Citrus Sinensis ID: 024237

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN
ccccccHHHHcccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHccccEEEEccccccccccHHHcHHHHHHHcccccccccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEEcHHcccccccccccccccccEEEcccEEEEEEcccEEEEEccccHHHHHHHHHHHHHccccEEEc
cHHHHHHHHHcccccccHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHcccccEEEHcHHHHHHHccccEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccHHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEEcHHHcccccccccccccccEEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHcccEEEEc
MWGIIRQKVaagggspvarirpVVSNLRNYSSAVKQMMVREALNSALdeemsadpkvfLMGEEVGEYQGAYKISKGLlekygpervldtpiteagftgIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAaksnymssgqisvpivfrgpngaaagvgaqhSHCYAAWyasvpglkvlspyssEDARGLLKaairdpdpvvflenellygesfpvsaevldssfclpigkakieregkdvTITAFSKIVGLSLKAAEILAKegisaevn
MWGIIRQKvaagggspvarirpvvsNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGkakieregkdvtITAFSKIVGLSLKAAEIlakegisaevn
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN
***IIR**VA******VARIRPVVSNLRNY*************************KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA*********
************************************MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV*
MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN
*W***R********SPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query270 2.2.26 [Sep-21-2011]
Q38799363 Pyruvate dehydrogenase E1 yes no 0.992 0.738 0.828 1e-129
Q6Z1G7374 Pyruvate dehydrogenase E1 yes no 0.870 0.628 0.919 1e-125
Q0J0H4376 Pyruvate dehydrogenase E1 no no 0.996 0.715 0.810 1e-124
P52904359 Pyruvate dehydrogenase E1 N/A no 0.955 0.718 0.840 1e-123
Q86HX0356 Pyruvate dehydrogenase E1 yes no 0.944 0.716 0.631 1e-93
P32473366 Pyruvate dehydrogenase E1 yes no 0.940 0.693 0.644 4e-92
O44451352 Pyruvate dehydrogenase E1 yes no 0.885 0.678 0.677 6e-92
Q09171366 Pyruvate dehydrogenase E1 yes no 0.896 0.661 0.650 4e-90
P11966359 Pyruvate dehydrogenase E1 yes no 0.877 0.660 0.645 1e-87
Q9D051359 Pyruvate dehydrogenase E1 yes no 0.877 0.660 0.632 2e-87
>sp|Q38799|ODPB1_ARATH Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2 Back     alignment and function desciption
 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/269 (82%), Positives = 245/269 (91%), Gaps = 1/269 (0%)

Query: 1   MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
           M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct: 1   MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query: 61  GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
           GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct: 60  GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query: 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
           MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct: 120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query: 181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
           PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct: 180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query: 241 VTITAFSKIVGLSLKAAEILAKEGISAEV 269
           VTI  FSK+VG +LKAAE LA+EGISAEV
Sbjct: 240 VTIVTFSKMVGFALKAAEKLAEEGISAEV 268
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1
>sp|Q6Z1G7|ODPB1_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2 SV=1 Back     alignment and function description
>sp|Q0J0H4|ODPB2_ORYSJ Pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os09g0509200 PE=2 SV=1 Back     alignment and function description
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1 Back     alignment and function description
>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDB1 PE=1 SV=2 Back     alignment and function description
>sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2 Back     alignment and function description
>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdb1 PE=4 SV=1 Back     alignment and function description
>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2 Back     alignment and function description
>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
118481185 373 unknown [Populus trichocarpa] 0.996 0.721 0.886 1e-137
296088722 429 unnamed protein product [Vitis vinifera] 0.985 0.620 0.884 1e-135
225425166367 PREDICTED: pyruvate dehydrogenase E1 com 0.985 0.724 0.884 1e-135
224053535358 predicted protein [Populus trichocarpa] 0.974 0.734 0.892 1e-135
449445580 372 PREDICTED: pyruvate dehydrogenase E1 com 0.996 0.723 0.867 1e-133
449519858 372 PREDICTED: LOW QUALITY PROTEIN: pyruvate 0.996 0.723 0.867 1e-133
255543140368 pyruvate dehydrogenase, putative [Ricinu 0.985 0.722 0.874 1e-132
224075515351 predicted protein [Populus trichocarpa] 0.925 0.712 0.92 1e-131
357501349361 Pyruvate dehydrogenase E1 component subu 0.962 0.720 0.866 1e-131
363807782360 uncharacterized protein LOC100805001 [Gl 0.959 0.719 0.866 1e-131
>gi|118481185|gb|ABK92544.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/272 (88%), Positives = 258/272 (94%), Gaps = 3/272 (1%)

Query: 1   MWGIIRQKVAAGGGSPVA---RIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKV 57
           M+GI+RQK++AGG   +A   RIRP VS  R YSSA K++ VREALNSALDEEMSADPKV
Sbjct: 1   MFGIVRQKISAGGSPLLAFGQRIRPAVSAWRGYSSAAKEITVREALNSALDEEMSADPKV 60

Query: 58  FLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTF 117
           FLMGEEVGEYQGAYKISKGLL+KYGPERVLDTPITEAGFTGIGVGAAY+GLKPV+EFMTF
Sbjct: 61  FLMGEEVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIGVGAAYHGLKPVIEFMTF 120

Query: 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLK 177
           NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYA+WYAS PGLK
Sbjct: 121 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYASWYASCPGLK 180

Query: 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIERE 237
           VL+PYSSEDARGLLKAAIRDPDPVVFLENELLYGE+FPVSAEVLDSSFC+PIGKAKIERE
Sbjct: 181 VLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGETFPVSAEVLDSSFCVPIGKAKIERE 240

Query: 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
           GKDVTITAFSK+VG +LKAAEILAKEGI+AEV
Sbjct: 241 GKDVTITAFSKMVGYALKAAEILAKEGINAEV 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296088722|emb|CBI38172.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425166|ref|XP_002264210.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 1 [Vitis vinifera] gi|359473798|ref|XP_003631360.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224053535|ref|XP_002297861.1| predicted protein [Populus trichocarpa] gi|222845119|gb|EEE82666.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449445580|ref|XP_004140550.1| PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449519858|ref|XP_004166951.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255543140|ref|XP_002512633.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223548594|gb|EEF50085.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224075515|ref|XP_002304661.1| predicted protein [Populus trichocarpa] gi|222842093|gb|EEE79640.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357501349|ref|XP_003620963.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|217073128|gb|ACJ84923.1| unknown [Medicago truncatula] gi|355495978|gb|AES77181.1| Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula] gi|388521205|gb|AFK48664.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807782|ref|NP_001242433.1| uncharacterized protein LOC100805001 [Glycine max] gi|255635914|gb|ACU18304.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query270
TAIR|locus:2152745363 MAB1 "MACCI-BOU" [Arabidopsis 0.992 0.738 0.828 1.5e-115
FB|FBgn0039635 365 CG11876 [Drosophila melanogast 0.877 0.649 0.704 2.9e-87
DICTYBASE|DDB_G0276417356 pdhB "pyruvate dehydrogenase E 0.944 0.716 0.631 1e-84
UNIPROTKB|F1N823360 PDHB "Uncharacterized protein" 0.970 0.727 0.635 1.2e-83
SGD|S000000425366 PDB1 "E1 beta subunit of the p 0.940 0.693 0.644 1.5e-83
CGD|CAL0003677379 PDB1 [Candida albicans (taxid: 0.885 0.630 0.670 2.4e-83
ZFIN|ZDB-GENE-040426-2173359 pdhb "pyruvate dehydrogenase ( 0.877 0.660 0.666 5e-83
WB|WBGene00015413352 pdhb-1 [Caenorhabditis elegans 0.911 0.698 0.668 8.2e-83
UNIPROTKB|Q2GHV6332 ECH_0149 "Putative pyruvate de 0.874 0.710 0.673 2.8e-82
TIGR_CMR|ECH_0149332 ECH_0149 "putative pyruvate de 0.874 0.710 0.673 2.8e-82
TAIR|locus:2152745 MAB1 "MACCI-BOU" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 223/269 (82%), Positives = 245/269 (91%)

Query:     1 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLM 60
             M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ALNSA+DEEMSADPKVF+M
Sbjct:     1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVM 59

Query:    61 GEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120
             GEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEFMTFNFS
Sbjct:    60 GEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFS 119

Query:   121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLS 180
             MQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHS CYAAWYASVPGLKVL+
Sbjct:   120 MQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLA 179

Query:   181 PYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD 240
             PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKD
Sbjct:   180 PYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKD 239

Query:   241 VTITAFSKIVGLSLKAAEILAKEGISAEV 269
             VTI  FSK+VG +LKAAE LA+EGISAEV
Sbjct:   240 VTIVTFSKMVGFALKAAEKLAEEGISAEV 268
GO:0003824 "catalytic activity" evidence=IEA
GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0048046 "apoplast" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0019722 "calcium-mediated signaling" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
FB|FBgn0039635 CG11876 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276417 pdhB "pyruvate dehydrogenase E1 beta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N823 PDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000000425 PDB1 "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003677 PDB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2173 pdhb "pyruvate dehydrogenase (lipoamide) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00015413 pdhb-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GHV6 ECH_0149 "Putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0149 ECH_0149 "putative pyruvate dehydrogenase complex, E1 component, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11966ODPB_BOVIN1, ., 2, ., 4, ., 10.64550.87770.6601yesno
P32473ODPB_YEAST1, ., 2, ., 4, ., 10.64450.94070.6939yesno
P11177ODPB_HUMAN1, ., 2, ., 4, ., 10.61600.87770.6601yesno
P52904ODPB_PEA1, ., 2, ., 4, ., 10.84010.95550.7186N/Ano
O44451ODPB_CAEEL1, ., 2, ., 4, ., 10.67780.88510.6789yesno
Q86HX0ODPB_DICDI1, ., 2, ., 4, ., 10.63170.94440.7162yesno
Q09171ODPB_SCHPO1, ., 2, ., 4, ., 10.65040.89620.6612yesno
Q38799ODPB1_ARATH1, ., 2, ., 4, ., 10.82890.99250.7382yesno
Q5RE79ODPB_PONAB1, ., 2, ., 4, ., 10.61600.87770.6601yesno
Q9D051ODPB_MOUSE1, ., 2, ., 4, ., 10.63290.87770.6601yesno
Q1RJX3ODPB_RICBR1, ., 2, ., 4, ., 10.62390.85180.7076yesno
Q68XA8ODPB_RICTY1, ., 2, ., 4, ., 10.59820.85180.7055yesno
Q4UKQ7ODPB_RICFE1, ., 2, ., 4, ., 10.62390.85180.7055yesno
P49432ODPB_RAT1, ., 2, ., 4, ., 10.62860.87770.6601yesno
Q92IS2ODPB_RICCN1, ., 2, ., 4, ., 10.61110.85180.7055yesno
Q9ZDR3ODPB_RICPR1, ., 2, ., 4, ., 10.59820.85180.7055yesno
Q6Z1G7ODPB1_ORYSJ1, ., 2, ., 4, ., 10.91910.87030.6283yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.976
4th Layer1.2.4.10.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I0194
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_II001653
SubName- Full=Putative uncharacterized protein; (355 aa)
••• ••• 0.992
gw1.X.5451.1
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)
••••••• 0.988
grail3.0009040502
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)
••••••• 0.988
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
• • ••• 0.975
estExt_Genewise1_v1.C_410201
hypothetical protein (414 aa)
• •  •• 0.971
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
• • ••• 0.970
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•  •••• 0.969
gw1.XIX.2128.1
hypothetical protein (435 aa)
• •  •• 0.969
estExt_fgenesh4_pg.C_LG_VIII0227
hypothetical protein (588 aa)
• • ••• 0.962
LPD3
precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)
•    •• 0.936

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 1e-180
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 1e-155
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 1e-140
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 1e-140
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-130
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 1e-107
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 9e-74
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 2e-51
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 8e-29
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 5e-20
cd06586154 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding 6e-19
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 5e-17
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 5e-12
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 3e-11
PRK12571 641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 4e-10
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 1e-09
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 1e-07
PLN02234641 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate 7e-06
PRK12315581 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate 3e-04
PLN02582 677 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate 0.003
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information 
 Score =  498 bits (1284), Expect = e-180
 Identities = 224/258 (86%), Positives = 240/258 (93%), Gaps = 1/258 (0%)

Query: 13  GGSPVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY 71
            G  + R RP  +   R Y+SA K+M VR+ALNSALDEEMSADPKVF+MGEEVGEYQGAY
Sbjct: 2   LGQLLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAY 61

Query: 72  KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSA 131
           KI+KGLL+KYGP+RVLDTPITEAGFTGIGVGAAY GLKPVVEFMTFNFSMQAIDHIINSA
Sbjct: 62  KITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSA 121

Query: 132 AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191
           AK+NYMS+GQISVPIVFRGPNGAAAGVGAQHS C+AAWY+SVPGLKVL+PYSSEDARGLL
Sbjct: 122 AKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLL 181

Query: 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG 251
           KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTI AFSK+VG
Sbjct: 182 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVG 241

Query: 252 LSLKAAEILAKEGISAEV 269
            +LKAAEILAKEGISAEV
Sbjct: 242 YALKAAEILAKEGISAEV 259

Length = 356
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|237053 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 270
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 100.0
PLN02225 701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
PLN02582 677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 100.0
PTZ00089661 transketolase; Provisional 100.0
PRK12753663 transketolase; Reviewed 100.0
PRK05899624 transketolase; Reviewed 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PRK12754663 transketolase; Reviewed 100.0
KOG0523632 consensus Transketolase [Carbohydrate transport an 100.0
PLN02790654 transketolase 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 99.97
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 99.97
PRK05261 785 putative phosphoketolase; Provisional 99.83
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.49
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.33
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.18
COG3957 793 Phosphoketolase [Carbohydrate transport and metabo 99.01
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 98.89
PRK08659 376 2-oxoglutarate ferredoxin oxidoreductase subunit a 98.59
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 98.44
PRK09627 375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 98.27
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 98.24
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 98.12
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.99
PRK08366 390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 97.89
TIGR03710 562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 97.8
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 97.67
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 97.53
PRK08367 394 porA pyruvate ferredoxin oxidoreductase subunit al 97.5
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 97.41
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.12
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 96.88
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 96.77
TIGR03297 361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 96.55
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 96.54
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 96.52
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 96.45
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.34
PRK07092 530 benzoylformate decarboxylase; Reviewed 95.42
PRK07524 535 hypothetical protein; Provisional 95.12
PRK08322 547 acetolactate synthase; Reviewed 95.12
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 95.03
PRK08611 576 pyruvate oxidase; Provisional 95.02
PRK07586 514 hypothetical protein; Validated 94.9
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 94.77
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 94.57
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 94.55
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 94.52
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 94.48
PRK06457 549 pyruvate dehydrogenase; Provisional 94.36
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 94.19
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 94.07
PRK11269 591 glyoxylate carboligase; Provisional 94.01
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 93.98
PRK07064 544 hypothetical protein; Provisional 93.91
PRK08199 557 thiamine pyrophosphate protein; Validated 93.8
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 93.78
PRK05858 542 hypothetical protein; Provisional 93.72
PLN02470 585 acetolactate synthase 93.71
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 93.43
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 93.39
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 93.29
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 93.29
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 93.21
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 93.15
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 93.07
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 92.75
PRK06546 578 pyruvate dehydrogenase; Provisional 92.73
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 92.71
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 92.65
PRK09124 574 pyruvate dehydrogenase; Provisional 92.59
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 92.51
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 92.5
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 92.39
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 92.32
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 92.29
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 92.11
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 92.08
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 92.07
PRK08617 552 acetolactate synthase; Reviewed 91.98
PRK08266 542 hypothetical protein; Provisional 91.9
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 91.89
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 91.75
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 91.64
PRK12474 518 hypothetical protein; Provisional 91.63
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 91.58
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 91.5
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 91.4
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 91.35
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 91.1
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 91.09
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 91.07
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 90.9
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 90.87
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 90.84
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 90.82
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 90.8
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 90.68
PRK08273 597 thiamine pyrophosphate protein; Provisional 90.21
PRK08155564 acetolactate synthase catalytic subunit; Validated 89.87
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 89.86
PRK08155 564 acetolactate synthase catalytic subunit; Validated 89.75
PRK08327 569 acetolactate synthase catalytic subunit; Validated 89.71
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 89.5
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 88.85
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 88.78
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 88.56
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 88.23
PRK06112 578 acetolactate synthase catalytic subunit; Validated 88.05
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 87.5
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 87.28
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 87.17
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 86.17
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 86.09
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 85.62
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 85.56
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 85.39
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 85.18
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 84.83
PRK06154 565 hypothetical protein; Provisional 84.6
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 84.03
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 83.76
PRK06163202 hypothetical protein; Provisional 83.66
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 83.15
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 82.71
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 82.04
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 81.93
COG0674 365 PorA Pyruvate:ferredoxin oxidoreductase and relate 81.41
PRK08266542 hypothetical protein; Provisional 81.23
PRK06457549 pyruvate dehydrogenase; Provisional 80.98
PRK08617552 acetolactate synthase; Reviewed 80.2
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 80.03
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 80.01
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information 
Probab=100.00  E-value=1.4e-60  Score=444.40  Aligned_cols=253  Identities=88%  Similarity=1.323  Sum_probs=230.7

Q ss_pred             ceeeccCC-CCCcCCccccccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhH
Q 024237           17 VARIRPVV-SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG   95 (270)
Q Consensus        17 ~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~   95 (270)
                      +.|-||+. .-.+.|+++..+++++++|+++|.+++++|++++++++|++.+++.|+.+++|.++|+|+||||+||||||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~   85 (356)
T PLN02683          6 LRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAG   85 (356)
T ss_pred             ccCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHH
Confidence            45667754 34588999888899999999999999999999999999998888888888899999999999999999999


Q ss_pred             HHHHHHHHhhcCCccEEEeehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCC
Q 024237           96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPG  175 (270)
Q Consensus        96 ~vg~AaGlA~~G~~Pi~~~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn  175 (270)
                      |+|+|+|||++|++||++++++||++|+||||+|++|+++||+||+.++||++++++|...+.|+||++.++++||+|||
T Consensus        86 ~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iPn  165 (356)
T PLN02683         86 FTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVPG  165 (356)
T ss_pred             HHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999998887767899998888999999999


Q ss_pred             cEEEccCCHHHHHHHHHHhHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHH
Q 024237          176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLK  255 (270)
Q Consensus       176 ~~V~~P~d~~e~~~~l~~a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~  255 (270)
                      |+|++|+|+.|++.+++++++.++|+|||+++.++++++|.....+++++.+++|+++++|+|+|+|||++|+|+++|++
T Consensus       166 l~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~  245 (356)
T PLN02683        166 LKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALK  245 (356)
T ss_pred             CEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHH
Confidence            99999999999999999999999999999988877665543332233357788999999999999999999999999999


Q ss_pred             HHHHHHhcCCCeee
Q 024237          256 AAEILAKEGISAEV  269 (270)
Q Consensus       256 Aa~~L~~~Gi~~~V  269 (270)
                      |+++|+++||+++|
T Consensus       246 Aa~~L~~~GI~v~V  259 (356)
T PLN02683        246 AAEILAKEGISAEV  259 (356)
T ss_pred             HHHHHHhcCCCEEE
Confidence            99999999999997

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 9e-86
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-85
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 4e-76
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 8e-52
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 5e-48
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 6e-48
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 6e-45
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 2e-37
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 1e-36
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 1e-32
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 1e-32
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 2e-31
2o1x_A629 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From 2e-07
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure 
Iteration: 1

 Score =  313 bits (801), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 145/234 (61%), Positives = 183/234 (78%)
Query: 36  QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
           Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14  QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 96  FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
           F GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA+
Sbjct: 74  FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
           AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F 
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269
              E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EV
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV 247
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query270
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 1e-159
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 1e-118
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 1e-116
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 1e-108
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 1e-102
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 2e-98
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 2e-10
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 2e-07
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
 Score =  446 bits (1149), Expect = e-159
 Identities = 145/245 (59%), Positives = 186/245 (75%)

Query: 25  SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE 84
            +  ++     Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +
Sbjct: 3   GSHHHHHHGSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDK 62

Query: 85  RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV 144
           R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   V
Sbjct: 63  RIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV 122

Query: 145 PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204
           PIVFRGPNGA+AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L
Sbjct: 123 PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVL 182

Query: 205 ENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEG 264
           ENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG
Sbjct: 183 ENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEG 242

Query: 265 ISAEV 269
           +  EV
Sbjct: 243 VECEV 247
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.65
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.21
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 97.48
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 92.91
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 92.06
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 91.83
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 91.62
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 90.17
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 90.0
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 89.66
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 89.34
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 89.22
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 88.89
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 88.85
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 88.29
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 88.1
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 88.01
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 87.96
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 87.21
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 86.71
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 86.49
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 85.42
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 85.05
3uk1_A 711 Transketolase; structural genomics, seattle struct 82.17
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 81.76
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 81.31
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 81.02
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 80.05
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
Probab=100.00  E-value=1.2e-53  Score=395.40  Aligned_cols=236  Identities=61%  Similarity=1.043  Sum_probs=213.7

Q ss_pred             cccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEE
Q 024237           34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE  113 (270)
Q Consensus        34 ~~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~  113 (270)
                      ..+++++++++++|.+++++|++|+++++|++.++++|..+++|+++|||+||+|+||+|++|+++|+|+|++|++||++
T Consensus        12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~   91 (341)
T 2ozl_B           12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICE   91 (341)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence            35689999999999999999999999999998767777777899999999999999999999999999999999999999


Q ss_pred             eehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHH
Q 024237          114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA  193 (270)
Q Consensus       114 ~~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~  193 (270)
                      +++++|++|++|||++++|+++||+||++++||+++.++|..+++|+||||++|++|+++|||+|++|+|++|++.++++
T Consensus        92 ~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~  171 (341)
T 2ozl_B           92 FMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS  171 (341)
T ss_dssp             CSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Confidence            76688999999999999999999999999999999988775566999999888899999999999999999999999999


Q ss_pred             hHhCCCCeEEeecccccCCCCCCcccccCCCccccCCceEEeEeCCcEEEEEechhHHHHHHHHHHHHhcCCCeee
Q 024237          194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV  269 (270)
Q Consensus       194 a~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~vl~~G~dvtIva~G~~v~~al~Aa~~L~~~Gi~~~V  269 (270)
                      +++.++|+|||++|.+|+.+.+..+.++++++.+++|+++++++|.|++||++|+++..|++|+++|+++|++++|
T Consensus       172 a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~v  247 (341)
T 2ozl_B          172 AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEV  247 (341)
T ss_dssp             HHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEE
Confidence            9999999999999877653211112234556778999999999999999999999999999999999999999987
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 270
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 1e-62
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 2e-60
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 1e-58
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 8e-52
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 5e-51
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 1e-45
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 3e-08
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 1e-06
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 1e-06
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 2e-06
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 2e-06
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 3e-06
d2r8oa1195 c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul 8e-04
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  193 bits (491), Expect = 1e-62
 Identities = 122/191 (63%), Positives = 150/191 (78%)

Query: 35  KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E 
Sbjct: 2   LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61

Query: 95  GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
           GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFRGPNGA
Sbjct: 62  GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121

Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
           +AGV AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181

Query: 215 PVSAEVLDSSF 225
               E     F
Sbjct: 182 EFPPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query270
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.2
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 99.04
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.01
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 98.61
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 98.44
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 98.39
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 98.32
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 98.28
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 97.92
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 96.72
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 96.35
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.31
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 96.15
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 96.1
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 95.9
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 95.65
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 95.23
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 94.86
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 94.65
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 94.27
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 94.26
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 93.99
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 93.48
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 93.22
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 91.6
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 91.52
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 91.5
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 83.77
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 82.7
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 81.65
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3e-51  Score=350.96  Aligned_cols=200  Identities=36%  Similarity=0.610  Sum_probs=186.8

Q ss_pred             ccchHHHHHHHHHHHHhhcCCcEEEEecCCCCCCCccccchhhHhhhCCCCeeecccchhHHHHHHHHHhhcCCccEEEe
Q 024237           35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF  114 (270)
Q Consensus        35 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~Dl~~~~g~~~~~~~~~~~~gp~R~id~GIaE~~~vg~AaGlA~~G~~Pi~~~  114 (270)
                      +.+++++|++++|.+++++|++++++++|++..+|+|+++++|.++|||||++|+||+|++|+|+|+|||++|++||+++
T Consensus         3 ~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve~   82 (204)
T d1qs0b1           3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI   82 (204)
T ss_dssp             EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             ceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEEE
Confidence            57899999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             ehhhHHHHHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCCCCCCcchHHHHHccCCCcEEEccCCHHHHHHHHHHh
Q 024237          115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA  194 (270)
Q Consensus       115 ~~~~f~~ra~dqi~~~~a~~~~~sg~~~~~pvi~~~~~G~~~~~G~tH~~~~~a~lr~iPn~~V~~P~d~~e~~~~l~~a  194 (270)
                      ++.+|+.+++|||+|++|+++||++++.++|++++++.|.+.+.|++|||+++++|+++|||+|++|+|+.|++.+++++
T Consensus        83 ~~~df~~~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~~a  162 (204)
T d1qs0b1          83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS  162 (204)
T ss_dssp             SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred             EecchhhHHHHHHHHHHHHhhcccccCcccceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987777778999999999999999999999999999999999999


Q ss_pred             HhCCCCeEEeecccccCCCCCCcccccCCCccccCCc--eEEeEeC
Q 024237          195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK--AKIEREG  238 (270)
Q Consensus       195 ~~~~~P~~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk--~~vl~~G  238 (270)
                      +++++||+++|||.+|+.+.    +++++.+..++|+  +.++++|
T Consensus       163 ~~~~~Pvi~~e~k~ly~~~~----~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         163 IECDDPVIFLEPKRLYNGPF----DGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHSSSCEEEEEEGGGSSSCC----CSCSSSCCCCSTTSTTCEEESS
T ss_pred             HhCCCcEEEEeeHHHhCCCc----cCCCccCCCCcccCccccCCCC
Confidence            99999999999999997642    3445556677776  7888876
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure