Citrus Sinensis ID: 024490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHcEEEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccc
Coil and Loop (DISEMBL)
MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGytagqrakhvprgkyvagasILAGTAVTMLMLVVLNvfpftpryiipvagmMVGNAMTVTGVTMKRLRDDIKIQLNLVETALAlgatprqatKQQVKRSLVIALspvldnaktvglislpgamtgmimggaspLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Flexible Loop (DISEMBL)
MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALAlgatprqatkqqVKRSLVIalspvldnaktVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Low Complexity Region (SEG)
MGTMDVEWLLDFLKGMIKPlaatavvllavllSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Disordered region (IsUnstruct)
****DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLES******
Disordered Region (DISOPRED)
*GTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQ*********
Disordered Region (DISEMBL)
MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGA***********RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Disordered Region (DISPRO)
**TMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLE*******
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFRTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9ZUT3	273	Protein ALUMINUM SENSITIV	yes	no	0.985	0.963	0.821	1e-121
Q5W7C1	285	UPF0014 membrane protein	yes	no	0.962	0.901	0.789	1e-112
P77307	259	UPF0014 inner membrane pr	N/A	no	0.891	0.918	0.361	2e-42
O34684	250	UPF0014 membrane protein	yes	no	0.887	0.948	0.324	8e-33
Q58348	250	UPF0014 membrane protein	yes	no	0.823	0.88	0.336	3e-29
P74369	259	UPF0014 membrane protein	N/A	no	0.898	0.926	0.314	2e-26

>sp|Q9ZUT3|ALS3_ARATH Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thaliana GN=ALS3 PE=1 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 245/263 (93%)

Query: 5   DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
           D EWL+ FLKGM+KP AA  VVLLAV+LS+ Q L +EGEMIYS+ R+FLQLSVIGFVLQF
Sbjct: 11  DYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQF 70

Query: 65  IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVF 124
           IF+Q+N GWIILAYLFMV VAGYTAGQRA+HVPRGKYVAG SILAGT++TM +LV+LNVF
Sbjct: 71  IFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVF 130

Query: 125 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184
           PFTPRY+IP+AGM+VGNAMTVTGVTMK+LRDDIK+QLNLVETALALGATPRQAT QQVKR
Sbjct: 131 PFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKR 190

Query: 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244
           +LVI+LSPVLD+ KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNM++GA+TVSSI S
Sbjct: 191 ALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITS 250

Query: 245 TYLCWPAFFTKAYQLESKVFRTD 267
           TYLCWP+FFTKAYQL++ VF +D
Sbjct: 251 TYLCWPSFFTKAYQLQTHVFSSD 273

Required for aluminum (Al) resistance/tolerance, probably by translocating Al from sensitive tissues such as growing roots to tissues less sensisitive to the toxic effects of Al.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5W7C1|STAR2_ORYSJ UPF0014 membrane protein STAR2 OS=Oryza sativa subsp. japonica GN=STAR2 PE=1 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/257 (78%), Positives = 233/257 (90%)

Query: 11  DFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDN 70
           +FL GM+KP+AATAVV +AV LSF Q+LG+EGEM+Y++ RAFLQLSVIGFVLQFIF+Q +
Sbjct: 29  EFLVGMLKPVAATAVVAMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKS 88

Query: 71  RGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRY 130
             WI+LAYLFMV VAGYTAGQRA+HVPRGK++A  SILAGT+VTM +LV L VFPFTPRY
Sbjct: 89  AAWILLAYLFMVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRY 148

Query: 131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190
           IIPVAGMMVGNAMTVTGVTMK+LR+D+ +Q  +VETALALGATPRQAT +QV+RSLVIAL
Sbjct: 149 IIPVAGMMVGNAMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIAL 208

Query: 191 SPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWP 250
           SPV+DNAKTVGLI+LPGAMTG+IMGGASPLEAIQLQIVVMNML+GASTVSSI+STYLCWP
Sbjct: 209 SPVIDNAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWP 268

Query: 251 AFFTKAYQLESKVFRTD 267
           AFFT A+QL   VF  D
Sbjct: 269 AFFTGAFQLNDAVFAAD 285

Associates with STAR2 to form a functional transmembrane ABC transporter required for detoxification of aluminum (Al) in roots. Can specifically transport UDP-glucose.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P77307|YBBM_ECOLI UPF0014 inner membrane protein YbbM OS=Escherichia coli (strain K12) GN=ybbM PE=1 SV=2

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 153/238 (64%)

Query: 22  ATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFM 81
           A  +V++A+L+S  +KL +E ++++S+ RA +QL ++G+VL++IFS D+    +L  LF+
Sbjct: 14  ALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFI 73

Query: 82  VIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGN 141
              A + A +R+K++ +    +  +I  G  +T+ +L++     F P  +IP+AGM+ GN
Sbjct: 74  CFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGN 133

Query: 142 AMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVG 201
           AM   G+    L   +  +   ++  L+LGATP+QA+   ++ S+  AL P +D+AKTVG
Sbjct: 134 AMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVG 193

Query: 202 LISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 259
           L+SLPG M+G+I  G  P++AI+ QI+V  ML+  +++S+I++ YL +  F+   +QL
Sbjct: 194 LVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQL 251

Escherichia coli (strain K12) (taxid: 83333)

>sp|O34684|YJKA_BACSU UPF0014 membrane protein YjkA OS=Bacillus subtilis (strain 168) GN=yjkA PE=3 SV=1

 Score =  140 bits (354), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 150/237 (63%)

Query: 26  VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVA 85
           VL+A+ LS   K G+E +MI + +RA +QL +IG+VL  IF  D+  +I+L  L M+ VA
Sbjct: 13  VLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVFILLMVLLMLAVA 72

Query: 86  GYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTV 145
                +R K+     +   A++     VT  +L+ L++ P T RY+IP++GM++GN+M +
Sbjct: 73  AQNVIKRKKNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVL 132

Query: 146 TGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISL 205
           + + + RL  ++ ++   ++  L+LG TP+Q+ ++ +  ++ +++ P L++ KT+GL+ L
Sbjct: 133 SSLFLNRLNSEVGVRKEEIQLILSLGGTPKQSIQRILTSAMKMSMIPTLESQKTLGLVQL 192

Query: 206 PGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESK 262
           PG MTG I+ GA P++A++ Q++++   + ++ ++ ++ + L +P+ FT   QL+  
Sbjct: 193 PGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLFTVHQQLKQN 249

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q58348|Y938_METJA UPF0014 membrane protein MJ0938 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0938 PE=3 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 139/229 (60%), Gaps = 9/229 (3%)

Query: 26  VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF---MV 82
           V++AVL+++ +KLGIE +++Y  + A +QL ++GFVL +IFS    G    A+L    M+
Sbjct: 20  VIIAVLIAYREKLGIEKKILYVSILALIQLFILGFVLLYIFSFGMVG----AFLMIGVMI 75

Query: 83  IVAGYTAGQRAKHVPRGKYVAGASI--LAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVG 140
            +A Y   +      + K      I  L  T V++ +L +  V  F P Y+IP+ GM++G
Sbjct: 76  TLASYLIMREINLKNKTKLFICLFITFLTTTIVSLAVLTIPKVVKFEPIYVIPLMGMVIG 135

Query: 141 NAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTV 200
           N M    + + ++ D +K + +++   LALGAT  +A +  +K ++  A+ P ++  K+V
Sbjct: 136 NTMNTIHLALDKIIDMVKSERDILWGYLALGATEIEALRPFIKNAVKSAVIPQMNRTKSV 195

Query: 201 GLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249
           G+I +PGAM GM++ GA+P+ A ++QI++M M++ ++ +S I+  YL +
Sbjct: 196 GVIFIPGAMVGMLLSGANPIYAAEIQIIIMWMILSSAVISGILICYLMY 244

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P74369|Y1647_SYNY3 UPF0014 membrane protein slr1647 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1647 PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 21/261 (8%)

Query: 5   DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
           D+ W+L  L   I             LL + Q L + G+++++  R  LQL V+G+ L  
Sbjct: 12  DIGWMLGLLGAAIA------------LLQW-QGLNLTGQLLWAGGRTILQLIVVGYFLAV 58

Query: 65  IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGA---SILAGTAVTMLMLVVL 121
           +FS DN   ++L    M+ +A   A  R    PR K + G    S+ A TA+++   +V+
Sbjct: 59  VFSLDNPWAVLLVLAIMLTIAAVVARNRIN--PRSKSLFGWLWLSLGASTAISLGYALVV 116

Query: 122 NVFP---FTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQAT 178
            + P   ++P+Y+IP+ GM++G  M    +  +RL   I+     +ET L LGATP QA 
Sbjct: 117 IIQPPQWYSPQYLIPLTGMILGQTMNSASLAGERLASAIQQNPREIETHLCLGATPGQAI 176

Query: 179 KQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGAST 238
               + ++  +L P ++    VGL+SLPG +TG ++ G  PL A   QI++M +++  +T
Sbjct: 177 ASYRRAAIRASLIPTVNQMMVVGLVSLPGMLTGQVLAGGDPLNASVYQILIMFLILLTNT 236

Query: 239 VSSIMSTYLCWPAFFTKAYQL 259
           +S+I  T   +  +F +  QL
Sbjct: 237 LSTIAVTATVYRQYFNQHQQL 257

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
225439809	264	PREDICTED: protein ALUMINUM SENSITIVE 3	0.988	1.0	0.867	1e-132
356536903	286	PREDICTED: protein ALUMINUM SENSITIVE 3-	0.973	0.909	0.873	1e-131
147838876	264	hypothetical protein VITISV_029250 [Viti	0.988	1.0	0.863	1e-131
255568484	264	conserved hypothetical protein [Ricinus	0.988	1.0	0.867	1e-130
224140137	279	predicted protein [Populus trichocarpa]	0.996	0.953	0.890	1e-128
224092015	279	predicted protein [Populus trichocarpa]	1.0	0.956	0.865	1e-126
359806230	291	uncharacterized protein LOC100814304 [Gl	0.981	0.900	0.828	1e-126
449440024	264	PREDICTED: protein ALUMINUM SENSITIVE 3-	0.977	0.988	0.842	1e-125
449522250	264	PREDICTED: LOW QUALITY PROTEIN: protein	0.977	0.988	0.842	1e-125
357510483	287	Protein ALUMINUM SENSITIVE [Medicago tru	0.985	0.916	0.825	1e-125

>gi|225439809|ref|XP_002274040.1| PREDICTED: protein ALUMINUM SENSITIVE 3 [Vitis vinifera]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/264 (86%), Positives = 252/264 (95%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD +W+++FL+GM+KP+AA AVVL+AV LS+ QKLG+EGEM+YSI+RAFLQLSVIGFVLQ
Sbjct: 1   MDFDWVMEFLRGMVKPVAALAVVLMAVALSYFQKLGLEGEMVYSILRAFLQLSVIGFVLQ 60

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIF+Q N GWI+L Y FMV VAGYTAGQRAKHVPRGKYVAGASILAGTAVT+ +LVVLNV
Sbjct: 61  FIFTQANSGWILLVYFFMVSVAGYTAGQRAKHVPRGKYVAGASILAGTAVTLFLLVVLNV 120

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQAT QQ+K
Sbjct: 121 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATLQQMK 180

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+LVIALSPVLDNAKTVGLISLPGAMTG+IMGGASPLEAIQ+QIVVMNML+GASTVSSIM
Sbjct: 181 RALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQVQIVVMNMLVGASTVSSIM 240

Query: 244 STYLCWPAFFTKAYQLESKVFRTD 267
           STYLCWPAFFTKAYQLE+ VFR+D
Sbjct: 241 STYLCWPAFFTKAYQLETHVFRSD 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536903|ref|XP_003536972.1| PREDICTED: protein ALUMINUM SENSITIVE 3-like [Glycine max]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/260 (87%), Positives = 251/260 (96%)

Query: 5   DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
           D+ W+++FLKGM+KP+AATAVVLLAVLLSF+QKLG+EGEM+Y++ RAFLQLS+IGFVLQF
Sbjct: 25  DLSWMVEFLKGMVKPVAATAVVLLAVLLSFMQKLGLEGEMVYAMFRAFLQLSIIGFVLQF 84

Query: 65  IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVF 124
           IF+Q N GWIILAYLFMV VAGYTAGQRAKHVPRGKYVAGASIL GTAVTM +LV+LNVF
Sbjct: 85  IFNQGNAGWIILAYLFMVCVAGYTAGQRAKHVPRGKYVAGASILTGTAVTMFLLVLLNVF 144

Query: 125 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184
           PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIK Q+NLVETALALGA+PRQAT +QVKR
Sbjct: 145 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKAQMNLVETALALGASPRQATYEQVKR 204

Query: 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244
           +LVIALSPV+DNAKTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNMLIGAST+SSIMS
Sbjct: 205 ALVIALSPVVDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTISSIMS 264

Query: 245 TYLCWPAFFTKAYQLESKVF 264
           TYLCWPAFFTKAYQLE++VF
Sbjct: 265 TYLCWPAFFTKAYQLETQVF 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838876|emb|CAN61572.1| hypothetical protein VITISV_029250 [Vitis vinifera]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/264 (86%), Positives = 248/264 (93%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD +W+++FL+GM+KP+AA AVVL+AV LS+ QKLG+EGEM+YSI+RAFLQLSVIGFVLQ
Sbjct: 1   MDFDWVMEFLRGMVKPVAALAVVLMAVALSYFQKLGLEGEMVYSILRAFLQLSVIGFVLQ 60

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIF+Q N GWI+L Y FMV VAGYTAGQRAKHVPRGKYVAGASILAGTAVT  +LVVLNV
Sbjct: 61  FIFTQANSGWILLVYFFMVSVAGYTAGQRAKHVPRGKYVAGASILAGTAVTXFLLVVLNV 120

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FPFTPRYIIPVAGMMVGN MTVTGVTMKRLRDDIKIQLNLVETALALGATPRQAT QQ K
Sbjct: 121 FPFTPRYIIPVAGMMVGNXMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATLQQXK 180

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+LVIALSPVLDNAKTVGLISLPGAMTG+IMGGASPLEAIQ QIVVMNML+GASTVSSIM
Sbjct: 181 RALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQXQIVVMNMLVGASTVSSIM 240

Query: 244 STYLCWPAFFTKAYQLESKVFRTD 267
           STYLCWPAFFTKAYQLE+ VFR+D
Sbjct: 241 STYLCWPAFFTKAYQLETHVFRSD 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568484|ref|XP_002525216.1| conserved hypothetical protein [Ricinus communis] gi|223535513|gb|EEF37182.1| conserved hypothetical protein [Ricinus communis]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/264 (86%), Positives = 248/264 (93%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD EWL +FL+GMIKP+AA + VL+AVLLSF+QKLG+E EM YSI RAFLQLSVIGFVL 
Sbjct: 1   MDFEWLSEFLRGMIKPVAALSAVLMAVLLSFMQKLGLEAEMSYSIFRAFLQLSVIGFVLH 60

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIF+QD   WIILAYLFMV VAGYTAGQRAKHVPRGKYVAGASILAGT++TM +LV+LNV
Sbjct: 61  FIFNQDRSFWIILAYLFMVSVAGYTAGQRAKHVPRGKYVAGASILAGTSLTMFLLVILNV 120

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIK+Q++LVETALALGATPRQAT QQVK
Sbjct: 121 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKVQMSLVETALALGATPRQATLQQVK 180

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+LVIALSPVLDNAKTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNMLIGASTVSSIM
Sbjct: 181 RALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 240

Query: 244 STYLCWPAFFTKAYQLESKVFRTD 267
           STYLCWPAFFT AYQLE+KVF +D
Sbjct: 241 STYLCWPAFFTPAYQLETKVFSSD 264

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140137|ref|XP_002323441.1| predicted protein [Populus trichocarpa] gi|222868071|gb|EEF05202.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/266 (89%), Positives = 254/266 (95%)

Query: 2   GTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFV 61
           G+ + EWLL FLKGMIKPLAATAVVL+AV+LS++Q LG+ GEM+YSIVRAFLQLSVIGFV
Sbjct: 14  GSYNFEWLLTFLKGMIKPLAATAVVLVAVILSYMQNLGLGGEMVYSIVRAFLQLSVIGFV 73

Query: 62  LQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVL 121
           LQFIFSQD+  WIILAY+FMV VAGYTAGQRAKHVPRGK VAGASILAGTAVTM +LV+L
Sbjct: 74  LQFIFSQDHAVWIILAYIFMVSVAGYTAGQRAKHVPRGKLVAGASILAGTAVTMFLLVIL 133

Query: 122 NVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQ 181
           NVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIK+Q+NLVETALALGATPRQAT QQ
Sbjct: 134 NVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKVQMNLVETALALGATPRQATLQQ 193

Query: 182 VKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSS 241
           VKR+LVIALSPVLDNAKTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNMLIGASTVSS
Sbjct: 194 VKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTVSS 253

Query: 242 IMSTYLCWPAFFTKAYQLESKVFRTD 267
           IMSTYLCWPAFFTKAYQLE+KVF TD
Sbjct: 254 IMSTYLCWPAFFTKAYQLETKVFSTD 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092015|ref|XP_002309439.1| predicted protein [Populus trichocarpa] gi|222855415|gb|EEE92962.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/267 (86%), Positives = 255/267 (95%)

Query: 1   MGTMDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGF 60
           +G  + EWL+ FLKGM+KPLAATAVVL+AV+LS++QKLG+EGEM+YSI+R+FLQLSVIGF
Sbjct: 13  IGDDNFEWLIKFLKGMLKPLAATAVVLMAVILSYMQKLGLEGEMVYSIIRSFLQLSVIGF 72

Query: 61  VLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVV 120
           VLQFIF+QD+  WIILAYLFMV VAGYTAGQRAK VPRGK+VAGASIL GTAVT+++LVV
Sbjct: 73  VLQFIFNQDHAVWIILAYLFMVSVAGYTAGQRAKQVPRGKFVAGASILIGTAVTLVLLVV 132

Query: 121 LNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180
           LNVFPFTPRYIIPVAGMMVGNAMTVTGV MKRLRDDIK+Q+NLVETALALGATPRQAT Q
Sbjct: 133 LNVFPFTPRYIIPVAGMMVGNAMTVTGVAMKRLRDDIKVQMNLVETALALGATPRQATLQ 192

Query: 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVS 240
           QVKR+L+IALSPVLDNAKTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNMLIGASTVS
Sbjct: 193 QVKRALIIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTVS 252

Query: 241 SIMSTYLCWPAFFTKAYQLESKVFRTD 267
           SIMSTYLCWPAFFTKAYQLE+KVF TD
Sbjct: 253 SIMSTYLCWPAFFTKAYQLETKVFSTD 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806230|ref|NP_001241465.1| uncharacterized protein LOC100814304 [Glycine max] gi|255640967|gb|ACU20763.1| unknown [Glycine max]

 Score =  456 bits (1172), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/262 (82%), Positives = 246/262 (93%)

Query: 5   DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
           D  W+++FLKGM+KP+AATAVV LAV LSF QKLG+E EM+ +IVRAF+QLS+IGFVL+F
Sbjct: 30  DWSWMMEFLKGMVKPVAATAVVCLAVALSFYQKLGLELEMVVAIVRAFIQLSIIGFVLEF 89

Query: 65  IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVF 124
           IF QDN GWI+LAYLFMV +AGYTAGQRAKHVPRGKYVAGASIL GTAVTML+LV L+VF
Sbjct: 90  IFRQDNAGWILLAYLFMVSIAGYTAGQRAKHVPRGKYVAGASILTGTAVTMLVLVALSVF 149

Query: 125 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184
           PFTPRYIIPVAGMMVGN+MTVTGVTMKRLRDDIK Q+NLVETAL+LGATPRQAT +QVKR
Sbjct: 150 PFTPRYIIPVAGMMVGNSMTVTGVTMKRLRDDIKTQMNLVETALSLGATPRQATHEQVKR 209

Query: 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244
           +L++ALSPV+DN KTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNM+IGA+TVSSIM+
Sbjct: 210 ALILALSPVVDNTKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATVSSIMA 269

Query: 245 TYLCWPAFFTKAYQLESKVFRT 266
           TYLCWPAFFTKAYQLE+KVF +
Sbjct: 270 TYLCWPAFFTKAYQLETKVFSS 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440024|ref|XP_004137785.1| PREDICTED: protein ALUMINUM SENSITIVE 3-like [Cucumis sativus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/261 (84%), Positives = 241/261 (92%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD++WLLDFL+GM KP  ATA+V+LAVLLS+ QKLG+E EMIY+I RAFLQLSVIGFVLQ
Sbjct: 1   MDLQWLLDFLQGMTKPFLATAIVVLAVLLSYFQKLGLEAEMIYAIFRAFLQLSVIGFVLQ 60

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIFSQ N  WI+LAYLFMV VAGYTAGQRAKHVPRGK VAGASIL GT+VTM+MLVVL V
Sbjct: 61  FIFSQQNLSWILLAYLFMVTVAGYTAGQRAKHVPRGKLVAGASILTGTSVTMVMLVVLRV 120

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FP TPRYIIPVAGMMVGN+MTVTGVTMKRLRDDI+ Q +LVETALALGATPRQAT QQVK
Sbjct: 121 FPLTPRYIIPVAGMMVGNSMTVTGVTMKRLRDDIRTQFSLVETALALGATPRQATHQQVK 180

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+LV+ALSPV+DNAKTVGLISLPGAMTG+IMGGASP+EAIQLQIVVMN LIGASTVSSIM
Sbjct: 181 RALVVALSPVVDNAKTVGLISLPGAMTGLIMGGASPIEAIQLQIVVMNFLIGASTVSSIM 240

Query: 244 STYLCWPAFFTKAYQLESKVF 264
           STYLCWP+FFT AYQLE+ VF
Sbjct: 241 STYLCWPSFFTAAYQLETAVF 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522250|ref|XP_004168140.1| PREDICTED: LOW QUALITY PROTEIN: protein ALUMINUM SENSITIVE 3-like [Cucumis sativus]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/261 (84%), Positives = 240/261 (91%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD++WLLDFL+GM KP  ATA+V+LAVLLS+ QKLG+E EMIY+I RAFLQLSVIGFVLQ
Sbjct: 1   MDLQWLLDFLQGMTKPFLATAIVVLAVLLSYFQKLGLEAEMIYAIFRAFLQLSVIGFVLQ 60

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIFSQ N  WI+LAYLFMV VAGYTAGQRAKHVPRGK VAGASIL GT VTM+MLVVL V
Sbjct: 61  FIFSQQNLSWILLAYLFMVTVAGYTAGQRAKHVPRGKLVAGASILTGTLVTMVMLVVLRV 120

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FP TPRYIIPVAGMMVGN+MTVTGVTMKRLRDDI+ Q +LVETALALGATPRQAT QQVK
Sbjct: 121 FPLTPRYIIPVAGMMVGNSMTVTGVTMKRLRDDIRTQFSLVETALALGATPRQATHQQVK 180

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+LV+ALSPV+DNAKTVGLISLPGAMTG+IMGGASP+EAIQLQIVVMN LIGASTVSSIM
Sbjct: 181 RALVVALSPVVDNAKTVGLISLPGAMTGLIMGGASPIEAIQLQIVVMNFLIGASTVSSIM 240

Query: 244 STYLCWPAFFTKAYQLESKVF 264
           STYLCWP+FFT AYQLE+ VF
Sbjct: 241 STYLCWPSFFTAAYQLETAVF 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510483|ref|XP_003625530.1| Protein ALUMINUM SENSITIVE [Medicago truncatula] gi|355500545|gb|AES81748.1| Protein ALUMINUM SENSITIVE [Medicago truncatula]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/263 (82%), Positives = 244/263 (92%)

Query: 4   MDVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQ 63
           MD+ WL +FLKGM+KP+ ATAVV LA+ LSF QKLG+E EMI +++RAFLQLS+IGFVLQ
Sbjct: 25  MDLSWLSEFLKGMVKPVCATAVVFLALGLSFSQKLGLEVEMIIAVLRAFLQLSIIGFVLQ 84

Query: 64  FIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV 123
           FIF+QDN GWI+LAYLFMV +AGYTAGQRAK VPRGK VAGASIL GTA+TM +LV L+V
Sbjct: 85  FIFNQDNSGWILLAYLFMVSIAGYTAGQRAKQVPRGKLVAGASILTGTAITMFVLVALSV 144

Query: 124 FPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK 183
           FPFTPRYIIPVAGMMVGN+MTVTGVTMKRLRDDIK Q+NLVETALALGATPRQAT QQVK
Sbjct: 145 FPFTPRYIIPVAGMMVGNSMTVTGVTMKRLRDDIKAQMNLVETALALGATPRQATHQQVK 204

Query: 184 RSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243
           R+L+IALSPV+DN KTVGLISLPGAMTG+IMGGASPLEAIQLQIVVMNM+IGA+T+SSIM
Sbjct: 205 RALIIALSPVVDNTKTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMMIGAATISSIM 264

Query: 244 STYLCWPAFFTKAYQLESKVFRT 266
           +TYLCWPAFFTKAYQLE+KVF T
Sbjct: 265 ATYLCWPAFFTKAYQLETKVFST 287

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2049751	273	ALS3 "ALUMINUM SENSITIVE 3" [A	0.985	0.963	0.787	3e-108
UNIPROTKB|Q5W7C1	285	STAR2 "UPF0014 membrane protei	0.962	0.901	0.754	2.1e-100
UNIPROTKB|P77307	259	ybbM "putative metal resistanc	0.850	0.876	0.361	1.1e-39
UNIPROTKB|Q3AFU4	248	CHY_0118 "ABC transporter, per	0.842	0.907	0.365	3.7e-39
TIGR_CMR|CHY_0118	248	CHY_0118 "ABC transporter, per	0.842	0.907	0.365	3.7e-39
UNIPROTKB|Q81XQ7	265	BAS4811 "Membrane protein, put	0.842	0.849	0.331	8.2e-28
TIGR_CMR|BA_5176	265	BA_5176 "membrane protein, put	0.842	0.849	0.331	8.2e-28
UNIPROTKB|Q60CD9	263	MCA0169 "Conserved hypothetica	0.853	0.866	0.327	1.3e-27
UNIPROTKB|Q47WS4	238	CPS_4093 "Putative membrane pr	0.696	0.781	0.277	1.6e-15
TIGR_CMR|CPS_4093	238	CPS_4093 "putative membrane pr	0.696	0.781	0.277	1.6e-15

TAIR|locus:2049751 ALS3 "ALUMINUM SENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 207/263 (78%), Positives = 235/263 (89%)

Query:     5 DVEWLLDFLKGMIKPXXXXXXXXXXXXXSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
             D EWL+ FLKGM+KP             S+ Q L +EGEMIYS+ R+FLQLSVIGFVLQF
Sbjct:    11 DYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQF 70

Query:    65 IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVF 124
             IF+Q+N GWIILAYLFMV VAGYTAGQRA+HVPRGKYVAG SILAGT++TM +LV+LNVF
Sbjct:    71 IFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVF 130

Query:   125 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184
             PFTPRY+IP+AGM+VGNAMTVTGVTMK+LRDDIK+QLNLVETALALGATPRQAT QQVKR
Sbjct:   131 PFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKR 190

Query:   185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244
             +LVI+LSPVLD+ KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNM++GA+TVSSI S
Sbjct:   191 ALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITS 250

Query:   245 TYLCWPAFFTKAYQLESKVFRTD 267
             TYLCWP+FFTKAYQL++ VF +D
Sbjct:   251 TYLCWPSFFTKAYQLQTHVFSSD 273

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0010044 "response to aluminum ion" evidence=IMP

UNIPROTKB|Q5W7C1 STAR2 "UPF0014 membrane protein STAR2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 194/257 (75%), Positives = 222/257 (86%)

Query:    11 DFLKGMIKPXXXXXXXXXXXXXSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDN 70
             +FL GM+KP             SF Q+LG+EGEM+Y++ RAFLQLSVIGFVLQFIF+Q +
Sbjct:    29 EFLVGMLKPVAATAVVAMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKS 88

Query:    71 RGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRY 130
               WI+LAYLFMV VAGYTAGQRA+HVPRGK++A  SILAGT+VTM +LV L VFPFTPRY
Sbjct:    89 AAWILLAYLFMVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRY 148

Query:   131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190
             IIPVAGMMVGNAMTVTGVTMK+LR+D+ +Q  +VETALALGATPRQAT +QV+RSLVIAL
Sbjct:   149 IIPVAGMMVGNAMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIAL 208

Query:   191 SPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWP 250
             SPV+DNAKTVGLI+LPGAMTG+IMGGASPLEAIQLQIVVMNML+GASTVSSI+STYLCWP
Sbjct:   209 SPVIDNAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWP 268

Query:   251 AFFTKAYQLESKVFRTD 267
             AFFT A+QL   VF  D
Sbjct:   269 AFFTGAFQLNDAVFAAD 285

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

UNIPROTKB|P77307 ybbM "putative metal resistance protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 82/227 (36%), Positives = 144/227 (63%)

Query:    33 SFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQR 92
             S  +KL +E ++++S+ RA +QL ++G+VL++IFS D+    +L  LF+   A + A +R
Sbjct:    25 SHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKR 84

Query:    93 AKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKR 152
             +K++ +    +  +I  G  +T+ +L++     F P  +IP+AGM+ GNAM   G+    
Sbjct:    85 SKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNN 144

Query:   153 LRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGM 212
             L   +  +   ++  L+LGATP+QA+   ++ S+  AL P +D+AKTVGL+SLPG M+G+
Sbjct:   145 LGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGL 204

Query:   213 IMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 259
             I  G  P++AI+ QI+V  ML+  +++S+I++ YL +  F+   +QL
Sbjct:   205 IFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQL 251

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3AFU4 CHY_0118 "ABC transporter, permease protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 83/227 (36%), Positives = 140/227 (61%)

Query:    36 QKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF-MVIVAGYTAGQRAK 94
             +KL +E +++   +RA +QL  +G++L+FIF+++N  W   A L  MV+ A Y AG+R +
Sbjct:    23 EKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNF-WFTTALLLVMVLNAAYIAGKRGE 81

Query:    95 HVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLR 154
              +     ++  +I+ G  +T+  L+      + P   IPV+GM+VGNAM   G+  + L+
Sbjct:    82 GIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIPVSGMIVGNAMVAVGLVFRSLK 141

Query:   155 DDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIM 214
                + +   VE  L+LGA PR+A    ++ S+  A+ P +D  KT+G++ LPG MTG+I+
Sbjct:   142 QTFRDRREEVEVKLSLGAPPREAAFSLIRESIKTAMLPTVDQMKTLGIVQLPGMMTGLIL 201

Query:   215 GGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLES 261
              GA+PL AI+ QI+V  ML GA TV++ +++Y  +  FF + +Q+ S
Sbjct:   202 AGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFFNEDFQIVS 248

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|CHY_0118 CHY_0118 "ABC transporter, permease protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 83/227 (36%), Positives = 140/227 (61%)

Query:    36 QKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF-MVIVAGYTAGQRAK 94
             +KL +E +++   +RA +QL  +G++L+FIF+++N  W   A L  MV+ A Y AG+R +
Sbjct:    23 EKLLLEKDLLVGSIRAVVQLVAVGYILKFIFARNNF-WFTTALLLVMVLNAAYIAGKRGE 81

Query:    95 HVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLR 154
              +     ++  +I+ G  +T+  L+      + P   IPV+GM+VGNAM   G+  + L+
Sbjct:    82 GIKNSHLISFGAIVMGLIITLGALIAFRAISYKPSQAIPVSGMIVGNAMVAVGLVFRSLK 141

Query:   155 DDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIM 214
                + +   VE  L+LGA PR+A    ++ S+  A+ P +D  KT+G++ LPG MTG+I+
Sbjct:   142 QTFRDRREEVEVKLSLGAPPREAAFSLIRESIKTAMLPTVDQMKTLGIVQLPGMMTGLIL 201

Query:   215 GGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLES 261
              GA+PL AI+ QI+V  ML GA TV++ +++Y  +  FF + +Q+ S
Sbjct:   202 AGANPLMAIKYQIMVAFMLAGAVTVAAYVASYFAYRGFFNEDFQIVS 248

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|Q81XQ7 BAS4811 "Membrane protein, putative" [Bacillus anthracis (taxid:1392)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 78/235 (33%), Positives = 131/235 (55%)

Query:    35 LQKL-GI--EGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQ 91
             L KL GI  E ++  +  R  +QL ++ +VL ++F   N  + I     +   A +   +
Sbjct:    25 LVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFENSNPFYTIALITSITTFAIFNIYK 84

Query:    92 RAKHVPRGK---YVAGASILAGTAVTMLML--VVLNVFP-FTPRYIIPVAGMMVGNAMTV 145
             R  ++P  K    VA  S++AG+   +L+   V++   P + P+YI+P+ GM+VGNAMT 
Sbjct:    85 RV-NIPMSKELKQVAALSMVAGSIGPLLLFIFVIIGHDPWYAPQYIVPITGMLVGNAMTG 143

Query:   146 TGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISL 205
               +      +++K Q   +E AL LGATP++AT   ++ +   A+ P +++   +G+ISL
Sbjct:   144 VSLGANTFLNNMKSQRGQIEGALMLGATPKEATAPLIRDAFDSAILPTINSMVGMGIISL 203

Query:   206 PGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLE 260
             PG MTG I+ G SP  AIQ QI ++  + G++  + I+   L +  FF K  QL+
Sbjct:   204 PGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVIIFLQLGYKTFFNKRCQLK 258

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_5176 BA_5176 "membrane protein, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 78/235 (33%), Positives = 131/235 (55%)

Query:    35 LQKL-GI--EGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQ 91
             L KL GI  E ++  +  R  +QL ++ +VL ++F   N  + I     +   A +   +
Sbjct:    25 LVKLKGIPREKQIALATFRMTIQLVLVAYVLTYVFENSNPFYTIALITSITTFAIFNIYK 84

Query:    92 RAKHVPRGK---YVAGASILAGTAVTMLML--VVLNVFP-FTPRYIIPVAGMMVGNAMTV 145
             R  ++P  K    VA  S++AG+   +L+   V++   P + P+YI+P+ GM+VGNAMT 
Sbjct:    85 RV-NIPMSKELKQVAALSMVAGSIGPLLLFIFVIIGHDPWYAPQYIVPITGMLVGNAMTG 143

Query:   146 TGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISL 205
               +      +++K Q   +E AL LGATP++AT   ++ +   A+ P +++   +G+ISL
Sbjct:   144 VSLGANTFLNNMKSQRGQIEGALMLGATPKEATAPLIRDAFDSAILPTINSMVGMGIISL 203

Query:   206 PGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLE 260
             PG MTG I+ G SP  AIQ QI ++  + G++  + I+   L +  FF K  QL+
Sbjct:   204 PGMMTGQILSGVSPFTAIQYQIAIILGISGSTAFAVIIFLQLGYKTFFNKRCQLK 258

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60CD9 MCA0169 "Conserved hypothetical integral membrane protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 76/232 (32%), Positives = 136/232 (58%)

Query:    38 LGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVP 97
             L +  E+  SIVR  +QL+++G  L+++F  +     +L  + M++VA +T  +RA    
Sbjct:    30 LHLARELWLSIVRMSVQLALVGIYLKYLFEINAPALNVLWIVVMLVVADFTILRRAGLRI 89

Query:    98 RGKYVAG-ASILAGTA--VTMLMLVVLNVFP-FTPRYIIPVAGMMVGNAMTVTGVTMKRL 153
             R  +++  A+I+AGTA  V  L+L+V+   P +  RY++P+AGM++GN +    + ++R 
Sbjct:    90 RHFFLSTLAAIVAGTAFSVAYLLLLVIRPEPIYDARYLVPLAGMILGNCLQGNVIGLERF 149

Query:   154 RDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMI 213
                I+   N   T L LGAT R+A +   + +L  +++P L +  T+GL+SLPG MTG I
Sbjct:   150 YSAIRKNENEYLTYLLLGATRREAVRPYFREALKASVNPTLASMATLGLVSLPGMMTGQI 209

Query:   214 MGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESKVFR 265
             +GG+ P  A++ QI +M  +  + +++++++  L     F +   L   VFR
Sbjct:   210 LGGSEPWVAVKYQIAIMLCIFASMSLAAVLNLSLSLRFAFDEFGVLREAVFR 261

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47WS4 CPS_4093 "Putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 58/209 (27%), Positives = 108/209 (51%)

Query:    45 IYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF-MVIVAGYTAGQRAKHVPRGKYVA 103
             I+++ R  +QL ++GF L ++F  D+  W++L  L  MV  + + A    +  P+ +   
Sbjct:    38 IHALARMLVQLLLVGFFLSYVFESDS-AWLVLMLLIIMVFFSSWIALNNIE-APKCELFQ 95

Query:   104 GASI-LAGTAVTMLMLVVLNVFPFTPRY----IIPVAGMMVGNAMTVTGVTMKRLRDDIK 158
              A   ++ ++V  L+++   V   +P Y    +IP+AGM+  ++M    ++ +R   +  
Sbjct:    96 RAVFAISISSVLTLLIITQGVLQLSPWYHAQTLIPLAGMVFASSMNSISLSGERFYSE-- 153

Query:   159 IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGAS 218
                      LA   + +QA     + S++  ++ +L     VG++SLPG MTG I+ G S
Sbjct:   154 ---------LANKVSYKQARNIAFQASMIPNVNALL----AVGIVSLPGMMTGQILSGVS 200

Query:   219 PLEAIQLQIVVMNMLIGASTVSSIMSTYL 247
             P  A + QI+VM M+  ++ +SS    YL
Sbjct:   201 PFIAARYQIMVMCMIFASAGISSAYFLYL 229

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4093 CPS_4093 "putative membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 58/209 (27%), Positives = 108/209 (51%)

Query:    45 IYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF-MVIVAGYTAGQRAKHVPRGKYVA 103
             I+++ R  +QL ++GF L ++F  D+  W++L  L  MV  + + A    +  P+ +   
Sbjct:    38 IHALARMLVQLLLVGFFLSYVFESDS-AWLVLMLLIIMVFFSSWIALNNIE-APKCELFQ 95

Query:   104 GASI-LAGTAVTMLMLVVLNVFPFTPRY----IIPVAGMMVGNAMTVTGVTMKRLRDDIK 158
              A   ++ ++V  L+++   V   +P Y    +IP+AGM+  ++M    ++ +R   +  
Sbjct:    96 RAVFAISISSVLTLLIITQGVLQLSPWYHAQTLIPLAGMVFASSMNSISLSGERFYSE-- 153

Query:   159 IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGAS 218
                      LA   + +QA     + S++  ++ +L     VG++SLPG MTG I+ G S
Sbjct:   154 ---------LANKVSYKQARNIAFQASMIPNVNALL----AVGIVSLPGMMTGQILSGVS 200

Query:   219 PLEAIQLQIVVMNMLIGASTVSSIMSTYL 247
             P  A + QI+VM M+  ++ +SS    YL
Sbjct:   201 PFIAARYQIMVMCMIFASAGISSAYFLYL 229

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W7C1	STAR2_ORYSJ	No assigned EC number	0.7898	0.9625	0.9017	yes	no
Q58348	Y938_METJA	No assigned EC number	0.3362	0.8239	0.88	yes	no
Q9ZUT3	ALS3_ARATH	No assigned EC number	0.8212	0.9850	0.9633	yes	no
O34684	YJKA_BACSU	No assigned EC number	0.3248	0.8876	0.948	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
COG0390	256	COG0390, COG0390, ABC-type uncharacterized transpo	9e-59
TIGR00245	248	TIGR00245, TIGR00245, TIGR00245 family protein	1e-51
pfam03649	250	pfam03649, UPF0014, Uncharacterized protein family	1e-48

>gnl|CDD|223467 COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]

 Score =  187 bits (476), Expect = 9e-59
 Identities = 90/235 (38%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 26  VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVA 85
           V++A+L+S  + LG+E +++ + +R  +QL ++GFVL +IF+ DN    +L  L M+ +A
Sbjct: 18  VVVAILISHKEGLGLEKDILVASIRTVVQLLILGFVLSYIFALDNPALTLLMVLVMLTIA 77

Query: 86  GYTAGQRAKHVPRGKYVAG-ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMT 144
            Y A +R        ++    +I   T V +L+LV+     F PRY+IP+AGM++GN M 
Sbjct: 78  AYNARKRLSKKILKLFILVFLAIFVSTLVYLLVLVLRGRIWFEPRYVIPIAGMILGNTMV 137

Query: 145 VTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLIS 204
              +  +RL  +I  + + +E  L+LGATP++A++  ++ ++  AL P +++ KTVGL+S
Sbjct: 138 GVSLAYERLVSEIISEKDEIEAKLSLGATPKEASRPYIRSAIRAALIPTINSMKTVGLVS 197

Query: 205 LPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 259
           LPG MTG+I+ G  PL AI+ QIV+M +L+ ++ +S+I++ YL + AFF +A+QL
Sbjct: 198 LPGMMTGLILAGVDPLTAIRYQIVIMFLLLASAALSTIIAAYLAYRAFFNRAHQL 252

Length = 256

>gnl|CDD|232893 TIGR00245, TIGR00245, TIGR00245 family protein

 Score =  168 bits (428), Expect = 1e-51
 Identities = 83/236 (35%), Positives = 147/236 (62%), Gaps = 2/236 (0%)

Query: 26  VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRG--WIILAYLFMVI 83
           V++A+LLS+ +KLG+E +++++ +RA +QL ++G+VL +IFS D  G   ++L  L +  
Sbjct: 13  VIIAILLSYREKLGLEKDILWASIRAIIQLIIVGYVLLYIFSFDMPGAFLMLLMMLTIAA 72

Query: 84  VAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAM 143
           VA      R+K+     + +  +    T VT+ +L++  V  F P Y+IP+ GM++GN M
Sbjct: 73  VAAMNEINRSKNKTGLFWCSFIAFTTTTIVTLAVLIIPKVIKFEPIYVIPLMGMVIGNTM 132

Query: 144 TVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLI 203
               + + RL   +K + + ++  L+LGATP+QA    ++ ++  +L P +++ KTVGL+
Sbjct: 133 NTISLALNRLISMVKSERDEIQGYLSLGATPKQAIAPFIRNAIKASLIPTVNSTKTVGLV 192

Query: 204 SLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 259
           SLPG MTG I+ GA P+ A + QI++M M++ ++ +S+I+  YL +   F    QL
Sbjct: 193 SLPGMMTGQILAGADPIYAAEYQILIMFMILSSAVLSTIIICYLTYREIFNAHQQL 248

[Hypothetical proteins, Conserved]. Length = 248

>gnl|CDD|112466 pfam03649, UPF0014, Uncharacterized protein family (UPF0014)

 Score =  161 bits (408), Expect = 1e-48
 Identities = 79/234 (33%), Positives = 142/234 (60%), Gaps = 2/234 (0%)

Query: 22  ATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFM 81
           A  +V++A+L+++ +KLG+E ++++   RA +QL ++G+VL +IFS DN    +L    M
Sbjct: 15  ALILVIIAILIAYREKLGLEKKILWVSGRAIIQLIIVGYVLLYIFSFDNMVGALLMIGVM 74

Query: 82  VIVAGYTAGQRAKHVPRGKYVA--GASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV 139
           + +A Y A +R     + K       +  A T +++ +L++  V  F P Y+IP+ GM++
Sbjct: 75  ITLAAYLAMRRINLKNKTKLFICLFITFGATTIISLAVLIIPKVVKFEPIYVIPLMGMII 134

Query: 140 GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKT 199
           GN M    + + +L D +K + +++   LALGATP QA    ++ ++  AL P ++  K+
Sbjct: 135 GNTMNTIHLALDKLIDMVKSERDIIWGYLALGATPIQALAPFIRNAIRAALIPTVNRTKS 194

Query: 200 VGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFF 253
           VGL+SLPG M GM++ GA P+ A + QI++M M++  + +S+I+  YL +    
Sbjct: 195 VGLVSLPGMMVGMLLAGADPIYAAEYQIIIMFMILSTAVLSTILICYLMYREII 248

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
TIGR00245	248	conserved hypothetical protein TIGR00245.	100.0
PF03649	250	UPF0014: Uncharacterised protein family (UPF0014);	100.0
COG0390	256	ABC-type uncharacterized transport system, permeas	100.0
PRK11122	222	artM arginine transporter permease subunit ArtM; P	96.06
COG0765	222	HisM ABC-type amino acid transport system, permeas	96.05
PRK09494	219	glnP glutamine ABC transporter permease protein; R	95.29
TIGR02789	314	nickel_nikB nickel ABC transporter, permease subun	94.99
PRK10782	217	DL-methionine transporter permease subunit; Provis	94.58
PRK10417	272	nikC nickel transporter permease NikC; Provisional	94.48
PRK15100	220	amino acid ABC transporter permease; Provisional	94.29
PRK15135	228	histidine/lysine/arginine/ornithine ABC transporte	93.67
CHL00187	237	cysT sulfate transport protein; Provisional	93.56
PRK10352	314	nickel transporter permease NikB; Provisional	93.38
PRK09471	306	oppB oligopeptide transporter permease; Reviewed	93.2
TIGR03003	212	ectoine_ehuD ectoine/hydroxyectoine ABC transporte	93.12
PF02687	121	FtsX: FtsX-like permease family; InterPro: IPR0038	92.81
TIGR01097	250	PhnE phosphonate ABC transporter, permease protein	92.81
PRK15069	234	histidine/lysine/arginine/ornithine ABC transporte	92.39
TIGR02140	261	permease_CysW sulfate ABC transporter, permease pr	92.31
PRK09421	229	modB molybdate ABC transporter permease protein; R	91.83
PRK09433	525	thiP thiamine transporter membrane protein; Review	91.78
TIGR01581	225	Mo_ABC_porter NifC-like ABC-type porter. Included	91.3
TIGR03004	214	ectoine_ehuC ectoine/hydroxyectoine ABC transporte	90.75
PRK15107	224	glutamate/aspartate transport system permease GltK	90.44
COG4662	227	TupA ABC-type tungstate transport system, periplas	90.09
PRK15110	321	antimicrobial peptide ABC transporter permease Sap	89.22
TIGR02141	208	modB_ABC molybdate ABC transporter, permease prote	89.16
COG0601	317	DppB ABC-type dipeptide/oligopeptide/nickel transp	89.12
PRK13022	289	secF preprotein translocase subunit SecF; Reviewed	89.12
PRK09433	525	thiP thiamine transporter membrane protein; Review	88.74
COG1178	540	ThiP ABC-type Fe3+ transport system, permease comp	88.73
PRK05812	498	secD preprotein translocase subunit SecD; Reviewed	88.61
COG1177	267	PotC ABC-type spermidine/putrescine transport syst	87.84
PRK15133	364	microcin C ABC transporter permease YejB; Provisio	87.41
PRK12933	604	secD preprotein translocase subunit SecD; Reviewed	87.14
PRK11602	283	cysW sulfate/thiosulfate transporter permease subu	87.06
COG0581	292	PstA ABC-type phosphate transport system, permease	87.05
PRK15081	306	glutathione ABC transporter permease GsiC; Provisi	87.01
PRK09497	285	potB spermidine/putrescine ABC transporter membran	86.42
PRK13021	297	secF preprotein translocase subunit SecF; Reviewed	86.29
TIGR00966	246	3a0501s07 protein-export membrane protein SecF. Th	86.23
PRK11123	238	arginine transporter permease subunit ArtQ; Provis	85.6
TIGR03255	272	PhnV 2-aminoethylphosphonate ABC transport system,	85.4
TIGR02139	265	permease_CysT sulfate ABC transporter, permease pr	84.7
TIGR01253	519	thiP thiamine ABC transporter, permease protein. T	84.61
PF00528	185	BPD_transp_1: Binding-protein-dependent transport	84.53
PRK13024	755	bifunctional preprotein translocase subunit SecD/S	84.11
TIGR00439	309	ftsX putative protein insertion permease FtsX. Fts	83.89
PRK10914	339	dipeptide transporter permease DppB; Provisional	83.77
PRK09500	256	potC spermidine/putrescine ABC transporter membran	83.09
PRK11275	319	pstC phosphate transporter permease subunit PstC;	82.97
TIGR03262	546	PhnU2 putative 2-aminoethylphosphonate ABC transpo	82.97
PRK10999	520	malF maltose transporter membrane protein; Provisi	82.48
TIGR01185	380	devC DevC protein. This model describes a predicte	82.35
TIGR02790	258	nickel_nikC nickel ABC transporter, permease subun	82.1
PRK11026	309	ftsX cell division ABC transporter subunit FtsX; P	80.75
COG4208	287	CysW ABC-type sulfate transport system, permease c	80.65

>TIGR00245 conserved hypothetical protein TIGR00245

Probab=100.00  E-value=2.6e-77  Score=541.03  Aligned_cols=243  Identities=35%  Similarity=0.611  Sum_probs=227.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHhhhcC
Q 024490           17 IKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRG--WIILAYLFMVIVAGYTAGQRAK   94 (267)
Q Consensus        17 ~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~--~~~l~~l~M~~~As~~a~~R~~   94 (267)
                      .++..+++++++++.+++++|+|++||+++|++||++||.++||+|+|+|+.||+|  +++++.++|..+|++++.+|.+
T Consensus         4 ~~l~~~~~lv~~~~~i~~~~~lgl~k~l~iA~~R~~vQL~~vG~vL~~iF~~~~~~~~~~~l~ml~m~~~a~~~~~~r~~   83 (248)
T TIGR00245         4 ISLTLALIFVIIAILLSYREKLGLEKDILWASIRAIIQLIIVGYVLLYIFSFDMPGAFLMLLMMLTIAAVAAMNEINRSK   83 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45566778999999999999999999999999999999999999999999999999  6666667888889999988877


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCH
Q 024490           95 HVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATP  174 (267)
Q Consensus        95 ~~~~~~~~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~  174 (267)
                      +.++.++.++.++.+|+.+++.++++.+..||||||+||++||++||+||++++++|||++|+++|+||||++|+|||||
T Consensus        84 ~~~~~~~~~~~s~~~~~~~~l~~~vl~~~~~~~p~y~IPl~GMiiGNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~  163 (248)
T TIGR00245        84 NKTGLFWCSFIAFTTTTIVTLAVLIIPKVIKFEPIYVIPLMGMVIGNTMNTISLALNRLISMVKSERDEIQGYLSLGATP  163 (248)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH
Confidence            55655555778988999888887777777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024490          175 RQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFT  254 (267)
Q Consensus       175 ~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~  254 (267)
                      |||.+|++|+|+|+|++|++|+|+++|+|++|||||||||||+||++|+||||+||++|++++++|++++++++||++||
T Consensus       164 ~~A~~~~~r~Ai~aaliP~insm~~vGlV~LPGmMtGqIL~G~~Pl~Av~yQivIm~~i~~s~~ls~~~~~~l~~r~~f~  243 (248)
T TIGR00245       164 KQAIAPFIRNAIKASLIPTVNSTKTVGLVSLPGMMTGQILAGADPIYAAEYQILIMFMILSSAVLSTIIICYLTYREIFN  243 (248)
T ss_pred             HHHHHHHHHHHHHHHhhchHHhcchhheeechhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 024490          255 KAYQL  259 (267)
Q Consensus       255 ~~~qL  259 (267)
                      +++|+
T Consensus       244 ~~~ql  248 (248)
T TIGR00245       244 AHQQL  248 (248)
T ss_pred             HhhcC
Confidence            99996

>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function

Probab=100.00  E-value=2e-75  Score=529.36  Aligned_cols=240  Identities=40%  Similarity=0.731  Sum_probs=223.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 024490           16 MIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKH   95 (267)
Q Consensus        16 ~~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~~   95 (267)
                      ..++.++++++++++++++++|+|++||+++|++||++||.++|++|+|+|+.||+|++++++++|..+|++++.+|.|.
T Consensus         9 ~~~l~~a~~lv~i~~~is~~~~L~l~~~l~~a~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~~~M~~~As~~a~~r~~~   88 (250)
T PF03649_consen    9 WLQLALALLLVLIAIAISYRLRLGLERDLLIASLRMVVQLLLVGYVLHYIFKLNNPWLVILWLLVMILVASFTAARRAKL   88 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34555677799999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcchHHH--HHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 024490           96 VPRGKYVA--GASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGAT  173 (267)
Q Consensus        96 ~~~~~~~~--~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt  173 (267)
                      ++++++..  ++++..++.+++..+++.+..||||||+||++||++||+||++++++|||++|+++|+||||++|+||||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~v~l~~lvl~~~~~~~~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat  168 (250)
T PF03649_consen   89 RPKGLFFPVLALSLGAGTIVTLLLLVLRGAPWFDPRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGAT  168 (250)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Confidence            87766653  3455555556665666667778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024490          174 PRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFF  253 (267)
Q Consensus       174 ~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F  253 (267)
                      ||||.+|++|+|+|++++|++|+|+++|+|++|||||||||||+||++|++||++||+++++++.+|+++++++.||++|
T Consensus       169 ~~eA~~~~~r~ai~~al~P~i~~m~~vGlVslPGmMtG~IL~G~sP~~Av~yQi~Im~~i~as~~lss~~~~~l~~r~~f  248 (250)
T PF03649_consen  169 PREAVRPFIRRAIRAALIPTINSMKTVGLVSLPGMMTGQILGGASPLQAVRYQIVIMFMILASSSLSSVLATLLVYRRYF  248 (250)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHHhhhhhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc
Q 024490          254 TK  255 (267)
Q Consensus       254 ~~  255 (267)
                      |.
T Consensus       249 ~~  250 (250)
T PF03649_consen  249 NQ  250 (250)
T ss_pred             CC
Confidence            84

It includes potential membrane proteins.

>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=100.00  E-value=1.3e-74  Score=515.99  Aligned_cols=245  Identities=38%  Similarity=0.657  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhh-cCC
Q 024490           17 IKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQR-AKH   95 (267)
Q Consensus        17 ~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R-~~~   95 (267)
                      .++..+++|+++++++|+++|+|+|||++||+.|+++||+++||+|+|+|+.||+|.+++++++|..+|++++.|| .|+
T Consensus         9 ~~l~~a~~lv~iai~is~~egl~lEk~il~a~~RtvvQLli~GfvL~yIf~~~~~~~~ll~v~vm~~~Aa~~~~~rl~k~   88 (256)
T COG0390           9 LSLGLAYLLVVVAILISHKEGLGLEKDILVASIRTVVQLLILGFVLSYIFALDNPALTLLMVLVMLTIAAYNARKRLSKK   88 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3445577799999999999999999999999999999999999999999999999999999999999999999999 555


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHH
Q 024490           96 VPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPR  175 (267)
Q Consensus        96 ~~~~~~~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~  175 (267)
                      ..+.++..++++++++...+..+++.+..+|+|||+||++||++||+|++.+++.||+.+++.+++||+|+.|||||||+
T Consensus        89 ~~~~f~~~flai~~s~~~~~~vlv~~~~~~~~p~yvIPi~GMIlGNtm~~~~L~~~~l~~~i~~~~~eie~~LsLGaTp~  168 (256)
T COG0390          89 ILKLFILVFLAIFVSTLVYLLVLVLRGRIWFEPRYVIPIAGMILGNTMVGVSLAYERLVSEIISEKDEIEAKLSLGATPK  168 (256)
T ss_pred             hhhhHHHHHHHHHHHHhHhheeeEeccCCCCCCceeeehhhhhhcchhhhhhhHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence            55566667889988877777667777778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 024490          176 QATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTK  255 (267)
Q Consensus       176 eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~~  255 (267)
                      ||.+++.|+|+|+|++|++||||++|+|++||||||||++|+||++|+||||+|||++++++++|+.+++|++||.+||+
T Consensus       169 ~A~~~~~r~Air~aliPtins~k~vGlVslPGmmtG~ilAG~~Pl~Ai~yQIvImf~ll~s~~ls~ii~~yL~yr~~Fn~  248 (256)
T COG0390         169 EASRPYIRSAIRAALIPTINSMKTVGLVSLPGMMTGLILAGVDPLTAIRYQIVIMFLLLASAALSTIIAAYLAYRAFFNR  248 (256)
T ss_pred             HHHHHHHHHHHHHhhhccchhhheeceeecchHHHhhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 024490          256 AYQLES  261 (267)
Q Consensus       256 ~~qL~~  261 (267)
                      +|||..
T Consensus       249 ~~qLv~  254 (256)
T COG0390         249 AHQLVV  254 (256)
T ss_pred             HhhHhc
Confidence            999964

>PRK11122 artM arginine transporter permease subunit ArtM; Provisional

Probab=96.06  E-value=0.27  Score=43.35  Aligned_cols=59  Identities=15%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490          138 MVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN  196 (267)
Q Consensus       138 llGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~  196 (267)
                      ++.-+.+..+--.+.+.+++++ +++.+|++.+.|+|+||..+-.+.++++.++-|-.|+
T Consensus        95 ~~~l~l~~~~~~~~i~~~~l~~i~~~~~eaA~a~G~s~~q~~~I~lP~~l~~~l~~~~~~  154 (222)
T PRK11122         95 MLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNE  154 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHhHhhhhhHHHHHHHHhhHHHHH
Confidence            3444555666677788888875 5677999999999999998755678888888887333

>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]

Probab=96.05  E-value=0.13  Score=46.49  Aligned_cols=180  Identities=18%  Similarity=0.233  Sum_probs=105.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcCCCCcchHH-HHHHHHHHHH-HHHHHH
Q 024490           41 EGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYV-AGASILAGTA-VTMLML  118 (267)
Q Consensus        41 ~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~~~~~~~~~-~~~si~~~~~-~~l~~~  118 (267)
                      ..+.+......++.+.+.|.++..++.              +..|   ..|+.+.+.-++.. ..+.++=++= ++..++
T Consensus        14 ~~~~ll~G~~~TL~lt~~~~~~g~vlG--------------~~la---~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~   76 (222)
T COG0765          14 YLPFLLKGLLVTLLLTLLSIVLGLVLG--------------LLLA---LMRLSGNKPLRWLARAYVEIFRGTPLLVQLFF   76 (222)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH---HHHHCCcHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            345667777778888888888777764              0111   11333321111111 1223222211 112222


Q ss_pred             HHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhcccccc
Q 024490          119 VVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPVLDN  196 (267)
Q Consensus       119 ~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~~  196 (267)
                      +..+..|.-+-.+=|..--++|=++|.-+-..|-++++++. ++++.|++.|+|-|++|..+.++= ||+|..+=|..|+
T Consensus        77 ~yfg~lp~~g~~~~~~~aaiial~l~~~AY~aEi~R~GI~aVpkGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~  156 (222)
T COG0765          77 IYFGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQ  156 (222)
T ss_pred             HHHHhHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHhhHHHheehhhhHHHhhhHhHHH
Confidence            23333333334445577778888899999999999999965 889999999999999999999765 9999998888776


Q ss_pred             c----chhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 024490          197 A----KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTV  239 (267)
Q Consensus       197 m----~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~l  239 (267)
                      .    |...+++.=|..  -+..-+.-+++..||-.-.+.+.+.--+
T Consensus       157 ~i~liK~TSl~svIgv~--EL~~~a~~i~~~t~~~~e~~~~~a~iY~  201 (222)
T COG0765         157 FISLIKDTSLVSVIGVV--ELTRAAQIIAARTFRPFEVYLLAALIYL  201 (222)
T ss_pred             HHHHHHHhHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4    444444443321  1112223344445555555544444333

>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed

Probab=95.29  E-value=0.77  Score=40.49  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhccc
Q 024490          132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPV  193 (267)
Q Consensus       132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~  193 (267)
                      -|..+.+++-+.+...-..|-+++++++ +++.+|++.++|+|++|..+..+= ++++..+-|.
T Consensus        88 ~~~~~~il~l~l~~~~~~a~~~r~~~~sv~~~~~eAA~~lG~s~~q~~~~iilP~a~~~~~p~~  151 (219)
T PRK09494         88 DPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPL  151 (219)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHH
Confidence            3555566777777777777888888865 667799999999999999877755 4555444443

>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB

Probab=94.99  E-value=2.5  Score=39.48  Aligned_cols=41  Identities=17%  Similarity=0.240  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHH-HHHHHHHHH
Q 024490          148 VTMKRLRDDIK--IQLNLVETALALGATPRQATK-QQVKRSLVI  188 (267)
Q Consensus       148 lal~r~~~~l~--~~~~~ie~~LalGAt~~eA~~-~~~r~Ai~~  188 (267)
                      .-.+..+++..  .+++.+|++.+.|.|+++... ..+|+|+..
T Consensus       190 ~~~r~~R~~~~~~~~~~yv~~Ara~Gls~~~i~~~hiLpnal~~  233 (314)
T TIGR02789       190 IYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILP  233 (314)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHcCCCcceehHHHhHHhhHHH
Confidence            33444555543  367779999999999998754 444554443

This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.

>PRK10782 DL-methionine transporter permease subunit; Provisional

Probab=94.58  E-value=2.9  Score=36.50  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc--------ccccchhheee
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPV--------LDNAKTVGLIS  204 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~--------i~~m~~vGlVs  204 (267)
                      ..+.++.-+........+.+.+++++ +++.+|++.++|+|+++..+..+-+.....+.|.        +......|.+.
T Consensus        89 ~~~~il~l~l~~~~~~~~~~~~~l~~v~~~~~eaA~~~G~s~~~~~~~vilP~~~p~i~~~~~~~~~~~~~~t~l~~~ig  168 (217)
T PRK10782         89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG  168 (217)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34556666666666666666666655 5566899999999999998776444433333333        23335566777


Q ss_pred             chHHHHH
Q 024490          205 LPGAMTG  211 (267)
Q Consensus       205 lPGmMtG  211 (267)
                      .||+++=
T Consensus       169 ~~~lg~~  175 (217)
T PRK10782        169 AGGLGQI  175 (217)
T ss_pred             cchHHHH
Confidence            7777654

>PRK10417 nikC nickel transporter permease NikC; Provisional

Probab=94.48  E-value=3.1  Score=38.20  Aligned_cols=107  Identities=15%  Similarity=0.018  Sum_probs=53.0

Q ss_pred             HHHHHHHHH--hHHHHHHHHHCCCCHHHHHHH-HHHHHHHHhh------cc----cccccchhhee-echHHHHHHHHcC
Q 024490          151 KRLRDDIKI--QLNLVETALALGATPRQATKQ-QVKRSLVIAL------SP----VLDNAKTVGLI-SLPGAMTGMIMGG  216 (267)
Q Consensus       151 ~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~-~~r~Ai~~al------~P----~i~~m~~vGlV-slPGmMtGqILgG  216 (267)
                      +-.+++..+  +++-+|++.+.|+++++-... +++++...-+      +|    +..+++-.|+. .-|---+|.+++-
T Consensus       146 r~~r~~~~~~~~~~yv~aAra~G~s~~~i~~~hiLP~~~p~ii~~~~~~~~~~il~~a~LsflGlg~~~~~~~wG~mi~~  225 (272)
T PRK10417        146 RMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMIND  225 (272)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHcCCCchhhHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Confidence            334554433  567799999999999987653 3333332111      11    12445566665 3455566777765


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Q 024490          217 ASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAY  257 (267)
Q Consensus       217 ~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~~~~  257 (267)
                      +..........++.=.++-...+-++-.+--+.|+.+|++.
T Consensus       226 ~~~~~~~~~w~~~~P~~~i~~~~~~~~l~g~~l~~~~~p~~  266 (272)
T PRK10417        226 ARQYIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHL  266 (272)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            54432222222222122212222222222344577777653

>PRK15100 amino acid ABC transporter permease; Provisional

Probab=94.29  E-value=2.9  Score=36.91  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc
Q 024490          132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPV  193 (267)
Q Consensus       132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~  193 (267)
                      -|..+.+++-.++...-..+-+++++++ +++.+|++.++|+|++|..+.++=......+.|.
T Consensus        86 ~~~~~~i~~l~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~VilP~~~p~~~~~  148 (220)
T PRK15100         86 DPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPP  148 (220)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777888777778888888866 5567999999999999999887776666666663

>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional

Probab=93.67  E-value=4.6  Score=35.51  Aligned_cols=59  Identities=24%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             HHHHHHHHHH-HhHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhccccc----ccchhheeechH
Q 024490          149 TMKRLRDDIK-IQLNLVETALALGATPRQATKQQVK-RSLVIALSPVLD----NAKTVGLISLPG  207 (267)
Q Consensus       149 al~r~~~~l~-~~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~----~m~~vGlVslPG  207 (267)
                      -.|-++++++ .+++.+|++.++|+|+||..+..+= ++.+.++-+..|    ..|...+++.-|
T Consensus       108 ~~~~~r~~l~~v~~~~ieaA~~lG~s~~~i~~~vilP~~~~~~~p~~~~~~i~~ik~~sl~s~ig  172 (228)
T PRK15135        108 FTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLG  172 (228)
T ss_pred             HHHHHHHHHhcCCHhHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3455556543 3678899999999999999876655 445544444433    234444444443

>CHL00187 cysT sulfate transport protein; Provisional

Probab=93.56  E-value=4.8  Score=35.75  Aligned_cols=49  Identities=18%  Similarity=0.284  Sum_probs=39.5

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHH
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQV  182 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~  182 (267)
                      ..|++++.+........+.+++.+++ +++.+|++..+|+|++|..+.++
T Consensus       137 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~ii  186 (237)
T CHL00187        137 KLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVI  186 (237)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCChheeeeeee
Confidence            45788888888888888888887766 66779999999999998765443

>PRK10352 nickel transporter permease NikB; Provisional

Probab=93.38  E-value=7.1  Score=36.76  Aligned_cols=36  Identities=22%  Similarity=0.173  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 024490          160 QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAK  198 (267)
Q Consensus       160 ~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~  198 (267)
                      ++|-++++.+.|.++++-..   |.++|.++.|.+..+.
T Consensus       204 ~~dyV~~ArakGl~~~~I~~---~H~lrnal~piit~~~  239 (314)
T PRK10352        204 GQRHVTWARLRGLSERQVER---RHILRNASLPMITAVG  239 (314)
T ss_pred             chHHHHHHHHcCCCcceehH---HhhHHhhHHHHHHHHH
Confidence            55679999999999986543   4566667788776443

>PRK09471 oppB oligopeptide transporter permease; Reviewed

Probab=93.20  E-value=5.7  Score=37.03  Aligned_cols=35  Identities=34%  Similarity=0.431  Sum_probs=26.2

Q ss_pred             HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490          159 IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN  196 (267)
Q Consensus       159 ~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~  196 (267)
                      .++|-+|++.+.|.++|+-   +.|..++.++.|.+..
T Consensus       201 ~~~~yv~~Ara~G~s~~~i---~~~hil~na~~p~it~  235 (306)
T PRK09471        201 LHSNFIRTARAKGLPMRRI---ILRHALKPALLPVLSY  235 (306)
T ss_pred             HcCHHHHHHHHcCCCccee---hHHHhHHhhHHHHHHH
Confidence            3667799999999999854   2455666788888754

>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD

Probab=93.12  E-value=5.4  Score=34.63  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc-cccccc-------hhheeechHHH-HH
Q 024490          142 AMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP-VLDNAK-------TVGLISLPGAM-TG  211 (267)
Q Consensus       142 sm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P-~i~~m~-------~vGlVslPGmM-tG  211 (267)
                      ++...+...+.+.+++++ +++.+|++.++|+|++|..+.++-......++| ..|+..       .+..+..+.++ .+
T Consensus        94 ~l~~~~~~~~~~r~~l~~v~~~~~eaA~alG~s~~~~~~~iilP~a~~~il~~~~~~~~~~~k~t~~~~~i~~~e~~~~~  173 (212)
T TIGR03003        94 GLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQA  173 (212)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            334444444555555543 667899999999999999876655444444444 444433       23444455544 34


Q ss_pred             HHHcC
Q 024490          212 MIMGG  216 (267)
Q Consensus       212 qILgG  216 (267)
                      |-++.
T Consensus       174 ~~i~~  178 (212)
T TIGR03003       174 KSIGN  178 (212)
T ss_pred             HHHHH
Confidence            55554

Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.

>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins

Probab=92.81  E-value=1.1  Score=34.27  Aligned_cols=48  Identities=27%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490          149 TMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN  196 (267)
Q Consensus       149 al~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~  196 (267)
                      -..-.....++|++|+..+.++|+|++|-.+.+..|.+-.++.+.+-.
T Consensus        15 ~~~~~~~~~~~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g   62 (121)
T PF02687_consen   15 LFNIISSSIRERRREIAILRALGASKRQIRKMFLYEALLIALIGILIG   62 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHH
Confidence            345567778899999999999999999999999999888777665543

P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane

>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE

Probab=92.81  E-value=6.8  Score=35.00  Aligned_cols=69  Identities=22%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc--------cccccchhheeechHH
Q 024490          140 GNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP--------VLDNAKTVGLISLPGA  208 (267)
Q Consensus       140 GNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P--------~i~~m~~vGlVslPGm  208 (267)
                      .-+..+..-..+-+.+.+++ +++.+|++.+.|+|++|.....+=..++..+..        .+..-..+|++..+|.
T Consensus       132 ~i~i~~~~~~~~~~~~~l~~i~~~~~eaa~~~Gas~~q~~~~iilP~~~p~i~~~~~~~f~~~i~~~~~l~~vg~ggi  209 (250)
T TIGR01097       132 ALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGI  209 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHcCCCHHHHhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence            33444555556666677755 556699999999999999988777777777666        5555566677766653

Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).

>PRK15069 histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional

Probab=92.39  E-value=8  Score=34.75  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhcccccc-------cchhhe
Q 024490          132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPVLDN-------AKTVGL  202 (267)
Q Consensus       132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~~-------m~~vGl  202 (267)
                      -|....+++-+.+..+-..|-+++++++ ++++.|++.++|+|++|..+.++= ++++.++=|..|+       .+-+-.
T Consensus       100 ~~~~~~ii~l~l~~~~~~~e~~r~g~~~v~~~~~EaA~~lG~s~~q~~~~IilP~a~~~~lP~l~n~~i~l~K~tsl~~~  179 (234)
T PRK15069        100 SGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT  179 (234)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3566667777888888888999999976 778899999999999999988766 4445444443332       333334


Q ss_pred             eechHHH-HHHHHcC
Q 024490          203 ISLPGAM-TGMIMGG  216 (267)
Q Consensus       203 VslPGmM-tGqILgG  216 (267)
                      ++.|-+| .+|..+.
T Consensus       180 i~v~El~~~a~~~~~  194 (234)
T PRK15069        180 ATVPDILKIARDINS  194 (234)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            7777766 4444443

>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW

Probab=92.31  E-value=1.4  Score=39.57  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=42.5

Q ss_pred             hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHh
Q 024490          133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIA  189 (267)
Q Consensus       133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~a  189 (267)
                      ...|+++++......-+.+-+++.+++ +++.+|++..+|+|++|..+    |..|.++-++
T Consensus       128 ~~~~vil~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~I~lP~~~p~i~~~  189 (261)
T TIGR02140       128 SLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLYG  189 (261)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHhcCCCcceeeeeeehhcchHHHHHH
Confidence            356789999888777777777777755 56668999999999999874    4455555444

This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.

>PRK09421 modB molybdate ABC transporter permease protein; Reviewed

Probab=91.83  E-value=8.4  Score=33.82  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=39.9

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRS  185 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~A  185 (267)
                      ..|.+++..........+..++.+++ +++.+|++..+|+++||....+.=..
T Consensus        92 ~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~G~s~~~~~~~I~lP~  144 (229)
T PRK09421         92 WRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPL  144 (229)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCChhhhhhhhhhHh
Confidence            34566777777777777788888866 77889999999999999877554433

>PRK09433 thiP thiamine transporter membrane protein; Reviewed

Probab=91.78  E-value=13  Score=36.98  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=42.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV  187 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~  187 (267)
                      ..++++.+.......+..-+.+.+++ +++..|++..+||+++|....+.-..++
T Consensus       395 ~~~lil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~~~~I~lPll~  449 (525)
T PRK09433        395 LGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALR  449 (525)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHcCCchhhHHHHhhHHhhh
Confidence            45688888888888888888888877 4555899999999999988755444333

>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter

Probab=91.30  E-value=2.9  Score=36.45  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP  192 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P  192 (267)
                      ..+++++.+.....-....+++.+++ +++.+|++..+|+++||..+.+.-+..+.++..
T Consensus       103 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~v~lP~~~p~i~~  162 (225)
T TIGR01581       103 TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLA  162 (225)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHhhHHHHHH
Confidence            34677777777777676777777765 667799999999999999877766655544443

Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.

>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC

Probab=90.75  E-value=11  Score=33.12  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=40.3

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc
Q 024490          138 MVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL  194 (267)
Q Consensus       138 llGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i  194 (267)
                      ++.-+.+......+-+.+++++ +++++|++.++|+|++|..+.++=......++|.+
T Consensus        84 ii~l~~~~~~~~~~~~r~~l~~v~~~~~eAA~~~G~s~~q~~~~vilP~a~p~il~~~  141 (214)
T TIGR03004        84 VMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAF  141 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcCHHHHHHHHhHHHhHHHHHHHH
Confidence            3334444445555667777755 56668999999999999998877766666666654

Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.

>PRK15107 glutamate/aspartate transport system permease GltK; Provisional

Probab=90.44  E-value=12  Score=32.89  Aligned_cols=59  Identities=27%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc
Q 024490          136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL  194 (267)
Q Consensus       136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i  194 (267)
                      ..++.-.........+-+++++++ +++.+|++.++|+|+||..+.+.-..++..+.|.+
T Consensus        99 ~~i~~~~~~~~~~~~~~~~~~l~~i~~~~~EAA~~~Gas~~~~~~~I~lP~~~~~i~~~~  158 (224)
T PRK15107         99 SAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLL  158 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCCHHHHhhhhhHhhhHHHHhHHH
Confidence            444555555555566777788865 56679999999999999999999888888888875

>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]

Probab=90.09  E-value=14  Score=33.22  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             HHHHHhccCCC-CccchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 024490          116 LMLVVLNVFPF-TPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSL  186 (267)
Q Consensus       116 ~~~~~~~~~~~-~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai  186 (267)
                      .++++++..|+ +=+-+-...||++|.+.-..-+-..-+.+.+++ ++..-|..-++|+|+-+-...++|++=
T Consensus        80 LylLlSr~GPlG~f~LLfT~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Ear  152 (227)
T COG4662          80 LYLLLSRSGPLGWFNLLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFREAR  152 (227)
T ss_pred             HHHHHhccCCCccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            44567788885 567777889999999998887777777777765 445579999999999988888888763

>PRK15110 antimicrobial peptide ABC transporter permease SapB; Provisional

Probab=89.22  E-value=17  Score=34.13  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 024490          149 TMKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAK  198 (267)
Q Consensus       149 al~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~  198 (267)
                      ..+-.+++..+  ++|-+|++.+.|.++++-..   |-.++.++.|.+..+.
T Consensus       198 ~~r~~R~~~l~~~~~~yV~~Ara~G~s~~~i~~---rhilpnal~piit~~~  246 (321)
T PRK15110        198 VIRLMRISTIEVYDQNYVKAAATRGLSRFTILR---RHVLHNALPPVIPRLG  246 (321)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHcCCChhHhhH---HHhHHhhHHHHHHHHH
Confidence            33444444433  45669999999999997654   4456667777776543

>TIGR02141 modB_ABC molybdate ABC transporter, permease protein

Probab=89.16  E-value=8.2  Score=32.98  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=39.3

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490          135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV  187 (267)
Q Consensus       135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~  187 (267)
                      .+.++.++..........+++.+++ ++|.+|++.+.|++++|-.+.+.-+.++
T Consensus        81 ~~~ii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~  134 (208)
T TIGR02141        81 AGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASEIQTFLKVTLPLAF  134 (208)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCCHHHHHHHHHcCCCccchhhhhhHHhhh
Confidence            4567777777777777777777766 6778999999999999877655444333

Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model.

>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=89.12  E-value=13  Score=35.23  Aligned_cols=61  Identities=25%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             cchhhhhhHHhhhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490          129 RYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN  196 (267)
Q Consensus       129 ry~IPi~GMllGNsm~a~slal~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~  196 (267)
                      +++.|+.-..+.+.- ..+   +..++++.+  ++|-++++.+-|.++++-..   |-++|.|++|.+..
T Consensus       182 h~iLP~~~L~~~~~a-~~~---r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~---~H~lrNaliP~it~  244 (317)
T COG0601         182 HLILPALTLGLVSLA-GIA---RLTRSSMLEVLNQDYVRTARAKGLSERRILF---KHALRNALLPVITV  244 (317)
T ss_pred             HHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHHHHHHHHCCCCcceehH---HhhhHhhHHHHHHH
Confidence            556777665554432 222   333333322  44669999999999986654   56888999999853

>PRK13022 secF preprotein translocase subunit SecF; Reviewed

Probab=89.12  E-value=2.4  Score=39.55  Aligned_cols=123  Identities=18%  Similarity=0.236  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhH--HhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490          103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGM--MVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GM--llGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~  180 (267)
                      +.+++......++..+.+.| .|++.   .-++|+  ++|=+.+...+-.||++++.++++         |.+.+|+   
T Consensus       156 ~ilal~~~v~~~lg~~~l~g-~~l~~---~siaall~liG~sVnd~Ivv~drire~~~~~~---------~~~~~~a---  219 (289)
T PRK13022        156 AIIALLHDVIITLGIFSLFQ-IEFDL---TVIAALLTIIGYSLNDTVVVFDRIRENFRKIR---------RKTFAEI---  219 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CcccH---HHHHHHHHHHHHheeceEEEeeHHHHHHhhcc---------CCCHHHH---
Confidence            34455555555555555544 34442   223333  347777777778899988876541         2344444   


Q ss_pred             HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024490          181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW  249 (267)
Q Consensus       181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~  249 (267)
                       +++|++..+.|++++.-|.-+..+|=+..     |.+++.-.  -+.+++.++++...|.+++--+.+
T Consensus       220 -v~~a~~~~~~~~l~TslTTl~~~l~L~~~-----g~~~i~~f--a~~l~~Gli~~~~~sl~i~p~l~~  280 (289)
T PRK13022        220 -INLSINQTLSRTIITSLTTLLVVLALYLF-----GGGTLHDF--ALALLIGIIVGTYSSIFVASPLLL  280 (289)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46777778889999999999999996543     44554443  355666777776666666555443

>PRK09433 thiP thiamine transporter membrane protein; Reviewed

Probab=88.74  E-value=27  Score=34.79  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=44.8

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH----HHHHHHHhh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ----VKRSLVIAL  190 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~----~r~Ai~~al  190 (267)
                      ..|++++++.........-+.+.+++ +++.+|++..+||++||..+.+    +|.++-.+.
T Consensus       129 ~~~iii~~~~~~~P~~~l~~~~~l~~i~~~l~EAA~~lGa~~~~~f~~I~lPll~p~i~~~~  190 (525)
T PRK09433        129 LQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVA  190 (525)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHcCCHhHHHHHHHCCCcHhHHHHHhhHHhhHHHHHHHH
Confidence            46899999999988888888888876 5666899999999999987754    555554443

>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]

Probab=88.73  E-value=30  Score=35.19  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             hhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHh
Q 024490          131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIA  189 (267)
Q Consensus       131 ~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~a  189 (267)
                      +-...|.++.+.+.-.=.+..-..+.+++ +.+..|++..+||++||..+    |..|.++-++
T Consensus       137 iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~  200 (540)
T COG1178         137 IYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAG  200 (540)
T ss_pred             cccHHHHHHHHHHHhccHHHHHHHHHHHhCChhHHHHHHHcCCChhhHHHHhhHHhhhHHHHHH
Confidence            77889999999999999999999999966 66779999999999999877    6667766654

>PRK05812 secD preprotein translocase subunit SecD; Reviewed

Probab=88.61  E-value=2.7  Score=42.30  Aligned_cols=90  Identities=21%  Similarity=0.361  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490          103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~  180 (267)
                      +.+++....+.++..+.+.|. ++   .+.-++|+++  |=+.+.+.+-.||+++++++           |.++++|.  
T Consensus       361 a~iaL~~~v~~~l~~~~l~g~-~l---~l~siaGlil~iG~~VD~~IVI~ErIreel~~-----------g~~~~~Ai--  423 (498)
T PRK05812        361 ANIALVANLVLILAVLSLLGA-TL---TLPGIAGIVLTIGMAVDANVLIFERIREELRE-----------GRSLRSAI--  423 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC-Cc---hHHHHHHHHHhheeEEeceEEEeHHHHHHHHc-----------CCCHHHHH--
Confidence            445566666666655555552 22   3455677554  78888888899999998864           34555554  


Q ss_pred             HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490          181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG  211 (267)
Q Consensus       181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG  211 (267)
                        +++.+.+..|.+++..|.-+..+|=.+.|
T Consensus       424 --~~~~~~~~~~Il~s~lTTlia~l~L~~~g  452 (498)
T PRK05812        424 --EAGFKRAFSTILDSNITTLIAAIILYALG  452 (498)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              56667777899999999999999977654

>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]

Probab=87.84  E-value=23  Score=32.87  Aligned_cols=98  Identities=16%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHhhcc----cccc------c
Q 024490          133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIALSP----VLDN------A  197 (267)
Q Consensus       133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~al~P----~i~~------m  197 (267)
                      ...+.++|+..-+.--...-....+++ +++..|++..||||++|+.+    |.++.++-++.+=    ++|.      +
T Consensus       134 ~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~LeeAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~  213 (267)
T COG1177         134 GFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFL  213 (267)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHhCChHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhHHHhhhee
Confidence            356889999999888888888888866 56789999999999999876    4555555554332    1221      2


Q ss_pred             chhheeechHHHHHHHHcCCCHHHHHHHHHHHH
Q 024490          198 KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVM  230 (267)
Q Consensus       198 ~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im  230 (267)
                      ..-|--|+|=-|.+++=.|.+|..++--=+++.
T Consensus       214 ~gp~~~TLP~~i~s~~r~~~~p~i~Alstll~~  246 (267)
T COG1177         214 AGPGFTTLPLQIYSMIRRGITPEINALSTLLLL  246 (267)
T ss_pred             cCCCCCchHHHHHHHhhcCCChHHHHHHHHHHH
Confidence            233688999999999999999999886555444

>PRK15133 microcin C ABC transporter permease YejB; Provisional

Probab=87.41  E-value=14  Score=35.65  Aligned_cols=35  Identities=23%  Similarity=0.152  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc
Q 024490          160 QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA  197 (267)
Q Consensus       160 ~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m  197 (267)
                      ++|-++++.+.|.++++-.   .|-++|.++.|.+..+
T Consensus       256 ~~dYV~~ArakGls~~~I~---~rH~LrNal~Piit~~  290 (364)
T PRK15133        256 RKQYVVTARAKGVSEKNIL---WKHVFRNAMLLVIAGF  290 (364)
T ss_pred             cchHHHHHHHcCCCcceeh---HHhhHHhhHHHHHHHH
Confidence            4567999999999998654   3557777888988765

>PRK12933 secD preprotein translocase subunit SecD; Reviewed

Probab=87.14  E-value=4.4  Score=41.82  Aligned_cols=89  Identities=19%  Similarity=0.304  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHh-ccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490          104 GASILAGTAVTMLMLVVL-NVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       104 ~~si~~~~~~~l~~~~~~-~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~  180 (267)
                      .+++....++++.++.+. |..    -.+.-++|+++  |-+..++.+-.||.++++++           |-++++|   
T Consensus       469 ~iAL~~~l~l~l~vmsll~G~t----LtLpgIAGiILtIGmaVDanIVI~ERIrEel~~-----------G~s~~~A---  530 (604)
T PRK12933        469 NVALIANMVCLFGLLALIPGAV----LTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE-----------GRSFAQA---  530 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc----ccHHHHHHHHHHHHhhccCcEEEehHHHHHHHc-----------CCCHHHH---
Confidence            344444444444444443 321    24557888887  88889999999999999864           4466666   


Q ss_pred             HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490          181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG  211 (267)
Q Consensus       181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG  211 (267)
                       ++++.+.+..|.+|+.-|.-++.+|=.+.|
T Consensus       531 -i~~G~~~a~~~IldanlTTlia~lpL~~~G  560 (604)
T PRK12933        531 -IDTGFDSAFSTIFDANFTTMITAVVLYSIG  560 (604)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             456667788899999999999999977654

>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional

Probab=87.06  E-value=24  Score=32.21  Aligned_cols=57  Identities=18%  Similarity=0.227  Sum_probs=38.0

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHHhh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVIAL  190 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~al  190 (267)
                      ..|++++.......-...-+.+.+++ +++.+|++..+|||++|....    ..|.++-++.
T Consensus       146 ~~~vil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~lGas~~~~~~~I~lP~l~p~i~~~~  207 (283)
T PRK11602        146 WPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGV  207 (283)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhCCccHHHHHHhCCCChhhhhhheeHHhhhHHHHHHH
Confidence            35677777666665555555555533 556799999999999998765    4555544443

>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]

Probab=87.05  E-value=0.9  Score=42.77  Aligned_cols=36  Identities=44%  Similarity=0.603  Sum_probs=29.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHc
Q 024490          162 NLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMG  215 (267)
Q Consensus       162 ~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILg  215 (267)
                      +.=|+.++||+|.||....++-.+                  ..||+.||-||+
T Consensus       173 ~~ReAs~aLGasKwqtI~~vvlP~------------------A~pGIiTGviLa  208 (292)
T COG0581         173 SLREAAYALGATKWQTIFKVVLPA------------------ALPGIITGVILA  208 (292)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHh------------------hHhHHHHHHHHH
Confidence            345899999999999988876653                  468899998875

>PRK15081 glutathione ABC transporter permease GsiC; Provisional

Probab=87.01  E-value=19  Score=33.81  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             cchhhhhhHHhhhhHHHHHHHHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490          129 RYIIPVAGMMVGNAMTVTGVTMKRLRDDIK--IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN  196 (267)
Q Consensus       129 ry~IPi~GMllGNsm~a~slal~r~~~~l~--~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~  196 (267)
                      +++.|+.-+.++...    .-.+-.++++.  .++|-++++.+.|.++++-..   |..++.++.|.+..
T Consensus       172 ~~~LP~l~l~l~~~~----~~~r~~R~~~~~~~~~dYV~~ArakGls~~~I~~---rhilrnal~piit~  234 (306)
T PRK15081        172 HYILPSLTLGAAVAA----VMARFTRASFVEVLSEDYMRTARAKGVSETWVVL---KHGLRNAMIPVVTM  234 (306)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccHHHHHHHHcCcCcchhhH---HHhHHhhHHHHHHH
Confidence            345666666665542    22233333443  355669999999999987653   44566677777664

>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed

Probab=86.42  E-value=25  Score=31.98  Aligned_cols=50  Identities=20%  Similarity=0.216  Sum_probs=40.0

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHH
Q 024490          135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKR  184 (267)
Q Consensus       135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~  184 (267)
                      .|++++...........-+++.+++ +++.+|++...||++||....+.-.
T Consensus       151 ~~vil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP  201 (285)
T PRK09497        151 SAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIP  201 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHhhHH
Confidence            4788888888878888888888877 6667899999999999987754433

>PRK13021 secF preprotein translocase subunit SecF; Reviewed

Probab=86.29  E-value=5.4  Score=37.58  Aligned_cols=124  Identities=14%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhh--HHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490          103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAG--MMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~G--MllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~  180 (267)
                      +.+++......++..+.+.+ .|++.-   -++|  +++|=+.|...+-.||.+++.+++         -|.+.+|+   
T Consensus       155 al~al~~dv~~~l~~l~l~g-~~l~~~---~iaglLtliG~svnd~IVi~drire~~~~~---------~~~~~~e~---  218 (297)
T PRK13021        155 ALFALVHDVIFVLAFFALTQ-MEFNLT---VLAAVLAILGYSLNDSIIIADRIRELLIAK---------PKLAIQEI---  218 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCccHH---HHHHHHHHHHHeeeCCEEEeeHHHHHHHhc---------cCCCHHHH---
Confidence            34566555555555555544 344422   2233  245666777777788888776532         13444444   


Q ss_pred             HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024490          181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWP  250 (267)
Q Consensus       181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r  250 (267)
                       +++|+++.+-|++.+.-|.-+..+|=+..     |.+.+.-..  +.++..+..++..|.+++.-+...
T Consensus       219 -i~~ai~~~lrr~l~TslTt~l~llpL~l~-----G~~~~~~fA--~~li~Gli~gt~sslfva~pl~~~  280 (297)
T PRK13021        219 -NNQAIVATFSRTMVTSGTTLMTVGALWIM-----GGGPLEGFS--IAMFIGILTGTFSSISVGTSLPEL  280 (297)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46777778888888777777777776553     666665443  677888888888888887766543

>TIGR00966 3a0501s07 protein-export membrane protein SecF

Probab=86.23  E-value=3.2  Score=37.68  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHH
Q 024490          102 VAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATK  179 (267)
Q Consensus       102 ~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~  179 (267)
                      .+.+++..+.+.++..+.+.| .|++   ..-++|+++  |-+.+...+-.||++++++++         -|.+++||. 
T Consensus       126 ~v~~~ip~~l~~~~~~l~~~g-~~ln---~~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~---------~~~~~~~a~-  191 (246)
T TIGR00966       126 GAIVALVHDVIITVGVYSLFG-IEVN---LTTVAALLTIIGYSINDTVVVFDRIRENLRKY---------TRKTFTEVI-  191 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-Cccc---HHHHHHHHHHHHHhccCeEEEehHHHHHHhhc---------cCCCHHHHH-
Confidence            344555555555555554444 2333   344455544  666666667778888776532         134666555 


Q ss_pred             HHHHHHHHHhhcccccccchhheeechHHHH
Q 024490          180 QQVKRSLVIALSPVLDNAKTVGLISLPGAMT  210 (267)
Q Consensus       180 ~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt  210 (267)
                         ++|.+..+.|.+.+.-++-++.+|=+..
T Consensus       192 ---~~a~~~~~~~ii~ttltti~~flpl~~~  219 (246)
T TIGR00966       192 ---NLSINQTLSRTINTSLTTLLAVLALYVF  219 (246)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               5677778889999999999999997764

This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.

>PRK11123 arginine transporter permease subunit ArtQ; Provisional

Probab=85.60  E-value=16  Score=32.86  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=45.7

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccc
Q 024490          136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLD  195 (267)
Q Consensus       136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~  195 (267)
                      ..+++-+........+.+.+++++ +++.+|++.++|+|++|..+.++-......+.|.+-
T Consensus       106 ~~iial~~~~~~~~~~~~~~~l~~v~~~~~eaa~slG~s~~q~~~~IilP~~~~~~l~~l~  166 (238)
T PRK11123        106 CGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG  166 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence            345666666666666778877765 677799999999999999988888777766677553

>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV

Probab=85.40  E-value=28  Score=31.51  Aligned_cols=56  Identities=14%  Similarity=0.215  Sum_probs=41.3

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHHh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVIA  189 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~a  189 (267)
                      ..++++++......-...-..+.+++ +++.+|++..+||+++|..+.    ..|.++-++
T Consensus       143 ~~~ii~~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~lGas~~~~f~~I~lP~l~p~i~~~  203 (272)
T TIGR03255       143 LAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAA  203 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHH
Confidence            45777888877777777777788766 556689999999999998874    445544433

This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT

Probab=84.70  E-value=29  Score=31.12  Aligned_cols=58  Identities=19%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490          135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP  192 (267)
Q Consensus       135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P  192 (267)
                      .+.+++.+........+-+.+.+++ +++.+|++..+|+|++|..+.+.-+.++..+..
T Consensus       133 ~~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~  191 (265)
T TIGR02139       133 LGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLT  191 (265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCChhhhhhheehhhchHHHHH
Confidence            4577778888777777777777655 677799999999999999887766655544444

This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.

>TIGR01253 thiP thiamine ABC transporter, permease protein

Probab=84.61  E-value=45  Score=33.20  Aligned_cols=57  Identities=9%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH----HHHHHHHh
Q 024490          133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ----VKRSLVIA  189 (267)
Q Consensus       133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~----~r~Ai~~a  189 (267)
                      ...|+++++.......+.--+.+.+++ +++.+|++..+|||++|..+.+    .|.++-++
T Consensus       131 ~~~~vil~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~dGas~~~~f~~I~lPl~~p~i~~~  192 (519)
T TIGR01253       131 GLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPT  192 (519)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHhCCHHHHHHHHHCCCCHHHHHHHhHHHHhHHHHHHH
Confidence            467899999988888888888888866 5677999999999999987644    45544433

The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).

>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system

Probab=84.53  E-value=20  Score=29.15  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 024490          136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVI  188 (267)
Q Consensus       136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~  188 (267)
                      ++++............-..+.+++ +++.+|++..+|+++||..+...-..++.
T Consensus        55 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p  108 (185)
T PF00528_consen   55 PIILAYVIFWFPFAIIIIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKP  108 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHH
Confidence            366666777777777777777754 45568999999999999887554444333

The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....

>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed

Probab=84.11  E-value=12  Score=39.50  Aligned_cols=114  Identities=18%  Similarity=0.306  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490          105 ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV  182 (267)
Q Consensus       105 ~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~  182 (267)
                      +++....+.++..+.+.|. +++   +.-++|+++  |=+.+.+.+-.||+++++++           |.+++||    +
T Consensus       296 ial~~~v~~~l~~l~l~g~-~l~---l~siaglil~iGi~Vd~~Ivi~eri~e~l~~-----------g~~~~~A----i  356 (755)
T PRK13024        296 IALLLYIFLTLGALSSLGA-VLT---LPGIAGLVLGIGMAVDANVLIFERIKEELRK-----------GKSLKKA----F  356 (755)
T ss_pred             HHHHHHHHHHHHHHHHHCC-Ccc---HHHHHHHHHHHHHHHhCcEEehHHHHHHHHc-----------CCCHHHH----H
Confidence            3444444444444444442 222   333556554  55555666778999888754           3455555    4


Q ss_pred             HHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490          183 KRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS  244 (267)
Q Consensus       183 r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~  244 (267)
                      +++.+.++.|.+++.-|.-+..+|-...|     ..|+.-..  +.+.+.++++...+.+++
T Consensus       357 ~~a~~~~~~~il~t~lTTii~~lpL~~~g-----~g~~~~fa--itl~~Gli~s~~~sl~v~  411 (755)
T PRK13024        357 KKGFKNAFSTILDSNITTLIAAAILFFFG-----TGPVKGFA--TTLIIGILASLFTAVFLT  411 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchhhhHH--HHHHHHHHHHHHHHHHHH
Confidence            67777788899999999999999965433     34433222  244445555544444443

>TIGR00439 ftsX putative protein insertion permease FtsX

Probab=83.89  E-value=5  Score=37.78  Aligned_cols=43  Identities=16%  Similarity=0.102  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490          150 MKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSP  192 (267)
Q Consensus       150 l~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P  192 (267)
                      .+..+-.+.+|++|++-+..+|||++.-.+|++.+++-.+++=
T Consensus       198 ~Ntirl~i~~Rr~EI~im~lvGAt~~~I~~pfl~eg~~~gl~G  240 (309)
T TIGR00439       198 GNSIRLQILSRRESIEVTKLLGATDSFILRPFLYQGMWQSIFG  240 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999999999998766653

FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.

>PRK10914 dipeptide transporter permease DppB; Provisional

Probab=83.77  E-value=41  Score=31.99  Aligned_cols=44  Identities=23%  Similarity=0.186  Sum_probs=29.8

Q ss_pred             HHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc
Q 024490          151 KRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA  197 (267)
Q Consensus       151 ~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m  197 (267)
                      +..+++..+  +++-++++.+.|.|+++-..   |..++.++.|.+..+
T Consensus       222 r~~R~~~~~~~~~~yV~~Ara~Gls~~~i~~---rhil~nal~piit~~  267 (339)
T PRK10914        222 RMTRSSMLEVLGEDYIRTARAKGLTRMRVII---VHALRNAMLPVVTVI  267 (339)
T ss_pred             HHHHHHHHHHhCchHHHHHHHcCcCcceehH---HHHHHHhHHHHHHHH
Confidence            334444444  56779999999999987653   445566777776544

>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed

Probab=83.09  E-value=34  Score=30.56  Aligned_cols=56  Identities=13%  Similarity=0.124  Sum_probs=41.7

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIA  189 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~a  189 (267)
                      ..+.++++...........+++.+++ +++.+|++..+|+|+||..+.+.-..++.+
T Consensus       127 ~~~iil~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~I~lP~l~p~  183 (256)
T PRK09500        127 FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPA  183 (256)
T ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHhCChHHHHHHHHcCCChhhHHhHhHHHHhHHH
Confidence            36777777777777777777777765 556689999999999998876655444433

>PRK11275 pstC phosphate transporter permease subunit PstC; Provisional

Probab=82.97  E-value=20  Score=33.87  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHH
Q 024490          143 MTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQV  182 (267)
Q Consensus       143 m~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~  182 (267)
                      ........+.+.+.+++ +++..|++.++|+|+||....++
T Consensus       179 l~~~p~~~~~~~~al~~V~~~~~EAA~aLGas~~q~~~~Vi  219 (319)
T PRK11275        179 IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIV  219 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            44455556777777755 56678999999999999987554

>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transporter, permease protein

Probab=82.97  E-value=39  Score=33.69  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=41.6

Q ss_pred             hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHH----HHHHHHHHHHhh
Q 024490          135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQAT----KQQVKRSLVIAL  190 (267)
Q Consensus       135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~----~~~~r~Ai~~al  190 (267)
                      .|+++.+.....-....-+.+.+++ +++.+|++..+|||++|..    -|..+.++-++.
T Consensus       134 ~~vil~~~~~~~P~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~~~~I~lP~~~p~i~~~~  194 (546)
T TIGR03262       134 WGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAA  194 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHcCCCcceeEEEEehhccHHHHHHHH
Confidence            4778888888777777777777755 5667899999999999986    455555555443

>PRK10999 malF maltose transporter membrane protein; Provisional

Probab=82.48  E-value=21  Score=36.32  Aligned_cols=57  Identities=18%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHhh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIAL  190 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~al  190 (267)
                      ..++++.|......-..--+.+.+++ .++.+|++...||++||...    |.+|.++..++
T Consensus       375 ~~~Viiv~vw~~~Pf~~lil~aaL~sIp~eL~EAA~iDGAs~~q~F~~ItLPLL~P~l~~~~  436 (520)
T PRK10999        375 KTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLM  436 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHhhhheeeHHhhHHHHHHHH
Confidence            44677888888778888888888877 67779999999999999875    55555554443

>TIGR01185 devC DevC protein

Probab=82.35  E-value=15  Score=35.34  Aligned_cols=56  Identities=21%  Similarity=0.255  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHH
Q 024490          148 VTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIM  214 (267)
Q Consensus       148 lal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqIL  214 (267)
                      .-.+.++....+|+.||-.+.|+|+++++-.+-++.||+--++           +-.++|.-.|..+
T Consensus       275 ~~~~~~~~~v~er~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~-----------iG~~~G~~lg~~~  330 (380)
T TIGR01185       275 IVYQILYTEVADHLSEYATLKAIGYTQKYLLGVILQEALLLAC-----------LGYLPGWGFAILL  330 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            3455778889999999999999999999999999999887655           2256777766554

This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.

>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC

Probab=82.10  E-value=39  Score=30.55  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             HHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490          150 MKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIAL  190 (267)
Q Consensus       150 l~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al  190 (267)
                      .+-.+++.++  +++-+|++.++|+|+++..+..+-..+...+
T Consensus       140 ~r~~r~~~~~~~~~~~veaA~~~G~s~~~ii~~~ilP~~~p~i  182 (258)
T TIGR02790       140 ARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPI  182 (258)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHcCCChhhhHHHHhHHhhHHHH
Confidence            4445555544  4677999999999999987766555444333

This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.

>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional

Probab=80.75  E-value=5.8  Score=37.34  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490          151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALS  191 (267)
Q Consensus       151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~  191 (267)
                      +...-.+.+|++|++-+-.+|||++.-.+|++.+++--++.
T Consensus       199 ntir~~v~~r~~ei~im~~~GAt~~~I~~~fl~eg~~~g~~  239 (309)
T PRK11026        199 NSVRLSIFSRRDTINVMKLIGATDGFILRPFLYGGALLGFS  239 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999999999876654

>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]

Probab=80.65  E-value=46  Score=30.99  Aligned_cols=163  Identities=12%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH-----HHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q 024490            5 DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIV-----RAFLQLSVIGFVLQFIFSQDNRGWIILAYL   79 (267)
Q Consensus         5 ~~~~~~~~~~g~~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~-----R~~vQL~~vG~vL~~if~~~~~~~~~l~~l   79 (267)
                      ++.|-...+ -...+.+..+++++|+....++-+...-+...+.+     +..++|.++=..+       ...+|..+  
T Consensus        15 ~~~~~r~~L-i~~al~~~~l~L~~Pl~~vf~eAf~kG~~~~~~~~~~PdalsAi~LTllva~I-------~VPlN~vF--   84 (287)
T COG4208          15 PIRWVRWLL-IAVALGFLALLLLVPLIAIFYEAFSKGLGVFLAALSDPDALSAIKLTLLVALI-------AVPLNVVF--   84 (287)
T ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcChhHHHHHHHHHHHHHH-------hccHHHHH--
Confidence            444555555 33345666677888887777776655555544432     3444444332111       11222221  


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHHHHH--HHHHHHHHHHH-HHHHhcc--------CCCCccchhhhhhHHhhhhHHHHHH
Q 024490           80 FMVIVAGYTAGQRAKHVPRGKYVAGA--SILAGTAVTML-MLVVLNV--------FPFTPRYIIPVAGMMVGNAMTVTGV  148 (267)
Q Consensus        80 ~M~~~As~~a~~R~~~~~~~~~~~~~--si~~~~~~~l~-~~~~~~~--------~~~~~ry~IPi~GMllGNsm~a~sl  148 (267)
                        -..++|. ..|-+-+.|..+..++  ...++-.+... ++++.|.        ...+-|-+-.+=||+++..-..+--
T Consensus        85 --Gv~aAW~-iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~wl~~~~iqIiFa~PGiVLaT~FVT~PF  161 (287)
T COG4208          85 --GVAAAWA-IARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPF  161 (287)
T ss_pred             --HHHHHHH-HHHccCCchhhhhhhhcCCCcccHHHHHHHHHHHHcccccchHHHHhCCceEEEecccceeeehhcccch
Confidence              1223443 3343333333333332  22223222221 1111121        1134555555556666655444333


Q ss_pred             HHHHHHHHH-HHhHHHHHHHHHCCCCHHHHHHH
Q 024490          149 TMKRLRDDI-KIQLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       149 al~r~~~~l-~~~~~~ie~~LalGAt~~eA~~~  180 (267)
                      -.+-+---+ ++..||=|+++.||||.||....
T Consensus       162 VaREliPlmq~qG~~eEeAA~~LGAsgWQtFwr  194 (287)
T COG4208         162 VARELIPLMQEQGTDEEEAALTLGASGWQTFWR  194 (287)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHhccccceeeee
Confidence            333333222 44567789999999999987544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 101/257 (39%)

Query: 4   MDVEWLLDFLKGMIK----------PLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFL 53
            D + + D  K ++             A +  + L   L  L K     E    +V+ F 
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSK----QE---EMVQKF- 82

Query: 54  QLSVIGFVLQFIFSQDNRGWIILAY------------LFMVIVAG-YTAGQR-AK-HVPR 98
               +  VL     + N  +++               +++      Y   Q  AK +V R
Sbjct: 83  ----VEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 99  ----------------GKYV-------AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVA 135
                            K V       +G + +A      L   V     F       + 
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDF------KIF 185

Query: 136 GMMVGNAMTVTGVT--MKRL----------RDD----IKIQLNLVETALALGATPRQATK 179
            + + N  +   V   +++L          R D    IK++++ ++  L      R    
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKS 240

Query: 180 QQVKRSLVIALSPVLDN 196
           +  +  L++     L N
Sbjct: 241 KPYENCLLV-----LLN 252

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2onk_C	284	Molybdate/tungstate ABC transporter, permease prot	92.17
3tui_A	217	D-methionine transport system permease protein ME;	91.87
3d31_C	295	Sulfate/molybdate ABC transporter, permease protei	91.8
3rlf_F	514	Maltose transport system permease protein MALF; in	80.69

>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1

Probab=92.17  E-value=5.5  Score=34.71  Aligned_cols=54  Identities=15%  Similarity=0.225  Sum_probs=40.7

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV  187 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~  187 (267)
                      ..+.++............-+++.+++ +++.+|++...|||++|....+.=..++
T Consensus       151 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~  205 (284)
T 2onk_C          151 LPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSV  205 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhhHHHHhhHHhhH
Confidence            56777777777777777777777765 5677999999999999997655444333

>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*

Probab=91.87  E-value=3.8  Score=33.37  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=41.6

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL  190 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al  190 (267)
                      ..+.++..+........+.+++++++ +++.+|++.++|+|++|....+.=..++..+
T Consensus        89 ~~~~il~~~~~~~~~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~i~lP~~~p~i  146 (217)
T 3tui_A           89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGL  146 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHH
Confidence            45667777777777777778887765 5667899999999999988655544444333

>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1

Probab=91.80  E-value=6.3  Score=34.55  Aligned_cols=58  Identities=19%  Similarity=0.105  Sum_probs=44.2

Q ss_pred             hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490          133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL  190 (267)
Q Consensus       133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al  190 (267)
                      ...+++++...........-+++.+++ +++.+|++...||+++|....+.=..++-++
T Consensus       162 ~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP~~~p~i  220 (295)
T 3d31_C          162 ALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYL  220 (295)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCCHHHHHHHhhHHhhHHHH
Confidence            356788888888888888888888876 5677999999999999998765544444333

>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F

Probab=80.69  E-value=9  Score=37.13  Aligned_cols=79  Identities=19%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc--cccchhheeechHH
Q 024490          132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL--DNAKTVGLISLPGA  208 (267)
Q Consensus       132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i--~~m~~vGlVslPGm  208 (267)
                      -+..++++.+..........-+.+.+++ +++.+|++..+|||+||....++=..++-++++..  .-..+.+-...|-+
T Consensus       367 ~a~~~vil~~~~~~~P~~~~i~~a~l~~Ip~~l~EAA~idGAs~~q~f~~IiLPl~~P~I~~~~il~fi~a~~~f~~~~l  446 (514)
T 3rlf_F          367 TARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL  446 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888888888888888888865 67779999999999999987665555554444432  22233344445544


Q ss_pred             HH
Q 024490          209 MT  210 (267)
Q Consensus       209 Mt  210 (267)
                      ++
T Consensus       447 Lt  448 (514)
T 3rlf_F          447 LT  448 (514)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d2onkc1	252	Molybdate/tungstate transport system permease prot	95.73
d3dhwa1	203	D-methionine transport system permease protein Met	89.14
d3d31c1	248	Sulfate/molybdate ABC transporter, permease protei	88.93
d2r6gf2	244	Maltose transport system permease protein MalF {Es	80.73

>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Molybdate/tungstate transport system permease protein WtpB (ModB)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.73  E-value=0.27  Score=40.18  Aligned_cols=64  Identities=14%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             CccchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH----HHHHHHHhh
Q 024490          127 TPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ----VKRSLVIAL  190 (267)
Q Consensus       127 ~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~----~r~Ai~~al  190 (267)
                      .....-...|++++++......+..-+++.+++ +++.+|++..+|||++|..+.+    .|+++-.+.
T Consensus       121 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~  189 (252)
T d2onkc1         121 PLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGA  189 (252)
T ss_dssp             SSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhccccccchhhHHHHHHHHhhhHHHHHHHHhcCCCccccceEEEhHHhHHHHHHHH
Confidence            334445667899999999999999999999876 5666899999999999997654    455544443

>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.21  Score=39.63  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP  192 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P  192 (267)
                      ..+.+++-......-..+.+.+++++ +++.+|++.++|||+||..+..+-...+.++.|
T Consensus        84 ~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~  143 (203)
T d3dhwa1          84 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVN  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcccchHHHHHHcCCchhhhhHHhhHHHhHHHHHH
Confidence            44667778888888888899999987 456699999999999999887665554444444

>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Sulfate/molybdate ABC transporter, permease protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=88.93  E-value=4.6  Score=32.15  Aligned_cols=58  Identities=19%  Similarity=0.091  Sum_probs=46.1

Q ss_pred             hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490          134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALS  191 (267)
Q Consensus       134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~  191 (267)
                      ..++++..+......+..-+++.+++ +++.+|++..+|||++|..+.+.-..++..+.
T Consensus       128 ~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~  186 (248)
T d3d31c1         128 LPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLL  186 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHH
T ss_pred             cceeehhhcccchhhHHHHHHHHHHhcchhHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence            45789999999999999999999977 56668999999999999887655554444433

>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Maltose transport system permease protein MalF
species: Escherichia coli [TaxId: 562]

Probab=80.73  E-value=8.5  Score=30.70  Aligned_cols=52  Identities=17%  Similarity=-0.006  Sum_probs=40.5

Q ss_pred             cchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH
Q 024490          129 RYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ  180 (267)
Q Consensus       129 ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~  180 (267)
                      ...-...++++.+.-.....+.--+++.+++ +++.+|++...||++||-.+.
T Consensus       104 ~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~  156 (244)
T d2r6gf2         104 DPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFK  156 (244)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHcCCCccCCeEE
Confidence            3344566888888877788888888888866 677799999999999976543