Citrus Sinensis ID: 024006

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC
ccHHHHHHHHHEEEEEEcccHHHHHHHHHHHHHccccEEEccHHHHHHHHcHHHHHHHHHHccccccccccccccEEEEccccccHHHHHHHccccccEEEEEcccccccccEEEEEEEcHHHHccccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccc
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHccccccccEccccEEEEcccHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEccccHHcccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccccccccccccccccccccccccccHcccccHcccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccc
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRqthpevtvldppyaiqhlHNRQSMLQCVADMnlsnsygkvdvprqlvierdassipdvVLKAgltlplvakplvadgsakshELSLAYDQyslkklepplVLQEFVNHGGVLFKVYIVGEAIKVVrrfslpdvtkqdlstsagvfrfprvscaaasaddadldpcvaelpprplLERLAKELRRQLGLRLFNLDIirehgtrdqfyvidinyfpgygkmpeyeHIFTDFLLSLTqsrykkksc
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRfslpdvtkqdlstsagvfrfpRVSCAAasaddadldpCVAELPPRPLLERLAKELRRQLGLrlfnldiirehgtrdqfyvIDINYFPGYGKMPEYEHIFTDFLLsltqsrykkksc
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCaaasaddadldPCVAelpprpllerlakelrrqlGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC
**TFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLT*********
*VTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFR*********************ELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLT**R******
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC
MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC******D*DLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYK***C
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9SUG3353 Inositol-tetrakisphosphat yes no 0.945 0.733 0.830 1e-117
O81893391 Inositol-tetrakisphosphat no no 0.941 0.659 0.635 7e-90
Q84Y01342 Inositol-tetrakisphosphat N/A no 0.912 0.730 0.461 5e-60
Q9SBA5319 Inositol-tetrakisphosphat no no 0.886 0.761 0.437 4e-55
Q7ZU91396 Inositol-tetrakisphosphat yes no 0.890 0.616 0.335 9e-30
Q13572414 Inositol-tetrakisphosphat yes no 0.839 0.555 0.344 6e-28
Q5F480407 Inositol-tetrakisphosphat yes no 0.850 0.572 0.346 7e-28
Q7SY78396 Inositol-tetrakisphosphat N/A no 0.857 0.593 0.342 9e-28
Q8BYN3419 Inositol-tetrakisphosphat yes no 0.828 0.541 0.340 6e-27
P0C0T1419 Inositol-tetrakisphosphat yes no 0.828 0.541 0.344 1e-26
>sp|Q9SUG3|ITPK2_ARATH Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2 Back     alignment and function desciption
 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/259 (83%), Positives = 238/259 (91%)

Query: 15  LMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 74
           L +  GKEWR+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP
Sbjct: 90  LHKQIGKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVP 149

Query: 75  RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 134
           +QLVI++DASSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQ
Sbjct: 150 KQLVIKKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQ 209

Query: 135 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 194
           EFVNHGGVLFKVYIVGEAI+VVRRFSLPDV++++L  SAGVFRFPRVSCAAASADDADLD
Sbjct: 210 EFVNHGGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLD 269

Query: 195 PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 254
           P +AELPPRPLLERLAKELRR LGLRLFNLDIIREHGTRD+FYVIDINYFPGYGKMPEYE
Sbjct: 270 PSIAELPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYE 329

Query: 255 HIFTDFLLSLTQSRYKKKS 273
           H+FTDFLLS+ QS+ KK++
Sbjct: 330 HVFTDFLLSVVQSQCKKRA 348
Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. Phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. Also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 9
>sp|O81893|ITPK3_ARATH Inositol-tetrakisphosphate 1-kinase 3 OS=Arabidopsis thaliana GN=ITPK3 PE=2 SV=3 Back     alignment and function description
>sp|Q84Y01|ITPK1_MAIZE Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SBA5|ITPK1_ARATH Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZU91|ITPK1_DANRE Inositol-tetrakisphosphate 1-kinase OS=Danio rerio GN=itpk1 PE=2 SV=2 Back     alignment and function description
>sp|Q13572|ITPK1_HUMAN Inositol-tetrakisphosphate 1-kinase OS=Homo sapiens GN=ITPK1 PE=1 SV=2 Back     alignment and function description
>sp|Q5F480|ITPK1_CHICK Inositol-tetrakisphosphate 1-kinase OS=Gallus gallus GN=ITPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q7SY78|ITPK1_XENLA Inositol-tetrakisphosphate 1-kinase OS=Xenopus laevis GN=itpk1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BYN3|ITPK1_MOUSE Inositol-tetrakisphosphate 1-kinase OS=Mus musculus GN=Itpk1 PE=2 SV=1 Back     alignment and function description
>sp|P0C0T1|ITPK1_BOVIN Inositol-tetrakisphosphate 1-kinase OS=Bos taurus GN=ITPK1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
224081885319 predicted protein [Populus trichocarpa] 0.945 0.811 0.835 1e-127
255537904355 Inositol-tetrakisphosphate 1-kinase, put 0.945 0.729 0.880 1e-125
18413088353 inositol-tetrakisphosphate 1-kinase 2 [A 0.945 0.733 0.830 1e-116
351721983354 inositol phosphate kinase [Glycine max] 0.941 0.728 0.833 1e-115
225458958347 PREDICTED: inositol-tetrakisphosphate 1- 0.945 0.746 0.888 1e-115
356507953354 PREDICTED: inositol-tetrakisphosphate 1- 0.941 0.728 0.833 1e-115
30680654265 inositol-tetrakisphosphate 1-kinase 2 [A 0.937 0.969 0.836 1e-115
302142133315 unnamed protein product [Vitis vinifera] 0.945 0.822 0.888 1e-115
297813275363 predicted protein [Arabidopsis lyrata su 0.945 0.713 0.809 1e-115
449507262302 PREDICTED: inositol-tetrakisphosphate 1- 0.948 0.860 0.823 1e-110
>gi|224081885|ref|XP_002306515.1| predicted protein [Populus trichocarpa] gi|222855964|gb|EEE93511.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/268 (83%), Positives = 244/268 (91%), Gaps = 9/268 (3%)

Query: 15  LMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 74
           L +LTGKEWRQILE+YR+THPEVTVLDPP AIQHLHNRQSMLQCVADMNLSNSYGKV +P
Sbjct: 52  LHKLTGKEWRQILEDYRRTHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLSNSYGKVGIP 111

Query: 75  RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 134
           +Q+VI++DASSIP  V KAGL LP+VAKPLVADGSAKSHELSLAYDQ SL+KLEPPLVLQ
Sbjct: 112 KQIVIKKDASSIPGAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQQSLQKLEPPLVLQ 171

Query: 135 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 194
           EFVNHGGV+FKVYIVGE IKVVRRFSLPDV K++LS  AGVFRFPRVSCAAASAD+ADLD
Sbjct: 172 EFVNHGGVMFKVYIVGETIKVVRRFSLPDVCKRELSNIAGVFRFPRVSCAAASADNADLD 231

Query: 195 PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG-------- 246
           P VAELPPRPLLE+LA+EL R+LGLRLFNLDIIREHGTRD+FYVIDINYFPG        
Sbjct: 232 PGVAELPPRPLLEKLARELCRRLGLRLFNLDIIREHGTRDRFYVIDINYFPGESTFSFIF 291

Query: 247 -YGKMPEYEHIFTDFLLSLTQSRYKKKS 273
            YGKMPEYEHIFTDFLLSL Q++YKKKS
Sbjct: 292 CYGKMPEYEHIFTDFLLSLVQNQYKKKS 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537904|ref|XP_002510017.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] gi|223550718|gb|EEF52204.1| Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18413088|ref|NP_567334.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] gi|83288250|sp|Q9SUG3.2|ITPK2_ARATH RecName: Full=Inositol-tetrakisphosphate 1-kinase 2; AltName: Full=Inositol 1,3,4-trisphosphate 5/6-kinase 2; Short=AtItpk-2; Short=Inositol-triphosphate 5/6-kinase 2; Short=Ins(1,3,4)P(3) 5/6-kinase 2 gi|15215758|gb|AAK91424.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|16323320|gb|AAL15415.1| AT4g08170/T12G13_10 [Arabidopsis thaliana] gi|332657201|gb|AEE82601.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351721983|ref|NP_001237484.1| inositol phosphate kinase [Glycine max] gi|156752165|gb|ABU93833.1| inositol phosphate kinase [Glycine max] Back     alignment and taxonomy information
>gi|225458958|ref|XP_002285550.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507953|ref|XP_003522727.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30680654|ref|NP_849342.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] gi|332657202|gb|AEE82602.1| inositol-tetrakisphosphate 1-kinase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302142133|emb|CBI19336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297813275|ref|XP_002874521.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320358|gb|EFH50780.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449507262|ref|XP_004162980.1| PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2132487353 AT4G08170 [Arabidopsis thalian 0.927 0.719 0.728 4.2e-95
TAIR|locus:2134253391 AT4G33770 [Arabidopsis thalian 0.941 0.659 0.546 5.1e-74
TAIR|locus:2148990319 ITPK1 "inositol (1,3,4) P3 5/6 0.580 0.498 0.465 1.6e-47
ZFIN|ZDB-GENE-040426-1953396 itpk1 "inositol 1,3,4-triphosp 0.890 0.616 0.316 7.6e-25
UNIPROTKB|Q5F480407 ITPK1 "Inositol-tetrakisphosph 0.547 0.368 0.320 6.6e-24
UNIPROTKB|Q13572414 ITPK1 "Inositol-tetrakisphosph 0.485 0.321 0.355 2.1e-23
UNIPROTKB|J9NW00419 ITPK1 "Uncharacterized protein 0.485 0.317 0.333 1.1e-22
UNIPROTKB|P0C0T1419 ITPK1 "Inositol-tetrakisphosph 0.485 0.317 0.340 1.8e-22
MGI|MGI:2446159419 Itpk1 "inositol 1,3,4-triphosp 0.485 0.317 0.340 2.3e-22
RGD|1595691421 Itpk1 "inositol-tetrakisphosph 0.485 0.315 0.340 2.4e-22
TAIR|locus:2132487 AT4G08170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 185/254 (72%), Positives = 207/254 (81%)

Query:    20 GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI 79
             GKEWR+ILEE+R  HP+VTVLDPP AI HL NRQSMLQCVADMNLS+S G+V VP+QLVI
Sbjct:    95 GKEWRRILEEFRLAHPDVTVLDPPDAILHLRNRQSMLQCVADMNLSDSNGRVGVPKQLVI 154

Query:    80 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH 139
             ++DASSIP+ V  AGL LPLVAKPLVADGSAKSHELSLAYDQ+SL KLEPPLVLQEFVNH
Sbjct:   155 KKDASSIPEAVNNAGLRLPLVAKPLVADGSAKSHELSLAYDQHSLLKLEPPLVLQEFVNH 214

Query:   140 GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCXXXXXXXXXXXPCVAX 199
             GGVLFKVYIVGEAI+VVRRFSLPDV++++L  SAGVFRFPRVSC           P +A 
Sbjct:   215 GGVLFKVYIVGEAIRVVRRFSLPDVSRRELPKSAGVFRFPRVSCAAASADDADLDPSIAE 274

Query:   200 XXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTD 259
                               GLRLFNLDIIREHGTRD+FYVIDINYFPGYGKMPEYEH+FTD
Sbjct:   275 LPPRPLLERLAKELRRGLGLRLFNLDIIREHGTRDRFYVIDINYFPGYGKMPEYEHVFTD 334

Query:   260 FLLSLTQSRYKKKS 273
             FLLS+ QS+ KK++
Sbjct:   335 FLLSVVQSQCKKRA 348
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0032957 "inositol trisphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0047325 "inositol tetrakisphosphate 1-kinase activity" evidence=IEA
GO:0052725 "inositol-1,3,4-trisphosphate 6-kinase activity" evidence=IEA
GO:0052726 "inositol-1,3,4-trisphosphate 5-kinase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:2134253 AT4G33770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148990 ITPK1 "inositol (1,3,4) P3 5/6-kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1953 itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F480 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q13572 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW00 ITPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0T1 ITPK1 "Inositol-tetrakisphosphate 1-kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2446159 Itpk1 "inositol 1,3,4-triphosphate 5/6 kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1595691 Itpk1 "inositol-tetrakisphosphate 1-kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SUG3ITPK2_ARATH2, ., 7, ., 1, ., 1, 5, 90.83010.94520.7337yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1.1340.991
4th Layer2.7.1.1590.991
3rd Layer2.7.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.4486.1
hypothetical protein (319 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX2631
hypothetical protein (348 aa)
     •••0.900
gw1.XIX.770.1
hypothetical protein (311 aa)
     • •0.899
gw1.III.1387.1
hypothetical protein (309 aa)
     • •0.899
gw1.29.16.1
hypothetical protein (315 aa)
     • •0.899
estExt_fgenesh4_pg.C_LG_V0044
hypothetical protein (396 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
PLN02941328 PLN02941, PLN02941, inositol-tetrakisphosphate 1-k 1e-177
pfam05770307 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trispho 1e-148
COG0189318 COG0189, RimK, Glutathione synthase/Ribosomal prot 3e-04
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase Back     alignment and domain information 
 Score =  489 bits (1262), Expect = e-177
 Identities = 191/258 (74%), Positives = 216/258 (83%), Gaps = 3/258 (1%)

Query: 15  LMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 74
           L +L GKEWRQ LEEYR+ HP+VTVLDPP AIQ LHNRQSMLQ VAD+ LS+ YG V VP
Sbjct: 71  LHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVP 130

Query: 75  RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 134
           +QLV+  D SSIPD V  AGL  PLVAKPLVADGSAKSH++SLAYDQ  L KLEPPLVLQ
Sbjct: 131 KQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190

Query: 135 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-- 192
           EFVNHGGVLFKVY+VG+ +K VRRFSLPDV++++LS++ GV  FPRVS AAASADDAD  
Sbjct: 191 EFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNG 250

Query: 193 -LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251
            LDP VAELPPRP LE LA+ELRR+LGLRLFN D+IREHGT D++YVIDINYFPGY KMP
Sbjct: 251 GLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMP 310

Query: 252 EYEHIFTDFLLSLTQSRY 269
            YE + TDFLLSL Q +Y
Sbjct: 311 GYETVLTDFLLSLVQKKY 328

Length = 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate 5/6-kinase Back     alignment and domain information
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 100.0
PLN02941328 inositol-tetrakisphosphate 1-kinase 100.0
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.95
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.95
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.95
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.94
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.91
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 99.87
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.87
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.86
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.85
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 99.84
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.84
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.84
PRK12458338 glutathione synthetase; Provisional 99.84
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.83
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.83
PRK05246316 glutathione synthetase; Provisional 99.83
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.83
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.83
PRK14016 727 cyanophycin synthetase; Provisional 99.82
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 99.8
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.8
KOG1057 1018 consensus Arp2/3 complex-interacting protein VIP1/ 99.8
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 99.79
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 99.77
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 99.75
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.75
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.69
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.67
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 99.66
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 99.65
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 99.63
PLN02948 577 phosphoribosylaminoimidazole carboxylase 99.6
PRK06849389 hypothetical protein; Provisional 99.6
PRK07206416 hypothetical protein; Provisional 99.57
PRK05586 447 biotin carboxylase; Validated 99.56
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.54
PRK06524 493 biotin carboxylase-like protein; Validated 99.54
PRK12833 467 acetyl-CoA carboxylase biotin carboxylase subunit; 99.53
PRK08462 445 biotin carboxylase; Validated 99.51
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.51
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.5
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.5
PRK08654 499 pyruvate carboxylase subunit A; Validated 99.48
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 99.47
PRK08591 451 acetyl-CoA carboxylase biotin carboxylase subunit; 99.47
PLN02735 1102 carbamoyl-phosphate synthase 99.47
TIGR00514 449 accC acetyl-CoA carboxylase, biotin carboxylase su 99.46
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 99.45
PRK07178 472 pyruvate carboxylase subunit A; Validated 99.45
PRK02186 887 argininosuccinate lyase; Provisional 99.44
PRK06111 450 acetyl-CoA carboxylase biotin carboxylase subunit; 99.41
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 99.4
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.4
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.4
PLN02257 434 phosphoribosylamine--glycine ligase 99.39
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.36
PLN02735 1102 carbamoyl-phosphate synthase 99.36
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.36
TIGR00877 423 purD phosphoribosylamine--glycine ligase. This enz 99.32
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.29
PRK12999 1146 pyruvate carboxylase; Reviewed 99.29
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 99.28
COG0439 449 AccC Biotin carboxylase [Lipid metabolism] 99.27
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.27
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 99.23
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 99.2
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 99.19
PRK06395 435 phosphoribosylamine--glycine ligase; Provisional 99.17
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.17
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 99.15
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 99.04
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 98.99
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 98.98
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 98.97
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 98.91
PRK05784 486 phosphoribosylamine--glycine ligase; Provisional 98.89
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 98.84
COG2232389 Predicted ATP-dependent carboligase related to bio 98.82
COG3919415 Predicted ATP-grasp enzyme [General function predi 98.75
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 98.75
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 98.65
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 98.61
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 98.58
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 98.53
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 98.43
KOG3895488 consensus Synaptic vesicle protein Synapsin [Signa 98.39
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 98.24
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 98.09
COG0151 428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 97.88
PF14305239 ATPgrasp_TupA: TupA-like ATPgrasp 97.77
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 97.58
TIGR01016 386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 97.3
KOG2156 662 consensus Tubulin-tyrosine ligase-related protein 97.2
PRK00696 388 sucC succinyl-CoA synthetase subunit beta; Provisi 96.99
PF14243130 DUF4343: Domain of unknown function (DUF4343) 95.98
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 95.79
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 95.39
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 93.47
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 93.47
PF07065299 D123: D123; InterPro: IPR009772 This family contai 93.24
KOG2157 497 consensus Predicted tubulin-tyrosine ligase [Postt 92.47
PRK14046 392 malate--CoA ligase subunit beta; Provisional 89.41
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 87.84
KOG2158 565 consensus Tubulin-tyrosine ligase-related protein 86.89
COG0045 387 SucC Succinyl-CoA synthetase, beta subunit [Energy 86.6
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 82.65
PHA02117397 glutathionylspermidine synthase domain-containing 81.45
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-71  Score=510.14  Aligned_cols=251  Identities=53%  Similarity=0.933  Sum_probs=205.0

Q ss_pred             eeeeccCcHHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHh
Q 024006           13 SFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK   92 (274)
Q Consensus        13 ~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~   92 (274)
                      +||||+||..|++++|+|.++||+++||||+++++.++||.+|++.|.++.......+|++|+++++.++.+++.+.+++
T Consensus        55 vIlHKltd~~~~~~l~~y~~~hP~v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~  134 (307)
T PF05770_consen   55 VILHKLTDEDWVQQLEEYIKKHPEVVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKE  134 (307)
T ss_dssp             EEEE--CHCHHHHHHHHHHHH-TTSEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHCCCeEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999987655556689999999997666778888899


Q ss_pred             cCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccC
Q 024006           93 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS  172 (274)
Q Consensus        93 ~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~  172 (274)
                      ++++||+||||+.||||++||.|+||+++++|+++++|+++||||||+|++||||||||+++++.|+|+||++.++....
T Consensus       135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~  214 (307)
T PF05770_consen  135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDRE  214 (307)
T ss_dssp             TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCG
T ss_pred             CCCcccEEeeehhhcCCccceEEEEEECHHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776666


Q ss_pred             CceeeecCcccccccCCcCCCC--ccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006          173 AGVFRFPRVSCAAASADDADLD--PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM  250 (274)
Q Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~  250 (274)
                      .+.|+|+++++.++.+....++  ++..++|+.+.++++|.++|++|||+|||||+|++++|+++|+||||||||||+|+
T Consensus       215 ~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~v  294 (307)
T PF05770_consen  215 EIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKV  294 (307)
T ss_dssp             GCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred             ccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence            7889999999888776665555  55567888899999999999999999999999999998448999999999999999


Q ss_pred             ccchHHHHHHHHH
Q 024006          251 PEYEHIFTDFLLS  263 (274)
Q Consensus       251 ~~~~~~l~~~l~~  263 (274)
                      |+|+++|+++|++
T Consensus       295 p~f~~~l~~~~~~  307 (307)
T PF05770_consen  295 PDFESVLTDFILD  307 (307)
T ss_dssp             CTHHHHHHHHHH-
T ss_pred             CChHHHHHHHhhC
Confidence            9999999999974

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton] Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long Back     alignment and domain information
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA02117 glutathionylspermidine synthase domain-containing protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2q7d_A346 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 3e-21
2qb5_A347 Crystal Structure Of Human Inositol 1,3,4-Trisphosp 3e-21
2odt_X328 Structure Of Human Inositol 1,3,4-Trisphosphate 56- 5e-21
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase Complexed M 8e-10
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Amppnp And Mn2+ Length = 346 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 8/238 (3%)
Query: 27  LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASS 85
            +EY   HPE  VLDP  AI+ L +R    + +  +       ++  P  + +       
Sbjct: 92  FQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDD 151
Query: 86  IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFK 145
              ++ K GLT P + K  VA G+  SHE+++ ++Q  L  ++PP V+Q F+NH  VL+K
Sbjct: 152 TMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYK 210
Query: 146 VYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXX 203
           V++VGE+  VV+R SL + +       +  F    VS                V      
Sbjct: 211 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSD 270
Query: 204 XXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 261
                         G+ LF +DII  + T  Q  VIDIN FPGY  + E+   FTD L
Sbjct: 271 EVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 324
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase (Itpk1) In Complex With Adp And Mn2+ Length = 347 Back     alignment and structure
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase Length = 328 Back     alignment and structure
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 6e-89
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 2e-75
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 3e-04
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Length = 346 Back     alignment and structure
 Score =  267 bits (683), Expect = 6e-89
 Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 5/260 (1%)

Query: 18  LTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 77
               E     +EY   HPE  VLDP  AI+ L +R    + +  +       ++  P  +
Sbjct: 83  SQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM 142

Query: 78  VIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEF 136
            +          ++ K GLT P + K  VA G+  SHE+++ ++Q  L  ++PP V+Q F
Sbjct: 143 ELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNF 201

Query: 137 VNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 196
           +NH  VL+KV++VGE+  VV+R SL + +       +  F    VS   +S+   +LD  
Sbjct: 202 INHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKI 261

Query: 197 --VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 254
             V E P   ++  L++ LR+ LG+ LF +DII  + T  Q  VIDIN FPGY  + E+ 
Sbjct: 262 EGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEFF 320

Query: 255 HIFTDFLLSLTQSRYKKKSC 274
               + + ++ Q +    + 
Sbjct: 321 TDLLNHIATVLQGQSTAMAA 340
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Length = 324 Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 100.0
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 100.0
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 99.97
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.97
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 99.96
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 99.95
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.89
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.88
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.88
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.88
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.87
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.87
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.87
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.86
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.86
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.86
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.85
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.85
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.85
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.85
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.84
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.84
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.83
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 99.82
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 99.71
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.71
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.7
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 99.68
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 99.66
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 99.66
3vot_A 425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 99.65
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 99.65
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 99.64
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 99.63
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 99.62
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 99.62
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 99.6
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 99.6
2dwc_A 433 PH0318, 433AA long hypothetical phosphoribosylglyc 99.6
3ouz_A 446 Biotin carboxylase; structural genomics, center fo 99.58
1ulz_A 451 Pyruvate carboxylase N-terminal domain; biotin car 99.57
2ip4_A 417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.57
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 99.57
2yw2_A 424 Phosphoribosylamine--glycine ligase; glycinamide r 99.56
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 99.56
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.56
2dzd_A 461 Pyruvate carboxylase; biotin carboxylase, ligase; 99.55
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 99.55
3mjf_A 431 Phosphoribosylamine--glycine ligase; structural ge 99.55
2w70_A 449 Biotin carboxylase; ligase, ATP-binding, fatty aci 99.55
2vpq_A 451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 99.55
2yrx_A 451 Phosphoribosylglycinamide synthetase; glycinamide 99.54
2xcl_A 422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.53
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 99.53
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 99.52
3vmm_A 474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 99.52
2qk4_A 452 Trifunctional purine biosynthetic protein adenosi; 99.5
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.48
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 99.46
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 99.46
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 99.42
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 99.4
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 99.38
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 99.38
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 99.33
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 99.07
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 98.94
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 98.85
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 98.58
1wr2_A238 Hypothetical protein PH1789; structural genomics, 98.43
3ufx_B 397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 97.72
2nu8_B 388 SCS-beta, succinyl-COA synthetase beta chain; citr 97.68
2fp4_B 395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 97.44
2io8_A619 Bifunctional glutathionylspermidine synthetase/ami 96.03
3n6x_A474 Putative glutathionylspermidine synthase; domain o 92.09
3mwd_A 425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 90.41
2vob_A652 Trypanothione synthetase; ligase; 2.3A {Leishmania 81.23
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
Probab=100.00  E-value=9.2e-51  Score=379.61  Aligned_cols=258  Identities=32%  Similarity=0.513  Sum_probs=214.3

Q ss_pred             eeeeccCc------------HHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEe
Q 024006           13 SFLMQLTG------------KEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE   80 (274)
Q Consensus        13 ~ilHK~~~------------~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~   80 (274)
                      ++|||+++            ..+.+.|++|...||+++|+||+++++++.||+.|++.|++........||++|+|++++
T Consensus        66 vvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~  145 (346)
T 2q7d_A           66 VIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELT  145 (346)
T ss_dssp             EEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEEC
T ss_pred             EEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEe
Confidence            69999987            368899999999999999999999999999999999999986433344589999999996


Q ss_pred             cC-CCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEe
Q 024006           81 RD-ASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF  159 (274)
Q Consensus        81 ~~-~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~  159 (274)
                      +. .++..+.+...+++||+|+||+.|+||+ +|+|.++++.++|+.++.|+|+||||+|+|+||||||||+++++++|+
T Consensus       146 ~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~  224 (346)
T 2q7d_A          146 SLCGDDTMRLLEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRP  224 (346)
T ss_dssp             SCCCTTHHHHHHHTTCCSSEEEECSBCSSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEE
T ss_pred             CCCHHHHHHHHHhcCCCCCEEEEecCCCcce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEe
Confidence            43 3456666666789999999999999997 999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccCCceeeecC--cccccccCCcCCCCc--cccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCe
Q 024006          160 SLPDVTKQDLSTSAGVFRFPR--VSCAAASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQ  235 (274)
Q Consensus       160 S~p~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~  235 (274)
                      |+|+|..+.  +..|+|+|..  ++++|+......+++  ...++++.++++++|.+++++||++++|||+|++.++| +
T Consensus       225 sl~~~~~~~--~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~  301 (346)
T 2q7d_A          225 SLKNFSAGT--SDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-Q  301 (346)
T ss_dssp             CCCCCC------CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-C
T ss_pred             cCCCcCcCc--cccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-C
Confidence            999887653  2456777765  566665433332221  12345667889999999999999999999999986455 6


Q ss_pred             EEEEeccCCCCCCCcccchHHHHHHHHHHHHhhccccCC
Q 024006          236 FYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC  274 (274)
Q Consensus       236 ~~ViDVN~fPg~~g~~~~~~~l~~~l~~~~~~~~~~~~~  274 (274)
                      +||+|||+||||+|++++..++.++|++++++++...+|
T Consensus       302 ~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~~~~~~  340 (346)
T 2q7d_A          302 HAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAA  340 (346)
T ss_dssp             EEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             EEEEEEeCCccccccchHHHHHHHHHHHHhhccCCCccc
Confidence            999999999999999999999999999999988865544
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A* Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.86
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 99.83
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.8
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.79
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.77
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 99.72
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 99.42
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 99.39
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.37
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.36
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 99.33
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 99.33
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 99.33
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 99.27
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.25
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 99.23
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.08
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 94.06
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 92.53
d2io8a3297 Glutathionylspermidine synthase, synthetase domain 81.3
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.7e-20  Score=159.91  Aligned_cols=190  Identities=13%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             CcHHHHHHhcCHHHHHHHHHh--ccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEE
Q 024006           41 DPPYAIQHLHNRQSMLQCVAD--MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA  118 (274)
Q Consensus        41 dp~~ai~~l~dR~~~~~~L~~--~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv  118 (274)
                      |++++|+.+.||..++..|..  .++..  .+++++......    +..+  .....+||+|+||..|+   +|+||.++
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~--~~~p~~~~~~~~----~~~~--~~~~~~~PvVvKP~~g~---~g~Gv~~v   69 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLGG--EKFPLIEQTYYP----NHRE--MLTLPTFPVVVKIGHAH---SGMGKVKV   69 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHCT--TTSCBCCCEEES----SGGG--GSSCCCSSEEEEESSCS---TTTTEEEE
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccCC--Cccceeeccccc----chhH--HhhhcCCceEEecCCCC---CCCCeEEE
Confidence            789999999999654433321  11211  255655543332    1222  12457899999999964   47789999


Q ss_pred             eChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcC
Q 024006          119 YDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA  191 (274)
Q Consensus       119 ~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  191 (274)
                      .++++++..       +.++++||||+ ++++++|+|+|+++.++.|++.++    +|+++.        .. +....  
T Consensus        70 ~~~~~l~~~~~~~~~~~~~~~vqe~I~-~~~dirv~vig~~~~~~~~~~~~~----~~~~n~--------~~-~~~~~--  133 (206)
T d1i7na2          70 ENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKTNT--------GS-AMLEQ--  133 (206)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCT----TTSCSC--------CC-SSEEE--
T ss_pred             eecchhhhHHHHHhhccCeEEEEEeec-ccceEEEEEEecceeEEEeecccc----cccccc--------cc-Ccccc--
Confidence            999888653       67999999996 468999999999999987776432    333221        11 10000  


Q ss_pred             CCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEeCCCCCeEEEEeccCCCCC--CCcccc-hHHHHHHHHHHHHh
Q 024006          192 DLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYFPGY--GKMPEY-EHIFTDFLLSLTQS  267 (274)
Q Consensus       192 ~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~--~g~~~~-~~~l~~~l~~~~~~  267 (274)
                             ..+ .+..++++.++++.+ ++.++|||++++. +| ++||+|||..|..  .+.... ...+.|.+.+.+++
T Consensus       134 -------~~~-~~~~~~~~~~~~~~~~~~~~~gvD~~~~~-dG-~~yvlEvN~~~~~~~~~~~~~~~~~i~d~v~~~~~~  203 (206)
T d1i7na2         134 -------IAM-SDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQ  203 (206)
T ss_dssp             -------ECC-CHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccC-ChHHHHHHHHHhhhccccceeeEEEEEcC-CC-CEEEEEEcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence                   011 234567777777776 4789999999985 55 6999999997754  222221 23466777666654
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure