775

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=90.68  E-value=0.16  Score=40.35  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .++.+.|..|+||||++..|+..+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            467788999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=90.67  E-value=0.28  Score=42.35  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      .+-+++.|.+|+|||++|..+|..+   +..+..+++
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~   84 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS   84 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence            3456778999999999999998764   566777765

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=90.65  E-value=0.23  Score=43.66  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=27.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|..|+|||++|..+|..+   |..+..+++.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~  151 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISAS  151 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence            4456777999999999999998654   6777777764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=90.57  E-value=0.13  Score=44.36  Aligned_cols=56  Identities=14%  Similarity=0.213  Sum_probs=38.5

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .++..+...+..+....  .-+++.|..|+|||++|..++......+..++.+++..-
T Consensus         9 ~~~~~~~~~~~~~a~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A            9 PAMQHLLNEIAMVAPSD--ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             HHHHHHHHHHHHHCSTT--SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             HHHHHHHHHHHHHhCCC--CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            34444444444443222  235678999999999999999877777788888887643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=90.49  E-value=0.25  Score=43.42  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -+++.|.+|+|||++|..+|..+   |..+..+++
T Consensus        86 ~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~  117 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS  117 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence            35666999999999999999876   566666654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.46  E-value=0.69  Score=42.85  Aligned_cols=40  Identities=20%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHH-HHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILS-ILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA-~~la~~G~kVlliD~D~   66 (276)
                      ...++.+.|..|+||||++..++ ..+...|..++.|+...
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            34667777999999999999964 23333366688888765

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=90.43  E-value=0.086  Score=44.93  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~D   65 (276)
                      +++.|..|+|||+++..+|..+...+.  .++-+++.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~   77 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS   77 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence            778899999999999999998865433  45555554

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.43  E-value=0.31  Score=43.99  Aligned_cols=46  Identities=20%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++.++. .+..++.+.|..|+||||+...++..+.....+|..++-+
T Consensus       159 L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          159 FRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             HHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            344443 4456788889999999999999988876555567766533

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=90.39  E-value=0.19  Score=40.44  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .++++++|..|+||||+...|+..+
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhC
Confidence            5678889999999999999887543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=90.36  E-value=0.17  Score=44.05  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..+++.|.+|+||||++..+|..+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            557788999999999999999877

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.21  E-value=0.11  Score=41.86  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++.|..|+||||++..||..+   |  .-++|.|.
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d~   36 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASEL---S--MIYVDTGA   36 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc---C--CceecCCh
Confidence            47788999999999998887654   4  45678773

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=90.13  E-value=0.29  Score=44.10  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      +++-|..|+|||+....+...+.+.|.+|+++|  |.+...
T Consensus        56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~D--pkge~~   94 (437)
T 1e9r_A           56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD--PNGDML   94 (437)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE--ETTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe--CCCchh
Confidence            556689999999998888888888999999987  445443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.08  E-value=0.23  Score=40.75  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=25.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++.+.|..|+||||++..||..+   |  ...+|.|
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d   48 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG   48 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence            4567778999999999999888755   4  4567877

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=90.02  E-value=0.38  Score=46.68  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++.|.+|+|||++|..+|..+...+..+.-||+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s  558 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS  558 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence            467789999999999999999998888889999886

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.02  E-value=0.2  Score=40.55  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=24.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+.+++.|..|+||||+|..|+    ++|.  -+|..|
T Consensus        34 g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD   65 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELV----QRGH--RLIADD   65 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred             CEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence            3557788999999999887665    5566  566777

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.00  E-value=0.17  Score=41.67  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +++++.|-.|+||||++..|+..+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4577789999999999999998773

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=89.88  E-value=0.87  Score=43.56  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=18.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .+.+.+-|.+|+||||+.-.|....
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~   33 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKT   33 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhc
Confidence            3445555779999999999988543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=89.78  E-value=0.25  Score=39.03  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=19.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      -+++.|..|+||||+|..|..    +|++
T Consensus        18 gvli~G~SGaGKStlal~L~~----rG~~   42 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALID----RGHQ   42 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred             EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence            367779999999999887764    6764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.77  E-value=0.38  Score=43.51  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=28.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++=+...|.+|+|||++|.++|..+   |..++.|++.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~  240 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS  240 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence            345557778999999999999998765   5677777654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=89.76  E-value=0.053  Score=41.05  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=25.3

Q ss_pred             hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHH
Q 023886           10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +.+..++..+....... . -+++.|..|+|||++|..++..
T Consensus        11 ~~~~~l~~~~~~~~~~~-~-~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           11 AAIQEMNREVEAAAKRT-S-PVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             HHHHHHHHHHHHHHTCS-S-CEEEEEETTCCHHHHHGGGCCT
T ss_pred             HHHHHHHHHHHHHhCCC-C-cEEEECCCCccHHHHHHHHHHh
Confidence            34444455554443322 2 2566899999999998887754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=89.33  E-value=0.22  Score=41.41  Aligned_cols=25  Identities=32%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..++.+.|..|+||||++..||..|
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            3466777999999999999998554

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=89.33  E-value=0.26  Score=42.39  Aligned_cols=33  Identities=15%  Similarity=0.092  Sum_probs=27.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .++++.|..|+||||++..++..+   |  ++.++++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence            578889999999999999987653   3  88888764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.25  E-value=0.24  Score=43.31  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      +.+++.|.+|+|||++|..+|..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            56788899999999999999998853

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=89.24  E-value=0.21  Score=45.51  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +...+......-+++.|.+|+||||+|..+|..+
T Consensus        41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~   74 (447)
T 3pvs_A           41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA   74 (447)
T ss_dssp             HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence            3444444444457888999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.21  E-value=0.3  Score=38.91  Aligned_cols=26  Identities=42%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      +.+.|..|+||||+...++..+...|
T Consensus         4 i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            4 VFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCChHHHHHHHHHhhcccCC
Confidence            56679999999999999999888667

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=89.15  E-value=0.56  Score=40.32  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC---CCcEEEEecC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTD   65 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---G~kVlliD~D   65 (276)
                      .+++.+........++.|..|+||||+|..+|..+...   ...++.++.+
T Consensus         8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~   58 (305)
T 2gno_A            8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   58 (305)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence            35555554445677889999999999999999864322   3467777764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=89.12  E-value=3.1  Score=42.53  Aligned_cols=29  Identities=28%  Similarity=0.173  Sum_probs=22.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ..-+++-|..++||||+.-.|.....+.|
T Consensus       296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G  324 (1289)
T 3avx_A          296 HVNVGTIGHVDHGKTTLTAAITTVLAKTY  324 (1289)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHHHHS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhhcccc
Confidence            34456778999999999999987665554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=89.02  E-value=0.3  Score=38.49  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +.+.|..|+||||+...++..+.
T Consensus         3 i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45679999999999999998873

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=89.01  E-value=0.22  Score=41.63  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++++.|..|+||||++..||..+   |.  -.+|.|
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~l---g~--~~~d~d   80 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSL---GY--TFFDCD   80 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence            457778999999999999999876   33  466766

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=89.00  E-value=0.69  Score=41.26  Aligned_cols=19  Identities=32%  Similarity=0.282  Sum_probs=15.3

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +.+-|..|+||||+...|.
T Consensus        11 I~vvG~~~~GKSTLi~~L~   29 (403)
T 3sjy_A           11 IGVVGHVDHGKTTLVQAIT   29 (403)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4556899999999977764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=88.96  E-value=0.24  Score=39.62  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +++++.|..|+||||+...|+..+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4567889999999999999987653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=88.92  E-value=0.33  Score=39.84  Aligned_cols=34  Identities=15%  Similarity=0.041  Sum_probs=27.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..|+.++|..|+||||++..||..|   |..  ++|.|.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~~   47 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDDI   47 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence            4578889999999999999999776   444  578663

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=88.78  E-value=0.4  Score=47.26  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..+++.|..|+|||++|..+|..+...+..++.||+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~  626 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE  626 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence            45678899999999999999999988888899998874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=88.59  E-value=0.16  Score=46.48  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecCCCCChhH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSD   72 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D~~~~l~~   72 (276)
                      .++.+-|..|+||||+...|+..+...+- +++++|.|+..++..
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~  183 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFT  183 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeee
Confidence            34445589999999999999988765544 667788887554433

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=88.57  E-value=0.42  Score=41.19  Aligned_cols=35  Identities=23%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .-+++.|..|+|||++|..+|..   .|..+..+++..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~   90 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM   90 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence            34678899999999999998765   356666666643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.53  E-value=0.31  Score=47.36  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      +++.|.+|+|||++|..+|..+..
T Consensus       204 vLL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          204 PVLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             eEEECCCCCCHHHHHHHHHHHHhc
Confidence            567799999999999999999854

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=88.33  E-value=0.39  Score=43.57  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=27.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+|||++|..+|..+  .+..++.+++.
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~  202 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS  202 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence            3556777999999999999999875  35566666654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=88.33  E-value=0.29  Score=44.50  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +-+++.|.+|+|||++|..+|..+.
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            4466789999999999999998874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=88.29  E-value=0.29  Score=39.97  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ..++++.|..|+||||+...|+..+.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            45788899999999999998887653

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=88.17  E-value=0.37  Score=42.01  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ...+++.|..|+||||++..+|..+..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456788999999999999999988753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.14  E-value=0.37  Score=48.90  Aligned_cols=42  Identities=19%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D~~   67 (276)
                      ...+++.+.|-||+||||+|..++.....    ....|..++....
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~  190 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ  190 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence            45678888899999999999998876532    2346888887653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=87.92  E-value=0.29  Score=40.43  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=22.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++.|..|+||||++..+|..+.   ...+.++
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~   81 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR---VPFITAS   81 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---CCEEEee
Confidence            67789999999999999987652   3344454

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=87.62  E-value=0.19  Score=41.85  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+|||++|..+|..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6678999999999999998865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=87.60  E-value=0.36  Score=39.47  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=27.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ...++.+-|..|+||||++..|+..    |.+|.+..-+
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            3567788899999999998888765    5678777554

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=87.49  E-value=0.3  Score=42.37  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +++.|..|+||||++..+|..+-
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            77789999999999999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.44  E-value=0.53  Score=36.97  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             ccchhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886           16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        16 ~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ..-++.++..+..+|+++ |.+||||||+...+.
T Consensus        18 ~~~~~~~~~~~~~ki~v~-G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           18 GSLFSRIFGKKQMRILMV-GLDAAGKTTILYKLK   50 (192)
T ss_dssp             CCGGGGTTTTSCEEEEEE-ESTTSSHHHHHHHHC
T ss_pred             HHHHHHhccCCccEEEEE-CCCCCCHHHHHHHHH
Confidence            334455555566666665 689999999988763

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=87.37  E-value=0.3  Score=39.22  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=25.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .|+.++|--|+||||++..||..|   |..  ++|.|
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D~~   38 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHY---NIP--LYSKE   38 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT---TCC--EECHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHh---CcC--EECHH
Confidence            467888999999999999988766   555  44643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=87.32  E-value=0.41  Score=39.07  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+++++.|-.|+||||.+..|+..|..   ++.++-
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~   37 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK   37 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence            356788899999999999999998865   454443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=87.29  E-value=0.6  Score=45.24  Aligned_cols=28  Identities=25%  Similarity=0.276  Sum_probs=23.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV   55 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~   55 (276)
                      ..-+++.|.+|+|||+++..+|..+...
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~l~~~  234 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWRIVQG  234 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence            3445778999999999999999988753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=87.28  E-value=0.14  Score=42.90  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .++++++-|-.|+||||++..|+..+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35677888999999999999998776

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=87.18  E-value=0.56  Score=42.64  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=25.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.|.+|+||||+|..||..+   |...+.+|+
T Consensus        53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~   83 (444)
T 1g41_A           53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA   83 (444)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence            6667899999999999988765   667777776

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=87.16  E-value=0.49  Score=41.03  Aligned_cols=30  Identities=17%  Similarity=0.118  Sum_probs=24.8

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ++.....++.|..|+|||++|..+|..+-.
T Consensus        21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           21 GRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            344556788899999999999999998864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=87.06  E-value=0.73  Score=44.62  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -+++.|.+|+|||++|..+|..+   |....-+|+.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s  522 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS  522 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEech
Confidence            46778999999999999999988   6778888875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=86.99  E-value=0.48  Score=36.57  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=24.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ++..++.+.|..|+||||+...++..+...|
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G   61 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCCCCC
Confidence            4456777889999999999999998883334

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=86.95  E-value=0.41  Score=37.34  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=15.8

Q ss_pred             EEEEeCCCCchHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA   49 (276)
                      -+++-|.+|+||||+...|.
T Consensus        50 ~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            34555899999999988775

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=86.75  E-value=0.64  Score=41.18  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|..|+|||++|..+|..   .|..+..+++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~  182 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAA  182 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHH
Confidence            345678899999999999988654   46777777764

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=86.67  E-value=0.46  Score=39.46  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV   59 (276)
                      .++.++|+.|+||||+|.-|+..   .|..+
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~   29 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK   29 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence            46778899999999999877543   46554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=86.63  E-value=0.38  Score=40.60  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=24.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.+.|.+|+||||++..+|..+   +...+.++..
T Consensus        47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~   78 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGP   78 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETT
T ss_pred             EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcH
Confidence            6777999999999999988753   4456666654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=86.61  E-value=0.51  Score=36.61  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=16.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ...+|+ +-|.+||||||+...+.
T Consensus        15 ~~~ki~-ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           15 QEVRIL-LLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             SCEEEE-EEESTTSSHHHHHHHHC
T ss_pred             CceEEE-EECCCCCCHHHHHHHHh
Confidence            334554 45799999999987764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=86.56  E-value=0.53  Score=36.68  Aligned_cols=30  Identities=20%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +..+-.....+|+++ |..|+||||+...|.
T Consensus        15 ~~~~~~~~~~~i~v~-G~~~~GKSsli~~l~   44 (195)
T 1svi_A           15 PEQYPEGGLPEIALA-GRSNVGKSSFINSLI   44 (195)
T ss_dssp             GGGSCCSCCCEEEEE-EBTTSSHHHHHHHHH
T ss_pred             hhhCCCCCCCEEEEE-CCCCCCHHHHHHHHh
Confidence            333333344555554 799999999988775

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=86.54  E-value=0.75  Score=42.89  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=27.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..++++.|.+|+||||++..+|..+   +....-|+++
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~  142 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG  142 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence            4567888999999999999999887   3445555554

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.53  E-value=0.5  Score=42.84  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=27.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++=+...|.+|+|||++|.++|..+   |...+.+++.
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s  249 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP  249 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence            334556677999999999998888654   5677777654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=86.51  E-value=0.5  Score=42.01  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=23.2

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      -+..+++.+.|..|+||||++..|+..+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3455678889999999999999999754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.36  E-value=0.51  Score=42.80  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=27.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++=++..|.+|+|||++|.++|..+   |...+.|++.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s  249 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS  249 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence            34556677999999999999988754   5677777764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=86.33  E-value=0.53  Score=36.39  Aligned_cols=30  Identities=20%  Similarity=0.353  Sum_probs=17.0

Q ss_pred             hhhhhc-CCceEEEEEeCCCCchHHHHHHHHH
Q 023886           19 VRNILE-QDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        19 l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ++.++. .+..+|++ -|.+|+||||+...+.
T Consensus         9 ~~~~~~~~~~~~i~v-~G~~~~GKssl~~~l~   39 (186)
T 1ksh_A            9 LKKMKQKERELRLLM-LGLDNAGKTTILKKFN   39 (186)
T ss_dssp             --------CCEEEEE-ECSTTSSHHHHHHHHT
T ss_pred             HHhhcccCCeeEEEE-ECCCCCCHHHHHHHHh
Confidence            344444 34445544 4899999999987765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=86.08  E-value=0.37  Score=37.41  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=17.3

Q ss_pred             eEEEEEeCCCCchHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSI   47 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~   47 (276)
                      ..++.+.|..|+||||++..
T Consensus         9 gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHH
Confidence            45677889999999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=86.06  E-value=4.8  Score=38.72  Aligned_cols=41  Identities=15%  Similarity=0.096  Sum_probs=32.4

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      .+++++|.-.-.-.-.+++.+++.+.++++++ -+++|++-.
T Consensus       109 ~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr  149 (709)
T 4fn5_A          109 LDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDR  149 (709)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSS
T ss_pred             hCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEccccc
Confidence            36677777776666778899999999999987 778998843

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=86.05  E-value=0.63  Score=39.08  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+...|...++-.+++++|+.+-+|.|+     .+|..|++.|.+|+++|
T Consensus        18 ~~~~~m~~~~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~   62 (273)
T 3uf0_A           18 LYFQSMTGPFSLAGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG   62 (273)
T ss_dssp             -------CTTCCTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred             cchhhcccccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence            3444454444445577888888999997     57788899999999998

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=86.01  E-value=0.43  Score=40.12  Aligned_cols=30  Identities=27%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++.|..|+||||++..+|..+.   ...+.++
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~  105 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR---VPFITAS  105 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcC---CCEEEec
Confidence            67789999999999999987653   3445554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=85.99  E-value=0.59  Score=36.61  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=17.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +..+|++ -|.+||||||+...|..
T Consensus        27 ~~~ki~v-~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAI-FGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred             CceEEEE-ECCCCCCHHHHHHHHHh
Confidence            3455554 47899999999877664

>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A

Probab=85.97  E-value=0.89  Score=39.32  Aligned_cols=34  Identities=32%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +.|.|-|- -||+|||-++..|+..|.  ++++.+|.
T Consensus        37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ils   71 (315)
T 4ehx_A           37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILS   71 (315)
T ss_dssp             CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEE
T ss_pred             CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEe
Confidence            34455555 999999999999999884  45566654

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*

Probab=85.88  E-value=5.6  Score=34.77  Aligned_cols=39  Identities=10%  Similarity=0.029  Sum_probs=32.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ..+++|+|++. ||-|=-+-...||.+|.++|++|.++-.
T Consensus        18 ~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~Gh~V~v~~~   56 (415)
T 3rsc_A           18 RHMAHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYVTA   56 (415)
T ss_dssp             -CCCEEEEECC-SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCEEEEEeC-CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence            34578887765 7889889999999999999999999984

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=85.73  E-value=0.5  Score=37.80  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..++.+.|..|+||||+...++..+
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4567788999999999999998766

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=85.47  E-value=0.76  Score=38.06  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ..++++|+.+-||.|+     .+|..|++.|.+|.++|-++
T Consensus        11 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGA-----AIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            3467788888999998     46777888999999998774

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=85.34  E-value=0.7  Score=36.83  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=16.0

Q ss_pred             EEEeCCCCchHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +++-|.+|+||||+...|..
T Consensus        15 i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           15 IIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            44558999999999887764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=85.27  E-value=0.35  Score=39.40  Aligned_cols=25  Identities=24%  Similarity=0.186  Sum_probs=15.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH-HHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS-ILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA-~~l   52 (276)
                      ..++.+.|..|+||||++..|+ ..+
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3567788999999999999988 654

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=85.13  E-value=0.78  Score=36.32  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=25.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV------RPSVLII   62 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlli   62 (276)
                      +++.+..|.|||.++...+..+...      +.+++++
T Consensus        51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil   88 (216)
T 3b6e_A           51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL   88 (216)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence            6677899999999999888766532      5678776

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.05  E-value=0.54  Score=42.16  Aligned_cols=35  Identities=23%  Similarity=0.176  Sum_probs=26.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++=+...|.+|+|||++|.++|..+   |...+.|++.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s  216 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA  216 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence            4446777999999999999888754   5667777664

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=84.96  E-value=0.44  Score=37.22  Aligned_cols=19  Identities=21%  Similarity=0.385  Sum_probs=15.5

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +++-|.+||||||+...+.
T Consensus        24 i~vvG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFL   42 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            4556899999999987765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=84.90  E-value=0.46  Score=38.52  Aligned_cols=31  Identities=23%  Similarity=0.186  Sum_probs=24.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI   61 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll   61 (276)
                      ..++.+.|..|+||||+.-.|+..+ . |. +.+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~-i~~   53 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF-P-NY-FYF   53 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS-T-TT-EEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC-C-Cc-EEE
Confidence            4567777999999999999998866 3 53 544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=84.90  E-value=0.53  Score=36.57  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +.++.|..|+||||+.-.+...+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            667889999999999999988775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=84.78  E-value=0.55  Score=36.10  Aligned_cols=28  Identities=29%  Similarity=0.427  Sum_probs=18.7

Q ss_pred             hhhc-CCceEEEEEeCCCCchHHHHHHHHH
Q 023886           21 NILE-QDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        21 ~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .++. .+..+|+++ |..|+||||+...+.
T Consensus        11 ~~~~~~~~~~i~v~-G~~~~GKssli~~l~   39 (183)
T 1moz_A           11 KLWGSNKELRILIL-GLDGAGKTTILYRLQ   39 (183)
T ss_dssp             GGTTCSSCEEEEEE-EETTSSHHHHHHHTC
T ss_pred             HhcCCCCccEEEEE-CCCCCCHHHHHHHHh
Confidence            3444 444555555 789999999986553

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=84.66  E-value=0.78  Score=43.31  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=28.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC----CcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G----~kVlliD~D   65 (276)
                      +++.|-+|+|||++...-+..+.+.+    .++|++-.-
T Consensus        25 ~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft   63 (647)
T 3lfu_A           25 LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT   63 (647)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence            45667799999999999888887653    689998765

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=84.55  E-value=0.84  Score=40.49  Aligned_cols=29  Identities=34%  Similarity=0.503  Sum_probs=21.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      .+.+++-|-=|+||||.+..|+..|...|
T Consensus        49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~g   77 (376)
T 1of1_A           49 LLRVYIDGPHGMGKTTTTQLLVALGSRDD   77 (376)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            34467778889999999999999998877

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=84.44  E-value=0.59  Score=36.62  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=16.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +..+|+ +-|.+||||||+...+.
T Consensus        22 ~~~ki~-~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           22 KHGKLL-FLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             --CEEE-EEESTTSSHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHh
Confidence            334554 55799999999988776

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.36  E-value=0.65  Score=42.36  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++=++..|.+|+|||++|.++|..+   |...+.+++.
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s  277 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGS  277 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence            445557778999999999999888654   5667766654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=84.35  E-value=0.57  Score=36.34  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             hhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886           22 ILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ++..+..+|+++ |..|+||||+...|.
T Consensus        11 ~~~~~~~~i~v~-G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           11 LFNHQEHKVIIV-GLDNAGKTTILYQFS   37 (187)
T ss_dssp             HHTTSCEEEEEE-ESTTSSHHHHHHHHH
T ss_pred             hcCCCccEEEEE-CCCCCCHHHHHHHHh
Confidence            444555565555 789999999988776

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=84.14  E-value=0.48  Score=36.81  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=15.9

Q ss_pred             EEEeCCCCchHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +++-|.+|+||||+...|..
T Consensus        24 i~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHc
Confidence            34557899999999988864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=84.07  E-value=0.73  Score=40.18  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ..+++-|-=|+||||.+..|+..|...|
T Consensus         5 ~fI~~EG~dGsGKTT~~~~La~~L~~~g   32 (331)
T 1e2k_A            5 LRVYIDGPHGMGKTTTTQLLVALGSRDD   32 (331)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            4467788889999999999999998877

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=83.80  E-value=0.59  Score=34.90  Aligned_cols=20  Identities=45%  Similarity=0.599  Sum_probs=15.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +|++ -|.+|+||||+...+.
T Consensus         5 ~i~v-~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            5 KLVV-VGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEE-EESTTSSHHHHHHHHH
T ss_pred             EEEE-ECCCCCCHHHHHHHHH
Confidence            4444 4679999999987775

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=83.77  E-value=1.1  Score=36.98  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +++++|+.+-||.|+     .+|..|++.|.+|.++|-++.
T Consensus        22 ~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           22 SKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence            356778888999887     677888999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=83.73  E-value=0.83  Score=34.08  Aligned_cols=19  Identities=32%  Similarity=0.417  Sum_probs=15.2

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +++-|.+|+||||+...+.
T Consensus         4 i~v~G~~~~GKSsli~~l~   22 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLL   22 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            3445789999999988876

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=83.56  E-value=0.95  Score=37.61  Aligned_cols=43  Identities=16%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.|.+-.+++++|+.+-||.|+     .+|..|++.|.+|.++|-+..
T Consensus        21 ~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           21 QSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             HHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred             hhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence            3344445567778888999996     567788899999999998754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=83.55  E-value=0.39  Score=41.48  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=20.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      +++.|.+|+|||++|..+|..+.
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            67789999999999999998664

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=83.48  E-value=0.99  Score=37.86  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             EEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEe
Q 023886           32 FVGGKGGVGKTTCSSILSILLAEVRP-SVLIIS   63 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD   63 (276)
                      ++.+.-|.|||.++..++..+...|. +|+++-
T Consensus       132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~  164 (282)
T 1rif_A          132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIV  164 (282)
T ss_dssp             EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence            45789999999999988887766554 888873

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=83.44  E-value=0.95  Score=34.36  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=16.1

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +++-|.+||||||+...|.
T Consensus         6 v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            6 IALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            5666899999999998875

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=83.39  E-value=0.38  Score=42.13  Aligned_cols=38  Identities=21%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             eEEEEEeCCCCchHHHHH-HHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCS-SILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a-~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ...+++.|-=|+||||++ ..|+..+...|.  .++.-.|.
T Consensus        12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~--vv~trEPg   50 (341)
T 1osn_A           12 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNR--ILLIGEPL   50 (341)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSGGG--EEEECCCH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Confidence            456789999999999999 999988887773  45566663

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=83.37  E-value=0.73  Score=36.52  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=16.3

Q ss_pred             cccchhhhhcCC-ceEEEEEeCCCCchHHHHHHHHH
Q 023886           15 PEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        15 ~~~~l~~~~~~~-~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +..+|.++.... ..+| ++-|..||||||+...+.
T Consensus        17 ~~~~m~~~~~~~~~~ki-~vvG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           17 RGSHMENLYFQGQAIKC-VVVGDGAVGKTCLLISYT   51 (204)
T ss_dssp             -------------CEEE-EEEESTTSSHHHHHHHHH
T ss_pred             chhHHHhHhhcCCeEEE-EEECcCCCCHHHHHHHHH
Confidence            334454444333 3444 555899999999987665

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=83.31  E-value=0.59  Score=36.22  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=16.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+|++ -|..|+||||+...|.
T Consensus        24 ~~i~v-~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           24 GEVAF-VGRSNVGKSSLLNALF   44 (195)
T ss_dssp             CEEEE-EEBTTSSHHHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHH
Confidence            45554 4899999999987763

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=83.27  E-value=0.97  Score=40.55  Aligned_cols=28  Identities=29%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             CCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           37 GGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        37 GGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      |=-||||++.-++..|.+.|++|.++-.
T Consensus        56 GTnGKtTT~~~l~~iL~~~G~~~g~~~s   83 (422)
T 1w78_A           56 GTNGKGTTCRTLESILMAAGYKVGVYSS   83 (422)
T ss_dssp             CSSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCcChHHHHHHHHHHHHHCCCCEEEECC
Confidence            4468999999999999999999987643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=83.03  E-value=0.94  Score=41.66  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=27.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+|||++|..+|..+   |..++.+++.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~  272 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP  272 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch
Confidence            3446777999999999999887654   6777777753

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=83.00  E-value=0.8  Score=38.11  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=29.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .+++++|+.+-||.|+     .+|..|++.|.+|.++|-+..
T Consensus        26 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           26 SSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             -CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence            4456778888899887     577888899999999998864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=82.79  E-value=4.9  Score=37.88  Aligned_cols=21  Identities=19%  Similarity=0.074  Sum_probs=15.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSIL   51 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~   51 (276)
                      +.+-|..|+||||++-.|...
T Consensus         9 I~IiGh~d~GKTTLi~rLl~~   29 (600)
T 2ywe_A            9 FCIIAHVDHGKSTLADRLLEY   29 (600)
T ss_dssp             EEEECC--CCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            455689999999999988653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=82.75  E-value=1  Score=33.98  Aligned_cols=21  Identities=33%  Similarity=0.433  Sum_probs=16.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+| ++-|.+|+||||+...+.
T Consensus         8 ~~i-~v~G~~~~GKssl~~~l~   28 (171)
T 1upt_A            8 MRI-LILGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             EEE-EEECSTTSSHHHHHHHHH
T ss_pred             cEE-EEECCCCCCHHHHHHHHh
Confidence            344 455799999999988774

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.68  E-value=0.93  Score=40.98  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=26.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++=+...|.+|+|||++|.++|..+   |...+.++..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s  250 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS  250 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence            34556777999999999998888754   5566666654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=82.62  E-value=1  Score=36.56  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=22.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +-..|--|+||||++..|+.    .|.  -+||+|
T Consensus        12 iglTGgigsGKStv~~~l~~----~g~--~vidaD   40 (210)
T 4i1u_A           12 IGLTGGIGSGKTTVADLFAA----RGA--SLVDTD   40 (210)
T ss_dssp             EEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHH----CCC--cEEECc
Confidence            45668889999999987764    565  457998

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=82.51  E-value=1  Score=36.91  Aligned_cols=30  Identities=23%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .++.+..|.|||.++..++..+   +.+++++-
T Consensus       111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~  140 (237)
T 2fz4_A          111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV  140 (237)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence            4555688999999988776554   67777774

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=82.50  E-value=1  Score=38.71  Aligned_cols=31  Identities=23%  Similarity=0.139  Sum_probs=24.3

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSV   59 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV   59 (276)
                      ++..++.+-|..|+||||+...|+..+  .| +|
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G-~I  154 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GG-SV  154 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc--Cc-eE
Confidence            344566667999999999999999888  55 45

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=82.22  E-value=1.5  Score=39.31  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~~   67 (276)
                      .++.++.++ |..|+||||++..+|..+++.+..  +.++=.|..
T Consensus       172 ~rGQr~~Iv-G~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER  215 (422)
T 3ice_A          172 GRGQRGLIV-APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER  215 (422)
T ss_dssp             BTTCEEEEE-CCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred             cCCcEEEEe-cCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence            344566666 567999999999999998875433  334444433

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=82.11  E-value=0.87  Score=34.19  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=16.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+|+ +-|.+|+||||+...|.
T Consensus         6 ~~i~-v~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A            6 IKMV-VVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             EEEE-EECSTTSSHHHHHHHHH
T ss_pred             EEEE-EECcCCCCHHHHHHHHH
Confidence            3444 44789999999998876

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=81.97  E-value=1.3  Score=36.88  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++|+.+-+|.|+     .+|..|++.|.+|.++|.|.
T Consensus         3 K~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~   36 (247)
T 3ged_A            3 RGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE   36 (247)
T ss_dssp             CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            56678888999998     46788999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=81.93  E-value=1.2  Score=33.73  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=21.4

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      .+.++.|..|+||||+--++...|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHc
Confidence            4678889999999999998888774

>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}

Probab=81.84  E-value=1.6  Score=34.64  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=34.4

Q ss_pred             CceEEEEEeCCCCchHHHH-HHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTC-SSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~-a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ....+.++|+-||++|++. .+.|+....+.|++|.++--|..
T Consensus        49 s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~   91 (189)
T 2l8b_A           49 DRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRR   91 (189)
T ss_dssp             HSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTH
T ss_pred             cCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchH
Confidence            3467889999999999988 66677777789999999988743

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=81.72  E-value=0.85  Score=39.38  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      +-+++.|..|+||||+|..|    .++|++
T Consensus       148 ~gvli~G~sG~GKStlal~l----~~~G~~  173 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDL----INKNHL  173 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred             EEEEEEcCCCCCHHHHHHHH----HHcCCE
Confidence            33567899999999998664    457875

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=81.55  E-value=0.83  Score=36.48  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=17.2

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ....+|++ -|..|+||||+.-.|.
T Consensus        27 ~~~~~i~v-~G~~~~GKSslin~l~   50 (223)
T 4dhe_A           27 TVQPEIAF-AGRSNAGKSTAINVLC   50 (223)
T ss_dssp             CCSCEEEE-EESCHHHHHHHHHHHT
T ss_pred             CCCCEEEE-EcCCCCCHHHHHHHHh
Confidence            33455555 4899999999987663

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=81.20  E-value=1.5  Score=36.65  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      -.+++++|+.+-+|.|+     .+|..|++.|.+|.+++.+..
T Consensus        29 l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~   66 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGA-----AIAKRLALEGAAVALTYVNAA   66 (271)
T ss_dssp             CTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCCH
Confidence            34567778888999887     578889999999999987653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=81.19  E-value=1.1  Score=36.93  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=28.7

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+++++++.+-+|.|+     .+|..|++.|.+|.++|-+.
T Consensus         8 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A            8 EGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            3456778887888886     57788899999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=81.07  E-value=1.7  Score=39.74  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=24.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.|.+|+||||++..+|..+   |..+.-+++
T Consensus        52 vLL~GppGtGKT~Laraia~~~---~~~f~~is~   82 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEA---NVPFFHISG   82 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH
Confidence            6778999999999999998754   555655554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=80.92  E-value=1.3  Score=34.08  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=16.1

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +++-|.+||||||+...|.
T Consensus        10 i~lvG~~gvGKStL~~~l~   28 (188)
T 2wjg_A           10 IALIGNPNVGKSTIFNALT   28 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4666899999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=80.87  E-value=0.93  Score=38.79  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=22.8

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      +..+++.....+..+.|..|+||||+.-.|+
T Consensus       156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            3344433344677788999999999999988

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=80.83  E-value=0.82  Score=35.45  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=16.1

Q ss_pred             EEEeCCCCchHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +++-|.+||||||+...++.
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            45558999999999887763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=80.80  E-value=0.98  Score=37.20  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.+ .|.+|+||||.|..||..+
T Consensus         9 ~~~~~-~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLIL-LGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEE-ECCTTSCHHHHHHHHHHHH
T ss_pred             cceee-ECCCCCCHHHHHHHHHHHh
Confidence            34444 4899999999999998766

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=80.77  E-value=1.5  Score=37.02  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=25.0

Q ss_pred             hhhhhcCC-c-eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           19 VRNILEQD-S-LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        19 l~~~~~~~-~-~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +...+.+. + ..-+++.|.+|+|||++|..+|..+
T Consensus        93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            44444443 3 4457888999999999999999853

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=80.74  E-value=1  Score=39.25  Aligned_cols=37  Identities=19%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      +.+++-|-=|+||||.+..|+..|...+ +|+ +--.|.
T Consensus         8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~-~trEPg   44 (334)
T 1p6x_A            8 VRIYLDGVYGIGKSTTGRVMASAASGGS-PTL-YFPEPM   44 (334)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSS-CEE-EECCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccCC-cEE-EEeCCC
Confidence            4567888999999999999999987644 444 444443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=80.70  E-value=1.1  Score=35.24  Aligned_cols=23  Identities=30%  Similarity=0.161  Sum_probs=17.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~   50 (276)
                      ..+|++ -|.+||||||+.-.|..
T Consensus        24 ~~ki~v-vG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           24 YRKVVI-LGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEE-EESTTSSHHHHHHHHHH
T ss_pred             cEEEEE-ECCCCcCHHHHHHHHHh
Confidence            345544 57999999999877763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=80.66  E-value=1.3  Score=33.81  Aligned_cols=21  Identities=38%  Similarity=0.423  Sum_probs=15.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+|++ -|.+|+||||+...+.
T Consensus         9 ~ki~v-~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D            9 IKCVT-VGDGAVGKTCLLISYT   29 (182)
T ss_dssp             CEEEE-ECSTTSSHHHHHHHHH
T ss_pred             EEEEE-ECCCCCCHHHHHHHHh
Confidence            45554 4899999999986665

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=80.54  E-value=1.7  Score=35.37  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++++++.+-||.|+     .+|..|++.|.+|.++|-++
T Consensus        11 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A           11 GACAAVTGAGSGIGL-----EICRAFAASGARLILIDREA   45 (254)
T ss_dssp             TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            457778888999887     56778888999999998764

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=80.48  E-value=1.3  Score=39.95  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=25.0

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      -|=-||||++.-++..|.+.|+||.++-.
T Consensus        58 tGTNGKgSt~~~l~~iL~~~G~~vg~~tS   86 (437)
T 3nrs_A           58 AGTNGKGTTCCTLEAILLAAGLRVGVYSS   86 (437)
T ss_dssp             ECSSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ECCcChHHHHHHHHHHHHHCCCcEEEECC
Confidence            34568999999999999999999988654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=80.42  E-value=0.91  Score=43.23  Aligned_cols=41  Identities=22%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             CCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886          223 DLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL  264 (276)
Q Consensus       223 ~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~  264 (276)
                      ..+++++|.-...-.-.+++..++.+.+++++. -+++|++-
T Consensus        90 ~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmD  130 (638)
T 3j25_A           90 VLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKID  130 (638)
T ss_dssp             TCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECC
T ss_pred             HhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccc
Confidence            347788777776666678899999999999997 57899984

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=80.28  E-value=1.1  Score=37.45  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..++++|+.+-||.|+     .+|..|++.|.+|.++|-+..
T Consensus        27 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence            4466778888899887     577888999999999987653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=80.24  E-value=1.6  Score=36.40  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +-.+++++|+.+-+|.|+     .+|..|++.|.+|.++|-+.
T Consensus        27 ~l~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           27 QFEGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             GGTTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence            334567778888999887     46778889999999998774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=80.19  E-value=1.3  Score=34.63  Aligned_cols=24  Identities=33%  Similarity=0.458  Sum_probs=16.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ....+|+++ |..|+||||+...|.
T Consensus        26 ~~~~ki~v~-G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           26 QKAYKIVLA-GDAAVGKSSFLMRLC   49 (199)
T ss_dssp             --CEEEEEE-SSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEE-CcCCCCHHHHHHHHH
Confidence            333455554 899999999988775

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=80.07  E-value=1.7  Score=36.35  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ++-.+++++|+.+-+|.|+     .+|..|++.|.+|.++|-++..
T Consensus        29 ~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~~   69 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGA-----AIAEGLAGAGAHVILHGVKPGS   69 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCHHH
Confidence            3344567778888899887     4677888999999999987654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=80.05  E-value=1.3  Score=36.82  Aligned_cols=40  Identities=18%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++-.+++++|+.+-+|.|+     .+|..|++.|.+|.++|-++
T Consensus        15 ~~~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~   54 (266)
T 4egf_A           15 VLRLDGKRALITGATKGIGA-----DIARAFAAAGARLVLSGRDV   54 (266)
T ss_dssp             GGCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            33444567778888899887     46778889999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	1e-39
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	6e-33
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	3e-08
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	4e-08
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	2e-06
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	4e-06
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.002

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (346), Expect = 1e-39
 Identities = 71/262 (27%), Positives = 103/262 (39%), Gaps = 34/262 (12%)

Query: 25  QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTL 84
           Q+   ++F  GKGGVGKT+ S   +I LAE    VL++STDPA N+   F Q    T   
Sbjct: 5   QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQA 64

Query: 85  VNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANA-IPGIDEAMSFAEM---------- 133
           +     L A+E+DP    +      +D +   L +  +  I+E +S A            
Sbjct: 65  IASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFT 124

Query: 134 ---LKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
                      +  I+FDTAPTGHT+RLLQ P      +D      +  G M        
Sbjct: 125 GLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGL----- 179

Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
                          E  ++      +   DP  T  V V   +  +L E  R   EL  
Sbjct: 180 ---------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAA 224

Query: 251 FEIDTHNIIINQVLYDDEGMHC 272
             +    ++IN VL   E  + 
Sbjct: 225 IGLKNQYLVINGVLPKTEAAND 246

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (299), Expect = 6e-33
 Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 34/267 (12%)

Query: 10  QELEIPE-GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
           Q  +IP   ++ + + ++    + + GKGGVGKTT ++ +++ LA++   V + ++DPA 
Sbjct: 1   QRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 60

Query: 69  NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
           +LS                            +E +    +       E     P  +E  
Sbjct: 61  HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIA 120

Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
            F    ++++      +V DTAPTGHTL LL       + + K M               
Sbjct: 121 VFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKM--------------- 165

Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
                             G K          +DP+ T  + V +PE   + E   L  +L
Sbjct: 166 ------------------GEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADL 207

Query: 249 TKFEIDTHNIIINQVLYDDEGMHCNCR 275
            +  I     IIN  L   +      R
Sbjct: 208 ERAGIHPWGWIINNSLSIADTRSPLLR 234

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 33  VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92
           + GKGG+GK+T +  L+  L  +  +++++  DP  + +        +   L        
Sbjct: 6   IYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGE 65

Query: 93  AMEVDPSVEEETGSTEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTA 150
            +E+D  ++E  G    ++S   E  +  A  GI  +++  E L          + +D  
Sbjct: 66  DVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDD-LDYVFYDVL 124

Query: 151 PTGHTLRLL 159
                    
Sbjct: 125 GDVVCGGFA 133

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 27  SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
           +++   + GKGG+GK+T +  L   LAE+   V+I+  DP  + +        +   +  
Sbjct: 1   AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEM 60

Query: 87  GFSNLYAMEVDPSVEEETG----STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDY 142
                   +++     + G               +  A  G+  A++F E     +  D 
Sbjct: 61  AAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYED-DL 119

Query: 143 SCIVFDTAP 151
             + +D   
Sbjct: 120 DFVFYDVLG 128

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
              GKGG GKTT ++ L + LA++   V I+  D 
Sbjct: 5  TVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 40

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
            V GKGG GKTT ++ LS+ L +    VL +  D 
Sbjct: 6  SIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 22/195 (11%)

Query: 29  KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
           + VF+ G  GVGKTT     S +L      V    T+          +R       ++G 
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ----GGRRIGFDVVTLSGT 57

Query: 89  SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
               +         +     G   +     +       A+                 V D
Sbjct: 58  RGPLSRVGLEPPPGKRECRVGQYVV-----DLTSFEQLALPVLRNADCSSGPGQRVCVID 112

Query: 149 TAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGM 208
                           +E      +    +       +        +    AL+  +   
Sbjct: 113 EI------------GKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNR 160

Query: 209 KDV-IERVNKQFKDP 222
           KDV +  V K+ ++ 
Sbjct: 161 KDVKVFNVTKENRNH 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	100.0
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.95
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	99.91
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	99.91
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	99.9
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	99.89
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.17
d1okkd2	207	GTPase domain of the signal recognition particle r	99.11
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.1
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.04
d1vmaa2	213	GTPase domain of the signal recognition particle r	99.03
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.88
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.88
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.78
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.78
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.75
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.65
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.59
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.47
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.36
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.25
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.21
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.18
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.17
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.09
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.09
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.02
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.02
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.0
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.69
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.67
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.51
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.47
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	96.38
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	96.35
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.35
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.33
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.27
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.23
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.22
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.21
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.17
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.16
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.16
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.15
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	96.15
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.05
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.0
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.98
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	95.98
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.93
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.88
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.57
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.55
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.5
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.5
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.5
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.48
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.47
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	95.29
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.11
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.97
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.75
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.75
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.73
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.64
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.58
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.54
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.45
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.45
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.26
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.23
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.97
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.82
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.78
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.7
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.63
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.61
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.57
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.49
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.42
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.24
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.14
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.02
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.0
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.95
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.63
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	92.41
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.41
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.31
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	92.18
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.14
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.02
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.8
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.72
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.72
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.47
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.46
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.29
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.19
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.16
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.03
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	91.02
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.01
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	90.91
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	90.89
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	90.77
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.31
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.14
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.12
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	90.05
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.96
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.89
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.78
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	89.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.65
d1tf5a3	273	Translocation ATPase SecA, nucleotide-binding doma	89.65
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.42
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.41
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.1
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	88.99
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.59
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	88.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.28
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	87.45
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	87.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	86.96
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	86.94
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	86.74
d1nkta3	288	Translocation ATPase SecA, nucleotide-binding doma	86.73
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	84.99
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.68
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	84.5
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.45
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	84.17
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	84.16
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	83.8
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.55
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	83.15
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	82.79
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	82.45
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	82.27
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.18
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	81.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	81.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	81.22
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	81.02
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.79
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.38
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	80.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.21

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-35  Score=255.49  Aligned_cols=228  Identities=31%  Similarity=0.429  Sum_probs=157.0

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-c
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E  103 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~  103 (276)
                      +.+++++|+||||||||||+|+|||.+||++|+|||+||+|||+|++..||.+....+......+++...++++.... +
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQ   84 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHhCCCCcccccccccccccchhccChhhHHHH
Confidence            445788899999999999999999999999999999999999999999999887666655555677777777665443 1


Q ss_pred             c----cCc--cCcc-hHHHHHhc--cCCCchHHHHHHHHHHHhc----cCCCcEEEEcCCCchhHHHhhhhHHHHHHHHH
Q 023886          104 T----GST--EGMD-SLFSELAN--AIPGIDEAMSFAEMLKLVQ----TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD  170 (276)
Q Consensus       104 ~----~~~--~~~~-~~~~~~~~--~~~~~~~~~~l~~~l~~l~----~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~  170 (276)
                      +    ...  .... ........  ..........+.+++..+.    ..+|||||+||||+.+.++++.+|.....++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~iviD~pp~~~~l~~~~l~~~~~~~~~  164 (296)
T d1ihua1          85 YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFID  164 (296)
T ss_dssp             HHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC-
T ss_pred             HHhhccchhhhcccccchhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhcccceEEEeccCCCchHHHHHhHHHHHHHHHh
Confidence            1    000  0000 00111111  1111112223333333322    12699999999999999999999877654443


Q ss_pred             HHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh
Q 023886          171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK  250 (276)
Q Consensus       171 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~  250 (276)
                      ...+....       .....|             .....+.+.++.+.+.++..+++++|++|+..++.++.++++.+++
T Consensus       165 ~~~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~t~~~lVt~pe~~~~~~~~r~~~~l~~  224 (296)
T d1ihua1         165 SNPEGASC-------LGPMAG-------------LEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAA  224 (296)
T ss_dssp             -----CCC-------CGGGGG-------------CCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             hccchhhh-------cccccc-------------hhHHHHHHHHHHhhccCcccceeeEecCcchhHHHHHHHHHHHHHh
Confidence            33221111       111111             1123455667777888999999999999999999999999999999


Q ss_pred             CCCCcCeEEEccccCCCCCCCC
Q 023886          251 FEIDTHNIIINQVLYDDEGMHC  272 (276)
Q Consensus       251 ~~~~~~g~vvN~~~~~~~~~~~  272 (276)
                      .|+++.++|+||+.|..+...|
T Consensus       225 ~gi~~~~vVvN~v~p~~~~~~~  246 (296)
T d1ihua1         225 IGLKNQYLVINGVLPKTEAAND  246 (296)
T ss_dssp             HTCCCEEEEEEEECCGGGGSSC
T ss_pred             cCCCceEEEEcCCcCccCCCCC
Confidence            9999999999999987766555

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.1e-29  Score=213.43  Aligned_cols=208  Identities=26%  Similarity=0.377  Sum_probs=122.5

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDP   98 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~   98 (276)
                      |..-+.....+|+++||||||||||+|+|||.+||++|+||++||+|||++++.+||........          ...+.
T Consensus        11 ~~~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~~l~~~lg~~~~~~~~----------~~~~~   80 (279)
T d1ihua2          11 LVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNNLQV----------SRIDP   80 (279)
T ss_dssp             HHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-----------CCEEE----------EECCH
T ss_pred             HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCChHHHhCCccccccc----------ccccc
Confidence            34444577799999999999999999999999999999999999999999999999876432111          11111


Q ss_pred             cccc-----cc--cCccCcchHHH---HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHH
Q 023886           99 SVEE-----ET--GSTEGMDSLFS---ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKG  168 (276)
Q Consensus        99 ~~~~-----~~--~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~  168 (276)
                      ....     .+  .....+.....   ......++........++...+...+|||+++|+||+.+.++++.++......
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~l~~~~~~~~~  160 (279)
T d1ihua2          81 HEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHRE  160 (279)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------
T ss_pred             chhhHHHHHhhhhcccccccccccccchhhhcccchHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHhh
Confidence            1110     00  00111111111   11111222233333444444455457999999999998888877665543322


Q ss_pred             HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886          169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL  248 (276)
Q Consensus       169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l  248 (276)
                      +......                                 ..........+.+...+.+++|+.|+..+++++.++.+.+
T Consensus       161 ~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~vlV~~p~~~~~~~~~r~~~~l  207 (279)
T d1ihua2         161 IAKKMGE---------------------------------KGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADL  207 (279)
T ss_dssp             ---------------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHhcc---------------------------------hhhHHHHhhhccccccccceEeccccHhHHHHHHHHHHHH
Confidence            2211100                                 0001111122345567889999999999999999999999


Q ss_pred             hhCCCCcCeEEEccccCCCCC
Q 023886          249 TKFEIDTHNIIINQVLYDDEG  269 (276)
Q Consensus       249 ~~~~~~~~g~vvN~~~~~~~~  269 (276)
                      +++++++.++|+|++.+..+.
T Consensus       208 ~~~~~~~~~iV~N~~~~~~~~  228 (279)
T d1ihua2         208 ERAGIHPWGWIINNSLSIADT  228 (279)
T ss_dssp             HHTTCCCCEEEEEEESTTSCC
T ss_pred             HhcCCCccEEEEcCCcccccc
Confidence            999999999999999776644

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=3e-25  Score=185.16  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=112.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcc--eeccCCCceeeecCCcccccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT--LVNGFSNLYAMEVDPSVEEET  104 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~  104 (276)
                      +.|+|+|+||||||||+|+|||.+||+.|+||++||+|++ ++++.++|.+......  ...+...+...........++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV   81 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHhCCCcCcchhhhhhccccccccccccCCcccee
Confidence            4567999999999999999999999999999999999986 4688888765321110  000000000000000000011


Q ss_pred             -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886          105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI  183 (276)
Q Consensus       105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~  183 (276)
                       +........    ..     .....+.++++.+++ +|||||+|+||+.+......+                      
T Consensus        82 l~~~~~~~~~----~~-----~~~~~l~~~l~~l~~-~~D~viiD~~~~~~~~~~~~l----------------------  129 (232)
T d1hyqa_          82 VPAGVSLEGL----RK-----ANPEKLEDVLTQIME-STDILLLDAPAGLERSAVIAI----------------------  129 (232)
T ss_dssp             EECCSCHHHH----HH-----HCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHH----------------------
T ss_pred             Eeeecccccc----cc-----cchhhHHHHHHHHhh-ccceeeecccccccchhHHHh----------------------
Confidence             111111111    00     112367888888887 999999999998654432221                      


Q ss_pred             hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                                                          .  ..+.+++|+.|+..++..+.+....+++.+.++.++|+|++
T Consensus       130 ------------------------------------~--~ad~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~N~~  171 (232)
T d1hyqa_         130 ------------------------------------A--AAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRI  171 (232)
T ss_dssp             ------------------------------------H--HSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ------------------------------------h--hhheeeeeccccccchhhhhhhhhhhhhccccccccccccc
Confidence                                                0  13678999999999999999999999999999999999998


Q ss_pred             cC
Q 023886          264 LY  265 (276)
Q Consensus       264 ~~  265 (276)
                      ..
T Consensus       172 ~~  173 (232)
T d1hyqa_         172 TT  173 (232)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=3.6e-25  Score=185.03  Aligned_cols=168  Identities=20%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCC---Cceeeec-CCcccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFS---NLYAMEV-DPSVEE  102 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~---~l~~~~~-~~~~~~  102 (276)
                      +.|+|+|+||||||||+|+|||.+|++.|+||++||+|+ +++++..+|....... ..+.+.   .+..... ......
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~   81 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVT-LHDVLAGEANVEDAIYMTQFDNV   81 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSC-HHHHHTTSSCGGGGCEECSSTTE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcccc-hhhhccCCCcHHHhhhccccccc
Confidence            456799999999999999999999999999999999996 6788888875432111 100000   0000000 000000


Q ss_pred             cc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886          103 ET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG  181 (276)
Q Consensus       103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~  181 (276)
                      .. +......  ....  .     ....+.++++.+++ .||||||||||+++.....++                    
T Consensus        82 ~~~~~~~~~~--~~~~--~-----~~~~~~~~~~~l~~-~~d~IiiD~~~~~~~~~~~~l--------------------  131 (237)
T d1g3qa_          82 YVLPGAVDWE--HVLK--A-----DPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMSAM--------------------  131 (237)
T ss_dssp             EEECCCCSHH--HHHH--C-----CGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHHHH--------------------
T ss_pred             cccccccchh--hhhh--h-----hhHHHHHHHHHHHh-cCCEEEEcccccccccchhhh--------------------
Confidence            00 1111111  0000  0     11246778888887 899999999998654433222                    


Q ss_pred             hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886          182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN  261 (276)
Q Consensus       182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN  261 (276)
                                                             . ..+.+++|+.|+..++..+.+..+.+++.++++.|+|+|
T Consensus       132 ---------------------------------------~-~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N  171 (237)
T d1g3qa_         132 ---------------------------------------L-SGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLN  171 (237)
T ss_dssp             ---------------------------------------T-TCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ---------------------------------------h-hhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhc
Confidence                                                   1 247799999999999999999999999999999999999


Q ss_pred             cccCC
Q 023886          262 QVLYD  266 (276)
Q Consensus       262 ~~~~~  266 (276)
                      |+...
T Consensus       172 ~~~~~  176 (237)
T d1g3qa_         172 RYGRS  176 (237)
T ss_dssp             EETSC
T ss_pred             ccccc
Confidence            98543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.90  E-value=7.5e-25  Score=189.29  Aligned_cols=46  Identities=33%  Similarity=0.509  Sum_probs=41.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l   74 (276)
                      ++|++ ||||||||||+|+|||.+||++|+|||+||+|||++.+.++
T Consensus         3 r~Iai-sgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~st~~~   48 (289)
T d2afhe1           3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLI   48 (289)
T ss_dssp             EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHH
T ss_pred             cEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCcchhh
Confidence            44555 88999999999999999999999999999999999877654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.89  E-value=8.1e-24  Score=180.77  Aligned_cols=174  Identities=16%  Similarity=0.177  Sum_probs=101.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh-ccccCCCcceeccC----CCceeeecCCc--c
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGF----SNLYAMEVDPS--V  100 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l-~~~~~~~~~~~~~~----~~l~~~~~~~~--~  100 (276)
                      ++|+| +|||||||||+|+|||.+||++|+|||+||+|||++++..+ +.....  +..+..    .+.....+-..  .
T Consensus         2 r~Iai-~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~~t~~ll~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~   78 (269)
T d1cp2a_           2 RQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQK--SVLDTLREEGEDVELDSILKEGYG   78 (269)
T ss_dssp             EEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCC--CHHHHHHHHGGGCCHHHHCEECGG
T ss_pred             CEEEE-ECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCchhhhhCCCccc--chhhhhhhcccccccceEEEecCC
Confidence            45666 47999999999999999999999999999999998876654 433221  111100    00000000000  0


Q ss_pred             cccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023886          101 EEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKF  179 (276)
Q Consensus       101 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~  179 (276)
                      ..+. +............    .+......+.+.+..+.+ .||||++||||+.+.......                  
T Consensus        79 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~l~~-~~D~viiD~p~~~~~~~~~~~------------------  135 (269)
T d1cp2a_          79 GIRCVESGGPEPGVGCAG----RGIITSINMLEQLGAYTD-DLDYVFYDVLGDVVCGGFAMP------------------  135 (269)
T ss_dssp             GCEEEECCCCCTTSSCHH----HHHHHHHHHHHHTTCCCT-TCSEEEEEEECSSCSTTTTHH------------------
T ss_pred             ceEEeccCcchhhhhhcc----cchHHHHHHHHHHHHhhc-cCCEEEeccCCccchhHHHHH------------------
Confidence            0011 1110100000000    001122234555566665 899999999997543322111                  


Q ss_pred             hhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh----CCCCc
Q 023886          180 GGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK----FEIDT  255 (276)
Q Consensus       180 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~----~~~~~  255 (276)
                                                             ......+.++.|+.|+..++..+.++.+.++.    .++++
T Consensus       136 ---------------------------------------~~~~~ad~vliv~~~~~~sl~~~~~~~~~i~~~~~~~~~~~  176 (269)
T d1cp2a_         136 ---------------------------------------IREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRL  176 (269)
T ss_dssp             ---------------------------------------HHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEE
T ss_pred             ---------------------------------------HHhhccCceeeccchhhhHHHHHHHHHHHHHhhccccceec
Confidence                                                   00112356888999999999988888777764    56777


Q ss_pred             CeEEEccccCC
Q 023886          256 HNIIINQVLYD  266 (276)
Q Consensus       256 ~g~vvN~~~~~  266 (276)
                      .++|+|+....
T Consensus       177 ~~vv~N~~~~~  187 (269)
T d1cp2a_         177 GGIICNSRKVA  187 (269)
T ss_dssp             EEEEEECCSSS
T ss_pred             cceEEeeecCC
Confidence            89999987543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.8e-18  Score=141.98  Aligned_cols=177  Identities=15%  Similarity=0.044  Sum_probs=105.4

Q ss_pred             EEEEEeCCC-CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886           29 KWVFVGGKG-GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST  107 (276)
Q Consensus        29 ~i~v~s~kG-GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (276)
                      |.+|++|+| ||||||+|+|||.+|+++|+||++||.|+|++....++........... ...+   .............
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~   77 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQR-NSSL---QLDYATVNPYTFA   77 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHH-TCSS---CCCHHHHCSEEES
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccccCCCCCCCCcchhHHHHHHH-hhcc---Ccccccccccccc
Confidence            457888998 9999999999999999999999999999998876665543221000000 0000   0000000000000


Q ss_pred             cCc-chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhh
Q 023886          108 EGM-DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM  186 (276)
Q Consensus       108 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~  186 (276)
                      ... ...........   .....+.+.+..... .||++++|+++..........-.                       
T Consensus        78 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~-----------------------  130 (224)
T d1byia_          78 EPTSPHIISAQEGRP---IESLVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFTF-----------------------  130 (224)
T ss_dssp             SCSCHHHHHHHHTCC---CCHHHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEEH-----------------------
T ss_pred             cchhhhhhhhhhhhh---hhHHHHHHHHhhhhh-ccceEeecccccccccccccchh-----------------------
Confidence            001 11111111111   122345566666665 89999999998743222111100                       


Q ss_pred             hhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                                                ..+.....    ..+++|+.+.......+....+.+++.+..+.|+|+|++.++
T Consensus       131 --------------------------~~~~~~~~----~~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~N~~~~~  180 (224)
T d1byia_         131 --------------------------ADWVTQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP  180 (224)
T ss_dssp             --------------------------HHHHHHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred             --------------------------hccccccc----ceeeEEEeeccchhHHHHHHHHHHhccCCccEEEEEeCcCCC
Confidence                                      00111111    337788889999999999999999999999999999998544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=4.7e-10  Score=90.69  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+.+.|+++.|-.||||||+++-||..+.++|+||++|.+|....
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            445678888899999999999999999999999999999998643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.11  E-value=1.1e-09  Score=88.29  Aligned_cols=42  Identities=29%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+++.+.|..||||||+++-||..+.++|+||.+|.+|....
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   47 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA   47 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccc
Confidence            456666699999999999999999999999999999998543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.10  E-value=8.2e-10  Score=89.19  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ++|+++.|..||||||+++-||+.++++|+||++|++|....
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   51 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP   51 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            567788899999999999999999999999999999998654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.04  E-value=3.8e-09  Score=85.32  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+.+.|+++.|..||||||+++-||+.+.++|+||.+|.+|....
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   53 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP   53 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecccc
Confidence            445677777799999999999999999999999999999997643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=4.8e-09  Score=84.82  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=39.1

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      ...+.|+++.|..||||||+.+-||..+.++|+||.+|.+|...
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            34567777889999999999999999999999999999999754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.92  E-value=1.1e-05  Score=65.41  Aligned_cols=50  Identities=12%  Similarity=0.129  Sum_probs=41.8

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|++++.+  +...++++.|.+|+|||+++.++|..+++.|.+|+.++++..
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES   65 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence            35566653  345778889999999999999999999999999999999853

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=8.2e-06  Score=62.03  Aligned_cols=40  Identities=20%  Similarity=0.069  Sum_probs=35.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .|+.++|..|+||||++..|+..|.++|+||.+++.|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            3567779999999999999999999999999999999854

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=2.9e-05  Score=66.23  Aligned_cols=44  Identities=27%  Similarity=0.376  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS   71 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~   71 (276)
                      ..++-+.|-+|+||||+.-.|+.++...|+||.++..||....+
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~   97 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT   97 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeee
Confidence            44455668999999999999999999999999999999986654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.84  E-value=1e-05  Score=61.79  Aligned_cols=41  Identities=17%  Similarity=-0.060  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |+|+-+.|..|+||||+...|+..|.++|++|.+|..|...
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~   41 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG   41 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence            46777889999999999999999999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=1e-05  Score=63.89  Aligned_cols=39  Identities=18%  Similarity=0.088  Sum_probs=36.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++++.|.+|+||||+|..||..+...|.++-+++.|.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~   40 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ   40 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc
Confidence            467889999999999999999999999999999999994

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.78  E-value=2.9e-05  Score=66.12  Aligned_cols=44  Identities=30%  Similarity=0.377  Sum_probs=38.6

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL   70 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l   70 (276)
                      ...++-+.|.+|+||||+.-.|+.++...|+||.+|-.||..+.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~   93 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR   93 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHH
Confidence            34556677999999999999999999999999999999987654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.6e-06  Score=62.19  Aligned_cols=40  Identities=33%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+++.|.+|+||||++..++..+...|.+|.++.+++...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~   42 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ   42 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEET
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence            4678899999999999999999999999999999997543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.65  E-value=2.4e-05  Score=60.35  Aligned_cols=37  Identities=30%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      |+|+++.|-.|+||||++..||..|...|.++..+..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            5889999999999999999999999999999988874

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.59  E-value=9.5e-05  Score=61.10  Aligned_cols=52  Identities=17%  Similarity=0.093  Sum_probs=43.0

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .|..++. +  +..+|.-+.|.+|+||||+|..++....+.|.+|+.||..-..+
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~   98 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD   98 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCC
Confidence            4555564 3  34678889999999999999999999999999999999996544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00023  Score=58.57  Aligned_cols=52  Identities=19%  Similarity=0.098  Sum_probs=43.0

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .+..++. +  +..+|.-+.|.+|+||||++..++....+.|.+|++||..-..+
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~   95 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD   95 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccC
Confidence            4555554 2  23578889999999999999999999999999999999997554

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.47  E-value=0.00012  Score=58.82  Aligned_cols=38  Identities=26%  Similarity=0.262  Sum_probs=33.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |+++.|-.|+||||+.-+|..++. .|+++.+|..||..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~   39 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCccc
Confidence            578899999999999999987764 67899999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.38  E-value=0.00016  Score=57.49  Aligned_cols=50  Identities=16%  Similarity=0.116  Sum_probs=38.5

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~   67 (276)
                      .|+.++.+  +...+..+.|.+|+|||++|.++|...+. .+.+|+.++++..
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   66 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence            34555542  34677888899999999999999887665 5679999999854

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.36  E-value=5.9e-05  Score=57.74  Aligned_cols=37  Identities=32%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ||+++.|-.|+||||++..|+..|...|.++.++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~   38 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   38 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Confidence            6789999999999999999999999999999888654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.00055  Score=56.33  Aligned_cols=52  Identities=15%  Similarity=0.063  Sum_probs=42.4

Q ss_pred             chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      .++.++. +  +..+|.-+.|..|+||||+|..++....+.|.+|+.||..-..+
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD  101 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence            3444553 1  34688888999999999999999999999999999999997554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.21  E-value=0.00021  Score=55.19  Aligned_cols=42  Identities=29%  Similarity=0.205  Sum_probs=36.7

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ...+.|+.++|..|+||||+|..|+..+...|..+..++.|.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~   60 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccc
Confidence            344667779999999999999999999999999999998873

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.18  E-value=0.00017  Score=57.15  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=37.6

Q ss_pred             hcCCceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 023886           23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDP   66 (276)
Q Consensus        23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~   66 (276)
                      +.++...++.++|-+|+||||+|..|+..|.+ .|..+.++|.|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~   63 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   63 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence            34555778899999999999999999998865 688999999995

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.17  E-value=0.00019  Score=54.42  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D   65 (276)
                      ...+++++|-+|+||||+|..||..|...+. .+..+|.|
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~   44 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD   44 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhH
Confidence            3467888899999999999999999987654 66677776

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.09  E-value=0.00015  Score=54.95  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .+|++++|..|+||||+|..||..+   |.++..+|.|.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d~   38 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS   38 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecch
Confidence            4678899999999999999998765   56777778763

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.09  E-value=0.00029  Score=57.84  Aligned_cols=50  Identities=12%  Similarity=0.136  Sum_probs=39.6

Q ss_pred             chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886           18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA   67 (276)
Q Consensus        18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~   67 (276)
                      .|..++.+ .+..++++.|.+|+||||++.++|..++ ..|.+|+++.++..
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~   75 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccc
Confidence            44444432 2346788999999999999999999887 57999999999854

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00023  Score=54.92  Aligned_cols=38  Identities=29%  Similarity=0.240  Sum_probs=33.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+++.+|.+|+||||+|..||..+...+...-.++.|
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d   56 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD   56 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHH
Confidence            46788999999999999999999999988887777765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.02  E-value=0.00018  Score=54.11  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++++.|.+|+||||+|..||..+   +. ..+++.|
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~---~~-~~~~~~d   35 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQL---DN-SAYIEGD   35 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS---SS-EEEEEHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc---CC-CEEEehH
Confidence            5778889999999999999888654   33 3345554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.02  E-value=0.00017  Score=54.71  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=28.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++++++|..|+||||+|..||.   +.|.++..+|.|
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~---~lg~~~~~~~~d   38 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN---LPGVPKVHFHSD   38 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT---CSSSCEEEECTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH---HhCCCEEEecHH
Confidence            57899999999999999876654   237788888876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00032  Score=58.97  Aligned_cols=42  Identities=31%  Similarity=0.376  Sum_probs=36.6

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDP   66 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~   66 (276)
                      ++.+.|+-++|..|+||||+|..|+..|++.  |.+|.+|..|-
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG  120 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence            3446788899999999999999999999864  78999999993

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00046  Score=56.42  Aligned_cols=39  Identities=18%  Similarity=0.218  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHh----------CCCcEEEEecCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPA   67 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~----------~G~kVlliD~D~~   67 (276)
                      .+.++.|.+|+||||++.++|.++|.          .+.+|++++++..
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            56788999999999999999999884          2348999999864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00065  Score=51.09  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++..+|+++.|..|+||||+|..||..+
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457888899999999999999999876

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.69  E-value=0.00051  Score=51.94  Aligned_cols=32  Identities=38%  Similarity=0.436  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++|+++ |-.|+||||++..||..|   |..  .+|+|
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l---~~~--fiD~D   33 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTD   33 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHh---CCC--eEeec
Confidence            456766 999999999999999777   554  46877

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00034  Score=51.93  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+|+.|-.|+||||+|..||..|   |..+  +|.|
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L---~~~~--id~~   34 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL---NMEF--YDSD   34 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT---TCEE--EEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCCe--Eeec
Confidence            36666999999999999999875   5554  4555

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.52  E-value=0.00086  Score=51.85  Aligned_cols=28  Identities=29%  Similarity=0.258  Sum_probs=24.0

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++.+.++++.|.+|+||||+|..||..+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4456788999999999999999998765

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0016  Score=50.62  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++.|--|+||||++..|+..|..+|.+|.++..-
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            367789999999999999999999999999988643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.001  Score=52.84  Aligned_cols=51  Identities=16%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHH------hCCCcEEEEecCCCCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHN   69 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la------~~G~kVlliD~D~~~~   69 (276)
                      |+.++.+  +..+++.+.|.+|+||||++.++|...+      ..|.+++.+|......
T Consensus        23 LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~   81 (251)
T d1szpa2          23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR   81 (251)
T ss_dssp             HHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCC
T ss_pred             HHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHH
Confidence            5566654  3457889999999999999999987654      3467899999997654

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.049  Score=43.73  Aligned_cols=50  Identities=30%  Similarity=0.357  Sum_probs=40.9

Q ss_pred             eEEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           28 LKWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        28 ~~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +|.+ ++.| -.|.||=.+|+.+|..|..+|++|-.+-+||.-|..-....+
T Consensus         2 ~kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlNvD~Gtm~P   53 (272)
T d1vcoa2           2 RKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRP   53 (272)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCS
T ss_pred             ceEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccceecCCCCCCc
Confidence            3445 5555 889999999999999999999999999999998876554433

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.07  Score=42.60  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             EEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           29 KWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        29 ~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +.+ ++.| -.|.||=.+|+.+|..|..+|+||-.+=+||.-|..-.-..+
T Consensus         4 kyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlNvD~GtmsP   54 (266)
T d1s1ma2           4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSP   54 (266)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCT
T ss_pred             eEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCCCCCc
Confidence            444 5555 889999999999999999999999999999998865544333

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.35  E-value=0.00096  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ..+++.|.+|+||||+|..||..+
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            335556999999999999888764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0021  Score=50.59  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++++.|--|+||||.+..|+..|..+|++|.+++
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            46777799999999999999999999999999886

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.0012  Score=49.76  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .|.+++.|..|+||||+|..||..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4557778999999999999999865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.27  E-value=0.0015  Score=48.11  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=25.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++++++.|.+|+||||+|..|+    +.......++.|
T Consensus         2 kklIii~G~pGsGKTTla~~L~----~~~~~~~~~~~d   35 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFI----AKNPGFYNINRD   35 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH----HHSTTEEEECHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH----HhCCCCEEechH
Confidence            5678889999999999987653    333456666665

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0018  Score=50.82  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhC-----CCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-----G~kVlliD~D~   66 (276)
                      +.|+-++|..|+||||+|..|+..|...     +.+|.+|..|-
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccc
Confidence            3466788999999999999999998754     45799999984

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.22  E-value=0.0012  Score=54.68  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      |+-++|-.|+||||++..|+..|.+.|.++++|..|.-+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            677889999999999999999999999999999999643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0029  Score=52.32  Aligned_cols=42  Identities=26%  Similarity=0.279  Sum_probs=34.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTDP   66 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---G~kVlliD~D~   66 (276)
                      ++.+-|+-++|-.|+||||+|..|...|.+.   +.+|.+|..|-
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Dd   68 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD   68 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCC
Confidence            3445677899999999999999999888764   45799999993

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.17  E-value=0.0016  Score=52.70  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +...++.++..|.+|+||||+|..+|..+   +...+.|++|
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d   66 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND   66 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecH
Confidence            34556778899999999999988877654   5678888876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.012  Score=48.08  Aligned_cols=42  Identities=12%  Similarity=0.050  Sum_probs=35.5

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+..++|..+..-.-.++.++++.++++++|. -++||++-.+
T Consensus        95 ~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~-i~fINKmDr~  136 (276)
T d2bv3a2          95 LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDKT  136 (276)
T ss_dssp             CCEEEEEEETTTSSCHHHHHHHHHHHTTTCCE-EEEEECTTST
T ss_pred             hhheEEeccccCCcchhHHHHHHHHHHcCCCE-EEEEeccccc
Confidence            46788888888888899999999999999997 5889988543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.16  E-value=0.0026  Score=51.05  Aligned_cols=64  Identities=19%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             hccccccchhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCChhHHh
Q 023886           11 ELEIPEGSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        11 ~~~~~~~~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l~~~l   74 (276)
                      +++.+..-|...+..  .....+++.|.+|+||||++..++..+... +.++..+.+.........+
T Consensus        24 ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   90 (276)
T d1fnna2          24 QLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAII   90 (276)
T ss_dssp             HHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhh
Confidence            344444445544432  234567888999999999999999999754 6688888887666554443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.15  E-value=0.0016  Score=48.72  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL   60 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl   60 (276)
                      +++.|.+|+||||+|..||..+   |..++
T Consensus         7 I~i~G~pGsGKTTia~~La~~l---~~~~i   33 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS---GLKYI   33 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCcEE
Confidence            4566999999999999998655   66653

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.0094  Score=44.54  Aligned_cols=31  Identities=19%  Similarity=0.066  Sum_probs=27.7

Q ss_pred             CCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           37 GGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        37 GGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      .|=||||-|..+|...+-.|+||++|=.=-.
T Consensus        11 ~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg   41 (157)
T d1g5ta_          11 NGKGKTTAAFGTAARAVGHGKNVGVVQFIKG   41 (157)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCCcHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence            5679999999999999999999999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.013  Score=45.67  Aligned_cols=42  Identities=10%  Similarity=0.022  Sum_probs=33.0

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      .+.+++|.-...--..++.+.+..++..|++..-+++|++-.
T Consensus        91 aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          91 MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM  132 (204)
T ss_dssp             CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEeccc
Confidence            355777777766667788999999999999876777999853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.00  E-value=0.0022  Score=50.75  Aligned_cols=52  Identities=19%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCC----------------cEEEEecCCCCC
Q 023886           18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRP----------------SVLIISTDPAHN   69 (276)
Q Consensus        18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~----------------kVlliD~D~~~~   69 (276)
                      .|+.++++  +...++++.|-+|+|||+++.++|..++..|+                +++.||++....
T Consensus        22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~   91 (258)
T d2i1qa2          22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR   91 (258)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred             HHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcC
Confidence            45666653  23578899999999999999999999886543                577777775544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.0032  Score=50.14  Aligned_cols=52  Identities=23%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL   70 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l   70 (276)
                      |+.++.+  +..+++++.|.+|+||||++.++|...+..      |.+++.++.......
T Consensus        25 LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (254)
T d1pzna2          25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP   84 (254)
T ss_dssp             HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH
T ss_pred             HHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHH
Confidence            4555554  346889999999999999999999988743      568999999876553

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.047  Score=43.81  Aligned_cols=44  Identities=27%  Similarity=0.407  Sum_probs=36.9

Q ss_pred             EEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886           30 WVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA   73 (276)
Q Consensus        30 i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~   73 (276)
                      |.++.| -.|.||=.+|+.+|..|..+|+||-++=.||.-|..-.
T Consensus         4 ifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~G   48 (273)
T d2vo1a1           4 ILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAG   48 (273)
T ss_dssp             EEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--
T ss_pred             EEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccceecCCC
Confidence            345555 88999999999999999999999999999998776543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0071  Score=47.93  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL   70 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l   70 (276)
                      |+.++.+  +..+++.+.|.+|+|||++|.++|...+..      +..|+.+|.......
T Consensus        26 LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (258)
T d1v5wa_          26 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRP   85 (258)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCH
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHH
Confidence            5555543  446889999999999999999999876533      346888888876553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.88  E-value=0.016  Score=47.19  Aligned_cols=42  Identities=10%  Similarity=0.037  Sum_probs=34.8

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+++++|..+..---.++.+.++.+++.+++. -+++|++-..
T Consensus        91 ~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~-~i~iNk~D~~  132 (267)
T d2dy1a2          91 ADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDKG  132 (267)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGGC
T ss_pred             cCceEEEeeccCCccchhHHHHHhhhhccccc-cccccccccc
Confidence            36788888888888889999999999999987 6688998653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.88  E-value=0.003  Score=48.44  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=21.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++.+|++ .|.+|+||||+|..||..+
T Consensus         2 ~~~riil-~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVL-LGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEE-ECCCCCCHHHHHHHHHHHh
Confidence            3467776 4999999999999999765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.75  E-value=0.0032  Score=49.71  Aligned_cols=35  Identities=26%  Similarity=0.241  Sum_probs=33.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|..|+|||.++.+++..+.+.|++|+.+++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            78999999999999999999999999999999876

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.57  E-value=0.0039  Score=46.70  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=23.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|-+|+||||++..||..|   |.  -.+|+|
T Consensus         3 I~liG~~GsGKsTi~k~La~~l---~~--~~~d~d   32 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL---DL--VFLDSD   32 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CC--CEEecC
Confidence            3344899999999999999888   44  356776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.55  E-value=0.0031  Score=49.47  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.5

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++.+.|.+|+||||+|..||..|
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999877

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.52  E-value=0.0035  Score=47.25  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=23.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|-+|+||||++..||..|   |..  .+|+|
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L---g~~--~id~D   34 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL---GYE--FVDTD   34 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---CCC--EEehh
Confidence            4455999999999999999766   554  56877

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0049  Score=47.25  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      .++++.|.+|+||||.|..||..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            456777889999999999999866

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0052  Score=46.72  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++|+++ |.+|+||||+|..||..+   |  ...|+.+
T Consensus         3 mrIvl~-G~pGSGKtT~a~~La~~~---g--~~~i~~~   34 (180)
T d1akya1           3 IRMVLI-GPPGAGKGTQAPNLQERF---H--AAHLATG   34 (180)
T ss_dssp             CEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHh---C--CceEecc
Confidence            566655 999999999999998765   3  4455654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.50  E-value=0.004  Score=48.01  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=24.9

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.++|+++ |.+|+||||+|..||..+   |  ...||.+
T Consensus         5 r~mrIili-G~PGSGKtT~a~~La~~~---g--~~~is~g   38 (189)
T d2ak3a1           5 RLLRAAIM-GAPGSGKGTVSSRITKHF---E--LKHLSSG   38 (189)
T ss_dssp             CCCEEEEE-CCTTSSHHHHHHHHHHHB---C--CEEEEHH
T ss_pred             cceeEEEE-CCCCCCHHHHHHHHHHHH---C--CeEEcHH
Confidence            34677766 999999999999998753   4  3445653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0033  Score=47.78  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=27.9

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      .+.+.++++.|.+|+||||+|..++.   ..|  ...|+.|.-.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~---~~~--~~~i~~D~~~   49 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV---SAG--YVHVNRDTLG   49 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG---GGT--CEEEEHHHHC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH---hcC--CEEEchHHHH
Confidence            34567889999999999999887753   233  4557777433

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0045  Score=47.67  Aligned_cols=27  Identities=33%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +...|+++.|.+|+||||+|..||..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            345677778999999999999998765

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=95.29  E-value=0.012  Score=51.98  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=32.3

Q ss_pred             CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886           36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR   77 (276)
Q Consensus        36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~   77 (276)
                      +-|+||||++..|+.+|++.|+|+.+.=  .|+++.-.||.+
T Consensus        63 p~GEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~fGiK  102 (549)
T d1eg7a_          63 PAGEGKTTTSVGLTDALARLGKRVMVCL--REPSLGPSFGIK  102 (549)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCSTHHHHTT
T ss_pred             CCCCCcceeHHhHHHHHHHhCCceEEEE--ecCCCCCccccc
Confidence            6799999999999999999999988754  345555666654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.01  Score=46.10  Aligned_cols=40  Identities=23%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH   68 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~   68 (276)
                      +.+++-|--|+||||.+..|+..|.+.|.++.++.--|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence            3467779999999999999999999999887777665543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.11  E-value=0.0051  Score=47.10  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=20.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++ +++.|.+|+||||+|..||..+
T Consensus         3 Pm~-I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLK-VMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCC-EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeE-EEEECCCCCCHHHHHHHHHHHH
Confidence            344 5567899999999999988776

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0081  Score=46.72  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHH
Q 023886           30 WVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      |+.+.|.+|+||||.|..||..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            67889999999999999999877

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.78  E-value=0.0078  Score=49.28  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=22.8

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ...+++.+.|-||+||||+|..+.....
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~~   69 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSKSD   69 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhhh
Confidence            3457888889999999999999876543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.77  E-value=0.0094  Score=44.92  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..||..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4567999999999999998876

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.75  E-value=0.063  Score=39.76  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=16.0

Q ss_pred             EEEeCCCCchHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA   49 (276)
                      +.+-|..|+||||+.-.|.
T Consensus         3 V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4566999999999988775

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.75  E-value=0.0094  Score=45.10  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..||..+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4555999999999999999887

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.74  E-value=0.0069  Score=46.55  Aligned_cols=33  Identities=30%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++++.|.+|+||||+|..||..+   |  ...|+.+
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~---g--~~~is~g   40 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTG   40 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT---C--CEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh---C--CeeEecc
Confidence            4677788999999999999887643   4  3445654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.74  E-value=0.0089  Score=47.13  Aligned_cols=46  Identities=26%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEe
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS   63 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD   63 (276)
                      .|+..+......-++++|..|+||||+|..+|..+...  +..++-++
T Consensus        35 ~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n   82 (231)
T d1iqpa2          35 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN   82 (231)
T ss_dssp             HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred             HHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEe
Confidence            34445544444557789999999999999999988643  23444444

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.73  E-value=0.011  Score=44.88  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..||..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4556999999999999999876

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.66  E-value=0.0099  Score=47.03  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=23.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +++.|.+|+||||+|..+|..+   |.....++.-
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~~~   69 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGP   69 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred             EEEECCCCCcHHHHHHHHHhcc---CCCcccccCc
Confidence            5678999999999998887654   5556666543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.017  Score=40.97  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=33.0

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D   65 (276)
                      -.+|+.|-.|+||||+|..|-..|-+.  |++|-++|.|
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            346888999999999999999999884  6899999999

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.0064  Score=46.67  Aligned_cols=38  Identities=16%  Similarity=0.096  Sum_probs=30.0

Q ss_pred             hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      |+.++.+  +..+++.+.|-+|+|||+++.++|...+..+
T Consensus        12 LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~   51 (242)
T d1n0wa_          12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI   51 (242)
T ss_dssp             HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred             HHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence            4555543  3357889999999999999999999887654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.008  Score=47.24  Aligned_cols=53  Identities=21%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             cchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCCC
Q 023886           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN   69 (276)
Q Consensus        17 ~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~~   69 (276)
                      ..++..+.+....-+++.|..|+||||+|..+|..+...  +..+..++.-...+
T Consensus        25 ~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~   79 (224)
T d1sxjb2          25 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG   79 (224)
T ss_dssp             HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCC
Confidence            345555554433335678999999999999999998854  34566665544433

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.011  Score=47.18  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      ..+.+++.|.+|+||||+|..+|..   .|..+..++...-.+
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~---~~~~~~~~~~~~~~~   90 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQE---LGYDILEQNASDVRS   90 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH---TTCEEEEECTTSCCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH---HHhhhhccccccchh
Confidence            3456788899999999999988864   467788887765444

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.026  Score=43.56  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=21.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ++.-|.+|||||+++..||..+++
T Consensus        46 ~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          46 PVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEecCCcccHHHHHHHHHHHHh
Confidence            455689999999999999999985

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.41  E-value=0.45  Score=36.16  Aligned_cols=42  Identities=10%  Similarity=0.046  Sum_probs=32.2

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY  265 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~  265 (276)
                      .+.+++|.-...-...++++.+..+..++++..-+++|++-.
T Consensus        90 aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~  131 (196)
T d1d2ea3          90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA  131 (196)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             cCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccc
Confidence            466777777766666788888888888898876778898754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.26  E-value=0.013  Score=46.29  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=24.4

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      =++++|.+|+||||+|-.+|..+   |.....++.-
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~---~~~~~~~~~~   69 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP   69 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH---TCCEEEEETT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCCeEeccCC
Confidence            35678999999999999887654   5555555543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.014  Score=45.92  Aligned_cols=54  Identities=19%  Similarity=0.303  Sum_probs=37.7

Q ss_pred             cchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHh---CCCcEEEEecCCCCCh
Q 023886           17 GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAE---VRPSVLIISTDPAHNL   70 (276)
Q Consensus        17 ~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~---~G~kVlliD~D~~~~l   70 (276)
                      ..++..+......-++++|..|+||||++..+|..+..   .+....-++.....+.
T Consensus        22 ~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~   78 (237)
T d1sxjd2          22 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI   78 (237)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccc
Confidence            34555555443333678899999999999999998863   3566777776655544

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.97  E-value=0.015  Score=43.44  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886           15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      |.+++-++++++..+|+++ |.+||||||+...+.
T Consensus         3 ~~~~~~~~~~~k~~kI~vv-G~~~~GKSsLi~rl~   36 (177)
T d1zj6a1           3 LFTRIWRLFNHQEHKVIIV-GLDNAGKTTILYQFS   36 (177)
T ss_dssp             HHHHHHHHHTTSCEEEEEE-ESTTSSHHHHHHHHH
T ss_pred             hHHHHHHHhCCCeEEEEEE-CCCCCCHHHHHHHHh
Confidence            4556667888888998877 899999999997664

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.026  Score=45.27  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+-+++.|.+|+|||++|..+|..   .|.+++.||+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~---~~~~~~~i~~~   76 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE---ARVPFITASGS   76 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH---TTCCEEEEEHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH---cCCCEEEEEhH
Confidence            455678899999999999999964   47888888764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.035  Score=44.71  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=28.8

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ..+-++..|.+|+|||++|..+|..+   |..++.|+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~   79 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS   79 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhH
Confidence            34557788999999999999999765   6777777764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.014  Score=46.35  Aligned_cols=34  Identities=24%  Similarity=0.172  Sum_probs=23.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++.|.+|+||||++..+|..+...+.....++.
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~   69 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV   69 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred             EEEECCCCCCHHHHHHHHHHhhcCcccccccccc
Confidence            5788999999999999999988554443333333

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.013  Score=45.85  Aligned_cols=48  Identities=21%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .++..+......-+++.|..|+||||++..+|..+-........++.+
T Consensus        25 ~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~   72 (227)
T d1sxjc2          25 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN   72 (227)
T ss_dssp             HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred             HHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEec
Confidence            345554443332256789999999999999999887554433334444

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.02  Score=43.13  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +|+ +.|.+|+||||+|..||..+
T Consensus         2 ~I~-i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RII-LLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEE-EEESTTSSHHHHHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHHHHh
Confidence            444 46899999999999998765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.57  E-value=0.058  Score=43.06  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=26.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +.+=++..|.+|+|||++|..+|..   .|..+.-+++
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~   73 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKICS   73 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEEC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc---cccccccccc
Confidence            3444567799999999999999865   3667766654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.49  E-value=0.024  Score=45.32  Aligned_cols=42  Identities=24%  Similarity=0.154  Sum_probs=29.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL   70 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l   70 (276)
                      .++++.|.+|+||||++..++..|.+.      ..++..+++....+.
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   94 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL   94 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccch
Confidence            356788999999999999999998643      134555555544443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.044  Score=46.42  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD   63 (276)
                      .++.++.|.+|+||||+...+...+.+    .|.+|++.-
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~A  202 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA  202 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEec
Confidence            467899999999999999887666653    466777765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.035  Score=47.74  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF   74 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l   74 (276)
                      +++-|..|+|||++..++...+.+.|..++++|  |.+.+...+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD--~kge~~~~~   94 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD--PNGDMLSKF   94 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE--ETTHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe--CChhHHHHh
Confidence            566689999999999899989999999999986  455444433

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.24  E-value=0.036  Score=45.52  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=27.2

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCC----CcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G----~kVlliD~D   65 (276)
                      ++++|-+|+||||+.++-+..+...+    .+++++-..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t   65 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT   65 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence            55668899999999998776666544    489998776

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.055  Score=43.87  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=27.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC-------CCcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~D   65 (276)
                      ++.-|.+|||||+++..||..+.+.       +++|.-+|..
T Consensus        42 ~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~   83 (268)
T d1r6bx2          42 PLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG   83 (268)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred             cEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeec
Confidence            4456899999999999999998863       4556555554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.02  E-value=0.064  Score=42.41  Aligned_cols=35  Identities=14%  Similarity=0.050  Sum_probs=27.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .+++++.|.+|+|||+++..++..   .+.....+++-
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~---~~~~~~~i~~~   63 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINE---LNLPYIYLDLR   63 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH---HTCCEEEEEGG
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHH---CCCCeEEEEec
Confidence            456778899999999998876543   46778888765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.00  E-value=0.032  Score=41.49  Aligned_cols=25  Identities=32%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV   55 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~   55 (276)
                      +++.|..|+||||+...++..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            4566899999999999999988754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.95  E-value=0.036  Score=42.78  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .|+-+.|.-|+||||+|-    .|.+.|..|  +|+|
T Consensus         3 ~iIgITG~igSGKStv~~----~l~~~G~~v--idaD   33 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIAN----LFTDLGVPL--VDAD   33 (205)
T ss_dssp             EEEEEECSTTSCHHHHHH----HHHTTTCCE--EEHH
T ss_pred             EEEEEECCCCCCHHHHHH----HHHHCCCeE--EEch
Confidence            456688999999999865    456678765  6888

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.63  E-value=0.035  Score=45.08  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=26.9

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhC-C---CcEEEEecC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEV-R---PSVLIISTD   65 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~-G---~kVlliD~D   65 (276)
                      +++.|-+|+||||+.++.+..+.+. |   .+||++..-
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            4566889999999998877666543 3   489999865

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.41  E-value=0.036  Score=41.82  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++++|..|+||||++..|...+
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            578899999999999987766544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.41  E-value=0.057  Score=38.47  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .++.++...-|.|||+++..   .+.+.|++|+++-
T Consensus         8 ~~~~ll~apTGsGKT~~~~~---~~~~~~~~vli~~   40 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLN   40 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHH---HHHTTTCCEEEEE
T ss_pred             CCEEEEEeCCCCCHHHHHHH---HHHHcCCcEEEEc
Confidence            56778889999999987643   4567888888774

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.066  Score=41.36  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      |+.+.|.-|+||||+|-    .|.+.|..  ++|+|
T Consensus         5 iIgitG~igSGKStv~~----~l~~~G~~--vidaD   34 (208)
T d1vhta_           5 IVALTGGIGSGKSTVAN----AFADLGIN--VIDAD   34 (208)
T ss_dssp             EEEEECCTTSCHHHHHH----HHHHTTCE--EEEHH
T ss_pred             EEEEECCCcCCHHHHHH----HHHHCCCc--EEEch
Confidence            67788999999999875    45678875  56888

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.044  Score=41.46  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=19.4

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSI   50 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~   50 (276)
                      +.++++++|+.|+||||+...|..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            456788899999999999875543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.14  E-value=0.047  Score=43.01  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=28.3

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      +++...-|.|||+++...+..++..|+||++|-
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            445578999999999988888888999999886

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.02  E-value=0.047  Score=42.95  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-cCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-TDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-~D~   66 (276)
                      |+|+.++|+-|+||||+|.-|+..   .|  ..++| +|+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~---~g--~~~i~~aD~   35 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSN---YS--AVKYQLAGP   35 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH---SC--EEECCTTHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh---CC--CeEEcccHH
Confidence            567888899999999998776542   35  45677 454

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.99  E-value=0.072  Score=40.25  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=24.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +.|+-+.|..|+||||+|--    |.+.|.+|  +++|
T Consensus         3 p~IIgitG~~gSGKstva~~----l~~~g~~~--~~~D   34 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAAL----LRSWGYPV--LDLD   34 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHH----HHHTTCCE--EEHH
T ss_pred             CEEEEEECCCCCCHHHHHHH----HHHCCCeE--EEcc
Confidence            45666779999999998754    45778876  4665

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.11  Score=42.94  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      .-++++.|..|||||.+|..||..+   |...+-+|+-
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l---~~~~i~~d~s   86 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS   86 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhc---cCCeeEeccc
Confidence            4456677999999999999999886   4667777765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=0.14  Score=39.24  Aligned_cols=48  Identities=19%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCC---cEEEEecC
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP---SVLIISTD   65 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~---kVlliD~D   65 (276)
                      .++++++++...-+++.|.+|+||||+|..+|..+-....   .++.|..+
T Consensus         5 ~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~   55 (198)
T d2gnoa2           5 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE   55 (198)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC
Confidence            4677777776677788899999999999999988764422   47777654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.035  Score=43.67  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=24.6

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ++++++-|-=|+||||++..|+..|...+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            57788889999999999999998876543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.72  E-value=0.027  Score=42.89  Aligned_cols=28  Identities=25%  Similarity=0.183  Sum_probs=21.8

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++.+.++++-|--|+||||++..|+..+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4445677888999999999888876544

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.47  E-value=0.051  Score=41.42  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=19.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ++++|..|+||||++..|+..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67899999999999888777654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.21  Score=41.72  Aligned_cols=39  Identities=18%  Similarity=0.094  Sum_probs=33.2

Q ss_pred             CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886          224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV  263 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~  263 (276)
                      .+++++|.-...-...++.+.++.+.+.++++ -+++|++
T Consensus       120 ~D~allVVda~eGv~~qT~~~~~~a~~~~~p~-i~viNKi  158 (341)
T d1n0ua2         120 TDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKV  158 (341)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECH
T ss_pred             cCceEEEEecccCcchhHHHHHHHHHHcCCCe-EEEEECc
Confidence            47788888888888889999999999999988 6778976

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.34  E-value=0.096  Score=43.15  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      +-+++.|.+|||||.+|-.+|..+   +.....+|+-
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~---~~~~~~i~~s   83 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT   83 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc---ccchhccccc
Confidence            444556999999999999999865   4566667764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.08  Score=41.46  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=29.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      .-|.+++|=-|+||||+-.++...  ..|+|+.+|-.|.
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~   39 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF   39 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEecc
Confidence            346788899999999987776543  4689999998774

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.19  E-value=0.083  Score=42.56  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      ..+-++..|.+|+|||+++-++|..+   |.....+++
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~   74 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG   74 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEH
Confidence            34567899999999999999998766   666666654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.16  E-value=0.07  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.196  Sum_probs=28.0

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +..+.+++.|.+|+|||++|..+|..+   |.+++-|++
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~  187 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNL  187 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSS
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEEC
Confidence            446788999999999999999988765   456665543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.03  E-value=0.12  Score=42.77  Aligned_cols=51  Identities=22%  Similarity=0.245  Sum_probs=35.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhcccc
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQRF   78 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~~~   78 (276)
                      .-++++.|..|||||.+|..||..|...+.++.-+|+-..   +..+.++|..+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~  106 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPP  106 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCC
Confidence            3466788999999999999999999766667777777532   23455555543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.091  Score=40.57  Aligned_cols=27  Identities=19%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ..-+++.|..|+||||+|..+|..+-.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            455677899999999999999988753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.01  E-value=0.049  Score=40.50  Aligned_cols=48  Identities=19%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             hhhhccccccchhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhC
Q 023886            8 QDQELEIPEGSVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEV   55 (276)
Q Consensus         8 ~~~~~~~~~~~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~   55 (276)
                      ..+++..+-..+.+.+.   .++..+++..|.=|+||||++..++.+|.-.
T Consensus        10 ~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34444445455555552   2445678889999999999999999887543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.13  Score=40.67  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=32.5

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+.....+..|--|+|||-++...+......|+.|+++-
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~  111 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV  111 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEc
Confidence            343444566699999999999999999999999999885

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.18  Score=33.41  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN   69 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~   69 (276)
                      +++|+|+    |.|||-.++  |..|+++|.+|.+.|..+...
T Consensus         5 ~K~v~Vi----GlG~sG~s~--a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           5 GKNVVII----GLGLTGLSC--VDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             TCCEEEE----CCSHHHHHH--HHHHHHTTCCCEEEESSSSCT
T ss_pred             CCEEEEE----eECHHHHHH--HHHHHHCCCEEEEeeCCcCch
Confidence            3456665    667776654  788999999999999866543

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.16  Score=39.23  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      .+|+-+.  |=.||||++..++..|...|+++.++-
T Consensus         5 ~~vI~IT--GT~GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           5 LRLVGVT--GTNGKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             SEEEEEE--SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEE--CCCcHHHHHHHHHHHHHHCCCCeEEEC
Confidence            3455333  456999999999999999999998873

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=0.015  Score=45.81  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      ++++++-|--|+||||++..|+..|...|
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            57788999999999999999998875443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.31  E-value=0.12  Score=41.43  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=26.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      ++=++..|.+|+|||+++..+|..   .|..++.+++.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~---~~~~~~~i~~~   72 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGP   72 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH---TTCEEEEECHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH---hCCeEEEEEch
Confidence            444677799999999998877764   46777777754

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.14  E-value=0.1  Score=36.53  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=25.0

Q ss_pred             EEEeCCCCchHHHHHH-HHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSS-ILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~-~lA~~la~~G~kVlliD~   64 (276)
                      .+.+.-.|.|||.++. .+...+.+.+.+++++--
T Consensus        10 ~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p   44 (140)
T d1yksa1          10 TVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAP   44 (140)
T ss_dssp             EEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeec
Confidence            4566679999998886 445566677888888763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.12  E-value=0.22  Score=37.52  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=24.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA-EVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD   63 (276)
                      .++...-|.|||+++..++.... +.|.++++|-
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            34557899999999888876555 4577888764

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.05  E-value=0.11  Score=41.90  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      -+.-|--|+|||-++...+......|+.|+++-
T Consensus       107 rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~  139 (264)
T d1gm5a3         107 RLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV  139 (264)
T ss_dssp             CEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred             eeeeccccccccHHHHHHHHHHHhcccceeEEe
Confidence            466789999999999999999999999999874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.96  E-value=0.089  Score=39.16  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=28.2

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      |||+|+.|-||.|+     .||..|++.|++|.+.+-|+.
T Consensus         1 Mki~vigGaG~iG~-----alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGK-----GLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence            57888866666664     689999999999999998863

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.89  E-value=0.061  Score=41.84  Aligned_cols=29  Identities=31%  Similarity=0.269  Sum_probs=24.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAEVR   56 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G   56 (276)
                      .+++++-|--|+||||.+..|+..|...|
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            35577889999999999999998886544

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.78  E-value=0.066  Score=44.73  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST   64 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~   64 (276)
                      +++-|-=|+||||++..|+..+...|.+|+++.=
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~E   41 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGE   41 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeC
Confidence            5777889999999999999999999999998863

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.70  E-value=0.086  Score=39.85  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILLA   53 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la   53 (276)
                      ++++|..|+||||++-.|+..+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78899999999999888866554

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.65  E-value=0.25  Score=39.14  Aligned_cols=43  Identities=14%  Similarity=-0.046  Sum_probs=30.9

Q ss_pred             CeEEEEEecCCcccHH-------HHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886          224 LTTFVCVCIPEFLSLY-------ETERLVQELTKFEIDTHNIIINQVLYD  266 (276)
Q Consensus       224 ~~~~i~V~~p~~~~~~-------ea~~~~~~l~~~~~~~~g~vvN~~~~~  266 (276)
                      .+.+++|.....-...       ++.+.+..+...|++..-+++|++-..
T Consensus       126 aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         126 ADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP  175 (245)
T ss_dssp             CSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             hcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence            4666776666543322       677888888889999878999998644

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]

Probab=89.65  E-value=0.15  Score=41.00  Aligned_cols=31  Identities=29%  Similarity=0.293  Sum_probs=28.1

Q ss_pred             CCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886           35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD   65 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~D   65 (276)
                      -|-|+|||.+|+..|..-|-.|++|.+|...
T Consensus       100 m~TGEGKTL~a~l~a~l~al~g~~vhvvTvN  130 (273)
T d1tf5a3         100 MKTGEGKTLTSTLPVYLNALTGKGVHVVTVN  130 (273)
T ss_dssp             CCTTSCHHHHHHHHHHHHHTTSSCEEEEESS
T ss_pred             ecCCCcchhHHHHHHHHHHhcCCCceEEecC
Confidence            4899999999998888888899999999887

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.1  Score=38.63  Aligned_cols=30  Identities=20%  Similarity=0.510  Sum_probs=21.9

Q ss_pred             chhhhhcCCceEEEEEeCCCCchHHHHHHHH
Q 023886           18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSIL   48 (276)
Q Consensus        18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~l   48 (276)
                      +++.+-+....+|+++ |.++|||||+.-.|
T Consensus         7 ~~~~~p~~~~~~I~lv-G~~NvGKSSL~n~L   36 (188)
T d1puia_           7 DIRHLPSDTGIEVAFA-GRSNAGKSSALNTL   36 (188)
T ss_dssp             SGGGSSCSCSEEEEEE-ECTTSSHHHHHTTT
T ss_pred             ChhHCCCccCCEEEEE-CCCCCCHHHHHHHH
Confidence            4555555566777775 89999999987655

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.41  E-value=0.15  Score=43.59  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++.++..+ .=+++++|.-|.||||+...+-..+...+++++-|. ||
T Consensus       150 l~~l~~~~-~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE-dP  195 (401)
T d1p9ra_         150 FRRLIKRP-HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DP  195 (401)
T ss_dssp             HHHHHTSS-SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SS
T ss_pred             HHHHHhhh-hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec-cC
Confidence            44444333 456778899999999999999888766677887776 44

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.16  Score=39.94  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=22.8

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      ...++++|..|+||||+|..++..+-.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            455678899999999999999988764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.99  E-value=0.13  Score=39.75  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCchHHHHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      ++++++|..|+||||+.-.|....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            568899999999999998766543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.59  E-value=0.14  Score=38.68  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=18.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      +++.|+.|+||||+|..    |.++|++
T Consensus        17 vl~~G~sG~GKStlal~----l~~~g~~   40 (176)
T d1kkma_          17 VLITGDSGVGKSETALE----LVQRGHR   40 (176)
T ss_dssp             EEEECCTTSCHHHHHHH----HHHTTCE
T ss_pred             EEEEeCCCCCHHHHHHH----HHHcCCe
Confidence            56779999999998764    5567875

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.57  E-value=0.21  Score=37.90  Aligned_cols=32  Identities=16%  Similarity=0.119  Sum_probs=23.4

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      +++...-|.|||+++..........+.||+++
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l   74 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREAIKGGKSLYV   74 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhhccCcceee
Confidence            45677899999998865544444567788877

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.28  E-value=0.18  Score=42.95  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             CCCCchHHHHHHHHHHHHHhC-------CCcEEEEecC
Q 023886           35 GKGGVGKTTCSSILSILLAEV-------RPSVLIISTD   65 (276)
Q Consensus        35 ~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~D   65 (276)
                      |.+|||||+++-.||..+.+.       |+++.-+|+.
T Consensus        50 G~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~   87 (387)
T d1qvra2          50 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG   87 (387)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHh
Confidence            889999999999999988753       4566666665

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=87.45  E-value=0.21  Score=41.32  Aligned_cols=27  Identities=37%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886           28 LKWVFVGGKGGVGKTTCSSILSILLAE   54 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA~~la~   54 (276)
                      .-++++.|.+|+|||.+|-.||..+..
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~~~~~  149 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGEALGG  149 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHhcC
Confidence            445567899999999999999988763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.00  E-value=0.17  Score=37.18  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=16.9

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHH
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSIL   48 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~l   48 (276)
                      ++..||+++ |.+||||||+-..|
T Consensus        11 ~k~~kI~lv-G~~~vGKTsLl~~l   33 (186)
T d1f6ba_          11 KKTGKLVFL-GLDNAGKTTLLHML   33 (186)
T ss_dssp             TCCEEEEEE-EETTSSHHHHHHHH
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHH
Confidence            444666655 79999999997665

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=86.96  E-value=0.16  Score=37.45  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=21.7

Q ss_pred             hhhhhcCCceEEEEEeCCCCchHHHHHHHH
Q 023886           19 VRNILEQDSLKWVFVGGKGGVGKTTCSSIL   48 (276)
Q Consensus        19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~l   48 (276)
                      +.+++.++..+|+++ |.+||||||+-..+
T Consensus         4 ~~~~~~~k~~kIvlv-G~~~vGKTSli~rl   32 (173)
T d1e0sa_           4 LSKIFGNKEMRILML-GLDAAGKTTILYKL   32 (173)
T ss_dssp             HHHHHTTCCEEEEEE-EETTSSHHHHHHHT
T ss_pred             hhhhhCCCeEEEEEE-CCCCCCHHHHHHHH
Confidence            345566666776655 89999999998765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=86.94  E-value=0.17  Score=37.82  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=18.7

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      +++.|+.|+||||+|..    |.++|++
T Consensus        18 vli~G~sg~GKS~la~~----l~~~g~~   41 (169)
T d1ko7a2          18 VLITGDSGIGKSETALE----LIKRGHR   41 (169)
T ss_dssp             EEEEESTTSSHHHHHHH----HHHTTCE
T ss_pred             EEEEeCCCCCHHHHHHH----HHHcCCe
Confidence            67789999999997754    5566875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=86.74  E-value=0.17  Score=38.19  Aligned_cols=24  Identities=29%  Similarity=0.596  Sum_probs=19.0

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPS   58 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~k   58 (276)
                      +++.|+.|+||||+|..|    .++|++
T Consensus        18 vli~G~sG~GKS~lal~l----~~~G~~   41 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDL----INKNHL   41 (177)
T ss_dssp             EEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred             EEEEcCCCCCHHHHHHHH----HHcCCc
Confidence            567799999999998665    457875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=84.99  E-value=0.27  Score=40.92  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=26.3

Q ss_pred             EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      .+++-|-=|+||||++..|+..+...+ .+..+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            357888999999999999999887665 56665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.68  E-value=0.31  Score=39.12  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=26.1

Q ss_pred             eEEEEEeCCCCchHHHHH-HHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGGKGGVGKTTCS-SILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a-~~lA~~la~~G~kVlliD   63 (276)
                      .+.+++.+.-|.|||+.. ..+.......|.+|+++-
T Consensus         9 ~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~   45 (305)
T d2bmfa2           9 KRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA   45 (305)
T ss_dssp             TCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEc
Confidence            456788899999999743 344444556788999884

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.50  E-value=0.36  Score=41.60  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=27.4

Q ss_pred             eEEEEEeC-------CCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886           28 LKWVFVGG-------KGGVGKTTCSSILSILLAEVRPSVLIIS   63 (276)
Q Consensus        28 ~~i~v~s~-------kGGvGKTT~a~~lA~~la~~G~kVlliD   63 (276)
                      |||++++.       -||.|  +++.+||.+|+++|++|-+|-
T Consensus         1 M~i~~v~~e~~P~~~~GGl~--~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLA--DVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHH--HHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHH--HHHHHHHHHHHHcCCeEEEEe
Confidence            46776653       38888  488899999999999999984

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=84.45  E-value=0.37  Score=34.55  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=15.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+|++ -|.+||||||+-..+.
T Consensus         6 ~kI~i-vG~~~vGKSSLi~~~~   26 (169)
T d1upta_           6 MRILI-LGLDGAGKTTILYRLQ   26 (169)
T ss_dssp             EEEEE-ECSTTSSHHHHHHHHH
T ss_pred             eEEEE-ECCCCCCHHHHHHHHh
Confidence            45554 4799999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=84.17  E-value=0.37  Score=35.62  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=16.9

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .+|+++ |..|+||||+.-.|.
T Consensus         9 ~kV~ii-G~~~~GKSTLin~l~   29 (186)
T d1mkya2           9 IKVAIV-GRPNVGKSTLFNAIL   29 (186)
T ss_dssp             EEEEEE-CSTTSSHHHHHHHHH
T ss_pred             CEEEEE-CCCCCCHHHHHHHHH
Confidence            566666 999999999987764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.33  Score=35.79  Aligned_cols=21  Identities=43%  Similarity=0.495  Sum_probs=16.0

Q ss_pred             eEEEEEeCCCCchHHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      .||+++ |..|||||++...+.
T Consensus         3 ~Kivvv-G~~~vGKTsLi~~~~   23 (177)
T d1kmqa_           3 KKLVIV-GDGACGKTCLLIVNS   23 (177)
T ss_dssp             EEEEEE-ESTTSSHHHHHHHHH
T ss_pred             EEEEEE-CCCCcCHHHHHHHHH
Confidence            455555 799999999986654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=83.80  E-value=0.39  Score=34.73  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=15.3

Q ss_pred             eEEEEEeCCCCchHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSIL   48 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~l   48 (276)
                      .+|++ -|.+||||||+...|
T Consensus         3 ~ki~i-vG~~~~GKTsLi~~l   22 (165)
T d1ksha_           3 LRLLM-LGLDNAGKTTILKKF   22 (165)
T ss_dssp             EEEEE-ECSTTSSHHHHHHHH
T ss_pred             EEEEE-ECCCCCCHHHHHHHH
Confidence            45554 489999999988765

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.55  E-value=0.46  Score=36.94  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ..+|+|+.+.+|.|+     .+|..|++.|.+|.++|.++.
T Consensus         2 ~gkVlITGas~GIG~-----aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCch
Confidence            357888888999998     578889999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=0.32  Score=35.45  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=16.9

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHH
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ..||+++ |..||||||+...+.
T Consensus         4 ~~Kv~li-G~~~vGKTsLl~~~~   25 (167)
T d1xtqa1           4 SRKIAIL-GYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEEE-ESTTSSHHHHHHHHH
T ss_pred             ceEEEEE-CCCCcCHHHHHHHHH
Confidence            3566665 799999999987664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=82.79  E-value=0.2  Score=41.28  Aligned_cols=22  Identities=45%  Similarity=0.620  Sum_probs=19.6

Q ss_pred             EEEeCCCCchHHHHHHHHHHHH
Q 023886           31 VFVGGKGGVGKTTCSSILSILL   52 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~l   52 (276)
                      +++.|.+|+||||+|..+|..|
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            5777999999999999999766

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=82.45  E-value=0.39  Score=35.92  Aligned_cols=39  Identities=5%  Similarity=-0.063  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHH
Q 023886          209 KDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE  247 (276)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~  247 (276)
                      .+..+.+++.+.......++.++.-....+.+....+..
T Consensus       153 ~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~  191 (195)
T d1svia_         153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            445566666665555566777777777788887665543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.27  E-value=0.48  Score=37.40  Aligned_cols=56  Identities=14%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886            9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus         9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +.++..++..+++....+.+  +++.|-.|+||+++|..+.............+|+..
T Consensus         6 S~~~~~~~~~~~~~a~~~~p--vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~   61 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCAECP--VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVAS   61 (247)
T ss_dssp             SHHHHHHHHHHHHHTTCCSC--EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTT
T ss_pred             CHHHHHHHHHHHHHhCCCCC--EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhh
Confidence            44555556666665433322  566699999999999888754444444566666654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=82.18  E-value=0.41  Score=34.05  Aligned_cols=18  Identities=33%  Similarity=0.320  Sum_probs=15.2

Q ss_pred             EEeCCCCchHHHHHHHHH
Q 023886           32 FVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        32 v~s~kGGvGKTT~a~~lA   49 (276)
                      ++-|.+||||||+...|.
T Consensus         4 vlvG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           4 LMVGLDAAGKTTILYKLK   21 (160)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHh
Confidence            455899999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=81.97  E-value=0.43  Score=34.86  Aligned_cols=20  Identities=30%  Similarity=0.341  Sum_probs=15.4

Q ss_pred             eEEEEEeCCCCchHHHHHHHH
Q 023886           28 LKWVFVGGKGGVGKTTCSSIL   48 (276)
Q Consensus        28 ~~i~v~s~kGGvGKTT~a~~l   48 (276)
                      .+|+ +-|.+||||||+...+
T Consensus        17 ~kI~-vvG~~~vGKSsLi~~l   36 (176)
T d1fzqa_          17 VRIL-LLGLDNAGKTTLLKQL   36 (176)
T ss_dssp             EEEE-EEESTTSSHHHHHHHH
T ss_pred             EEEE-EECCCCCCHHHHHHHH
Confidence            4554 4589999999998765

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=81.61  E-value=0.63  Score=33.89  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=25.2

Q ss_pred             CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecCCC
Q 023886           25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPA   67 (276)
Q Consensus        25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D~~   67 (276)
                      ++.+||+++.. |+||. ++|    +.++..|. .+.|+|.++.
T Consensus         5 ~k~~KI~IIGa-G~VG~-~lA----~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGG-TMG----YLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             SCCCEEEEECC-SHHHH-HHH----HHHHHHTCCEEEEECSSSS
T ss_pred             cCCCcEEEECC-CHHHH-HHH----HHHHhCCCceEEEEEeccc
Confidence            45688888864 99994 444    34444443 7999998874

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.50  E-value=0.65  Score=34.85  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++++++.+.||.|+.     +|..|++.|.+|.+++-++.
T Consensus        22 ~gK~vlItGasgGIG~~-----ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMR-----SAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHH-----HHHHHHhhccchhhcccchH
Confidence            55788899889999974     67889999999999998853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=81.22  E-value=0.29  Score=40.43  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++++|..|+||||+...|...+- .+.|++.|.-.+.
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~-~~~rivtiEd~~E  204 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEE  204 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCC
T ss_pred             EEEEeeccccchHHHHHHhhhcc-cccceeeccchhh
Confidence            57789999999999888776553 4568888854433

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.12  E-value=0.63  Score=37.34  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      ++++++|+.+-+|.|+.     +|..|++.|.+|.++|-+.
T Consensus        24 ~gK~alITGas~GIG~a-----iA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKG-----MTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence            34666788889999986     6788999999999999874

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.66  Score=36.20  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA   67 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~   67 (276)
                      ++.++++.+-+|.|+.     +|..|++.|.+|.++|-+..
T Consensus         5 GKvalITGas~GIG~a-----ia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           5 GLVAVITGGASGLGLA-----TAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEECTTS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence            3455677778888886     68889999999999998754

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.79  E-value=0.59  Score=35.36  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886           26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII   62 (276)
Q Consensus        26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli   62 (276)
                      +.+.|+|+   |=.||||++.-|+..|...|+++-.+
T Consensus        13 ~~~~iAIT---GTnGKTTt~~~l~~iL~~~g~~~~~~   46 (207)
T d1j6ua3          13 KKEEFAVT---GTDGKTTTTAMVAHVLKHLRKSPTVF   46 (207)
T ss_dssp             CCCEEEEE---CSSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEEE---CCCCHHHHHHHHHHHHHhCCCCCeEE
Confidence            33455554   55799999999999999999885544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.38  E-value=0.75  Score=36.00  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886           27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP   66 (276)
Q Consensus        27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~   66 (276)
                      +++++++.+-+|.||.     +|..|++.|.+|+++|-+.
T Consensus         7 GK~~lITGas~GIG~a-----ia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRG-----TVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence            4677788889999975     6889999999999999763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.55  Score=34.05  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=15.6

Q ss_pred             EEEEEeCCCCchHHHHHHHHH
Q 023886           29 KWVFVGGKGGVGKTTCSSILS   49 (276)
Q Consensus        29 ~i~v~s~kGGvGKTT~a~~lA   49 (276)
                      ||+++ |.+||||||+...+.
T Consensus         6 Kivlv-G~~~vGKTsli~~~~   25 (166)
T d1z0fa1           6 KYIII-GDMGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEEE-CSTTSSHHHHHHHHH
T ss_pred             EEEEE-CCCCcCHHHHHHHHH
Confidence            44544 899999999987764