Citrus Sinensis ID: 024816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MTHHFLLHTSLIAQSSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRKRFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEHHHEEccccccccccccccccccccEEEccccccccccEEEEcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccEEccHHHHHHHHHHcccccHccccccccccccccHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccEEEEEEccccccccccHHcHcHHHccccEEEcHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTHHFLLHTSliaqsssstfstlscsfkphkipiitnnpktipatdrvidfgkykgkmlgtlpsnYLKWVSKNLRAQDFEHWAMLADQvlqdpvykdriEWEFAEnvltgnsndvnknknmatnESSVSRLLELSqrfgwdnedrvgwsklnfellgtskggripriserKVAKETLKVQKkerfgglllseSEERRRERRMRVKEKVSgvkigngngdgnggvgsslrsekrdqdltveihnpfpGREALLKKVMSRKRFL
Flexible Loop (DISEMBL)
MTHHFLLHTsliaqssssTFSTLSCSFKPHkipiitnnpktipatdRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAEnvltgnsndvnknknmatnESSVSRLLELSQRFGWDNEDRVGWSKLNfellgtskggripriserkvaketlkvqkkerfgglllseseerrrerrmrvkekvsgvkigngngdgnggvgsSLRSEKRDQDltveihnpfpgreaLLKKVMSRKRFL
Low Complexity Region (SEG)
MTHHFLlhtsliaqsssstfstlscsFKPHkipiitnnpktipATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGGLLLseseerrrerrmrvkekvsGVKIgngngdgnggvgSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRKRFL
Disordered region (IsUnstruct)
****FLLHTSLIA*****TFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLT*********************LLELSQRFGWDNEDRVGWSKLNFELLGTS*******************************************************************************************************
Disordered Region (DISOPRED)
***********************************TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNS*****************RLLELSQRFGWDNEDRVGWSKLNFELLGTSKGG***************************************************************************************ALLKKVMSRK***
Disordered Region (DISEMBL)
MTHHFLLHTSLIAQ*********SCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGGLLLSES*************KVSGVKIGNGNGDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKK********
Disordered Region (DISPRO)
*THHFLLHTSLIAQSSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGN****************VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKV*KK************************************************************NPFPGREALLKKVMSR*R**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTHHFLLHTSLIAQSSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRKRFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224100499	275	predicted protein [Populus trichocarpa]	0.935	0.890	0.529	9e-61
297735755	231	unnamed protein product [Vitis vinifera]	0.843	0.956	0.468	4e-48
15223713	285	uncharacterized protein [Arabidopsis tha	0.904	0.831	0.478	1e-47
357454855	273	hypothetical protein MTR_2g101430 [Medic	0.809	0.776	0.476	2e-47
388496674	281	unknown [Lotus japonicus]	0.809	0.754	0.469	2e-46
297852826	288	hypothetical protein ARALYDRAFT_892069 [	0.568	0.517	0.589	6e-43
449492539	261	PREDICTED: uncharacterized LOC101215921	0.748	0.750	0.486	3e-42
449448154	263	PREDICTED: uncharacterized protein LOC10	0.755	0.752	0.486	9e-42
147854312	432	hypothetical protein VITISV_007010 [Viti	0.709	0.430	0.492	2e-40
116791479	292	unknown [Picea sitchensis]	0.763	0.684	0.357	2e-31

>gi|224100499|ref|XP_002311900.1| predicted protein [Populus trichocarpa] gi|222851720|gb|EEE89267.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 143/270 (52%), Positives = 171/270 (63%), Gaps = 25/270 (9%)

Query: 17  SSTFSTLSCSFKPHKIPIITNNPK-------TIPATDRVIDFGKYKGKMLGTLPSNYLKW 69
           SST    +CSFKP+K P  T+ P        T P TDRVIDFGKYKGKMLG+LPS YLKW
Sbjct: 7   SSTLPNFTCSFKPNK-PHSTSWPPNKPLKITTTPITDRVIDFGKYKGKMLGSLPSTYLKW 65

Query: 70  VSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMA--TNESS 127
           VSKNLRA DFEHWA LADQVLQDPVYKDR+EWE A+  L GN+N      +     ++S+
Sbjct: 66  VSKNLRAGDFEHWAKLADQVLQDPVYKDRLEWELADTALNGNNNRSISGSSSLSRNDDSA 125

Query: 128 VSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGG 187
           VSRLLE+S+RFGWDNED+VGWS++NFELLGTSKGG+IPR S      E  K   +     
Sbjct: 126 VSRLLEISERFGWDNEDKVGWSRVNFELLGTSKGGKIPRRSSSSSGVEEDKDLSRVENDK 185

Query: 188 LLLSESE-----------ERRRERRMRVKEKVSGVKIGNGNG-DGNGGVGSSLRSEKR-- 233
           +L    E           +++ E+R    E V   K G GN  DG+GGVG       R  
Sbjct: 186 VLSESEERRRERRERAKLKKQVEKRKDKIEIVMKSKDGFGNRVDGDGGVGLEGSKPGRVD 245

Query: 234 -DQDLTVEIHNPFPGREALLKKVMSRKRFL 262
             QD  VE  + FPGRE+LLKKV++RK  L
Sbjct: 246 HQQDCKVENSSRFPGRESLLKKVLNRKNVL 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735755|emb|CBI18442.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 149/267 (55%), Gaps = 46/267 (17%)

Query: 4   HFLLHTSLIAQSSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLP 63
           H L H+S +                P K  II     + P TDRVI FGK+KGKMLGTLP
Sbjct: 3   HILFHSSTL----------------PPKTHIIK---ASTPPTDRVIVFGKHKGKMLGTLP 43

Query: 64  SNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMAT 123
           S YLKWVSKNLRA D E WA LADQVLQ P+Y+DR+EWE AE +LTGN       +N A 
Sbjct: 44  STYLKWVSKNLRAGDTEQWAKLADQVLQHPLYQDRLEWEQAERLLTGNDAASRGVENPA- 102

Query: 124 NESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKE 183
                  L  LS+ FGWDN D VGWS+++F LLGTSK GRIPR+   +   E  + +K  
Sbjct: 103 -----EELAHLSETFGWDNGDGVGWSRVDFGLLGTSKTGRIPRVGSERGGGEVAEREKNG 157

Query: 184 RFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKRDQDLTVE--- 240
             GG      E  R + RM + EK SG   GN  GD              D+D TVE   
Sbjct: 158 GSGGGRARRRERSRMKGRMGIVEK-SGDSFGNTGGDAG------------DEDRTVENRH 204

Query: 241 -----IHNPFPGREALLKKVMSRKRFL 262
                + +PFPGR+ LLKKV+ RKRFL
Sbjct: 205 RPHSPVRSPFPGRQGLLKKVLERKRFL 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223713|ref|NP_175519.1| uncharacterized protein [Arabidopsis thaliana] gi|12320781|gb|AAG50536.1|AC079828_7 hypothetical protein [Arabidopsis thaliana] gi|34146854|gb|AAQ62435.1| At1g51080 [Arabidopsis thaliana] gi|51969056|dbj|BAD43220.1| hypothetical protein [Arabidopsis thaliana] gi|332194499|gb|AEE32620.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/255 (47%), Positives = 165/255 (64%), Gaps = 18/255 (7%)

Query: 15  SSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNL 74
           SS+  FST        K+ II    +T+ A D +IDFGK+KGKMLGTLPS+YLKWVSKNL
Sbjct: 38  SSNGIFSTNQSKPLIKKLQII----ETLAARDTIIDFGKHKGKMLGTLPSSYLKWVSKNL 93

Query: 75  RAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNE---SSVSRL 131
           RA  FE+WA LAD+VL+D VYKDR EWEFAE +L G+   +    ++  +    +SVS L
Sbjct: 94  RAGVFEYWAKLADEVLEDDVYKDRTEWEFAEKILHGSDESMRALTSVRKSREEVNSVSML 153

Query: 132 LELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETLKVQKKERFGGLLLS 191
           LE+S+RFGWDNED++GWSK+NFELLGTSKGGRIPR+  RK  +E  +  +  R   +   
Sbjct: 154 LEISERFGWDNEDKIGWSKINFELLGTSKGGRIPRL--RKANEEEEERGEMVRRREIKKK 211

Query: 192 ESEERRRERRMRVKEKVSGVKIGNGNG------DGNGGVGSSLRSEKRDQDLTVEIHNPF 245
           E EE     R + + +     +G  +G      +  G +G   + E  ++ L  +I +PF
Sbjct: 212 EEEEDENGWRRKQRRERMRQSLGRDDGKTVNRSEQKGVLG---KLEDVEKQLEPKIQSPF 268

Query: 246 PGREALLKKVMSRKR 260
           PGRE+LLKKVM+++R
Sbjct: 269 PGRESLLKKVMNKRR 283

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454855|ref|XP_003597708.1| hypothetical protein MTR_2g101430 [Medicago truncatula] gi|355486756|gb|AES67959.1| hypothetical protein MTR_2g101430 [Medicago truncatula]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 140/233 (60%), Gaps = 21/233 (9%)

Query: 44  ATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEF 103
           A DRVIDFGKYKGKMLG+LPS+YLKWVSKNLRA++FE WA+LADQVL DP+YKDRIEWEF
Sbjct: 47  ARDRVIDFGKYKGKMLGSLPSSYLKWVSKNLRAREFEEWAILADQVLLDPIYKDRIEWEF 106

Query: 104 AENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGR 163
           A NVL GN+      K++   +S    L ++S+RFGWDN D+VGWSK++F+LLGTSKGGR
Sbjct: 107 ALNVLNGNNISSGAAKSIGAADSE---LQKISERFGWDNLDKVGWSKVDFDLLGTSKGGR 163

Query: 164 IPRISERKVAKETLKVQKKE--------------RFGGLLLSESEERRRERRMRVKEKVS 209
           IPR+     +      Q  +                     S S  +R ERR R K +  
Sbjct: 164 IPRLVNFSDSDANTNTQPNQPPATSIIGSNGSNSSSSSSSSSSSRTKRMERRARQKMRSR 223

Query: 210 GVKIGNGNGDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRKRFL 262
                    D N         E  D ++ + I NPFPGR+ALL+K ++    L
Sbjct: 224 TTNEAQQQKDDN----VVDIEEVEDDNINLAIVNPFPGRQALLRKAINHGSIL 272

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496674|gb|AFK36403.1| unknown [Lotus japonicus]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/228 (46%), Positives = 148/228 (64%), Gaps = 16/228 (7%)

Query: 41  TIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIE 100
            + A DRV+DFGKYKGKMLG+LPS+YLKWVSKNLRA D E WA LADQVL DP+Y+DRIE
Sbjct: 52  AVAARDRVVDFGKYKGKMLGSLPSSYLKWVSKNLRAGDSEEWAKLADQVLGDPIYRDRIE 111

Query: 101 WEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSK 160
           WE A NVL GNS+  +  +  +    +VS L E+S+RFGWDN D++GW KL+F+LLGT K
Sbjct: 112 WELALNVLNGNSS--SSRQPTSIRGGAVSELEEISERFGWDNLDKIGWGKLDFDLLGTCK 169

Query: 161 GGRIPRISERKVAKETLKVQKKERFGGLLLSESEE--------RRRERRMRVKEKVSGVK 212
           GGRIPR+    + +      K++R       E +         RR+  ++R +E+ +  +
Sbjct: 170 GGRIPRLVNLNLIQP-----KQQRVRDNHTPEPQPSRRTERRERRKMMKLRTQEEEAQAE 224

Query: 213 IGNGNGDGNGGVGSSLRSEKRDQDL-TVEIHNPFPGREALLKKVMSRK 259
               N + +     S R E+++QD+    I NPFPGR+ALL++ M+ +
Sbjct: 225 QQQLNNNFHKSHTHSHREEEQEQDVKNAPIANPFPGRQALLRRAMNHR 272

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852826|ref|XP_002894294.1| hypothetical protein ARALYDRAFT_892069 [Arabidopsis lyrata subsp. lyrata] gi|297340136|gb|EFH70553.1| hypothetical protein ARALYDRAFT_892069 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 115/156 (73%), Gaps = 7/156 (4%)

Query: 15  SSSSTFSTLSCSFKPHKIPIITNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNL 74
           SS+  F T        K+ II    +T+ A D +IDFGK+KGKMLGTLPS+YLKWVSKNL
Sbjct: 38  SSNRIFPTNQPKPLVKKLQII----ETLAARDTIIDFGKHKGKMLGTLPSSYLKWVSKNL 93

Query: 75  RAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNKNKNMATNE---SSVSRL 131
           RA D E+WA LAD+VL+D VYKDR EWE AE +L G+   +    ++  +    +SVS L
Sbjct: 94  RAGDSEYWAKLADEVLEDDVYKDRTEWEVAEKILHGSDESMRALTSVKKSREEVNSVSML 153

Query: 132 LELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRI 167
           LE+S+RFGWDNED++GWSK+NFELLGTSKGGRIPR+
Sbjct: 154 LEISERFGWDNEDKIGWSKINFELLGTSKGGRIPRL 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492539|ref|XP_004159027.1| PREDICTED: uncharacterized LOC101215921 [Cucumis sativus]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 136/222 (61%), Gaps = 26/222 (11%)

Query: 38  NPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKD 97
           NP  IP  DRVI FGK+KGKMLGTLPS YLKW+SKNLRA++FE WA+LADQVL+DPVY+D
Sbjct: 55  NP--IPGRDRVIGFGKHKGKMLGTLPSTYLKWISKNLRAREFEEWAILADQVLEDPVYQD 112

Query: 98  RIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLG 157
           R++WEFA NVLTG       N         VS L E+S RFGWD +++ GW  ++FELLG
Sbjct: 113 RVQWEFAHNVLTGAGRSGRDN--------VVSELSEISDRFGWDWDNKSGWRGVDFELLG 164

Query: 158 TSKGGRIPRISERKVAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGN 217
           TSKGGRIPR  E     E+   Q      G         RR+R    ++K +G       
Sbjct: 165 TSKGGRIPRRIEPTQKSESKTAQN---VSGGGGGGRRRERRDRLREKRDKSTG------- 214

Query: 218 GDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRK 259
               GG  S  ++E   ++     +NPFPGR+ALLK+V + K
Sbjct: 215 ----GGEKSERKTEI--ENPVPRFNNPFPGRQALLKRVATIK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448154|ref|XP_004141831.1| PREDICTED: uncharacterized protein LOC101215921 [Cucumis sativus]

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 138/222 (62%), Gaps = 24/222 (10%)

Query: 38  NPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKD 97
           NP  +P  DRVI FGK+KGKMLGTLPS YLKW+SKNLRA++FE WA+LADQVL+DP+Y+D
Sbjct: 55  NP--VPGRDRVIGFGKHKGKMLGTLPSTYLKWISKNLRAREFEEWAILADQVLEDPIYQD 112

Query: 98  RIEWEFAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLG 157
           R++WEFA NVLTG       N         VS L E+S RFGWD +++ GW  ++FELLG
Sbjct: 113 RVQWEFAHNVLTGAGRSGRDN--------VVSELSEISDRFGWDWDNKSGWRGVDFELLG 164

Query: 158 TSKGGRIPRISERKVAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGN 217
           TSKGGRIPR  E     E+ K  +    GG         RR+R    +EK +G       
Sbjct: 165 TSKGGRIPRRIEPTQKSES-KTAQNVSGGGGGGGGRRRERRDRLREKREKSTG------- 216

Query: 218 GDGNGGVGSSLRSEKRDQDLTVEIHNPFPGREALLKKVMSRK 259
               GG  S  ++E   ++     +NPFPGR+ALLK+V + K
Sbjct: 217 ----GGEKSERKTEI--ENPVPRFNNPFPGRQALLKRVATIK 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854312|emb|CAN79114.1| hypothetical protein VITISV_007010 [Vitis vinifera]

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 125/213 (58%), Gaps = 27/213 (12%)

Query: 58  MLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEFAENVLTGNSNDVNK 117
           MLGTLPS YLKWVSKNLRA D E WA LADQVLQ P+Y+DR+EWE AE +LTGN      
Sbjct: 1   MLGTLPSTYLKWVSKNLRAGDTEQWAKLADQVLQHPLYQDRLEWEQAERLLTGNDAASRG 60

Query: 118 NKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGGRIPRISERKVAKETL 177
            +N A        L  LS+ FGWDN D VGWS+++F LLGTSK GRIPR+   +   E  
Sbjct: 61  VENPA------EELAHLSETFGWDNGDGVGWSRVDFGLLGTSKTGRIPRVGSERGGGEVA 114

Query: 178 KVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNGGVGSSLRSEKRDQDL 237
           + +K    GG      E  R + RM + EK SG   GN  GD              D+D 
Sbjct: 115 EREKNGGSGGGRARRRERSRMKGRMGIVEK-SGDSFGNTGGDAG------------DEDR 161

Query: 238 TVE--------IHNPFPGREALLKKVMSRKRFL 262
           TVE        + +PFPGR+ LLKKV+ RKRFL
Sbjct: 162 TVENRHRPHSPVRSPFPGRQGLLKKVLERKRFL 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116791479|gb|ABK25996.1| unknown [Picea sitchensis]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 32/232 (13%)

Query: 43  PATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWE 102
           PA D +I+FGKYKG+M+GTLP  YL+WV +N+       W+ LA+QVL+DP Y+DR+EWE
Sbjct: 70  PARDTIINFGKYKGRMMGTLPPRYLRWVVENVSGGPTGEWSELAEQVLEDPFYRDRLEWE 129

Query: 103 FAENVLTGNSNDVNKNKNMATNESSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSKGG 162
             +  + G     +     +++    + + +++ RFGWD +D  GW K+NF LLGTSKGG
Sbjct: 130 KVQMAMDGCGKYASSVVRSSSSPG--ADIFQMATRFGWDMDDEAGWRKVNFSLLGTSKGG 187

Query: 163 RIPRISERKVAKETLKVQKKERFGGLLLSESEERRRERRMRVKEKVSGVKIGNGNGDGNG 222
           RIPRI +R   +  L +QK+             R  + +      VS       N DG  
Sbjct: 188 RIPRIKDRPNRQLNLSLQKQ-----------MGRPTKAKSGFGSSVSANTFTRDNYDGVC 236

Query: 223 GVGSSLRSE------------KRDQDLT-------VEIHNPFPGREALLKKV 255
              + L++E            K  +D +        +  +PFPGREALL+K+
Sbjct: 237 DDPNGLKAELLKRRETRRARQKSRKDFSQTQLEQLPKGSSPFPGREALLRKI 288

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2026021	285	AT1G51080 "AT1G51080" [Arabido	0.496	0.456	0.651	5.4e-51

TAIR|locus:2026021 AT1G51080 "AT1G51080" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 5.4e-51, Sum P(2) = 5.4e-51
 Identities = 88/135 (65%), Positives = 108/135 (80%)

Query:    44 ATDRVIDFGKYKGKMLGTLPSNYLKWVSKNLRAQDFEHWAMLADQVLQDPVYKDRIEWEF 103
             A D +IDFGK+KGKMLGTLPS+YLKWVSKNLRA  FE+WA LAD+VL+D VYKDR EWEF
Sbjct:    63 ARDTIIDFGKHKGKMLGTLPSSYLKWVSKNLRAGVFEYWAKLADEVLEDDVYKDRTEWEF 122

Query:   104 AENVLTGNSNDVNKNKNMATNE---SSVSRLLELSQRFGWDNEDRVGWSKLNFELLGTSK 160
             AE +L G+   +    ++  +    +SVS LLE+S+RFGWDNED++GWSK+NFELLGTSK
Sbjct:   123 AEKILHGSDESMRALTSVRKSREEVNSVSMLLEISERFGWDNEDKIGWSKINFELLGTSK 182

Query:   161 GGRIPRISERKVAKE 175
             GGRIPR+  RK  +E
Sbjct:   183 GGRIPRL--RKANEE 195

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam12843	67	pfam12843, DUF3820, Protein of unknown function (D	0.002

>gnl|CDD|193317 pfam12843, DUF3820, Protein of unknown function (DUF3820)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 51 FGKYKGKMLGTLPSNYLKW 69
          FGKYKG++L  LP  YL W
Sbjct: 16 FGKYKGRLLIDLPEPYLVW 34

This a bacterial family that is functionally uncharacterized. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF12843	67	DUF3820: Protein of unknown function (DUF3820); In	99.79
COG3530	71	Uncharacterized protein conserved in bacteria [Fun	99.7
PRK06310	250	DNA polymerase III subunit epsilon; Validated	98.64
PRK06309	232	DNA polymerase III subunit epsilon; Validated	98.55
PRK07983	219	exodeoxyribonuclease X; Provisional	98.35

>PF12843 DUF3820: Protein of unknown function (DUF3820); InterPro: IPR024530 This protein family is mostly found in bacteria and is currently functionally uncharacterised

Probab=99.79  E-value=4.2e-20  Score=139.47  Aligned_cols=55  Identities=25%  Similarity=0.509  Sum_probs=52.8

Q ss_pred             CCCcCchhhcccccccccCCCeeeccCChhHHHHHhhc-CCCCChhHHHHHHHHHh
Q 024816           36 TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRAQDFEHWAMLADQVL   90 (262)
Q Consensus        36 ~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~G~lg~Wa~LA~eVL   90 (262)
                      ||++.|++++.++||||||||+.|+|||++||+||++| ||+|++|++++++.||=
T Consensus         1 m~~~~L~~l~~~~MPFGKyKG~~l~dLP~~YL~W~~~kGfP~GkLG~~l~~~~eik   56 (67)
T PF12843_consen    1 MDPEILIELAQTKMPFGKYKGRPLADLPESYLVWFARKGFPKGKLGELLALMYEIK   56 (67)
T ss_pred             CCHHHHHHHHhcCCCCcccCCcCHhhCCHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999 99999999999998873

>COG3530 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.70  E-value=6.3e-18  Score=128.40  Aligned_cols=56  Identities=23%  Similarity=0.505  Sum_probs=52.6

Q ss_pred             CCCcCchhhcccccccccCCCeeeccCChhHHHHHhhc-CCCCChhHHHHHHHHHhc
Q 024816           36 TNNPKTIPATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRAQDFEHWAMLADQVLQ   91 (262)
Q Consensus        36 ~np~~L~~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~G~lg~Wa~LA~eVL~   91 (262)
                      |.++.|++++++.||||||+|+.|+|||+.||.||+++ ||.|++|..++|++++=.
T Consensus         1 meke~L~~ia~t~MPFGKYqGR~liDLPe~YLlWFarkgFP~G~lG~Lm~l~l~ik~   57 (71)
T COG3530           1 MEKEHLIEIANTPMPFGKYQGRVLIDLPEEYLLWFARKGFPPGKLGRLMQLTLEIKI   57 (71)
T ss_pred             CCHHHHHHHHcCCCCcccccceeeecCCHHHHHHHHHhCCCchHHHHHHHHHHHHhh
Confidence            56788999999999999999999999999999999999 999999999999998743

>PRK06310 DNA polymerase III subunit epsilon; Validated

Probab=98.64  E-value=1.3e-08  Score=89.85  Aligned_cols=34  Identities=32%  Similarity=0.745  Sum_probs=30.3

Q ss_pred             hhcccccccccCCCeeeccCChhHHHHHhhc-CCC
Q 024816           43 PATDRVIDFGKYKGKMLGTLPSNYLKWVSKN-LRA   76 (262)
Q Consensus        43 ~li~t~MPFGKYKGr~L~DLPe~YL~Wf~kk-fp~   76 (262)
                      +++..+||||||||+.|.|||++||+||.++ ||.
T Consensus       187 ~~~~~~~~fGK~kG~~~~~~~~~y~~w~~~~~~~~  221 (250)
T PRK06310        187 PIKMKYMPLGKHKGRLFSEIPLEYLQWASKMDFDQ  221 (250)
T ss_pred             CcccccccCcccCCCCcccCCHHHHHHHHhCCCCc
Confidence            4667799999999999999999999999776 776

>PRK06309 DNA polymerase III subunit epsilon; Validated

Probab=98.55  E-value=2.8e-08  Score=86.31  Aligned_cols=28  Identities=43%  Similarity=0.872  Sum_probs=26.3

Q ss_pred             ccccccccCCCeeeccCChhHHHHHhhc
Q 024816           46 DRVIDFGKYKGKMLGTLPSNYLKWVSKN   73 (262)
Q Consensus        46 ~t~MPFGKYKGr~L~DLPe~YL~Wf~kk   73 (262)
                      ..+||||||||+.+.|||++||.||+++
T Consensus       183 ~~~~~fgk~kg~~~~~~~~~y~~w~~~~  210 (232)
T PRK06309        183 IFKMPFGKYKGKPLSEVPKSYIAWLEKQ  210 (232)
T ss_pred             cceecccccCCEEHHHcCHHHHHHHHcC
Confidence            3489999999999999999999999988

>PRK07983 exodeoxyribonuclease X; Provisional

Probab=98.35  E-value=1.8e-07  Score=81.94  Aligned_cols=35  Identities=34%  Similarity=0.743  Sum_probs=31.1

Q ss_pred             hhhcccccccccCCCeeeccC---ChhHHHHHhhcCCC
Q 024816           42 IPATDRVIDFGKYKGKMLGTL---PSNYLKWVSKNLRA   76 (262)
Q Consensus        42 ~~li~t~MPFGKYKGr~L~DL---Pe~YL~Wf~kkfp~   76 (262)
                      .|.+..+||||||||+.+.++   |.+||+|+++|.++
T Consensus       167 ~~~~~~~~~fGk~kg~~~~~~~~~~~~yl~wl~~~~~d  204 (219)
T PRK07983        167 RPSLLTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDD  204 (219)
T ss_pred             CCccCCCccccCccCcchhhhhhcchHHHHHHHhcccc
Confidence            466788999999999999999   89999999998654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00