Citrus Sinensis ID: 024871
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 261 | 2.2.26 [Sep-21-2011] | |||||||
| Q43814 | 375 | Ornithine carbamoyltransf | N/A | no | 0.996 | 0.693 | 0.876 | 1e-138 | |
| O50039 | 375 | Ornithine carbamoyltransf | yes | no | 1.0 | 0.696 | 0.854 | 1e-136 | |
| Q5JI16 | 315 | Ornithine carbamoyltransf | yes | no | 0.996 | 0.825 | 0.520 | 3e-78 | |
| Q51742 | 315 | Ornithine carbamoyltransf | yes | no | 0.996 | 0.825 | 0.520 | 3e-78 | |
| O93656 | 317 | Ornithine carbamoyltransf | yes | no | 0.996 | 0.820 | 0.517 | 2e-77 | |
| O58457 | 317 | Ornithine carbamoyltransf | yes | no | 0.996 | 0.820 | 0.517 | 6e-77 | |
| A3CU82 | 309 | Ornithine carbamoyltransf | yes | no | 0.980 | 0.828 | 0.501 | 3e-76 | |
| Q39Z73 | 303 | Ornithine carbamoyltransf | yes | no | 0.992 | 0.854 | 0.494 | 4e-75 | |
| Q8KDE2 | 338 | Ornithine carbamoyltransf | yes | no | 0.980 | 0.757 | 0.511 | 1e-74 | |
| Q7M8B5 | 307 | Ornithine carbamoyltransf | yes | no | 0.977 | 0.830 | 0.521 | 8e-74 |
| >sp|Q43814|OTC_PEA Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum GN=ARGF PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 228/260 (87%), Positives = 247/260 (95%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP+DIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 115 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPNDIQMGKREETRDVARVLSRYNDIIMAR 174
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK+A+VPVINGLTDYNHP QIMADALT+IEH+GR EGTKVVYVGDGNNIV
Sbjct: 175 VFSHQDILDLAKYASVPVINGLTDYNHPVQIMADALTMIEHIGRFEGTKVVYVGDGNNIV 234
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+V+PFHFVCACPKGFEPD +TVEKARKAGISKIEI++DPKE V+GADVVYSDV
Sbjct: 235 HSWLLLAAVVPFHFVCACPKGFEPDAKTVEKARKAGISKIEISHDPKEAVRGADVVYSDV 294
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAAYR++AF+GFQVD+ LM AG KA+FMHCLPAERGVEVT+ V+EAPYSIV
Sbjct: 295 WASMGQKEEAAYRREAFKGFQVDQNLMDAAGSKAFFMHCLPAERGVEVTDEVVEAPYSIV 354
Query: 241 FPQAENRMHAQNAIMLHALG 260
FPQAENRMHAQNAIMLH LG
Sbjct: 355 FPQAENRMHAQNAIMLHVLG 374
|
Pisum sativum (taxid: 3888) EC: 2EC: .EC: 1EC: .EC: 3EC: .EC: 3 |
| >sp|O50039|OTC_ARATH Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust.
Identities = 223/261 (85%), Positives = 244/261 (93%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
MSMIFAKPSMRTRVSFETGF LLGGHA+YLGP+DIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 115 MSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMAR 174
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLA +++VPV+NGLTD+NHPCQIMADALT+IEH+G++EGTKVVYVGDGNN+V
Sbjct: 175 VFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNNMV 234
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWL +ASVIPFHFVCACPKG+EPDKE V KA++AG+SKIEITNDPKE V GADVVYSDV
Sbjct: 235 HSWLELASVIPFHFVCACPKGYEPDKERVSKAKQAGLSKIEITNDPKEAVIGADVVYSDV 294
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQK+EA R++AFQGFQVDE LMKLAG KAYFMHCLPAERGVEVT GV+EAPYSIV
Sbjct: 295 WASMGQKDEAEARRKAFQGFQVDEALMKLAGQKAYFMHCLPAERGVEVTNGVVEAPYSIV 354
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LG
Sbjct: 355 FPQAENRMHAQNAIMLHLLGF 375
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|Q5JI16|OTC_PYRKO Ornithine carbamoyltransferase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=argF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 188/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTR+SFE G LGG+ +YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRISFEVGIYQLGGYGLYLNAQDLQLRRGETIADTARVLSRYVDGIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF H+D+ DLAK+A+VPVINGL+D++HPCQ +AD TI+E GR++G K+VYVGDGNN+
Sbjct: 109 VFDHKDVEDLAKYASVPVINGLSDFSHPCQALADYQTILEKKGRIQGLKIVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + + V A P+G+EPD + ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGANVVVATPEGYEPDPKVIKWAEQNAAESGGSFELLHDPVQAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFMPFQVNKELVKHAKPDYIFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+VF QAENR+HAQ A+M +G
Sbjct: 289 SVVFDQAENRLHAQKAVMALVMG 311
|
Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|Q51742|OTC_PYRFU Ornithine carbamoyltransferase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=argF PE=1 SV=6 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/263 (52%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ QAENR+HAQ A++ +G
Sbjct: 289 SVVWDQAENRLHAQKAVLALVMG 311
|
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|O93656|OTC_PYRAB Ornithine carbamoyltransferase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=argF PE=3 SV=4 | Back alignment and function description |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYDHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ +AENR+HAQ A++ LG
Sbjct: 289 SVVWDEAENRLHAQKAVLALLLG 311
|
Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|O58457|OTC_PYRHO Ornithine carbamoyltransferase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=argF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 136/263 (51%), Positives = 188/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+A+VPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYAHKDVEDLAKYASVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVC 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPDK+ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDKKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKSDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ +AENR+HAQ A++ LG
Sbjct: 289 SVVWDEAENRLHAQKAVLALLLG 311
|
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|A3CU82|OTC_METMJ Ornithine carbamoyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=argF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 129/257 (50%), Positives = 176/257 (68%), Gaps = 1/257 (0%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTRVSFE G S LGGHA++L P D+Q+G+ EE RD ARVL RY D +M R
Sbjct: 44 LGMIFEKASTRTRVSFEVGMSDLGGHALFLNPQDMQLGRGEEIRDTARVLARYVDAVMIR 103
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
+ H I + A++A VPV+NGL+D HPCQ++AD +T+ E G L G K+ +VGDGNN+
Sbjct: 104 AYSHAAIEEFARYANVPVVNGLSDRLHPCQVLADIMTLSERFGDLHGLKLAWVGDGNNVC 163
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
+SWLL +++ A P + P E V++AR AG K+ + DP E V+ ADV+Y+D+
Sbjct: 164 NSWLLSSALTGMEIAVASPPRYRPRDEIVDQARAAG-GKVTVVTDPDEAVRDADVLYTDI 222
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMG ++E A R QA +G+ +D L+ A P A MHCLPA RG E+T+ V+E P SIV
Sbjct: 223 WVSMGDEQERAERLQALKGYTIDSRLLAQASPDALVMHCLPAHRGEEITDEVMEGPQSIV 282
Query: 241 FPQAENRMHAQNAIMLH 257
+ QAENR+HAQ A+++
Sbjct: 283 WDQAENRLHAQKALLVR 299
|
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|Q39Z73|OTC_GEOMG Ornithine carbamoyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=argF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 178/259 (68%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR+SFE G LG H +++ QMG+ E RD ARV+ RY D +M R
Sbjct: 44 VALIFEKSSTRTRISFEVGVHQLGAHPLFISSATSQMGRGEPVRDTARVMARYCDGVMIR 103
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
+G + + + A++++VPVINGLTD HPCQIMAD T+IEH G+ +G K +VGDGNN+
Sbjct: 104 TYGQEIVEEFARYSSVPVINGLTDLFHPCQIMADLFTVIEHKGKYDGLKFAWVGDGNNMA 163
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
++W+ A+++ F ACP+G+EPD+ + A+K S I IT DPKE V+ ADVV +DV
Sbjct: 164 NTWIEAAAILGFDLALACPEGYEPDRTVWDWAQKKATSSITITRDPKEAVRDADVVNTDV 223
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQ++E R+ AF+G+ +D+ L+ LA P +HCLPA RG E+T+ VIE P S V
Sbjct: 224 WASMGQEQEQKVREVAFKGYCLDDDLVALAKPDCMVLHCLPAHRGEEITDSVIEGPRSAV 283
Query: 241 FPQAENRMHAQNAIMLHAL 259
+ +AENR+H Q AIM L
Sbjct: 284 WDEAENRLHVQKAIMASLL 302
|
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|Q8KDE2|OTC_CHLTE Ornithine carbamoyltransferase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=argF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 179/256 (69%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS+RTRVSFE G LGGHAI L I +G+RE D AR+L RYND I+AR
Sbjct: 57 VAMIFNKPSLRTRVSFELGVYELGGHAISLEGKSIGVGERESIEDIARLLSRYNDAIVAR 116
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
+ H+ I LAK A +PVIN LTD +HPCQ++ADA T+ E + KVV+VGDGNN+
Sbjct: 117 LHEHEIIETLAKHADIPVINALTDLSHPCQVLADAFTLYEKGLWRDDIKVVFVGDGNNVA 176
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
+SW+ +A ++PFHFV ACP+G+ PD+ +++AR IEI +DP E + ADV+Y+DV
Sbjct: 177 NSWIELAGILPFHFVLACPEGYLPDETLLKQARSNAKGTIEILHDPMEAAKQADVLYTDV 236
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMGQ+EE A R +AF FQ++ ++ A P A MHC+PA RG E++ V++ P SI+
Sbjct: 237 WTSMGQEEEMAERLKAFAPFQINAKMVAEAKPSAVIMHCMPAHRGQEISAEVMDGPQSII 296
Query: 241 FPQAENRMHAQNAIML 256
+AENR+H Q A+M+
Sbjct: 297 IDEAENRLHVQKALMV 312
|
Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|Q7M8B5|OTC_WOLSU Ornithine carbamoyltransferase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=argF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 180/259 (69%), Gaps = 4/259 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTRVSFE+G LGG ++L DIQ+G+ E +D ARV+ R D++M R
Sbjct: 43 LGMIFEKSSTRTRVSFESGIYQLGGMGMFLSNRDIQLGRGEPMKDTARVISRMVDMVMIR 102
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
GH+ I + AK++ VPV+NGLTD HP Q+MAD LT++E G+ + V YVGDGNN+
Sbjct: 103 TSGHERIEEFAKYSQVPVVNGLTDSYHPVQLMADYLTMMEQ-GKDQNPIVAYVGDGNNMT 161
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVVY 177
HSWL++AS + F A P+G+EP+ + E+A+K A +S KI +TNDPK V+GADVV
Sbjct: 162 HSWLMLASKLGFELRVATPRGYEPNLKIFEEAQKIASLSGAKITLTNDPKRAVEGADVVT 221
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D WASMGQ+EE R + FQG+ VD LM LA A F+HCLPA RG EV+E V+E P
Sbjct: 222 TDTWASMGQEEEKEKRARDFQGYCVDSALMGLAKSDAIFLHCLPAYRGQEVSEEVLEGPQ 281
Query: 238 SIVFPQAENRMHAQNAIML 256
S++F +AENR+H Q IM+
Sbjct: 282 SLIFDEAENRLHVQKGIMV 300
|
Wolinella succinogenes (taxid: 844) EC: 2 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 261 | ||||||
| 224085690 | 374 | predicted protein [Populus trichocarpa] | 1.0 | 0.697 | 0.915 | 1e-141 | |
| 118482555 | 378 | unknown [Populus trichocarpa] | 1.0 | 0.690 | 0.915 | 1e-141 | |
| 225458227 | 378 | PREDICTED: ornithine carbamoyltransferas | 1.0 | 0.690 | 0.892 | 1e-139 | |
| 255538702 | 378 | ornithine carbamoyltransferase, putative | 1.0 | 0.690 | 0.896 | 1e-139 | |
| 388505998 | 369 | unknown [Medicago truncatula] | 0.996 | 0.704 | 0.903 | 1e-139 | |
| 222154048 | 369 | plastid ornithine carbamoyltransferase [ | 0.996 | 0.704 | 0.9 | 1e-138 | |
| 449460249 | 378 | PREDICTED: ornithine carbamoyltransferas | 1.0 | 0.690 | 0.881 | 1e-138 | |
| 307136374 | 378 | ornithine carbamoyltransferase [Cucumis | 1.0 | 0.690 | 0.877 | 1e-138 | |
| 449476834 | 378 | PREDICTED: ornithine carbamoyltransferas | 1.0 | 0.690 | 0.877 | 1e-137 | |
| 356510161 | 358 | PREDICTED: ornithine carbamoyltransferas | 0.996 | 0.726 | 0.880 | 1e-137 |
| >gi|224085690|ref|XP_002307666.1| predicted protein [Populus trichocarpa] gi|222857115|gb|EEE94662.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/261 (91%), Positives = 251/261 (96%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPDDIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 114 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMAR 173
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK ATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV
Sbjct: 174 VFAHQDILDLAKHATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 233
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+VIPFHFVCACPKGFEPD +TV+KA++AGISKIEITNDP+E V+GADVVYSDV
Sbjct: 234 HSWLLLAAVIPFHFVCACPKGFEPDAKTVQKAQQAGISKIEITNDPQEAVRGADVVYSDV 293
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAA+R+Q FQGFQVDE LMKLAGPKAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 294 WASMGQKEEAAHRRQVFQGFQVDENLMKLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 353
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLHALGL
Sbjct: 354 FPQAENRMHAQNAIMLHALGL 374
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118482555|gb|ABK93198.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/261 (91%), Positives = 251/261 (96%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPDDIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK ATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV
Sbjct: 178 VFAHQDILDLAKHATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+VIPFHFVCACPKGFEPD +TV+KA++AGISKIEITNDP+E V+GADVVYSDV
Sbjct: 238 HSWLLLAAVIPFHFVCACPKGFEPDAKTVQKAQQAGISKIEITNDPQEAVRGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAA+R+Q FQGFQVDE LMKLAGPKAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 298 WASMGQKEEAAHRRQVFQGFQVDENLMKLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLHALGL
Sbjct: 358 FPQAENRMHAQNAIMLHALGL 378
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458227|ref|XP_002281919.1| PREDICTED: ornithine carbamoyltransferase, chloroplastic [Vitis vinifera] gi|302142520|emb|CBI19723.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/261 (89%), Positives = 251/261 (96%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHA+YLGPDDIQMGKREETRD ARVL YNDIIMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHALYLGPDDIQMGKREETRDVARVLSCYNDIIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK+ATVPVINGLTDYNHPCQIMADALTIIEH+G+LEGTKVVYVGDGNNIV
Sbjct: 178 VFAHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+V+PFHFVCACPKGFEPD++TV+KA++AGISKIEITNDPKE V+GADVVYSDV
Sbjct: 238 HSWLLLAAVVPFHFVCACPKGFEPDEKTVQKAQQAGISKIEITNDPKEAVRGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA+YR+Q FQGFQVDE LMKLAGPKAYFMHCLPAERGVEVT+GV+EAP SIV
Sbjct: 298 WASMGQKEEASYRRQVFQGFQVDEPLMKLAGPKAYFMHCLPAERGVEVTDGVLEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538702|ref|XP_002510416.1| ornithine carbamoyltransferase, putative [Ricinus communis] gi|223551117|gb|EEF52603.1| ornithine carbamoyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 234/261 (89%), Positives = 250/261 (95%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPDDIQMGKREET D ARVL RYND+IMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDDIQMGKREETCDVARVLSRYNDMIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK+ATVPV+NGLTDYNHPCQIMADALTIIEH+G+LEGTKVVYVGDGNNIV
Sbjct: 178 VFSHQDILDLAKYATVPVVNGLTDYNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+ASVIPFHF+C CPKGFEPD ETV+KA++AGISKIEITNDPKE V+GADVVYSDV
Sbjct: 238 HSWLLLASVIPFHFICVCPKGFEPDAETVKKAQEAGISKIEITNDPKEAVRGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAA+R++AFQGFQVDE LMKLAGPKAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 298 WASMGQKEEAAHRRKAFQGFQVDEDLMKLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505998|gb|AFK41065.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/260 (90%), Positives = 246/260 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 109 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDVARVLSRYNDIIMAR 168
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK+ATVPVINGLTDYNHPCQIMADALT+IEHVGR EGTKVVYVGDGNNIV
Sbjct: 169 VFSHQDILDLAKYATVPVINGLTDYNHPCQIMADALTMIEHVGRFEGTKVVYVGDGNNIV 228
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLLMA+VIPFHFVCACPKGFEPD +TVE+ARKAGISKIEITNDPKE V+GADVVYSDV
Sbjct: 229 HSWLLMAAVIPFHFVCACPKGFEPDAKTVERARKAGISKIEITNDPKEAVKGADVVYSDV 288
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAAYR+Q F+ FQVD+ LM AG KA+FMHCLPAERGVEVTE V+EAPYSIV
Sbjct: 289 WASMGQKEEAAYRRQVFKEFQVDQSLMDAAGSKAFFMHCLPAERGVEVTEQVVEAPYSIV 348
Query: 241 FPQAENRMHAQNAIMLHALG 260
FPQAENRMHAQNAIMLH LG
Sbjct: 349 FPQAENRMHAQNAIMLHVLG 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222154048|gb|ACM47214.1| plastid ornithine carbamoyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 234/260 (90%), Positives = 245/260 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQM KREETRD ARVL RYNDII+AR
Sbjct: 109 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMDKREETRDVARVLSRYNDIILAR 168
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLAK+ATVPVINGLTDYNHPCQIMADALT+IEHVGR EGTKVVYVGDGNNIV
Sbjct: 169 VFSHQDILDLAKYATVPVINGLTDYNHPCQIMADALTMIEHVGRFEGTKVVYVGDGNNIV 228
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLLMA+VIPFHFVCACPKGFEPD +TVEKARKAGISKIEITNDPKE V+GADVVYSDV
Sbjct: 229 HSWLLMAAVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDV 288
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEAAYR+Q F+ FQVD+ LM AG KA+FMHCLPAERGVEVTE V+EAPYSIV
Sbjct: 289 WASMGQKEEAAYRRQVFKEFQVDQSLMDAAGSKAFFMHCLPAERGVEVTEQVVEAPYSIV 348
Query: 241 FPQAENRMHAQNAIMLHALG 260
FPQAENRMHAQNAIMLH LG
Sbjct: 349 FPQAENRMHAQNAIMLHVLG 368
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460249|ref|XP_004147858.1| PREDICTED: ornithine carbamoyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/261 (88%), Positives = 247/261 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPD IQMGKREETRD ARVL RYND+IMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDTIQMGKREETRDIARVLSRYNDVIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VFGHQDILDLAK++TVPVINGLTDYNHPCQ+MADALT+IEH+G+LEGTKVVYVGDGNN+V
Sbjct: 178 VFGHQDILDLAKYSTVPVINGLTDYNHPCQVMADALTMIEHIGKLEGTKVVYVGDGNNMV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+ASV+P HFVCACPKGFEPDK TVEKAR+AG+SKIEITNDPKE V+GADVVYSDV
Sbjct: 238 HSWLLLASVVPLHFVCACPKGFEPDKNTVEKARQAGVSKIEITNDPKEAVKGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA YR+Q FQGFQV+E LM LAG KAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 298 WASMGQKEEADYRRQVFQGFQVNEELMNLAGSKAYFMHCLPAERGVEVTDGVIEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136374|gb|ADN34186.1| ornithine carbamoyltransferase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/261 (87%), Positives = 247/261 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPD IQMGKREETRD ARVL RYND+IMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDTIQMGKREETRDIARVLSRYNDVIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VFGHQDILDLAK++TVPVINGLTDYNHPCQ+MADALT+IEH+G+LEG KVVYVGDGNN+V
Sbjct: 178 VFGHQDILDLAKYSTVPVINGLTDYNHPCQVMADALTMIEHIGKLEGIKVVYVGDGNNMV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+ASV+P HFVCACPKGFEPDK TVEKAR+AG+SKIEIT+DPKE V+GADVVYSDV
Sbjct: 238 HSWLLLASVVPLHFVCACPKGFEPDKNTVEKARQAGVSKIEITHDPKEAVKGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA YR+Q FQGFQV+E LM LAGPKAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 298 WASMGQKEEADYRRQVFQGFQVNEELMNLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476834|ref|XP_004154848.1| PREDICTED: ornithine carbamoyltransferase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/261 (87%), Positives = 247/261 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIFAKPSMRTRVSFETGF LLGGHAIYLGPD IQMGKREETRD ARVL RYND+IMAR
Sbjct: 118 MAMIFAKPSMRTRVSFETGFFLLGGHAIYLGPDTIQMGKREETRDIARVLSRYNDVIMAR 177
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VFGHQDILDLAK++TVPVINGLTDYNHPCQ+MADALT+IE++G+LEGTKVVYVGDGNN+V
Sbjct: 178 VFGHQDILDLAKYSTVPVINGLTDYNHPCQVMADALTMIEYIGKLEGTKVVYVGDGNNMV 237
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+ASV+P HFVCACPKGFEPDK TVEKAR+AG+SKIEITNDPKE V+GADVVYSDV
Sbjct: 238 HSWLLLASVVPLHFVCACPKGFEPDKNTVEKARQAGVSKIEITNDPKEAVKGADVVYSDV 297
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA YR+Q FQGFQV+E LM LAG KAYFMHCLPAERGVEVT+GVIEAP SIV
Sbjct: 298 WASMGQKEEADYRRQVFQGFQVNEELMNLAGSKAYFMHCLPAERGVEVTDGVIEAPNSIV 357
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510161|ref|XP_003523808.1| PREDICTED: ornithine carbamoyltransferase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/260 (88%), Positives = 245/260 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIF KPSMRTRVSFETGF+LLGGHAIYLGPDDIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 98 MAMIFTKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDIARVLSRYNDIIMAR 157
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF H+DILDLAK+ATVPVINGLTDYNHPCQIMADALT++EH+GR EGTKVVYVGDGNNIV
Sbjct: 158 VFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYVGDGNNIV 217
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLLMASVIPFHFVCACPKGFEPD +TVEKARKAGISKIEITNDPKE V+GADVVYSDV
Sbjct: 218 HSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDV 277
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA YR+QAF+GFQV++ LM LAG KA+FMHCLPAERGVEVT+ VIEAP SIV
Sbjct: 278 WASMGQKEEAEYRRQAFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIV 337
Query: 241 FPQAENRMHAQNAIMLHALG 260
FPQAENRMHAQNA+MLH L
Sbjct: 338 FPQAENRMHAQNAVMLHVLA 357
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 261 | ||||||
| TAIR|locus:2018467 | 375 | OTC "ornithine carbamoyltransf | 0.996 | 0.693 | 0.857 | 1.1e-121 | |
| TIGR_CMR|GSU_0152 | 303 | GSU_0152 "ornithine carbamoylt | 0.977 | 0.841 | 0.490 | 1.7e-66 | |
| TIGR_CMR|CHY_2261 | 311 | CHY_2261 "ornithine carbamoylt | 0.996 | 0.836 | 0.498 | 1.6e-63 | |
| TIGR_CMR|DET_1394 | 311 | DET_1394 "ornithine carbamoylt | 0.996 | 0.836 | 0.467 | 3.1e-60 | |
| TIGR_CMR|BA_4351 | 316 | BA_4351 "ornithine carbamoyltr | 0.969 | 0.800 | 0.475 | 6.4e-60 | |
| TIGR_CMR|SPO_0963 | 308 | SPO_0963 "ornithine carbamoylt | 0.992 | 0.840 | 0.475 | 1.5e-58 | |
| UNIPROTKB|F1MNG5 | 354 | OTC "Ornithine carbamoyltransf | 0.988 | 0.728 | 0.465 | 8.4e-58 | |
| UNIPROTKB|Q9N1U7 | 354 | OTC "Ornithine carbamoyltransf | 0.988 | 0.728 | 0.461 | 5.9e-57 | |
| UNIPROTKB|E2RD27 | 354 | OTC "Uncharacterized protein" | 0.988 | 0.728 | 0.461 | 5.9e-57 | |
| MGI|MGI:97448 | 354 | Otc "ornithine transcarbamylas | 0.988 | 0.728 | 0.458 | 5.9e-57 |
| TAIR|locus:2018467 OTC "ornithine carbamoyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 223/260 (85%), Positives = 244/260 (93%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
MSMIFAKPSMRTRVSFETGF LLGGHA+YLGP+DIQMGKREETRD ARVL RYNDIIMAR
Sbjct: 115 MSMIFAKPSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDIIMAR 174
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQDILDLA +++VPV+NGLTD+NHPCQIMADALT+IEH+G++EGTKVVYVGDGNN+V
Sbjct: 175 VFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEGTKVVYVGDGNNMV 234
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWL +ASVIPFHFVCACPKG+EPDKE V KA++AG+SKIEITNDPKE V GADVVYSDV
Sbjct: 235 HSWLELASVIPFHFVCACPKGYEPDKERVSKAKQAGLSKIEITNDPKEAVIGADVVYSDV 294
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQK+EA R++AFQGFQVDE LMKLAG KAYFMHCLPAERGVEVT GV+EAPYSIV
Sbjct: 295 WASMGQKDEAEARRKAFQGFQVDEALMKLAGQKAYFMHCLPAERGVEVTNGVVEAPYSIV 354
Query: 241 FPQAENRMHAQNAIMLHALG 260
FPQAENRMHAQNAIMLH LG
Sbjct: 355 FPQAENRMHAQNAIMLHLLG 374
|
|
| TIGR_CMR|GSU_0152 GSU_0152 "ornithine carbamoyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 125/255 (49%), Positives = 177/255 (69%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTRVSFE G + LG H +++ QMG+ E +D ARV+ RY D +M R
Sbjct: 44 VALIFEKSSTRTRVSFEVGVAQLGAHPLFISSATSQMGRGEPIKDTARVMARYCDGVMIR 103
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
+G + + + A++++VPVINGLTD HPCQIMAD T+IE+ G +G K +VGDGNN+
Sbjct: 104 TYGQEIVEEFARYSSVPVINGLTDLFHPCQIMADLFTVIEYKGGYQGLKFAWVGDGNNMA 163
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
++W+ A+++ F ACP G+EPD++ + A++ S I IT DP+E V+ ADVV +DV
Sbjct: 164 NTWIEAAAILGFDLALACPTGYEPDRQVWDWAQQRATSSITITEDPEEAVRDADVVNTDV 223
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQ++E R+ AFQG+ +D+ L+ LA P +HCLPA RG E+T+ VIE P S V
Sbjct: 224 WASMGQEQEQKEREAAFQGYCLDDALVALARPDCMVLHCLPAHRGEEITDSVIEGPRSAV 283
Query: 241 FPQAENRMHAQNAIM 255
+ +AENR+H Q AIM
Sbjct: 284 WDEAENRLHIQKAIM 298
|
|
| TIGR_CMR|CHY_2261 CHY_2261 "ornithine carbamoyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 131/263 (49%), Positives = 175/263 (66%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF+K S RTRVSFE G LGG+ +++ D Q+ + E D ARVL R D IM R
Sbjct: 49 LAMIFSKNSTRTRVSFEVGMVQLGGYPLFITATDSQLSRGEPIADTARVLSRMVDGIMIR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
+ H ++ +LA +A VPVINGLTDY HPCQIMAD LTI EH G+L G KV +VGDGNN+
Sbjct: 109 TYSHSEVEELAYYADVPVINGLTDYEHPCQIMADLLTIKEHKGQLRGLKVAWVGDGNNVC 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKET---VEKARKAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ + A P G+EPD++ +K +K+ +T+DP E V GADVV
Sbjct: 169 HSLMIGAAKVGMEVAVATPPGYEPDQKVSLIAQKETSRWGTKLLLTHDPVEAVTGADVVV 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ E+A R + F+ +QV+ L+ A F+HCLPA RG EVT VI+ +
Sbjct: 229 TDVWASMGQEAESAERVKVFEPYQVNGELVSHAKQDFIFLHCLPAHRGEEVTAEVIDGEH 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+VF +AENR+HAQ AI+ LG
Sbjct: 289 SVVFAEAENRLHAQKAILTLLLG 311
|
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| TIGR_CMR|DET_1394 DET_1394 "ornithine carbamoyltransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 123/263 (46%), Positives = 168/263 (63%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F KPS+RTRVSFE LGG A+YL P ++ +GKRE D ARVL R+ D+I R
Sbjct: 41 LALVFEKPSLRTRVSFELAMKQLGGEALYLSPAEVGLGKREPVADVARVLARFVDVIACR 100
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
FGH ++ LAK+A +PVIN L+D HPCQ +AD LTI E G L+G + Y+GDGNN
Sbjct: 101 TFGHDTLVQLAKYADIPVINALSDLEHPCQALADILTIYEKKGELKGLNLAYIGDGNNCA 160
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEITN--DPKEVVQGADVVY 177
+S LL ++ + A P+G+ DK KA+ A S E+ + D K ++GADV+Y
Sbjct: 161 NSLLLACAMTGINCRLASPEGYLVDKAIFAKAKAYAEDSGAELYSGTDLKAALRGADVIY 220
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E R + F GFQV+ L+ +A A MH LPA G EV ++E P
Sbjct: 221 TDVWTSMGQEAETEKRLKDFAGFQVNAKLVSMADKDAIIMHPLPAHYGEEVDREILECPQ 280
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S++F QAENR+HAQ A++ LG
Sbjct: 281 SVIFDQAENRLHAQKAVLRDMLG 303
|
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| TIGR_CMR|BA_4351 BA_4351 "ornithine carbamoyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 124/261 (47%), Positives = 174/261 (66%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ +IF K S RTRVSFE G LGGH ++L ++QMG+ E D A+VL Y D IM R
Sbjct: 49 LGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E +G K+ YVGDGNN+
Sbjct: 109 TFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKA----RKAGISKIEITNDPKEVVQGADVV 176
HS LL ++ + H A P G++P++E V+KA ++ G ++IEI ++P+ V AD +
Sbjct: 169 HSLLLASAKVGMHMTVATPVGYKPNEEIVKKALAIAKETG-AEIEILHNPELAVNEADFI 227
Query: 177 YSDVWASMGQK-EEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235
Y+DVW SMGQ+ EE Y FQ +Q+++ L+K A +F+HCLPA R EVT +I+
Sbjct: 228 YTDVWMSMGQEGEEEKYT--LFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDG 285
Query: 236 PYSIVFPQAENRMHAQNAIML 256
P SIVF QA NR+HAQ A+++
Sbjct: 286 PQSIVFEQAGNRLHAQKALLV 306
|
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| TIGR_CMR|SPO_0963 SPO_0963 "ornithine carbamoyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 124/261 (47%), Positives = 167/261 (63%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF KPS RTRVSF+ G +GG + L +D+Q+G E D ARVL RY D+IM R
Sbjct: 48 VALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGNDMQLGHGETIADTARVLSRYVDMIMIR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F + ++A++A VPVINGLTD +HPCQIMAD LT EH G + G KVV+ GDGNN+
Sbjct: 108 TFDESVLAEMAEYADVPVINGLTDRSHPCQIMADVLTYEEHRGPIAGKKVVWTGDGNNVC 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
S+L A F + P F+P++E + AR+ G SKI I D + V+GAD+V +D
Sbjct: 168 SSFLHAAGQFGFDLTFSGPAQFDPEEEYMGFARQKG-SKIVIERDAVKAVEGADLVVADT 226
Query: 181 WASMGQKEEAAYRKQ-AFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSI 239
W SM + A R+ + +QV+ LM+ A P A FMHCLPA R E T V++ P+S+
Sbjct: 227 WVSMHDAQSAKERRHNLLRPYQVNAELMRHAKPDALFMHCLPAHREEEATSEVMDGPHSV 286
Query: 240 VFPQAENRMHAQNAIMLHALG 260
+F +AENR+HAQ AIM LG
Sbjct: 287 IFDEAENRLHAQKAIMRWCLG 307
|
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| UNIPROTKB|F1MNG5 OTC "Ornithine carbamoyltransferase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 122/262 (46%), Positives = 165/262 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DDI +G E D ARVL D ++AR
Sbjct: 82 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTDDIHLGVNESLTDTARVLSSMTDAVLAR 141
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P++NGL+D HP QI+AD LT+ EH G L+G + ++GDGNNI+
Sbjct: 142 VYKQSDLDLLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNIL 201
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + A K +K+ +TNDP E G +V+
Sbjct: 202 HSIMMSAAKFGMHLQVATPKGYEPDPSITKMAEQYAKENGTKLSLTNDPLEAACGGNVLI 261
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMGQ+EE R QAFQG+QV K+A P F+HCLP + EV + V +P
Sbjct: 262 TDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAAPDWTFLHCLP-RKPEEVDDEVFYSPR 320
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+VFP+AENR A+M+ L
Sbjct: 321 SLVFPEAENRKWTIMAVMVSLL 342
|
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| UNIPROTKB|Q9N1U7 OTC "Ornithine carbamoyltransferase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 121/262 (46%), Positives = 164/262 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DDI +G E D ARVL D ++AR
Sbjct: 82 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTDDIHLGVNESLTDTARVLSSMTDAVLAR 141
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P++NGL+D HP QI+AD LT+ EH G L+G + ++GDGNNI+
Sbjct: 142 VYKQSDLDLLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNIL 201
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + A K +K+ +TNDP E G +V+
Sbjct: 202 HSIMMSAAKFGMHLQVATPKGYEPDPSITKMAEQYAKENGTKLSLTNDPLEAACGGNVLI 261
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMGQ+EE R QAFQG+QV K+A P F+HCLP + EV + V +P
Sbjct: 262 TDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAAPDWTFLHCLP-RKPEEVDDEVFYSPR 320
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+V P+AENR A+M+ L
Sbjct: 321 SLVSPEAENRKWTIMAVMVSLL 342
|
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| UNIPROTKB|E2RD27 OTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 121/262 (46%), Positives = 164/262 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 82 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLMDTARVLSSMTDAVLAR 141
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH G L+G + ++GDGNNI+
Sbjct: 142 VYKQSDLDILAKEASIPIINGLSDSYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNIL 201
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + A K +K+ +TNDP E +G +V+
Sbjct: 202 HSIMMSAAKFGMHLQAATPKGYEPDPSVTKLAEQYAKENGTKLSLTNDPLEAARGGNVLI 261
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMGQ+EE R QAFQG+QV K+A F+HCLP + EV + V +P
Sbjct: 262 TDTWISMGQEEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPR 320
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+VFP+AENR A+M+ L
Sbjct: 321 SLVFPEAENRKWTIMAVMVSLL 342
|
|
| MGI|MGI:97448 Otc "ornithine transcarbamylase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 120/262 (45%), Positives = 165/262 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 82 LGMIFEKRSTRTRLSTETGFALLGGHPSFLTTQDIHLGVNESLTDTARVLSSMTDAVLAR 141
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P++NGL+D HP QI+AD LT+ EH G L+G + ++GDGNNI+
Sbjct: 142 VYKQSDLDTLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNIL 201
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD V+ A K +K+ +TNDP E +G +V+
Sbjct: 202 HSIMMSAAKFGMHLQAATPKGYEPDPNIVKLAEQYAKENGTKLSMTNDPLEAARGGNVLI 261
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMGQ++E R QAFQG+QV K+A F+HCLP + EV + V +P
Sbjct: 262 TDTWISMGQEDEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPR 320
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S+VFP+AENR A+M+ L
Sbjct: 321 SLVFPEAENRKWTIMAVMVSLL 342
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A4XLM2 | OTC_CALS8 | 2, ., 1, ., 3, ., 3 | 0.4923 | 0.9770 | 0.8279 | yes | no |
| A5VNP2 | OTC_BRUO2 | 2, ., 1, ., 3, ., 3 | 0.4942 | 0.9846 | 0.8237 | yes | no |
| Q67JZ8 | OTC_SYMTH | 2, ., 1, ., 3, ., 3 | 0.5115 | 0.9693 | 0.8161 | yes | no |
| Q8TKT5 | OTC_METAC | 2, ., 1, ., 3, ., 3 | 0.4749 | 0.9885 | 0.8543 | yes | no |
| Q606D8 | OTC_METCA | 2, ., 1, ., 3, ., 3 | 0.4784 | 0.9616 | 0.8422 | yes | no |
| Q8G2L7 | OTC_BRUSU | 2, ., 1, ., 3, ., 3 | 0.4980 | 0.9846 | 0.8237 | yes | no |
| Q2FPP7 | OTC_METHJ | 2, ., 1, ., 3, ., 3 | 0.4730 | 0.9923 | 0.8576 | yes | no |
| Q3A9W4 | OTC_CARHZ | 2, ., 1, ., 3, ., 3 | 0.5019 | 0.9961 | 0.8360 | yes | no |
| Q39Z73 | OTC_GEOMG | 2, ., 1, ., 3, ., 3 | 0.4942 | 0.9923 | 0.8547 | yes | no |
| O29013 | OTC_ARCFU | 2, ., 1, ., 3, ., 3 | 0.4923 | 0.9923 | 0.8436 | yes | no |
| A6QC22 | OTC_SULNB | 2, ., 1, ., 3, ., 3 | 0.4846 | 0.9731 | 0.8300 | yes | no |
| O93656 | OTC_PYRAB | 2, ., 1, ., 3, ., 3 | 0.5171 | 0.9961 | 0.8201 | yes | no |
| A1VEP9 | OTC_DESVV | 2, ., 1, ., 3, ., 3 | 0.4921 | 0.9693 | 0.8433 | yes | no |
| Q5JI16 | OTC_PYRKO | 2, ., 1, ., 3, ., 3 | 0.5209 | 0.9961 | 0.8253 | yes | no |
| A2BM26 | OTC_HYPBU | 2, ., 1, ., 3, ., 3 | 0.5057 | 0.9770 | 0.8121 | yes | no |
| A5UMK3 | OTC_METS3 | 2, ., 1, ., 3, ., 3 | 0.4961 | 0.9923 | 0.8604 | yes | no |
| Q1QVM7 | OTC_CHRSD | 2, ., 1, ., 3, ., 3 | 0.4666 | 0.9616 | 0.8229 | yes | no |
| O87319 | OTC_NOSP7 | 2, ., 1, ., 3, ., 3 | 0.4732 | 0.9961 | 0.8496 | yes | no |
| Q30TL4 | OTC_SULDN | 2, ., 1, ., 3, ., 3 | 0.4826 | 0.9770 | 0.8173 | yes | no |
| Q8KDE2 | OTC_CHLTE | 2, ., 1, ., 3, ., 3 | 0.5117 | 0.9808 | 0.7573 | yes | no |
| Q7U5V5 | OTC_SYNPX | 2, ., 1, ., 3, ., 3 | 0.4809 | 0.9961 | 0.8176 | yes | no |
| A1WUZ6 | OTC_HALHL | 2, ., 1, ., 3, ., 3 | 0.4666 | 0.9616 | 0.8366 | yes | no |
| O58457 | OTC_PYRHO | 2, ., 1, ., 3, ., 3 | 0.5171 | 0.9961 | 0.8201 | yes | no |
| Q74GU2 | OTC_GEOSL | 2, ., 1, ., 3, ., 3 | 0.4901 | 0.9770 | 0.8415 | yes | no |
| A3CU82 | OTC_METMJ | 2, ., 1, ., 3, ., 3 | 0.5019 | 0.9808 | 0.8284 | yes | no |
| A1ATU5 | OTC_PELPD | 2, ., 1, ., 3, ., 3 | 0.4961 | 0.9961 | 0.8524 | yes | no |
| A7ZCL8 | OTC_CAMC1 | 2, ., 1, ., 3, ., 3 | 0.5115 | 0.9655 | 0.8262 | yes | no |
| O27495 | OTC_METTH | 2, ., 1, ., 3, ., 3 | 0.5057 | 0.9923 | 0.8604 | yes | no |
| Q2LT98 | OTC_SYNAS | 2, ., 1, ., 3, ., 3 | 0.4862 | 0.9770 | 0.8443 | yes | no |
| Q8Q0J1 | OTC_METMA | 2, ., 1, ., 3, ., 3 | 0.4864 | 0.9885 | 0.8543 | yes | no |
| A6Q1W6 | OTC_NITSB | 2, ., 1, ., 3, ., 3 | 0.5096 | 0.9770 | 0.8252 | yes | no |
| O50039 | OTC_ARATH | 2, ., 1, ., 3, ., 3 | 0.8544 | 1.0 | 0.696 | yes | no |
| Q7V8G9 | OTC_PROMM | 2, ., 1, ., 3, ., 3 | 0.4618 | 0.9961 | 0.8176 | yes | no |
| A5V656 | OTC_SPHWW | 2, ., 1, ., 3, ., 3 | 0.5 | 0.9885 | 0.8349 | yes | no |
| Q18E28 | OTC_HALWD | 2, ., 1, ., 3, ., 3 | 0.4749 | 0.9808 | 0.8533 | yes | no |
| Q9YAE7 | OTC_AERPE | 2, ., 1, ., 3, ., 3 | 0.4787 | 0.9770 | 0.8121 | yes | no |
| B7GM02 | OTC_ANOFW | 2, ., 1, ., 3, ., 3 | 0.5152 | 0.9923 | 0.8248 | yes | no |
| A0RR73 | OTC_CAMFF | 2, ., 1, ., 3, ., 3 | 0.4903 | 0.9808 | 0.8284 | yes | no |
| Q6L135 | OTC_PICTO | 2, ., 1, ., 3, ., 3 | 0.4790 | 0.9961 | 0.8637 | yes | no |
| Q465R0 | OTC_METBF | 2, ., 1, ., 3, ., 3 | 0.4749 | 0.9885 | 0.8543 | yes | no |
| Q6AR58 | OTC_DESPS | 2, ., 1, ., 3, ., 3 | 0.4576 | 0.9961 | 0.8580 | yes | no |
| Q7M8B5 | OTC_WOLSU | 2, ., 1, ., 3, ., 3 | 0.5212 | 0.9770 | 0.8306 | yes | no |
| Q72D35 | OTC_DESVH | 2, ., 1, ., 3, ., 3 | 0.4921 | 0.9693 | 0.8433 | yes | no |
| Q3A1V3 | OTC_PELCD | 2, ., 1, ., 3, ., 3 | 0.4745 | 0.9731 | 0.8410 | yes | no |
| A7GZL8 | OTC_CAMC5 | 2, ., 1, ., 3, ., 3 | 0.5057 | 0.9693 | 0.8322 | yes | no |
| Q30YB7 | OTC_DESDG | 2, ., 1, ., 3, ., 3 | 0.5217 | 0.9655 | 0.84 | yes | no |
| Q8ET05 | OTC_OCEIH | 2, ., 1, ., 3, ., 3 | 0.5232 | 0.9770 | 0.7919 | yes | no |
| Q51742 | OTC_PYRFU | 2, ., 1, ., 3, ., 3 | 0.5209 | 0.9961 | 0.8253 | yes | no |
| Q43814 | OTC_PEA | 2, ., 1, ., 3, ., 3 | 0.8769 | 0.9961 | 0.6933 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.3 | 0.976 |
| 3rd Layer | 2.1.3.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.V.1402.1 | SubName- Full=Putative uncharacterized protein; (326 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_2320006 | hypothetical protein (482 aa) | • | • | • | • | • | 0.998 | |||
 | gw1.X.3427.1 | hypothetical protein (424 aa) | • | • | • | • | 0.997 | ||||
 | grail3.0090013702 | argininosuccinate synthase family protein (EC-6.3.4.5) (470 aa) | • | • | • | • | 0.997 | ||||
 | fgenesh4_pg.C_scaffold_29000089 | carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC-6.3.5.5) (390 aa) | • | • | • | • | 0.990 | ||||
 | eugene3.00030549 | carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC-6.3.5.5) (429 aa) | • | • | • | • | 0.986 | ||||
 | estExt_fgenesh4_pm.C_LG_II0485 | argininosuccinate lyase (EC-4.3.2.1) (461 aa) | • | • | • | • | 0.984 | ||||
 | gw1.130.69.1 | N-acetyl-gamma-glutamyl-phosphate reductase (EC-1.2.1.38) (352 aa) | • | • | • | 0.981 | |||||
 | gw1.X.4384.1 | carbamoyl-phosphate synthase (EC-6.3.4.16) (1081 aa) | • | • | • | • | 0.979 | ||||
 | gw1.XI.2500.1 | ornithine-delta-aminotransferase (EC-2.6.1.13) (379 aa) | • | • | • | • | 0.976 | ||||
 | eugene3.00021348 | arginase (EC-3.5.3.1) (338 aa) | • | • | • | 0.965 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 261 | |||
| PLN02342 | 348 | PLN02342, PLN02342, ornithine carbamoyltransferase | 0.0 | |
| PRK00779 | 304 | PRK00779, PRK00779, ornithine carbamoyltransferase | 1e-154 | |
| COG0078 | 310 | COG0078, ArgF, Ornithine carbamoyltransferase [Ami | 1e-138 | |
| TIGR00658 | 304 | TIGR00658, orni_carb_tr, ornithine carbamoyltransf | 1e-125 | |
| PRK02102 | 331 | PRK02102, PRK02102, ornithine carbamoyltransferase | 1e-113 | |
| PRK02255 | 338 | PRK02255, PRK02255, putrescine carbamoyltransferas | 1e-101 | |
| PRK14805 | 302 | PRK14805, PRK14805, ornithine carbamoyltransferase | 4e-99 | |
| PRK04284 | 332 | PRK04284, PRK04284, ornithine carbamoyltransferase | 6e-82 | |
| PRK03515 | 336 | PRK03515, PRK03515, ornithine carbamoyltransferase | 9e-67 | |
| PRK01713 | 334 | PRK01713, PRK01713, ornithine carbamoyltransferase | 6e-62 | |
| PRK12562 | 334 | PRK12562, PRK12562, ornithine carbamoyltransferase | 1e-57 | |
| pfam00185 | 156 | pfam00185, OTCace, Aspartate/ornithine carbamoyltr | 1e-55 | |
| PRK04523 | 335 | PRK04523, PRK04523, N-acetylornithine carbamoyltra | 5e-54 | |
| pfam02729 | 140 | pfam02729, OTCace_N, Aspartate/ornithine carbamoyl | 2e-51 | |
| PRK14804 | 311 | PRK14804, PRK14804, ornithine carbamoyltransferase | 5e-50 | |
| TIGR03316 | 357 | TIGR03316, ygeW, probable carbamoyltransferase Yge | 4e-37 | |
| COG0540 | 316 | COG0540, PyrB, Aspartate carbamoyltransferase, cat | 3e-32 | |
| PRK00856 | 305 | PRK00856, pyrB, aspartate carbamoyltransferase cat | 4e-31 | |
| TIGR00670 | 301 | TIGR00670, asp_carb_tr, aspartate carbamoyltransfe | 2e-27 | |
| PLN02527 | 306 | PLN02527, PLN02527, aspartate carbamoyltransferase | 7e-24 | |
| PRK08192 | 338 | PRK08192, PRK08192, aspartate carbamoyltransferase | 2e-22 | |
| PRK11891 | 429 | PRK11891, PRK11891, aspartate carbamoyltransferase | 3e-19 | |
| PRK07200 | 395 | PRK07200, PRK07200, aspartate/ornithine carbamoylt | 6e-17 | |
| PRK13814 | 310 | PRK13814, pyrB, aspartate carbamoyltransferase cat | 3e-06 |
| >gnl|CDD|177976 PLN02342, PLN02342, ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Score = 564 bits (1455), Expect = 0.0
Identities = 225/261 (86%), Positives = 246/261 (94%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
M+MIF KPSMRTRVSFETGF LLGGHA+YLGPDDIQ+GKREETRD ARVL RYNDIIMAR
Sbjct: 88 MAMIFTKPSMRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMAR 147
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF HQD+LDLA++++VPVINGLTDYNHPCQIMADALTIIEH+GRLEGTKVVYVGDGNNIV
Sbjct: 148 VFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIV 207
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
HSWLL+A+V+PFHFVCACPKG+EPD +TVEKAR AGISKIEITNDP E V+GADVVY+DV
Sbjct: 208 HSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
WASMGQKEEA RK+AFQGFQV+E LMKLAGP+AYFMHCLPAERGVEVT+GV+EAP SIV
Sbjct: 268 WASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIV 327
Query: 241 FPQAENRMHAQNAIMLHALGL 261
FPQAENRMHAQNAIMLH LG
Sbjct: 328 FPQAENRMHAQNAIMLHQLGK 348
|
Length = 348 |
| >gnl|CDD|234835 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 431 bits (1110), Expect = e-154
Identities = 152/257 (59%), Positives = 189/257 (73%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF KPS RTRVSFE G + LGGHAI+L P D Q+G+ E D ARVL RY D IM R F
Sbjct: 48 MIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTF 107
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H+ + +LA+++TVPVINGLTD +HPCQI+AD LTI EH G L+G KV +VGDGNN+ +S
Sbjct: 108 EHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANS 167
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182
LL A+++ F A PKG+EPD E VEK K + IE+T+DPKE V+GADVVY+DVW
Sbjct: 168 LLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWV 227
Query: 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFP 242
SMGQ+ EA R +AF +QV+E LM LA P A FMHCLPA RG EVT+ VI+ P S+V+
Sbjct: 228 SMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWD 287
Query: 243 QAENRMHAQNAIMLHAL 259
+AENR+HAQ A++ L
Sbjct: 288 EAENRLHAQKALLAWLL 304
|
Length = 304 |
| >gnl|CDD|223156 COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 391 bits (1008), Expect = e-138
Identities = 147/262 (56%), Positives = 183/262 (69%), Gaps = 4/262 (1%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTRVSFE + LGGHAIYLGP D Q+G+ E +D ARVL R D IM R F
Sbjct: 49 LIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGF 108
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H+ + +LAK++ VPVINGLTD HPCQ +AD +TI EH G L+G K+ YVGDGNN+ +S
Sbjct: 109 SHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANS 168
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYSD 179
LL A+ + A PKG+EPD E VEKA++ KI +T DP+E V+GADVVY+D
Sbjct: 169 LLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTD 228
Query: 180 VWASMGQKEEAAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYS 238
VW SMG++ EA R+ AF +QV+E LM LAGP A FMHCLPA RG EVT+ V E P S
Sbjct: 229 VWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPAS 288
Query: 239 IVFPQAENRMHAQNAIMLHALG 260
+VF +AENR+H Q A++ LG
Sbjct: 289 VVFDEAENRLHTQKAVLAALLG 310
|
Length = 310 |
| >gnl|CDD|129743 TIGR00658, orni_carb_tr, ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Score = 357 bits (917), Expect = e-125
Identities = 147/263 (55%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF KPS RTRVSFE LGGH +YL P+D+Q+G+ E +D ARVL RY D IMAR
Sbjct: 42 LALIFEKPSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMAR 101
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ +LAK+A+VPVINGLTD HPCQ +AD LTIIEH G+L+G KVVYVGDGNN+
Sbjct: 102 VYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVC 161
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADVVY 177
+S +L + + V A P+G+EPD + V+KA++ +E+T+DP E V+GADV+Y
Sbjct: 162 NSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIY 221
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMG++++ R + F+ +QV+E LM+LA P+ FMHCLPA RG EVT+ VIE P+
Sbjct: 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGPH 281
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
SIVF QAENR+HAQ A+M+ LG
Sbjct: 282 SIVFDQAENRLHAQKAVMVALLG 304
|
This family of ornithine carbamoyltransferases (OTCase) is in a superfamily with the related enzyme aspartate carbamoyltransferase. Most known examples are anabolic, playing a role in arginine biosynthesis, but some are catabolic. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily [Amino acid biosynthesis, Glutamate family]. Length = 304 |
| >gnl|CDD|179366 PRK02102, PRK02102, ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-113
Identities = 126/283 (44%), Positives = 172/283 (60%), Gaps = 24/283 (8%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE LG H YLGP+D Q+GK+E D ARVL R D I R
Sbjct: 49 IALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
F + + +LAK++ VPV NGLTD HP Q++AD +T+ EH G L+G K+ YVGDG NN+
Sbjct: 109 GFKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNM 168
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGISKIEITNDPKEVVQGADV 175
+S ++ + + PK P++E V AR+ G +KI IT DP+E V+GADV
Sbjct: 169 ANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETG-AKITITEDPEEAVKGADV 227
Query: 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE----------- 223
+Y+DVW SMG+++E R + + +QV+ LMK G P FMHCLPA
Sbjct: 228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEI 287
Query: 224 ------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G+EVT+ V E+ YSIVF +AENRMH A+M+ LG
Sbjct: 288 AEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLG 330
|
Length = 331 |
| >gnl|CDD|235017 PRK02255, PRK02255, putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = e-101
Identities = 123/261 (47%), Positives = 164/261 (62%), Gaps = 8/261 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET + LGGHA YL P IQ+G E D ARVL R DIIMARV
Sbjct: 47 MIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVD 106
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
HQ +++LAK+ATVPVING++DYNHP Q + D T+IEH+ +LE KVV+VGD +
Sbjct: 107 RHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQV 166
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVV 176
S + +A+ + FV PKG++ +E + A + +S + +T+D E V+ AD V
Sbjct: 167 CVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFV 226
Query: 177 YSDVWASM-GQKEEAAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + R F +QV LM AGP A FMHCLPA RG EVT+ V++
Sbjct: 227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDEVMD 286
Query: 235 APYSIVFPQAENRMHAQNAIM 255
+P SI F +AENR+ A A++
Sbjct: 287 SPRSICFDEAENRLTAIRALL 307
|
Length = 338 |
| >gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 4e-99
Identities = 118/262 (45%), Positives = 160/262 (61%), Gaps = 7/262 (2%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
M+F KPS+RTRVSF+ G + LGGH +YL + +GKRE D A L + D I+ARVF
Sbjct: 43 MLFEKPSLRTRVSFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVF 102
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHS 122
H I LA+ +VPVIN L D HPCQ +AD LT+ E G + K+ YVGDGNN+ HS
Sbjct: 103 SHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHS 162
Query: 123 WLLMASVIPFHFVCACPKGFEPDKETV----EKARKAGISKIEITNDPKEVVQGADVVYS 178
+ A+++ CP G PD + V E A K+G K+ +T+D E ++G D +Y+
Sbjct: 163 LMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSG-GKLVLTSD-IEAIEGHDAIYT 220
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYS 238
D W SMG A K F +QV++ LM+ AG + MHC PA RGVE+T V++ S
Sbjct: 221 DTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGEGS 279
Query: 239 IVFPQAENRMHAQNAIMLHALG 260
++ QAENRMHAQNA+++ L
Sbjct: 280 LILQQAENRMHAQNAVLVTLLS 301
|
Length = 302 |
| >gnl|CDD|235269 PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 6e-82
Identities = 116/285 (40%), Positives = 164/285 (57%), Gaps = 26/285 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G H YLGP QMGK+E T+D ARVL D I R
Sbjct: 48 IALIFEKDSTRTRCAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GRLEGTKVVYVGDG-NN 118
F + + LA+++ VPV NGLTD +HP Q++AD LT EH+ + K YVGDG NN
Sbjct: 108 GFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNN 167
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGAD 174
+ ++ + A+++ F CPK PD E + K + + G KI IT+D E V+G+D
Sbjct: 168 VANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETG-GKITITDDIDEGVKGSD 226
Query: 175 VVYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
V+Y+DVW SMG+ +E R + + +QV++ +MK G P A F HCLP+
Sbjct: 227 VIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGK 286
Query: 223 -------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+ +EVT+ V E+ S+VF +AENRMH A+M+ LG
Sbjct: 287 EIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMVATLG 331
|
Length = 332 |
| >gnl|CDD|179587 PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 9e-67
Identities = 109/283 (38%), Positives = 150/283 (53%), Gaps = 26/283 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R +
Sbjct: 50 LIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY 109
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV--GRLEGTKVVYVGDG-NNI 119
G + + LA++A VPV NGLT+ HP Q++AD LT+ EH+ + Y GD NN+
Sbjct: 110 GQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNM 169
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KIEITNDPKEVVQGADVV 176
+S L A++ PK P+ V + R I +T D E V+GAD +
Sbjct: 170 GNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFI 229
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ +E A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 230 YTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKM 289
Query: 223 ------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVT+ V E+ +SIVF QAENR+H A+M+ L
Sbjct: 290 AEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVMVATL 332
|
Length = 336 |
| >gnl|CDD|167263 PRK01713, PRK01713, ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 6e-62
Identities = 112/286 (39%), Positives = 157/286 (54%), Gaps = 28/286 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 49 IALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NN 118
F + +LA++A VPV NGLTD HP Q++AD LT+IE+ + L VY+GD NN
Sbjct: 109 GFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNN 168
Query: 119 IVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIEITNDPKEVVQGAD 174
+ +S LL+ + + PK P+ VE A+++G ++I +T+D + V+G D
Sbjct: 169 MGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESG-ARITVTDDIDKAVKGVD 227
Query: 175 VVYSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA---------- 222
V++DVW SMG+ E R + +QV LMK G PK FMHCLPA
Sbjct: 228 FVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGR 287
Query: 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
G+EVTE V E+P +I F QAENRMH A+M+ +L
Sbjct: 288 QIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAVMVASL 333
|
Length = 334 |
| >gnl|CDD|105755 PRK12562, PRK12562, ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 1e-57
Identities = 116/287 (40%), Positives = 158/287 (55%), Gaps = 28/287 (9%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-GR-LEGTKVVYVGDG-N 117
G + + LA++A VPV NGLT+ HP Q++AD LT+ EH+ G+ +VY GD N
Sbjct: 108 GHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARN 167
Query: 118 NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIEITNDPKEVVQGA 173
N+ +S L A++ P+ P+ V + A+K G KI +T D V+GA
Sbjct: 168 NMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHG-GKITLTEDIAAGVKGA 226
Query: 174 DVVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA--------- 222
D +Y+DVW SMG+ KE+ A R +G+QV+ +M L G P+ F+HCLPA
Sbjct: 227 DFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLG 286
Query: 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVT+ V E+P SIVF QAENRMH A+M+ L
Sbjct: 287 KKMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333
|
Length = 334 |
| >gnl|CDD|215776 pfam00185, OTCace, Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 1e-55
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 11/159 (6%)
Query: 106 EGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKG-FEPDKETVEKARKAGISK--- 159
+G KV VGDG N + HS +L + V PKG + PD E ++KA+K +
Sbjct: 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLYPPDPELLDKAKKEALKSGGI 60
Query: 160 -IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
I +T+D +E ++GADVVY+D W ++ ++ + +QV E L+K A P A FMH
Sbjct: 61 TITVTDDLEEALKGADVVYTDRWQKEREERLEKFKPR----YQVTEELLKKAKPDAIFMH 116
Query: 219 CLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257
LPA RG E+T+ V + P S++F QAEN +H + A++
Sbjct: 117 PLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLAL 155
|
Length = 156 |
| >gnl|CDD|235304 PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 5e-54
Identities = 106/290 (36%), Positives = 143/290 (49%), Gaps = 40/290 (13%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGP----------DDIQM-GKREE-TRDAARVL 50
++F PS+RTR SFE G LGGHA+ L P M G+ EE R+ ARVL
Sbjct: 43 LVFFNPSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVL 102
Query: 51 CRYNDIIMARVFG--------HQDIL--DLAKFATVPVINGLTDYNHPCQIMADALTIIE 100
RY D+I R F QD + AK++TVPVIN T HPCQ +A AL + E
Sbjct: 103 SRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETIT-HPCQELAHALALQE 161
Query: 101 HVGR-LEGTKVV-----YVGDGNNIV-HSWLLMASVIPFHFVCACPK-GFEPDKETVEKA 152
H G L G K V + N V +S LL+A+ + CP + D+ ++ A
Sbjct: 162 HFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWA 221
Query: 153 R---KAGISKIEITNDPKEVVQGADVVYSDVWASM----GQKEEAAYRKQAFQGFQVDEF 205
+ +++D GADVVY+ W ++ + E R Q +Q F VDE
Sbjct: 222 EQNAAESGGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQ-YQHFIVDER 280
Query: 206 LMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIM 255
M L F HCLP R V+VT+ V+++P I +AENR+H Q AIM
Sbjct: 281 KMALTN-NGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIM 329
|
Length = 335 |
| >gnl|CDD|217204 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 2e-51
Identities = 49/101 (48%), Positives = 65/101 (64%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F +PS RTR+SFE LGGH IYL +GK E +D ARVL RY D I+ R
Sbjct: 40 LALLFFEPSTRTRLSFEAAAKRLGGHVIYLDASSSSLGKGESLKDTARVLSRYVDAIVIR 99
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
H + +LAK+++VPVIN D+ HP Q +AD LTI EH
Sbjct: 100 HPSHGALEELAKYSSVPVINAGDDHEHPTQALADLLTIKEH 140
|
Length = 140 |
| >gnl|CDD|173265 PRK14804, PRK14804, ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 5e-50
Identities = 94/272 (34%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRD---AARVLCRYNDII 57
++M+F K S RTRVSFE + +GGH IYL M + D AR L R +I
Sbjct: 46 LAMLFQKTSTRTRVSFEVAMTEMGGHGIYLD----WMASNFQLSDIDLEARYLSRNVSVI 101
Query: 58 MARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR--LEGTKVVYVGD 115
MAR+ H+D+L + + VPVING + HPCQ +AD +TI L ++ Y+G
Sbjct: 102 MARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGV 161
Query: 116 GNNIVHSWLLMASVIPFHFVCACPKGFEPD--KETVEKARKAGISKIEITNDPKEVVQGA 173
NN+V+S + + + + H P + + +TVE+A+K G E + + V A
Sbjct: 162 HNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWE--MNLHKAVSHA 219
Query: 174 DVVYSDVWASMGQKEEAAY------RKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVE 227
D VY+D W M + +Y R + +Q++ LM+ A MH +P G E
Sbjct: 220 DYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEKT--NAKVMHDMPIHAGYE 277
Query: 228 VTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
+T V+ + SI+F QAENR+ AQ A++L L
Sbjct: 278 ITREVVLSDRSIIFQQAENRLDAQKAVILKLL 309
|
Length = 311 |
| >gnl|CDD|213796 TIGR03316, ygeW, probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-37
Identities = 74/315 (23%), Positives = 115/315 (36%), Gaps = 67/315 (21%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDII----- 57
+F S RTR SF + +LLG L Q+ E R+ A ++ D I
Sbjct: 47 SLFRDNSTRTRFSFASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDD 106
Query: 58 MARVFGHQDILDLAKFAT-----------VPVINGLTDYNHPCQIMADALTIIEHVGRLE 106
M G+ + ++ ++N D +HP Q MAD + EH G LE
Sbjct: 107 MYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQAMADLAWLREHFGSLE 166
Query: 107 GTKVVYVGDGNNIVHSW----------------LLMASVIPFHFVCACPKGFEPDKETVE 150
K G I +W + + + A P+G++ E VE
Sbjct: 167 NLK------GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPEVVE 220
Query: 151 KARKAGIS---KIEITNDPKEVVQGADVVYSDVWASMGQKE------------------- 188
A+K N +E + AD+VY WA E
Sbjct: 221 VAKKNAAESGGSFRQVNSMEEAFKDADIVYPKSWAPYAVMEKRTELYRANDHEGLKALEK 280
Query: 189 EAAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE-RGV-----EVTEGVIEAPYSIVF 241
+ + + + E M+L +A +MHCLPA+ GV EVTEGV + +
Sbjct: 281 QCLAQNAKHKDWHCTEERMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFDKYRIATY 340
Query: 242 PQAENRMHAQNAIML 256
+A + + A++L
Sbjct: 341 KEASWKPYIIAAMIL 355
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. Length = 357 |
| >gnl|CDD|223614 COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-32
Identities = 87/279 (31%), Positives = 130/279 (46%), Gaps = 34/279 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMA 59
++ +F +PS RTR+SFET LG + + K E D R L Y D I+
Sbjct: 49 VANLFFEPSTRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVI 108
Query: 60 RVFGHQD---ILDLAKFATV-PVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYV 113
R H + LA+F+ V PVIN D + HP Q + D TI E GRL+G K+ V
Sbjct: 109 R---HPEEGAARLLAEFSGVNPVINA-GDGSHQHPTQALLDLYTIREEFGRLDGLKIAIV 164
Query: 114 GDGNN--IVHS--WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
GD + + HS L + V P+ P + +E+ + G + + +EV
Sbjct: 165 GDLKHSRVAHSNIQALKRFGAEVYLVS--PETLLPPEYILEELEEKGG-VVVEHDSDEEV 221
Query: 170 VQGADVVYSDVWASMG--QKE------EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
++ ADV+Y M QKE E + K+ ++ + + L +LA P A MH LP
Sbjct: 222 IEEADVLY------MLRVQKERFNDPEEYSKVKEYYKLYGLT--LERLAKPDAIVMHPLP 273
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R VE+ V + P S F Q +N + + A++ LG
Sbjct: 274 VNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312
|
Length = 316 |
| >gnl|CDD|234849 PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 4e-31
Identities = 91/285 (31%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR+SFE LG I + K E D R L D I+ R
Sbjct: 51 LFFEPSTRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIR-- 108
Query: 63 GHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H LA+ + VPVIN D + HP Q + D LTI E GRLEG KV VGD
Sbjct: 109 -HPQSGAARLLAESSDVPVINA-GDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGD-- 164
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS L A V + A P P+ G+ + + D
Sbjct: 165 -IKHSRVARSNIQALTRLGAEV----RLIA-PPTLLPE----------GMPEYGVHTDLD 208
Query: 168 EVVQGADVVYSDVWASMG--QKE------EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219
EV++ ADVV M QKE +Y + + + + + LA P A MH
Sbjct: 209 EVIEDADVVM------MLRVQKERMDGGLLPSYEE-YKRSYGLTAERLALAKPDAIVMHP 261
Query: 220 LPAERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
P RGVE+ V + P S++F Q N RM A++ LG
Sbjct: 262 GPVNRGVEIASDVADGPQSVIFEQVTNGVAVRM----AVLELLLG 302
|
Length = 305 |
| >gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 81/261 (31%), Positives = 112/261 (42%), Gaps = 26/261 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARV 61
+F +PS RTR+SFET LGG + + + K E D + L Y D I+ R
Sbjct: 44 NLFFEPSTRTRLSFETAMKRLGGSVVNFSDSETSSVAKGETLADTIKTLSGYVDAIVIR- 102
Query: 62 FGHQDILD---LAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H A+ + VPVIN G HP Q + D TI E GRL+G K+ VGD
Sbjct: 103 --HPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLK 160
Query: 118 N--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADV 175
VHS + P+ KE +E+ + GI K+ T +EV+ ADV
Sbjct: 161 YGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGI-KVRETESLEEVIDEADV 219
Query: 176 VYSDVWASMGQKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
+Y + QKE Y K + + ++ A MH LP R E+
Sbjct: 220 LYV----TRIQKERFPDPEEYEKVKGS-YGITLERLEAAKKGVIIMHPLP--RVDEIDPS 272
Query: 232 VIEAPYSIVFPQAEN----RM 248
V + P++ F QA N RM
Sbjct: 273 VDDTPHAKYFKQAFNGVPVRM 293
|
Aspartate transcarbamylase (ATCase) is an alternate name.PyrB encodes the catalytic chain of aspartate carbamoyltransferase, an enzyme of pyrimidine biosynthesis, which organizes into trimers. In some species, including E. coli and the Archaea but excluding Bacillus subtilis, a regulatory subunit PyrI is also present in an allosterically regulated hexameric holoenzyme. Several molecular weight classes of ATCase are described in MEDLINE:96303527 and often vary within taxa. PyrB and PyrI are fused in Thermotoga maritima.Ornithine carbamoyltransferases are in the same superfamily and form an outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 301 |
| >gnl|CDD|178142 PLN02527, PLN02527, aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 7e-24
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 21/267 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREET-RDAARVLCRYNDIIM 58
M+ +F +PS RTR+SFE+ LGG + + + ET D R + Y+DII+
Sbjct: 42 MATLFYEPSTRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIV 101
Query: 59 ARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
R F A A +PVIN G HP Q + D TI +GRL+G KV VGD
Sbjct: 102 LRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLA 161
Query: 118 N--IVHSWLLMASV---IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172
N V S + + + +FV P + + + G+ + E ++D EV
Sbjct: 162 NGRTVRSLAYLLAKYEDVKIYFV--APDVVKMKDDIKDYLTSKGV-EWEESSDLMEVASK 218
Query: 173 ADVVYSDVWASMGQKEEAAYRKQAFQG----FQVDEFLMKLAGPKAYFMHCLPAERGVEV 228
DV+Y + Q+E R ++ + VD+ +M + A MH LP R E+
Sbjct: 219 CDVLYQ----TRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP--RLDEI 272
Query: 229 TEGVIEAPYSIVFPQAENRMHAQNAIM 255
T V P + F QA+N + + A++
Sbjct: 273 TTDVDSDPRAAYFRQAKNGLFIRMALL 299
|
Length = 306 |
| >gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-22
Identities = 87/272 (31%), Positives = 122/272 (44%), Gaps = 39/272 (14%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F +PS RTRVSF F+LLGGH G + K E D ARVL Y+D+I R
Sbjct: 50 LFFEPSTRTRVSFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMR-- 107
Query: 63 GHQDILDLAKFAT---VPVINGLTDYN-HPCQIMADALTI---IEHVGR-LEGTKVVYVG 114
H D + +FA VPVING N HP Q + D TI + H GR ++G + VG
Sbjct: 108 -HPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVG 166
Query: 115 DGNN--IVHS---WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D VHS L M + F V PK + AG KI IT+ +
Sbjct: 167 DLKFGRTVHSLSRLLCMYKNVSFTLV--SPKELAMPDYVISDIENAG-HKITITDQLEGN 223
Query: 170 VQGADVVYS-----DVWASMGQKEEAAYRKQAFQGFQVDEFL-MKLAGPKAYFMHCLPAE 223
+ AD++Y + + S Q+E YR + F++++ + + MH LP +
Sbjct: 224 LDKADILYLTRIQEERFPS--QEEANKYRGK----FRLNQSIYTQHCKSNTVIMHPLPRD 277
Query: 224 RGVEVTE---GVIEAPYSIVFPQAEN----RM 248
+ E + P +F QA+N RM
Sbjct: 278 SRAQANELDNDLNSHPNLAIFRQADNGLLIRM 309
|
Length = 338 |
| >gnl|CDD|183362 PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 3e-19
Identities = 87/278 (31%), Positives = 124/278 (44%), Gaps = 30/278 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F + S RTRVSF F LGG G M K E D +RV+ Y D ++ R
Sbjct: 132 LFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIR-- 189
Query: 63 GHQDILDLAKFAT---VPVIN-GLTDYNHPCQIMADALTIIEHVGRLE----GTKVVYVG 114
H + +A+FA +PVIN G HP Q + D TI RL G + VG
Sbjct: 190 -HPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVG 248
Query: 115 D--GNNIVHSWL-LMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ 171
D VHS + L+A F P E VE+ + G IE T+D ++
Sbjct: 249 DLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNG-HVIEQTDDLAAGLR 307
Query: 172 GADVVYSDVWASMGQKEEAAYRKQAFQG----FQVDEFLMKLA-GPKAYFMHCLPAER-- 224
GADVVY A+ QKE A ++F+G FQ+++ L+ P MH LP +
Sbjct: 308 GADVVY----ATRIQKERFA--DESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRP 361
Query: 225 -GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261
+++ + P +F Q +N + + AI LG+
Sbjct: 362 GANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLGV 399
|
Length = 429 |
| >gnl|CDD|235961 PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-17
Identities = 85/302 (28%), Positives = 115/302 (38%), Gaps = 87/302 (28%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKR-----EETRDAARVLCRYNDIIM 58
+F S RTR S+ + +LLG L D+ GK E R+ A ++ M
Sbjct: 65 VFRDNSTRTRFSYASACNLLG-----LEVQDLDEGKSQIAHGETVRETANMIS-----FM 114
Query: 59 ARVFGHQDILDLAKFATV---------------------PVINGLTDYNHPCQIMADALT 97
A V G +D + + K ++N D +HP Q MAD L
Sbjct: 115 ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLH 174
Query: 98 IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASV-----IP-----------FHFVCACPKG 141
+IEH G LE K G I +W S +P A P+G
Sbjct: 175 LIEHFGGLENLK------GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEG 228
Query: 142 FEPDKETVEKARK-AGIS--KIEITNDPKEVVQGADVVYSDVWASMGQKEEAA--YRKQA 196
++ E VE A+K A S N +E + AD+VY WA EE YR
Sbjct: 229 YDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGD 288
Query: 197 FQGFQV-----------------DEFLMKL-AGPKAYFMHCLPAE-RGV-----EVTEGV 232
+G + E +MKL KA +MHCLPA+ GV EVTE V
Sbjct: 289 HEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESV 348
Query: 233 IE 234
+
Sbjct: 349 FD 350
|
Length = 395 |
| >gnl|CDD|139876 PRK13814, pyrB, aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 27/264 (10%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPD--DIQMGKREETRDAARVLCRYN-DIIMAR 60
+F +PS RTR SFE LG A+ L P+ + K E D + L + R
Sbjct: 51 LFFEPSTRTRNSFEIAAKRLG--AMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFIVR 108
Query: 61 VFGHQDILDLAK-FATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--- 115
++ +AK ++ VIN G ++ HP Q + D +TI +H V +GD
Sbjct: 109 HSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRH 168
Query: 116 ---GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG 172
N+++ + M +P P PDK G I+ + K +
Sbjct: 169 SRVANSLMDGLVTMG--VP-EIRLVGPSSLLPDK--------VGNDSIKKFTELKPSLLN 217
Query: 173 ADVVYSDVWASMGQKEEAAYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231
+DV+ + ++ + + AF+G F++ + A P A MH P R VE+
Sbjct: 218 SDVIVT--LRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSD 275
Query: 232 VIEAPYSIVFPQAENRMHAQNAIM 255
V + S++ Q N + + A++
Sbjct: 276 VADNQQSVILQQVRNGVAMRMAVL 299
|
Length = 310 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 261 | |||
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 100.0 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 100.0 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 100.0 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 100.0 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 100.0 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 100.0 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 100.0 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 100.0 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 100.0 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 100.0 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 100.0 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 100.0 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 100.0 | |
| KOG1504 | 346 | consensus Ornithine carbamoyltransferase OTC/ARG3 | 100.0 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 100.0 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 100.0 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 100.0 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 100.0 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 100.0 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 100.0 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 100.0 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 100.0 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 100.0 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 100.0 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 100.0 | |
| PF02729 | 142 | OTCace_N: Aspartate/ornithine carbamoyltransferase | 100.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.45 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.32 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.21 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.18 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.08 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.05 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.98 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.92 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 96.87 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.86 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.85 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.76 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.72 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.67 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.57 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.57 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.56 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.56 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.49 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.46 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.44 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.41 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 96.41 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.36 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.33 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.2 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.18 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.16 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.16 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.12 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.1 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.09 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.05 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.03 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.98 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.98 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.95 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.89 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.87 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.77 | |
| TIGR01278 | 511 | DPOR_BchB light-independent protochlorophyllide re | 95.75 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.71 | |
| cd01981 | 430 | Pchlide_reductase_B Pchlide_reductase_B: B protein | 95.68 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.64 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.63 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.53 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.36 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.22 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.2 | |
| PRK02910 | 519 | light-independent protochlorophyllide reductase su | 95.16 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.91 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.82 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.74 | |
| PRK07579 | 245 | hypothetical protein; Provisional | 94.7 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.69 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.67 | |
| PRK00005 | 309 | fmt methionyl-tRNA formyltransferase; Reviewed | 94.66 | |
| CHL00076 | 513 | chlB photochlorophyllide reductase subunit B | 94.65 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.54 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.53 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.51 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 94.5 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.46 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.45 | |
| TIGR00460 | 313 | fmt methionyl-tRNA formyltransferase. The top-scor | 94.44 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.42 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.38 | |
| COG0565 | 242 | LasT rRNA methylase [Translation, ribosomal struct | 94.26 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.24 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 94.18 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.09 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 94.04 | |
| cd01974 | 435 | Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitro | 93.89 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.76 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.61 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.52 | |
| PLN00106 | 323 | malate dehydrogenase | 93.34 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 93.11 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.1 | |
| PRK14476 | 455 | nitrogenase molybdenum-cofactor biosynthesis prote | 92.96 | |
| PRK06988 | 312 | putative formyltransferase; Provisional | 92.96 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 92.84 | |
| cd01968 | 410 | Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup | 92.81 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 92.66 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 92.59 | |
| cd01977 | 415 | Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: | 92.48 | |
| TIGR01283 | 456 | nifE nitrogenase molybdenum-iron cofactor biosynth | 92.44 | |
| TIGR01284 | 457 | alt_nitrog_alph nitrogenase alpha chain. This mode | 92.35 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 92.25 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 92.13 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 92.02 | |
| cd03466 | 429 | Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup | 91.84 | |
| COG4087 | 152 | Soluble P-type ATPase [General function prediction | 91.83 | |
| PLN02285 | 334 | methionyl-tRNA formyltransferase | 91.79 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 91.79 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 91.75 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 91.66 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 91.56 | |
| PLN02256 | 304 | arogenate dehydrogenase | 91.42 | |
| cd00316 | 399 | Oxidoreductase_nitrogenase The nitrogenase enzyme | 91.39 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 91.35 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 91.16 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 91.16 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 91.13 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 91.07 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 90.96 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 90.64 | |
| TIGR00050 | 233 | rRNA_methyl_1 RNA methyltransferase, TrmH family, | 90.57 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 90.55 | |
| TIGR00639 | 190 | PurN phosphoribosylglycinamide formyltransferase, | 90.34 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.24 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 90.16 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 90.14 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.87 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 89.81 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 89.69 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 89.57 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 89.52 | |
| TIGR02931 | 461 | anfK_nitrog Fe-only nitrogenase, beta subunit. Nit | 89.49 | |
| cd01965 | 428 | Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_l | 89.38 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.3 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 89.26 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 89.24 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 89.23 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 89.18 | |
| TIGR01862 | 443 | N2-ase-Ialpha nitrogenase component I, alpha chain | 89.18 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 89.06 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 88.97 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 88.62 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 88.58 | |
| PRK14478 | 475 | nitrogenase molybdenum-cofactor biosynthesis prote | 88.4 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 88.27 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 88.16 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 88.16 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 88.12 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 88.12 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 88.05 | |
| PF06506 | 176 | PrpR_N: Propionate catabolism activator; InterPro: | 87.95 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 87.95 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 87.88 | |
| TIGR01860 | 461 | VNFD nitrogenase vanadium-iron protein, alpha chai | 87.81 | |
| cd01971 | 427 | Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN | 87.73 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.68 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 87.53 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 87.3 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 87.05 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 86.78 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 86.78 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 86.67 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 86.63 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 86.41 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 86.38 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.36 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 86.26 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 86.22 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 86.17 | |
| PLN02712 | 667 | arogenate dehydrogenase | 85.97 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 85.95 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.74 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.73 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 85.65 | |
| TIGR01861 | 513 | ANFD nitrogenase iron-iron protein, alpha chain. T | 85.58 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 85.5 | |
| PLN02477 | 410 | glutamate dehydrogenase | 85.38 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 85.23 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 85.17 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.15 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 85.14 | |
| PRK10433 | 228 | putative RNA methyltransferase; Provisional | 85.09 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 85.06 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.03 | |
| PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; | 84.95 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 84.91 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 84.91 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 84.83 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 84.78 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 84.44 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 84.04 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 84.01 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 83.99 | |
| COG0223 | 307 | Fmt Methionyl-tRNA formyltransferase [Translation, | 83.71 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.71 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 83.71 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 83.43 | |
| PLN02602 | 350 | lactate dehydrogenase | 83.3 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 83.22 | |
| cd01966 | 417 | Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup o | 83.21 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 83.18 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 83.16 | |
| cd06388 | 371 | PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin | 83.11 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 83.08 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 82.96 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 82.76 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 82.23 | |
| cd06392 | 400 | PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v | 82.05 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 81.96 | |
| PRK15114 | 245 | tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr | 81.91 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 81.8 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 81.56 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 81.06 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 80.96 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 80.95 | |
| cd01972 | 426 | Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE | 80.94 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 80.77 | |
| TIGR01282 | 466 | nifD nitrogenase molybdenum-iron protein alpha cha | 80.72 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 80.54 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 80.13 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 80.09 |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-97 Score=664.22 Aligned_cols=259 Identities=57% Similarity=0.932 Sum_probs=248.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+||+|++||||||+|||.||.+|||++++++++++|+++|||++||+||||+|+|+|++|++.|..++++|++++|||||
T Consensus 47 laliFeK~STRTR~SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VPViN 126 (310)
T COG0078 47 LALIFEKTSTRTRVSFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAKYSGVPVIN 126 (310)
T ss_pred EEEEecCCCchhhhhHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHHhCCCceEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g 156 (261)
|++|.+||||+|+|++||+|++|.++|+|++||||+|||+|||+.+++++|+++.+++|++|+|+++++++|++ +|
T Consensus 127 gLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g 206 (310)
T COG0078 127 GLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESG 206 (310)
T ss_pred ccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875 34
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhh-cCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~-~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++++++|+++|+++|||||||+|.||||+.+..+++..+ .+||||+++|+.++++++||||||++||+||+++|+++
T Consensus 207 -~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg 285 (310)
T COG0078 207 -GKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEG 285 (310)
T ss_pred -CeEEEecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHhCC
Confidence 6899999999999999999999999999988754444445 55999999999999999999999999999999999999
Q ss_pred CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 236 PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 236 ~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+|++|+|||||+|+|||+|+++||
T Consensus 286 ~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 286 PASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred CceeeeehhhhhHHHHHHHHHHhhC
Confidence 9999999999999999999999986
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-91 Score=649.56 Aligned_cols=261 Identities=86% Similarity=1.371 Sum_probs=252.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++||++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 88 va~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~~~~~~~la~~~~vPVIN 167 (348)
T PLN02342 88 MAMIFTKPSMRTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQDVLDLAEYSSVPVIN 167 (348)
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeE
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKI 160 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i 160 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+|||+.+++++|+++++++|++|+|++++++++++.|.+++
T Consensus 168 A~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 247 (348)
T PLN02342 168 GLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKI 247 (348)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887764478
Q ss_pred EEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcch
Q 024871 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~ 240 (261)
++++|+++++++|||||+|+|.+|+|+++.+++.+++.+||||+++|+.++++++||||||++||+||+++|+++|+|+|
T Consensus 248 ~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d~p~s~i 327 (348)
T PLN02342 248 EITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVMEAPNSIV 327 (348)
T ss_pred EEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhCCcccHH
Confidence 99999999999999999999999999888777778999999999999999999999999999999999999999999999
Q ss_pred HhHHhccHHHHHHHHHHHhcC
Q 024871 241 FPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 241 ~~Qa~N~l~~r~All~~~l~~ 261 (261)
|+||+||+|+|||||+++||.
T Consensus 328 f~QaeNrl~vrmAlL~~llg~ 348 (348)
T PLN02342 328 FPQAENRMHAQNAIMLHQLGK 348 (348)
T ss_pred HHHHhccHHHHHHHHHHHhcC
Confidence 999999999999999999984
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-90 Score=628.29 Aligned_cols=257 Identities=46% Similarity=0.779 Sum_probs=243.8
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 41 ~~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 120 (302)
T PRK14805 41 VVMLFEKPSLRTRVSFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLAEHGSVPVIN 120 (302)
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+|||+.+++++|+++++++|++|+|++++++.++ +.|
T Consensus 121 a~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g 200 (302)
T PRK14805 121 ALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSG 200 (302)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC
Confidence 9988999999999999999999999999999999999999999999999999999999999999998887654 346
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
.++.+++|. +++++|||||||+|.+|++++..+++++++.+|+||+++|+.++++ +||||||+|||+||+++|+++|
T Consensus 201 -~~~~~~~d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~p 277 (302)
T PRK14805 201 -GKLVLTSDI-EAIEGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDGE 277 (302)
T ss_pred -CEEEEEcCH-HHHCCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCCC
Confidence 678889995 6899999999999999987665566788999999999999999877 9999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 278 ~s~i~~QaeN~l~vr~All~~~l~ 301 (302)
T PRK14805 278 GSLILQQAENRMHAQNAVLVTLLS 301 (302)
T ss_pred cChHHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999999987
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-89 Score=627.94 Aligned_cols=260 Identities=45% Similarity=0.726 Sum_probs=245.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++||++||||++||+++||+|+|+||+||+.++.++++|+++++||||
T Consensus 48 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~~s~vPVIN 127 (332)
T PRK04284 48 IALIFEKDSTRTRCAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWN 127 (332)
T ss_pred EEEEecCCChhHHHHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHH-hCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----H
Q 024871 81 GLTDYNHPCQIMADALTIIEH-VGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----K 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~-~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~ 154 (261)
|+++.+||||+|+|+|||+|+ +|+++|+||+||||+ +||+|||+.+++++|+++++++|++|.|++++++.++ +
T Consensus 128 a~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~ 207 (332)
T PRK04284 128 GLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAE 207 (332)
T ss_pred CCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999 799999999999997 7899999999999999999999999999998887665 3
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhcC-CCcEEeeCCCCC---------
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE--------- 223 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a~-~~~~~mH~lP~~--------- 223 (261)
.| ..+.+++|+++|+++|||||+++|.+|+++++ .+++.+++.+||||+++|+.++ ++++||||||++
T Consensus 208 ~g-~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~~r~~e~~~~~ 286 (332)
T PRK04284 208 TG-GKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPSFHDLDTKVGK 286 (332)
T ss_pred cC-CeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCCCCCcccchhh
Confidence 55 57999999999999999999999999998665 4567788999999999999986 699999999998
Q ss_pred --------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 --------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 --------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|++|+||+||+|+|||||+++||.
T Consensus 287 ~~~~~~~~rg~Ei~~~V~d~~~S~i~~QaeNrl~~~kAvl~~~~~~ 332 (332)
T PRK04284 287 EIFEKYGLKEMEVTDEVFESKASVVFDEAENRMHTIKAVMVATLGE 332 (332)
T ss_pred hhhhhcCCCCcEEcHHHhCCccchHHHHHhhhHHHHHHHHHHHhcC
Confidence 68889999999999999999999999999999999873
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-89 Score=622.24 Aligned_cols=259 Identities=57% Similarity=0.970 Sum_probs=246.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 42 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~~~~vPVIN 121 (304)
T TIGR00658 42 LALIFEKPSTRTRVSFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAKYASVPVIN 121 (304)
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||.+||+||++.++++||+++++++|++|.|+++++++++ +.|
T Consensus 122 a~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g 201 (304)
T TIGR00658 122 GLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENG 201 (304)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887764 355
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+++++++|+++++++|||||+++|.+|++++...+..+++.+|+||+++|+.+++|++||||||++||.||+++|+++|
T Consensus 202 -~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~rg~Ei~~~V~d~p 280 (304)
T TIGR00658 202 -GSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHRGEEVTDEVIEGP 280 (304)
T ss_pred -CeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCC
Confidence 5799999999999999999999999988655445567788999999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||++++|
T Consensus 281 ~s~~~~Qa~n~~~vr~AlL~~~l~ 304 (304)
T TIGR00658 281 HSIVFDQAENRLHAQKAVMVALLG 304 (304)
T ss_pred cchHHHHHhccHHHHHHHHHHHhC
Confidence 999999999999999999999986
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-88 Score=625.91 Aligned_cols=259 Identities=47% Similarity=0.767 Sum_probs=243.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 45 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 124 (338)
T PRK02255 45 LGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQTVVELAKYATVPVIN 124 (338)
T ss_pred EEEEeCCCCcchHHHHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC---CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH---
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG---RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK--- 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g---~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~--- 154 (261)
|+++.+||||+|+|+|||+|++| +++|+||+||||.+||+|||+.+++++|++|++++|++|+|++++++++++
T Consensus 125 a~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~ 204 (338)
T PRK02255 125 GMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCE 204 (338)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHH
Confidence 99989999999999999999996 599999999999999999999999999999999999999999988877664
Q ss_pred -hCCCeEEEEcCHHHHhCCCCEEEEeccc-CcchhHHHHHHHhhhcC-CcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 155 -AGISKIEITNDPKEVVQGADVVYSDVWA-SMGQKEEAAYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 155 -~g~~~i~~~~d~~~a~~~aDviy~~~w~-~~~~~~~~~~~~~~~~~-y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
.| .++++++|+++++++|||||+++|. +|+++...+++.+.+.+ ||||+++|+.++++++||||||++||.||+++
T Consensus 205 ~~g-~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~~ 283 (338)
T PRK02255 205 VSG-GSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTDE 283 (338)
T ss_pred hcC-CeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecHH
Confidence 45 5789999999999999999999999 58875443445555555 99999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||+++||
T Consensus 284 V~d~p~s~if~Qa~Nrl~vrmAlL~~ll~ 312 (338)
T PRK02255 284 VMDSPRSICFDEAENRLTAIRALLVYFMN 312 (338)
T ss_pred HhCCccchHHHHHhccHHHHHHHHHHHhc
Confidence 99999999999999999999999999986
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-88 Score=624.03 Aligned_cols=260 Identities=42% Similarity=0.659 Sum_probs=244.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
|+++|||||||||+|||+|+++|||+++++++++|+++||||++||+|+||+|+|+||+||+.++.++++++++++||||
T Consensus 48 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~~~~vPVIN 127 (336)
T PRK03515 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWN 127 (336)
T ss_pred EEEEecCCChhHHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++.+||||+|+|+|||+|+|| +++|+||+||||+ +||+|||+.+++++|+++++++|++|.|++++++.++
T Consensus 128 a~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~ 207 (336)
T PRK03515 128 GLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQ 207 (336)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHH
Confidence 99999999999999999999996 5999999999997 7899999999999999999999999999998886554
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC--------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE-------- 223 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~-------- 223 (261)
+.| .++++++|+++++++|||||||+|.+|+++++ .+++.+++.+||||+++|+.+ +++++||||||++
T Consensus 208 ~~g-~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~~~~~~~~~~ 286 (336)
T PRK03515 208 KNG-GNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLG 286 (336)
T ss_pred HcC-CeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCCCCCcccccc
Confidence 356 57999999999999999999999999998655 345668899999999999995 8999999999994
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 287 ~~~~~~~~~~rg~EIs~eV~~~p~s~if~QaeNrl~~~kAvl~~~l~~ 334 (336)
T PRK03515 287 KKMAEEYGLHGGMEVTDEVFESAHSIVFDQAENRLHTIKAVMVATLSK 334 (336)
T ss_pred cchhcccccCCCCEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999874
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-88 Score=622.71 Aligned_cols=259 Identities=44% Similarity=0.682 Sum_probs=243.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++|+++||||++||+||||+|+|+||+||+.++.++++|+++++||||
T Consensus 48 l~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 127 (334)
T PRK12562 48 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAEYAGVPVWN 127 (334)
T ss_pred EEEEECCCCchhHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++.+||||+|+|+|||+|++| .++|+||+||||. +||+|||+.+++++|+++++++|++|+|++++++.++
T Consensus 128 a~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~ 207 (334)
T PRK12562 128 GLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQ 207 (334)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999996 4999999999997 7899999999999999999999999999998886654
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hHHHHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCC---------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KEEAAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPA--------- 222 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~~~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~--------- 222 (261)
+.| +.+++++|+++|+++|||||||+|.+|++ +++..++.+++.+||||+++|+.+ ++|++||||||+
T Consensus 208 ~~g-~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~~~~~~~~~~ 286 (334)
T PRK12562 208 KHG-GKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLG 286 (334)
T ss_pred HcC-CeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCCCCcccccch
Confidence 345 57999999999999999999999999985 444456678899999999999996 799999999999
Q ss_pred ---------CCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 223 ---------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 223 ---------~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|||.||+++|+++|+|+||+||+||+|+|||||.++|.
T Consensus 287 ~~~~~~~~~~Rg~Eit~eV~d~p~S~if~QaeNrl~~~kAvl~~~~~ 333 (334)
T PRK12562 287 KKMAKEFGLHGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLA 333 (334)
T ss_pred hhhhhhccCCCCcEeCHHHhCCCcchHHHHHhhhHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999874
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-88 Score=621.13 Aligned_cols=259 Identities=48% Similarity=0.778 Sum_probs=246.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||++|||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~~~~vPVIN 128 (331)
T PRK02102 49 IALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAKYSGVPVWN 128 (331)
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHHhCCCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----h
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----A 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~ 155 (261)
|+++.+||||+|+|+|||+|++|.++|+||+||||+ +||+|||+.+++++|+++++++|++|+|++++++++++ .
T Consensus 129 a~~~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 208 (331)
T PRK02102 129 GLTDEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKET 208 (331)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHc
Confidence 998899999999999999999999999999999998 78999999999999999999999999999988876653 4
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHh-cCCCcEEeeCCCC------------
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL-AGPKAYFMHCLPA------------ 222 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~-a~~~~~~mH~lP~------------ 222 (261)
| .++++++|+++|+++||||||++|.+|+++.+.+++.+++.+|+||+++|+. +++|++||||||+
T Consensus 209 g-~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~~~~~~~~~~~~~ 287 (331)
T PRK02102 209 G-AKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEI 287 (331)
T ss_pred C-CeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCCCcccccchhhhh
Confidence 5 5799999999999999999999999998765555677889999999999994 7999999999999
Q ss_pred -----CCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 223 -----ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 223 -----~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+||.||+++|+++|+|+||+||+||+|+|||||++++|
T Consensus 288 ~~~~~~rg~EI~~ev~d~p~s~if~Qa~Nrl~vr~AvL~~~l~ 330 (331)
T PRK02102 288 AEKYGLKGLEVTDEVFESKYSIVFDEAENRMHTIKAVMVATLG 330 (331)
T ss_pred hhhcCCCceEecHHHhCCCcchhHhHHhccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999997
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-88 Score=615.75 Aligned_cols=258 Identities=59% Similarity=0.974 Sum_probs=245.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+++||+|+|+||+||+.++.++++++++++||||
T Consensus 46 v~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 125 (304)
T PRK00779 46 LAMIFEKPSTRTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELAEYSTVPVIN 125 (304)
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHHHhCCCCEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-HHHhCCCe
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGISK 159 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-~~~~g~~~ 159 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||.+||+||++.+++++|+++++++|++++|+++++++ +++.| ++
T Consensus 126 ag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g-~~ 204 (304)
T PRK00779 126 GLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETG-AS 204 (304)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcC-Ce
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776 56677 58
Q ss_pred EEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcc
Q 024871 160 IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSI 239 (261)
Q Consensus 160 i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~ 239 (261)
+++++|+++++++|||||+++|.++++.....++.+++.+|+||+++|+.++++++||||||++||+||+++|+++|+|+
T Consensus 205 ~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~~p~s~ 284 (304)
T PRK00779 205 IEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSV 284 (304)
T ss_pred EEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhCCCcch
Confidence 99999999999999999999999988644444567888999999999999999999999999999999999999999999
Q ss_pred hHhHHhccHHHHHHHHHHHh
Q 024871 240 VFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 240 ~~~Qa~N~l~~r~All~~~l 259 (261)
||+||+||+|+|||||+++|
T Consensus 285 ~~~Qa~n~~~vrmAlL~~~l 304 (304)
T PRK00779 285 VWDEAENRLHAQKALLAWLL 304 (304)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 99999999999999999875
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-87 Score=620.53 Aligned_cols=258 Identities=43% Similarity=0.678 Sum_probs=243.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++|+++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~~~~vPVIN 128 (334)
T PRK01713 49 IALIFEKTSTRTRCAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAEYAGVPVFN 128 (334)
T ss_pred EEEEeCCCCchHHHHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---- 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~---- 154 (261)
|+++.+||||+|+|+|||+|++| .++|+||+||||. +||+|||+.+++++|+++++++|++|.|++++++++++
T Consensus 129 a~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~ 208 (334)
T PRK01713 129 GLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKE 208 (334)
T ss_pred CCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998 6999999999997 78999999999999999999999999999988765544
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC---------
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE--------- 223 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~--------- 223 (261)
.| .++++++|+++++++|||||||+|.+|+++.+ .+++.+++.+|+||+++|+.+ +++++||||||++
T Consensus 209 ~g-~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~~~~~~~~~~~ 287 (334)
T PRK01713 209 SG-ARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGR 287 (334)
T ss_pred cC-CeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCCCCCccccccc
Confidence 46 57999999999999999999999999987543 455677899999999999997 7999999999995
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
||+||+++|+++|+|++|+||+||+|+|||||++++
T Consensus 288 ~~~~~~~~~~rg~Ei~~~V~d~~~s~i~~QaeNrl~~~kAvl~~~~ 333 (334)
T PRK01713 288 QIAEKYPELANGIEVTEDVFESPMNIAFEQAENRMHTIKAVMVASL 333 (334)
T ss_pred cchhhhcccCCCcEECHHHhCCCcccHHHHHhchHHHHHHHHHHHh
Confidence 889999999999999999999999999999999986
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-87 Score=611.62 Aligned_cols=254 Identities=29% Similarity=0.380 Sum_probs=240.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|+|||||||+|||.|+++|||+++++++ ++|+++||||++||+++||+|+|+||+||+.++.++++++++++|||
T Consensus 42 v~~lF~~pSTRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVI 121 (301)
T TIGR00670 42 LANLFFEPSTRTRLSFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVI 121 (301)
T ss_pred EEEEeccCCchhHhHHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEE
Confidence 58999999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||++ +.+||||+|+|+|||+|+||+++|+||+||||+ +||+|||+.+++++|+++++++|++|++++++++++++.|
T Consensus 122 Na~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G 201 (301)
T TIGR00670 122 NAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKG 201 (301)
T ss_pred eCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcC
Confidence 9975 789999999999999999999999999999998 8999999999999999999999999998888888888887
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
.++++++|+++|+++||||||++|. +|++. +++.+++.+||||+++|+.++++++|||||| ||.||+++|++
T Consensus 202 -~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~---~~~~~~~~~y~v~~ell~~a~~~ai~mHclP--Rg~Ev~~~V~d 275 (301)
T TIGR00670 202 -IKVRETESLEEVIDEADVLYVTRIQKERFPDP---EEYEKYKGSYGITLERLEAAKKGVIIMHPLP--RVDEIDPSVDD 275 (301)
T ss_pred -CEEEEECCHHHHhCCCCEEEECCccccccCCH---HHHHHHhcCCeECHHHHhhcCCCCEEECCCC--CCcccCHHHhC
Confidence 5899999999999999999999994 45542 3467788999999999999999999999999 99999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+|++|+||+||+|+|||||++++|
T Consensus 276 ~p~s~i~~QaeNrl~~~~AvL~~ll~ 301 (301)
T TIGR00670 276 TPHAKYFKQAFNGVPVRMALLSLLLG 301 (301)
T ss_pred CccchHHHHHhccHHHHHHHHHHHhC
Confidence 99999999999999999999999986
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-85 Score=601.27 Aligned_cols=249 Identities=31% Similarity=0.391 Sum_probs=232.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||.+|||+++++++++++++||||++||+++||+| +|+||+||+.++.+++++++++||||
T Consensus 48 ~~~lF~~pSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVI 127 (305)
T PRK00856 48 VANLFFEPSTRTRLSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVI 127 (305)
T ss_pred EEEEeccCCcchHHHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEE
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||++ +.+||||+|+|+|||+|++|+++|+||+||||. +||+|||+.+++++|+++++++|++|.|++ +
T Consensus 128 Na~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~-------- 198 (305)
T PRK00856 128 NAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-M-------- 198 (305)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-c--------
Confidence 9975 799999999999999999999999999999998 799999999999999999999999998764 2
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
..+++++|+++|+++||||||++|. +++++ ..+++.+++.+||||+++|+.++++++||||||++||+||+++|++
T Consensus 199 -~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~-~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d 276 (305)
T PRK00856 199 -PEYGVHTDLDEVIEDADVVMMLRVQKERMDGG-LLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVAD 276 (305)
T ss_pred -cceEEECCHHHHhCCCCEEEECCccccccccc-chHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhC
Confidence 1247899999999999999999985 44442 1244567889999999999999999999999999999999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+|+||+||+||+|+|||||+++||
T Consensus 277 ~p~s~~f~QAeNrl~~~~All~~~l~ 302 (305)
T PRK00856 277 GPQSVIFEQVTNGVAVRMAVLELLLG 302 (305)
T ss_pred CCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 99999999999999999999999987
|
|
| >KOG1504 consensus Ornithine carbamoyltransferase OTC/ARG3 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-86 Score=579.28 Aligned_cols=259 Identities=61% Similarity=0.972 Sum_probs=251.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
|+|+|.++|||||+|||.|+..|||++.+++++++++++.||+.||+||+|+|+|+|++|.+.|+.+..+|++++|||||
T Consensus 83 ~amIF~KrStRTRvStEt~~~~lGg~~mfLg~~DIqlGvnEs~~DtarVlSsm~d~I~ARV~khsDi~tlak~sSvPiIN 162 (346)
T KOG1504|consen 83 MAMIFAKRSTRTRVSTETGFFLLGGHPMFLGKNDIQLGVNESLYDTARVLSSMVDIIMARVNKHSDILTLAKYSSVPIIN 162 (346)
T ss_pred eEEEEeccccceEEeechhhhhhCCcceeecchhhccccchhhHhHHHHHHHHHHHHHHHHhhhhhHHHHhhccCCceec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC---
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG--- 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g--- 156 (261)
|++|++||+|+|+|++||.|+||. ++|+|++||||+|||+|||++++++||+++.+++|+||+|+.+++.++++.+
T Consensus 163 gL~D~~HPlQ~laD~LTi~E~f~ks~~glkvawiGD~NNvlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eN 242 (346)
T KOG1504|consen 163 GLCDHFHPLQILADLLTIIEHFGKSVEGLKVAWIGDGNNVLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEEN 242 (346)
T ss_pred ccccccChHHHHHHHHHHHHHHhccccccEEEEEccccHHHHHHHHHhhhcceEEEecCCCCCCcchHHHHHHHHHHHhc
Confidence 999999999999999999999975 9999999999999999999999999999999999999999999998877542
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+.++++++|+.+|..+|||+|||+|.||||+++++.|++.|.+||||.++|+.|+|++.|||||||++ +||+|+|+++|
T Consensus 243 gsk~eltnDp~eA~~~anvlvtDtwiSMGqe~ekearlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~-eEVsdeVfy~~ 321 (346)
T KOG1504|consen 243 GSKFELTNDPLEAVIGANVLVTDTWISMGQEDEKEARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHP-EEVSDEVFYGP 321 (346)
T ss_pred CCEEEEecChHHhhcCCcEEEEehhhhcchHHHHHHHHHhhcCceehHHHHhhhCCCceEeeccCCCh-hhccCceeecc
Confidence 48999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|++|+|||||+|++||+|..+|+
T Consensus 322 ~SiVF~eAENR~~a~mavm~~ll~ 345 (346)
T KOG1504|consen 322 YSIVFPEAENRKWAQMAVMLHLLG 345 (346)
T ss_pred ceeecchhhhhHHHHHHHHHHHhc
Confidence 999999999999999999999886
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-85 Score=597.34 Aligned_cols=253 Identities=31% Similarity=0.402 Sum_probs=235.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC--CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP--DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~--~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPV 78 (261)
++++|+|||||||+|||.|+++|||+++++++ ++++++||||++||++|||+|+|+||+||+.++.++++++++++||
T Consensus 42 v~llF~epStRTR~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~a~~~~vPV 121 (306)
T PLN02527 42 MATLFYEPSTRTRLSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRAAATAEIPV 121 (306)
T ss_pred EEEEEcCCCchhHHHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHHHHhCCCCE
Confidence 58999999999999999999999999999987 4689999999999999999999999999999999999999999999
Q ss_pred EeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-C-chHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 79 INGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-N-NIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 79 INa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~-~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
|||++ +.+||||+|+|+|||+|++|.++|+||+||||. + ||+|||+.+++++ |+++++++|++|++++++.+.+++
T Consensus 122 INa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~ 201 (306)
T PLN02527 122 INAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTS 201 (306)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHH
Confidence 99964 789999999999999999999999999999997 5 7999999999988 999999999999999999888888
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH----HHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA----YRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~----~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
.| .++++++|+++|+++||||||++| |+++.+ +..+++.+||||+++|+.++++++|||||| ||+||++
T Consensus 202 ~g-~~~~~~~d~~~a~~~aDvvyt~~~----q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP--Rg~Ei~~ 274 (306)
T PLN02527 202 KG-VEWEESSDLMEVASKCDVLYQTRI----QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP--RLDEITT 274 (306)
T ss_pred cC-CEEEEEcCHHHHhCCCCEEEECCc----chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC--CcccccH
Confidence 77 589999999999999999999875 444332 234455789999999999999999999999 8999999
Q ss_pred ccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 231 GVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 231 ~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+++|+|++|+||+||+|+|||||++++|
T Consensus 275 ~V~d~p~s~i~~QaeNrl~~~~All~~ll~ 304 (306)
T PLN02527 275 DVDSDPRAAYFRQAKNGLFIRMALLKLLLG 304 (306)
T ss_pred HHhCCCcchHHHHHhcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999987
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-85 Score=599.18 Aligned_cols=248 Identities=24% Similarity=0.269 Sum_probs=229.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhh-CCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKF-ATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~-~~vPV 78 (261)
++++|||||||||+|||+|+++|||+++++++++|+++||||++||+++||+| +|+||+||+.++.+++++++ +++||
T Consensus 48 v~~lF~epSTRTR~SFe~A~~~LGg~~~~~~~~~s~~~kgEsl~Dtarvls~y~~D~iv~R~~~~~~~~~~a~~~~~vPv 127 (310)
T PRK13814 48 VANLFFEPSTRTRNSFEIAAKRLGAMVLNPNLKISAISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVV 127 (310)
T ss_pred EEEEEecCcchhHHHHHHHHHHhCCeEEECCCccccCCCCCCHHHHHHHHHHhCCCEEEEeCCchhHHHHHHHhCCCCCe
Confidence 58999999999999999999999999999999999999999999999999999 69999999999999999998 68999
Q ss_pred EeC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH
Q 024871 79 ING-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 79 INa-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
||| +|+.+||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|+ ++++++|++|.|.+..
T Consensus 128 INag~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~------ 201 (310)
T PRK13814 128 INAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVG------ 201 (310)
T ss_pred EECCcCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccc------
Confidence 998 79999999999999999999999999999999998 7999999999999999 9999999999876432
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH--HHHHHhhhc-CCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE--AAYRKQAFQ-GFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~--~~~~~~~~~-~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
+ ..+++++|+++|+++|||||+++|.. |+ .+.+.+.+. +|+||+++|+.++++++||||||++||+||+++
T Consensus 202 -~-~~~~~~~d~~ea~~~aDvvy~~~~~~----er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~~ 275 (310)
T PRK13814 202 -N-DSIKKFTELKPSLLNSDVIVTLRLQK----ERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSD 275 (310)
T ss_pred -c-ceEEEEcCHHHHhCCCCEEEECcccc----ccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCCCCCCCCeeCHH
Confidence 1 36889999999999999999999942 22 122344555 499999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||++++|
T Consensus 276 V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 304 (310)
T PRK13814 276 VADNQQSVILQQVRNGVAMRMAVLELFLL 304 (310)
T ss_pred HhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999987
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-84 Score=598.91 Aligned_cols=257 Identities=38% Similarity=0.607 Sum_probs=234.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcC------------CCCCCCHHHHHHHHhhhccEEEEeeCCc----
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ------------MGKREETRDAARVLCRYNDIIMARVFGH---- 64 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~------------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~---- 64 (261)
++++|||||||||+|||+|+++|||++++++++++| ++||||++||++|||+|+|+||+||+.+
T Consensus 41 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~~D~iv~R~~~~g~~~ 120 (335)
T PRK04523 41 IALVFFNPSLRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRYVDLIGVRAFPKFVDW 120 (335)
T ss_pred EEEEEcCCCchhHHHHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHhCcEEEEeCCcccccc
Confidence 589999999999999999999999999999988765 2699999999999999999999999975
Q ss_pred ------chHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCC-CCcEE--EEEcCC----CchHHHHHHHHhcCC
Q 024871 65 ------QDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRL-EGTKV--VYVGDG----NNIVHSWLLMASVIP 131 (261)
Q Consensus 65 ------~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l-~~~~i--~~vGd~----~~v~~S~~~~~~~~g 131 (261)
..++++++++++|||||+++ +||||+|+|+|||+|++|.+ +|+|| +|+||+ +||+|||+.+++++|
T Consensus 121 ~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g 199 (335)
T PRK04523 121 SKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLG 199 (335)
T ss_pred ccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcC
Confidence 56899999999999999888 99999999999999999999 89999 788875 489999999999999
Q ss_pred cEEEEeCC-CCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchh---HHHHHHHhhhcCCccc
Q 024871 132 FHFVCACP-KGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQK---EEAAYRKQAFQGFQVD 203 (261)
Q Consensus 132 ~~~~~~~P-~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~---~~~~~~~~~~~~y~v~ 203 (261)
+++++++| ++|+|++++++.++ +.| +++++++|+++|+++|||||||+|.+|++. +...+.++++.+|+||
T Consensus 200 ~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~ 278 (335)
T PRK04523 200 MDVTLLCPTPDYILDERYMDWAEQNAAESG-GSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVD 278 (335)
T ss_pred CEEEEECCchhhCCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCC
Confidence 99999999 99999999887654 446 579999999999999999999999987532 2222345788999999
Q ss_pred HHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 204 EFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 204 ~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+++|+.++ +++||||||++||+||+++|+++|+|+||+||+||+|+|||||++++.
T Consensus 279 ~~ll~~a~-~~i~mHcLP~~Rg~Ei~~~V~d~p~s~if~QaeNrl~~r~AlL~~~l~ 334 (335)
T PRK04523 279 ERKMALTN-NGVFSHCLPLRRNVKVTDAVMDSPNCIAIDEAENRLHVQKAIMAALAS 334 (335)
T ss_pred HHHHhCCC-CCEEECCCCCCCCCeeCHHHhCCCcchHHHHHhccHHHHHHHHHHHHh
Confidence 99999874 899999999999999999999999999999999999999999999985
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-84 Score=593.26 Aligned_cols=255 Identities=35% Similarity=0.547 Sum_probs=231.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++++++. |+++||+++||+|+|+||+||+.++.+++++++++|||||
T Consensus 46 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~~~~~~-~~~~dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 124 (311)
T PRK14804 46 LAMLFQKTSTRTRVSFEVAMTEMGGHGIYLDWMASNFQL-SDIDLEARYLSRNVSVIMARLKKHEDLLVMKNGSQVPVIN 124 (311)
T ss_pred EEEEEcCCchhHHHHHHHHHHHcCCeEEEeCCCcccccc-ccHHHHHHHHHhcCCEEEEeCCChHHHHHHHHHCCCCEEE
Confidence 589999999999999999999999999999997766665 8999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC--HHHHHHHHHhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD--KETVEKARKAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~--~~~~~~~~~~g 156 (261)
|+++.+||||+|+|+|||+|++| +++|+||+||||.+||+||++.+++++|+++++++|+++.+. +...+.+++.|
T Consensus 125 ag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g 204 (311)
T PRK14804 125 GCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKG 204 (311)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcC
Confidence 98888999999999999999999 799999999999999999999999999999999999996411 12234455554
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchh------HHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQK------EEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~------~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
.+.+++|+++|+++|||||||+|.+|++. +..+++.+++.+||||+++|++ ++++||||||++||+||++
T Consensus 205 --~i~~~~d~~~av~~aDvvy~d~w~~~~~~~~~~~~~~~~~r~~~~~~y~v~~elm~~--~~~~vmH~lP~~Rg~Ei~~ 280 (311)
T PRK14804 205 --TLSWEMNLHKAVSHADYVYTDTWLDMEFFNDPSYADKKKQRMELMMPYQINSSLMEK--TNAKVMHDMPIHAGYEITR 280 (311)
T ss_pred --CeEEEeCHHHHhCCCCEEEeeeeEECcccCccchHHHHHHHHHhccCCeECHHHHhC--CCCeEeCCCCCCCCceeCH
Confidence 58889999999999999999999998752 2234567889999999999985 4799999999999999999
Q ss_pred ccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 231 GVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 231 ~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+++|+|+||+||+||+|+|||||+++|+
T Consensus 281 ~V~d~p~s~if~QaeN~l~~r~AvL~~~l~ 310 (311)
T PRK14804 281 EVVLSDRSIIFQQAENRLDAQKAVILKLLE 310 (311)
T ss_pred HHhCCCcchHHHHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999986
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-84 Score=597.85 Aligned_cols=255 Identities=29% Similarity=0.440 Sum_probs=233.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEE-eCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~-l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||++|||++++ +++++|+++||||++||++|||+|+|+||+||+.++.+++++++++||||
T Consensus 47 v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y~D~IviR~~~~~~~~~~a~~~~vPVI 126 (338)
T PRK08192 47 LGNLFFEPSTRTRVSFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTYSDVIAMRHPDAGSVKEFAEGSRVPVI 126 (338)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHcCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 58999999999999999999999999996 68888999999999999999999999999999999999999999999999
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHh----CCCCCcEEEEEcCC--CchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHH
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHV----GRLEGTKVVYVGDG--NNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~----g~l~~~~i~~vGd~--~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~ 151 (261)
||++ +.+||||+|+|+|||+|++ |+++|+||+||||+ +||+|||+.+++ ++|+++++++|++|++++++++.
T Consensus 127 Na~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~ 206 (338)
T PRK08192 127 NGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD 206 (338)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH
Confidence 9976 7999999999999999987 37999999999998 789999998755 66999999999999999999988
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH--HHHhhh-cCCcccHHHHH-hcCCCcEEeeCCCCCC---
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA--YRKQAF-QGFQVDEFLMK-LAGPKAYFMHCLPAER--- 224 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~--~~~~~~-~~y~v~~~~~~-~a~~~~~~mH~lP~~r--- 224 (261)
+++.| ..+++++|+++|+++||||||++ +|+++.+ ++.+.+ .+||||.++|+ .++++++||||||++|
T Consensus 207 ~~~~g-~~~~~~~d~~ea~~~aDvvyt~~----~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r 281 (338)
T PRK08192 207 IENAG-HKITITDQLEGNLDKADILYLTR----IQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQ 281 (338)
T ss_pred HHHcC-CeEEEEcCHHHHHccCCEEEEcC----cccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCC
Confidence 88887 58999999999999999999996 4766532 233334 56999999995 6899999999999984
Q ss_pred CcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 225 GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 225 g~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 282 ~~Ei~~~V~d~p~s~~f~QAeNrl~~r~AlL~~ll~ 317 (338)
T PRK08192 282 ANELDNDLNSHPNLAIFRQADNGLLIRMALFALTLG 317 (338)
T ss_pred CcEeCHHHhCCccchHHHHHhcCHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999986
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-84 Score=598.75 Aligned_cols=256 Identities=31% Similarity=0.484 Sum_probs=232.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhh--
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKF-- 73 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~-- 73 (261)
++++|||||||||+|||+||++|||+++++++++++++||||++||++|||+|+|+||+||+ .+..+++++++
T Consensus 45 v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~~l~~~a~~~~ 124 (357)
T TIGR03316 45 GISLFRDNSTRTRFSFASAMNLLGLHAQDLDEGKSQIGHGETVRETAEMISFFADGIGIRDDMYIGVGNAYMREVAKYVQ 124 (357)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEeCCCccccccHHHHHHHHhhh
Confidence 57999999999999999999999999999999999999999999999999999999999995 45678899999
Q ss_pred ---------CCCcEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEc--C-----CCchHHHHHHHHhcCCcEE
Q 024871 74 ---------ATVPVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVG--D-----GNNIVHSWLLMASVIPFHF 134 (261)
Q Consensus 74 ---------~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vG--d-----~~~v~~S~~~~~~~~g~~~ 134 (261)
+++|||||+++.+||||+|+|+|||+|+||. ++|+||+++| | .+||+||++.++++||++|
T Consensus 125 ~~~~~~~~~s~vPVINa~~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v 204 (357)
T TIGR03316 125 EGYKDGVLEQRPPLVNLQCDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDV 204 (357)
T ss_pred hccccccccCCCCEEECCCCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999996 7889999775 4 3589999999999999999
Q ss_pred EEeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hH----------HHH--------
Q 024871 135 VCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KE----------EAA-------- 191 (261)
Q Consensus 135 ~~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~----------~~~-------- 191 (261)
++++|++|++++++++.++ +.| .++++++|+++|+++|||||||+|.||+. .+ ...
T Consensus 205 ~~~~P~~~~~~~~~~~~a~~~~~~~g-~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (357)
T TIGR03316 205 TLAHPEGYHLLPEVIEVAKKNAAENG-GKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELL 283 (357)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEECCeeccccccccchhcccchhhhhhhhhccch
Confidence 9999999999999887664 456 57899999999999999999999999871 11 111
Q ss_pred HHHhhhcCCcccHHHHHhcC-CCcEEeeCCCCC-CCc-----ccccccccCCCcchHhHHhccHHHHHHHHHH
Q 024871 192 YRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE-RGV-----EVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257 (261)
Q Consensus 192 ~~~~~~~~y~v~~~~~~~a~-~~~~~mH~lP~~-rg~-----Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~ 257 (261)
+..+++.+|+||.++|+.++ ++++||||||++ ||+ ||+++|+++|+|+||+||+||+|+|||||++
T Consensus 284 ~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP~~~Rg~~~~~~Eit~~V~d~p~s~if~QAeNrl~~r~AlL~~ 356 (357)
T TIGR03316 284 SQNKKHKDWVCTEERMALTHDGEALYMHCLPADIRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIAA 356 (357)
T ss_pred hHHHHhcCCeECHHHHHhcCCCCcEEECCCCCCccCcccccccccHHHhCCCccHHHHHHhhhHHHHHHhhcc
Confidence 12357889999999999998 899999999999 998 9999999999999999999999999999975
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-82 Score=596.10 Aligned_cols=255 Identities=27% Similarity=0.401 Sum_probs=231.0
Q ss_pred EeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhhC--
Q 024871 2 SMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKFA-- 74 (261)
Q Consensus 2 ~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~~-- 74 (261)
+++|||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+ .+..++++++++
T Consensus 63 ~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~~~~g~~~~~~~ela~~~~~ 142 (395)
T PRK07200 63 ISVFRDNSTRTRFSYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGAAVDD 142 (395)
T ss_pred EEEEcCCCchhHHHHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecCcccccccHHHHHHHHHhhh
Confidence 3699999999999999999999999999999999999999999999999999999999995 466788888864
Q ss_pred --------CC-cEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEcC-------CCchHHHHHHHHhcCCcEEE
Q 024871 75 --------TV-PVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVGD-------GNNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 75 --------~v-PVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vGd-------~~~v~~S~~~~~~~~g~~~~ 135 (261)
++ |||||+|+.+||||+|+|+|||+|++|. ++|+||+|+|| .+||+||++.+++++|++++
T Consensus 143 ~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~ 222 (395)
T PRK07200 143 GYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 222 (395)
T ss_pred hcccccccCCCeEEECCCCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEE
Confidence 44 6999999999999999999999999997 88899998865 46899999999999999999
Q ss_pred EeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchh-HH------------------HHH
Q 024871 136 CACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQK-EE------------------AAY 192 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~-~~------------------~~~ 192 (261)
+++|++|++++++++.++ +.| .++++++|+++|+++|||||||+|.||++. |+ ..+
T Consensus 223 ~~~P~~~~~~~~i~~~a~~~~~~~G-~~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~ 301 (395)
T PRK07200 223 LAHPEGYDLMPEVVEVAKKNAKASG-GSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLA 301 (395)
T ss_pred EECCCccCCCHHHHHHHHHHHHHcC-CeEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhH
Confidence 999999999888877654 456 579999999999999999999999998732 21 123
Q ss_pred HHhhhcCCcccHHHHHhcCCC-cEEeeCCCCC------CCcccccccccCCCcchHhHHhccHHHHHHHHHH
Q 024871 193 RKQAFQGFQVDEFLMKLAGPK-AYFMHCLPAE------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLH 257 (261)
Q Consensus 193 ~~~~~~~y~v~~~~~~~a~~~-~~~mH~lP~~------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~ 257 (261)
+.+++.+||||+++|+.++++ ++||||||++ ||+||+++|+|+|+|+||+||+||+|+|||+|+.
T Consensus 302 ~~~~~~~y~v~~elm~~a~~~~ai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~if~QAeNrlh~~~Avl~~ 373 (395)
T PRK07200 302 QNAQHKDWHCTEEMMKLTKDGKALYMHCLPADISGVSCKEGEVTESVFDRYRIALYKEASWKPYIIAAMIFL 373 (395)
T ss_pred HHHHccCCCcCHHHHhccCCCCcEEECCCCCCCcccCCCCCEECHHHhCCCcchHHHHhcchHHHHHHHHHH
Confidence 467899999999999999884 9999999998 5999999999999999999999999999999987
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-82 Score=599.46 Aligned_cols=255 Identities=30% Similarity=0.429 Sum_probs=237.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||+||++|||++++++ +++|+++||||++||++|||+|+|+||+||+.++.++++|++++||||
T Consensus 129 v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVI 208 (429)
T PRK11891 129 LGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVI 208 (429)
T ss_pred EEEEeccCCchhHHHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEE
Confidence 5799999999999999999999999999996 578999999999999999999999999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhC----CCCCcEEEEEcCC--CchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHH
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVG----RLEGTKVVYVGDG--NNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g----~l~~~~i~~vGd~--~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~ 151 (261)
||+ |+.+||||+|+|+|||+|+|| .++|+||+||||+ +||+||++.+++.+ |++|++++|++|+++++++++
T Consensus 209 NAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~ 288 (429)
T PRK11891 209 NGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQ 288 (429)
T ss_pred ECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHH
Confidence 997 699999999999999999996 3999999999998 79999999998776 999999999999999999988
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHH--HHHHhhhcCCcccHHHHHh-cCCCcEEeeCCCCC-C--C
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEA--AYRKQAFQGFQVDEFLMKL-AGPKAYFMHCLPAE-R--G 225 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~--~~~~~~~~~y~v~~~~~~~-a~~~~~~mH~lP~~-r--g 225 (261)
++++| +.+++++|+++|+++||||||++| |+|+. +..++++.+|+||+++|+. ++++++||||||++ | |
T Consensus 289 ~~~~G-~~v~~~~d~~eav~~ADVVYt~~~----q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g 363 (429)
T PRK11891 289 ISRNG-HVIEQTDDLAAGLRGADVVYATRI----QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGA 363 (429)
T ss_pred HHhcC-CeEEEEcCHHHHhCCCCEEEEcCc----hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCC
Confidence 88877 589999999999999999999985 55543 2346677889999999999 89999999999987 4 6
Q ss_pred cccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 226 ~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+||+++|+++|+|+||+||+||+|+|||||++++|
T Consensus 364 ~EIs~eV~d~p~S~if~QAeNrl~vr~AvL~~llg 398 (429)
T PRK11891 364 NDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLLG 398 (429)
T ss_pred cEeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999986
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=549.81 Aligned_cols=253 Identities=31% Similarity=0.413 Sum_probs=233.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCC-cE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATV-PV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~v-PV 78 (261)
++++|||||||||.|||.|+++|||+|+.++.++||..||||+.||+++|++| +|+||+||+..++...+|+++++ ||
T Consensus 49 v~~lFFEpSTRTr~SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pv 128 (316)
T COG0540 49 VANLFFEPSTRTRLSFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPV 128 (316)
T ss_pred EEEEEecCCCchhhhHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHhhCCCEEEEeCccccHHHHHHHhcCCCce
Confidence 57999999999999999999999999999999888889999999999999999 99999999999999999999999 89
Q ss_pred EeC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 79 ING-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 79 INa-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
||| +|.++||||+|+|+|||+|+||.++|+||++|||. +||+||++.++.+||.++++++|+.+.|++++++..++.
T Consensus 129 INaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~ 208 (316)
T COG0540 129 INAGDGSHQHPTQALLDLYTIREEFGRLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEK 208 (316)
T ss_pred EECCCCCCCCccHHHHHHHHHHHHhCCcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhc
Confidence 997 68999999999999999999999999999999997 689999999999999999999999999999999888887
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHH------HHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccc
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAA------YRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVT 229 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~------~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~ 229 (261)
| ..+.+.+..+|+++++||+|++| .|+||+. +.++++.-|+++.+.+ ++++++||||||+||++||+
T Consensus 209 ~-~~~~~~~~~e~~i~~~DVl~~lR----vQ~ER~~~~~~~s~~~~y~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~ 281 (316)
T COG0540 209 G-GVVVEHDSDEEVIEEADVLYMLR----VQKERFNDPEEYSKVKEYYKLYGLTLERL--AKPDAIVMHPLPVNRVVEIA 281 (316)
T ss_pred C-ceEEEecchhhhhccCCEEEeeh----hhHhhcCCccchHHHHHHHHHHHHHHHhh--cCCCcEEECCCCccCCCcCc
Confidence 6 35566666677999999999998 6777752 2456666666666665 89999999999999999999
Q ss_pred cccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 230 EGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 230 ~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++|+++|+|.||+|++||+++|||||+.+|+
T Consensus 282 ~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~ 312 (316)
T COG0540 282 SEVDDTPQSRYFQQVKNGVAVRMALLELLLG 312 (316)
T ss_pred hhhhcchHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999886
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-78 Score=582.09 Aligned_cols=258 Identities=20% Similarity=0.239 Sum_probs=229.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhc-CCeEEEeCCCCcCCCCCCCHHHHHHHHhhhcc--EEEEeeCC-------cchHHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLL-GGHAIYLGPDDIQMGKREETRDAARVLCRYND--IIMARVFG-------HQDILDL 70 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~L-Gg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D--~iv~R~~~-------~~~~~~~ 70 (261)
++++|||||||||+|||+||++| ||+++++++++||++||||++||++|||+|+| +||+||+. +..+.++
T Consensus 53 vallF~epSTRTR~SFE~A~~~LgGg~~i~l~~~~ssl~kGESl~DTarvLs~y~D~d~IviR~~~~g~~~~~~~~l~~~ 132 (525)
T PRK13376 53 IYIVFVEPSTRTKESFINAAKFHKNVKVNIFDSEHSSFNKQESYTDTFNMLTGYSDYSIFIVRTRLEGVCRLLEEKVSEF 132 (525)
T ss_pred EEEEEccCCchHHHHHHHHHHHcCCCcEEEcCCccccCCCCcCHHHHHHHHHHcCCCcEEEEeCCccchhHHHHHHHHHH
Confidence 47999999999999999999999 99999999999999999999999999999999 99999976 4456678
Q ss_pred hhhCCCc---EEeCC-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCC--CchHHHHHHHHhcCC-cEEEEeCCCCC
Q 024871 71 AKFATVP---VINGL-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDG--NNIVHSWLLMASVIP-FHFVCACPKGF 142 (261)
Q Consensus 71 a~~~~vP---VINa~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~--~~v~~S~~~~~~~~g-~~~~~~~P~~~ 142 (261)
++++++| ||||+ |+++||||+|+|+|||+|++| +++|+||+||||. +||+|||+.++++|| ++|++++|++|
T Consensus 133 a~~s~vpVp~VINAgdg~~~HPTQaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~ 212 (525)
T PRK13376 133 ASRNGIEVPAFINAGDGKHEHPTQELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEEL 212 (525)
T ss_pred HHhcCCCcceEEECCCCCCCCchHHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccc
Confidence 8888866 59996 899999999999999999999 7999999999998 799999999999998 99999999999
Q ss_pred CCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCC---EEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 143 EPDKETVEKARKAGISKIEITNDPKEVVQGAD---VVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 143 ~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aD---viy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
+++++++++++++| ..+++++|+++|+++|| ++|++|+. ||+++.. ++..+++.+|+||+++|+.++++++||
T Consensus 213 ~~p~~~~~~a~~~G-~~v~i~~d~~eav~~AD~tdvw~~~RiQ~Ermg~~~~-~~~~~~~~~y~vt~elm~~ak~~ai~M 290 (525)
T PRK13376 213 AMPEHYVEKMKKNG-FEVRIFSSIEEYLSQKDVAKIWYFTRLQLERMGEDIL-EKEHILRKAVTFRKEFLDKLPEGVKFY 290 (525)
T ss_pred cCCHHHHHHHHHcC-CeEEEEcCHHHHhccCCccceEEEeccccccCCCccc-hhHHHHhcCcEECHHHHhccCCCCEEE
Confidence 99999999888887 57999999999999999 23444432 7766421 123445679999999999999999999
Q ss_pred eCCCCCCCcccccccccC-CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 218 HCLPAERGVEVTEGVIEA-PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 218 H~lP~~rg~Ev~~~v~~~-~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
||||++||.|+.++++|+ |++++|+||+||+|+|||||++++|
T Consensus 291 HcLPa~Rg~Ee~~~vvD~~~~s~~f~QAeNgl~vrmAlL~~ll~ 334 (525)
T PRK13376 291 HPLPRHKVYPTIPTFLDTLPLNGWETQAINGYWVRIVLLSMLGG 334 (525)
T ss_pred CCCCCCCCCceeCHhhcCCcceeHHHHHhccHHHHHHHHHHHhC
Confidence 999999998777777777 6899999999999999999999986
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=311.28 Aligned_cols=151 Identities=47% Similarity=0.762 Sum_probs=132.7
Q ss_pred CCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCC--CCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 106 EGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFE--PDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 106 ~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~--~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+|+||+||||. +||+|||+.++++||+++++++|+++. ++++++++++ ++| +++++++|+++++++||||||
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~~~~e~l~~aDvvy~ 79 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-GKITITDDIEEALKGADVVYT 79 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-TEEEEESSHHHHHTT-SEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-CCeEEEeCHHHhcCCCCEEEE
Confidence 68999999996 899999999999999999999999965 4457776554 455 689999999999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHH
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHA 258 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~ 258 (261)
++|.|||++|+. ++.+.+.+||||.++|+.+++|++||||||++||.||+++|+++|+|++|+||+||+|+|||||+++
T Consensus 80 ~~~~s~~~~e~~-~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~~~s~~~~Qa~N~l~vrmAll~~l 158 (158)
T PF00185_consen 80 DRWQSMGDKERF-KRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDSPRSVYFEQAENRLHVRMALLALL 158 (158)
T ss_dssp ESSSCTTSGGHH-HHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchHHH-HHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCCcccHHHHHHHhHHHHHHHHHHhC
Confidence 999999996665 4555666799999999999999999999999999999999999999999999999999999999875
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=284.88 Aligned_cols=101 Identities=48% Similarity=0.741 Sum_probs=97.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+.+|||+++++++++++++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 42 v~~lF~e~StRTR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 121 (142)
T PF02729_consen 42 VALLFFEPSTRTRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHSSVPVIN 121 (142)
T ss_dssp EEEEESS--HHHHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHCSSEEEE
T ss_pred EEEEecCCCchhhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhccCCeEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHH
Q 024871 81 GLTDYNHPCQIMADALTIIEH 101 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~ 101 (261)
|+++.+||||+|+|+|||+|+
T Consensus 122 a~~~~~HPtQaL~Dl~Ti~e~ 142 (142)
T PF02729_consen 122 AGDDHEHPTQALADLFTIREH 142 (142)
T ss_dssp EEESSBSHHHHHHHHHHHHHH
T ss_pred CcCCCCChHHHHHHHHHHhhC
Confidence 988999999999999999986
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0044 Score=57.67 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.6
Q ss_pred HhhhCCCcEEeCCCCCCChhHHHHH--HHHHHH-----------------HhC--CCCCcEEEEEcCCCchHHHHHHHHh
Q 024871 70 LAKFATVPVINGLTDYNHPCQIMAD--ALTIIE-----------------HVG--RLEGTKVVYVGDGNNIVHSWLLMAS 128 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPtQ~L~D--l~Ti~e-----------------~~g--~l~~~~i~~vGd~~~v~~S~~~~~~ 128 (261)
.+...+++|.|+.+.+..+-..++= ++.+.+ .+. .+.|++|+++| .+++..-.+..+.
T Consensus 84 ~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG-~G~IG~~va~~l~ 162 (324)
T COG0111 84 AATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIG-LGRIGRAVAKRLK 162 (324)
T ss_pred HHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEEC-CCHHHHHHHHHHH
Confidence 4445589999997766666554433 333332 122 36699999999 5889999999999
Q ss_pred cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHH
Q 024871 129 VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMK 208 (261)
Q Consensus 129 ~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~ 208 (261)
.|||++....|..-... .... .+...+++++.++.+|||..-. +...+.+ --|+.+.++
T Consensus 163 afgm~v~~~d~~~~~~~------~~~~---~~~~~~~Ld~lL~~sDiv~lh~--PlT~eT~----------g~i~~~~~a 221 (324)
T COG0111 163 AFGMKVIGYDPYSPRER------AGVD---GVVGVDSLDELLAEADILTLHL--PLTPETR----------GLINAEELA 221 (324)
T ss_pred hCCCeEEEECCCCchhh------hccc---cceecccHHHHHhhCCEEEEcC--CCCcchh----------cccCHHHHh
Confidence 99999999888322111 1111 2344678999999999998853 2222221 337888888
Q ss_pred hcCCCcEEeeCC
Q 024871 209 LAGPKAYFMHCL 220 (261)
Q Consensus 209 ~a~~~~~~mH~l 220 (261)
+.|+.++|..|.
T Consensus 222 ~MK~gailIN~a 233 (324)
T COG0111 222 KMKPGAILINAA 233 (324)
T ss_pred hCCCCeEEEECC
Confidence 888888888873
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0037 Score=59.46 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD 145 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~ 145 (261)
+.++..+|+|.|+-|-...+. -+++=++.+.++.| .+.|++|++||= +|+...++..+..||+++..+.|+.-..
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~-G~IG~~va~~l~a~G~~V~~~Dp~~~~~- 152 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGA-GHVGGRLVRVLRGLGWKVLVCDPPRQEA- 152 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCccccc-
Confidence 344567899999754333332 34555666666665 499999999994 8899999999999999999887743110
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+ ... ..++++.+++||+|..-
T Consensus 153 ---------~~--~~~-~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 153 ---------EG--DGD-FVSLERILEECDVISLH 174 (381)
T ss_pred ---------cc--Ccc-ccCHHHHHhhCCEEEEe
Confidence 01 112 35799999999998874
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0062 Score=58.03 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|.-+.+..+. .+++=++.+.+++ + .++|++|++|| .+++.+..+.
T Consensus 138 ~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG-~G~IG~~vA~ 216 (386)
T PLN03139 138 PAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVG-AGRIGRLLLQ 216 (386)
T ss_pred HHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEe-ecHHHHHHHH
Confidence 334557899999755433332 2233333332211 1 38999999999 5889999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++....|... + ++. .++.| +...+++++.++++|||..-.
T Consensus 217 ~L~afG~~V~~~d~~~~-~-~~~---~~~~g---~~~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 217 RLKPFNCNLLYHDRLKM-D-PEL---EKETG---AKFEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred HHHHCCCEEEEECCCCc-c-hhh---HhhcC---ceecCCHHHHHhhCCEEEEeC
Confidence 99999999987765432 2 111 22333 234568999999999999864
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.012 Score=54.23 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=65.4
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh-------------------------CCCCCcEEEEEcCCCchHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV-------------------------GRLEGTKVVYVGDGNNIVH 121 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~-------------------------g~l~~~~i~~vGd~~~v~~ 121 (261)
..++..+|+|.|+-+....|.- +++=++.+.+++ ..+.|++|+++| .+++..
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG-~G~IG~ 158 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIG-LGTIGK 158 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEEC-CCHHHH
Confidence 4455678999997654444432 222233332221 147999999999 488999
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 122 S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..+..+.-||+++....|..-. . ..+ +. ..++++.++.+|+|..-
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~--~-------~~~---~~-~~~l~ell~~sDvv~lh 203 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKN--K-------NEE---YE-RVSLEELLKTSDIISIH 203 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccc--c-------ccC---ce-eecHHHHhhcCCEEEEe
Confidence 9999999999999988874211 0 112 22 34899999999999875
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=56.70 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|.-+-...+. .+++=++.+.+++ | .|.|++|+++| .+++....+..+
T Consensus 92 ~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG-~G~IG~~vA~~~ 170 (409)
T PRK11790 92 DAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG-YGHIGTQLSVLA 170 (409)
T ss_pred HHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC-CCHHHHHHHHHH
Confidence 344556899999754333222 2333334332211 1 38999999999 488999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..||+++....|.... ..+ .+....++++.++++|+|..-
T Consensus 171 ~~fGm~V~~~d~~~~~----------~~~--~~~~~~~l~ell~~sDiVslh 210 (409)
T PRK11790 171 ESLGMRVYFYDIEDKL----------PLG--NARQVGSLEELLAQSDVVSLH 210 (409)
T ss_pred HHCCCEEEEECCCccc----------ccC--CceecCCHHHHHhhCCEEEEc
Confidence 9999999988874211 011 234456899999999999885
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0095 Score=56.60 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=67.3
Q ss_pred HHhhhCCCcEEeCCCCCCCh--hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 024871 69 DLAKFATVPVINGLTDYNHP--CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD 145 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HP--tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~ 145 (261)
+.++..+|+|-|+-|-+..+ --+++=++.+.++.| .+.|++|++||= +|+..-++..+..||+++..+.|..-..
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~-G~IG~~vA~~l~a~G~~V~~~dp~~~~~- 152 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGV-GNVGRRLQARLEALGIKTLLCDPPRADR- 152 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCccccc-
Confidence 34456789999974422221 223444555666555 499999999995 8899999999999999999888742111
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+ ... ...++++.+++||||..-
T Consensus 153 ----------~-~~~-~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 153 ----------G-DEG-DFRSLDELVQEADILTFH 174 (378)
T ss_pred ----------c-ccc-ccCCHHHHHhhCCEEEEe
Confidence 1 011 245899999999999953
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=55.36 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=68.4
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|.-+....|. .+++-++.+.+++ + .+.|++|+++|= +++....+.
T Consensus 131 ~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~-G~IG~~vA~ 209 (385)
T PRK07574 131 QAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGA-GRIGLAVLR 209 (385)
T ss_pred HHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECC-CHHHHHHHH
Confidence 334556899999754333333 2444455543321 1 278899999994 789999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++....|... +.+. .+..| ++...+++++++++|||..-.
T Consensus 210 ~l~~fG~~V~~~dr~~~--~~~~---~~~~g---~~~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 210 RLKPFDVKLHYTDRHRL--PEEV---EQELG---LTYHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred HHHhCCCEEEEECCCCC--chhh---HhhcC---ceecCCHHHHhhcCCEEEEcC
Confidence 99999999998876432 1211 12233 344568999999999998853
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=49.93 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++|= +++....+..+..||++++...|..-.. ....+.+ + ...++++.++.+|+|.... +
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~-----~~~~~~~---~-~~~~l~ell~~aDiv~~~~--p 100 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPE-----EGADEFG---V-EYVSLDELLAQADIVSLHL--P 100 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHH-----HHHHHTT---E-EESSHHHHHHH-SEEEE-S--S
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChh-----hhccccc---c-eeeehhhhcchhhhhhhhh--c
Confidence 489999999994 8899999999999999999998854211 1122333 3 3569999999999999864 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
...+ ...-++++.++..+++++|..+. ||.=|+++
T Consensus 101 lt~~----------T~~li~~~~l~~mk~ga~lvN~a---RG~~vde~ 135 (178)
T PF02826_consen 101 LTPE----------TRGLINAEFLAKMKPGAVLVNVA---RGELVDED 135 (178)
T ss_dssp SSTT----------TTTSBSHHHHHTSTTTEEEEESS---SGGGB-HH
T ss_pred cccc----------cceeeeeeeeeccccceEEEecc---chhhhhhh
Confidence 1221 12558999999999999999854 56544443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.036 Score=51.56 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=76.9
Q ss_pred HHhhhCCCcEEeCCCCCCChhHH--HHHHHHHHHH---------------------hC-CCCCcEEEEEcCCCchHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQI--MADALTIIEH---------------------VG-RLEGTKVVYVGDGNNIVHSWL 124 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ~--L~Dl~Ti~e~---------------------~g-~l~~~~i~~vGd~~~v~~S~~ 124 (261)
+.++..+|+|.|+-+-...+.-- ++=++.+.++ .| .|.|++++++| .+++....+
T Consensus 83 ~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG-~G~IG~~va 161 (323)
T PRK15409 83 DALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVG-MGRIGMALA 161 (323)
T ss_pred HHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEc-ccHHHHHHH
Confidence 44456789999976544444322 2222333221 12 37899999999 488999998
Q ss_pred HHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCccc
Q 024871 125 LMAS-VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVD 203 (261)
Q Consensus 125 ~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~ 203 (261)
..+. -||+++....|.. +++. ..+.| ++ ..++++.++++|+|..-. +...+.+ .-++
T Consensus 162 ~~l~~~fgm~V~~~~~~~---~~~~---~~~~~---~~-~~~l~ell~~sDvv~lh~--plt~~T~----------~li~ 219 (323)
T PRK15409 162 QRAHFGFNMPILYNARRH---HKEA---EERFN---AR-YCDLDTLLQESDFVCIIL--PLTDETH----------HLFG 219 (323)
T ss_pred HHHHhcCCCEEEEECCCC---chhh---HHhcC---cE-ecCHHHHHHhCCEEEEeC--CCChHHh----------hccC
Confidence 8887 8999998776642 1111 12233 23 348999999999998853 2222211 2345
Q ss_pred HHHHHhcCCCcEEeeC
Q 024871 204 EFLMKLAGPKAYFMHC 219 (261)
Q Consensus 204 ~~~~~~a~~~~~~mH~ 219 (261)
.+.++..|++++|.-+
T Consensus 220 ~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 220 AEQFAKMKSSAIFINA 235 (323)
T ss_pred HHHHhcCCCCeEEEEC
Confidence 5555555555555543
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.23 Score=48.04 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCCcEEeC-CCCCC------C-hhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYN------H-PCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~------H-PtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..- + --|...| .|.+..+ .+.|++++++|- +++.+..+..+..+|++++++......
T Consensus 172 l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~--ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~r- 247 (425)
T PRK05476 172 LKFPAINVNDSVTKSKFDNRYGTGESLLD--GIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPIC- 247 (425)
T ss_pred CCCCEEecCCcccCccccccHHHHhhhHH--HHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchh-
Confidence 68999996 44221 2 2344333 3333323 378999999996 689999999999999998877543221
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+...|. + ..+++++++++|+|++.+
T Consensus 248 ----a~~A~~~G~---~-v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 248 ----ALQAAMDGF---R-VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred ----hHHHHhcCC---E-ecCHHHHHhCCCEEEECC
Confidence 122333342 2 236889999999999864
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.025 Score=53.13 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=61.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH-H----HHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET-V----EKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~-~----~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+.|++++++| .+++....+..+..||++++...|.. ...+.. . ........... ...+++++++++|+|..
T Consensus 156 ~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 156 TLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSW-TSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVL 232 (347)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCC-ChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEE
Confidence 48999999999 48899999999999999999887742 111100 0 00000000001 24589999999999998
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
-. +...+. ..-++++.++..+++++|.-+
T Consensus 233 ~l--Plt~~T----------~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 233 CC--TLTKET----------AGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred CC--CCChHh----------hcccCHHHHhcCCCCeEEEEC
Confidence 63 111111 123555566655555555554
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.041 Score=50.93 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|+++|= +++....+..+.-||+++....|..- +. + .. ..++++.++.+|+|..-
T Consensus 145 ~l~gktvgIiG~-G~IG~~vA~~l~~fgm~V~~~~~~~~---~~--------~---~~-~~~l~ell~~sDiv~l~ 204 (317)
T PRK06487 145 ELEGKTLGLLGH-GELGGAVARLAEAFGMRVLIGQLPGR---PA--------R---PD-RLPLDELLPQVDALTLH 204 (317)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCC---cc--------c---cc-ccCHHHHHHhCCEEEEC
Confidence 378899999994 88999999999999999988776421 10 1 11 23799999999999875
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.071 Score=48.90 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=79.8
Q ss_pred HHHhhhc-cEEEEeeCCcchHHHHhhhCCCcEEeCCCC---CCChhHHHHHH---HHHHHHhCCCCCcEEEEEcCCCchH
Q 024871 48 RVLCRYN-DIIMARVFGHQDILDLAKFATVPVINGLTD---YNHPCQIMADA---LTIIEHVGRLEGTKVVYVGDGNNIV 120 (261)
Q Consensus 48 ~~ls~~~-D~iv~R~~~~~~~~~~a~~~~vPVINa~~~---~~HPtQ~L~Dl---~Ti~e~~g~l~~~~i~~vGd~~~v~ 120 (261)
..++.+- ..+++=......+.+.++..++.|+|.... ...-.|.-++. ..+.+....+.|+|++++|- +++.
T Consensus 86 ~~l~~l~~~~~v~~G~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~~~l~g~kvlViG~-G~iG 164 (296)
T PRK08306 86 ELLELTPEHCTIFSGIANPYLKELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHTPITIHGSNVLVLGF-GRTG 164 (296)
T ss_pred HHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhCCCCCCCCEEEEECC-cHHH
Confidence 3455553 232332334445677788889999985432 11233333332 22222234689999999996 6799
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 121 ~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+..+..+|.+++++... ++..+.+++.|. .....+++.+.++++|+|+...
T Consensus 165 ~~~a~~L~~~Ga~V~v~~r~-----~~~~~~~~~~G~-~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 165 MTLARTLKALGANVTVGARK-----SAHLARITEMGL-SPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred HHHHHHHHHCCCEEEEEECC-----HHHHHHHHHcCC-eeecHHHHHHHhCCCCEEEECC
Confidence 99999999999998888654 222344556663 3333457788999999999864
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.064 Score=49.04 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=80.0
Q ss_pred HHHhhhc-cEEEEeeCCcchHHHHhhhCCCcEEeCCC------CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCch
Q 024871 48 RVLCRYN-DIIMARVFGHQDILDLAKFATVPVINGLT------DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNI 119 (261)
Q Consensus 48 ~~ls~~~-D~iv~R~~~~~~~~~~a~~~~vPVINa~~------~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v 119 (261)
..|.++- ..++.=...+..+...++..+++|++... -+.-|+-..+ +..+.+..+ ++.|++++++|- +++
T Consensus 85 ~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~a-i~~al~~~~~~l~gk~v~IiG~-G~i 162 (287)
T TIGR02853 85 ELLESTKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGA-IMMAIEHTDFTIHGSNVMVLGF-GRT 162 (287)
T ss_pred HHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHH-HHHHHHhcCCCCCCCEEEEEcC-hHH
Confidence 3455553 33444445566777788999999995321 1223443222 223334444 699999999996 779
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 120 ~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+.+..+..+|++++++.... +-.+.+.+.|...+ ..+++++.++++|+|+...
T Consensus 163 G~avA~~L~~~G~~V~v~~R~~-----~~~~~~~~~g~~~~-~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 163 GMTIARTFSALGARVFVGARSS-----ADLARITEMGLIPF-PLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHCCCeee-cHHHHHHHhccCCEEEECC
Confidence 9999999999999988776532 22233444453222 2346788999999999864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.047 Score=49.99 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=102.7
Q ss_pred HHHHHHhcCCeEEEeC--CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYLG--PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~--~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa- 81 (261)
=..++.++|..+.... ... ..|.+.++++-|+.= .|.|++-.+-...+ ..+-+.- ++-=+|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~----~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g 128 (284)
T PRK14179 53 KERSALAAGFKSEVVRLPETI----SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTG 128 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHH
Confidence 3578999999876543 322 235566666666553 57888876633222 1111110 1112331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|++|++||-.+.|..=++..+..-|.+++++..+
T Consensus 129 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------- 191 (284)
T PRK14179 129 HLWSGRPVMIPCTPAG-IMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------- 191 (284)
T ss_pred HHhCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC----------------
Confidence 124478999998 778888887 6999999999986667666666666779999877211
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|++-. |..+ + ++.++ .++++++.-+.-
T Consensus 192 ------t~~l~~~~~~ADIVI~av----g~~~-----------~-v~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 192 ------TRNLAEVARKADILVVAI----GRGH-----------F-VTKEF---VKEGAVVIDVGM 231 (284)
T ss_pred ------CCCHHHHHhhCCEEEEec----Cccc-----------c-CCHHH---ccCCcEEEEecc
Confidence 247899999999999974 4321 1 44444 456777776654
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.036 Score=54.08 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=78.2
Q ss_pred HHHHhhh--CCCcEEeCCCCCCChhHHHHHH-----HH----HHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEE
Q 024871 67 ILDLAKF--ATVPVINGLTDYNHPCQIMADA-----LT----IIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHF 134 (261)
Q Consensus 67 ~~~~a~~--~~vPVINa~~~~~HPtQ~L~Dl-----~T----i~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~ 134 (261)
+..+++. ..+||+|..+. +|..++|. .+ +.+..+ .+.|++++++|- +++.+..+..+..+|+++
T Consensus 205 l~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~V 280 (476)
T PTZ00075 205 LYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGY-GDVGKGCAQALRGFGARV 280 (476)
T ss_pred HHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECC-CHHHHHHHHHHHHCCCEE
Confidence 3444443 68999996432 23333332 11 122223 489999999996 579999999999999998
Q ss_pred EEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCc
Q 024871 135 VCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKA 214 (261)
Q Consensus 135 ~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~ 214 (261)
+++.+..... ..+...|. + ..+++++++.+|+|++-. +. .--|+.+.++..++++
T Consensus 281 iV~e~dp~~a-----~~A~~~G~---~-~~~leell~~ADIVI~at----Gt------------~~iI~~e~~~~MKpGA 335 (476)
T PTZ00075 281 VVTEIDPICA-----LQAAMEGY---Q-VVTLEDVVETADIFVTAT----GN------------KDIITLEHMRRMKNNA 335 (476)
T ss_pred EEEeCCchhH-----HHHHhcCc---e-eccHHHHHhcCCEEEECC----Cc------------ccccCHHHHhccCCCc
Confidence 8774432111 11223342 2 247899999999999864 21 1235666777777777
Q ss_pred EEeeCC
Q 024871 215 YFMHCL 220 (261)
Q Consensus 215 ~~mH~l 220 (261)
++.-..
T Consensus 336 iLINvG 341 (476)
T PTZ00075 336 IVGNIG 341 (476)
T ss_pred EEEEcC
Confidence 766653
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.029 Score=51.68 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|.....+. +.++ ..|.+.+.+.-|+.- .|.|++-.+-.. .-.++-+.- ++-=.|.
T Consensus 60 k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~ 136 (299)
T PLN02516 60 KRKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGK 136 (299)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhh
Confidence 3568899999875443 2222 245577777777664 578888776332 222222110 1112231
Q ss_pred ----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 ----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 ----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+ .....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++..-|.++++|.-+
T Consensus 137 l~~~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------- 200 (299)
T PLN02516 137 LAMKGREPLFLPCTPKG-CLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------- 200 (299)
T ss_pred HhcCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------
Confidence 1 24468999999 888888887 6999999999987778888887777779999988431
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~ 222 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++.-
T Consensus 201 -------T~nl~~~~~~ADIvv~Av----Gk------------~~~i~~~~v---k~gavVIDvGin 241 (299)
T PLN02516 201 -------TPDPESIVREADIVIAAA----GQ------------AMMIKGDWI---KPGAAVIDVGTN 241 (299)
T ss_pred -------CCCHHHHHhhCCEEEEcC----CC------------cCccCHHHc---CCCCEEEEeecc
Confidence 457899999999999975 43 244777775 478888888763
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.036 Score=54.11 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCCcEEeC-CCCCCCh-------hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYNHP-------CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~HP-------tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..=|. -|.+.|-+ .+..+ .+.|++++++|- +.+.+..+..+..+|++++++......
T Consensus 214 L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i--~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r- 289 (477)
T PLN02494 214 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGL--MRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPIC- 289 (477)
T ss_pred CCCCEEEEcChhhhhhhhccccccccHHHHH--HHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchh-
Confidence 58999995 4433232 37776654 33334 389999999996 689999999999999998877543221
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r 224 (261)
...+...|. .. .+++++++++|++++.. +.. --++.+.++..++++++.-..= -
T Consensus 290 ----~~eA~~~G~---~v-v~leEal~~ADVVI~tT----Gt~------------~vI~~e~L~~MK~GAiLiNvGr--~ 343 (477)
T PLN02494 290 ----ALQALMEGY---QV-LTLEDVVSEADIFVTTT----GNK------------DIIMVDHMRKMKNNAIVCNIGH--F 343 (477)
T ss_pred ----hHHHHhcCC---ee-ccHHHHHhhCCEEEECC----CCc------------cchHHHHHhcCCCCCEEEEcCC--C
Confidence 112344453 22 26889999999999864 321 2256777888888888877642 2
Q ss_pred Cccccccccc
Q 024871 225 GVEVTEGVIE 234 (261)
Q Consensus 225 g~Ev~~~v~~ 234 (261)
+.||+.+-+.
T Consensus 344 ~~eID~~aL~ 353 (477)
T PLN02494 344 DNEIDMLGLE 353 (477)
T ss_pred CCccCHHHHh
Confidence 4566665443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.11 Score=49.54 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh---------------------C-CCCCcEEEEEcCCCchHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV---------------------G-RLEGTKVVYVGDGNNIVHSWL 124 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~---------------------g-~l~~~~i~~vGd~~~v~~S~~ 124 (261)
+.++..+|+|.|+-+-...+.- +++=++.+.+++ | .+.|++|+++| .+++...++
T Consensus 103 ~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG-~G~IG~~vA 181 (386)
T PLN02306 103 EAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG-AGRIGSAYA 181 (386)
T ss_pred HHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC-CCHHHHHHH
Confidence 4455678999997554444432 233233332111 2 37889999999 488999888
Q ss_pred HHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhC-------C--CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHH
Q 024871 125 LMAS-VIPFHFVCACPKGFEPDKETVEKARKAG-------I--SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRK 194 (261)
Q Consensus 125 ~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g-------~--~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~ 194 (261)
..+. .||+++....|..- ++........| . ..++...++++.++++|+|..-. +...+.+
T Consensus 182 ~~l~~~fGm~V~~~d~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~--Plt~~T~----- 251 (386)
T PLN02306 182 RMMVEGFKMNLIYYDLYQS---TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP--VLDKTTY----- 251 (386)
T ss_pred HHHHhcCCCEEEEECCCCc---hhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC--CCChhhh-----
Confidence 8874 89999988877421 11100011111 0 01223468999999999998843 1222221
Q ss_pred hhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 195 QAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 195 ~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
.-|+.+.++..|++++|.-..
T Consensus 252 -----~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 252 -----HLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred -----hhcCHHHHHhCCCCeEEEECC
Confidence 335666666666666666543
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.041 Score=50.45 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=111.1
Q ss_pred CChhhHHH-HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------C
Q 024871 8 PSMRTRVS-FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------A 74 (261)
Q Consensus 8 ~StRTR~S-Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~ 74 (261)
|+.++-.. =..++..+|..+....- .+. ..|.+.+.++-|+.= .|.|++-.+-...+ .++.+. -
T Consensus 44 ~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVD 120 (288)
T PRK14171 44 PASIIYVKNKIKNAHKIGIDTLLVNLSTTI---HTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDID 120 (288)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccc
Confidence 34444433 36789999998755432 211 234566666666553 57888887633221 112111 1
Q ss_pred CCcEEeC------CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 75 TVPVING------LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 75 ~vPVINa------~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
++--.|. ......||-+.+ ++.|.++++ +++|+++++||-.+-|..=+..++..-++++++|.-+
T Consensus 121 Gl~~~N~g~l~~g~~~~~~PcTp~a-v~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------- 192 (288)
T PRK14171 121 GFHPLNVGYLHSGISQGFIPCTALG-CLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------- 192 (288)
T ss_pred cCCccchhhhhcCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------
Confidence 1223352 124578998888 888888887 6999999999987778777777776678999887521
Q ss_pred HHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 148 TVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 148 ~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+.+++||+|++-. |. +.-|+.+++ ++++++.-++-
T Consensus 193 ---------------T~~L~~~~~~ADIvV~Av----Gk------------p~~i~~~~v---k~GavVIDvGi 232 (288)
T PRK14171 193 ---------------THNLSSITSKADIVVAAI----GS------------PLKLTAEYF---NPESIVIDVGI 232 (288)
T ss_pred ---------------CCCHHHHHhhCCEEEEcc----CC------------CCccCHHHc---CCCCEEEEeec
Confidence 457888999999999975 53 234677665 47788887774
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.1 Score=48.72 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|= +++..+++..+..||+++....|.. .+. ...+.|. . ..++++.++++|+|..-.
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~~~~~~~---~-~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTR---KPE---AEKELGA---E-YRPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCC---Chh---hHHHcCC---E-ecCHHHHHhhCCEEEEeC
Confidence 378999999994 8999999999999999998887742 111 1223342 2 358999999999998853
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.085 Score=48.80 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|+++|= +++....+..+.-||+++....+.. ..+ ...+ ..++++.++++|+|..-
T Consensus 144 ~l~gktvgIiG~-G~IG~~va~~l~~fg~~V~~~~~~~---~~~-------~~~~----~~~l~ell~~sDiv~l~ 204 (314)
T PRK06932 144 DVRGSTLGVFGK-GCLGTEVGRLAQALGMKVLYAEHKG---ASV-------CREG----YTPFEEVLKQADIVTLH 204 (314)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCc---ccc-------cccc----cCCHHHHHHhCCEEEEc
Confidence 378999999994 8889999999999999998766532 000 0101 34799999999999975
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.092 Score=51.96 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+.|++|+++|= +++..+.+..+..||++++...|.. .++ .+.+.| +...+++++.++++|+|..-
T Consensus 136 l~gktvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~--~~~----~~~~~g---~~~~~~l~ell~~aDvV~l~ 200 (525)
T TIGR01327 136 LYGKTLGVIGL-GRIGSIVAKRAKAFGMKVLAYDPYI--SPE----RAEQLG---VELVDDLDELLARADFITVH 200 (525)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC--Chh----HHHhcC---CEEcCCHHHHHhhCCEEEEc
Confidence 78899999994 8899999999999999999887742 111 123344 24456899999999999875
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.084 Score=49.20 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=60.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+.|++|+++|- +++..+++..+..+|++++...|..- .. .+ .++...+++++++++|+|..-. +.
T Consensus 144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~-----~~-----~~--~~~~~~~l~ell~~aDiVil~l--P~ 208 (330)
T PRK12480 144 VKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPN-----KD-----LD--FLTYKDSVKEAIKDADIISLHV--PA 208 (330)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChh-----Hh-----hh--hhhccCCHHHHHhcCCEEEEeC--CC
Confidence 78899999994 88999999999899999988876421 00 01 1233568999999999988863 11
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..+.+ .-++.+.++..+++++|.-+
T Consensus 209 t~~t~----------~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 209 NKESY----------HLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred cHHHH----------HHHhHHHHhcCCCCcEEEEc
Confidence 11111 11345666666666666654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.032 Score=52.01 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
+++|+|++++|- +++....+..+.-|||++....|..- +. ..+.+ .....+ +++.++++|+|..-. +
T Consensus 143 ~l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~y~~~~~~-~~------~~~~~--~~~y~~-l~ell~~sDii~l~~--P 209 (324)
T COG1052 143 DLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPN-PE------AEKEL--GARYVD-LDELLAESDIISLHC--P 209 (324)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhcCCCEEEEECCCCC-hH------HHhhc--Cceecc-HHHHHHhCCEEEEeC--C
Confidence 478999999994 88999999999999999998887653 21 11222 134444 999999999998864 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+. ..-|+.+.++..|+++++.-+
T Consensus 210 lt~~T----------~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 210 LTPET----------RHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred CChHH----------hhhcCHHHHHhCCCCeEEEEC
Confidence 22222 245888888888888888775
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.16 Score=47.24 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHH-------------------hC-CCCCcEEEEEcCCCchHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEH-------------------VG-RLEGTKVVYVGDGNNIVHSWLLM 126 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~-------------------~g-~l~~~~i~~vGd~~~v~~S~~~~ 126 (261)
+.++..+++|.|.-+-...+. .+++=++.+.++ .| .+.|++|++|| .+++..+++..
T Consensus 86 ~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG-~G~IG~~vA~~ 164 (332)
T PRK08605 86 ELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIG-TGRIGLAVAKI 164 (332)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEEC-CCHHHHHHHHH
Confidence 445567899999755433332 222223332111 11 37899999999 47888888887
Q ss_pred H-hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHH
Q 024871 127 A-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEF 205 (261)
Q Consensus 127 ~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~ 205 (261)
+ ..+|+++....|.. .+. . .. .+....+++++++++|+|..-. +..... ..-++.+
T Consensus 165 L~~~~g~~V~~~d~~~---~~~----~-~~---~~~~~~~l~ell~~aDvIvl~l--P~t~~t----------~~li~~~ 221 (332)
T PRK08605 165 FAKGYGSDVVAYDPFP---NAK----A-AT---YVDYKDTIEEAVEGADIVTLHM--PATKYN----------HYLFNAD 221 (332)
T ss_pred HHhcCCCEEEEECCCc---cHh----H-Hh---hccccCCHHHHHHhCCEEEEeC--CCCcch----------hhhcCHH
Confidence 7 56899988776642 111 1 11 1334568999999999999863 111111 1345777
Q ss_pred HHHhcCCCcEEeeCC
Q 024871 206 LMKLAGPKAYFMHCL 220 (261)
Q Consensus 206 ~~~~a~~~~~~mH~l 220 (261)
.++..+++++|..+-
T Consensus 222 ~l~~mk~gailIN~s 236 (332)
T PRK08605 222 LFKHFKKGAVFVNCA 236 (332)
T ss_pred HHhcCCCCcEEEECC
Confidence 778788888888764
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.044 Score=50.73 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++....+..+..||+++....|..-..+ +...+.-..+++++++++|+|....
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~----------~~~~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP----------GVQSFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC----------CceeecccccHHHHHhcCCEEEECC
Confidence 37899999999 478888888888899999988776321111 1111111357899999999999863
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.16 E-value=1 Score=43.34 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCCcEEeC-CCC------CCC-hhHHHHHHHHHHHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTD------YNH-PCQIMADALTIIEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~------~~H-PtQ~L~Dl~Ti~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
...||||. ++. +-| --|...| .|.+..+. +.|++|+++|. +.+....+..+..+|++++++-+.
T Consensus 162 l~~Pv~~vnds~~K~~~dn~~g~g~s~~~--~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d---- 234 (413)
T cd00401 162 LKFPAINVNDSVTKSKFDNLYGCRESLID--GIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVD---- 234 (413)
T ss_pred CCCCEEEecchhhcccccccchhchhhHH--HHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC----
Confidence 68999994 432 223 3455544 34444453 79999999996 678999999999999998776432
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.-.+.+++.|. ... +++++++++|+|+...
T Consensus 235 -~~R~~~A~~~G~---~~~-~~~e~v~~aDVVI~at 265 (413)
T cd00401 235 -PICALQAAMEGY---EVM-TMEEAVKEGDIFVTTT 265 (413)
T ss_pred -hhhHHHHHhcCC---EEc-cHHHHHcCCCEEEECC
Confidence 333456677773 222 4678999999999864
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=50.69 Aligned_cols=100 Identities=20% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHhhhCCCcEEeCCCCCCChhH--HHHHHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQ--IMADALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|+-+....+.- +++=++.+.+++ | .+.|++|+++|= +++..+.+..+
T Consensus 81 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~-G~IG~~vA~~l 159 (526)
T PRK13581 81 PAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGL-GRIGSEVAKRA 159 (526)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECC-CHHHHHHHHHH
Confidence 3345578999997544443332 233333332221 1 278999999995 78999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..||++++...|.. +++ .+...|. +.. ++++.++++|+|..-
T Consensus 160 ~~fG~~V~~~d~~~---~~~---~~~~~g~---~~~-~l~ell~~aDiV~l~ 201 (526)
T PRK13581 160 KAFGMKVIAYDPYI---SPE---RAAQLGV---ELV-SLDELLARADFITLH 201 (526)
T ss_pred HhCCCEEEEECCCC---Chh---HHHhcCC---EEE-cHHHHHhhCCEEEEc
Confidence 99999999887742 111 2233442 333 799999999999875
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.18 Score=42.45 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 90 QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 90 Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.+.|-+- +..+ .+.|++++.+|- +.+..+.+..+..+|.+++++- .++.-.-+|...| ++. .++++
T Consensus 7 ~S~~d~i~--r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e-----~DPi~alqA~~dG---f~v-~~~~~ 74 (162)
T PF00670_consen 7 QSLVDGIM--RATNLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTE-----IDPIRALQAAMDG---FEV-MTLEE 74 (162)
T ss_dssp HHHHHHHH--HHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE------SSHHHHHHHHHTT----EE-E-HHH
T ss_pred hhHHHHHH--hcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEE-----CChHHHHHhhhcC---cEe-cCHHH
Confidence 67777543 3333 489999999995 7899999999999999988773 2332221233345 343 37899
Q ss_pred HhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 169 VVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 169 a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++++|+++|.+ |.+ =.|+.+.++..|+++++.--.= -..||+-+-+..
T Consensus 75 a~~~adi~vtaT----G~~------------~vi~~e~~~~mkdgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 75 ALRDADIFVTAT----GNK------------DVITGEHFRQMKDGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HTTT-SEEEE-S----SSS------------SSB-HHHHHHS-TTEEEEESSS--STTSBTHHHHHT
T ss_pred HHhhCCEEEECC----CCc------------cccCHHHHHHhcCCeEEeccCc--CceeEeeccccc
Confidence 999999999975 431 2368888888888988876654 345666544443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.12 Score=47.46 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC----
Q 024871 17 ETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING---- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa---- 81 (261)
..++..+|.++..+.-... ...+.+.+.++-|+.- .|.|++-.+-...+ .++.+.- ++--+|.
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~--~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~ 131 (294)
T PRK14187 54 QRKAEMLGLRSETILLPST--ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLF 131 (294)
T ss_pred HHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHh
Confidence 5688999998765432111 1234566677777665 47788877643222 2221110 1112332
Q ss_pred CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
.+ ....||-+.+ ++.|.++++ +++|+++++||-.+-|..=+..++..-++++++|.-.
T Consensus 132 ~g~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~----------------- 193 (294)
T PRK14187 132 TGQKKNCLIPCTPKG-CLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA----------------- 193 (294)
T ss_pred CCCCCCCccCcCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-----------------
Confidence 12 2468998777 567777777 6999999999987778888887777778999887531
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |... | ++.+++ ++++++.-++-
T Consensus 194 -----T~~l~~~~~~ADIvVsAv----Gkp~-----------~-i~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 194 -----TRDLADYCSKADILVAAV----GIPN-----------F-VKYSWI---KKGAIVIDVGI 233 (294)
T ss_pred -----CCCHHHHHhhCCEEEEcc----CCcC-----------c-cCHHHc---CCCCEEEEecc
Confidence 457888999999999975 5321 2 677665 36778777764
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.099 Score=50.19 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCCcEEeC-CCCCC------Ch-hHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTDYN------HP-CQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~~~------HP-tQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++..= |- .|...|- +.+..+ .+.|++|+++|- +++.+..+..+..+|++++++......
T Consensus 155 L~~Pvi~vnds~~K~~fDn~yg~g~s~~~~--i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r- 230 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDNRYGTGQSTIDG--ILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIR- 230 (406)
T ss_pred CCCcEEEecchhhchhhhcccccchhHHHH--HHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhh-
Confidence 68999995 43222 32 3445543 333334 489999999996 779999999999999998776432111
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+...|. . ..+++++++++|++++.. +.. .-++.+.++..++.+++..-
T Consensus 231 ----~~~A~~~G~---~-v~~leeal~~aDVVItaT----G~~------------~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 231 ----ALEAAMDGF---R-VMTMEEAAKIGDIFITAT----GNK------------DVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred ----HHHHHhcCC---E-eCCHHHHHhcCCEEEECC----CCH------------HHHHHHHHhcCCCCcEEEEE
Confidence 123344452 2 236788999999998864 321 12445555556666666543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.11 Score=49.05 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|.....+. +.++ ..|.+.+.+.-|+.- .|.|++-.+-...+ .++-+.- ++--.|.
T Consensus 124 k~K~~e~~GI~~~~~~lpe~~---te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~ 200 (364)
T PLN02616 124 KKKACDSVGINSFEVRLPEDS---TEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGR 200 (364)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 3568899999875543 2211 123344455555443 47888877633222 2221110 1112331
Q ss_pred ----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 ----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 ----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+ .....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-+.++++|.-+
T Consensus 201 L~~g~~~~~f~PCTp~a-vielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------- 264 (364)
T PLN02616 201 LAMRGREPLFVPCTPKG-CIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------- 264 (364)
T ss_pred HhcCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------
Confidence 1 34578999988 778888887 6999999999987778888888877789999988532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --|+.+++ ++++++.-++-
T Consensus 265 -------T~nl~~~~r~ADIVIsAv----Gkp------------~~i~~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 265 -------TKNPEEITREADIIISAV----GQP------------NMVRGSWI---KPGAVVIDVGI 304 (364)
T ss_pred -------CCCHHHHHhhCCEEEEcC----CCc------------CcCCHHHc---CCCCEEEeccc
Confidence 357888999999999975 542 22777775 47888887764
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.15 Score=46.97 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=101.3
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++.++|..+.. |+...+ .|.+.+.++-|+.- .|.|++-.+-...+ .++-+. -++--+|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~~----~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g 128 (296)
T PRK14188 53 KGKQTKEAGMASFEHKLPADTS----QAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAG 128 (296)
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHH
Confidence 35688999998644 333322 34566666666554 57888877643222 122111 11223341
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++=+ .|.|+++ .++|++|+++|-.+.+..-++..+..-|.+++++...
T Consensus 129 ~l~~~~~~~~PcTp~ai~-~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~r---------------- 191 (296)
T PRK14188 129 RLATGETALVPCTPLGCM-MLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSR---------------- 191 (296)
T ss_pred HHhCCCCCCcCCCHHHHH-HHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCC----------------
Confidence 12456899877755 4555555 7999999999988889888888887789988877321
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++++++||+|++-. +..+ .++..+ .++++++.-++-
T Consensus 192 ------T~~l~e~~~~ADIVIsav----g~~~------------~v~~~~---lk~GavVIDvGi 231 (296)
T PRK14188 192 ------TRDLPAVCRRADILVAAV----GRPE------------MVKGDW---IKPGATVIDVGI 231 (296)
T ss_pred ------CCCHHHHHhcCCEEEEec----CChh------------hcchhe---ecCCCEEEEcCC
Confidence 226788999999999974 4322 233333 457777777764
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.16 Score=46.61 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=105.5
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa-- 81 (261)
=..++..+|.......- .++ ..|.+.++++-++.- +|.|++-.+-...+ .++-+. -++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (286)
T PRK14175 53 KKKAAEKIGMISEIVHLEETA---TEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGK 129 (286)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHh
Confidence 45689999998765432 222 245677777777654 57888887743322 222111 12223442
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+.+ ++.+.++++ +++|++++++|-.+-|..-++.++...|++++++.-+
T Consensus 130 l~~~~~~~~PcTp~a-i~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~----------------- 191 (286)
T PRK14175 130 LYIDEQTFVPCTPLG-IMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR----------------- 191 (286)
T ss_pred HhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC-----------------
Confidence 124578996665 555666665 7999999999987779999988888889999888421
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+... +. +.-++.+.+ ++++++.-..-
T Consensus 192 -----t~~l~~~~~~ADIVIsAv----g~------------p~~i~~~~v---k~gavVIDvGi 231 (286)
T PRK14175 192 -----SKDMASYLKDADVIVSAV----GK------------PGLVTKDVV---KEGAVIIDVGN 231 (286)
T ss_pred -----chhHHHHHhhCCEEEECC----CC------------CcccCHHHc---CCCcEEEEcCC
Confidence 347888999999999985 42 112666654 56677777654
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.056 Score=49.84 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|= +++....+..+..||++++...|.... .|.. ....+++++++++|+|..-.
T Consensus 119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~-----------~~~~--~~~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 119 LLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVN-----------DGIS--SIYMEPEDIMKKSDFVLISL 181 (303)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc-----------cCcc--cccCCHHHHHhhCCEEEECC
Confidence 478999999994 788888888888899999988774211 1211 12458999999999999853
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.16 Score=46.77 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=104.2
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHHH--Hhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDILD--LAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~~--~a~~-------~~vPVINa- 81 (261)
=..++..+|..+... +... ..|.+.+.++-++.- .|.|++-.+-...+.+ +.+. -++--.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g 127 (295)
T PRK14174 52 KAKSCKEIGMNSTVIELPADT----TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLG 127 (295)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHH
Confidence 356889999987654 3332 245666777766554 5788887764332221 1111 01112331
Q ss_pred ---CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc----CCcEEEEeCCCCCCCCHHHHH
Q 024871 82 ---LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV----IPFHFVCACPKGFEPDKETVE 150 (261)
Q Consensus 82 ---~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~----~g~~~~~~~P~~~~~~~~~~~ 150 (261)
.+ ....||-+++ ++.+.++++ +++|+++++||-.+-|..=+..++.. -+.+++++...
T Consensus 128 ~l~~~~~~~~~~PcTp~a-il~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~---------- 196 (295)
T PRK14174 128 RLVMGHLDKCFVSCTPYG-ILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA---------- 196 (295)
T ss_pred HHhcCCCCCCcCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC----------
Confidence 12 4578998887 578888877 69999999999877777777666544 46777776421
Q ss_pred HHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 151 KARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 151 ~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+.-. |.. .-++.+++ ++++++.-..-
T Consensus 197 ------------t~~l~~~~~~ADIvI~Av----g~~------------~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 197 ------------TKDIPSYTRQADILIAAI----GKA------------RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred ------------chhHHHHHHhCCEEEEec----Ccc------------CccCHHHc---CCCCEEEEeec
Confidence 356889999999999975 431 22777776 67888877664
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.3 Score=44.80 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=106.2
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~-------~~vPVINa-- 81 (261)
=..++.++|....... +.++ ..|.+.+.++-|+.- +|.|++-.+-...+. ++-+. -++--+|.
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~ 123 (287)
T PRK14181 47 KVKKATDLGMVSKAHRLPSDA---TLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGK 123 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHH
Confidence 3568899999876543 2222 255677777777664 578888877433222 12111 11223342
Q ss_pred --CC--CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHH
Q 024871 82 --LT--DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 82 --~~--~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
.+ ....||-+++ ++.|.+++| .++|+++++||-.+-|..=+..++..- +.++++|.-
T Consensus 124 l~~g~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs------------- 189 (287)
T PRK14181 124 LLLGETDGFIPCTPAG-IIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHS------------- 189 (287)
T ss_pred HhcCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCC-------------
Confidence 12 3578996666 556667777 799999999998777888887776655 788887642
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|+.-. |. +.-|+.+++ ++++++.-++-
T Consensus 190 ---------~T~~l~~~~~~ADIvV~Av----G~------------p~~i~~~~i---k~GavVIDvGi 230 (287)
T PRK14181 190 ---------QSENLTEILKTADIIIAAI----GV------------PLFIKEEMI---AEKAVIVDVGT 230 (287)
T ss_pred ---------CCCCHHHHHhhCCEEEEcc----CC------------cCccCHHHc---CCCCEEEEecc
Confidence 1457899999999999975 54 233777775 47888887765
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.05 Score=44.64 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=62.9
Q ss_pred HHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCC
Q 024871 95 ALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGA 173 (261)
Q Consensus 95 l~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~a 173 (261)
++.+.+++| +++|++|+++|-.+.+..-++..+..-|++++.+.-. +.|+++++++|
T Consensus 15 ~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~----------------------t~~l~~~v~~A 72 (140)
T cd05212 15 VKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK----------------------TIQLQSKVHDA 72 (140)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC----------------------CcCHHHHHhhC
Confidence 345556666 6999999999987888888888887778888877421 23788999999
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
|+|.+-. +.. ..++.+.+ ++++++.-..+
T Consensus 73 DIVvsAt----g~~------------~~i~~~~i---kpGa~Vidvg~ 101 (140)
T cd05212 73 DVVVVGS----PKP------------EKVPTEWI---KPGATVINCSP 101 (140)
T ss_pred CEEEEec----CCC------------CccCHHHc---CCCCEEEEcCC
Confidence 9999975 321 22666665 46777776655
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.22 Score=45.53 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHHH--Hh------hhC-CC-cEE
Q 024871 13 RVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDILD--LA------KFA-TV-PVI 79 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~~--~a------~~~-~v-PVI 79 (261)
.-....++.++|....+..- .+. ..|.+.+.++-|... .+.|.+-.+-...+.+ +. +.. .+ |+
T Consensus 51 ~~~~~~~~~~~Gi~~~~~~l~~~~---~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~- 126 (283)
T PRK14192 51 VRMKGNACRRVGMDSLKVELPQET---TTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCL- 126 (283)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCcc-
Confidence 34567789999999876543 222 145577888877776 5677776653332222 22 211 22 55
Q ss_pred eCCCC------CCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHH
Q 024871 80 NGLTD------YNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 80 Na~~~------~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
| .|. ..-||-. .=++.+.++++ .++|++++++|-.+-+...++.++...|.+++++..+
T Consensus 127 n-~G~l~~~~~~~~p~T~-~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~------------ 192 (283)
T PRK14192 127 G-FGRMAMGEAAYGSATP-AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR------------ 192 (283)
T ss_pred c-cCccccCCCcccCCcH-HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC------------
Confidence 5 333 4567766 55666666766 6999999999986669999998888889988877421
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.++.+.+++||+|+.-.
T Consensus 193 ----------t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 193 ----------TQNLPELVKQADIIVGAV 210 (283)
T ss_pred ----------chhHHHHhccCCEEEEcc
Confidence 346777789999999975
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=46.67 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhh-------CCCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKF-------ATVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~-------~~vPVINa-- 81 (261)
=..++..+|..+....- .++ ..|.+.+.++-|+.- .|.|++-.+-...+. ++-+. -++-=.|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (285)
T PRK14189 53 KVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGA 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhH
Confidence 35688999998755432 111 245566666666554 577888776432221 11111 01112231
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+++ .+.|.++++ +++|++++++|-.+-|..-+..++...|+++++|.-
T Consensus 130 l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs------------------ 190 (285)
T PRK14189 130 LMTGQPLFRPCTPYG-VMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS------------------ 190 (285)
T ss_pred hhCCCCCCcCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC------------------
Confidence 124578997766 556666776 699999999998777888888888888999987631
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
-+.|+.+.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 191 ----~t~~l~~~~~~ADIVV~av----G~------------~~~i~~~~i---k~gavVIDVGi 231 (285)
T PRK14189 191 ----KTRDLAAHTRQADIVVAAV----GK------------RNVLTADMV---KPGATVIDVGM 231 (285)
T ss_pred ----CCCCHHHHhhhCCEEEEcC----CC------------cCccCHHHc---CCCCEEEEccc
Confidence 1458889999999999975 42 122666655 57888887774
|
|
| >TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.12 Score=51.10 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=93.7
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~ 93 (261)
.=...+|.++..+=| .|-|++|..+.=++.+.+++.|.......+.+.+.-++|.+...--+-+.| ..|+
T Consensus 182 rlL~~lGi~vn~v~p------~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~~T~~fL~~l~ 255 (511)
T TIGR01278 182 RLLKTLGIEVNVVAP------WGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVNATRRFIREIA 255 (511)
T ss_pred HHHHHCCCeEEEEeC------CCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHH
Confidence 345577888765422 477889998887778888777755555667777777899875311111222 2222
Q ss_pred HHH---H--------HHHH---------h------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCH
Q 024871 94 DAL---T--------IIEH---------V------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDK 146 (261)
Q Consensus 94 Dl~---T--------i~e~---------~------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~ 146 (261)
+++ - +.++ + ..+.|+|++++|| ..-+.++...+. -+|++++.++...-...+
T Consensus 256 ~~~~~~g~~~~~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElG~~vv~~gt~~~~~~~ 334 (511)
T TIGR01278 256 ALLNQAGADPYYESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGD-ATHAVGMTKILARELGIHIVGAGTYCKYDAD 334 (511)
T ss_pred HHHhhcCCCCcHHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcC-cHHHHHHHHHHHHhCCCEEEecCCchhhhHH
Confidence 322 0 0000 0 1278999999998 345667777776 699998877653322223
Q ss_pred HHHHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEeccc
Q 024871 147 ETVEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVWA 182 (261)
Q Consensus 147 ~~~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w~ 182 (261)
.+.+.++..+ ..+.+.+|..+ .++ +.|+|..+.|.
T Consensus 335 ~~~~~~~~~~-~~~~i~dD~~ei~~~i~~~~pdliiG~~~e 374 (511)
T TIGR01278 335 WVREQVAGYV-DEVLITDDFQEVADAIAALEPELVLGTQME 374 (511)
T ss_pred HHHHHHHhcC-CCeEEeCCHHHHHHHHHhcCCCEEEEChHH
Confidence 3333344444 35666777654 333 47899987653
|
This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=42.51 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=50.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-----------CCeEEEEcCHHHHhCCCCEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-----------ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------~~~i~~~~d~~~a~~~aDviy 177 (261)
||+++|- +|..+.++..++.-|.++++.+++. +..+..++.+ ..++..++|+++++++||+|+
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~-----~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDE-----EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCH-----HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEE
Confidence 7999995 8889999988888899998887754 4455454422 136788999999999999999
Q ss_pred Eecc
Q 024871 178 SDVW 181 (261)
Q Consensus 178 ~~~w 181 (261)
....
T Consensus 75 iavP 78 (157)
T PF01210_consen 75 IAVP 78 (157)
T ss_dssp E-S-
T ss_pred eccc
Confidence 8763
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.42 Score=45.92 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADA 95 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl 95 (261)
...=...+|.++... +..|-+++|.-+.-++-..+++.+.......+.+.+.-++|.++.. -.+..+...=|
T Consensus 184 i~~lL~~~Gl~v~~~------~~~~~~~~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~--p~G~~~t~~~l 255 (430)
T cd01981 184 LKRLLHTLGIEVNVV------IPEGASVDDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKIT--PIGVVATARFL 255 (430)
T ss_pred HHHHHHHcCCeEEEE------EcCCCCHHHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEecc--CCChHHHHHHH
Confidence 333445778877653 2346788888887777778776655555566777778899988751 22222222222
Q ss_pred HHHHHHh----------------------------------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCC
Q 024871 96 LTIIEHV----------------------------------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPK 140 (261)
Q Consensus 96 ~Ti~e~~----------------------------------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~ 140 (261)
-.|.+.+ ..+.|+|++++||.. -+.++...+. -+|++++.++-.
T Consensus 256 ~~i~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~l~gkrv~i~g~~~-~~~~l~~~L~~elG~~vv~~~~~ 334 (430)
T cd01981 256 REIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQNLTGKRAFVFGDAT-HVAAATRILAREMGFRVVGAGTY 334 (430)
T ss_pred HHHHHHhCCccccccCChhHHHHhccchhhhhhhhhhhhhhccccCCeEEEEcChH-HHHHHHHHHHHHcCCEEEeccCC
Confidence 2222211 237799999999843 6677777665 689988766543
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEecc
Q 024871 141 GFEPDKETVEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVW 181 (261)
Q Consensus 141 ~~~~~~~~~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w 181 (261)
.-...+......++.+ ..+.+.+|..+ .++ +.|+|+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~-~~~~i~~D~~e~~~~i~~~~pdliig~~~ 379 (430)
T cd01981 335 CKEDAKWFREQATGYC-DEALITDDHTEVGDMIARTEPELIFGTQM 379 (430)
T ss_pred CccHHHHHHHHHHhcC-CceEEecCHHHHHHHHHhhCCCEEEecch
Confidence 2222222212222233 23445566543 333 4788888753
|
Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.28 Score=45.26 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=101.4
Q ss_pred HHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC--
Q 024871 17 ETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING-- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa-- 81 (261)
..++..+|...... +++. ..|.+.+.++-|+.- +|.|++-.+-...+ .++-+. -++-=.|.
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~----t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 130 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLPADT----SQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGG 130 (301)
T ss_pred HHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhH
Confidence 45889999987543 3322 234556666666554 57888877633222 122111 01212342
Q ss_pred --CC-CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 --LT-DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 --~~-~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
.+ ....||-+++ ++.|.+++| +++|++|+++|-.+.|..-++..+..-|.+++++.-.
T Consensus 131 l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~----------------- 192 (301)
T PRK14194 131 LSQGRDVLTPCTPSG-CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSR----------------- 192 (301)
T ss_pred HhcCCCCCCCCcHHH-HHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCC-----------------
Confidence 12 3467997666 556666666 6999999999987889988888888889999888421
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++.+++++||+|++-. +.. -.|+.++ .++++++.-+.-
T Consensus 193 -----t~~l~e~~~~ADIVIsav----g~~------------~~v~~~~---ik~GaiVIDvgi 232 (301)
T PRK14194 193 -----STDAKALCRQADIVVAAV----GRP------------RLIDADW---LKPGAVVIDVGI 232 (301)
T ss_pred -----CCCHHHHHhcCCEEEEec----CCh------------hcccHhh---ccCCcEEEEecc
Confidence 237899999999999975 432 1244443 456777776663
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.28 Score=44.83 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=108.0
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++.++|..+... +... ..|.+.+.++-|+.- +|.|++-.+-.+.+ .++-+. -+.--+|.
T Consensus 47 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g 122 (279)
T PRK14178 47 KHRACERVGIGSVGIELPGDA----TTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLG 122 (279)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHH
Confidence 367899999987554 3332 245677777777664 57888877633222 111111 01112331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|++++++|-.+.+..-++.++...|.+++++.-.
T Consensus 123 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~---------------- 185 (279)
T PRK14178 123 RLVSGLPGFAPCTPNG-IMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK---------------- 185 (279)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC----------------
Confidence 124578997666 556667776 6999999999998889999888888889998887421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|+... +. +.-++.+++ ++++++.-..-
T Consensus 186 ------t~~L~~~~~~ADIvI~Av----gk------------~~lv~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 186 ------TENLKAELRQADILVSAA----GK------------AGFITPDMV---KPGATVIDVGI 225 (279)
T ss_pred ------hhHHHHHHhhCCEEEECC----Cc------------ccccCHHHc---CCCcEEEEeec
Confidence 357889999999999985 42 123777775 67888877665
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.14 Score=47.93 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..++|++|++||- +++.++++..+...|+++++..++.- ...+.+++.|. .. .++++++++||+|+...
T Consensus 13 ~~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~----~s~~~A~~~G~---~~-~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 13 SLIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGS----KSWKKAEADGF---EV-LTVAEAAKWADVIMILL 81 (330)
T ss_pred hhhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCch----hhHHHHHHCCC---ee-CCHHHHHhcCCEEEEcC
Confidence 3488999999995 78999999999899998876544321 22234555553 22 38899999999999864
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=43.15 Aligned_cols=97 Identities=26% Similarity=0.317 Sum_probs=64.3
Q ss_pred CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE
Q 024871 83 TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161 (261)
Q Consensus 83 ~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~ 161 (261)
.....||-+.+= +.|.++++ +++|+++++||-.+.|..-+..++..-|++++.+...
T Consensus 12 ~~~~~PcTp~ai-i~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------------------- 69 (160)
T PF02882_consen 12 QPGFVPCTPLAI-IELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------------------- 69 (160)
T ss_dssp TTSS--HHHHHH-HHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT---------------------
T ss_pred CCCCcCCCHHHH-HHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC---------------------
Confidence 457889976664 45556666 7999999999998889999988888889999887431
Q ss_pred EEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 162 ~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++++.+++||+|++-. |... -|+.+.+ ++++++.-++-
T Consensus 70 -T~~l~~~~~~ADIVVsa~----G~~~------------~i~~~~i---k~gavVIDvG~ 109 (160)
T PF02882_consen 70 -TKNLQEITRRADIVVSAV----GKPN------------LIKADWI---KPGAVVIDVGI 109 (160)
T ss_dssp -SSSHHHHHTTSSEEEE-S----SSTT-------------B-GGGS----TTEEEEE--C
T ss_pred -CCcccceeeeccEEeeee----cccc------------ccccccc---cCCcEEEecCC
Confidence 367889999999999986 4321 1555544 56778776654
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.31 Score=44.69 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa 81 (261)
+=..++..+|...... +... ..|.+.+.++-|+.= .|.|++-.+-.. .-.++-+.- ++-=.|.
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~ 126 (285)
T PRK14191 51 MKIKACERVGMDSDLHTLQENT----TEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNI 126 (285)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhH
Confidence 3456889999987554 3322 245566666666553 578888776432 222221110 1112331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+.+ ++.|.++++ .++|+++++||..+.|..-++.++..-|+++++|.-
T Consensus 127 g~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs---------------- 189 (285)
T PRK14191 127 GKLCSQLDGFVPATPMG-VMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI---------------- 189 (285)
T ss_pred HHHhcCCCCCCCCcHHH-HHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC----------------
Confidence 124568998877 456667776 699999999999888888888888788999987731
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+.+.+++||+|+.-. |.. --++.+++ ++++++.-.+-
T Consensus 190 ------~t~~l~~~~~~ADIvV~Av----G~p------------~~i~~~~v---k~GavVIDvGi 230 (285)
T PRK14191 190 ------LTKDLSFYTQNADIVCVGV----GKP------------DLIKASMV---KKGAVVVDIGI 230 (285)
T ss_pred ------CcHHHHHHHHhCCEEEEec----CCC------------CcCCHHHc---CCCcEEEEeec
Confidence 1356788999999999975 431 12666655 56777776664
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.44 Score=43.94 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 15 SFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
+=..++..+|.+.....- .++ ..|.+.++++-|+.- .|.|++-.+-...+ .++.+. -++--+|.
T Consensus 51 ~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g 127 (297)
T PRK14167 51 MKQRDCEEVGIEAIDVEIDPDA---PAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVG 127 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhH
Confidence 345689999998755432 222 245677777777765 47888887743322 222211 11222342
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHH
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
+...+.||-+++ ++.|.++++ .++|+++++||-.+-|..=++.++..- +.++++|.-+
T Consensus 128 ~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------ 194 (297)
T PRK14167 128 RLVAGDARFKPCTPHG-IQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------ 194 (297)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------
Confidence 124578996655 667777777 699999999998777888887766544 7888877421
Q ss_pred HHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 153 RKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. --|+.+++ ++++++.-.+-
T Consensus 195 ----------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~i---k~gaiVIDvGi 234 (297)
T PRK14167 195 ----------TDDLAAKTRRADIVVAAA----GVP------------ELIDGSML---SEGATVIDVGI 234 (297)
T ss_pred ----------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457888999999999964 532 23676665 46788877763
|
|
| >PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.18 Score=49.79 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~ 93 (261)
.=...+|.++..+-+ .|-|++|..+.-++.+.+++.|.......+.+.+.-++|.+...--+-+.| +.|+
T Consensus 182 rlL~~~Gi~vn~v~p------~g~s~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~T~~fL~~la 255 (519)
T PRK02910 182 RLLATLGIDVNVVAP------LGASPADLKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGATARFIREVA 255 (519)
T ss_pred HHHHHcCCeEEEEeC------CCCCHHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHHHHHHHHHHH
Confidence 345578888866532 478899999988888888777655555667777778899876311111222 3333
Q ss_pred HHHHHH----------H-H-------h------CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHH
Q 024871 94 DALTII----------E-H-------V------GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKET 148 (261)
Q Consensus 94 Dl~Ti~----------e-~-------~------g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~ 148 (261)
+++-+. + . + ..+.|++++++|| .--+.++...+. -+|++++.++-......+.+
T Consensus 256 ~~~g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd-~~~a~~l~~~L~~ElGm~vv~~gt~~~~~~~~~ 334 (519)
T PRK02910 256 ELLNLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGD-ATHAVAAARILSDELGFEVVGAGTYLREDARWV 334 (519)
T ss_pred HHhCCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcC-cHHHHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence 433220 0 0 1 2378999999998 335567777777 58999886654322333444
Q ss_pred HHHHHHhCCCeEEEEcCHHH---HhC--CCCEEEEecc
Q 024871 149 VEKARKAGISKIEITNDPKE---VVQ--GADVVYSDVW 181 (261)
Q Consensus 149 ~~~~~~~g~~~i~~~~d~~~---a~~--~aDviy~~~w 181 (261)
.+.+++.+ ..+.+++|..+ .++ +.|+|..+.+
T Consensus 335 ~~~~~~~~-~~~~i~~D~~el~~~i~~~~PdliiG~~~ 371 (519)
T PRK02910 335 RAAAKEYG-DEALITDDYLEVEDAIAEAAPELVLGTQM 371 (519)
T ss_pred HHHHHhcC-CCeEEecCHHHHHHHHHhcCCCEEEEcch
Confidence 44455555 45666777654 333 4788887643
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.31 Score=44.63 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeCC-
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVINGL- 82 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa~- 82 (261)
+=..++..+|.......-... ...|.+.+.++-|+.- +|.|++-.+-...+ .++-+. -++--+|.+
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 127 (282)
T PRK14166 50 SKAKACEECGIKSLVYHLNEN--TTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGY 127 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 345688999998765432211 1234466677766654 57888887643222 222111 112224521
Q ss_pred ---C--CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 83 ---T--DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 83 ---~--~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+ ....||-+.+ ++.|.++++ +++|+++++||-.+-|..=++.++..-++++++|.-.
T Consensus 128 l~~g~~~~~~PcTp~a-vi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~---------------- 190 (282)
T PRK14166 128 LNLGLESGFLPCTPLG-VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---------------- 190 (282)
T ss_pred HhcCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 2 3568997665 567777777 6999999999987778888887777778999877421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 191 ------T~nl~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~GavVIDvGi 230 (282)
T PRK14166 191 ------TKDLSLYTRQADLIIVAA----GCV------------NLLRSDMV---KEGVIVVDVGI 230 (282)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCc------------CccCHHHc---CCCCEEEEecc
Confidence 457889999999999975 542 22777765 47888888875
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.51 Score=43.16 Aligned_cols=161 Identities=13% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa 81 (261)
+=..++..+|..+... +.+. ..|.+.+.++-++.- .|.|++-.+-...+ .++-+. -++--.|.
T Consensus 50 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~ 125 (282)
T PRK14169 50 NKQRRAEDIGVRSLMFRLPEAT----TQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSV 125 (282)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhh
Confidence 3456889999987554 3332 244566666666553 47888877633222 222211 11223331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-+.++++|..+
T Consensus 126 g~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------------- 189 (282)
T PRK14169 126 GRLWANEPTVVASTPYG-IMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------------- 189 (282)
T ss_pred HHHhcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------
Confidence 124478998877 456667776 6999999999987778888887777779999888532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 190 -------T~~l~~~~~~ADIvI~Av----G~p-----------~~-i~~~~v---k~GavVIDvGi 229 (282)
T PRK14169 190 -------TRNLKQLTKEADILVVAV----GVP-----------HF-IGADAV---KPGAVVIDVGI 229 (282)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CCc-----------Cc-cCHHHc---CCCcEEEEeec
Confidence 357888999999999975 532 13 777765 46788877765
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.48 Score=43.40 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=105.6
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++..+|..+... +.+. ..|.+.+.+.-|+.= +|.|++-.+-...+ .++-+. -++-=+|.
T Consensus 52 k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g 127 (284)
T PRK14170 52 KQKRTEEAGMKSVLIELPENV----TEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVG 127 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhh
Confidence 356889999987554 3332 245566666666553 57888887643222 222111 01222331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 128 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------- 190 (284)
T PRK14170 128 NLFIGKDSFVPCTPAG-IIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------- 190 (284)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 124468998766 556667777 6999999999987778888877777778999988532
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 191 ------T~~l~~~~~~ADIvI~Av----G~~-----------~~-i~~~~v---k~GavVIDvGi 230 (284)
T PRK14170 191 ------TKDLPQVAKEADILVVAT----GLA-----------KF-VKKDYI---KPGAIVIDVGM 230 (284)
T ss_pred ------CCCHHHHHhhCCEEEEec----CCc-----------Cc-cCHHHc---CCCCEEEEccC
Confidence 357888999999999975 532 13 777775 46888888775
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.1 Score=41.20 Aligned_cols=161 Identities=20% Similarity=0.166 Sum_probs=104.9
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHH--HHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDIL--DLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~--~~a~~~-------~vPVINa-- 81 (261)
=..++..+|....... +.++ ..|.+.+.++-|+.- .|.|++-.+-...+. ++.+.- +.--.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~ 128 (286)
T PRK14184 52 KERACEDAGIVSEAFRLPADT---TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGR 128 (286)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHH
Confidence 3568999999876543 2211 245667777777654 578888776432221 111110 1112231
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc----CCcEEEEeCCCCCCCCHHHHHHHH
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV----IPFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~----~g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++.. -+++++++...
T Consensus 129 l~~~~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------- 194 (286)
T PRK14184 129 LALGLPGFRPCTPAG-VMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------- 194 (286)
T ss_pred HhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC-------------
Confidence 124468997774 667777777 69999999999877787777777666 57888877421
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|+.-. +. +.-|+.+++ ++++++.-..-
T Consensus 195 ---------t~~l~~~~~~ADIVI~Av----G~------------p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 195 ---------TPDLAEECREADFLFVAI----GR------------PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred ---------chhHHHHHHhCCEEEEec----CC------------CCcCCHHHc---CCCCEEEEeee
Confidence 357889999999999975 42 233777776 57788777664
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.62 Score=42.77 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=105.5
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa- 81 (261)
=..++..+|..+... +... ..|.+.+.+.-|+.- .|.|++-.+-.. .-.++.+.- ++-=+|.
T Consensus 50 k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g 125 (287)
T PRK14173 50 KDRQAKALGLRSQVEVLPEST----SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVG 125 (287)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhH
Confidence 456889999987554 3332 244566677766654 578888776432 222221110 1212331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 126 ~l~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------- 188 (287)
T PRK14173 126 RLWMGGEALEPCTPAG-VVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------- 188 (287)
T ss_pred HHhcCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC----------------
Confidence 124468996665 567777777 6999999999987778888877777778999888531
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 189 ------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~GavVIDVGi 228 (287)
T PRK14173 189 ------TQDLPAVTRRADVLVVAV----GRP------------HLITPEMV---RPGAVVVDVGI 228 (287)
T ss_pred ------CCCHHHHHhhCCEEEEec----CCc------------CccCHHHc---CCCCEEEEccC
Confidence 457889999999999975 532 22566665 47788877765
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.71 Score=42.24 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=105.9
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|..+.... +.++ ..|.+.++++-++.= .|.|++-.+-...+ .++-+.- ++--.|.
T Consensus 51 k~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 127 (282)
T PRK14182 51 KRKDCEEVGITSVEHHLPATT---TQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGA 127 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHH
Confidence 3678999999876543 2222 234566677666654 57888887743222 2221110 1112341
Q ss_pred --CCCC--CChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 --LTDY--NHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 --~~~~--~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
.++. .-||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|...
T Consensus 128 l~~g~~~~~~PcTp~a-vi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------- 190 (282)
T PRK14182 128 LSIGIAGVPRPCTPAG-VMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------- 190 (282)
T ss_pred HhCCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 1222 46886665 566777777 6999999999987878888888887778999887532
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 191 ------T~nl~~~~~~ADIvI~Av----Gk------------~~~i~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 191 ------TADLAGEVGRADILVAAI----GK------------AELVKGAWV---KEGAVVIDVGM 230 (282)
T ss_pred ------CCCHHHHHhhCCEEEEec----CC------------cCccCHHHc---CCCCEEEEeec
Confidence 457888999999999975 43 234777775 46788887765
|
|
| >PRK07579 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=46.40 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=60.4
Q ss_pred cEEEEEcCCCchHHHHHHH--HhcCCcEEEEeCCCCCCC--CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 108 TKVVYVGDGNNIVHSWLLM--ASVIPFHFVCACPKGFEP--DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~--~~~~g~~~~~~~P~~~~~--~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
+||.++|| +.+.++.+.. ...-.++|.++|+-.-+. +.+.. +.....+.+.++..+.++++|++++-.|.
T Consensus 2 k~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~DliVvvayg- 75 (245)
T PRK07579 2 KTILVLTD-NVHAHALAVDLIARKNDMDVDYFCSFKSQTSFAKEIY----QSPIKQLDVAERVAEIVERYDLVLSFHCK- 75 (245)
T ss_pred ceEEEEcc-cHHHHHHHHHHHhhccCcceEEEEeccCCcccccccc----cccccCcchhhhHHhhhcCCCEEEEchhh-
Confidence 68999998 6677776543 334456666666532221 11110 11123456778889999999999997642
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
..+.+++++.. .++=+|| ||.+||
T Consensus 76 ----------------~ilp~~iL~~~--~~iNiHpSLLP~yRG 101 (245)
T PRK07579 76 ----------------QRFPAKLVNGV--RCINIHPGFNPYNRG 101 (245)
T ss_pred ----------------ccCCHHHHhhC--CEEEEcCCcCCCCCC
Confidence 33667777654 4899998 799886
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.79 Score=42.27 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa 81 (261)
+=..++..+|...... +... ..|.+.+.+.-|+.= .|.|++-.+-...+ .++-+.- ++-=.|.
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~ 127 (297)
T PRK14186 52 NKEKACARVGIASFGKHLPADT----SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNL 127 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhH
Confidence 3456889999987644 3332 244566666666553 57888877643222 2221110 1111331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+++ ++.|.+++| .++|+++++||-.+-|..=+..++..-|+++++|...
T Consensus 128 g~l~~~~~~~~PcTp~a-ii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------- 191 (297)
T PRK14186 128 GRLVKGEPGLRSCTPAG-VMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------- 191 (297)
T ss_pred HHHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------
Confidence 123478997665 667777777 6999999999987778888887777779999888532
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |. +.-++.+++ ++++++.-++-
T Consensus 192 -------T~~l~~~~~~ADIvIsAv----Gk------------p~~i~~~~i---k~gavVIDvGi 231 (297)
T PRK14186 192 -------TQDLASITREADILVAAA----GR------------PNLIGAEMV---KPGAVVVDVGI 231 (297)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CC------------cCccCHHHc---CCCCEEEEecc
Confidence 347888899999999975 53 223666665 46777777664
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.85 Score=41.67 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=105.7
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch--HHHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD--ILDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~--~~~~a~~~-------~vPVINa- 81 (261)
=..++.++|.++... +.+. ..|.+.++++-|+.- .|.|++-.+-... -.++.+.- ++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g 128 (278)
T PRK14172 53 QEKVANSLGIDFKKIKLDESI----SEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVG 128 (278)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHH
Confidence 367899999987654 3332 235577777777654 5788887763322 22222110 1112241
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.|.++++ .++|+++++||-.+-|..=+..++..-|+++++|.-+
T Consensus 129 ~l~~g~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------- 191 (278)
T PRK14172 129 KFYKGEKCFLPCTPNS-VITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------- 191 (278)
T ss_pred HHhCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC----------------
Confidence 123478996655 566777777 6999999999987778888887777778999888521
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+..++||+|++-. |.. .-++.+++ ++++++.-.+-
T Consensus 192 ------T~~l~~~~~~ADIvIsAv----Gkp------------~~i~~~~i---k~gavVIDvGi 231 (278)
T PRK14172 192 ------TKNLKEVCKKADILVVAI----GRP------------KFIDEEYV---KEGAIVIDVGT 231 (278)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCc------------CccCHHHc---CCCcEEEEeec
Confidence 457888999999999975 531 22777775 47788877764
|
|
| >PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.31 Score=44.91 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCC-----CC-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKG-----FE-PDKETVEKARKAGISKIEITNDP-----KEVV--QGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~a 173 (261)
+||+|+|...-....+-.+.. .+..-.+++.|+. .. ....+.+.|+++|+..++ ..++ .+.+ .+.
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~-~~~~~~~~~~~~l~~~~~ 79 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQ-PEKLRDPEFLAELAALNA 79 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEEC-cCCCCCHHHHHHHHhcCc
Confidence 489999975332333333322 2233333444542 11 133456778888864322 2221 1222 277
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
|++++-.| .+.|.+++++..+..++-+|| ||.+||.
T Consensus 80 Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpslLP~yRG~ 117 (309)
T PRK00005 80 DVIVVVAY-----------------GQILPKAVLDIPRLGCINLHASLLPRWRGA 117 (309)
T ss_pred CEEEEehh-----------------hcccCHHHHhcCCCCEEEEeCcccccCCCc
Confidence 88888654 255888899888878999999 7888853
|
|
| >CHL00076 chlB photochlorophyllide reductase subunit B | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.8 Score=45.31 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=91.7
Q ss_pred HHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhH----HHHH
Q 024871 19 GFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQ----IMAD 94 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ----~L~D 94 (261)
=...+|.++..+= ..|-|++|..+.-++.+++++-|.......+.+.+.-++|.+...-=+-+.|. .|++
T Consensus 188 LL~~~Gi~vn~v~------~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~~T~~fLr~la~ 261 (513)
T CHL00076 188 LLQDLGIEINQII------PEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIVDTAECIRQIQK 261 (513)
T ss_pred HHHHCCCeEEEEE------CCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCHHHHHHHHHHHHH
Confidence 3456777776332 23668899998888888888877666667778888889998873111222222 2222
Q ss_pred HHH---------------HHHHh----------------CCCCCcEEEEEcCCCchHHHHHHHH-hcCCcEEEEeCCCCC
Q 024871 95 ALT---------------IIEHV----------------GRLEGTKVVYVGDGNNIVHSWLLMA-SVIPFHFVCACPKGF 142 (261)
Q Consensus 95 l~T---------------i~e~~----------------g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~~~~~~~P~~~ 142 (261)
++- +.+.. ..|.|+|++++||.. -+.++...+ .-+|+.++.++-..-
T Consensus 262 ~lg~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~-~a~~l~~~L~~ELGm~vv~~g~~~~ 340 (513)
T CHL00076 262 ILNKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNLTGKKAVVFGDAT-HAASMTKILAREMGIRVSCAGTYCK 340 (513)
T ss_pred HhCCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhccccCCCEEEEEcCch-HHHHHHHHHHHhCCCEEEEecCccc
Confidence 211 11111 257899999999943 444555444 468999876542111
Q ss_pred CCCHHHHHHHHHhCCCeEEEEcCHH---HHhCC--CCEEEEecccC
Q 024871 143 EPDKETVEKARKAGISKIEITNDPK---EVVQG--ADVVYSDVWAS 183 (261)
Q Consensus 143 ~~~~~~~~~~~~~g~~~i~~~~d~~---~a~~~--aDviy~~~w~~ 183 (261)
...+.+.+.++..+ ..+.+++|.. +.+++ .|+|..+.|.+
T Consensus 341 ~~~~~~~~~~~~~~-~~~~i~~D~~ei~~~I~~~~pdliiGs~~er 385 (513)
T CHL00076 341 HDAEWFKEQVQGFC-DEILITDDHTEVGDMIARVEPSAIFGTQMER 385 (513)
T ss_pred chhHHHHHHHHHhc-cCcEEecCHHHHHHHHHhcCCCEEEECchhh
Confidence 11222233444444 3445566654 34444 79999887654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.65 Score=42.61 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa 81 (261)
+=..++.++|...... +.+. ..|.+.+.++-|+.- .|.|++-.+-...+ .++.+. -++-=+|.
T Consensus 58 ~k~k~~~~~Gi~~~~~~l~~~~----~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~ 133 (287)
T PRK14176 58 LKHKACERVGIRAEDQFLPADT----TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNM 133 (287)
T ss_pred HHHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhh
Confidence 4467899999987554 3332 255677777777664 57888887643222 112111 01222331
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 -----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 -----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+.....||-+.+ ++.+.++++ .++|++++++|-.+-|..-++.++..-|+++++|.-
T Consensus 134 g~l~~g~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs---------------- 196 (287)
T PRK14176 134 GKLMIGDEGLVPCTPHG-VIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV---------------- 196 (287)
T ss_pred hhHhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec----------------
Confidence 123468996665 556666666 699999999998777888888888888999988852
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|+.-. |.. .-++.+++ ++++++.-++-
T Consensus 197 ------~T~~l~~~~~~ADIvv~Av----G~p------------~~i~~~~v---k~gavVIDvGi 237 (287)
T PRK14176 197 ------FTDDLKKYTLDADILVVAT----GVK------------HLIKADMV---KEGAVIFDVGI 237 (287)
T ss_pred ------cCCCHHHHHhhCCEEEEcc----CCc------------cccCHHHc---CCCcEEEEecc
Confidence 1457888999999999854 431 22566654 46777777665
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.22 Score=42.03 Aligned_cols=75 Identities=24% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 84 DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
..++||=+.+=+--+++.+++++|++++++|-+.-+....+..+...|.+++++... +
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~----------------------~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK----------------------T 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC----------------------c
Confidence 578999887777666677778999999999974334555777777778887766421 2
Q ss_pred cCHHHHhCCCCEEEEec
Q 024871 164 NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~ 180 (261)
+++.+.+++||+|++-.
T Consensus 79 ~~l~~~l~~aDiVIsat 95 (168)
T cd01080 79 KNLKEHTKQADIVIVAV 95 (168)
T ss_pred hhHHHHHhhCCEEEEcC
Confidence 46788999999999975
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.72 Score=42.18 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC-
Q 024871 15 SFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa- 81 (261)
+=..++.++|....... +.++ ..|.+.+.+.-|+.- .|.|++-.+-...+ .++.+.- ++--+|.
T Consensus 51 ~k~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g 127 (281)
T PRK14183 51 MKAKACDRVGIYSITHEMPSTI---SQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG 127 (281)
T ss_pred HHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh
Confidence 34568899999875443 2222 244577777777654 57888877643222 2222111 1112442
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+.+ ++.|.++++ +++|+++++||-.+-|..=++.++..-|.++++|.-
T Consensus 128 ~l~~g~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs----------------- 189 (281)
T PRK14183 128 RLVTGLDGFVPCTPLG-VMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI----------------- 189 (281)
T ss_pred HHhcCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC-----------------
Confidence 124578997665 567777777 699999999998777777777777667899887632
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 190 -----~T~~l~~~~~~ADIvV~Av----Gkp------------~~i~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 190 -----FTKDLKAHTKKADIVIVGV----GKP------------NLITEDMV---KEGAIVIDIGI 230 (281)
T ss_pred -----CCcCHHHHHhhCCEEEEec----Ccc------------cccCHHHc---CCCcEEEEeec
Confidence 1457888999999999975 542 12666664 46777777763
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.71 Score=42.32 Aligned_cols=159 Identities=16% Similarity=0.105 Sum_probs=101.8
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~~vPVINa- 81 (261)
=..++..+|.++..+ +.+. ..|.+.+.+.-++.- .|.|++--+-...+ .++.+. -++--.|.
T Consensus 54 k~k~a~~~Gi~~~~~~l~~~~----s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g 129 (285)
T PRK10792 54 KRKACEEVGFVSRSYDLPETT----SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVG 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHh
Confidence 356888999987554 3222 234555555555554 57888876633221 222111 01222331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-+++ ++.+.|+++ +++|++++++|-.+-|..-+..++..-|.++++|.-.
T Consensus 130 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~---------------- 192 (285)
T PRK10792 130 RLAQRIPLLRPCTPRG-IMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF---------------- 192 (285)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC----------------
Confidence 124468996665 556666666 6999999999987778998988888889999888421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.|+++.+++||+|+... |... .++.+.+ ++++++.-++
T Consensus 193 ------T~~l~~~~~~ADIvi~av----G~p~------------~v~~~~v---k~gavVIDvG 231 (285)
T PRK10792 193 ------TKNLRHHVRNADLLVVAV----GKPG------------FIPGEWI---KPGAIVIDVG 231 (285)
T ss_pred ------CCCHHHHHhhCCEEEEcC----CCcc------------cccHHHc---CCCcEEEEcc
Confidence 457899999999999985 5321 2555443 5677777766
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.094 Score=44.18 Aligned_cols=67 Identities=27% Similarity=0.336 Sum_probs=46.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|++++|+++|-+ +-.|+.+.-+.--|.++++.--++ ....+++++.|. + ..+++||+++||+|+...
T Consensus 2 l~~k~IAViGyG-sQG~a~AlNLrDSG~~V~Vglr~~----s~s~~~A~~~Gf---~-v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 2 LKGKTIAVIGYG-SQGHAHALNLRDSGVNVIVGLREG----SASWEKAKADGF---E-VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp HCTSEEEEES-S-HHHHHHHHHHHHCC-EEEEEE-TT----CHHHHHHHHTT----E-CCEHHHHHHC-SEEEE-S
T ss_pred cCCCEEEEECCC-hHHHHHHHHHHhCCCCEEEEecCC----CcCHHHHHHCCC---e-eccHHHHHhhCCEEEEeC
Confidence 579999999975 447777777777799988765433 235577888883 3 347899999999999974
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.74 Score=42.20 Aligned_cols=161 Identities=17% Similarity=0.093 Sum_probs=104.8
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|..+....- .++ ..|.+.++++-++.= +|.|++-.+-...+ ..+.+.- ++-=.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (284)
T PRK14190 53 KKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGR 129 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHH
Confidence 36789999998765432 212 244566777766554 56777776633222 1121110 1111221
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-+++ ++.|.++++ +++|+++++||-.+-|..=+..++..-+.++++|..
T Consensus 130 l~~~~~~~~PcTp~a-v~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs------------------ 190 (284)
T PRK14190 130 MMLGQDTFLPCTPHG-ILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS------------------ 190 (284)
T ss_pred HhcCCCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC------------------
Confidence 124478997666 556677777 699999999998777888888877777899988742
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
-+.|+++.+++||+|++-. |.. .-++.+.+ ++++++.-++-
T Consensus 191 ----~t~~l~~~~~~ADIvI~Av----G~p------------~~i~~~~i---k~gavVIDvGi 231 (284)
T PRK14190 191 ----KTKNLAELTKQADILIVAV----GKP------------KLITADMV---KEGAVVIDVGV 231 (284)
T ss_pred ----CchhHHHHHHhCCEEEEec----CCC------------CcCCHHHc---CCCCEEEEeec
Confidence 1457889999999999975 431 23777776 57788887764
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.66 Score=42.48 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=108.0
Q ss_pred CCChhhHH-HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------
Q 024871 7 KPSMRTRV-SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA------- 74 (261)
Q Consensus 7 ~~StRTR~-SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~------- 74 (261)
.|+.++-. +=..++.++|..+....-... ...|.+.+.+.-|+.- .|.|++-.+-...+ .++.+.-
T Consensus 42 d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVD 119 (282)
T PRK14180 42 DPASKTYVASKEKACAQVGIDSQVITLPEH--TTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVD 119 (282)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcccccc
Confidence 33444333 345689999998755432111 1245566666666554 57888876633222 1221110
Q ss_pred CCcEEeC-----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 75 TVPVING-----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 75 ~vPVINa-----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
++--.|. + .....||-+.+ ++.|.|+++ .++|+++++||-.+-|..=++.++..-++++++|.-
T Consensus 120 Gl~~~n~g~l~~g~~~~~~PcTp~a-ii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs-------- 190 (282)
T PRK14180 120 GFHPTNVGRLQLRDKKCLESCTPKG-IMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR-------- 190 (282)
T ss_pred ccChhhHHHHhcCCCCCcCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC--------
Confidence 1212231 1 24568996655 566777777 699999999998777888887777677899988742
Q ss_pred HHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 148 TVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 148 ~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.+.|+.+.+++||+|++-. |.. .| ++.+++ ++++++.-++-
T Consensus 191 --------------~T~dl~~~~k~ADIvIsAv----Gkp-----------~~-i~~~~v---k~gavVIDvGi 231 (282)
T PRK14180 191 --------------FTTDLKSHTTKADILIVAV----GKP-----------NF-ITADMV---KEGAVVIDVGI 231 (282)
T ss_pred --------------CCCCHHHHhhhcCEEEEcc----CCc-----------Cc-CCHHHc---CCCcEEEEecc
Confidence 1457888899999999975 532 13 777665 47888888775
|
|
| >TIGR00460 fmt methionyl-tRNA formyltransferase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.38 Score=44.43 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=59.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCC-----CC-CCHHHHHHHHHhCCCeEEEEcCHH--HH---h--CC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKG-----FE-PDKETVEKARKAGISKIEITNDPK--EV---V--QG 172 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~~d~~--~a---~--~~ 172 (261)
+||+|+|...--..++-.+.. -|.++ ++..|+. .. ....+.+.|+++|+.-+. ..+.. +. + .+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~-~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~-~~~~~~~~~~~~l~~~~ 78 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRE-DNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQ-PEKQRQLEELPLVRELK 78 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEe-cCCCCcHHHHHHHHhhC
Confidence 489999975444444444333 23433 3434532 11 133466778888864332 22221 22 2 27
Q ss_pred CCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 173 ADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 173 aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.|++++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 79 ~Dliv~~~~-----------------~~iip~~il~~~~~g~iNiHpSlLP~yRG~ 117 (313)
T TIGR00460 79 PDVIVVVSF-----------------GKILPKEFLDLFPYGCINVHPSLLPRWRGG 117 (313)
T ss_pred CCEEEEccc-----------------hhhCCHHHHhhccCCEEEecCccccCCCCc
Confidence 788887654 245888899888888999999 8988853
|
The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.87 Score=41.98 Aligned_cols=161 Identities=17% Similarity=0.086 Sum_probs=103.7
Q ss_pred HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++.++|....... +.++ ..|.+.+.+.-++.- .|.|++-.+-.. .-.++-+.- ++-=+|.
T Consensus 54 k~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 130 (297)
T PRK14168 54 KIKTAHRLGFHEIQDNQSVDI---TEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGR 130 (297)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHH
Confidence 3578999999876543 2222 345667777777665 578888876332 222221110 1112231
Q ss_pred --CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHH
Q 024871 82 --LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 82 --~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~ 151 (261)
.+ ....||-+++ ++.|.+++| .++|+++++||-.+-|..=++.++..- +.++++|.-+
T Consensus 131 l~~~~~~~~~~PcTp~a-vi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~----------- 198 (297)
T PRK14168 131 LMIGGDEVKFLPCTPAG-IQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR----------- 198 (297)
T ss_pred HhcCCCCCCCcCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-----------
Confidence 12 3578997666 556667776 699999999998777777776666554 6888877421
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 199 -----------T~~l~~~~~~ADIvVsAv----Gkp------------~~i~~~~i---k~gavVIDvGi 238 (297)
T PRK14168 199 -----------SKNLARHCQRADILIVAA----GVP------------NLVKPEWI---KPGATVIDVGV 238 (297)
T ss_pred -----------CcCHHHHHhhCCEEEEec----CCc------------CccCHHHc---CCCCEEEecCC
Confidence 357888999999999975 532 22677765 47888888774
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.39 Score=41.64 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=75.1
Q ss_pred CCChhHHHHHHHHHHHHhC----------CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 85 YNHPCQIMADALTIIEHVG----------RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 85 ~~HPtQ~L~Dl~Ti~e~~g----------~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
..-||-+++ ++.|.|+++ +++|+++++||..+-|..=++.++..-|+++++|.-++.+.-.... .. +
T Consensus 31 ~~~PCTp~a-vi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~-~~-~ 107 (197)
T cd01079 31 SILPCTPLA-IVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGE-SI-R 107 (197)
T ss_pred CccCCCHHH-HHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccccc-cc-c
Confidence 457887776 445555554 5999999999998888888888887789999988433432200000 00 0
Q ss_pred hCCCe-EEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 155 AGISK-IEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 155 ~g~~~-i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+-... -..+.++.+.+++||+|++-. |.. .|.|+.+++ ++++++.-.+-
T Consensus 108 hs~t~~~~~~~~l~~~~~~ADIVIsAv----G~~-----------~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 108 HEKHHVTDEEAMTLDCLSQSDVVITGV----PSP-----------NYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred cccccccchhhHHHHHhhhCCEEEEcc----CCC-----------CCccCHHHc---CCCcEEEEcCC
Confidence 00000 001122778999999999975 542 356888876 47889988875
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.26 Score=44.05 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=53.3
Q ss_pred CCCcEEEEEcCC--CchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhC----CCeEEEEcCHHHHhCCCCEEE
Q 024871 105 LEGTKVVYVGDG--NNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAG----ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 105 l~~~~i~~vGd~--~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g----~~~i~~~~d~~~a~~~aDviy 177 (261)
+++.+|+.|..- .|+. |.+.++..||+ +++++.|... ++++-.. ...| ..+-.++++++||+.|+|++|
T Consensus 2 ~~~i~iVLVep~~~gNIG-~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a--~A~gA~dile~A~i~~tL~eAl~d~~~v~ 77 (242)
T COG0565 2 LENIRIVLVEPSHPGNIG-SVARAMKNFGLSELRLVNPRAG-LDEEARA--LAAGARDILENAKIVDTLEEALADCDLVV 77 (242)
T ss_pred CCccEEEEEcCCCCccHH-HHHHHHHhCCcceEEEECCCCC-CCHHHHH--HhccchhhhccCeeecCHHHHhcCCCEEE
Confidence 568899999973 5654 56777888997 8999999776 5555432 2233 134467999999999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.++
T Consensus 78 aTt 80 (242)
T COG0565 78 ATT 80 (242)
T ss_pred Eec
Confidence 986
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.3 Score=37.47 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. ++++...+..+...|.++++++|.. +. ++ +.-.+. ....++-++++|+|+..+
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~-----~~---~~--~~i~~~-~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI-----EF---SE--GLIQLI-RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE-----HH---HH--TSCEEE-ESS-GGGCTTESEEEE-S
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch-----hh---hh--hHHHHH-hhhHHHHHhhheEEEecC
Confidence 588999999997 8899999999999999999999975 11 12 211222 334566799999999875
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.24 Score=46.24 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..|+|++|++||= +++.+..+..+..+|+++++.-++. . ..+.+...|. +. .++++++++||+|.+..
T Consensus 12 ~~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~--~---s~~~A~~~G~---~v-~sl~Eaak~ADVV~llL 79 (335)
T PRK13403 12 ELLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPG--K---SFEVAKADGF---EV-MSVSEAVRTAQVVQMLL 79 (335)
T ss_pred hhhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcc--h---hhHHHHHcCC---EE-CCHHHHHhcCCEEEEeC
Confidence 4589999999994 7888888888889999987764331 1 1223445553 32 38999999999999974
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.28 Score=42.49 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC--HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND--PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d--~~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. +.++.+.+..+...|.++++++|. +.+++.+.+.+ + .+.+... .++.+.++|+|+.-+
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~---~~~~l~~l~~~-~--~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPE---LTENLVKLVEE-G--KIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC---CCHHHHHHHhC-C--CEEEEecCCChhhcCCceEEEEcC
Confidence 589999999996 889999888888889999999983 34444444333 3 2333222 244689999998864
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.18 Score=46.74 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|+|+||++|| .+++.++++..+...|+++++..++.- +..+.+.+.|. +.. +.+++++++|+|+.-.
T Consensus 1 l~~kkIgiIG-~G~mG~AiA~~L~~sG~~Viv~~~~~~----~~~~~a~~~Gv---~~~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 1 LKGKTVAIIG-YGSQGHAQALNLRDSGLNVIVGLRKGG----ASWKKATEDGF---KVG-TVEEAIPQADLIMNLL 67 (314)
T ss_pred CCcCEEEEEe-EcHHHHHHHHHHHHCCCeEEEEECcCh----hhHHHHHHCCC---EEC-CHHHHHhcCCEEEEeC
Confidence 5789999999 488999999999888988766554321 22344455553 333 5788999999999864
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.9 Score=40.32 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcC-----------CCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 13 RVSFETGFSLLGGHAIYLGPDDIQ-----------MGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 13 R~SFe~A~~~LGg~~~~l~~~~s~-----------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
......=...+|.+++.+..-..+ +..|-|++|..+.=++-..+++-+.......+.+.+.-++|.+..
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~ 255 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETL 255 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeec
Confidence 345555677899999875431111 224788999888766666666544344455667777789998885
Q ss_pred C-CCCCChhHH----HHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 82 L-TDYNHPCQI----MADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 82 ~-~~~~HPtQ~----L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
. --+-+.|.. |++++- +.+. +..++|+|+++.||. ..+.++...+.-+|+++..+.-
T Consensus 256 ~~p~G~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~-~~~~~la~~L~elGm~v~~~~~ 334 (435)
T cd01974 256 NMPIGVAATDEFLMALSELTGKPIPEELEEERGRLVDAMTDSHQYLHGKKFALYGDP-DFLIGLTSFLLELGMEPVHVLT 334 (435)
T ss_pred CCCcChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCh-HHHHHHHHHHHHCCCEEEEEEe
Confidence 3 222333322 223221 1111 124789999999984 3467777777789998865442
Q ss_pred CCCCC--CHHHHHHHHHh--C-CCeEEEEcCHH---HHhC--CCCEEEEecc
Q 024871 140 KGFEP--DKETVEKARKA--G-ISKIEITNDPK---EVVQ--GADVVYSDVW 181 (261)
Q Consensus 140 ~~~~~--~~~~~~~~~~~--g-~~~i~~~~d~~---~a~~--~aDviy~~~w 181 (261)
..... .+++...+++. + ...+....|+. +.++ +.|+++...|
T Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~ 386 (435)
T cd01974 335 GNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY 386 (435)
T ss_pred CCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 11111 22233333332 1 12344445543 3332 4788887754
|
The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.5 Score=40.20 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=108.9
Q ss_pred CChhhHHH-HHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh-------C
Q 024871 8 PSMRTRVS-FETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF-------A 74 (261)
Q Consensus 8 ~StRTR~S-Fe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~-------~ 74 (261)
|+.++-.. =..++..+|....... +.++ ..|.+.+.++-|+.= .|.|++-.+-...+ .++-+. -
T Consensus 45 ~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVD 121 (284)
T PRK14177 45 PASETYVSMKVKACHKVGMGSEMIRLKEQT---TTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVD 121 (284)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccc
Confidence 34444433 3678999999876543 2211 245566666666653 57888877643222 222111 0
Q ss_pred CCcEEeC-----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH
Q 024871 75 TVPVING-----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET 148 (261)
Q Consensus 75 ~vPVINa-----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~ 148 (261)
++--+|. +.....||-+++ ++.|.|+++ +++|+++++||-.+-|..=+..++..-++++++|...
T Consensus 122 Gl~~~n~g~l~~g~~~~~PcTp~a-vi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------- 192 (284)
T PRK14177 122 GVTTLSFGKLSMGVETYLPCTPYG-MVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------- 192 (284)
T ss_pred cCChhhHHHHHcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------
Confidence 1112342 124578997755 556777776 6999999999987778888888777778999988531
Q ss_pred HHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 149 VEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 149 ~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |.. .-++.+++ ++++++.-++-
T Consensus 193 --------------T~~l~~~~~~ADIvIsAv----Gk~------------~~i~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 193 --------------TQNLPSIVRQADIIVGAV----GKP------------EFIKADWI---SEGAVLLDAGY 232 (284)
T ss_pred --------------CCCHHHHHhhCCEEEEeC----CCc------------CccCHHHc---CCCCEEEEecC
Confidence 457888999999999975 532 22677665 47778887775
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.2 Score=41.89 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=103.1
Q ss_pred HHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhhC-------CCcEEeC--
Q 024871 16 FETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKFA-------TVPVING-- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa-- 81 (261)
=..++..+|.+.....- .++ ..|.+.+.+.-|+.= .|.|++-.+-.. .-.++.+.- +.-=+|.
T Consensus 107 k~K~a~~~GI~~~~~~l~~~~---te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~ 183 (345)
T PLN02897 107 KIKACEETGIKSLLAELPEDC---TEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGN 183 (345)
T ss_pred HHHHHHhcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHH
Confidence 35688999998765432 211 234466666666543 578888776332 222222211 1112231
Q ss_pred --C---CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 --L---TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 --~---~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
. .....||-+.+=+ .|.++++ .++|+++++||-.+-|..=+..++..-++++++|.-.
T Consensus 184 L~~~~~~~~~~PCTp~avi-~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------------- 247 (345)
T PLN02897 184 LAMRGREPLFVSCTPKGCV-ELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------------- 247 (345)
T ss_pred HhcCCCCCCCcCCCHHHHH-HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------
Confidence 1 2356899877744 4556666 6999999999987777777777777778999887421
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. .-|+.+++ ++++++.-.+-
T Consensus 248 -------T~nl~~~~~~ADIvIsAv----Gkp------------~~v~~d~v---k~GavVIDVGi 287 (345)
T PLN02897 248 -------TKDPEQITRKADIVIAAA----GIP------------NLVRGSWL---KPGAVVIDVGT 287 (345)
T ss_pred -------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457888999999999975 542 22777775 47888887765
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.9 Score=39.66 Aligned_cols=159 Identities=14% Similarity=0.065 Sum_probs=103.0
Q ss_pred HHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC--
Q 024871 17 ETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING-- 81 (261)
Q Consensus 17 e~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa-- 81 (261)
..++..+|..... ++... ..|.+.+.++-|+.- +|.|++-.+-...+ .++.+.- ++-=+|.
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~----~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~ 128 (293)
T PRK14185 53 VKACEECGFKSSLIRYESDV----TEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGR 128 (293)
T ss_pred HHHHHHcCCEEEEEECCCCC----CHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHH
Confidence 5689999998854 43332 245677777777654 57888877643222 2222110 1112342
Q ss_pred ---CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC----CcEEEEeCCCCCCCCHHHHHHHH
Q 024871 82 ---LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI----PFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 82 ---~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~----g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
+.....||-+++= +.|.++++ .++|+++++||-.+-|..=+..++..- ++++++|.-+
T Consensus 129 l~~~~~~~~PcTp~av-~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------- 194 (293)
T PRK14185 129 MSIGLPCFVSATPNGI-LELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------- 194 (293)
T ss_pred HhCCCCCCCCCCHHHH-HHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------
Confidence 1245789988774 45666666 699999999998777777776666543 7888877432
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+.+.+++||+|++-. |.. --++.+++ ++++++.-++-
T Consensus 195 ---------T~nl~~~~~~ADIvIsAv----Gkp------------~~i~~~~v---k~gavVIDvGi 234 (293)
T PRK14185 195 ---------SKNLKKECLEADIIIAAL----GQP------------EFVKADMV---KEGAVVIDVGT 234 (293)
T ss_pred ---------CCCHHHHHhhCCEEEEcc----CCc------------CccCHHHc---CCCCEEEEecC
Confidence 357888999999999975 542 22677665 47888887765
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.33 Score=45.21 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=50.4
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEE---EcCHHHHhCCCCE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEI---TNDPKEVVQGADV 175 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~---~~d~~~a~~~aDv 175 (261)
.+|.-...||+++|-.++|..+++.++...+. +++++-.+. +..+.++.........+.- .+|+.++++|+|+
T Consensus 12 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 12 AKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred cccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 35666678999999878999999888775443 777776544 3332233221111112321 3456889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 90 VVitA 94 (323)
T PLN00106 90 VIIPA 94 (323)
T ss_pred EEEeC
Confidence 99874
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.83 Score=39.66 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=49.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-C-HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-D-PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d-~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. +.++-..+..+...|.++++++|+ +.+++.+.+ +.| .+++.. + ..+-++++|+|+.-+
T Consensus 6 ~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~---~~~~l~~l~-~~~--~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 6 NLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEE---LESELTLLA-EQG--GITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred EcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHH-HcC--CEEEEeCCCCHHHhCCcEEEEECC
Confidence 478999999995 788888888888899999999995 334444433 333 344422 1 244589999998864
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.3 Score=39.03 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc--hHHHHhhh-------CCCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ--DILDLAKF-------ATVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~--~~~~~a~~-------~~vPVINa- 81 (261)
=..+|..+|.++... +...+ .|.+.+.++-|+.= .|.|++-.+-.. .-.++.+. -++--.|.
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~t----~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g 128 (284)
T PRK14193 53 KHRDCAEVGITSIRRDLPADAT----QEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLG 128 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhh
Confidence 356889999987544 33322 34466666666553 578888776432 22222111 11223342
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
+.....||-+.+ ++.|.+++| .++|+++++||-.+-|..=+..++.. -++++++|.-+
T Consensus 129 ~l~~~~~~~~PcTp~a-v~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------- 193 (284)
T PRK14193 129 RLVLNEPAPLPCTPRG-IVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------- 193 (284)
T ss_pred HHhCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------
Confidence 124468997766 556667777 69999999999877788877777766 58888888431
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++.+++||+|++-. |.. --|+.+++ ++++++.-++-
T Consensus 194 --------T~~l~~~~k~ADIvV~Av----Gkp------------~~i~~~~i---k~GavVIDvGi 233 (284)
T PRK14193 194 --------TRDLAAHTRRADIIVAAA----GVA------------HLVTADMV---KPGAAVLDVGV 233 (284)
T ss_pred --------CCCHHHHHHhCCEEEEec----CCc------------CccCHHHc---CCCCEEEEccc
Confidence 457889999999999975 542 12777765 47788888775
|
|
| >PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.5 Score=42.75 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHhcCCeEEEeCCCC------------cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 19 GFSLLGGHAIYLGPDD------------IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~------------s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
=...+|.+++.+.+-+ +....|-|++|..++=++-..+++ +.......+.+.+.-++|.+.... -+
T Consensus 190 lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~~A~lniv~-~~~~~~~a~~Lee~~GiP~~~~~~p~G 268 (455)
T PRK14476 190 IIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELGRSAATIAI-GESMRKAAEALEARTGVPYLVFPSLTG 268 (455)
T ss_pred HHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhccCcEEEEe-cHHHHHHHHHHHHHhCCCeEecCCCcC
Confidence 4467899987764321 112357899998887777677765 433344567777788999887521 11
Q ss_pred CCh----hHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 86 NHP----CQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 86 ~HP----tQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
.+- -+.|++++- +.++ ...+.|+|+++.||. ..+.+++..+.-+|+++..+.-...
T Consensus 269 ~~~t~~~l~~l~~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~-~~~~~la~~L~elG~~v~~~~~~~~-- 345 (455)
T PRK14476 269 LEAVDRFIATLAQISGRPVPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEP-DLLLALGSFLAEMGAEIVAAVTTTK-- 345 (455)
T ss_pred hHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCH-HHHHHHHHHHHHCCCEEEEEEeCCC--
Confidence 222 233333331 1111 123679999999985 4677787777789998765442221
Q ss_pred CHHHHHHHHHhCCCeEEEEcC---HHHHhCCCCEEEEeccc
Q 024871 145 DKETVEKARKAGISKIEITND---PKEVVQGADVVYSDVWA 182 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d---~~~a~~~aDviy~~~w~ 182 (261)
.+..+.. ....+. ..| +++.+++.|+|+...|.
T Consensus 346 -~~~~~~~---~~~~i~-~~D~~~le~~~~~~dliig~s~~ 381 (455)
T PRK14476 346 -SPALEDL---PAEEVL-IGDLEDLEELAEGADLLITNSHG 381 (455)
T ss_pred -cHHHHhC---CcCcEE-eCCHHHHHHhccCCCEEEECchh
Confidence 1122221 212343 345 45667789999998753
|
|
| >PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1 Score=41.66 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=60.4
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCC--C-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGF--E-PDKETVEKARKAGISKIEITNDP-----KEVV--QGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~--~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDvi 176 (261)
+||+|+|...--..++-.+.. .+....++..|+.- . ....+.+.|+++|...+ ...++ .+.+ .+.|++
T Consensus 3 mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~-~~~~~~~~~~~~~l~~~~~Dli 81 (312)
T PRK06988 3 PRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVI-TPADPNDPELRAAVAAAAPDFI 81 (312)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEE-ccccCCCHHHHHHHHhcCCCEE
Confidence 689999985433444433332 23344444444221 1 12356678888886433 22222 2223 368888
Q ss_pred EEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 177 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 82 v~~~~-----------------~~iip~~il~~~~~g~iNiHpslLP~yRG~ 116 (312)
T PRK06988 82 FSFYY-----------------RHMIPVDLLALAPRGAYNMHGSLLPKYRGR 116 (312)
T ss_pred EEehh-----------------ccccCHHHHhcCCCCEEEeeCccccCCCCc
Confidence 87754 245788888888888999999 8988853
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.4 Score=37.77 Aligned_cols=67 Identities=28% Similarity=0.359 Sum_probs=38.6
Q ss_pred EEEEEcCCC-chHHHHHHHH---hcCC-cEEEEeCCCCCCCCHHHHH--------HHHHhC-CCeEEEEcCHHHHhCCCC
Q 024871 109 KVVYVGDGN-NIVHSWLLMA---SVIP-FHFVCACPKGFEPDKETVE--------KARKAG-ISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 109 ~i~~vGd~~-~v~~S~~~~~---~~~g-~~~~~~~P~~~~~~~~~~~--------~~~~~g-~~~i~~~~d~~~a~~~aD 174 (261)
||+++|.++ .....+...+ ..++ .++++.-. +++-++ ..++.| ..+++.+.|.++|+++||
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Di-----d~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gAD 75 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDI-----DEERLEIVERLARRMVEEAGADLKVEATTDRREALEGAD 75 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-S-----CHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcC-----CHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCC
Confidence 688888764 3444433332 2333 35555543 333322 122333 246788999999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|++.-
T Consensus 76 fVi~~i 81 (183)
T PF02056_consen 76 FVINQI 81 (183)
T ss_dssp EEEE--
T ss_pred EEEEEe
Confidence 999974
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN | Back alignment and domain information |
|---|
Probab=92.81 E-value=6.1 Score=37.66 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQI 91 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~ 91 (261)
+..=...+|.++..+ +..+.|++|.-+.-++-..+++.+.......+.+.+.-++|.+...--+-+. -+.
T Consensus 176 l~~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~t~~~l~~ 249 (410)
T cd01968 176 VKPLLEKLGIRVLAS------ITGDSRVDEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRDTSKSLRN 249 (410)
T ss_pred HHHHHHHcCCeEEEE------eCCCCCHHHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHHHHHHHHHH
Confidence 334455677777643 2335678888777677777766554445566777777889988642011122 233
Q ss_pred HHHHHH-----------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC
Q 024871 92 MADALT-----------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG 141 (261)
Q Consensus 92 L~Dl~T-----------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~ 141 (261)
|++++- +. +....+.|+++++.||...+ .+++..+.-+|++++.++-+.
T Consensus 250 ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~-~~la~~l~elGm~v~~~~~~~ 320 (410)
T cd01968 250 IAELLGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKS-WSLVSALQDLGMEVVATGTQK 320 (410)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchH-HHHHHHHHHCCCEEEEEeccc
Confidence 444331 11 11124789999999986654 778888888999988776433
|
NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.66 E-value=1.4 Score=41.70 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=61.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEE----cCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEIT----NDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~----~d~~~a~~~aDviy~~ 179 (261)
+.+.+++++|- +++.+..+..+..+|++++++.+. ++..+.+.. .| ..+... +++.++++++|+|++.
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~-----~~~~~~l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDIN-----IDRLRQLDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHHHHhcC-ceeEeccCCHHHHHHHHccCCEEEEc
Confidence 67789999996 689999999999999988777542 222333333 33 223221 3467889999999987
Q ss_pred c-ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 180 V-WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 180 ~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
. |.... .+--++++.++..+++.+|.
T Consensus 238 ~~~~g~~------------~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 238 VLIPGAK------------APKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred cccCCCC------------CCcCcCHHHHhcCCCCCEEE
Confidence 4 42210 12336777777777665544
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.4 Score=42.91 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcC-------Cc--EEEEeCCCCCCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCC
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVI-------PF--HFVCACPKGFEPDKETVEKARKA-G-ISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~-------g~--~~~~~~P~~~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aD 174 (261)
+-+||+++|..++|..+++..+..- |+ +++++--..-....+.+|..... . ...+.++.+..+.++|||
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 3489999998788888887766544 43 67766443333344444433322 0 134666667788999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+.+.
T Consensus 179 iVVitA 184 (444)
T PLN00112 179 WALLIG 184 (444)
T ss_pred EEEECC
Confidence 998864
|
|
| >cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.5 Score=42.06 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=84.5
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.+++.. +..|-|++|.-++=++-..+++.+.......+.+.+.-++|.+....-..+.| +.|+++
T Consensus 184 L~~~Gl~v~~~------~~~~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~~t~~~l~~la~~ 257 (415)
T cd01977 184 FERMGIQVLST------FTGNGTYDDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFEYCAESLRKIGAF 257 (415)
T ss_pred HHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHHHHHHHHHHHHHH
Confidence 44566666421 23467777766654445556555444445667777788999887532223333 334444
Q ss_pred HHHH--------H-----------HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LTII--------E-----------HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~Ti~--------e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+-+. + ....+.|+||++.||... +.++...+. -+|++++.++.. +...+++.+..++.
T Consensus 258 ~g~~~~~e~~i~~~~~~~r~~l~~~~~~l~Gk~vai~~~~~~-~~~la~~l~~elG~~v~~i~~~-~~~~~~~~~~~~~~ 335 (415)
T cd01977 258 FGIEDRAEAVIAEEMAKWKPELDWYKERLKGKKVCIWTGGPK-LWHWTKVIEDELGMQVVAMSSK-FGHQEDFEKVIARG 335 (415)
T ss_pred hCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCch-HHHHHHHHHHhcCCEEEEEEEE-eccHHHHHHHHHhc
Confidence 3221 1 113489999999988643 467776665 699998877542 22233333333333
Q ss_pred CCCeEEEEcCH---H--HHh--CCCCEEEEeccc
Q 024871 156 GISKIEITNDP---K--EVV--QGADVVYSDVWA 182 (261)
Q Consensus 156 g~~~i~~~~d~---~--~a~--~~aDviy~~~w~ 182 (261)
+...+.+ .|. + +.+ .+.|+|+...|.
T Consensus 336 ~~~~~~v-~d~~~~e~~~~~~~~~pdliig~s~~ 368 (415)
T cd01977 336 GEGTIYI-DDPNELEFFEILEMLKPDIILTGPRV 368 (415)
T ss_pred CCceEEE-eCCCHHHHHHHHHhcCCCEEEecCcc
Confidence 2122332 232 1 112 357888887643
|
This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub |
| >TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE | Back alignment and domain information |
|---|
Probab=92.44 E-value=5.2 Score=38.79 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hH
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQ 90 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ 90 (261)
....=...+|.++... +..+.|++|.-++-++-..+++.+.......+.+.+.-++|.++..--+... .+
T Consensus 214 el~~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~T~~~L~ 287 (456)
T TIGR01283 214 HVKPLLEKLGIRVLAT------ITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIEDTSKALR 287 (456)
T ss_pred HHHHHHHHcCCeEEEE------eCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHHHHHHHH
Confidence 3444466788887652 2346788888887777777766554445567788778899998842111222 23
Q ss_pred HHHHHHH-----------H----------H-HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 91 IMADALT-----------I----------I-EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 91 ~L~Dl~T-----------i----------~-e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.|++++- + . .....|+|+++++.++. ....|++..+.-+|++++.++
T Consensus 288 ~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~-~~~~~l~~~l~elGmevv~~~ 356 (456)
T TIGR01283 288 DIADLFGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGG-VKSWSLVSALQDLGMEVVATG 356 (456)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEe
Confidence 4444442 1 0 11134899999988775 456688888888999988764
|
This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein. |
| >TIGR01284 alt_nitrog_alph nitrogenase alpha chain | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.3 Score=43.14 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHH
Q 024871 19 GFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMAD 94 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~D 94 (261)
=...+|.+++.. +..+-|++|..++=++-..+++.+.......+.+.+.-++|.++...-+-..| +.|++
T Consensus 220 lL~~~Gl~v~~~------~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T~~~l~~ia~ 293 (457)
T TIGR01284 220 YFERMGIQVLST------FTGNGCYDELRWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYCAKNLRKIGE 293 (457)
T ss_pred HHHHcCCeEEEE------ECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHHHHHHHHHH
Confidence 345667766521 12345666666644444555544333444566777777899887532111111 22233
Q ss_pred HHHHH------------------H-HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 95 ALTII------------------E-HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 95 l~Ti~------------------e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
++-+. + ....|.|+|+++.|+.. -+.++...+. -+|++++.++... ...+++.+....
T Consensus 294 ~~g~~~~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~-~~~~l~~~l~~ElGmevv~~~~~~-~~~~~~~~~~~~ 371 (457)
T TIGR01284 294 FFGIEERAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGP-KLWHWPRPLEDELGMEVVAVSTKF-GHEDDYEKIIAR 371 (457)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHhCCCEEEEEEEEe-CCHHHHHHHHHh
Confidence 32111 1 12458999999998864 4467777666 4999988765422 112222222223
Q ss_pred hCCCeEEEEc-CH---HHHh--CCCCEEEEeccc
Q 024871 155 AGISKIEITN-DP---KEVV--QGADVVYSDVWA 182 (261)
Q Consensus 155 ~g~~~i~~~~-d~---~~a~--~~aDviy~~~w~ 182 (261)
.+...+.+.+ +. ++.+ .+.|+++...|.
T Consensus 372 ~~~~~~~i~d~~~~e~~~~i~~~~pDllig~~~~ 405 (457)
T TIGR01284 372 VREGTVIIDDPNELELEEIIEKYKPDIILTGIRE 405 (457)
T ss_pred cCCCeEEEeCCCHHHHHHHHHhcCCCEEEecCCc
Confidence 2212232221 22 2222 368999987653
|
This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.61 Score=45.50 Aligned_cols=72 Identities=22% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC-CCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG-FEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~-~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.|+|++|+++|- +...|..+.-+.-.|+++++.--++ ......-.+.|.+.|. . ..+++|+++.||+|+...
T Consensus 33 ~LkgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF---~-v~~~~Ea~~~ADvVviLl 105 (487)
T PRK05225 33 YLKGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF---K-VGTYEELIPQADLVINLT 105 (487)
T ss_pred HhCCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC---c-cCCHHHHHHhCCEEEEcC
Confidence 488999999996 6677766666777788888665443 2222223344555664 3 257999999999999874
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.2 Score=42.77 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=51.8
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
...+|.+.|.+|+++|- +.+....+..+...|. +++++.+.. +...+.+++.|. .+...+++.+++.++|+|+
T Consensus 174 ~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~----~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVI 247 (423)
T PRK00045 174 KQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL----ERAEELAEEFGG-EAIPLDELPEALAEADIVI 247 (423)
T ss_pred HHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH----HHHHHHHHHcCC-cEeeHHHHHHHhccCCEEE
Confidence 34557799999999996 6677777777767787 677665532 122234555553 3333467778899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 248 ~aT 250 (423)
T PRK00045 248 SST 250 (423)
T ss_pred ECC
Confidence 975
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.94 Score=40.06 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-CH-HHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-DP-KEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d~-~~a~~~aDviy~~~ 180 (261)
.++|++|++||. +.|+...+..+..+|.++++++|. +.+++.+.++ .| .+++.. +. ++-++++++|++-+
T Consensus 22 ~~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~-~~--~i~~~~r~~~~~dl~g~~LViaAT 93 (223)
T PRK05562 22 LSNKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKK-YG--NLKLIKGNYDKEFIKDKHLIVIAT 93 (223)
T ss_pred ECCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHh-CC--CEEEEeCCCChHHhCCCcEEEECC
Confidence 367999999996 789988888888999999999996 3455544433 33 244332 11 23478999999875
|
|
| >cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE | Back alignment and domain information |
|---|
Probab=91.84 E-value=7.9 Score=37.25 Aligned_cols=123 Identities=10% Similarity=-0.067 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCeEEEeCCCC------------cCCCCCCCHHHHHHHHhhhccEEEEee--CCcchHHHHhhhCCCcEEe
Q 024871 15 SFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAARVLCRYNDIIMARV--FGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~------------s~~~kgEs~~Dt~~~ls~~~D~iv~R~--~~~~~~~~~a~~~~vPVIN 80 (261)
-...=...+|.+++.+..-+ .-...|-|++|..+.-++-..+++-++ ......+.+.+.-++|.+.
T Consensus 172 ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~ 251 (429)
T cd03466 172 EIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYR 251 (429)
T ss_pred HHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhccCcEEEEEccCccchHHHHHHHHHHHCCCeee
Confidence 34455678899997754311 112358899999998777788877653 2334567777888999776
Q ss_pred CCC-CCCChh----HHHHHHHH------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 81 GLT-DYNHPC----QIMADALT------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 81 a~~-~~~HPt----Q~L~Dl~T------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
... -.-+.| +.|++++- +. +.+..+.|+|++++|| ...+.++...+.-+|++++.+.
T Consensus 252 ~~~P~G~~~t~~~l~~l~~~~g~~~~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~-~~~~~~l~~~L~elG~~~~~v~ 330 (429)
T cd03466 252 LPLPIGLRATDEFMSLLSKLTGKPIPEKYTRERGRLLDAMIDAHKYNFGRKAAIYGE-PDFVVAITRFVLENGMVPVLIA 330 (429)
T ss_pred cCCCcChHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcC-HHHHHHHHHHHHHCCCEEEEEE
Confidence 421 222333 22333320 10 1112368999999998 3466777777777899875554
|
NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein. |
| >COG4087 Soluble P-type ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.1 Score=36.76 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=53.6
Q ss_pred CCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCc
Q 024871 41 EETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNN 118 (261)
Q Consensus 41 Es~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~ 118 (261)
+++..|++-|-.++|+.++-...-+.+.++|+..++|+=+-.. ..||- +=.-+.+++++ .+.++++|||+.|
T Consensus 33 ~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~gi~~~rv~a-~a~~e----~K~~ii~eLkk-~~~k~vmVGnGaN 104 (152)
T COG4087 33 SEVSETIQELHDMVDIYIASGDRKGSLVQLAEFVGIPVERVFA-GADPE----MKAKIIRELKK-RYEKVVMVGNGAN 104 (152)
T ss_pred HhhHHHHHHHHHhheEEEecCCcchHHHHHHHHcCCceeeeec-ccCHH----HHHHHHHHhcC-CCcEEEEecCCcc
Confidence 6777888888888999999877788999999999999988422 24553 12223344443 6789999999866
|
|
| >PLN02285 methionyl-tRNA formyltransferase | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.3 Score=41.32 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhc-----CCcEEE--EeCCCC-----CC-CCHHHHHHHHHhCCCeEEEE--c----
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASV-----IPFHFV--CACPKG-----FE-PDKETVEKARKAGISKIEIT--N---- 164 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~-----~g~~~~--~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~--~---- 164 (261)
.-+.+||+|+|...--.+++-.+... .+.+++ +..|+. .. .+..+.+.|+++|+....+. .
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 34568999999754333333322221 244443 344432 11 12245677888886421111 1
Q ss_pred -CHHHHh--CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 165 -DPKEVV--QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 165 -d~~~a~--~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+..+.+ .+.|++++-.| .+.|.+++++..+..++-+|| ||.+||
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~~l~~~~~g~iNiHpSLLP~yRG 131 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAY-----------------GNILPQKFLDIPKLGTVNIHPSLLPLYRG 131 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHh-----------------hhhcCHHHHhhccCCEEEEecccccCCCC
Confidence 111223 25677777643 245788888888888999999 899885
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.62 Score=37.89 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=45.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHH--HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKAR--KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~--~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|-.++|..+++..+..-+ -+++++-.+.-......+|... ........+..+..+++++||+|+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 389999987899888877665544 4777765432111112222111 122234566668889999999999874
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.75 Score=38.20 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-CH-HHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-DP-KEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d~-~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. ++|+...+..+...|.++++++|+- .+++. +.+ .+++.. .+ ++-++++|+|+..+
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~---~~~l~----~l~--~i~~~~~~~~~~dl~~a~lViaaT 78 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEI---CKEMK----ELP--YITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCcc---CHHHH----hcc--CcEEEecccChhcCCCceEEEECC
Confidence 589999999995 8899888888888899999998752 23332 222 222222 22 33589999999864
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.7 Score=38.77 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHH---HHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 110 VVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVE---KARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 110 i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~---~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|+++|-++.+..+++..+...| .++++.-...-.+.....+ .+......+++.++|+++++++||+|+...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 5789986778888888776666 6777776544233222221 111111246777888899999999999853
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.76 Score=38.00 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=45.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+|= +++..-++.-+..-|.+++.. ...++-.+.+.+.| .+..++++|+++++|+|.+-.
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~-----d~~~~~~~~~~~~g---~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVY-----DRSPEKAEALAEAG---AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEE-----ESSHHHHHHHHHTT---EEEESSHHHHHHHBSEEEE-S
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEEee-----ccchhhhhhhHHhh---hhhhhhhhhHhhcccceEeec
Confidence 58999995 677777776666778887654 34445555555555 577899999999999999863
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.2 Score=40.97 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHh-CCCCEE
Q 024871 98 IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV-QGADVV 176 (261)
Q Consensus 98 i~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~-~~aDvi 176 (261)
++|...+-++++|+++| .+++..|++..+...|.+++.+.|.. . .+.+++.|. ...++.++++ .++|+|
T Consensus 27 ~~~~~~~~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~~d~~~----~--~~~a~~~gv---~~~~~~~e~~~~~aDvV 96 (304)
T PLN02256 27 LQEELEKSRKLKIGIVG-FGNFGQFLAKTFVKQGHTVLATSRSD----Y--SDIAAELGV---SFFRDPDDFCEEHPDVV 96 (304)
T ss_pred HhHhhccCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECcc----H--HHHHHHcCC---eeeCCHHHHhhCCCCEE
Confidence 45666667889999999 68899999999888898888777653 1 234555663 3467888876 479998
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.-.
T Consensus 97 ilav 100 (304)
T PLN02256 97 LLCT 100 (304)
T ss_pred EEec
Confidence 8853
|
|
| >cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia | Back alignment and domain information |
|---|
Probab=91.39 E-value=5.9 Score=37.13 Aligned_cols=156 Identities=16% Similarity=0.136 Sum_probs=85.3
Q ss_pred HHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhH----HH
Q 024871 17 ETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQ----IM 92 (261)
Q Consensus 17 e~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ----~L 92 (261)
..=.+.+|.++..+-+. |-|++|.-+.-++-..+++-+.......+.+.+.-++|.+...--+.+.|. .|
T Consensus 172 ~~ll~~~G~~v~~~~~~------~~s~~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t~~~l~~i 245 (399)
T cd00316 172 KRLLEEMGIRVNALFDG------GTTVEELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEATDAFLRKL 245 (399)
T ss_pred HHHHHHcCCcEEEEcCC------CCCHHHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHHHHHHHHH
Confidence 33456778887665332 678888888666666666655345556677777789998874311112221 12
Q ss_pred HHHHH-------------------HHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-CCCCCCCHHHHHHH
Q 024871 93 ADALT-------------------IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-PKGFEPDKETVEKA 152 (261)
Q Consensus 93 ~Dl~T-------------------i~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-P~~~~~~~~~~~~~ 152 (261)
++++- +.+....+.|++++++||. ....+++..+..+|+.+..+. +.......+-..+.
T Consensus 246 ~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~-~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~~~~~~ 324 (399)
T cd00316 246 AELFGIEKEVPEVIARERARLLDALADYHEYLGGKKVAIFGDG-DLLLALARFLLELGMEVVAAGTTFGHKADYERREEL 324 (399)
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC-cHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHh
Confidence 22221 0011123789999999985 455666677777999876554 32211111111112
Q ss_pred HHhCCCeEEEEcCHH---HHhC--CCCEEEEec
Q 024871 153 RKAGISKIEITNDPK---EVVQ--GADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~---~a~~--~aDviy~~~ 180 (261)
...+ ..+....|.+ +.++ +.|+++...
T Consensus 325 ~~~~-~~~~~~~d~~~~~~~~~~~~pdl~ig~~ 356 (399)
T cd00316 325 LGEG-TEVVDDGDLEELEELIRELKPDLIIGGS 356 (399)
T ss_pred cCCC-CEEEeCCCHHHHHHHHhhcCCCEEEECC
Confidence 2222 3444444543 3444 478888875
|
This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.35 E-value=2.2 Score=39.45 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCC-CeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGI-SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~-~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.||+++|- ++|..+++..+...|. ++++.--..-......+|....... .++.++.+..+.+++||+|+.+.
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 4689999996 8888888887777675 6777754333333333433222110 13444445567899999988864
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.1 Score=43.57 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=50.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC--HHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITND--PKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d--~~~a~~~aDviy~~~ 180 (261)
+++|++|.+||. ++|+--.+..+..+|.++++++|+ +.+++.+.+ +.| ++++... .++-++++++|+.-+
T Consensus 9 ~l~~~~vlvvGg-G~vA~rk~~~ll~~ga~v~visp~---~~~~~~~l~-~~~--~i~~~~~~~~~~dl~~~~lv~~at 80 (457)
T PRK10637 9 QLRDRDCLLVGG-GDVAERKARLLLDAGARLTVNALA---FIPQFTAWA-DAG--MLTLVEGPFDESLLDTCWLAIAAT 80 (457)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHH-hCC--CEEEEeCCCChHHhCCCEEEEECC
Confidence 589999999996 788888888888899999999985 445554332 333 3443322 245689999988864
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.2 Score=41.36 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=45.7
Q ss_pred CCCCcEEEEEcCCC-chHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGN-NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~-~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
-|+|+||++||-++ .-+|++-+ .=-|.++++.-.++ ....++|++.|. + .-+++||++.||||+...
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL--RDSGlnViiGlr~g----~~s~~kA~~dGf---~-V~~v~ea~k~ADvim~L~ 82 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL--RDSGLNVIIGLRKG----SSSWKKAKEDGF---K-VYTVEEAAKRADVVMILL 82 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh--hhcCCcEEEEecCC----chhHHHHHhcCC---E-eecHHHHhhcCCEEEEeC
Confidence 38899999999853 25555433 33477776654433 223567888874 3 347899999999999874
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.32 Score=39.14 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCCCCCCHHHHHHHHHhCCC--eEEEEcCHHHHhCCCCE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKGFEPDKETVEKARKAGIS--KIEITNDPKEVVQGADV 175 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~g~~--~i~~~~d~~~a~~~aDv 175 (261)
++.+++++|++++++|- +.++.+.+..+...|++ ++++.-. . +...+.+++.+.. .+.-.+++.+.++++|+
T Consensus 4 ~~~~~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt-~---~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 4 KKKFGDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRT-P---ERAEALAEEFGGVNIEAIPLEDLEEALQEADI 78 (135)
T ss_dssp CTHHSTGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESS-H---HHHHHHHHHHTGCSEEEEEGGGHCHHHHTESE
T ss_pred HHhcCCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECC-H---HHHHHHHHHcCccccceeeHHHHHHHHhhCCe
Confidence 35678999999999996 67888888888888875 7777632 1 2222233344322 23345677788999999
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCC--cEEeeCCCCCCCcccccccccCCCc
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPK--AYFMHCLPAERGVEVTEGVIEAPYS 238 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~--~~~mH~lP~~rg~Ev~~~v~~~~~s 238 (261)
|+..+ +.+ .+.++++.++...+. .++==..|+ .|+.+|-+-|..
T Consensus 79 vI~aT--~~~-------------~~~i~~~~~~~~~~~~~~v~Dla~Pr----~i~~~v~~~~~v 124 (135)
T PF01488_consen 79 VINAT--PSG-------------MPIITEEMLKKASKKLRLVIDLAVPR----DIDPEVAELPGV 124 (135)
T ss_dssp EEE-S--STT-------------STSSTHHHHTTTCHHCSEEEES-SS-----SB-TTCGGSTTE
T ss_pred EEEec--CCC-------------CcccCHHHHHHHHhhhhceeccccCC----CCChhhcccCCe
Confidence 99975 112 246888888766542 333234784 335555554543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.7 Score=41.69 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
.+.+|.+.|.+|+++|- +.+....+..+...| .+++++.... +...+.+++.|. ...-.+++.+++.++|+|+
T Consensus 172 ~~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~----~ra~~la~~~g~-~~i~~~~l~~~l~~aDvVi 245 (417)
T TIGR01035 172 ERIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTY----ERAEDLAKELGG-EAVKFEDLEEYLAEADIVI 245 (417)
T ss_pred HHHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHHcCC-eEeeHHHHHHHHhhCCEEE
Confidence 35667899999999996 777777777777778 5777775532 112234455553 2222357788999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 246 ~aT 248 (417)
T TIGR01035 246 SST 248 (417)
T ss_pred ECC
Confidence 975
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=4.9 Score=41.72 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=103.4
Q ss_pred CHHHHHHHHhhhc---cEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEE
Q 024871 42 ETRDAARVLCRYN---DIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYV 113 (261)
Q Consensus 42 s~~Dt~~~ls~~~---D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~v 113 (261)
.+.+.+..+.... -.|-+-+.+... ++++-+...+||+| ++-+..-.-+|+=++.-.+..| +++..||++.
T Consensus 113 d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~-DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~ 191 (752)
T PRK07232 113 DPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRERMDIPVFH-DDQHGTAIISAAALLNALELVGKKIEDVKIVVS 191 (752)
T ss_pred CHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHHhcCCCeec-cccchHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 5677666666543 356665554433 34444556799999 3333444556777777777666 5999999999
Q ss_pred cCC-CchHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 114 GDG-NNIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 114 Gd~-~~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|-+ .++.-.-++. ..|+ +++++--+|+- +.+.-..+++..+ ..+++|+++++||++-.+-
T Consensus 192 GaGaag~~~a~~l~--~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~------~~~l~~~i~~~~v~iG~s~- 262 (752)
T PRK07232 192 GAGAAAIACLNLLV--ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD------ARTLAEAIEGADVFLGLSA- 262 (752)
T ss_pred CccHHHHHHHHHHH--HcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCC------CCCHHHHHcCCCEEEEcCC-
Confidence 986 3343332222 2455 66666544432 2222222333321 2489999999999998741
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC-CCCCCCcccccc---------cccCCCcchHhHHhcc
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC-LPAERGVEVTEG---------VIEAPYSIVFPQAENR 247 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~-lP~~rg~Ev~~~---------v~~~~~s~~~~Qa~N~ 247 (261)
+=-+|+++++...++.||+-+ -| -.|++.+ ++.+-+|-+=.|..|-
T Consensus 263 ----------------~g~~~~~~v~~M~~~piifalsNP---~~E~~p~~a~~~~~~~i~atGrs~~pnQ~NN~ 318 (752)
T PRK07232 263 ----------------AGVLTPEMVKSMADNPIIFALANP---DPEITPEEAKAVRPDAIIATGRSDYPNQVNNV 318 (752)
T ss_pred ----------------CCCCCHHHHHHhccCCEEEecCCC---CccCCHHHHHHhcCCEEEEECCcCCCCcccce
Confidence 124677777776667777654 22 1354433 4444455555566653
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=90.64 E-value=6.8 Score=40.78 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=90.3
Q ss_pred CHHHHHHHHhhhc---cEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEE
Q 024871 42 ETRDAARVLCRYN---DIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYV 113 (261)
Q Consensus 42 s~~Dt~~~ls~~~---D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~v 113 (261)
...+.+..+.... -.|-+-+++... ++++-+...+||+| ++-+.--.-+|+=|+.-.+..| +++..||++.
T Consensus 121 d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~-DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~ 199 (763)
T PRK12862 121 DPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELRERMKIPVFH-DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVAS 199 (763)
T ss_pred CHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHhcCCCceEe-cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEE
Confidence 4455555555442 345555554432 33444445799999 3323334456777777777766 5999999999
Q ss_pred cCC-CchHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 114 GDG-NNIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 114 Gd~-~~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|-+ .++.-.-++. ..|+ +++++--+|+- +.+.-..++++.+ ..+++|+++++||++-.+
T Consensus 200 GaGaag~~~a~~l~--~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~------~~~l~e~~~~~~v~iG~s-- 269 (763)
T PRK12862 200 GAGAAALACLDLLV--SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTD------ARTLAEVIEGADVFLGLS-- 269 (763)
T ss_pred ChhHHHHHHHHHHH--HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcc------cCCHHHHHcCCCEEEEcC--
Confidence 975 2333222222 2455 66666544431 2233333444432 248999999999999875
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
+ +=-+|+++++...++.||+-+
T Consensus 270 --~-------------~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 270 --A-------------AGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred --C-------------CCCCCHHHHHHhccCCEEEeC
Confidence 1 123677888776677777764
|
|
| >TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1 | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.4 Score=39.11 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=50.6
Q ss_pred CCCcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhC----CCeEEEEcCHHHHhCCCCEEE
Q 024871 105 LEGTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAG----ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 105 l~~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g----~~~i~~~~d~~~a~~~aDviy 177 (261)
|...+|+.++. +.|+. +.+..+..||+ +++++.|... +.++....+ .| ....++++++++++++++.++
T Consensus 1 ~~~i~vvL~~~~~p~NiG-aiaR~~~~fG~~~l~lv~p~~~-~~~~a~~~a--~ga~~~l~~~~v~~~l~eal~~~~~vv 76 (233)
T TIGR00050 1 LENIRIVLVEPSHSGNIG-SIARAMKNMGLTELCLVNPKSH-LEEEAYALA--AGARDILDNAKVVDDLDEALDDCDLVV 76 (233)
T ss_pred CCCeEEEEECCCCCCCHH-HHHHHHHhCCCCEEEEeCCCcC-CCHHHHHHh--CChHHhhccCEEECCHHHHHhcCCEEE
Confidence 34578889884 46654 56778888997 8888988776 555544322 22 134467889999999999877
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.+.
T Consensus 77 ~tt 79 (233)
T TIGR00050 77 GTS 79 (233)
T ss_pred EEC
Confidence 654
|
This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.55 E-value=1.1 Score=40.89 Aligned_cols=141 Identities=19% Similarity=0.122 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch------HHHHhhhC---CCcEEeCC-
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD------ILDLAKFA---TVPVINGL- 82 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~------~~~~a~~~---~vPVINa~- 82 (261)
+=..+++..|......+-... ...|.+.+.+.-+..= .|.|++--+-..- ++.+...- +.--.|.+
T Consensus 50 ~K~k~~~~iGi~~~~~~l~~~--~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~ 127 (283)
T COG0190 50 SKKKAAEEIGIASELYDLPED--ITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGK 127 (283)
T ss_pred HHHHHHHHcCCeeEEEeCCCc--CCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcc
Confidence 345688899998776542211 1133344444444332 5788887653322 22222111 11124521
Q ss_pred ----CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 83 ----TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 83 ----~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
-...+||-..+ +++|.|+++ +++|+++++||-.+-|.+=+..++..-+.++++|.-
T Consensus 128 L~~~~~~~~PCTp~g-i~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs------------------ 188 (283)
T COG0190 128 LAQGEPGFLPCTPAG-IMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHS------------------ 188 (283)
T ss_pred hhcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcC------------------
Confidence 13467887765 567777776 699999999998777888887777778899988842
Q ss_pred CeEEEEcCHHHHhCCCCEEEEec
Q 024871 158 SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|+.+..++||+|++-.
T Consensus 189 ----~T~~l~~~~k~ADIvv~Av 207 (283)
T COG0190 189 ----RTKDLASITKNADIVVVAV 207 (283)
T ss_pred ----CCCCHHHHhhhCCEEEEec
Confidence 2467888899999998864
|
|
| >TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent | Back alignment and domain information |
|---|
Probab=90.34 E-value=4.3 Score=34.81 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
++|++..-.| .+.+.+++++..+..++=+|| ||.+||.
T Consensus 79 ~~D~iv~~~~-----------------~~il~~~~l~~~~~~~iNiHpslLP~yrG~ 118 (190)
T TIGR00639 79 EVDLVVLAGF-----------------MRILGPTFLSRFAGRILNIHPSLLPAFPGL 118 (190)
T ss_pred CCCEEEEeCc-----------------chhCCHHHHhhccCCEEEEeCCcccCCCCc
Confidence 5888888754 245778888877778999999 8998863
|
In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.8 Score=40.34 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=48.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--H----HHHHHHHhC------CCeEEEEcCHHHHhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--E----TVEKARKAG------ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~----~~~~~~~~g------~~~i~~~~d~~~a~~~aDv 175 (261)
+||++||- +-+..+|+..++..|.+|++.-|..-.... . .++.+.+.| .+.++.++++++++++||+
T Consensus 8 ~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999995 778999999888889998877663211100 0 011111121 1356778899999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+--.
T Consensus 87 ViEav 91 (321)
T PRK07066 87 IQESA 91 (321)
T ss_pred EEECC
Confidence 99864
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.4 Score=32.62 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=44.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC---cEEEEeCCCCCCCCHHHHHH-HHHhCCCeEEEEc-CHHHHhCCCCEEEEecc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP---FHFVCACPKGFEPDKETVEK-ARKAGISKIEITN-DPKEVVQGADVVYSDVW 181 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g---~~~~~~~P~~~~~~~~~~~~-~~~~g~~~i~~~~-d~~~a~~~aDviy~~~w 181 (261)
||+++|- +|+..+++..+..-| .++.+++. ..++..+. +++.+ +..+. +..++++++|+|.....
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~----r~~~~~~~~~~~~~---~~~~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSS----RSPEKAAELAKEYG---VQATADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEE----SSHHHHHHHHHHCT---TEEESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeecc----CcHHHHHHHHHhhc---cccccCChHHhhccCCEEEEEEC
Confidence 7899985 889999998887777 78886632 22333333 34454 23344 78999999999999764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.96 Score=36.44 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
..+||++||. +||...|..++..-|.++..+.-. ...-.+++.. .+ ... ..++++.++++|++....
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~sr----s~~sa~~a~~~~~--~~~-~~~~~~~~~~aDlv~iav---- 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGHEVVGVYSR----SPASAERAAAFIG--AGA-ILDLEEILRDADLVFIAV---- 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTSEEEEESSC----HH-HHHHHHC--T--T------TTGGGCC-SEEEE-S----
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeC----Ccccccccccccc--ccc-ccccccccccCCEEEEEe----
Confidence 3589999997 788888888888889887765422 2222233332 22 223 346788999999998864
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
.+. .-....+.+..+. ..+++.+|.||=.+.
T Consensus 77 pDd-aI~~va~~La~~~-------~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 77 PDD-AIAEVAEQLAQYG-------AWRPGQIVVHTSGAL 107 (127)
T ss_dssp -CC-HHHHHHHHHHCC---------S-TT-EEEES-SS-
T ss_pred chH-HHHHHHHHHHHhc-------cCCCCcEEEECCCCC
Confidence 221 1111112222221 135678999997763
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.9 Score=37.48 Aligned_cols=86 Identities=26% Similarity=0.466 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH----HHHhCCCeEE
Q 024871 86 NHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK----ARKAGISKIE 161 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~----~~~~g~~~i~ 161 (261)
--|--++.=..-|.++ |+|+|++|.++||.. .-|++.++...+.++++. .+++.+++. +++.|.. |+
T Consensus 25 ~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDD--LtSlA~al~~~~~~I~Vv-----DiDeRll~fI~~~a~~~gl~-i~ 95 (243)
T PF01861_consen 25 ATPETTLRRAALMAER-GDLEGKRILFLGDDD--LTSLALALTGLPKRITVV-----DIDERLLDFINRVAEEEGLP-IE 95 (243)
T ss_dssp B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT---HHHHHHHHT--SEEEEE------S-HHHHHHHHHHHHHHT---EE
T ss_pred ccHHHHHHHHHHHHhc-CcccCCEEEEEcCCc--HHHHHHHhhCCCCeEEEE-----EcCHHHHHHHHHHHHHcCCc-eE
Confidence 3455555555555554 789999999999854 346666666777777765 467777665 4455643 44
Q ss_pred -EEcCH-----HHHhCCCCEEEEec
Q 024871 162 -ITNDP-----KEVVQGADVVYSDV 180 (261)
Q Consensus 162 -~~~d~-----~~a~~~aDviy~~~ 180 (261)
...|+ ++.....|+++||+
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp EE---TTS---TTTSS-BSEEEE--
T ss_pred EEEecccccCCHHHhcCCCEEEeCC
Confidence 23443 45567889999996
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.81 E-value=14 Score=33.55 Aligned_cols=170 Identities=10% Similarity=-0.042 Sum_probs=90.5
Q ss_pred ChhhHHHHHHHHHhcCCeEEEeCCCCcCC-CCCCCHHHHHHHHhhh-ccEEEEeeCCcchHH-------HHhhhCCC--c
Q 024871 9 SMRTRVSFETGFSLLGGHAIYLGPDDIQM-GKREETRDAARVLCRY-NDIIMARVFGHQDIL-------DLAKFATV--P 77 (261)
Q Consensus 9 StRTR~SFe~A~~~LGg~~~~l~~~~s~~-~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~-------~~a~~~~v--P 77 (261)
.++.-.=+..++..+|....|..-..... -..|.+.+..+.+... ...+-+=.+--..+. +.|+..+. -
T Consensus 17 hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D~~~~~A~~iGAvNT 96 (284)
T PRK12549 17 ASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLDELSDDARALGAVNT 96 (284)
T ss_pred cccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCHHHHHhCCceE
Confidence 44555567788999999988763321000 0235677777666443 344444333222222 22222211 1
Q ss_pred EEeCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHh
Q 024871 78 VINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 78 VINa~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
|++-.+ -..|=|-...=+..+++....+++++++++|- +.++++.+..+...|+ +++++.... .-.+.+.+.+.+.
T Consensus 97 v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~-~ka~~la~~l~~~ 174 (284)
T PRK12549 97 VVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP-ARAAALADELNAR 174 (284)
T ss_pred EEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH-HHHHHHHHHHHhh
Confidence 344222 22343433333333444334688999999996 6688888888888887 677775421 1112222222221
Q ss_pred -CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 156 -GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 156 -g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+...+...++..+.++++|+|+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 175 FPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred CCCeEEEeccchHhhhCCCCEEEECC
Confidence 1112333345667889999998875
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.2 Score=40.20 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHhhhccEEEEeeCCcchHH------------------------HHhhhCCCcEEeCCC-C-CCChhHHHH
Q 024871 40 REETRDAARVLCRYNDIIMARVFGHQDIL------------------------DLAKFATVPVINGLT-D-YNHPCQIMA 93 (261)
Q Consensus 40 gEs~~Dt~~~ls~~~D~iv~R~~~~~~~~------------------------~~a~~~~vPVINa~~-~-~~HPtQ~L~ 93 (261)
.-+++|+..-+ .-+|++++|....-..+ .+|..-+|-|+|.-+ + ..----.+.
T Consensus 35 ~~~~eel~~~i-~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltig 113 (406)
T KOG0068|consen 35 NLSLEELIEKI-KDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIG 113 (406)
T ss_pred cCCHHHHHHHh-ccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHH
Confidence 44556665543 34799999986542222 223334567888632 2 221222233
Q ss_pred HHHHHHHHh------------------C-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 94 DALTIIEHV------------------G-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 94 Dl~Ti~e~~------------------g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
-++.|.++. | .+.|++++++|= +++..-.+..+..+|++++..-| +.|. +.++.
T Consensus 114 li~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~-GrIGseVA~r~k~~gm~vI~~dp--i~~~----~~~~a 186 (406)
T KOG0068|consen 114 LILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGL-GRIGSEVAVRAKAMGMHVIGYDP--ITPM----ALAEA 186 (406)
T ss_pred HHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeec-ccchHHHHHHHHhcCceEEeecC--CCch----HHHHh
Confidence 344443321 1 368899999994 67777777788889999887766 3333 23555
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
.| +++. +++|++..||+|-.-. +.....+ --++++.++.+|+.+.+..+
T Consensus 187 ~g---vq~v-sl~Eil~~ADFitlH~--PLtP~T~----------~lin~~tfA~mKkGVriIN~ 235 (406)
T KOG0068|consen 187 FG---VQLV-SLEEILPKADFITLHV--PLTPSTE----------KLLNDETFAKMKKGVRIINV 235 (406)
T ss_pred cc---ceee-eHHHHHhhcCEEEEcc--CCCcchh----------hccCHHHHHHhhCCcEEEEe
Confidence 66 3443 6899999999997743 1111111 22566666666666666653
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.57 E-value=2.7 Score=36.71 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=49.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. +.|+-=.+..+...|.++++++|.- .+++..+.++.+..-++-.-+. +-+.+++.|++.+
T Consensus 9 ~l~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt 80 (210)
T COG1648 9 DLEGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAAT 80 (210)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeC
Confidence 589999999996 6677778888889999999999965 5566555555442222212222 3355688888865
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=2.1 Score=39.73 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
++..||+++| .+++..+.+..++.-|. ++++.-...-....+.++.... .+ ..+++.+.|. +++++||+|+.+
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t 81 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT 81 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence 4568999999 57788888777766664 6666654332222333433322 12 1356655676 589999999985
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 82 a 82 (321)
T PTZ00082 82 A 82 (321)
T ss_pred C
Confidence 3
|
|
| >TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit | Back alignment and domain information |
|---|
Probab=89.49 E-value=14 Score=36.10 Aligned_cols=163 Identities=15% Similarity=0.053 Sum_probs=93.8
Q ss_pred HHHHhcCCeEEEe-CCC---------CcCC-CCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 18 TGFSLLGGHAIYL-GPD---------DIQM-GKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 18 ~A~~~LGg~~~~l-~~~---------~s~~-~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
.=...+|.++..+ +.+ -+.+ ..|-|++|..+.=++-..+++-+.......+.+.+.-++|-++... -.
T Consensus 189 ~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tleei~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~~~~~~piG 268 (461)
T TIGR02931 189 HLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIEDLTDTANAKGTIALNRYEGMKAADYLQKKFDVPAIIGPTPIG 268 (461)
T ss_pred HHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHHHHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCeeccCCCcc
Confidence 3456789998754 321 1111 2367899988877777777776655566677888888999887532 22
Q ss_pred CChh----HHHHHHHH------HH-H---------H-h-CCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe-CCCCC
Q 024871 86 NHPC----QIMADALT------II-E---------H-V-GRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA-CPKGF 142 (261)
Q Consensus 86 ~HPt----Q~L~Dl~T------i~-e---------~-~-g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~-~P~~~ 142 (261)
-+.| +.|++++- +. | . . ..+.|+|+++.||. ..+.++...+.-+|+.+..+ ++...
T Consensus 269 i~~T~~fl~~l~~~~g~~~~e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~-~~~~~l~~~l~elGm~~~~~~~~~~~ 347 (461)
T TIGR02931 269 IRNTDTFLQNLKKMTGKPIPESLVKERGIAIDAIADLTHMFLADKRVAIYGNP-DLVIGLAEFCLDLEMKPVLLLLGDDN 347 (461)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCH-HHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 3333 33333321 11 1 0 0 13789999999984 44666776666789877643 33211
Q ss_pred --CCCHHHHHHHHHh-C-CCeEEEEcCHH---HHhC----CCCEEEEecc
Q 024871 143 --EPDKETVEKARKA-G-ISKIEITNDPK---EVVQ----GADVVYSDVW 181 (261)
Q Consensus 143 --~~~~~~~~~~~~~-g-~~~i~~~~d~~---~a~~----~aDviy~~~w 181 (261)
..+.+.+++..+. + ...+....|+. +.++ +.|+++...|
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~Dliig~s~ 397 (461)
T TIGR02931 348 SGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELDLILGHSK 397 (461)
T ss_pred cccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCCEEEECcc
Confidence 1223344443322 1 13344444543 4455 5888888764
|
Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively. |
| >cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like | Back alignment and domain information |
|---|
Probab=89.38 E-value=9.2 Score=36.68 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCeEEEeC-CCC---cCC--------CCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeC
Q 024871 14 VSFETGFSLLGGHAIYLG-PDD---IQM--------GKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVING 81 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~-~~~---s~~--------~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa 81 (261)
.-...=...+|.++..+- .++ .++ ..|-|++|..+.=++-..+++-+.......+.+.+.-++|-+..
T Consensus 172 ~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~ 251 (428)
T cd01965 172 REIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGEYSGRKAAKALEEKFGVPYILF 251 (428)
T ss_pred HHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEEChhhhHHHHHHHHHHHCCCeeec
Confidence 334445668899987653 211 111 24789999888777777776555455667777888889998875
Q ss_pred CC-CCCCh----hHHHHHHHH------HH-----------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-
Q 024871 82 LT-DYNHP----CQIMADALT------II-----------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC- 138 (261)
Q Consensus 82 ~~-~~~HP----tQ~L~Dl~T------i~-----------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~- 138 (261)
.. -+-+. .+.|++++- +. +.+..++|+|+++.||.. .+.+++..+.-+|+++..+.
T Consensus 252 ~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~-~~~~l~~~L~e~G~~v~~v~~ 330 (428)
T cd01965 252 PTPIGLKATDEFLRALSKLSGKPIPEELERERGRLLDAMLDSHFYLGGKRVAIAGDPD-LLLGLSRFLLEMGAEPVAAVT 330 (428)
T ss_pred CCCcChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChH-HHHHHHHHHHHcCCcceEEEE
Confidence 32 11222 233334321 11 111247899999999854 56778877878888766433
Q ss_pred CCCCCCCHHHHHHHHH-hCC-CeEEEEcCH---HHHhCC--CCEEEEecc
Q 024871 139 PKGFEPDKETVEKARK-AGI-SKIEITNDP---KEVVQG--ADVVYSDVW 181 (261)
Q Consensus 139 P~~~~~~~~~~~~~~~-~g~-~~i~~~~d~---~~a~~~--aDviy~~~w 181 (261)
+.......+-++...+ .+. ..+....|. ++.+++ .|+|+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~~pdliig~~~ 380 (428)
T cd01965 331 GTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGNSH 380 (428)
T ss_pred cCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhccCCCEEEECch
Confidence 3222221221111111 121 234444454 345655 899998864
|
The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.7 Score=41.65 Aligned_cols=76 Identities=21% Similarity=0.417 Sum_probs=52.8
Q ss_pred HHHHhCCCCCcEEEEEcCC-----CchH----HHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 98 IIEHVGRLEGTKVVYVGDG-----NNIV----HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 98 i~e~~g~l~~~~i~~vGd~-----~~v~----~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.++++ ++|++|++.|=. .++. -.++..+...|.++...-|... +.++... ..+.+.+|+++
T Consensus 302 i~~~~~-l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-------~~~~~~~-~~~~~~~~~~~ 372 (414)
T COG1004 302 ILNHLG-LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-------ENAFRNF-PDVELESDAEE 372 (414)
T ss_pred HHHhcC-CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh-------HHHHhcC-CCceEeCCHHH
Confidence 345667 999999999931 2333 3356777788999987777442 2222222 35788999999
Q ss_pred HhCCCCEEEEec-cc
Q 024871 169 VVQGADVVYSDV-WA 182 (261)
Q Consensus 169 a~~~aDviy~~~-w~ 182 (261)
++++||+|...+ |.
T Consensus 373 ~~~~aDaivi~tew~ 387 (414)
T COG1004 373 ALKGADAIVINTEWD 387 (414)
T ss_pred HHhhCCEEEEeccHH
Confidence 999999988754 64
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=3.8 Score=39.51 Aligned_cols=104 Identities=9% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
.+.++++.|+|++++|- +.++...+..+...|. +++++.-. . +...+.+.+.+.......+++.+.+.++|+|+
T Consensus 173 ~~~~~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt-~---~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 173 KRQLDNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRT-I---EKAQKITSAFRNASAHYLSELPQLIKKADIII 247 (414)
T ss_pred HHHhcCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCC-H---HHHHHHHHHhcCCeEecHHHHHHHhccCCEEE
Confidence 45678899999999997 5566665555556674 67777543 1 12222344444123333467788999999999
Q ss_pred EecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
..+ +. ..|.|+.+.++ .+|-.+|==.+|++
T Consensus 248 ~aT----~a-----------~~~vi~~~~~~-~~~~~~iDLavPRd 277 (414)
T PRK13940 248 AAV----NV-----------LEYIVTCKYVG-DKPRVFIDISIPQA 277 (414)
T ss_pred ECc----CC-----------CCeeECHHHhC-CCCeEEEEeCCCCC
Confidence 975 22 13667766653 23434444567853
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=3.5 Score=33.59 Aligned_cols=78 Identities=24% Similarity=0.307 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCH----H
Q 024871 92 MADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDP----K 167 (261)
Q Consensus 92 L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~----~ 167 (261)
+++. |.++.+..++++++-||-+. ..+.+..++..|.+++.+ ..++..++.+++.+. .+. ..|+ .
T Consensus 4 i~~~--l~~~~~~~~~~kileIG~Gf--G~~vA~~L~~~G~~ViaI-----Di~~~aV~~a~~~~~-~~v-~dDlf~p~~ 72 (134)
T PRK04148 4 IAEF--IAENYEKGKNKKIVELGIGF--YFKVAKKLKESGFDVIVI-----DINEKAVEKAKKLGL-NAF-VDDLFNPNL 72 (134)
T ss_pred HHHH--HHHhcccccCCEEEEEEecC--CHHHHHHHHHCCCEEEEE-----ECCHHHHHHHHHhCC-eEE-ECcCCCCCH
Confidence 4444 55666666789999999763 333444555678887755 344556777887763 222 2332 4
Q ss_pred HHhCCCCEEEEec
Q 024871 168 EVVQGADVVYSDV 180 (261)
Q Consensus 168 ~a~~~aDviy~~~ 180 (261)
+.-++||+||.-+
T Consensus 73 ~~y~~a~liysir 85 (134)
T PRK04148 73 EIYKNAKLIYSIR 85 (134)
T ss_pred HHHhcCCEEEEeC
Confidence 5689999999987
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.8 Score=39.90 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHH-hcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMA-SVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
+.+...+.++|+++|- +..++..+..+ ...+ .++++.... ..-.+.+.+..++.| ..+...+++++++++||+|+
T Consensus 118 ~~La~~~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs-~~~a~~~a~~~~~~g-~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 118 SYLARKDASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRD-PAKAEALAAELRAQG-FDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred HHhCCCCCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCC-HHHHHHHHHHHHhcC-CceEEeCCHHHHHhcCCEEE
Confidence 3466678899999996 55555555432 2345 467666542 222223333333334 24667889999999999998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+.+
T Consensus 195 ~aT 197 (314)
T PRK06141 195 CAT 197 (314)
T ss_pred Eee
Confidence 865
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.18 E-value=3.3 Score=38.35 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=45.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE---cCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEIT---NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~---~d~~~a~~~aDviy~~~ 180 (261)
.||+++|..++|..+++..+..-+ -+++++-.+ ....+.+|........++.-+ +|+.++++|+|+|+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 489999976889999888776655 478777665 333333333222111245432 34678999999988764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain | Back alignment and domain information |
|---|
Probab=89.18 E-value=12 Score=36.27 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.++... +..|-|++|..++=++-..+++.+.......+.+.+.-++|.+....-.-+.| +.|+++
T Consensus 213 L~~~Gl~v~~~------~~~~~t~eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~~t~~~l~~la~~ 286 (443)
T TIGR01862 213 LEEMGIQVVAT------FTGDGTYDEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFFGFTYTAESLRAIAAF 286 (443)
T ss_pred HHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHHHHHHHHHHHH
Confidence 44556665431 12356677776655555565444433344566777778999888542122222 333333
Q ss_pred HHH--------HH-----------HhCCCCCcEEEEEcCCCchHHHHHH-HHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LTI--------IE-----------HVGRLEGTKVVYVGDGNNIVHSWLL-MASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~Ti--------~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~-~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+-+ .+ ....|.|+|+++.++..+. .+++. ++.-+|+++..+..+. .-.+++.+..+..
T Consensus 287 ~gi~~~~e~~i~~~~~~~~~~l~~~~~~l~gkrvai~~~~~~~-~~~~~~ll~elGm~v~~~~~~~-~~~~~~~~~l~~l 364 (443)
T TIGR01862 287 FGIEKRAEEVIAEEKAKWKPELDYYKERLQGKRVCLYIGGSRL-WHWIGSAEEDLGMEVVAVGYEF-AHEDDYEKTMKRM 364 (443)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCchhH-HHHHHHHHHHCCCEEEEecccc-ccHHHHHHHHHhC
Confidence 321 11 1134789999998775443 36766 7777999988775432 1122333333333
Q ss_pred CCCeEEEEcCH--HH---Hh--CCCCEEEEecc
Q 024871 156 GISKIEITNDP--KE---VV--QGADVVYSDVW 181 (261)
Q Consensus 156 g~~~i~~~~d~--~~---a~--~~aDviy~~~w 181 (261)
+...+. ..|. .+ .+ .+.|+|+...|
T Consensus 365 ~~~~~~-v~~~~~~e~~~~i~~~~pdllig~s~ 396 (443)
T TIGR01862 365 GEGTLL-IDDPNELEFEEILEKLKPDIIFSGIK 396 (443)
T ss_pred CCceEE-ecCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 322233 3332 22 22 25788888754
|
This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.9 Score=40.04 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
++..-+-.+++++|- ++.++..++++. ..+. ++.+..+.. +-.+.+.++.++.| ..+...+|.+++++++|||++
T Consensus 122 ~La~~~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~-~~~~~~~~~~~~~g-~~v~~~~~~~eav~~aDiVit 198 (325)
T TIGR02371 122 YLARKDSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP-STREKFALRASDYE-VPVRAATDPREAVEGCDILVT 198 (325)
T ss_pred HhCCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHhhC-CcEEEeCCHHHHhccCCEEEE
Confidence 344456689999997 455655544432 3443 555554422 11123333344455 357778999999999999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
-+
T Consensus 199 aT 200 (325)
T TIGR02371 199 TT 200 (325)
T ss_pred ec
Confidence 65
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=88.97 E-value=3.7 Score=41.67 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=59.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEE--EeCCCC---CCCCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFV--CACPKG---FEPDKETVEKARKAGISKIEITNDP-----KEVV--QGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~--~~~P~~---~~~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDv 175 (261)
.||+|+|...--+.++-.+. .-|.+++ +..|+. -.....+.+.|+++|+..++ ..++ .+.+ .+.|+
T Consensus 1 mkivf~g~~~~a~~~l~~L~-~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~-~~~~~~~~~~~~l~~~~~D~ 78 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALL-AAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYA-PEDVNHPLWVERIRELAPDV 78 (660)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEe-eCCCCcHHHHHHHHhcCCCE
Confidence 48999996433333333232 2355544 333543 11122466778888864333 2332 1223 36788
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+++-.| .+.|.+++++..+-.++-+|| ||.+||.
T Consensus 79 iv~~~~-----------------~~ii~~~il~~~~~g~iN~H~slLP~yRG~ 114 (660)
T PRK08125 79 IFSFYY-----------------RNLLSDEILQLAPAGAFNLHGSLLPKYRGR 114 (660)
T ss_pred EEEccc-----------------cccCCHHHHhhcCCCEEEEeCCcccCCCCc
Confidence 887654 245888899888888999999 8998853
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.8 Score=38.92 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=45.0
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+..-+.++++++|-+ ..+...+.++. ..++ ++.+..... .-.+.+.++.++ .| ..+...+|++++++++|+|++
T Consensus 127 la~~~~~~v~IiGaG-~~a~~~~~al~~~~~~~~V~v~~R~~-~~a~~l~~~~~~~~g-~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 127 LAREDASRAAVIGAG-EQARLQLEALTLVRPIREVRVWARDA-AKAEAYAADLRAELG-IPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred hCCCCCCEEEEECCC-HHHHHHHHHHHhcCCCCEEEEEcCCH-HHHHHHHHHHhhccC-ceEEEeCCHHHHHccCCEEEE
Confidence 344556899999974 33555444443 3454 566665421 111222222222 24 356678999999999999998
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.+
T Consensus 204 aT 205 (330)
T PRK08291 204 TT 205 (330)
T ss_pred ee
Confidence 76
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=88.58 E-value=6.1 Score=37.79 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEe-CCCC-CCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCA-CPKG-FEPDKETVEKARKA-G-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~-~P~~-~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~a 173 (261)
.+-+||+++|-.++|..+.+..+...++ .+++. .+.. -....+.+|..... . ...+.++.+..+.++|+
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kda 121 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDA 121 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCC
Confidence 4569999999868888888776654332 34444 2221 12223333332221 1 12466666778899999
Q ss_pred CEEEEec-ccCcchhHHHHH---HHhhhcCCcccHHHHHhcCCCcEEee
Q 024871 174 DVVYSDV-WASMGQKEEAAY---RKQAFQGFQVDEFLMKLAGPKAYFMH 218 (261)
Q Consensus 174 Dviy~~~-w~~~~~~~~~~~---~~~~~~~y~v~~~~~~~a~~~~~~mH 218 (261)
|+|+.+. -++...++|.+- ..+.+ -.+-+++.+.++++++++=
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~--k~i~~~I~~~a~~~~iviV 168 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIF--ADQGKALNAVASKNCKVLV 168 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHhCCCCeEEEE
Confidence 9988864 111111223211 11111 1244555555667886554
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=11 Score=36.92 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCCh----hHHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHP----CQIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HP----tQ~L~ 93 (261)
.=...+|.++... +..+.|++|.-++=++-..+++-........+.+.+.-++|.+...=-+-+. .+.|+
T Consensus 211 ~lL~~~Gl~v~~~------~~~~~s~eei~~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~T~~~l~~la 284 (475)
T PRK14478 211 PLLDRLGIRVVAC------ITGDARYDDVASAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIEDTSDSLRQIA 284 (475)
T ss_pred HHHHHcCCeEEEE------cCCCCCHHHHHhcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHHHHHHHHHHHH
Confidence 3445667766532 2345677777775555556655333334456677777899988632111222 34555
Q ss_pred HHH---H------------H-----------HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 94 DAL---T------------I-----------IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 94 Dl~---T------------i-----------~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
+++ - | .+....+.|+++++.||. ....+++..+.-+|+++..+.-....+. +
T Consensus 285 ~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~-~~~~~la~~l~ElGm~v~~~~~~~~~~~-~ 362 (475)
T PRK14478 285 RLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGG-VKSWSVVKALQELGMEVVGTSVKKSTDE-D 362 (475)
T ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCC-chHHHHHHHHHHCCCEEEEEEEECCCHH-H
Confidence 555 0 1 111224899999999885 4566888888889999876654332221 1
Q ss_pred HHHHHHH-hCCCeEEEEcC--HH---HHh--CCCCEEEEeccc
Q 024871 148 TVEKARK-AGISKIEITND--PK---EVV--QGADVVYSDVWA 182 (261)
Q Consensus 148 ~~~~~~~-~g~~~i~~~~d--~~---~a~--~~aDviy~~~w~ 182 (261)
.+..+. .+ ....+.+| .. +.+ .+.|++....|.
T Consensus 363 -~~~l~~~~~-~~~~v~~d~~~~e~~~~i~~~~pDliig~s~~ 403 (475)
T PRK14478 363 -KERIKELMG-PDAHMIDDANPRELYKMLKEAKADIMLSGGRS 403 (475)
T ss_pred -HHHHHHHcC-CCcEEEeCCCHHHHHHHHhhcCCCEEEecCch
Confidence 111222 12 12233344 23 334 357899887653
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.27 E-value=5.4 Score=36.88 Aligned_cols=70 Identities=17% Similarity=0.067 Sum_probs=44.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHh---CCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKA---GISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~---g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.||+++|- ++|..+++..+...| -+++++-...-......+|..... +..++..+.|.++ ++|||+|+.+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvit 78 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVT 78 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence 59999994 888888877766655 478777654322333333332222 1135555567664 9999999875
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.16 E-value=2.4 Score=38.65 Aligned_cols=67 Identities=28% Similarity=0.266 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+|+++| .+++..|++..+...|. ++++..+ .++..+.+++.|. ......+++++++++|+|+...
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr-----~~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvViiav 74 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADR-----SAETRARARELGL-GDRVTTSAAEAVKGADLVILCV 74 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEEC-----CHHHHHHHHhCCC-CceecCCHHHHhcCCCEEEECC
Confidence 36899999 58899999988877774 6666654 3444556666663 2345667888999999998864
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=88.16 E-value=3.9 Score=34.53 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEE-----cCHHHHhCCCCEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEIT-----NDPKEVVQGADVVY 177 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~-----~d~~~a~~~aDviy 177 (261)
++++++++++|..+.+....+..+...|.++++++... .--+.+.+...+ .+ ..+... +++.++++++|+|+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~-~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL-ERAQKAADSLRARFG-EGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHHHHHHhhcC-CcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 68999999999777888888877777788888876531 111122222221 22 223322 22347899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+..
T Consensus 103 ~at 105 (194)
T cd01078 103 AAG 105 (194)
T ss_pred ECC
Confidence 864
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.4 Score=42.62 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=42.8
Q ss_pred cEEEEEcCCCc----hHHHHHHHHhcC-CcEEEEeCCCC--CCCCHHHHH-HHHHhCC-CeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGNN----IVHSWLLMASVI-PFHFVCACPKG--FEPDKETVE-KARKAGI-SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~~----v~~S~~~~~~~~-g~~~~~~~P~~--~~~~~~~~~-~~~~~g~-~~i~~~~d~~~a~~~aDviy~ 178 (261)
.||+++|.++- ++.+++.....+ +-++.+.-.+. +..-..+.+ .+++.|. -+++.+.|.++|++|||+|++
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 58999998752 344444333223 35666554322 221111111 2233442 368889999999999999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.-
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred ee
Confidence 74
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=88.12 E-value=11 Score=39.32 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHhhhccEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCC
Q 024871 45 DAARVLCRYNDIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGN 117 (261)
Q Consensus 45 Dt~~~ls~~~D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~ 117 (261)
++++.+..-+-.|=+-+++... ++++-+..++||+| |..|=| =+|+=++.-.+..| +++..||++.|-+.
T Consensus 123 ~~v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~---DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGa 199 (764)
T PRK12861 123 DIIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFH---DDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGA 199 (764)
T ss_pred HHHHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeec---cccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhH
Confidence 4444444433335565555433 23333445799999 345555 45666766666665 59999999999762
Q ss_pred -chHHHHHHHHhcCCc---EEEEeCCCCCC-------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcch
Q 024871 118 -NIVHSWLLMASVIPF---HFVCACPKGFE-------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQ 186 (261)
Q Consensus 118 -~v~~S~~~~~~~~g~---~~~~~~P~~~~-------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~ 186 (261)
.+.-. .++...|. +++++--+|+- +.+....+++..+ ..++.|+++++||++-.+ +
T Consensus 200 Ag~~ia--~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~------~~~L~eai~~advliG~S----~- 266 (764)
T PRK12861 200 AALACL--DLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQETD------ARTLAEVIGGADVFLGLS----A- 266 (764)
T ss_pred HHHHHH--HHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcC------CCCHHHHHhcCCEEEEcC----C-
Confidence 33322 22223465 57666544421 2333334454432 248999999999998874 1
Q ss_pred hHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 187 KEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 187 ~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
+=-+|+++++...++.||+-.
T Consensus 267 ------------~g~ft~e~v~~Ma~~PIIFaL 287 (764)
T PRK12861 267 ------------GGVLKAEMLKAMAARPLILAL 287 (764)
T ss_pred ------------CCCCCHHHHHHhccCCEEEEC
Confidence 123677777776667777754
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.05 E-value=10 Score=34.02 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHH-HHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKA-RKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~-~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.||+|+| .+++..+++..+..-| .++++..+. +++..+.+ ++.| +..+++..++++++|+|+.-.
T Consensus 2 ~~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~~r~----~~~~~~~l~~~~g---~~~~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 2 SIQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVSNRS----NETRLQELHQKYG---VKGTHNKKELLTDANILFLAM 73 (279)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEECCC----CHHHHHHHHHhcC---ceEeCCHHHHHhcCCEEEEEe
Confidence 457999999 5888888887765544 455554331 12222322 3345 356788889999999988864
|
|
| >PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.3 Score=37.30 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=44.4
Q ss_pred hhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcC
Q 024871 51 CRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVI 130 (261)
Q Consensus 51 s~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~ 130 (261)
+.-+|+|+-|. +....+.++.++|||.---+ -.|++....... -.+.||++||-.+. ...+......+
T Consensus 32 ~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s-------~~Dil~al~~a~-~~~~~Iavv~~~~~-~~~~~~~~~ll 99 (176)
T PF06506_consen 32 SEGADVIISRG---GTAELLRKHVSIPVVEIPIS-------GFDILRALAKAK-KYGPKIAVVGYPNI-IPGLESIEELL 99 (176)
T ss_dssp TTT-SEEEEEH---HHHHHHHCC-SS-EEEE----------HHHHHHHHHHCC-CCTSEEEEEEESS--SCCHHHHHHHH
T ss_pred hcCCeEEEECC---HHHHHHHHhCCCCEEEECCC-------HhHHHHHHHHHH-hcCCcEEEEecccc-cHHHHHHHHHh
Confidence 34489999993 46677778889999995322 256666665544 45699999997433 23344444445
Q ss_pred CcEEEEe
Q 024871 131 PFHFVCA 137 (261)
Q Consensus 131 g~~~~~~ 137 (261)
|+++...
T Consensus 100 ~~~i~~~ 106 (176)
T PF06506_consen 100 GVDIKIY 106 (176)
T ss_dssp T-EEEEE
T ss_pred CCceEEE
Confidence 7666554
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.9 Score=36.69 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC-------------CCCCCC-HHHHHHHHHhCCCeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACP-------------KGFEPD-KETVEKARKAGISKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P-------------~~~~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~a 173 (261)
+||+++| .+.|.-.++..++.-|.+++.+-. +-+++. +++++...+. +++..+.|.+++++++
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~--~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSA--GRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHT--TSEEEESEHHHHHHH-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhcccccc--ccchhhhhhhhhhhcc
Confidence 4899998 478888888888888988876542 112222 2233322223 4789999999999999
Q ss_pred CEEEEe
Q 024871 174 DVVYSD 179 (261)
Q Consensus 174 Dviy~~ 179 (261)
|+++..
T Consensus 78 dv~~I~ 83 (185)
T PF03721_consen 78 DVVFIC 83 (185)
T ss_dssp SEEEE-
T ss_pred ceEEEe
Confidence 998874
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.88 E-value=6.4 Score=36.65 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=45.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCCC-CC-CCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPKG-FE-PDKETVEKARKA--GISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~~-~~-~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|..++|..+++..+..-|. ++++.--++ .. ...+.+|..... ....+.++.+..+.++|||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 47999999867788887766554442 677665432 11 333333432221 01234555677889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 88764
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain | Back alignment and domain information |
|---|
Probab=87.81 E-value=7 Score=38.10 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHHHH--------HHH------
Q 024871 39 KREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADALT--------IIE------ 100 (261)
Q Consensus 39 kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl~T--------i~e------ 100 (261)
.|-|++|..++=++-..+++.........+.+.+.-++|.++..--+-+.| +.|++++- |.+
T Consensus 236 g~~t~~ei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~Gi~~T~~~L~~la~~~g~~~~~e~~I~~e~~~~~ 315 (461)
T TIGR01860 236 GNGTYDDLRCMHRAQLNVVNCARSAGYIANELKKRYGIPRLDVDTWGFNYMAEALRKIGAFFGIEDKAEEVIAEEYAKYK 315 (461)
T ss_pred CCCCHHHHHhcccCcEEEEECchHHHHHHHHHHHHhCCCeecCCcCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 466777766655555555554333333556777778999888532223333 44445543 211
Q ss_pred -----HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEEEc--CHH--HH
Q 024871 101 -----HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKAG-ISKIEITN--DPK--EV 169 (261)
Q Consensus 101 -----~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~~~--d~~--~a 169 (261)
....|.|+|+++.|+... ..+++..+. -+|++++.++.. +.- ++.++...+.+ ...+.+.+ +.+ +.
T Consensus 316 ~~Ld~~~~~L~GkrvaI~~~~~~-~~~~~~~l~~ElGmevv~~~~~-~~~-~~~~~~~~~~~~~~~i~i~d~~~~e~~~~ 392 (461)
T TIGR01860 316 PKLDWYKERLQGKKMCIWTGGPR-LWHWTKALEDDLGMQVVAMSSK-FGH-QEDFEKVIARGKEGTIYIDDGNELEFFEV 392 (461)
T ss_pred HHHHHHHHHcCCCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeee-cCC-HHHHHHHHHhcCCCeEEEeCCCHHHHHHH
Confidence 113589999999987543 355666666 499998877643 222 33333333322 12233322 232 22
Q ss_pred hC--CCCEEEEecc
Q 024871 170 VQ--GADVVYSDVW 181 (261)
Q Consensus 170 ~~--~aDviy~~~w 181 (261)
++ ++|+++...|
T Consensus 393 ~~~~~pDliig~s~ 406 (461)
T TIGR01860 393 LDLIKPDVIFTGPR 406 (461)
T ss_pred HHhcCCCEEEeCCc
Confidence 33 6899998764
|
This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs. |
| >cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like | Back alignment and domain information |
|---|
Probab=87.73 E-value=24 Score=33.90 Aligned_cols=157 Identities=8% Similarity=0.037 Sum_probs=84.0
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC--CCCChhHH--
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT--DYNHPCQI-- 91 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~--~~~HPtQ~-- 91 (261)
...=...+|.++..+-+ .+-|++|..+.-++-..+++-+.......+.+.+.-++|.+.... -+-+.|..
T Consensus 178 lk~lL~~~Gl~v~~~~~------~~~~~~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~~~t~~~l 251 (427)
T cd01971 178 IKRVLEGIGLKVNILFG------PESNGEELRSIPKAQFNLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGAKATAEFL 251 (427)
T ss_pred HHHHHHHCCCeEEEEEC------CCCCHHHHHhcccCcEEEEEcHhhHHHHHHHHHHHhCCceEecCCCccCHHHHHHHH
Confidence 33345677877755421 245567776665555665554432445667777888999887531 22222222
Q ss_pred --HHHHHH---------HHHH----------h-----CCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEe-CCCCCC
Q 024871 92 --MADALT---------IIEH----------V-----GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCA-CPKGFE 143 (261)
Q Consensus 92 --L~Dl~T---------i~e~----------~-----g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~-~P~~~~ 143 (261)
|++++- +.+. + ....|+|++++||. -.+.++...+. -+|+.+..+ ++.+.
T Consensus 252 ~~i~~~~g~~~~~~~~~i~~e~~~~~~~l~~~~d~l~~~~~~k~vai~~~~-~~~~~l~~~L~~elGm~~~~~~~~~~~- 329 (427)
T cd01971 252 RQVAKFAGIEKAKVEAFIKAEEKRYYHYLERFSDFMARWGLPRRFAVIADS-TYALGLARFLVNELGWVPAKQVITDNP- 329 (427)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCh-HHHHHHHHHHHHhcCCceEEEEecCCC-
Confidence 222211 0010 1 12347999999984 36677777775 689977554 33322
Q ss_pred CCHHHHHH----HHHhC-CCeEEEEcCHHH---HhC------CCCEEEEecc
Q 024871 144 PDKETVEK----ARKAG-ISKIEITNDPKE---VVQ------GADVVYSDVW 181 (261)
Q Consensus 144 ~~~~~~~~----~~~~g-~~~i~~~~d~~~---a~~------~aDviy~~~w 181 (261)
+++..+. .++.+ ...+.+..|+.+ .++ +.|+|....|
T Consensus 330 -~~~~~~~~~~~~~~~~~~~~v~~~~D~~~~~~~i~~~~~~~~~dliig~s~ 380 (427)
T cd01971 330 -PEKYRSAIENEFEAEGVSAEVVFSEDGYAIGQSLRQSDFKYKPPIIFGSSW 380 (427)
T ss_pred -CHHHHHHHHHHHHhcCCCCcEEEecCHHHHHHHHHhCCCCCCCCEEEechH
Confidence 2222222 22222 134556666543 343 2889999864
|
This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.68 E-value=6 Score=39.26 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE----------------cC---
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT----------------ND--- 165 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~----------------~d--- 165 (261)
..+.|++++|. +.+..+.+..+..+|..++.+.. .++.++.+++.|...+.+. ++
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~-----~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~ 235 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDT-----RPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIA 235 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHH
Confidence 56679999995 77888888888899998776544 3344566666663222221 11
Q ss_pred -----HHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEE
Q 024871 166 -----PKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYF 216 (261)
Q Consensus 166 -----~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~ 216 (261)
..+.++++|+||++.-.. |. ..+.-+++++++..|+...|
T Consensus 236 ~~~~~~~e~~~~~DIVI~Talip-G~----------~aP~Lit~emv~~MKpGsvI 280 (511)
T TIGR00561 236 AEMELFAAQAKEVDIIITTALIP-GK----------PAPKLITEEMVDSMKAGSVI 280 (511)
T ss_pred HHHHHHHHHhCCCCEEEECcccC-CC----------CCCeeehHHHHhhCCCCCEE
Confidence 345678999999986211 21 12445788888887776554
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=87.53 E-value=2.7 Score=38.87 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHH-hcCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMA-SVIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDvi 176 (261)
+++..-+.++++++|- +..+++.+..+ ...++ ++.++.+. .+-.+++.+..++ .+ ..+...+|.+++++++|+|
T Consensus 120 ~~la~~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~-~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 120 KYLAREDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRT-FEKAYAFAQEIQSKFN-TEIYVVNSADEAIEEADII 196 (325)
T ss_pred HHhcCCCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCC-HHHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEE
Confidence 3455567799999996 44555554443 34565 45555442 2222233333332 34 3456688999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
++-+
T Consensus 197 i~aT 200 (325)
T PRK08618 197 VTVT 200 (325)
T ss_pred EEcc
Confidence 9976
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=87.30 E-value=2.8 Score=38.57 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
...+|++.|.+|+++|- +.+....+..+...| .+++++.+.. +...+.+++.|. .+...+++.++++++|+|+
T Consensus 170 ~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~----~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 170 EKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTY----ERAEELAKELGG-NAVPLDELLELLNEADVVI 243 (311)
T ss_pred HHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCH----HHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEE
Confidence 44567799999999996 666666666655555 4676665421 222344566663 3333356788899999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+..
T Consensus 244 ~at 246 (311)
T cd05213 244 SAT 246 (311)
T ss_pred ECC
Confidence 975
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=87.05 E-value=3.1 Score=38.52 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-E--cCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAGISKIEI-T--NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-~--~d~~~a~~~aDviy~~~ 180 (261)
||+++|..++|..+++..+..-+ -+++++-.+. ...+.+|........++.- + +|+.++++|||+|+.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvita 75 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPA 75 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeC
Confidence 68999976888888777665544 4777776544 2222233222111123442 1 24578999999988764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.78 E-value=6.3 Score=36.04 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=42.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH---hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~---~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++|- +++..+.+..+...|. +++++-...-.......+..+. .+ ....+..+..+.+++||+|+...
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~-~~~~i~~~~~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP-SPVKIKAGDYSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC-CCeEEEcCCHHHhCCCCEEEEcc
Confidence 48999995 7899998888777773 6777765332222211121111 12 22233334355799999999864
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.78 E-value=5.7 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCe-EEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISK-IEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~-i~~~~d~~~a~~~aDviy~~~ 180 (261)
++++++++++|- +++..+.+..+...| ..++++.+.. +...+.+++.+... .....+.+++++++|+|+...
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTL----EKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH----HHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 478999999996 688899888887775 5677665421 11222233333110 123457778899999999975
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.67 E-value=4 Score=37.92 Aligned_cols=73 Identities=18% Similarity=0.106 Sum_probs=42.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCCC--CCCCHHHHHHHHHh--CCCeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPKG--FEPDKETVEKARKA--GISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~~--~~~~~~~~~~~~~~--g~~~i~~~~d~~~a~~~aDvi 176 (261)
+||+++|..++|..+++..+..-|. ++++.-.++ -......+|..... ....+.++.+..+++++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 6899999878899988877654331 355554322 11111111211111 012245556778999999998
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.+.
T Consensus 81 VitA 84 (323)
T cd00704 81 ILVG 84 (323)
T ss_pred EEeC
Confidence 8763
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.7 Score=41.72 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHhCC--CCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeE--EEEcCHHHHhCCC
Q 024871 99 IEHVGR--LEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKI--EITNDPKEVVQGA 173 (261)
Q Consensus 99 ~e~~g~--l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i--~~~~d~~~a~~~a 173 (261)
.+.+|+ |++++|+++|- +.++...+..+...|. +++++.+.. +...+.+.+.+...+ ...+++.++++++
T Consensus 256 ~~~~~~~~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~----era~~La~~~~g~~i~~~~~~dl~~al~~a 330 (519)
T PLN00203 256 LMKLPESSHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSE----ERVAALREEFPDVEIIYKPLDEMLACAAEA 330 (519)
T ss_pred HHhcCCCCCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHhCCCceEeecHhhHHHHHhcC
Confidence 345664 99999999997 6677777766666786 677765432 111122333331222 2345778899999
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcC--------CCcEEeeCCCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG--------PKAYFMHCLPAE 223 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~--------~~~~~mH~lP~~ 223 (261)
|+|++.+ +. ..+.++.+.++.+. |-.+|==..|++
T Consensus 331 DVVIsAT----~s-----------~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 331 DVVFTST----SS-----------ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred CEEEEcc----CC-----------CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 9999864 21 13567777776542 223444557854
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.41 E-value=5.5 Score=37.02 Aligned_cols=74 Identities=19% Similarity=0.133 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCC-CCC-CCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPK-GFE-PDKETVEKARKA-G-ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~-~~~-~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|-.++|..|++..+..-+. ++++.-=+ ... .....+|..... . ...++++.+..+.++|||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 36999999768888888876654443 56555321 111 222222222111 0 0235566677889999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 82 vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEeC
Confidence 88864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=86.38 E-value=3.9 Score=36.21 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=44.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc----EEEEe-CCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF----HFVCA-CPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~----~~~~~-~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+| .+++..+++..+..-|. ++++. .+ .++..+.+.+.| +...++.+++++++|+|+.-.
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-----~~~~~~~~~~~g---~~~~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDS-----NPARRDVFQSLG---VKTAASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCC-----CHHHHHHHHHcC---CEEeCChHHHHhcCCEEEEEE
Confidence 3799999 58888888877666554 66654 32 233344455555 355778889999999998864
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.36 E-value=4.2 Score=36.74 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=47.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----------hC-----------CCeEEEEcC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----------AG-----------ISKIEITND 165 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----------~g-----------~~~i~~~~d 165 (261)
.||+++|- +.+..+++..++.-|.++++..+.. +.++.+++ .+ ...+..++|
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d 77 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISD-----EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTD 77 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCC
Confidence 58999995 7788888888888888888776542 22221111 00 135678899
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
++++++++|+|+.-.
T Consensus 78 ~~~a~~~aDlVieav 92 (287)
T PRK08293 78 LAEAVKDADLVIEAV 92 (287)
T ss_pred HHHHhcCCCEEEEec
Confidence 999999999999865
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=3.1 Score=37.52 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++|+++| .+++..+++..+...|.++++..+ .++..+.+.+.| +...++++++++++|+|+.-.
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~-----~~~~~~~~~~~g---~~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDR-----NPEAVAEVIAAG---AETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHCC---CeecCCHHHHHhcCCEEEEeC
Confidence 5899999 477888888877788888776544 333344455555 245678999999999999863
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.9 Score=41.83 Aligned_cols=73 Identities=29% Similarity=0.314 Sum_probs=42.3
Q ss_pred cEEEEEcCCCc----hHHHHHHHHhcCC-cEEEEeCCCC--CCCCHHHHH-HHHHhCC-CeEEEEcCHHHHhCCCCEEEE
Q 024871 108 TKVVYVGDGNN----IVHSWLLMASVIP-FHFVCACPKG--FEPDKETVE-KARKAGI-SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 108 ~~i~~vGd~~~----v~~S~~~~~~~~g-~~~~~~~P~~--~~~~~~~~~-~~~~~g~-~~i~~~~d~~~a~~~aDviy~ 178 (261)
.||+++|.++- +..+++.....++ -++++.-.+. +..-..+.+ ..++.|. -+++.+.|.++|+++||+|++
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 48999998752 3333333322343 5666654332 222111111 1223342 368889999999999999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.-
T Consensus 81 ~i 82 (437)
T cd05298 81 QI 82 (437)
T ss_pred Ee
Confidence 64
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=3.2 Score=40.17 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|..+.+..|++..+...|.++++..+.. +...+.+++.|. ..+.+.+++++++|+|+.-.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~----~~~~~~a~~~gv---~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP----KKGKEVAKELGV---EYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh----HHHHHHHHHcCC---eeccCHHHHhccCCEEEEec
Confidence 3799999768899999999988888887776431 122234555552 45678889999999988753
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.97 E-value=2.8 Score=42.85 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
.++++||++|| .+++..|++..+...|.+++...+.. . .+.+++.|. ....+++++++ ++|+|+.-.
T Consensus 366 ~~~~~kIgIIG-lG~mG~slA~~L~~~G~~V~~~dr~~-----~-~~~a~~~Gv---~~~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 366 DGSKLKIAIVG-FGNFGQFLAKTMVKQGHTVLAYSRSD-----Y-SDEAQKLGV---SYFSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCCEEEEEe-cCHHHHHHHHHHHHCcCEEEEEECCh-----H-HHHHHHcCC---eEeCCHHHHHhcCCCEEEECC
Confidence 37889999999 68999999999888898888776642 1 134555663 35678888775 599998864
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=85.95 E-value=3.6 Score=40.38 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--HHHHHHHH-h---------CCCeEEEEcCHHHHhCCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--ETVEKARK-A---------GISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~~~~~~~~-~---------g~~~i~~~~d~~~a~~~aDv 175 (261)
+||++||- +++..+|+..+..-|.++++..|..-.... +.++.+.+ . ..+.+..++|+++++++||+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 48999994 889999998888889888877653211100 00000000 0 00246788999999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.-.
T Consensus 84 Vieav 88 (495)
T PRK07531 84 IQESV 88 (495)
T ss_pred EEEcC
Confidence 99753
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.74 E-value=2.1 Score=39.02 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----hC-----------CCeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----AG-----------ISKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----~g-----------~~~i~~~~d~~~a~~ 171 (261)
+||+++|- +++..+++..+..-|.+++++.+.. +.++.+++ .| ...+..++|.+++++
T Consensus 5 ~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIGA-GTMGSGIAALFARKGLQVVLIDVME-----GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVS 78 (311)
T ss_pred cEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH-----HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhc
Confidence 58999995 7799999888888888888776532 22222221 11 023567888999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
++|+|+.-.
T Consensus 79 ~aDlVi~av 87 (311)
T PRK06130 79 GADLVIEAV 87 (311)
T ss_pred cCCEEEEec
Confidence 999999864
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.73 E-value=2.7 Score=38.39 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
.+|+++| .+.+..+++..++.-|.++++..+..-.... ..++.+.+.|. ..++.+.|+.++++
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3799999 6789999998888889888877654211100 00001112221 23578899999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
++|+|+.-.
T Consensus 82 ~ad~Vi~av 90 (308)
T PRK06129 82 DADYVQESA 90 (308)
T ss_pred CCCEEEECC
Confidence 999999875
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.65 E-value=4.4 Score=39.11 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=63.2
Q ss_pred HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 99 IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
++.||+|+++++.++|- +-+....+.-+..-|..-+.++=..+.-.+ +.+++.| +.+.-.+++.+.+.++|||++
T Consensus 170 ~~~~~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~---~La~~~~-~~~~~l~el~~~l~~~DvVis 244 (414)
T COG0373 170 KRIFGSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAE---ELAKKLG-AEAVALEELLEALAEADVVIS 244 (414)
T ss_pred HHHhcccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHH---HHHHHhC-CeeecHHHHHHhhhhCCEEEE
Confidence 45678899999999996 445555555555567544445556654333 3466777 455556788999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhc
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLA 210 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a 210 (261)
-+ +. ..|.|+.+.+..+
T Consensus 245 sT----sa-----------~~~ii~~~~ve~a 261 (414)
T COG0373 245 ST----SA-----------PHPIITREMVERA 261 (414)
T ss_pred ec----CC-----------CccccCHHHHHHH
Confidence 75 32 2478888888865
|
|
| >TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain | Back alignment and domain information |
|---|
Probab=85.58 E-value=20 Score=35.55 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=87.7
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChh----HHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPC----QIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPt----Q~L~Dl 95 (261)
...+|.+++.+- ..|-+++|..+.=++-+.+++.+.........+.+.-++|.++...-+-..| ..|+++
T Consensus 224 Le~~Gl~v~~~~------~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~Td~~Lr~la~~ 297 (513)
T TIGR01861 224 FQRMGIQVLSTF------TGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFEPLAASLRKVAMF 297 (513)
T ss_pred HHHCCCeEEEEe------CCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHHHHHHHHHHHHHH
Confidence 446777776431 2466778877776666777766544444566777788999887543233333 344444
Q ss_pred HH--------HHH-----------HhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 96 LT--------IIE-----------HVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 96 ~T--------i~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
+- |.+ ....|.|+|+++.||+. -+.|++..+. =+|++++.++-+. .-.++.-+..+..
T Consensus 298 ~g~~~~~e~~I~~e~~~~r~~Ld~~~~~L~GKrvai~~gg~-~~~~~~~~l~~ElGmevv~~~t~~-~~~~d~~~~~~~~ 375 (513)
T TIGR01861 298 FGIEDEAQAIIDEETARWKPELDWYKERLKGKKVCLWPGGS-KLWHWAHVIEEEMGLKVVSVYSKF-GHQGDMEKGVARC 375 (513)
T ss_pred hCCChhHhHhhHHHHHHHHHHHHHHHHhcCCCEEEEECCch-HHHHHHHHHHHhCCCEEEEEeccC-CCHHHHHHHHHhC
Confidence 43 211 12458999999998753 5666776666 4999988765432 1122222222333
Q ss_pred CCCeEEEE--cCHH--HHh--CCCCEEEEec
Q 024871 156 GISKIEIT--NDPK--EVV--QGADVVYSDV 180 (261)
Q Consensus 156 g~~~i~~~--~d~~--~a~--~~aDviy~~~ 180 (261)
+...+.+. .+++ +.+ .++|+++...
T Consensus 376 ~~~~~~i~D~~~~e~~~~l~~~~~Dllig~s 406 (513)
T TIGR01861 376 GEGALAIDDPNELEGLEAMEMLKPDIILTGK 406 (513)
T ss_pred CCCcEEecCCCHHHHHHHHHhcCCCEEEecC
Confidence 42223322 2233 223 3699999864
|
This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I. |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.50 E-value=4.9 Score=37.73 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=63.5
Q ss_pred HHhhhCCCcEEeCCCCCCC--hhHHHHHHHHHHHHh---------------------CCCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNH--PCQIMADALTIIEHV---------------------GRLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~H--PtQ~L~Dl~Ti~e~~---------------------g~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++.-+|.|=|..+...- ---++..++.+.+++ .+++|+||+++|- +++....+.
T Consensus 101 ~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~-G~IG~~ia~ 179 (336)
T KOG0069|consen 101 EAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGL-GRIGKAIAK 179 (336)
T ss_pred HHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecC-cHHHHHHHH
Confidence 4456677888886432222 222344455554433 1378999999994 788888888
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
-+..||..+.... -++++++ .+.+++ +. ..|.++-+.++|+|..-.
T Consensus 180 rL~~Fg~~i~y~~--r~~~~~~---~~~~~~-~~---~~d~~~~~~~sD~ivv~~ 225 (336)
T KOG0069|consen 180 RLKPFGCVILYHS--RTQLPPE---EAYEYY-AE---FVDIEELLANSDVIVVNC 225 (336)
T ss_pred hhhhccceeeeec--ccCCchh---hHHHhc-cc---ccCHHHHHhhCCEEEEec
Confidence 7777996555432 2333322 233444 22 568899999999999864
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.38 E-value=24 Score=34.11 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=59.8
Q ss_pred CCCcEEeCCCCCCChhHHHHHHHHHHH---HhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEe--------CCCC
Q 024871 74 ATVPVINGLTDYNHPCQIMADALTIIE---HVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCA--------CPKG 141 (261)
Q Consensus 74 ~~vPVINa~~~~~HPtQ~L~Dl~Ti~e---~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~--------~P~~ 141 (261)
++.|+-.+++..--+.-+.-=++.+++ ++| +++|++|++.| .+||....++.+...|.+++-+ .|+|
T Consensus 169 tGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~G 247 (410)
T PLN02477 169 TGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQG-FGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENG 247 (410)
T ss_pred eCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCC
Confidence 456765554432223334444555543 345 59999999999 5899999999988889988843 3677
Q ss_pred CCCCHHHHHHHHHhC-CC---eEEEEcCHHHHhCCCCEEEEec
Q 024871 142 FEPDKETVEKARKAG-IS---KIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 142 ~~~~~~~~~~~~~~g-~~---~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.++ ++++..++.| .. ..+..++-+-...+|||++.-.
T Consensus 248 LD~~-~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~A 289 (410)
T PLN02477 248 LDIP-ALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAA 289 (410)
T ss_pred CCHH-HHHHHHHhcCchhccccceEecCccceeccccEEeecc
Confidence 7543 3333323332 00 0111112111234788888754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.4 Score=37.25 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=46.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH--HH----HHHHHHhC----------CCeEEEEcCHHHHhCC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK--ET----VEKARKAG----------ISKIEITNDPKEVVQG 172 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~--~~----~~~~~~~g----------~~~i~~~~d~~~a~~~ 172 (261)
||+++|- +.+.++++..++..|.++++..+..-.... +. ++...+.| ...+.+++|++++. +
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6899996 889999999988999999988874322211 11 11111122 14688999999888 9
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+=-.
T Consensus 79 adlViEai 86 (180)
T PF02737_consen 79 ADLVIEAI 86 (180)
T ss_dssp ESEEEE-S
T ss_pred hheehhhc
Confidence 99988754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=85.17 E-value=18 Score=31.89 Aligned_cols=164 Identities=18% Similarity=0.177 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhcc-EEEEeeCC-cchHHHHhhhCCCc-EEeCCCCCC---C
Q 024871 14 VSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYND-IIMARVFG-HQDILDLAKFATVP-VINGLTDYN---H 87 (261)
Q Consensus 14 ~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D-~iv~R~~~-~~~~~~~a~~~~vP-VINa~~~~~---H 87 (261)
..++..+..-|-..+.++.+. .+. ++++.+++.+++..+ +-++--+. ...+..-+.+-=+| |+|+....+ +
T Consensus 15 ~~~~~~~~~~gtdai~vGGS~-~v~--~~~~~~~~~ik~~~~~~Pvilfp~~~~~i~~~aDa~l~~svlns~n~~~i~g~ 91 (219)
T cd02812 15 EEIAKLAEESGTDAIMVGGSD-GVS--STLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADAYLFPSVLNSGDPYWIIGA 91 (219)
T ss_pred HHHHHHHHhcCCCEEEECCcc-chh--hhHHHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEEeeecCCCchHHHHH
Confidence 446666666777888886653 122 688888888888775 54443332 22232223333355 888765433 2
Q ss_pred hhHHHHHHHHH---HHHh--CC---CCCcEEEEEcCCC-----chHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 88 PCQIMADALTI---IEHV--GR---LEGTKVVYVGDGN-----NIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 88 PtQ~L~Dl~Ti---~e~~--g~---l~~~~i~~vGd~~-----~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
--+++.-+-.+ .|-. |. =.|.+++++++.+ -.+-+.++++..+|++++..-=.+-..+.++++..++
T Consensus 92 ~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~ 171 (219)
T cd02812 92 QAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK 171 (219)
T ss_pred HHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH
Confidence 22233211110 1111 10 1356899999743 2677888899999999887763344567777777665
Q ss_pred h--C-----CCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 155 A--G-----ISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 155 ~--g-----~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
. + ++.|+-.++.+++++ +||.|...+
T Consensus 172 ~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 172 VLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred hcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3 2 123443455677888 899999975
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=3.5 Score=39.46 Aligned_cols=74 Identities=24% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
++++++++++|-+. +..+.+..+...|.+++++.+...+.-++..+.+.+.|. .+...+..++...++|+|+..
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGI-ELVLGEYPEEFLEGVDLVVVS 75 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCC-EEEeCCcchhHhhcCCEEEEC
Confidence 36899999999655 888899999999999998877542222222344445553 454444455667889977764
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=85.14 E-value=1.8 Score=39.99 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=58.0
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHH-HHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWL-LMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~-~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+..=+-.+++++|-+. .+...+ .++..+++ ++.+.++.. .-.+.+.+.+++.+ ..+...+|+++++++||||+|
T Consensus 122 ~La~~~~~~l~viGaG~-QA~~~~~a~~~~~~i~~v~v~~r~~-~~~~~~~~~~~~~~-~~v~~~~~~~~av~~aDii~t 198 (313)
T PF02423_consen 122 YLARPDARTLGVIGAGV-QARWHLRALAAVRPIKEVRVYSRSP-ERAEAFAARLRDLG-VPVVAVDSAEEAVRGADIIVT 198 (313)
T ss_dssp HHS-TT--EEEEE--SH-HHHHHHHHHHHHS--SEEEEE-SSH-HHHHHHHHHHHCCC-TCEEEESSHHHHHTTSSEEEE
T ss_pred HhCcCCCceEEEECCCH-HHHHHHHHHHHhCCceEEEEEccCh-hHHHHHHHhhcccc-ccceeccchhhhcccCCEEEE
Confidence 34433457999999753 333333 33445665 666666532 11233444444445 478889999999999999999
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCC-cccccccccCC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG-VEVTEGVIEAP 236 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg-~Ev~~~v~~~~ 236 (261)
-+-.. + ..|+ ++.+.+ ++++.|.+-+....+ .|++++++..-
T Consensus 199 aT~s~--~----------~~P~-~~~~~l---~~g~hi~~iGs~~~~~~El~~~~~~~a 241 (313)
T PF02423_consen 199 ATPST--T----------PAPV-FDAEWL---KPGTHINAIGSYTPGMRELDDELLKRA 241 (313)
T ss_dssp ----S--S----------EEES-B-GGGS----TT-EEEE-S-SSTTBESB-HHHHHCS
T ss_pred ccCCC--C----------CCcc-ccHHHc---CCCcEEEEecCCCCchhhcCHHHhccC
Confidence 65211 0 0022 444443 467777776653222 58888777653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK10433 putative RNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=4.7 Score=35.75 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=47.8
Q ss_pred CcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKA-G-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.+|++|.. +.|+. +.+.++..||+ +++++.|+.+ ++++....+... . ....++++++++|+++++.++.++
T Consensus 2 ~i~vVLv~p~~p~NiG-aiaRam~nfG~~~L~lV~p~~~-~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~~~vigtt 78 (228)
T PRK10433 2 RLTIILVAPARAENVG-AAARAMKTMGFSELRIVDSQAH-LEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATT 78 (228)
T ss_pred ceEEEEEcCCCCccHH-HHHHHHHHCCCCEEEEeCCCCC-CcHHHHHHhccHHHHhcCceEECCHHHHHHhCCeEEEEc
Confidence 367888885 45654 56677788997 8999999865 333322222211 0 234567899999999999877653
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=85.06 E-value=2.7 Score=37.95 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+++|- +++..+++..+...|.++++..+ .++..+.+.+.|. ....+++++++++|+|+.-.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~~~dr-----~~~~~~~~~~~g~---~~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLHVTTI-----GPEVADELLAAGA---VTAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHCCC---cccCCHHHHHhcCCEEEEec
Confidence 5899994 78899988888888988876643 3344455555552 34568889999999999863
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.03 E-value=4.5 Score=36.52 Aligned_cols=67 Identities=27% Similarity=0.327 Sum_probs=46.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----------hC----------CCeEEEEcCH
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----------AG----------ISKIEITNDP 166 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----------~g----------~~~i~~~~d~ 166 (261)
+||+++|- +.+..+++..++.-|.++++..+.. +.++.+.+ .| ...+..++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQ-----EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCH-----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcH
Confidence 47999995 7888888888888788888775432 22222211 11 0236678899
Q ss_pred HHHhCCCCEEEEec
Q 024871 167 KEVVQGADVVYSDV 180 (261)
Q Consensus 167 ~~a~~~aDviy~~~ 180 (261)
++++++||+|+.-.
T Consensus 76 ~~~~~~aD~Vi~av 89 (288)
T PRK09260 76 KAAVADADLVIEAV 89 (288)
T ss_pred HHhhcCCCEEEEec
Confidence 99999999999764
|
|
| >PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=84.95 E-value=5.3 Score=34.52 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 171 QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 171 ~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.++|+++.-.| .+.+.+++++..+..++=+|| ||.+||.
T Consensus 79 ~~~D~iv~~~~-----------------~~ii~~~~l~~~~~~~iNiHpslLP~yrG~ 119 (200)
T PRK05647 79 YQPDLVVLAGF-----------------MRILGPTFVSAYEGRIINIHPSLLPSFPGL 119 (200)
T ss_pred hCcCEEEhHHh-----------------hhhCCHHHHhhccCCEEEEeCccccCCCCc
Confidence 35787777543 245788888877778899999 8998864
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=5.5 Score=36.84 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHH--H-hCC-CeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKAR--K-AGI-SKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~--~-~g~-~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.+||+++|. +++..+.+..+...| .++++.-.+.-......++... . .+. .+++.+.|.+ ++++||+|+..
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence 45789999995 778888777766666 5777776543222222222211 1 121 2455456766 89999999886
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 81 a 81 (319)
T PTZ00117 81 A 81 (319)
T ss_pred C
Confidence 4
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=84.91 E-value=17 Score=31.86 Aligned_cols=86 Identities=23% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCc---EEEEeCCCCCC---C----CHHHHHHHHHhCCCeE
Q 024871 92 MADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPF---HFVCACPKGFE---P----DKETVEKARKAGISKI 160 (261)
Q Consensus 92 L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~---~~~~~~P~~~~---~----~~~~~~~~~~~g~~~i 160 (261)
|+=++.-.+..| ++++.|++++|- +......+..+...|+ +++++--.++- - .+...+.+++.+...
T Consensus 9 lAG~~~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~- 86 (226)
T cd05311 9 LAGLLNALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK- 86 (226)
T ss_pred HHHHHHHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-
Confidence 444555555666 599999999997 4444444444445576 47777665432 1 112223344443111
Q ss_pred EEEcCHHHHhCCCCEEEEec
Q 024871 161 EITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~ 180 (261)
...++.++++++|+|+..+
T Consensus 87 -~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 87 -TGGTLKEALKGADVFIGVS 105 (226)
T ss_pred -ccCCHHHHHhcCCEEEeCC
Confidence 1236778999999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=84.83 E-value=3.6 Score=37.80 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=64.3
Q ss_pred HHhCCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 100 EHVGRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 100 e~~g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
+++...+.++++++|- +..+...+.++. ..+. ++.+..+. ..-.+.+.++.+..+. .+. .++.+++++++|+|+
T Consensus 118 ~~La~~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~-~~~a~~~a~~~~~~~~-~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 118 RTLAPAPPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRT-AASAAAFCAHARALGP-TAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred HHhCCCCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCC-HHHHHHHHHHHHhcCC-eeE-ECCHHHHhhcCCEEE
Confidence 4567788899999997 445555544442 3564 56666543 1112223333333332 333 578999999999999
Q ss_pred EecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC-CcccccccccCC
Q 024871 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER-GVEVTEGVIEAP 236 (261)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r-g~Ev~~~v~~~~ 236 (261)
+.+-.+ + .-++.. .+|.+.+..-+.-.. -.|++++++..-
T Consensus 194 taT~s~----~-----------Pl~~~~----~~~g~hi~~iGs~~p~~~El~~~~~~~a 234 (304)
T PRK07340 194 TATTSR----T-----------PVYPEA----ARAGRLVVAVGAFTPDMAELAPRTVRGS 234 (304)
T ss_pred EccCCC----C-----------ceeCcc----CCCCCEEEecCCCCCCcccCCHHHHhhC
Confidence 975211 0 112221 246666666653222 257777777754
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.4 Score=37.20 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=45.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||++|| .+++.-|++..+...|.+++.+.+ .++..+.+++.|.. ...+++. ++++++|+|+.-.
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~-----~~~~~~~a~~~g~~-~~~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSLGHTVYGVSR-----RESTCERAIERGLV-DEASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHCCCc-ccccCCH-hHhcCCCEEEEcC
Confidence 799999 578999999988888888776654 34555666666631 1233444 5789999998864
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=84.44 E-value=5 Score=37.15 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=46.1
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHH-HhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLM-ASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~-~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+..=+-++++++|-+ ..+.+.+++ +..++. ++.+..+.. +-.+.+.+++++.+ ..++..++.++++++||||.|.
T Consensus 123 La~~d~~~l~iiG~G-~qA~~~~~a~~~v~~i~~v~v~~r~~-~~a~~~~~~~~~~~-~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 123 LAPQHVSAIGIVGTG-IQARMQLMYLKNVTDCRQLWVWGRSE-TALEEYRQYAQALG-FAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred hcCCCCCEEEEECCc-HHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHhcC-CcEEEECCHHHHhcCCCEEEEe
Confidence 333356899999974 334443332 334454 555555431 11223334444445 3677789999999999999997
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 200 T 200 (315)
T PRK06823 200 T 200 (315)
T ss_pred c
Confidence 5
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=3.6 Score=37.80 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCCchHHHHHHH-HhcCCc-EEEEeCCCCCCCCHHHHHHHHHh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLM-ASVIPF-HFVCACPKGFEPDKETVEKARKA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~-~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+-.+++++|-+ .-+.+.+.+ +..+++ ++.+..+.. .-.+.+.+..++. | ..++..+++++++++||||.|-+
T Consensus 116 da~~l~iiGaG-~QA~~~~~a~~~v~~i~~v~v~~r~~-~~a~~f~~~~~~~~~-~~v~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 116 NVENFTIIGSG-FQAETQLEGMASVYNPKRIRVYSRNF-DHARAFAERFSKEFG-VDIRPVDNAEAALRDADTITSIT 190 (301)
T ss_pred CCcEEEEECCc-HHHHHHHHHHHhcCCCCEEEEECCCH-HHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEEEEec
Confidence 46899999974 333333333 234565 555555432 1112233333333 4 36888899999999999999965
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.01 E-value=3.1 Score=38.99 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=45.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++|++|| .+++..|++..+...|.++.+..+. +.......+...|. .-..+++++++++++|+|+.-.
T Consensus 1 ~~I~iIG-~GliG~siA~~L~~~G~~v~i~~~~---~~~~~~~~a~~~~~-~~~~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVG-LGLIGGSLALAIKAAGPDVFIIGYD---PSAAQLARALGFGV-IDELAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEE-eCHHHHHHHHHHHhcCCCeEEEEeC---CCHHHHHHHhcCCC-CcccccCHHHHhcCCCEEEEeC
Confidence 4799998 4889999999998888766655432 22222222222332 1123567889999999998864
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=83.99 E-value=4.9 Score=37.81 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=45.6
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHH-HHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLL-MASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~-~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+..-+-.+++++|-+ ..+.+.++ .+..+++ ++++..+. .+-.+.+.+.+++.| ..+...+|+++++++||||.|-
T Consensus 124 Lar~da~~l~iiGaG-~QA~~~l~a~~~vr~i~~V~v~~r~-~~~a~~~~~~~~~~~-~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 124 LARPDSRTMALIGNG-AQSEFQALAFKALLGIEEIRLYDID-PAATAKLARNLAGPG-LRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred hccCCCcEEEEECCc-HHHHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHHHHhcC-CcEEEeCCHHHHHhcCCEEEEe
Confidence 333345889999974 34444433 2334565 45555432 111223333444444 3577789999999999999996
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 201 T 201 (346)
T PRK07589 201 T 201 (346)
T ss_pred c
Confidence 5
|
|
| >COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.71 E-value=7.6 Score=36.01 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=59.3
Q ss_pred cEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCC-----CCC-CHHHHHHHHHhCCCeEEEEcC-----HHHHhC--CC
Q 024871 108 TKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKG-----FEP-DKETVEKARKAGISKIEITND-----PKEVVQ--GA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~-----~~~-~~~~~~~~~~~g~~~i~~~~d-----~~~a~~--~a 173 (261)
+||+|+|-..--+.++-.++. .+..--++..|+. ..+ ...+...|.++|+. +..-++ ..+.++ ++
T Consensus 2 mkivF~GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip-v~qP~~l~~~e~~~~l~~l~~ 80 (307)
T COG0223 2 MRIVFFGTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP-VFQPEKLNDPEFLEELAALDP 80 (307)
T ss_pred cEEEEEcCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc-eeccccCCcHHHHHHHhccCC
Confidence 689999976555555543333 2443333444532 111 23455567777742 221111 223333 57
Q ss_pred CEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 174 Dviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
|++++-.| |+ .+.+++++..+-.++=+|+ ||++||
T Consensus 81 D~ivvvay---G~--------------ilp~~iL~~~~~G~iNvH~SLLPr~RG 117 (307)
T COG0223 81 DLIVVVAY---GQ--------------ILPKEILDLPPYGCINLHPSLLPRYRG 117 (307)
T ss_pred CEEEEEeh---hh--------------hCCHHHHhcCcCCeEEecCccCccccC
Confidence 88888642 32 3788999988888999999 899985
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.71 E-value=5.4 Score=35.81 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC------HHHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD------KETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~------~~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
.||++||- +.+..+++..++..|.++++..+..-... ++.++.+.+.|. ..+..+.|.+ .++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 57999995 88999998888888988887754321110 001122223331 2466777875 589
Q ss_pred CCCEEEEecccC
Q 024871 172 GADVVYSDVWAS 183 (261)
Q Consensus 172 ~aDviy~~~w~~ 183 (261)
+||+|+-...++
T Consensus 82 ~aDlVi~av~e~ 93 (282)
T PRK05808 82 DADLVIEAATEN 93 (282)
T ss_pred cCCeeeeccccc
Confidence 999999876433
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.71 E-value=3.3 Score=38.35 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=45.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...+|.|+| ++++....+.=+-+.|.++++.- ...+..+..++.| + ++.++|.|..+++|||+|-.
T Consensus 34 s~~~iGFIG-LG~MG~~M~~nLik~G~kVtV~d-----r~~~k~~~f~~~G-a--~v~~sPaeVae~sDvvitmv 99 (327)
T KOG0409|consen 34 SKTRIGFIG-LGNMGSAMVSNLIKAGYKVTVYD-----RTKDKCKEFQEAG-A--RVANSPAEVAEDSDVVITMV 99 (327)
T ss_pred ccceeeEEe-eccchHHHHHHHHHcCCEEEEEe-----CcHHHHHHHHHhc-h--hhhCCHHHHHhhcCEEEEEc
Confidence 468999999 45555555544556687776542 3333344455666 3 56789999999999999964
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=9.4 Score=35.57 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC-------cEEEEeCCC-CC-CCCHHHHHHHHHh-C-CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP-------FHFVCACPK-GF-EPDKETVEKARKA-G-ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g-------~~~~~~~P~-~~-~~~~~~~~~~~~~-g-~~~i~~~~d~~~a~~~aDv 175 (261)
-+||+++|-.++|..+.+..+...+ .++++.--+ .. ......+|..... . ..++.++.+..+.++|||+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 4799999976888887766554322 256655421 11 1222222222211 0 1234566677899999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.+.
T Consensus 84 VVita 88 (326)
T PRK05442 84 ALLVG 88 (326)
T ss_pred EEEeC
Confidence 88753
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.30 E-value=14 Score=34.85 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=43.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHh---CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKA---GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~---g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- ++|..+++..+...+. +++++-...-......+|..... +...+..+.|.+ .++|||+|+.+.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECC
Confidence 69999995 8888888776665553 67777654322333333332221 212333334544 599999998873
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=83.22 E-value=6.7 Score=35.45 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=45.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH------HHHHHHHHhCC----------CeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK------ETVEKARKAGI----------SKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~------~~~~~~~~~g~----------~~i~~~~d~~~a~~ 171 (261)
+||++||- +++..+++..+...|.++++..+..-.... ..++.+.+.|. +.+..+++. ++++
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 68999995 889999998888889888877653211110 00011212221 134556665 5789
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|+.-.
T Consensus 83 ~aD~Vieav 91 (295)
T PLN02545 83 DADFIIEAI 91 (295)
T ss_pred CCCEEEEcC
Confidence 999999875
|
|
| >cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE | Back alignment and domain information |
|---|
Probab=83.21 E-value=17 Score=34.92 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=86.5
Q ss_pred HHHhcCCeEEEeCCCCc------------CCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CC
Q 024871 19 GFSLLGGHAIYLGPDDI------------QMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DY 85 (261)
Q Consensus 19 A~~~LGg~~~~l~~~~s------------~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~ 85 (261)
=...+|.+++.+.+-+. ....|-+++|..+.=++-+.+++ ........+.+.+.-++|.+.... -.
T Consensus 179 lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~leei~~~~~A~lniv~-~~~~~~~a~~Lee~~GiP~~~~~~p~G 257 (417)
T cd01966 179 IIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLEDIRQMGRSAATLAI-GESMRKAAEALEERTGVPYYVFPSLTG 257 (417)
T ss_pred HHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHHHHhhccCeEEEEE-CHHHHHHHHHHHHHHCCCeeecCCCcc
Confidence 34578999987643211 12357788888887666677765 323334566777778899877521 11
Q ss_pred CCh----hHHHHHHHH------HHHH-----------hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-CCCCC
Q 024871 86 NHP----CQIMADALT------IIEH-----------VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-PKGFE 143 (261)
Q Consensus 86 ~HP----tQ~L~Dl~T------i~e~-----------~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-P~~~~ 143 (261)
.+- -+.|++++- +.++ ...+.|+|+++.||. ..+.++...+.-+|+++..+. +.+
T Consensus 258 ~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~-~~~~~l~~~L~ElG~~~~~~~~~~~-- 334 (417)
T cd01966 258 LEAVDALIATLAKLSGRPVPEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEP-DLLAALSSFLAEMGAEIVAAVATTD-- 334 (417)
T ss_pred hHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCH-HHHHHHHHHHHHCCCEEEEEEECCC--
Confidence 111 122222221 1111 123679999999984 456777777778899875443 322
Q ss_pred CCHHHHHHHHHhCCCeEEEEcCH---HHHhCCCCEEEEecc
Q 024871 144 PDKETVEKARKAGISKIEITNDP---KEVVQGADVVYSDVW 181 (261)
Q Consensus 144 ~~~~~~~~~~~~g~~~i~~~~d~---~~a~~~aDviy~~~w 181 (261)
.++ .+.. ....+ +..|+ ++.+++.|+++...|
T Consensus 335 -~~~-~~~~---~~~~~-~~~D~~~~e~~~~~~dllig~s~ 369 (417)
T cd01966 335 -SPA-LEKL---PAEEV-VVGDLEDLEDLAAEADLLVTNSH 369 (417)
T ss_pred -CHH-HHhC---cccce-EeCCHHHHHHhcccCCEEEEcch
Confidence 111 1111 11122 23454 456777999998865
|
NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.18 E-value=7.4 Score=33.85 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC---cE-EEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP---FH-FVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g---~~-~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++.||+++|- +++.++++..+..-| .+ ++...+. .++..+.+. +.| +..+.|.+++++++|+|+...
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRS----NVEKLDQLQARYN---VSTTTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCC----CHHHHHHHHHHcC---cEEeCChHHHHhcCCEEEEec
Confidence 4679999994 788888877654443 33 5445432 122233333 344 345678899999999998875
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.16 E-value=27 Score=29.96 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=45.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHh-CCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVV-QGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~-~~aDviy~~~ 180 (261)
+++|++|+++|= +++...++..+...|.+++++... ++-++.+. ..|. +..+. ++.. .++|++..-.
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~-----~~~~~~~~~~~g~---~~v~~-~~l~~~~~Dv~vp~A 93 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN-----EEAVARAAELFGA---TVVAP-EEIYSVDADVFAPCA 93 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHHcCC---EEEcc-hhhccccCCEEEecc
Confidence 589999999996 589999999999999999865432 33333333 3352 22323 4444 3899998653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor | Back alignment and domain information |
|---|
Probab=83.11 E-value=41 Score=31.53 Aligned_cols=129 Identities=12% Similarity=0.208 Sum_probs=78.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeE------EEeCCCCcCCCCCCCHHHHHHHHhh-hcc-EEEEeeCCc----chHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHA------IYLGPDDIQMGKREETRDAARVLCR-YND-IIMARVFGH----QDIL 68 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~------~~l~~~~s~~~kgEs~~Dt~~~ls~-~~D-~iv~R~~~~----~~~~ 68 (261)
++.||.+.+-+-+.+|+-|+.+..-.. ..+.+..-.+....|.. +.+.++. +.+ +..+=.+.. .++.
T Consensus 2 iG~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~-~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~ 80 (371)
T cd06388 2 IGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFA-VTNAFCSQYSRGVFAIFGLYDKRSVHTLT 80 (371)
T ss_pred CceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhH-HHHHHHHHHhCCceEEEecCCHHHHHHHH
Confidence 578999888888899999999987543 23333333344455544 3344444 343 444433332 2456
Q ss_pred HHhhhCCCcEEeCCCC---------CCChhH--HHHHHHHHHHHhCCCCCcEEEEEcCCC---chHHHHHHHHhcCCcEE
Q 024871 69 DLAKFATVPVINGLTD---------YNHPCQ--IMADALTIIEHVGRLEGTKVVYVGDGN---NIVHSWLLMASVIPFHF 134 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~---------~~HPtQ--~L~Dl~Ti~e~~g~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~~~ 134 (261)
.+++..+||.|-...+ ..||.+ +++| +.++ ++.+|++++-|.+ ..+..+...+...|.++
T Consensus 81 ~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~---~i~~---~~wk~vaiiYd~~~~~~~lq~l~~~~~~~g~~v 154 (371)
T cd06388 81 SFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS---LLDH---YEWNRFVFLYDTDRGYSILQAIMEKAGQNGWQV 154 (371)
T ss_pred HHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH---HHHh---cCceEEEEEecCCccHHHHHHHHHhhHhcCCee
Confidence 7788899999964211 125553 3444 3444 4588899888743 25666777777778776
Q ss_pred EE
Q 024871 135 VC 136 (261)
Q Consensus 135 ~~ 136 (261)
+.
T Consensus 155 ~~ 156 (371)
T cd06388 155 SA 156 (371)
T ss_pred ee
Confidence 54
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=83.08 E-value=6.7 Score=36.34 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHh-cCCc-EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMAS-VIPF-HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~-~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..-+.++++++|- +..+...+.++. ..++ ++++.... ..-.+.+.+.+++ .| ..+...+|++++++++|+|++-
T Consensus 125 a~~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~-~~~a~~~a~~~~~~~g-~~v~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 125 AREDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARD-SAKAEALALQLSSLLG-IDVTAATDPRAAMSGADIIVTT 201 (326)
T ss_pred CCCCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCC-HHHHHHHHHHHHhhcC-ceEEEeCCHHHHhccCCEEEEe
Confidence 3446689999997 444444444443 4575 56666542 1112233333322 24 3566678999999999999997
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 202 T 202 (326)
T TIGR02992 202 T 202 (326)
T ss_pred c
Confidence 5
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=4.8 Score=36.61 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=46.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.++++..+ .++..+.+.+.|. ....++.++++++|+|++-.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~-----~~~~~~~~~~~g~---~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDV-----NPQAVDALVDKGA---TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcC-----CHHHHHHHHHcCC---cccCCHHHHHhcCCEEEEec
Confidence 3799999 478888888888788888776644 3333444555552 35678899999999998753
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.9 Score=40.63 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCC-chHHHH---HHHHhcCCc-EEEEeCCCCCCCCHHHHH--------HHHHhCC-CeEEEEcCHHHHhC
Q 024871 106 EGTKVVYVGDGN-NIVHSW---LLMASVIPF-HFVCACPKGFEPDKETVE--------KARKAGI-SKIEITNDPKEVVQ 171 (261)
Q Consensus 106 ~~~~i~~vGd~~-~v~~S~---~~~~~~~g~-~~~~~~P~~~~~~~~~~~--------~~~~~g~-~~i~~~~d~~~a~~ 171 (261)
++.||+++|.++ .+.-.+ +.....++. ++.+. .++++-.+ ..++.|. .+++.+.|+++|++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~-----Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~ 76 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALY-----DIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALE 76 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEE-----eCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhc
Confidence 467999999874 343333 333333443 55443 23332222 2234453 35788999999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|++.-
T Consensus 77 gAdfVi~~~ 85 (442)
T COG1486 77 GADFVITQI 85 (442)
T ss_pred CCCEEEEEE
Confidence 999999964
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.23 E-value=7.4 Score=36.61 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=72.0
Q ss_pred HhhhccEEEEee-CCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHh
Q 024871 50 LCRYNDIIMARV-FGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMAS 128 (261)
Q Consensus 50 ls~~~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~ 128 (261)
-.+|++-+++.. +.-...+.+.-..-.|+..|+...++|. ++.+--.|.+|+++|=+ .+.|.-+..+.
T Consensus 119 ~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~al----------k~~~~~pG~~V~I~G~G-GlGh~avQ~Ak 187 (339)
T COG1064 119 DGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL----------KKANVKPGKWVAVVGAG-GLGHMAVQYAK 187 (339)
T ss_pred cCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeeh----------hhcCCCCCCEEEEECCc-HHHHHHHHHHH
Confidence 355777666652 1111112222222347777877778886 23233458999999975 89999999999
Q ss_pred cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE--cCHHHHhCC-CCEEEEec
Q 024871 129 VIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT--NDPKEVVQG-ADVVYSDV 180 (261)
Q Consensus 129 ~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~--~d~~~a~~~-aDviy~~~ 180 (261)
.+|++++.++- .++-++.+++.|...+.-+ .|.-+++++ +|+|+-+.
T Consensus 188 a~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 188 AMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred HcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 99999887753 3445567888884333222 233334433 99999885
|
|
| >cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family | Back alignment and domain information |
|---|
Probab=82.05 E-value=17 Score=34.87 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=81.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeC-----CCCcCCCCCCCHHHHHHHHhhhc-cEEEEeeCCcc----hHHHH
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLG-----PDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQ----DILDL 70 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~-----~~~s~~~kgEs~~Dt~~~ls~~~-D~iv~R~~~~~----~~~~~ 70 (261)
+|.||.+.+..-+.+|+.|+.+.--..-.+. +..-....+.+..=+....+.+. +++.|=.+... .+..+
T Consensus 2 iG~if~~~~~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~si 81 (400)
T cd06392 2 IGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSL 81 (400)
T ss_pred eeeccCCCchHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHH
Confidence 5789999888999999999999864432211 11113456777777777766674 56666555443 35677
Q ss_pred hhhCCCcEEeC-CC-----------------C----CCChh----HHHHHHHHHHHHhCCCCCcEEEEEcCC---CchHH
Q 024871 71 AKFATVPVING-LT-----------------D----YNHPC----QIMADALTIIEHVGRLEGTKVVYVGDG---NNIVH 121 (261)
Q Consensus 71 a~~~~vPVINa-~~-----------------~----~~HPt----Q~L~Dl~Ti~e~~g~l~~~~i~~vGd~---~~v~~ 121 (261)
+....||.|-- .. . .-||+ +|++|+. ++ +++.+++++-|. .+.+.
T Consensus 82 c~~l~VP~is~~~~~~~~~~~~~~~~p~~~~~~~~~~lrp~~~~~~Ai~dlV---~~---~~W~~v~~iYD~d~gl~~lq 155 (400)
T cd06392 82 TDAMHIPHLFVQRNSGGSPRTACHLNPSPEGEEYTLAARPPVRLNDVMLKLV---TE---LRWQKFIVFYDSEYDIRGLQ 155 (400)
T ss_pred hccCcCCcEeecccccccccccccCCCCcCcCceeEEecCchHHHHHHHHHH---Hh---CCCcEEEEEEECcccHHHHH
Confidence 78889998882 21 0 12444 4555554 33 346777766663 34666
Q ss_pred HHHHHHhcCCcEEEE
Q 024871 122 SWLLMASVIPFHFVC 136 (261)
Q Consensus 122 S~~~~~~~~g~~~~~ 136 (261)
.+...+...+.++.+
T Consensus 156 ~L~~~~~~~~~~I~~ 170 (400)
T cd06392 156 SFLDQASRLGLDVSL 170 (400)
T ss_pred HHHHHHhhcCceEEE
Confidence 777777776665543
|
N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.96 E-value=17 Score=33.01 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=44.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC---CCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG---ADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~---aDviy~~~ 180 (261)
+|++|| .+++...++..+...|.++++.. ..++..+.+++.| ...++++++++++ +|+|.+-.
T Consensus 2 ~Ig~IG-lG~mG~~mA~~L~~~g~~v~v~d-----r~~~~~~~~~~~g---~~~~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 2 KLGLIG-LGKMGGNMAERLREDGHEVVGYD-----VNQEAVDVAGKLG---ITARHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred EEEEEc-ccHHHHHHHHHHHhCCCEEEEEE-----CCHHHHHHHHHCC---CeecCCHHHHHHhCCCCCEEEEEe
Confidence 799999 57888888888778888877553 3344445555555 3567889998876 58887753
|
|
| >PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=9.6 Score=34.06 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=48.6
Q ss_pred CCcEEEEEcC--CCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCC----CeEEEEcCHHHHhCCCCEEEE
Q 024871 106 EGTKVVYVGD--GNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGI----SKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 106 ~~~~i~~vGd--~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~----~~i~~~~d~~~a~~~aDviy~ 178 (261)
.+.+|+.++. +.|+. +.+.++..||+ .++++.|.... .++.+. ...|. ....+++++++++++++.+|.
T Consensus 3 ~~i~vVLv~~~~pgNiG-aiaRa~~~fG~~~l~lv~p~~~~-~~~a~~--~a~GA~~~l~~a~i~~~l~eal~~~~~vva 78 (245)
T PRK15114 3 QNIRIVLVETSHTGNMG-SVARAMKTMGLTNLWLVNPLVKP-DSQAIA--LAAGASDVIGNATIVDTLDEALAGCSLVVG 78 (245)
T ss_pred CCeEEEEeCCCCCCcHH-HHHHHHHhcCCCEEEEeCCCCCC-cCHHHH--HcCCchhhcccCeEecCHHHHHhcCCEEEE
Confidence 5678889884 56765 56777888997 78888887543 233222 22332 245668899999999998887
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
+.
T Consensus 79 tt 80 (245)
T PRK15114 79 TS 80 (245)
T ss_pred Ec
Confidence 64
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.80 E-value=5.3 Score=36.66 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=44.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+||| .+++....+.-+..-|..+++.-.. + +...+.+++.|. +...++.|+++++|||++-.
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~---~-~ka~~~~~~~Ga---~~a~s~~eaa~~aDvVitmv 65 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRT---P-EKAAELLAAAGA---TVAASPAEAAAEADVVITML 65 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCC---h-hhhhHHHHHcCC---cccCCHHHHHHhCCEEEEec
Confidence 3799999 5777777777777778777655321 1 111344556663 45678899999999999964
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=81.56 E-value=3.3 Score=34.39 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=56.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE---------------------
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI--------------------- 162 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~--------------------- 162 (261)
.+...+|+++|. ++|...-+.++..+|++++.. ..+ ++..+..+..+...+.+
T Consensus 17 ~~~p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~--d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 17 GVPPAKVVVTGA-GRVGQGAAEIAKGLGAEVVVP--DER---PERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp EE-T-EEEEEST-SHHHHHHHHHHHHTT-EEEEE--ESS---HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCCCeEEEEECC-CHHHHHHHHHHhHCCCEEEec--cCC---HHHHHhhhcccCceEEEcccccccccccchhhhhHHHH
Confidence 466789999995 889999999999999997644 222 23333444444222322
Q ss_pred --EcCHHHHhCCCCEEEEec--ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEE
Q 024871 163 --TNDPKEVVQGADVVYSDV--WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYF 216 (261)
Q Consensus 163 --~~d~~~a~~~aDviy~~~--w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~ 216 (261)
...+.+.++.+|+|++.. |.. ..|.-|+++.++..++...|
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~-------------~~P~lvt~~~~~~m~~gsvI 135 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGK-------------RAPRLVTEEMVKSMKPGSVI 135 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTS-------------S---SBEHHHHHTSSTTEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCC-------------CCCEEEEhHHhhccCCCceE
Confidence 113457789999988753 321 23566999999988765443
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.06 E-value=11 Score=34.20 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC-----------CeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----------SKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~-----------~~i~~~~d~~~a~~~aDvi 176 (261)
.||+++|- +++...++..+..-|.++.+.... ++..+.+++.+. ..+..+.|++++++++|+|
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 75 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVTLWARD-----PEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLI 75 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEE
Confidence 47999994 788888888887778887776542 233343443320 1356678888899999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.-.
T Consensus 76 i~~v 79 (325)
T PRK00094 76 LVAV 79 (325)
T ss_pred EEeC
Confidence 8864
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=80.96 E-value=10 Score=37.78 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=46.6
Q ss_pred hccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc
Q 024871 53 YNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF 132 (261)
Q Consensus 53 ~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~ 132 (261)
=+|+|+-|.. ...-+.++.++|||.-.-+.+-=-|+| +..+.+ +.||++||- .++....-..+..++.
T Consensus 54 ~~dviIsrG~---ta~~i~~~~~iPVv~i~~s~~Dil~al----~~a~~~----~~~ia~vg~-~~~~~~~~~~~~ll~~ 121 (526)
T TIGR02329 54 RCDVVVAGGS---NGAYLKSRLSLPVIVIKPTGFDVMQAL----ARARRI----ASSIGVVTH-QDTPPALRRFQAAFNL 121 (526)
T ss_pred CCcEEEECch---HHHHHHHhCCCCEEEecCChhhHHHHH----HHHHhc----CCcEEEEec-CcccHHHHHHHHHhCC
Confidence 3699999954 455555678999999654444333332 333333 468999996 4555566566666666
Q ss_pred EEEEeC
Q 024871 133 HFVCAC 138 (261)
Q Consensus 133 ~~~~~~ 138 (261)
++.+.+
T Consensus 122 ~i~~~~ 127 (526)
T TIGR02329 122 DIVQRS 127 (526)
T ss_pred ceEEEE
Confidence 655544
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.95 E-value=8.8 Score=34.63 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=43.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+|+| .+|+..+++..+..-| .++++..+ +++-.+.+.+ .| ++.+++..++++++|+|+.-.
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~v~~r-----~~~~~~~l~~~~g---~~~~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQIICSDL-----NVSNLKNASDKYG---ITITTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEEEECC-----CHHHHHHHHHhcC---cEEeCCcHHHHhhCCEEEEEe
Confidence 5899999 4788888887765544 25666554 2333444443 55 355778888999999998764
|
|
| >cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like | Back alignment and domain information |
|---|
Probab=80.94 E-value=18 Score=34.67 Aligned_cols=117 Identities=14% Similarity=0.023 Sum_probs=70.0
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-CCCC----hhH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNH----PCQ 90 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~-~~~H----PtQ 90 (261)
+..=...+|.++..+ +..|-|++|..+.=++-..+++-+.......+.+.+.-++|.+.... -.-. =.+
T Consensus 184 i~~lL~~~Gi~v~~~------~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~T~~~l~ 257 (426)
T cd01972 184 FKRLLNELGLRVNAI------IAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEATDKWLR 257 (426)
T ss_pred HHHHHHHcCCeEEEE------eCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHHHHHHHH
Confidence 444566778887655 23467788887766666666654433345566777778999887431 1111 223
Q ss_pred HHHHHHHHH-------------------HHhCCCCCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCC
Q 024871 91 IMADALTII-------------------EHVGRLEGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACP 139 (261)
Q Consensus 91 ~L~Dl~Ti~-------------------e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P 139 (261)
.|++++-+. +....|+|+|+++.|+... ..+++..+.-+| +++..++-
T Consensus 258 ~ia~~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~-~~~~~~~l~elG~~~v~~~~~ 325 (426)
T cd01972 258 EIAKVLGMEAEAEAVIEREHERVAPEIEELRKALKGKKAIVETGAAY-GHLLIAVLRELGFGEVPVVLV 325 (426)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-HHHHHHHHHHcCCceEEEEEe
Confidence 344433221 1113489999999998654 445555566789 88776543
|
This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated. |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=80.77 E-value=40 Score=30.89 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhC-CCCCcEEEEEcCCC---chHHHHHHHHhcCCc-------EEEEeCCCCCC------CCHHHHHHHHH
Q 024871 92 MADALTIIEHVG-RLEGTKVVYVGDGN---NIVHSWLLMASVIPF-------HFVCACPKGFE------PDKETVEKARK 154 (261)
Q Consensus 92 L~Dl~Ti~e~~g-~l~~~~i~~vGd~~---~v~~S~~~~~~~~g~-------~~~~~~P~~~~------~~~~~~~~~~~ 154 (261)
|+=++.-.+..| +|+..||+++|-+. .++.-++.....-|+ +++++--+|+- +.+....++++
T Consensus 9 lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~ 88 (279)
T cd05312 9 LAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARK 88 (279)
T ss_pred HHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhh
Confidence 444444444444 59999999999862 355555554433455 56666555432 23333344544
Q ss_pred hCCCeEEEEcCHHHHhC--CCCEEEEec
Q 024871 155 AGISKIEITNDPKEVVQ--GADVVYSDV 180 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~--~aDviy~~~ 180 (261)
.. . ....++.|+++ ++||++-.+
T Consensus 89 ~~-~--~~~~~L~e~i~~v~ptvlIG~S 113 (279)
T cd05312 89 DE-E--KEGKSLLEVVKAVKPTVLIGLS 113 (279)
T ss_pred cC-c--ccCCCHHHHHHhcCCCEEEEeC
Confidence 32 1 23468999999 999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain | Back alignment and domain information |
|---|
Probab=80.72 E-value=50 Score=32.31 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=80.2
Q ss_pred HHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC----CCCChhHHHH
Q 024871 18 TGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT----DYNHPCQIMA 93 (261)
Q Consensus 18 ~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~----~~~HPtQ~L~ 93 (261)
.=...+|.++... +..+-|++|..+.-++-..+++-........+.+.+.-++|.+...- +..-=-+.|+
T Consensus 227 ~lL~~~Gi~v~~~------~sg~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~T~~~Lr~ia 300 (466)
T TIGR01282 227 ILLEEIGLRVVAQ------WSGDGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKIAESLRKIA 300 (466)
T ss_pred HHHHHcCCeEEEE------ECCCCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHHHHHHHHHHH
Confidence 3455677776532 12346777777766666666554322223456666777999887531 1111112223
Q ss_pred HHHH--H------------------HH-HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHH
Q 024871 94 DALT--I------------------IE-HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 94 Dl~T--i------------------~e-~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
.++- + .+ ....|+|+|+++.|+.. -.++++..+.-+|++++.++- .+.-.++.-+..
T Consensus 301 ~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~-~~~~~~~~l~ELGmevv~~g~-~~~~~~~~~~~~ 378 (466)
T TIGR01282 301 EFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGL-RPRHVIGAFEDLGMEVIGTGY-EFAHNDDYERTT 378 (466)
T ss_pred HHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHHHHHCCCEEEEEee-ecCCHHHHHHHH
Confidence 3221 1 11 22458999999988653 345555566679999986643 222233333333
Q ss_pred HHhCCCeEEEEc--C---HHHHh--CCCCEEEEec
Q 024871 153 RKAGISKIEITN--D---PKEVV--QGADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~--d---~~~a~--~~aDviy~~~ 180 (261)
+..+. ...+.+ | +++.+ .+.|+++...
T Consensus 379 ~~~~~-~~~i~~~~d~~el~~~i~~~~pDl~ig~~ 412 (466)
T TIGR01282 379 KYMKD-GTLIYDDVTHYEFEEFVEKLKPDLVGSGI 412 (466)
T ss_pred HhcCC-CeEEeeCCCHHHHHHHHHHhCCCEEEecC
Confidence 33332 222232 2 23333 3678887753
|
Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=80.54 E-value=11 Score=36.29 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=41.8
Q ss_pred cEEEEEcCCCchHHHHHH---HH---hcCCcEEEEeCCCCCCCCHHHHHH--------HHHhC-CCeEEEEcCHHHHhCC
Q 024871 108 TKVVYVGDGNNIVHSWLL---MA---SVIPFHFVCACPKGFEPDKETVEK--------ARKAG-ISKIEITNDPKEVVQG 172 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~---~~---~~~g~~~~~~~P~~~~~~~~~~~~--------~~~~g-~~~i~~~~d~~~a~~~ 172 (261)
+||+++|- +.+..++.. ++ +.-|.++++.... ++.++. +...+ ..+++.+.|+++++++
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did-----~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~ 74 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDID-----EERLETVEILAKKIVEELGAPLKIEATTDRREALDG 74 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCC-----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC
Confidence 48999996 445555433 22 3335677776543 222221 12222 1467789999999999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+...
T Consensus 75 AD~Vi~ai 82 (423)
T cd05297 75 ADFVINTI 82 (423)
T ss_pred CCEEEEee
Confidence 99998864
|
linked to 3D####ucture |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=80.13 E-value=5.7 Score=37.87 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=43.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCC-------------CCC-HHHHHHHHHhCCCeEEEEcCHHHHhCCCC
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGF-------------EPD-KETVEKARKAGISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~-------------~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~aD 174 (261)
||+++|- +++...++..++.-|.+++...+..- ++. ++++....+.| .+..++|+.++++++|
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRDAD 78 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhhCC
Confidence 7999994 77888887777777888776643211 010 01111111122 4778889999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+...
T Consensus 79 vvii~v 84 (411)
T TIGR03026 79 VIIICV 84 (411)
T ss_pred EEEEEe
Confidence 988753
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=80.09 E-value=6.3 Score=37.88 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-------------CCCCCCCHHHHHHHHHhC-CCeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-------------PKGFEPDKETVEKARKAG-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-------------P~~~~~~~~~~~~~~~~g-~~~i~~~~d~~~a~~~a 173 (261)
.||+++|- +.|.-+....++.+|-+++++- +|-|+|. +-+.++++. .+.+..|.|.++|++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~Epg--Le~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPG--LEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCcc--HHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 47889994 7788888888888998887664 2334332 222233332 23589999999999999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|+++--.
T Consensus 78 dv~fIav 84 (414)
T COG1004 78 DVVFIAV 84 (414)
T ss_pred CEEEEEc
Confidence 9988753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 261 | ||||
| 1a1s_A | 314 | Ornithine Carbamoyltransferase From Pyrococcus Furi | 3e-79 | ||
| 1pvv_A | 315 | Refined Structure Of Pyrococcus Furiosus Ornithine | 3e-79 | ||
| 4ep1_A | 340 | Crystal Structure Of Anabolic Ornithine Carbamoyltr | 2e-66 | ||
| 1fb5_A | 320 | Low Resolution Structure Of Ovine Ornithine Transca | 8e-64 | ||
| 1oth_A | 321 | Crystal Structure Of Human Ornithine Transcarbamoyl | 5e-63 | ||
| 4f2g_A | 309 | The Crystal Structure Of Ornithine Carbamoyltransfe | 1e-62 | ||
| 3gd5_A | 323 | Crystal Structure Of Ornithine Carbamoyltransferase | 3e-62 | ||
| 2ef0_A | 301 | Crystal Structure Of Ornithine Carbamoyltransferase | 7e-62 | ||
| 1vlv_A | 325 | Crystal Structure Of Ornithine Carbamoyltransferase | 5e-57 | ||
| 2i6u_A | 307 | Crystal Structure Of Ornithine Carbamoyltransferase | 1e-55 | ||
| 4a8h_A | 355 | Crystal Structure Of Putrescine Transcarbamylase Fr | 9e-55 | ||
| 4a8t_A | 339 | Crystal Structure Of Putrescine Transcarbamylase Fr | 1e-54 | ||
| 3txx_A | 359 | Crystal Structure Of Putrescine Transcarbamylase Fr | 1e-54 | ||
| 1dxh_A | 335 | Catabolic Ornithine Carbamoyltransferase From Pseud | 2e-51 | ||
| 1ort_A | 335 | Ornithine Transcarbamoylase From Pseudomonas Aerugi | 3e-51 | ||
| 3tpf_A | 307 | Crystal Structure Of Anabolic Ornithine Carbamoyltr | 3e-49 | ||
| 3upd_A | 358 | 2.9 Angstrom Crystal Structure Of Ornithine Carbamo | 2e-47 | ||
| 1akm_A | 333 | Ornithine Transcarbamylase From Escherichia Coli Le | 9e-46 | ||
| 2w37_A | 359 | Crystal Structure Of The Hexameric Catabolic Ornith | 1e-45 | ||
| 3sds_A | 353 | Crystal Structure Of A Mitochondrial Ornithine Carb | 1e-45 | ||
| 2otc_A | 333 | Ornithine Transcarbamoylase Complexed With N- (Phos | 2e-45 | ||
| 3grf_A | 328 | X-Ray Structure Of Ornithine Transcarbamoylase From | 3e-43 | ||
| 4amu_A | 365 | Structure Of Ornithine Carbamoyltransferase From My | 1e-42 | ||
| 3m5c_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 5e-32 | ||
| 3m5d_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 2e-31 | ||
| 3kzc_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 3e-31 | ||
| 3l05_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 3e-31 | ||
| 3m4n_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 3e-31 | ||
| 3l02_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 4e-31 | ||
| 3l04_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 4e-31 | ||
| 3l06_A | 359 | Crystal Structure Of N-Acetyl-L-Ornithine Transcarb | 4e-31 | ||
| 2be7_A | 326 | Crystal Structure Of The Unliganded (T-State) Aspar | 7e-18 | ||
| 1ml4_A | 308 | The Pala-Liganded Aspartate Transcarbamoylase Catal | 6e-17 | ||
| 2g7m_X | 338 | Crystal Structure Of B. Fragilis N-Succinylornithin | 2e-16 | ||
| 1js1_X | 324 | Crystal Structure Of A New Transcarbamylase From Th | 3e-16 | ||
| 2fg6_X | 338 | N-Succinyl-L-Ornithine Transcarbamylase From B. Fra | 4e-16 | ||
| 2rgw_A | 306 | Catalytic Subunit Of M. Jannaschii Aspartate Transc | 2e-15 | ||
| 2yfk_A | 418 | Crystal Structure Of A Putative Transcarbamoylase F | 1e-12 | ||
| 3lxm_A | 335 | 2.00 Angstrom Resolution Crystal Structure Of A Cat | 4e-12 | ||
| 2a0f_A | 310 | Structure Of D236a Mutant E. Coli Aspartate Transca | 8e-11 | ||
| 4e2f_I | 310 | Crystal Structure Of E. Coli Aspartate Transcarbamo | 1e-10 | ||
| 1sku_A | 310 | E. Coli Aspartate Transcarbamylase 240's Loop Mutan | 3e-10 | ||
| 1ezz_A | 310 | Crystal Structure Of E. Coli Aspartate Transcarbamo | 3e-10 | ||
| 1ekx_A | 311 | The Isolated, Unregulated Catalytic Trimer Of Aspar | 3e-10 | ||
| 9atc_A | 310 | Atcase Y165f Mutant Length = 310 | 3e-10 | ||
| 1raa_A | 310 | Crystal Structure Of Ctp-Ligated T State Aspartate | 4e-10 | ||
| 1i5o_A | 310 | Crystal Structure Of Mutant R105a Of E. Coli Aspart | 5e-10 | ||
| 1tth_A | 310 | Aspartate Transcarbamoylase Catalytic Chain Mutant | 6e-10 | ||
| 1d09_A | 310 | Aspartate Transcarbamoylase Complexed With N-Phosph | 1e-09 | ||
| 3mpu_A | 310 | Crystal Structure Of The C47aA241C DISULFIDE-Linked | 1e-09 | ||
| 3d6n_B | 291 | Crystal Structure Of Aquifex Dihydroorotase Activat | 2e-09 | ||
| 1xjw_A | 310 | The Structure Of E. Coli Aspartate Transcarbamoylas | 2e-09 | ||
| 1at1_A | 310 | Crystal Structures Of Phosphonoacetamide Ligated T | 3e-09 | ||
| 3r7d_A | 304 | Crystal Structure Of Unliganded Aspartate Transcarb | 4e-09 | ||
| 2be9_A | 300 | Crystal Structure Of The Ctp-Liganded (T-State) Asp | 4e-09 | ||
| 1pg5_A | 299 | Crystal Structure Of The Unligated (t-state) Aspart | 5e-09 | ||
| 2at2_A | 300 | Molecular Structure Of Bacillus Subtilis Aspartate | 9e-09 | ||
| 1acm_A | 310 | Arginine 54 In The Active Site Of Escherichia Coli | 2e-08 | ||
| 3q98_A | 399 | Structure Of Ygew Encoded Protein From E. Coli Leng | 1e-07 | ||
| 2atc_A | 305 | Crystal And Molecular Structures Of Native And Ctp- | 6e-07 |
| >pdb|1A1S|A Chain A, Ornithine Carbamoyltransferase From Pyrococcus Furiosus Length = 314 | Back alignment and structure |
|
| >pdb|1PVV|A Chain A, Refined Structure Of Pyrococcus Furiosus Ornithine Carbamoyltransferase At 1.87 A Length = 315 | Back alignment and structure |
|
| >pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine Carbamoyltransferase From Bacillus Anthracis Length = 340 | Back alignment and structure |
|
| >pdb|1FB5|A Chain A, Low Resolution Structure Of Ovine Ornithine Transcarbmoylase In The Unliganded State Length = 320 | Back alignment and structure |
|
| >pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase Complexed With N-Phosphonacetyl-L-Ornithine Length = 321 | Back alignment and structure |
|
| >pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase From Burkholderia Thailandensis E264 Length = 309 | Back alignment and structure |
|
| >pdb|3GD5|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From Gloeobacter Violaceus Length = 323 | Back alignment and structure |
|
| >pdb|2EF0|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From Thermus Thermophilus Length = 301 | Back alignment and structure |
|
| >pdb|1VLV|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase (tm1097) From Thermotoga Maritima At 2.25 A Resolution Length = 325 | Back alignment and structure |
|
| >pdb|2I6U|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase Complexed With Carbamoyl Phosphate And L-Norvaline From Mycobacterium Tuberculosis (Rv1656) At 2.2 A Length = 307 | Back alignment and structure |
|
| >pdb|4A8H|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From Enterococcus Faecalis With N-(Phosphonoacetyl)-Putrescine Length = 355 | Back alignment and structure |
|
| >pdb|4A8T|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From Enterococcus Faecalis Lacking Its C-Terminal Helix, With Bound N5-(Phosphonoacetyl)-L-Ornithine Length = 339 | Back alignment and structure |
|
| >pdb|3TXX|A Chain A, Crystal Structure Of Putrescine Transcarbamylase From Enterococcus Faecalis Length = 359 | Back alignment and structure |
|
| >pdb|1DXH|A Chain A, Catabolic Ornithine Carbamoyltransferase From Pseudomonas Aeruginosa Length = 335 | Back alignment and structure |
|
| >pdb|1ORT|A Chain A, Ornithine Transcarbamoylase From Pseudomonas Aeruginosa Length = 335 | Back alignment and structure |
|
| >pdb|3TPF|A Chain A, Crystal Structure Of Anabolic Ornithine Carbamoyltransferase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 307 | Back alignment and structure |
|
| >pdb|3UPD|A Chain A, 2.9 Angstrom Crystal Structure Of Ornithine Carbamoyltransferase (Argf) From Vibrio Vulnificus Length = 358 | Back alignment and structure |
|
| >pdb|1AKM|A Chain A, Ornithine Transcarbamylase From Escherichia Coli Length = 333 | Back alignment and structure |
|
| >pdb|2W37|A Chain A, Crystal Structure Of The Hexameric Catabolic Ornithine Transcarbamylase From Lactobacillus Hilgardii Length = 359 | Back alignment and structure |
|
| >pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine Carbamoyltransferase From Coccidioides Immitis Length = 353 | Back alignment and structure |
|
| >pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed With N- (Phosphonacetyl)-L-Ornithine Length = 333 | Back alignment and structure |
|
| >pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From Giardia Lamblia Length = 328 | Back alignment and structure |
|
| >pdb|4AMU|A Chain A, Structure Of Ornithine Carbamoyltransferase From Mycoplasma Penetrans With A P321 Space Group Length = 365 | Back alignment and structure |
|
| >pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase K302e Mutant Complexed With Palao Length = 359 | Back alignment and structure |
|
| >pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase K302r Mutant Complexed With Palao Length = 359 | Back alignment and structure |
|
| >pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase Length = 359 | Back alignment and structure |
|
| >pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase E92s Mutant Complexed With Carbamyl Phosphate And N-Succinyl-L-Norvaline Length = 359 | Back alignment and structure |
|
| >pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase K302a Mutant Complexed With Palao Length = 359 | Back alignment and structure |
|
| >pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase E92a Mutant Complexed With Carbamyl Phosphate And N- Succinyl-L-Norvaline Length = 359 | Back alignment and structure |
|
| >pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase E92p Mutant Complexed With Carbamyl Phosphate And N- Succinyl-L-Norvaline Length = 359 | Back alignment and structure |
|
| >pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase E92v Mutant Complexed With Carbamyl Phosphate And N- Succinyl-L-Norvaline Length = 359 | Back alignment and structure |
|
| >pdb|2BE7|A Chain A, Crystal Structure Of The Unliganded (T-State) Aspartate Transcarbamoylase Of The Psychrophilic Bacterium Moritella Profunda Length = 326 | Back alignment and structure |
|
| >pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic Subunit From Pyrococcus Abyssi Length = 308 | Back alignment and structure |
|
| >pdb|2G7M|X Chain X, Crystal Structure Of B. Fragilis N-Succinylornithine Transcarbamylase P90e Mutant Complexed With Carbamoyl Phosphate And N-Acetylnorvaline Length = 338 | Back alignment and structure |
|
| >pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The Anaerobic Bacterium Bacteroides Fragilis At 2.0 A Resolution Length = 324 | Back alignment and structure |
|
| >pdb|2FG6|X Chain X, N-Succinyl-L-Ornithine Transcarbamylase From B. Fragilis Complexed With Sulfate And N-Succinyl-L-Norvaline Length = 338 | Back alignment and structure |
|
| >pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate Transcarbamoylase Length = 306 | Back alignment and structure |
|
| >pdb|2YFK|A Chain A, Crystal Structure Of A Putative Transcarbamoylase From Enterococcus Faecalis Length = 418 | Back alignment and structure |
|
| >pdb|3LXM|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A Catalytic Subunit Of An Aspartate Carbamoyltransferase (Pyrb) From Yersinia Pestis Co92 Length = 335 | Back alignment and structure |
|
| >pdb|2A0F|A Chain A, Structure Of D236a Mutant E. Coli Aspartate Transcarbamoylase In Presence Of Phosphonoacetamide At 2.90 A Resolution Length = 310 | Back alignment and structure |
|
| >pdb|4E2F|I Chain I, Crystal Structure Of E. Coli Aspartate Transcarbamoylase K164eE239K Mutant In An Intermediate State Length = 310 | Back alignment and structure |
|
| >pdb|1SKU|A Chain A, E. Coli Aspartate Transcarbamylase 240's Loop Mutant (K244n) Length = 310 | Back alignment and structure |
|
| >pdb|1EZZ|A Chain A, Crystal Structure Of E. Coli Aspartate Transcarbamoylase P268a Mutant In The T-State Length = 310 | Back alignment and structure |
|
| >pdb|1EKX|A Chain A, The Isolated, Unregulated Catalytic Trimer Of Aspartate Transcarbamoylase Complexed With Bisubstrate Analog Pala (N-(Phosphonacetyl)-L-Aspartate) Length = 311 | Back alignment and structure |
|
| >pdb|9ATC|A Chain A, Atcase Y165f Mutant Length = 310 | Back alignment and structure |
|
| >pdb|1RAA|A Chain A, Crystal Structure Of Ctp-Ligated T State Aspartate Transcarbamoylase At 2.5 Angstroms Resolution: Implications For Atcase Mutants And The Mechanism Of Negative Cooperativity Length = 310 | Back alignment and structure |
|
| >pdb|1I5O|A Chain A, Crystal Structure Of Mutant R105a Of E. Coli Aspartate Transcarbamoylase Length = 310 | Back alignment and structure |
|
| >pdb|1TTH|A Chain A, Aspartate Transcarbamoylase Catalytic Chain Mutant Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate) (Pala) Length = 310 | Back alignment and structure |
|
| >pdb|1D09|A Chain A, Aspartate Transcarbamoylase Complexed With N-Phosphonacetyl-L- Aspartate (Pala) Length = 310 | Back alignment and structure |
|
| >pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E. Coli Aspartate Transcarbamoylase Holoenzyme Length = 310 | Back alignment and structure |
|
| >pdb|3D6N|B Chain B, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 291 | Back alignment and structure |
|
| >pdb|1XJW|A Chain A, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a Mutant In The R-State Length = 310 | Back alignment and structure |
|
| >pdb|1AT1|A Chain A, Crystal Structures Of Phosphonoacetamide Ligated T And Phosphonoacetamide And Malonate Ligated R States Of Aspartate Carbamoyltransferase At 2.8-Angstroms Resolution And Neutral PH Length = 310 | Back alignment and structure |
|
| >pdb|3R7D|A Chain A, Crystal Structure Of Unliganded Aspartate Transcarbamoylase From Bacillus Subtilis Length = 304 | Back alignment and structure |
|
| >pdb|2BE9|A Chain A, Crystal Structure Of The Ctp-Liganded (T-State) Aspartate Transcarbamoylase From The Extremely Thermophilic Archaeon Sulfolobus Acidocaldarius Length = 300 | Back alignment and structure |
|
| >pdb|1PG5|A Chain A, Crystal Structure Of The Unligated (t-state) Aspartate Transcarbamoylase From The Extremely Thermophilic Archaeon Sulfolobus Acidocaldarius Length = 299 | Back alignment and structure |
|
| >pdb|2AT2|A Chain A, Molecular Structure Of Bacillus Subtilis Aspartate Transcarbamoylase At 3.0 Angstroms Resolution Length = 300 | Back alignment and structure |
|
| >pdb|1ACM|A Chain A, Arginine 54 In The Active Site Of Escherichia Coli Aspartate Transcarbamoylase Is Critical For Catalysis: A Site-Specific Mutagenesis, Nmr And X-Ray Crystallography Study Length = 310 | Back alignment and structure |
|
| >pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli Length = 399 | Back alignment and structure |
|
| >pdb|2ATC|A Chain A, Crystal And Molecular Structures Of Native And Ctp-Liganded Aspartate Carbamoyltransferase From Escherichia Coli Length = 305 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Length = 315 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-165
Identities = 137/263 (52%), Positives = 189/263 (71%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G ++G KVVYVGDGNN+
Sbjct: 109 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVA 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS ++ + + V A P+G+EPD++ ++ A + E+ +DP + V+ ADV+Y
Sbjct: 169 HSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLPA RG EVT+ VI++P
Sbjct: 229 TDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPN 288
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+V+ QAENR+HAQ A++ +G
Sbjct: 289 SVVWDQAENRLHAQKAVLALVMG 311
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 309 | Back alignment and structure |
|---|
Score = 456 bits (1175), Expect = e-164
Identities = 116/260 (44%), Positives = 161/260 (61%), Gaps = 3/260 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR+SFE G LGGHA+++ D Q+G+ E D+A+V+ R DIIM R
Sbjct: 48 LAMIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F I A+ + VPVINGLT+ HPCQ++AD T EH G + G V +VGD NN++
Sbjct: 108 TFEQDIIQRFAENSRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNML 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
++W+ A ++ F + P G+ D + V+ ++ +DP E +GAD+V +DV
Sbjct: 168 YTWIQAARILDFKLQLSTPPGYALDAKLVDAESAP---FYQVFDDPNEACKGADLVTTDV 224
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMG + E RK+AF + VDE +M A A FMHCLPA RG EVT GVI+ P S+V
Sbjct: 225 WTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284
Query: 241 FPQAENRMHAQNAIMLHALG 260
+ +AENR+H Q A+M L
Sbjct: 285 WDEAENRLHVQKALMEFLLL 304
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A Length = 321 | Back alignment and structure |
|---|
Score = 455 bits (1172), Expect = e-163
Identities = 118/263 (44%), Positives = 162/263 (61%), Gaps = 4/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH L+G + ++GDGNNI+
Sbjct: 109 VYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNIL 168
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS ++ A+ H A PKG+EPD + A + +K+ +TNDP E G +V+
Sbjct: 169 HSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLI 228
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+D W SMG++EE R QAFQG+QV K+A F+HCLP + EV + V +P
Sbjct: 229 TDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR-KPEEVDDEVFYSPR 287
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S+VFP+AENR A+M+ L
Sbjct: 288 SLVFPEAENRKWTIMAVMVSLLT 310
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} Length = 307 | Back alignment and structure |
|---|
Score = 454 bits (1171), Expect = e-163
Identities = 97/264 (36%), Positives = 154/264 (58%), Gaps = 4/264 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR++FE + LGG A++L +D+Q+ + E +D ARV+ D +M R
Sbjct: 39 LAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMR 98
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEG-TKVVYVGDGNNI 119
V H+ +L+ A+++ PVIN L++ HP Q++ D TI E G KV ++GD NN+
Sbjct: 99 VNKHETLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNM 158
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+SWL+ A+++ F A PK ++ E E A K + +KI + D E ++ DVV
Sbjct: 159 CNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVV 218
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W SMG++ E + + F+GF +DE M +A A +HCLPA RG EV+E + E
Sbjct: 219 ITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKH 278
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
++F +A NR++ A++
Sbjct: 279 ADVIFEEARNRLYVVKALLCFLDN 302
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} Length = 323 | Back alignment and structure |
|---|
Score = 454 bits (1171), Expect = e-163
Identities = 115/263 (43%), Positives = 165/263 (62%), Gaps = 3/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ ++F K S RTRVSF LGG I L P + Q+G+ E RD ARVL RY D + R
Sbjct: 51 LGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIR 110
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F ++ + A +A +PVIN LTD+ HPCQ++AD LTI E+ GRL G K+ YVGDGNN+
Sbjct: 111 TFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVA 170
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS LL + + A P+GF PD +A + ++++I DP E +GA ++Y
Sbjct: 171 HSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILY 230
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E +R Q F+ +Q++ L+ A +A +HCLPA RG E+T+ V+E P
Sbjct: 231 TDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPR 290
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
S ++ +AENR+HAQ A++ +G
Sbjct: 291 SRIWDEAENRLHAQKAVLAALMG 313
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} Length = 340 | Back alignment and structure |
|---|
Score = 453 bits (1168), Expect = e-162
Identities = 121/263 (46%), Positives = 169/263 (64%), Gaps = 4/263 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ +IF K S RTRVSFE G LGGH ++L ++QMG+ E D A+VL Y D IM R
Sbjct: 73 LGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIR 132
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E +G K+ YVGDGNN+
Sbjct: 133 TFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 192
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
HS LL ++ + H A P G+ P++E V+KA ++IEI ++P+ V AD +Y
Sbjct: 193 HSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIY 252
Query: 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPY 237
+DVW SMGQ+ E + FQ +Q+++ L+K A +F+HCLPA R EVT +I+ P
Sbjct: 253 TDVWMSMGQEGEEE-KYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQ 311
Query: 238 SIVFPQAENRMHAQNAIMLHALG 260
SIVF QA NR+HAQ A+++
Sbjct: 312 SIVFEQAGNRLHAQKALLVSLFK 334
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 301 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-162
Identities = 117/259 (45%), Positives = 161/259 (62%), Gaps = 6/259 (2%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++++F KPS+RTR + E LGGHA+YL + +G+RE RD A+ L R+ + I AR
Sbjct: 48 LALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIV 120
VF H+ + LA+ A VPV+N L+D HP Q +AD LT+ E G L G +V +VGDGNN++
Sbjct: 108 VFRHETVEALARHAKVPVVNALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVL 167
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180
+S L +A + A PKG+EPD +++A T+DPKE GA +Y+DV
Sbjct: 168 NSLLEVAPLAGLKVRVATPKGYEPDPGLLKRAN------AFFTHDPKEAALGAHALYTDV 221
Query: 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240
W SMGQ+ E R + FQGFQV+ L+KL P+ F+HCLPA G E TE + P S V
Sbjct: 222 WTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRV 281
Query: 241 FPQAENRMHAQNAIMLHAL 259
F QAENR+H A++L L
Sbjct: 282 FDQAENRLHTAKAVLLTLL 300
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Length = 307 | Back alignment and structure |
|---|
Score = 448 bits (1154), Expect = e-161
Identities = 112/264 (42%), Positives = 157/264 (59%), Gaps = 4/264 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G + LGGHA+ + Q+G+ E +D A+VL RY D I+ R
Sbjct: 42 VAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWR 101
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNI 119
FG + + +A ATVPVIN L+D HPCQ++AD TI E G L G ++ Y GDG NN+
Sbjct: 102 TFGQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNM 161
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
HS LL H A P+GF PD A + + + +T D GADV+
Sbjct: 162 AHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVL 221
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
+D W SMGQ+ + R + F+ FQ++ L+ LA A +HCLPA RG E+T+ V++ P
Sbjct: 222 VTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGP 281
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
S V+ +AENR+HAQ A+++ L
Sbjct: 282 ASAVWDEAENRLHAQKALLVWLLE 305
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} Length = 353 | Back alignment and structure |
|---|
Score = 441 bits (1136), Expect = e-157
Identities = 106/280 (37%), Positives = 150/280 (53%), Gaps = 21/280 (7%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++M+F+K S RTRVS E +GGH ++LG DDIQ+G E D + V+ I+AR
Sbjct: 69 VAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVAR 128
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-------------LEG 107
V H DI +LAK ++VPVIN L D HP Q +AD LTI E LEG
Sbjct: 129 VGPHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEG 188
Query: 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----SKIEI 162
K+ +VGD NN++ + A+ + + A P+G+E VE +KA +
Sbjct: 189 LKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ 248
Query: 163 TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL--AGPKAYFMHCL 220
T P+ V+ ADV+ +D W SMGQ+ E R +AF+ F+V L K A FMHCL
Sbjct: 249 TTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308
Query: 221 PAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
P EV++ V + S+VFP+AENR+ A + + +
Sbjct: 309 PRHPE-EVSDEVFYSERSLVFPEAENRLWAAISALEAFVV 347
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} Length = 339 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-155
Identities = 112/266 (42%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MARV
Sbjct: 68 MIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE 127
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD +
Sbjct: 128 RHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQV 187
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVV 176
S L+ + + +FV P+GF+ ++E K + +T D V+GAD +
Sbjct: 188 CFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-DDASSVEGADFL 246
Query: 177 YSDVWASMGQKE-EAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + E R + F +QV++ +M AG FMHCLPA RG EVT+ VI+
Sbjct: 247 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVID 306
Query: 235 APYSIVFPQAENRMHAQNAIMLHALG 260
SI F +AENR+ + ++++ +
Sbjct: 307 GKNSICFDEAENRLTSIRGLLVYLMN 332
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A Length = 355 | Back alignment and structure |
|---|
Score = 436 bits (1123), Expect = e-155
Identities = 112/266 (42%), Positives = 157/266 (59%), Gaps = 9/266 (3%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF + S RTRVSFET LGGH YL P IQ+G E D +RVL R DI+MARV
Sbjct: 46 MIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE 105
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNI 119
H I+DLA AT+PVING++DYNHP Q + D T++EH+ +LE KVV+VGD +
Sbjct: 106 RHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQV 165
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKIEITNDPKEVVQGADVV 176
S L+ + + +FV P+GF+ ++E K + +T D V+GAD +
Sbjct: 166 CFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVT-DDASSVEGADFL 224
Query: 177 YSDVWASMGQKE-EAAYRKQAF-QGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234
Y+DVW + + E R + F +QV++ +M AG FMHCLPA RG EVT+ VI+
Sbjct: 225 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVID 284
Query: 235 APYSIVFPQAENRMHAQNAIMLHALG 260
SI F +AENR+ + ++++ +
Sbjct: 285 GKNSICFDEAENRLTSIRGLLVYLMN 310
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Length = 325 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-155
Identities = 111/262 (42%), Positives = 165/262 (62%), Gaps = 5/262 (1%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
MIF K S RTR++FET F+ GGH I+L P+DI +G +E D ARVL R D IM R +
Sbjct: 63 MIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGY 122
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVH 121
+ + LA+++ VPV NGLTD HP Q +AD +TI E+ GRL+G KVV++GD NN+
Sbjct: 123 KQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVAT 182
Query: 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYS 178
S ++ + + +FV P+ +P + ++ ++ + T++ +E + GADVVY+
Sbjct: 183 SLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYT 242
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAERGVEVTEGVIEAPY 237
DVWASMG++++ R + +QV+E +M++ G + FMHCLPA +G EVT VIE
Sbjct: 243 DVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQ 302
Query: 238 SIVFPQAENRMHAQNAIMLHAL 259
S V+ +AENR H A+M+ L
Sbjct: 303 SRVWDEAENRKHTIKAVMIATL 324
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Length = 328 | Back alignment and structure |
|---|
Score = 423 bits (1089), Expect = e-151
Identities = 97/275 (35%), Positives = 147/275 (53%), Gaps = 17/275 (6%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARV 61
FAKPS+RTRVS ET + LGGHAIY + +G +E +D A V R DI AR+
Sbjct: 49 AFFAKPSLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARL 108
Query: 62 FGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV-------GRLEGTKVVYVG 114
+ + ++A+ A+VP IN L D+ HP Q++ D +TI E +G K Y G
Sbjct: 109 ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG 168
Query: 115 DG-NNIVHSWLLMASVIPFHFVCACP--KGFEPDKETVEKARKAGI-----SKIEITNDP 166
D NN+ + + +++ CP K F+P KE +++ + I+I +D
Sbjct: 169 DSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDC 228
Query: 167 KEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG 225
K+ +G DVVY+D W S +E R + FQVD+ +M + ++ FM+CLPA RG
Sbjct: 229 KKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRG 288
Query: 226 VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
E T VI+ P S+ + +A NR+H+ A++ L
Sbjct: 289 EEQTASVIDGPKSVCYDEAGNRLHSAMAVLDFFLH 323
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Length = 359 | Back alignment and structure |
|---|
Score = 411 bits (1058), Expect = e-146
Identities = 107/282 (37%), Positives = 155/282 (54%), Gaps = 25/282 (8%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
++F K S RTR +F T LG H YLG +DIQ+GK+E T D A+VL D I R F
Sbjct: 72 LLFEKSSTRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGF 131
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVH 121
D LA+ + VPV NGLTD HP Q++AD +T+ E+ G+L+G + ++GDG NN+ +
Sbjct: 132 KQSDAEILARDSGVPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNVAN 191
Query: 122 SWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVYS 178
S L+ +++ + PK P +ET A+ +K+ IT+D E ++G++VVY+
Sbjct: 192 SLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYT 251
Query: 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG---PKAYFMHCLPAERG---------- 225
DVW SMG+ R + +QV+ MK G + FMHCLPA
Sbjct: 252 DVWVSMGE-SNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIK 310
Query: 226 -------VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+EVT+ V + Y+ F +AENRMH+ A+M LG
Sbjct: 311 EKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLG 352
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A Length = 365 | Back alignment and structure |
|---|
Score = 407 bits (1048), Expect = e-144
Identities = 103/289 (35%), Positives = 147/289 (50%), Gaps = 31/289 (10%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
++F K S RTR +FE S LG Y+GP MGK+E D A+VL R+ D I R F
Sbjct: 76 ILFQKDSTRTRCAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGF 135
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD-GNNIVH 121
D+ L K++ VPV NGLTD HP QI+AD +T+ E G L+ K+V++GD NN+
Sbjct: 136 AQSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDYKNNVGV 195
Query: 122 SWLLMASVIPFHFVCACPKGFEP--DKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
S ++ A+ H V P ++ DK + K + + + D Q ADV+
Sbjct: 196 STMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVI 255
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERG---------- 225
Y+DVW S+G+ E R + FQVD ++K A F+HCLPA
Sbjct: 256 YTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSKEVA 315
Query: 226 --------------VEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+EVT+ V ++ ++ F QAENRMH+ AI+L +G
Sbjct: 316 TTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIG 364
|
| >3upd_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.91A {Vibrio vulnificus} Length = 358 | Back alignment and structure |
|---|
Score = 407 bits (1047), Expect = e-144
Identities = 112/283 (39%), Positives = 152/283 (53%), Gaps = 25/283 (8%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR +FE G Y+GP Q+G +E +D ARVL R D I R F
Sbjct: 75 LIFEKASTRTRCAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF 134
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH--VGRLEGTKVVYVGDG-NNI 119
G + +L FA VPV NGLTD HP QI+AD LT++EH L + Y+GD NN+
Sbjct: 135 GQAIVEELGAFAGVPVWNGLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNV 194
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+S ++ A+ + P+ + PD+E V + KI +T + E VQG D +
Sbjct: 195 GNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFL 254
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ EA R + +QV+ ++K G P FMHCLPA
Sbjct: 255 YTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIGKQV 314
Query: 223 -----ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+G+EVTE V E+ +SIVF +AENRMH A+M+ LG
Sbjct: 315 ADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATLG 357
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Length = 335 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-142
Identities = 117/284 (41%), Positives = 157/284 (55%), Gaps = 26/284 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R F
Sbjct: 50 LIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGF 109
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDG-NNIV 120
+ + +LAKFA VPV NGLTD HP Q++AD LT+ EH + L Y+GD NN+
Sbjct: 110 KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMG 169
Query: 121 HSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVVY 177
+S LL+ + + A PK P E V + +K +K+ +T DPKE V+G D V+
Sbjct: 170 NSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVH 229
Query: 178 SDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAER----------- 224
+DVW SMG+ EA R + +QV+ +MK G P+A FMHCLPA
Sbjct: 230 TDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIA 289
Query: 225 --------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 290 EQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 333
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Length = 333 | Back alignment and structure |
|---|
Score = 396 bits (1019), Expect = e-140
Identities = 109/284 (38%), Positives = 151/284 (53%), Gaps = 26/284 (9%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R +
Sbjct: 49 LIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY 108
Query: 63 GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNI 119
G + + LA++A+VPV NGLT+ HP Q++AD LT+ EH+ +VY GD NN+
Sbjct: 109 GQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNM 168
Query: 120 VHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIEITNDPKEVVQGADVV 176
+S L A++ P+ P+ V + R I +T D + V+GAD +
Sbjct: 169 GNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFI 228
Query: 177 YSDVWASMGQKEEA-AYRKQAFQGFQVDEFLMKLAG-PKAYFMHCLPA------------ 222
Y+DVW SMG+ +E A R + +QV+ +M+L G P+ F+HCLPA
Sbjct: 229 YTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKM 288
Query: 223 ------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 289 AEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLS 332
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* Length = 324 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-135
Identities = 75/287 (26%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAAR 48
+ MIF S+RTR+S + LG + I L + + K E +A
Sbjct: 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIP 98
Query: 49 VLCRYNDIIMARVF----------GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
V+ Y DII R F I + + PV + HP Q AD +TI
Sbjct: 99 VMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITI 158
Query: 99 IEHVGRLEG-TKVVYVGDG----NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR 153
E+ + + + +S+ + + FV P+G+E D + V AR
Sbjct: 159 EEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNAR 218
Query: 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPK 213
+ D + +GAD +Y+ WA+ + + V + M +
Sbjct: 219 --------VEYDQMKAFEGADFIYAKNWAAYTGDNYGQ-ILSTDRNWTVGDRQMAVT-NN 268
Query: 214 AYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
AYFMHCLP R + VT+ VIE+P SIV P+A NR + ++ L
Sbjct: 269 AYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLE 315
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} Length = 418 | Back alignment and structure |
|---|
Score = 369 bits (950), Expect = e-128
Identities = 75/313 (23%), Positives = 116/313 (37%), Gaps = 55/313 (17%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARV- 61
+F S RTR SF + +LLG L Q+ E R+ A ++ DII R
Sbjct: 65 SLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIGIRDD 124
Query: 62 --------FGHQDILDLAKF-------ATVPVINGLTDYNHPCQIMADALTIIEHVG--- 103
+ H+ + + ++N D +HP Q MADAL +I G
Sbjct: 125 MYIGKGNAYMHEVSESVQEGYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEFGGIE 184
Query: 104 RLEGTKVVYV-------GDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156
L+G KV G ++ + + + + V A P+G+E E E A+K
Sbjct: 185 NLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNA 244
Query: 157 I---SKIEITNDPKEVVQGADVVYSDVWASMGQKE-------------------EAAYRK 194
TN E + ADVVY WA E E +
Sbjct: 245 AEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQN 304
Query: 195 QAFQGFQVDEFLMKLAG-PKAYFMHCLPA------ERGVEVTEGVIEAPYSIVFPQAENR 247
+ + ++ E LMK KA +MHCLPA EV V + ++ +A +
Sbjct: 305 KKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYK 364
Query: 248 MHAQNAIMLHALG 260
+ A++ +
Sbjct: 365 PYVIAAMIFLSKV 377
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} Length = 399 | Back alignment and structure |
|---|
Score = 364 bits (937), Expect = e-127
Identities = 70/313 (22%), Positives = 112/313 (35%), Gaps = 55/313 (17%)
Query: 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF 62
+F S RTR S+ + +LLG L Q+ E R+ A ++ D I R
Sbjct: 68 SVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDD 127
Query: 63 GH------------QDILDLAKFATVP----VINGLTDYNHPCQIMADALTIIEHVGRLE 106
+ + D K +P ++N D +HP Q MAD + EH G LE
Sbjct: 128 MYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLE 187
Query: 107 GTKVVYV----------GDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156
K + G ++ + + + A P+G++ + VE A+
Sbjct: 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNA 247
Query: 157 I---SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYR-------------------K 194
+E + AD+VY WA EE
Sbjct: 248 KASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQN 307
Query: 195 QAFQGFQVDEFLMKLAG-PKAYFMHCLPA------ERGVEVTEGVIEAPYSIVFPQAENR 247
+ + E +M+L +A +MHCLPA + EVTEGV E + +A +
Sbjct: 308 AQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWK 367
Query: 248 MHAQNAIMLHALG 260
+ A++L
Sbjct: 368 PYIIAAMILSRKY 380
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Length = 308 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-40
Identities = 82/281 (29%), Positives = 127/281 (45%), Gaps = 40/281 (14%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFE+ LGG I + K E RD + + +Y D+I+
Sbjct: 47 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVI 106
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H A+ A VPVIN D HP Q + D TI + GR++G K+ +G
Sbjct: 107 R---HPKEGAARLAAEVAEVPVINA-GDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLG 162
Query: 115 DGNN--IVHS--WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVV 170
D VHS L + + + P+ + VE+ R+ G+ K+ T ++V+
Sbjct: 163 DLKYGRTVHSLAEALTFYDVELYLI--SPELLRMPRHIVEELREKGM-KVVETTTLEDVI 219
Query: 171 QGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224
DV+Y + QKE E Y K +QV+ +++ A + MH LP R
Sbjct: 220 GKLDVLY------VTRIQKERFPDEQEYLK-VKGSYQVNLKVLEKAKDELRIMHPLP--R 270
Query: 225 GVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALGL 261
E+ V ++I F Q N RM A++ LG+
Sbjct: 271 VDEIHPEVDNTKHAIYFRQVFNGVPVRM----ALLALVLGV 307
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* Length = 299 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-39
Identities = 71/281 (25%), Positives = 114/281 (40%), Gaps = 44/281 (15%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I G + + K E D R+L Y+D I+
Sbjct: 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 100
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H+ ++ + +PVIN D + HP Q + D TI +H ++G +G
Sbjct: 101 R---HKYDGASRFASEISDIPVINA-GDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLG 156
Query: 115 DGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D V+S +L + + P+ KE +++ ++ +P EV
Sbjct: 157 DLKYARTVNSLLRILTRFRPKLVYLI--SPQLLRARKEILDELN----YPVKEVENPFEV 210
Query: 170 VQGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223
+ DV+Y + QKE E Y K + V L + +H LP
Sbjct: 211 INEVDVLY------VTRIQKERFVDEMEYEK-IKGSYIVSLDLANKMKKDSIILHPLP-- 261
Query: 224 RGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
R E+ V + + F QA RM +I+ G
Sbjct: 262 RVNEIDRKVDKTTKAKYFEQASYGVPVRM----SILTKIYG 298
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A Length = 306 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-38
Identities = 77/277 (27%), Positives = 120/277 (43%), Gaps = 35/277 (12%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFET LGG I + + K E D RV+ Y DII+
Sbjct: 43 LATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVL 102
Query: 60 RVFGHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVG 114
R H ++++ VP+IN D HP Q + D TI+ +GR++G K+ +VG
Sbjct: 103 R---HPSEGAARLASEYSQVPIINA-GDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVG 158
Query: 115 DGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169
D VHS + L + +FV PK K+ +E + I K ++
Sbjct: 159 DLKYGRTVHSLVYALSLFENVEMYFV--SPKELRLPKDIIEDLKAKNI-KFYEKESLDDL 215
Query: 170 VQGADVVYSDVWASMG--QKE----EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223
DV+Y + QKE Y K +++ + G K MH LP
Sbjct: 216 DDDIDVLY------VTRIQKERFPDPNEYEK-VKGSYKIK--REYVEGKKFIIMHPLP-- 264
Query: 224 RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + P + F Q+ + + AI+ +
Sbjct: 265 RVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIE 301
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Length = 310 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-36
Identities = 74/282 (26%), Positives = 108/282 (38%), Gaps = 42/282 (14%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ--MGKREETRDAARVLCRYNDIIM 58
++ F + S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQD---ILDLAKFAT-VPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVY 112
R H +F+ VPV+N D HP Q + D TI E GRL+ V
Sbjct: 104 MR---HPQEGAARLATEFSGNVPVLNA-GDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM 159
Query: 113 VGDGNN--IVHS--WLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
VGD VHS L F+F+ P + ++ + GI + + +
Sbjct: 160 VGDLKYGRTVHSLTQALAKFDGNRFYFI--APDALAMPQYILDMLDEKGI-AWSLHSSIE 216
Query: 168 EVVQGADVVYSDVWASMG--QKE---EAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222
EV+ D++Y M QKE + Y F + + A +H LP
Sbjct: 217 EVMAEVDILY------MTRVQKERLDPSEYAN-VKAQFVLRASDLHNAKANMKVLHPLP- 268
Query: 223 ERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
R E+ V + P++ F QA N R A++ L
Sbjct: 269 -RVDEIATDVDKTPHAWYFQQAGNGIFARQ----ALLALVLN 305
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A Length = 304 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 70/283 (24%), Positives = 109/283 (38%), Gaps = 60/283 (21%)
Query: 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVF 62
+F +PS RTR SFE LG + + L + K E D R L D+ + R
Sbjct: 42 LFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIR-- 99
Query: 63 GHQD---ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
H + +L +P++N D HP Q + D +TI E +G V GD
Sbjct: 100 -HSEDEYYEELVSQVNIPILNA-GDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGD-- 155
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS +L A V+ P ++ ++ T
Sbjct: 156 -IKHSRVARSNAEVLTRLGARVL----FSG-PSEWQDEENTF-----------GTYVSMD 198
Query: 168 EVVQGADVVYSDVWASMG---QKE--EAAYRKQA-FQGFQVDEFLMKLAGPKAYFMHCLP 221
E V+ +DVV M Q E ++A ++ + + + A MH P
Sbjct: 199 EAVESSDVV-------MLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAP 251
Query: 222 AERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIMLHALG 260
RGVE+ + ++E+ S +F Q +N RM A++ AL
Sbjct: 252 VNRGVEIDDSLVESEKSRIFKQMKNGVFIRM----AVIQRALQ 290
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} Length = 291 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 7e-21
Identities = 71/284 (25%), Positives = 111/284 (39%), Gaps = 71/284 (25%)
Query: 5 FAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFG 63
F++PS RTR+SFE LG + + K E D + D ++ R
Sbjct: 41 FSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFR--- 97
Query: 64 HQD----ILDLAKFATVPVINGLTD--YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 117
++ K + ++N D + HP Q + D TI EH G ++ +V+YVGD
Sbjct: 98 VPFVFFPYKEIVKSLNLRLVNA-GDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGD-- 154
Query: 118 NIVHS-------WLLM---ASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPK 167
I HS LL A + VC PK P VE K+++ +D
Sbjct: 155 -IKHSRVFRSGAPLLNMFGAKI----GVCG-PKTLIP--RDVEV------FKVDVFDDVD 200
Query: 168 EVVQGADVVYSDVWASMG---QKE---------EAAYRKQAFQGFQVDEFLMKLAGPKAY 215
+ + ADVV + QKE E++Y KQ F + + +
Sbjct: 201 KGIDWADVV-------IWLRLQKERQKENYIPSESSYFKQ----FGLTKERFEKV---KL 246
Query: 216 FMHCLPAERGVEVTEGVIEAPYSIVFPQAEN----RMHAQNAIM 255
+MH P R V++ ++ S++ Q +N R AI
Sbjct: 247 YMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRK----AIY 286
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 36/249 (14%), Positives = 68/249 (27%), Gaps = 67/249 (26%)
Query: 37 MGKREETRDAAR---VLCRYNDII----MARVFGHQDILD-LAKFATVPVINGLTDYNHP 88
GK D V C+ + I + + +L+ L K N + +H
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 89 CQIMADALTIIEHVGRLEGTKVVY-----VGDGNNIVHSWLLMASVIPFHFVC------- 136
I +I + RL +K Y V N+ ++ A F+ C
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKP-YENCLLVLL--NVQNAKAWNA----FNLSCKILLTTR 273
Query: 137 -------------------ACPKGFEPDKETVEK-ARKAGISKIEITNDPKEVVQGADVV 176
PD E + ++ P+EV+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDL---PREVLTTNPRR 329
Query: 177 YSDVWASMGQKEEAA----YRKQAFQGFQ--VDEFLMKLAGP---KAYFMHC--LPAERG 225
S + S+ ++ A ++ ++ L L P + F P
Sbjct: 330 LSIIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPP--S 384
Query: 226 VEVTEGVIE 234
+ ++
Sbjct: 385 AHIPTILLS 393
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 261 | |||
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 100.0 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 100.0 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 100.0 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 100.0 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 100.0 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 100.0 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 100.0 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 100.0 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 100.0 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 100.0 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 100.0 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 100.0 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 100.0 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 100.0 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 100.0 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 100.0 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 100.0 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 100.0 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 100.0 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 100.0 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 100.0 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 100.0 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 100.0 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 100.0 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 100.0 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 100.0 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 100.0 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 100.0 | |
| 3kzn_A | 359 | Aotcase, N-acetylornithine carbamoyltransferase; t | 100.0 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.54 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.8 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.64 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.6 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.4 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.33 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.3 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.18 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.15 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.12 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.09 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.08 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.02 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.97 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.91 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.91 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.87 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 96.86 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.81 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 96.8 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 96.77 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 96.76 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.7 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.65 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.64 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.55 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.52 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.52 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.49 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.48 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 96.39 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.38 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 96.37 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.37 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 96.33 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 96.32 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.1 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 95.87 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.78 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 95.74 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 95.65 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.59 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.57 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 95.48 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.47 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.3 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 94.93 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.82 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.66 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.56 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.48 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 94.47 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.37 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.21 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 94.17 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.0 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.79 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 93.73 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.65 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 93.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 93.57 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.56 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.47 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.31 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 93.09 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 92.86 | |
| 3auf_A | 229 | Glycinamide ribonucleotide transformylase 1; struc | 92.85 | |
| 2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase | 92.69 | |
| 3aek_B | 525 | Light-independent protochlorophyllide reductase S; | 92.66 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.62 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 92.57 | |
| 1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator t | 92.57 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.54 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 92.54 | |
| 2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossm | 92.34 | |
| 3av3_A | 212 | Phosphoribosylglycinamide formyltransferase; struc | 92.13 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 92.01 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 92.01 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 92.01 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 91.83 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 91.45 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 91.4 | |
| 3tqr_A | 215 | Phosphoribosylglycinamide formyltransferase; purin | 91.39 | |
| 3q0i_A | 318 | Methionyl-tRNA formyltransferase; structural genom | 91.37 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 91.07 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 91.0 | |
| 1jkx_A | 212 | GART;, phosphoribosylglycinamide formyltransferase | 90.93 | |
| 2q5c_A | 196 | NTRC family transcriptional regulator; structural | 90.89 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 90.81 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 90.73 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 90.62 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 90.52 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 90.48 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 90.02 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.95 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 89.83 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 89.78 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 89.64 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 89.57 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 89.52 | |
| 3tqq_A | 314 | Methionyl-tRNA formyltransferase; protein synthesi | 89.44 | |
| 3p9x_A | 211 | Phosphoribosylglycinamide formyltransferase; struc | 89.43 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 89.38 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 89.34 | |
| 2pju_A | 225 | Propionate catabolism operon regulatory protein; s | 89.29 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 89.24 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 89.05 | |
| 3dcm_X | 192 | AdoMet, uncharacterized protein TM_1570; trefoil k | 88.98 | |
| 2xdq_B | 511 | Light-independent protochlorophyllide reductase S; | 88.92 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 88.91 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 88.88 | |
| 1mio_A | 533 | Nitrogenase molybdenum iron protein (alpha chain); | 88.8 | |
| 3rfo_A | 317 | Methionyl-tRNA formyltransferase; structural genom | 88.79 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 88.78 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 88.75 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 88.44 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 88.42 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.35 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 88.27 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 88.25 | |
| 1qgu_B | 519 | Protein (nitrogenase molybdenum iron protein); bio | 88.24 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 88.15 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 88.15 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 88.15 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 88.13 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 88.04 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 87.89 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 87.85 | |
| 3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransf | 87.82 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 87.8 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 87.74 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 87.73 | |
| 3u7q_B | 523 | Nitrogenase molybdenum-iron protein beta chain; mu | 87.72 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 87.7 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 87.67 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 87.56 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 87.35 | |
| 2bln_A | 305 | Protein YFBG; transferase, formyltransferase, L-AR | 86.88 | |
| 1meo_A | 209 | Phosophoribosylglycinamide formyltransferase; puri | 86.87 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 86.69 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 86.53 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 86.37 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 86.08 | |
| 4ds3_A | 209 | Phosphoribosylglycinamide formyltransferase; struc | 85.99 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 85.98 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 85.96 | |
| 1mio_B | 458 | Nitrogenase molybdenum iron protein (beta chain); | 85.79 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 85.72 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 85.59 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 85.55 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 84.97 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 84.87 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 84.65 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 84.61 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 84.6 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 84.55 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 84.28 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 84.22 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 84.2 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 83.74 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 83.36 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 83.24 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 82.97 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 82.96 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 82.54 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 82.41 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 82.35 | |
| 3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; struc | 82.33 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 82.31 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 81.91 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 81.72 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 81.42 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 81.35 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 81.3 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 81.28 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 81.28 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 81.26 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 81.23 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 80.94 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 80.68 | |
| 3pdi_A | 483 | Nitrogenase MOFE cofactor biosynthesis protein NI; | 80.35 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 80.28 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 80.21 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 80.1 |
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-95 Score=663.78 Aligned_cols=259 Identities=37% Similarity=0.653 Sum_probs=249.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 39 la~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVIN 118 (307)
T 3tpf_A 39 LAMIFEKNSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPVIN 118 (307)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCcchHHhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCC-CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----Hh
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLE-GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KA 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~-~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~ 155 (261)
|+++++||||+|+|+|||+|++|+++ |+||+||||.+||+|||+.+++++|++|++++|++|.|+++++++++ +.
T Consensus 119 ag~~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 198 (307)
T 3tpf_A 119 ALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALIS 198 (307)
T ss_dssp EECSSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHc
Confidence 98889999999999999999999999 99999999999999999999999999999999999999998877666 56
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
| .++++++|+++|+++|||||||+|.||+++++.+++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++
T Consensus 199 g-~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~ 277 (307)
T 3tpf_A 199 G-AKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK 277 (307)
T ss_dssp T-CEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHHH
T ss_pred C-CeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCC
Confidence 7 589999999999999999999999999987766777889999999999999999999999999999999999999999
Q ss_pred CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 236 PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 236 ~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+|+||+||+||+|+|||||+++||
T Consensus 278 p~s~if~QaeNrl~~r~AlL~~ll~ 302 (307)
T 3tpf_A 278 HADVIFEEARNRLYVVKALLCFLDN 302 (307)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHcCHHHHHHHHHHHhh
Confidence 9999999999999999999999987
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-95 Score=663.57 Aligned_cols=259 Identities=53% Similarity=0.917 Sum_probs=248.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 la~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVIN 128 (315)
T 1pvv_A 49 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVIN 128 (315)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHHHhCCCCEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|+++++++|++|.|+++++++++ +.|
T Consensus 129 a~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g 208 (315)
T 1pvv_A 129 GLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESG 208 (315)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcC
Confidence 9888999999999999999999999999999999999999999999999999999999999999998877665 667
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+++++++|++||+++|||||||+|.+|+++++..++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++|
T Consensus 209 -~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p 287 (315)
T 1pvv_A 209 -GSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSP 287 (315)
T ss_dssp -CEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTST
T ss_pred -CeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHHHhCCC
Confidence 5899999999999999999999999999865555567889999999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 288 ~s~vf~QaeNrl~~r~AlL~~ll~ 311 (315)
T 1pvv_A 288 NSVVWDQAENRLHAQKAVLALVMG 311 (315)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhhCHHHHHHHHHHHhc
Confidence 999999999999999999999986
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-95 Score=661.31 Aligned_cols=260 Identities=43% Similarity=0.737 Sum_probs=247.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 42 l~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVIN 121 (307)
T 2i6u_A 42 VAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMASVATVPVIN 121 (307)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHhhCCCCEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----Hh
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KA 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~ 155 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|+++++++|++|.|+++++++++ +.
T Consensus 122 a~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 201 (307)
T 2i6u_A 122 ALSDEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDT 201 (307)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCccHHHHHHHHHHHHhCCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998 9999999999999999999999999999998877665 66
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
| +++++++|++||+++|||||||+|.+|+|+++.+++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++
T Consensus 202 G-~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~ 280 (307)
T 2i6u_A 202 G-ASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDG 280 (307)
T ss_dssp T-CCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred C-CeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHhHhCC
Confidence 7 579999999999999999999999999986554445678899999999999999999999999999999999999999
Q ss_pred CCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 236 PYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 236 ~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
|+|+||+||+||+|+|||||+++||.
T Consensus 281 p~s~if~QaeN~l~~r~AlL~~ll~~ 306 (307)
T 2i6u_A 281 PASAVWDEAENRLHAQKALLVWLLER 306 (307)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHhcCHHHHHHHHHHHhcc
Confidence 99999999999999999999999873
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-94 Score=661.48 Aligned_cols=259 Identities=45% Similarity=0.792 Sum_probs=232.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 51 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~~~vPVIN 130 (323)
T 3gd5_A 51 LGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVIN 130 (323)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHCSCEEE
T ss_pred EEEEecCCCcchHhhHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g 156 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|++|++++|++|.|++++++++++ .|
T Consensus 131 ag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g 210 (323)
T 3gd5_A 131 ALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTG 210 (323)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC
Confidence 98899999999999999999999999999999999999999999999999999999999999999998877653 56
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
.++++++|++||+++|||||||+|.+|+++++.+++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++|
T Consensus 211 -~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~eV~d~p 289 (323)
T 3gd5_A 211 -AEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGP 289 (323)
T ss_dssp -CCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHST
T ss_pred -CeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHHHhCCC
Confidence 5899999999999999999999999999876555677889999999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 290 ~S~if~QaeNrl~~r~AlL~~ll~ 313 (323)
T 3gd5_A 290 RSRIWDEAENRLHAQKAVLAALMG 313 (323)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999999987
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-95 Score=662.46 Aligned_cols=257 Identities=45% Similarity=0.771 Sum_probs=236.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|++++|||||
T Consensus 48 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVIN 127 (309)
T 4f2g_A 48 LAMIFEKSSTRTRLSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQDIIQRFAENSRVPVIN 127 (309)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHHHHHHHHHTCSSCEEE
T ss_pred EEEEecCCChhhHhhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeE
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKI 160 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i 160 (261)
|+|+++||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|++|++++|++|.|+++++ +++.| .++
T Consensus 128 ag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~--~~~~g-~~v 204 (309)
T 4f2g_A 128 GLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLV--DAESA-PFY 204 (309)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGS--CGGGG-GGE
T ss_pred CCCCccCcHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHH--HHHcC-CeE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 23556 579
Q ss_pred EEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcch
Q 024871 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~ 240 (261)
++++|++||+++|||||||+|.||+|+++.+++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++|+|+|
T Consensus 205 ~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~p~s~i 284 (309)
T 4f2g_A 205 QVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284 (309)
T ss_dssp EECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHHHHTSTTBCH
T ss_pred EEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHHHhCCCcchH
Confidence 99999999999999999999999998765566778899999999999999999999999999999999999999999999
Q ss_pred HhHHhccHHHHHHHHHHHhc
Q 024871 241 FPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 241 ~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+||+|+|||||+++||
T Consensus 285 f~QaeN~l~~r~AlL~~ll~ 304 (309)
T 4f2g_A 285 WDEAENRLHVQKALMEFLLL 304 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHh
Confidence 99999999999999999986
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-94 Score=658.12 Aligned_cols=258 Identities=43% Similarity=0.734 Sum_probs=239.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+|+++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 61 la~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~~~vPVIN 140 (325)
T 1vlv_A 61 LAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYN 140 (325)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHCSCEEE
T ss_pred EEEEeccCCcchHHHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----Hh
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KA 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~ 155 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|++|++++|++|.|+++++++++ +.
T Consensus 141 a~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~ 220 (325)
T 1vlv_A 141 GLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKET 220 (325)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 998999999999999999999999999999999998 8999999999999999999999999999998877665 66
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCCCCccccccccc
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
| +++++++|++||+++|||||||+|.+|+++++.+++.+++.+||||+++|+.+ ++|++||||||+|||+||+++|++
T Consensus 221 G-~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~eV~d 299 (325)
T 1vlv_A 221 D-GSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIE 299 (325)
T ss_dssp C-CEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHT
T ss_pred C-CeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHHHhC
Confidence 7 58999999999999999999999999998665556678889999999999999 999999999999999999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHh
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
+|+|+||+||+||+|+|||||+++|
T Consensus 300 ~p~S~if~QaeNrl~~rmAlL~~ll 324 (325)
T 1vlv_A 300 GKQSRVWDEAENRKHTIKAVMIATL 324 (325)
T ss_dssp STTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHhccHHHHHHHHHHHh
Confidence 9999999999999999999999886
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-94 Score=660.92 Aligned_cols=258 Identities=47% Similarity=0.802 Sum_probs=237.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|++++|||||
T Consensus 73 la~lF~epSTRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~~~~vPVIN 152 (340)
T 4ep1_A 73 LGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVIN 152 (340)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++.+||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|++|++++|++|.|++++++.++ +.|
T Consensus 153 ag~~~~HPtQaLaDl~TI~E~~G~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G 232 (340)
T 4ep1_A 153 GLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETG 232 (340)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC
Confidence 9888999999999999999999999999999999999999999999999999999999999999999887765 567
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+++++++|++||+++|||||||+|.+|+++++ .++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++|
T Consensus 233 -~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~-~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~p 310 (340)
T 4ep1_A 233 -AEIEILHNPELAVNEADFIYTDVWMSMGQEGE-EEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGP 310 (340)
T ss_dssp -CCEEEESCHHHHHTTCSEEEECCC------CH-HHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHTST
T ss_pred -CeEEEECCHHHHhCCCCEEEecCccCCCCCch-HHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCCC
Confidence 58999999999999999999999999998766 5677888999999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 311 ~S~if~QaeNrl~~rmAlL~~ll~ 334 (340)
T 4ep1_A 311 QSIVFEQAGNRLHAQKALLVSLFK 334 (340)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999997
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-94 Score=654.01 Aligned_cols=254 Identities=46% Similarity=0.771 Sum_probs=237.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.|+++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 48 ~~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVIN 127 (301)
T 2ef0_A 48 LALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALARHAKVPVVN 127 (301)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEeccCCcchHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHHHHCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeE
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKI 160 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i 160 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|+++++++|++|.|+++++++++ +
T Consensus 128 a~~~~~HPtQaLaDl~Ti~e~~g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~------~ 201 (301)
T 2ef0_A 128 ALSDRAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRAN------A 201 (301)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHT------C
T ss_pred CCCCccCchHHHHHHHHHHHHhCCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhce------e
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776552 6
Q ss_pred EEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcch
Q 024871 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIV 240 (261)
Q Consensus 161 ~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~ 240 (261)
++++|+++|+++|||||||+|.+|+|+++..++.+++.+||||.++|+.+++|++||||||+|||+||+++|+++|+|+|
T Consensus 202 ~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV~d~p~s~i 281 (301)
T 2ef0_A 202 FFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRV 281 (301)
T ss_dssp EEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCH
T ss_pred EEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHHhCCCcchH
Confidence 78999999999999999999999998766556678899999999999999999999999999999999999999999999
Q ss_pred HhHHhccHHHHHHHHHHHhc
Q 024871 241 FPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 241 ~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+||+|+|||||+++||
T Consensus 282 f~QaeN~l~~rmAlL~~ll~ 301 (301)
T 2ef0_A 282 FDQAENRLHTAKAVLLTLLK 301 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHhC
Confidence 99999999999999999986
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-93 Score=657.46 Aligned_cols=258 Identities=44% Similarity=0.743 Sum_probs=246.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||.||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 66 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~vPVIN 145 (339)
T 4a8t_A 66 LGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVIN 145 (339)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHh--C-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHV--G-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~--g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++.+||||+|+|+|||+|++ | +++|+||+||||++||+|||+.+++++|++|++++|++|.|+++++++++
T Consensus 146 ag~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~ 225 (339)
T 4a8t_A 146 GMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCE 225 (339)
T ss_dssp CCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999 8 89999999999999999999999999999999999999999999887765
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHH-HHHHhhhcC-CcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEA-AYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~-~~~~~~~~~-y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
+.| .++++++|++ |+++|||||||+|.||||+++. +++.+++.+ ||||.++|+.+++|++||||||+|||+||+++
T Consensus 226 ~~g-~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~e 303 (339)
T 4a8t_A 226 VSG-GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE 303 (339)
T ss_dssp HHC-CEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred HcC-CEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence 456 5899999999 9999999999999999987765 566777887 99999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||+++||
T Consensus 304 V~d~p~S~if~QaeNrl~~r~AlL~~ll~ 332 (339)
T 4a8t_A 304 VIDGKNSICFDEAENRLTSIRGLLVYLMN 332 (339)
T ss_dssp HHTSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999986
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-93 Score=655.41 Aligned_cols=260 Identities=42% Similarity=0.669 Sum_probs=248.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 47 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~~~vPVIN 126 (333)
T 1duv_G 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYASVPVWN 126 (333)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHSSCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHhCCCCeEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHH-hC-CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEH-VG-RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~-~g-~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++++||||+|+|+|||+|+ +| .++|+||+||||+ +||+|||+.+++++|++|++++|++|.|+++++++++
T Consensus 127 a~~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~ 206 (333)
T 1duv_G 127 GLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQ 206 (333)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHH
Confidence 999999999999999999999 99 9999999999998 8999999999999999999999999999998877665
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC--------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE-------- 223 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~-------- 223 (261)
+.| +++++++|+++|+++|||||||+|.|||++++ ..++.+++.+||||.++|+.+ ++|++||||||++
T Consensus 207 ~~G-~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~ 285 (333)
T 1duv_G 207 QNG-GNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLG 285 (333)
T ss_dssp HTT-CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHH
T ss_pred HcC-CeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCCCCccccccc
Confidence 566 58999999999999999999999999998665 556778899999999999999 9999999999999
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 286 ~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~~ 333 (333)
T 1duv_G 286 KKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK 333 (333)
T ss_dssp HHHHHHTTCCSBSSBBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhccccCCCCceeCHHHhCCCcchHHHHHhccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999974
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-93 Score=656.51 Aligned_cols=259 Identities=44% Similarity=0.710 Sum_probs=248.5
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 48 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVIN 127 (335)
T 1dxh_A 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFN 127 (335)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHSSSCEEE
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHHhCCCCEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----H
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----K 154 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~ 154 (261)
|+++++||||+|+|+|||+|++| .++|+||+||||+ +||+|||+.+++++|++|++++|++|.|+++++++++ +
T Consensus 128 a~~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~ 207 (335)
T 1dxh_A 128 GLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEE 207 (335)
T ss_dssp EECSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999998 8999999999999999999999999999998877665 6
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhc-CCCcEEeeCCCCC---------
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLA-GPKAYFMHCLPAE--------- 223 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a-~~~~~~mH~lP~~--------- 223 (261)
.| +++++++|+++|+++|||||||+|.|||++++ ..++.+++.+||||.++|+.+ ++|++||||||++
T Consensus 208 ~G-~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~~h~~~t~~~~ 286 (335)
T 1dxh_A 208 SG-AKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGK 286 (335)
T ss_dssp HT-CEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHHH
T ss_pred cC-CeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCCCCccccccch
Confidence 67 58999999999999999999999999998665 456678899999999999999 9999999999999
Q ss_pred ----------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 224 ----------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 224 ----------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 287 ~~~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~ 333 (335)
T 1dxh_A 287 QIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLA 333 (335)
T ss_dssp HHHHHCGGGGGBSSBBHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcccCCCCcEecHHHhCCccchHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999987
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-93 Score=650.85 Aligned_cols=258 Identities=46% Similarity=0.756 Sum_probs=245.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|+++++||||
T Consensus 49 l~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVIN 128 (321)
T 1oth_A 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIIN 128 (321)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAG 156 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g 156 (261)
|+++++||||+|+|+|||+|++|+++|+||+||||++||+|||+.+++++|++|++++|++|.|+++++++++ +.|
T Consensus 129 a~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G 208 (321)
T 1oth_A 129 GLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENG 208 (321)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887665 456
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
+.+++++|+++|+++|||||||+|.+|+++++...+.+++.+||||.++|+.+++|++||||||++| +||+++|+++|
T Consensus 209 -~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP~~r-~EI~~eV~d~p 286 (321)
T 1oth_A 209 -TKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKP-EEVDDEVFYSP 286 (321)
T ss_dssp -CCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCT-TTBCHHHHTST
T ss_pred -CeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCCCCC-cccCHHHhCCc
Confidence 5799999999999999999999999999765544556678999999999999999999999999988 99999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++||
T Consensus 287 ~S~if~QaeNrl~~rmAlL~~ll~ 310 (321)
T 1oth_A 287 RSLVFPEAENRKWTIMAVMVSLLT 310 (321)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHhcHHHHHHHHHHHHh
Confidence 999999999999999999999986
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-93 Score=656.23 Aligned_cols=258 Identities=38% Similarity=0.659 Sum_probs=232.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPV 78 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPV 78 (261)
++++|||||||||+|||+|+++|||++++ +++ +||++||||++||+|+||+|+|+||+||+.++.++++|++++|||
T Consensus 47 la~lF~e~STRTR~SFE~A~~~LGg~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPV 125 (328)
T 3grf_A 47 LLAFFAKPSLRTRVSLETAMTRLGGHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVPC 125 (328)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHTCEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCE
T ss_pred EEEEecCCCchHHHHHHHHHHHCCCeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCChhHHHHHHHhCCCCE
Confidence 58999999999999999999999999999 999 999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChhHHHHHHHHHHHHhC-------CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCC--CCHHH
Q 024871 79 INGLTDYNHPCQIMADALTIIEHVG-------RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFE--PDKET 148 (261)
Q Consensus 79 INa~~~~~HPtQ~L~Dl~Ti~e~~g-------~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~--~~~~~ 148 (261)
|||+++++||||+|+|+|||+|++| +++|+||+||||+ +||+|||+.+++++|++|++++|++|. |++++
T Consensus 126 INag~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~ 205 (328)
T 3grf_A 126 INALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEV 205 (328)
T ss_dssp EESSCSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHH
T ss_pred EeCCCCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHH
Confidence 9998889999999999999999999 8999999999998 899999999999999999999999999 99998
Q ss_pred HHHHHH------hCCCeEEEEcCHHHHhCCCCEEEEecccCcc-hhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 149 VEKARK------AGISKIEITNDPKEVVQGADVVYSDVWASMG-QKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 149 ~~~~~~------~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~-~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
++.+++ .| .++++++|+++|+++|||||||+|.||+ |+|+++++.+++.+||||.++|+.+++|++||||||
T Consensus 206 ~~~~~~~~~~~~~g-~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lP 284 (328)
T 3grf_A 206 IDECEEIIAKHGTG-GSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLP 284 (328)
T ss_dssp HHHHHHHHHHHTCC-CEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHHHHHHhhccCC-CeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCC
Confidence 877765 35 6899999999999999999999999999 988876778889999999999999999999999999
Q ss_pred CCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 222 ~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|||+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 285 a~Rg~EI~~eV~d~p~S~if~QaeNrl~~r~AlL~~ll~ 323 (328)
T 3grf_A 285 ATRGEEQTASVIDGPKSVCYDEAGNRLHSAMAVLDFFLH 323 (328)
T ss_dssp CCTTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCccCHHHhCCCchhHHHHHhhCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-93 Score=657.77 Aligned_cols=258 Identities=44% Similarity=0.743 Sum_probs=247.0
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||.||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 44 la~lF~epSTRTR~SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~~~~vPVIN 123 (355)
T 4a8p_A 44 LGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVIN 123 (355)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCChhhHhhHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHh--C-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHV--G-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~--g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+++++||||+|+|+|||+|++ | +++|+||+||||++||+|||+.+++++|++|++++|++|.|+++++++++
T Consensus 124 ag~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~ 203 (355)
T 4a8p_A 124 GMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCE 203 (355)
T ss_dssp CCCSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHH
Confidence 9999999999999999999999 8 89999999999999999999999999999999999999999999887765
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHH-HHHHhhhcC-CcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEA-AYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~-~~~~~~~~~-y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
+.| .++++++|++ |+++|||||||+|.||||+++. .++.+++.+ ||||.++|+.+++|++||||||+|||+||+++
T Consensus 204 ~~G-~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e 281 (355)
T 4a8p_A 204 VSG-GSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE 281 (355)
T ss_dssp HHS-CEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred HcC-CeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence 456 5899999999 9999999999999999987764 566777887 99999999999999999999999999999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||+++||
T Consensus 282 V~d~p~S~if~QaeNrl~~r~AlL~~ll~ 310 (355)
T 4a8p_A 282 VIDGKNSICFDEAENRLTSIRGLLVYLMN 310 (355)
T ss_dssp HHTSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999986
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-92 Score=657.11 Aligned_cols=259 Identities=40% Similarity=0.639 Sum_probs=248.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 74 va~lF~e~STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVIN 153 (365)
T 4amu_A 74 IAILFQKDSTRTRCAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALVKYSGVPVWN 153 (365)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHHCSCEEE
T ss_pred EEEEecCCCchHHHHHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCChhHHHHHHHhCCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCC--CHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEP--DKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~--~~~~~~~~~---- 153 (261)
|+|+.+||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|++|++++|++|.| ++++++.++
T Consensus 154 a~~~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~ 233 (365)
T 4amu_A 154 GLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFK 233 (365)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSSCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 8999999999999999999999999999 998887654
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC--------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER-------- 224 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r-------- 224 (261)
+.| .++++++|+++|+++|||||||+|.||+++++ ..++.+++.+||||.++|+.+++|++||||||++|
T Consensus 234 ~~g-~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP~~R~~~t~~~~ 312 (365)
T 4amu_A 234 RNG-GSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPAFHDDHTSFSK 312 (365)
T ss_dssp HHS-CEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSCCCCSSCSHHHH
T ss_pred HcC-CEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCccccchhh
Confidence 456 58999999999999999999999999998776 56778899999999999999999999999999999
Q ss_pred ----------------CcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 225 ----------------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 225 ----------------g~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 313 ~~~~~~~~~~~~~~~~g~EIt~eV~d~p~S~if~QaeNrl~~~kAvL~~llg 364 (365)
T 4amu_A 313 EVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQAENRMHSIKAIILSTIG 364 (365)
T ss_dssp HHHHHSSSSCGGGGGSCCSBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccccccccCCCcEecHHHhCCCcchhHhHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-92 Score=652.61 Aligned_cols=258 Identities=42% Similarity=0.662 Sum_probs=247.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 70 la~lF~e~STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVIN 149 (359)
T 2w37_A 70 IALLFEKSSTRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARDSGVPVWN 149 (359)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHHHSSSCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHHhCCCCEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----Hh
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KA 155 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~ 155 (261)
|+++.+||||+|+|+|||+|++|.|+|+||+||||+ +||+|||+.+++++|++|++++|++|.|+++++++++ +.
T Consensus 150 a~~~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~ 229 (359)
T 2w37_A 150 GLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKS 229 (359)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHhCCcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998 8999999999999999999999999999998877665 66
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcC---CCcEEeeCCCCC---------
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG---PKAYFMHCLPAE--------- 223 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~---~~~~~mH~lP~~--------- 223 (261)
| +++++++|++||+++|||||||+|.||||+ +..++.+++.+||||.++|+.++ +|++||||||++
T Consensus 230 G-~~v~~~~d~~eav~~aDvvytd~w~smg~e-e~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~~h~~~t~~g~ 307 (359)
T 2w37_A 230 G-AKLVITDDLDEGLKGSNVVYTDVWVSMGES-NWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGK 307 (359)
T ss_dssp T-CCEEEESCHHHHHTTCSEEEECCSCCTTCT-THHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCCCCSSCSHHHH
T ss_pred C-CeEEEEeCHHHHhcCCCEEEEccccccccc-chHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCCCcccccccch
Confidence 7 579999999999999999999999999986 34566788999999999999999 999999999999
Q ss_pred --------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 224 --------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 224 --------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 308 ~~~~~~~~Rg~EIt~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~ 352 (359)
T 2w37_A 308 EIKEKYGITEMEVTDEVFTSKYARQFEEAENRMHSIKAMMAATLG 352 (359)
T ss_dssp HHHHHHCCCCCSBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhccCCCCceecHHHhCCCcchHHHHHhhhHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-91 Score=644.92 Aligned_cols=257 Identities=41% Similarity=0.604 Sum_probs=235.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
+++||||||||||+|||.||++|||++++++++++|++||||++||+||||+|+|+||+||+.++.++++|++++|||||
T Consensus 69 va~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~s~vPVIN 148 (353)
T 3sds_A 69 VAMMFSKRSTRTRVSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVIN 148 (353)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCchhHHHHHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChHHHHHHHhhCCCCEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCCC-------------CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHH
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGRL-------------EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKE 147 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~l-------------~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~ 147 (261)
|+++.+||||+|+|+|||+|+||.+ +|+||+||||++||+|||+.+++++|++|++++|++|+|+++
T Consensus 149 ag~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~ 228 (353)
T 3sds_A 149 ALCDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSH 228 (353)
T ss_dssp EECSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHH
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHH
Confidence 9888999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh------CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHh--cCCCcEEeeC
Q 024871 148 TVEKARKA------GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL--AGPKAYFMHC 219 (261)
Q Consensus 148 ~~~~~~~~------g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~--a~~~~~~mH~ 219 (261)
+++++++. | +.+++++|++||+++|||||||+|.||+++++..++.+++.+||||.++|+. +++|++||||
T Consensus 229 i~~~~~~~a~~~~~g-~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHc 307 (353)
T 3sds_A 229 IVELIQKAREGVQSP-GNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHC 307 (353)
T ss_dssp HHHHHHHHHTTCSSC-CCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEEC
T ss_pred HHHHHHHhhhhccCC-CeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECC
Confidence 98887764 4 5789999999999999999999999999876655677788999999999999 8999999999
Q ss_pred CCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 220 LPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 220 lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
||++| +||+++|+++|+|+||+||+||+|+|||||++++
T Consensus 308 LP~~~-~EI~~eV~d~p~S~if~QaeNrl~~rmAlL~~~l 346 (353)
T 3sds_A 308 LPRHP-EEVSDEVFYSERSLVFPEAENRLWAAISALEAFV 346 (353)
T ss_dssp SCCCT-TTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC-CeECHHHhCCCcchHHHHHhhcHHHHHHHHHHHH
Confidence 99986 8999999999999999999999999999999987
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-90 Score=628.93 Aligned_cols=255 Identities=28% Similarity=0.367 Sum_probs=239.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCC-cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD-IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~-s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||.||++|||+++++++.+ |+++||||++||+|+||+|+|+||+||+.++.++++|+++++|||
T Consensus 47 l~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVI 126 (308)
T 1ml4_A 47 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVI 126 (308)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTTHHHHHHHTCSSCEE
T ss_pred EEEEecCCCchHHHHHHHHHHHhCCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCChhHHHHHHHhCCCCEE
Confidence 5899999999999999999999999999998876 789999999999999999999999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||+ |+++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|++|++++|++|.|++++++++++.|
T Consensus 127 Nag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g 206 (308)
T 1ml4_A 127 NAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG 206 (308)
T ss_dssp EEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTT
T ss_pred eCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcC
Confidence 986 5999999999999999999999999999999998 5899999999999999999999999999999999999888
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccC--cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccccc
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWAS--MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~--~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
.++++++|+++|+++|||||||+|.+ +++++ ++..++.+||||+++|+.+++|++|||||| ||+||+++|++
T Consensus 207 -~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~---~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP--rg~EI~~eV~d 280 (308)
T 1ml4_A 207 -MKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQ---EYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDN 280 (308)
T ss_dssp -CCEEEESCTHHHHTTCSEEEECCCCGGGSSSHH---HHHTTTTCCCBCTTGGGGSCTTCEEECCSC--CSSSBCGGGGG
T ss_pred -CeEEEEcCHHHHhcCCCEEEECCccccccCCHH---HHHHHhcCcccCHHHHhhcCCCCEEECCCC--CCCeecHHHhC
Confidence 57999999999999999999999965 44432 234556799999999999999999999999 79999999999
Q ss_pred CCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 235 APYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 235 ~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
+|+|+||+||+||+|+|||||+++||.
T Consensus 281 ~p~s~if~QaeNrl~~r~AlL~~ll~~ 307 (308)
T 1ml4_A 281 TKHAIYFRQVFNGVPVRMALLALVLGV 307 (308)
T ss_dssp STTBCHHHHHHTHHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999873
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-90 Score=640.81 Aligned_cols=260 Identities=43% Similarity=0.670 Sum_probs=246.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+|+|+||+||+.++.++++|++++|||||
T Consensus 73 la~lF~epSTRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~la~~s~vPVIN 152 (358)
T 4h31_A 73 IALIFEKASTRTRCAFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELGAFAGVPVWN 152 (358)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHSSSCEEE
T ss_pred EEEEeCCCChhhHHHHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhHHHHhhhhccCceEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---- 153 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~---- 153 (261)
|+|+.+||||+|+|+|||+|++| .++|+||+||||+ +||+|||+.+++++|++|++++|++|.|++++++.++
T Consensus 153 G~g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~ 232 (358)
T 4h31_A 153 GLTDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAK 232 (358)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHH
T ss_pred CCCcCCCchHHHHHHHHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999987 6999999999998 7899999999999999999999999999999987765
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHH-HHHHHhhhcCCcccHHHHHh-cCCCcEEeeCCCCC--------
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEE-AAYRKQAFQGFQVDEFLMKL-AGPKAYFMHCLPAE-------- 223 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~-~~~~~~~~~~y~v~~~~~~~-a~~~~~~mH~lP~~-------- 223 (261)
+.| +++++++|++||+++|||||||+|.+|+++++ .+++.+++.+||||.++|+. ++++++||||||++
T Consensus 233 ~~g-~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~LP~~~n~~~~~~ 311 (358)
T 4h31_A 233 QTG-GKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLPAFHNDETTIG 311 (358)
T ss_dssp HHT-CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECSCCCCSSSSHHH
T ss_pred HcC-CcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCCCCCCCcccccc
Confidence 456 68999999999999999999999999987654 35677889999999999986 68999999999995
Q ss_pred ---------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 224 ---------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 224 ---------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
||+||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 312 ~~~~~~~~~RG~EIt~eV~d~~~S~if~QaeNrl~~r~AlL~~lLG~ 358 (358)
T 4h31_A 312 KQVADKFGMKGLEVTEEVFESEHSIVFDEAENRMHTIKAVMVATLGS 358 (358)
T ss_dssp HHHHHHTTCSCSSBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhccCCCceEECHHHhCCCccHHHHHHhhhHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999984
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-89 Score=622.74 Aligned_cols=252 Identities=27% Similarity=0.398 Sum_probs=237.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC-CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~-~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
+++||||||||||+|||.||++|||+++++++ ++||++||||++||+||||+|+|+||+||+.++.++++|++++||||
T Consensus 43 la~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~~~~vPVI 122 (306)
T 4ekn_B 43 LATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLASEYSQVPII 122 (306)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSSTTHHHHHHHHCSSCEE
T ss_pred EEEEEcCCChhHHhhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCChHHHHHHHHhCCCCEE
Confidence 58999999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
||+ |+++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++ |++|++++|++|+|++++++.+++.
T Consensus 123 Nag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~ 202 (306)
T 4ekn_B 123 NAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAK 202 (306)
T ss_dssp ESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHT
T ss_pred eCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHc
Confidence 995 6999999999999999999999999999999998 68999999999999 9999999999999999999999988
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEeccc--CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccc
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWA--SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~--~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~ 233 (261)
| .++++++|+++|+++||||||++|. +++++++ +.+.+.+||||.++|+. +|++|||||| ||+||+++|+
T Consensus 203 g-~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e---~~~~~~~y~v~~~~l~~--~~ai~mH~lP--Rg~EI~~eV~ 274 (306)
T 4ekn_B 203 N-IKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNE---YEKVKGSYKIKREYVEG--KKFIIMHPLP--RVDEIDYDVD 274 (306)
T ss_dssp T-CCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHH---HHHHHHHHCBCHHHHTT--CCCEEECCSC--CSSSBCGGGT
T ss_pred C-CEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHH---HHHhccCcEECHHHHcC--CCCEEECCCC--CCCeecHhHh
Confidence 8 5789999999999999999999995 4554332 34556789999999987 8999999999 8999999999
Q ss_pred cCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 234 EAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 234 ~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++|+|+||+||+||+|+|||||+++||
T Consensus 275 d~p~s~vf~QaeNrl~~r~AlL~~ll~ 301 (306)
T 4ekn_B 275 DLPQAKYFKQSFYGIPVRMAILKKLIE 301 (306)
T ss_dssp TSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHhcCHHHHHHHHHHHhc
Confidence 999999999999999999999999986
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-89 Score=621.46 Aligned_cols=252 Identities=25% Similarity=0.315 Sum_probs=230.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCC-cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD-IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~-s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||.||++|||+++++++.+ |+++||||++||+||||+|+|+||+||+.++.++++|+++++|||
T Consensus 41 ~~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~vPVI 120 (299)
T 1pg5_A 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVI 120 (299)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHHHHCSSCEE
T ss_pred EEEEecCCCcchHHhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHHhCCCCEE
Confidence 5899999999999999999999999999998766 789999999999999999999999999999999999999999999
Q ss_pred eC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 80 NG-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 80 Na-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
|| +|+++||||+|+|+|||+|++|+++|+||+||||+ +||+||++.+++++ |++|++++|++|+|++++ +++.
T Consensus 121 NaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~---~~~~ 197 (299)
T 1pg5_A 121 NAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEI---LDEL 197 (299)
T ss_dssp EEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHH---HTTC
T ss_pred eCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHH---HHHc
Confidence 98 89999999999999999999999999999999998 68999999999999 999999999999999876 4466
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccC--cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccc
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWAS--MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~--~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~ 233 (261)
| .++++++|++||+++|||||||+|.+ ++++++ +..++.+||||+++|+.+++|++|||||| ||+||+++|+
T Consensus 198 g-~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~---~~~~~~~y~v~~~~l~~a~~~ai~mH~lP--rg~EI~~eV~ 271 (299)
T 1pg5_A 198 N-YPVKEVENPFEVINEVDVLYVTRIQKERFVDEME---YEKIKGSYIVSLDLANKMKKDSIILHPLP--RVNEIDRKVD 271 (299)
T ss_dssp C-SCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHH---HHHHGGGGSBCHHHHHTSCTTCEEECCSC--CSSSBCGGGG
T ss_pred C-CeEEEeCCHHHHhcCCCEEEeCCcccccccCHHH---HHHhhcCcccCHHHHHhcCCCCEEECCCC--CCCccCHHHh
Confidence 6 57999999999999999999999976 554332 23456789999999999999999999999 7999999999
Q ss_pred cCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 234 EAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 234 ~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
++|+|+||+||+||+|+|||||+++||.
T Consensus 272 d~p~s~vf~QaeNrl~~r~AlL~~ll~~ 299 (299)
T 1pg5_A 272 KTTKAKYFEQASYGVPVRMSILTKIYGE 299 (299)
T ss_dssp GSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcccHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999973
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-89 Score=623.68 Aligned_cols=253 Identities=26% Similarity=0.323 Sum_probs=228.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCc--CCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhC-CCc
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDI--QMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFA-TVP 77 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s--~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~-~vP 77 (261)
++++|||||||||+|||.||++|||+++++++.++ |++||||++||+|+||+|+|+||+||+.++.++++|+++ ++|
T Consensus 44 la~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~~~~~vP 123 (310)
T 3csu_A 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVP 123 (310)
T ss_dssp EEEEESSCCHHHHHHHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHHHHCTTCC
T ss_pred EEEEecCCCccHHHHHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHHHhcCCCC
Confidence 58999999999999999999999999999988765 899999999999999999999999999999999999999 999
Q ss_pred EEeCC-CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcC-CcEEEEeCCCCCCCCHHHHHHHH
Q 024871 78 VINGL-TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVI-PFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 78 VINa~-~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~-g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
||||+ |+++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++ |+++++++|++|.|+++++++++
T Consensus 124 VINag~G~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~ 203 (310)
T 3csu_A 124 VLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLD 203 (310)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHH
T ss_pred EEcCccCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHH
Confidence 99986 5999999999999999999999999999999998 68999999999999 99999999999999999999999
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHH--HHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEA--AYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~--~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
+.| .++++++|++||+++|||||||+| |++|. +++.+++.+||||.++|+.+++|++|||||| ||+||+++
T Consensus 204 ~~g-~~~~~~~d~~eav~~aDvvyt~~~----q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP--rg~EI~~e 276 (310)
T 3csu_A 204 EKG-IAWSLHSSIEEVMAEVDILYMTRV----QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATD 276 (310)
T ss_dssp HTT-CCEEECSCGGGTTTTCSEEEECC---------------------CCBCGGGGTTCCTTCEEECCSC--CSSSBCHH
T ss_pred HcC-CeEEEEcCHHHHhcCCCEEEECCc----cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCC--CCCeecHH
Confidence 888 579999999999999999999999 33321 2233455689999999999999999999999 69999999
Q ss_pred cccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 232 VIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 232 v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+|+||+||+||+|+|||||.++||
T Consensus 277 V~d~p~s~vf~QaeNrl~~r~AlL~~ll~ 305 (310)
T 3csu_A 277 VDKTPHAWYFQQAGNGIFARQALLALVLN 305 (310)
T ss_dssp HHTSTTBCHHHHHHTHHHHHHHHHHHHHS
T ss_pred HhCCCccHHHHHHHhCHHHHHHHHHHHhc
Confidence 99999999999999999999999999986
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-88 Score=616.64 Aligned_cols=248 Identities=23% Similarity=0.293 Sum_probs=227.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|||||||||+|||.||++|||+++++++++||++||||++||+|+||+| +|+||+||+.++.++++|++++||||
T Consensus 39 la~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la~~~~vPVI 118 (304)
T 3r7f_A 39 AANLFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPIL 118 (304)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHCSSCEE
T ss_pred EEEEecCCChhHHHhHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHHHhCCCCEE
Confidence 58999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
||+ |+++||||+|+|+|||+|++|+++|+||+||||+ +||+|||+.+++++|++|++++|++|.|+. .+.|
T Consensus 119 Nagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~------~~~g 192 (304)
T 3r7f_A 119 NAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE------NTFG 192 (304)
T ss_dssp ESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT------CSSC
T ss_pred eCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch------hhcC
Confidence 996 7999999999999999999999999999999998 579999999999999999999999999832 1222
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~ 236 (261)
.++|++||+++|||||||+|....+++.. .+.+++.+||||.++|+.+++|++||||||++||+||+++|+++|
T Consensus 193 -----~~~d~~eav~~aDvvyt~~~q~er~~~~~-~~~~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~~eV~d~p 266 (304)
T 3r7f_A 193 -----TYVSMDEAVESSDVVMLLRIQNERHQSAV-SQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESE 266 (304)
T ss_dssp -----EECCHHHHHHHCSEEEECCCCTTTCCSSC-CSTTHHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTBCGGGTTST
T ss_pred -----ccCCHHHHhCCCCEEEeccchhhccccch-hHHHHhCCCccCHHHHhhcCCCCEEECCCCCCCCceeCHHHhCCC
Confidence 46899999999999999998542211100 234567889999999999999999999999999999999999999
Q ss_pred CcchHhHHhccHHHHHHHHHHHhc
Q 024871 237 YSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 237 ~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
+|+||+||+||+|+|||||+++|+
T Consensus 267 ~S~vf~QaeNrl~~r~AlL~~ll~ 290 (304)
T 3r7f_A 267 KSRIFKQMKNGVFIRMAVIQRALQ 290 (304)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999999999986
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-88 Score=612.66 Aligned_cols=246 Identities=23% Similarity=0.289 Sum_probs=230.1
Q ss_pred eeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHH-HhhhCCCcEEe
Q 024871 3 MIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILD-LAKFATVPVIN 80 (261)
Q Consensus 3 ~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~-~a~~~~vPVIN 80 (261)
++|||||||||+|||.|+++|||+++++++++||++||||++||+|+||+| +|+||+||+.++.+++ +|+++++||||
T Consensus 39 ~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~~D~iviR~~~~~~~~~~la~~~~vPVIN 118 (291)
T 3d6n_B 39 LFFSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLRLVN 118 (291)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHHTTCSEEEEEESSCCCSCHHHHHTCSSEEEE
T ss_pred EEecCCCccHHHHHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHhCCCCEEe
Confidence 899999999999999999999999999999999999999999999999999 5999999999999999 99999999999
Q ss_pred -CCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcC--CCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 81 -GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 81 -a~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd--~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
|+|+++||||+|+|+|||+|++|+++|+||+|||| .+||+|||+.+++++|+++++++|++|.|++ + + +.|
T Consensus 119 AG~g~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~-~-~---~~g- 192 (291)
T 3d6n_B 119 AGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD-V-E---VFK- 192 (291)
T ss_dssp EEETTTBCHHHHHHHHHHHHHHHSCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-G-G---GGC-
T ss_pred CccCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch-H-H---HCC-
Confidence 68999999999999999999999999999999999 6899999999999999999999999999876 2 2 344
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchh--HHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQK--EEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~--~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++++|++||+++|||||| .|.+|++. ....++.+++.+||||+++|+.++ +||||||+|||+||+++|+++
T Consensus 193 --~~~~~d~~eav~~aDvvy~-~~~q~er~~~~~~~~~~~~~~~y~v~~~~l~~a~---i~mH~lP~~Rg~EI~~eV~d~ 266 (291)
T 3d6n_B 193 --VDVFDDVDKGIDWADVVIW-LRLQKERQKENYIPSESSYFKQFGLTKERFEKVK---LYMHPGPVNRNVDIDHELVYT 266 (291)
T ss_dssp --EEEESSHHHHHHHCSEEEE-CCCCTHHHHTTSSSCHHHHHHHHSBCHHHHTTCC---CEECSSCCCBTTTBCGGGSSS
T ss_pred --CEEEcCHHHHhCCCCEEEE-eCcccCccccccchhHHHHHhhcCcCHHHHHhcc---cccCCCCCCCCceECHHHhCC
Confidence 7889999999999999999 99888762 222345678889999999999886 999999999999999999999
Q ss_pred CCcchHhHHhccHHHHHHHHHHHhc
Q 024871 236 PYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 236 ~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+|+||+||+||+|+|||||+++||
T Consensus 267 p~s~if~QaeN~l~~r~AlL~~~l~ 291 (291)
T 3d6n_B 267 EKSLIQEQVKNGIPVRKAIYKFLWT 291 (291)
T ss_dssp TTBCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999999999986
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-87 Score=613.87 Aligned_cols=246 Identities=30% Similarity=0.443 Sum_probs=232.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCC------------CCCCHHHHHHHHhhhccEEEEeeC------
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMG------------KREETRDAARVLCRYNDIIMARVF------ 62 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~------------kgEs~~Dt~~~ls~~~D~iv~R~~------ 62 (261)
++++|||||||||+|||.|+++|||++++++++++|++ ||||++||+||||+|+|+||+||+
T Consensus 39 l~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~ 118 (324)
T 1js1_X 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENR 118 (324)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEECCCCSSCH
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEEecccccccc
Confidence 58999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ----CcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEE-----EcCCCchHHHHHHHHhcCC
Q 024871 63 ----GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG--RLEGTKVVY-----VGDGNNIVHSWLLMASVIP 131 (261)
Q Consensus 63 ----~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~-----vGd~~~v~~S~~~~~~~~g 131 (261)
.++.++++|++++||||||+++.+||||+|+|+|||+|++| +++ +||+| ||| +||+||++.+++++|
T Consensus 119 ~~~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~-l~ia~a~~~~vGD-~rva~Sl~~~~~~~G 196 (324)
T 1js1_X 119 EYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPK-VVMTWAPHPRPLP-QAVPNSFAEWMNATD 196 (324)
T ss_dssp HHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHHHHHHCSSSSCE-EEEECCCCSSCCC-SHHHHHHHHHHHTSS
T ss_pred cccccchHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHHHcCCCCee-EEEEEEcccccCC-cchHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999 899 99999 999 999999999999999
Q ss_pred cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhH--HHHHHHhhhcCCcccHHHHHh
Q 024871 132 FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKL 209 (261)
Q Consensus 132 ~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~--~~~~~~~~~~~y~v~~~~~~~ 209 (261)
++|++++|++|.|+++++ + .+++++|+++|+++|||||+|+|.+|+|++ +...+ ..+||||.++|+.
T Consensus 197 ~~v~~~~P~~~~~~~~~~------~--~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r---~~~y~vt~e~l~~ 265 (324)
T 1js1_X 197 YEFVITHPEGYELDPKFV------G--NARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILST---DRNWTVGDRQMAV 265 (324)
T ss_dssp SEEEEECCTTCCCCHHHH------T--TCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCC---CTTSSBCHHHHTT
T ss_pred CEEEEeCCcccCCChhhc------c--ceEEECCHHHHhCCCCEEEecCcccCCCccccchHHH---hcCcccCHHHHHh
Confidence 999999999999998764 3 578899999999999999999999999754 21112 3789999999999
Q ss_pred cCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 210 AGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 210 a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++ |++||||||++||+||+++|+++|+|+||+||+||+|+|||||.++|+
T Consensus 266 a~-~ai~MHcLP~~Rg~EI~~eV~d~p~S~vf~QaeNrl~~r~AlL~~ll~ 315 (324)
T 1js1_X 266 TN-NAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLE 315 (324)
T ss_dssp SS-SCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CcEEECCCCCCCCcccCHHHhCCCcchHHHHHhhCHHHHHHHHHHHHh
Confidence 99 999999999999999999999999999999999999999999999985
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-86 Score=623.44 Aligned_cols=257 Identities=26% Similarity=0.383 Sum_probs=220.4
Q ss_pred EeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhh---
Q 024871 2 SMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKF--- 73 (261)
Q Consensus 2 ~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~--- 73 (261)
++||||||||||+|||.||++|||+++++++++||++||||++||+||||+|+|+||+||+ .+..+++++++
T Consensus 67 ~~lF~e~STRTR~SFE~A~~~LGg~~i~l~~~~ssl~kGEsl~DTarvLs~y~D~IviRh~~~~g~~~~~~~~la~~~~~ 146 (399)
T 3q98_A 67 ISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHGETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGAALDD 146 (399)
T ss_dssp EEEEEC-----CCHHHHHHHHHTCEEEECC-------CCTTHHHHHHHTCTTEEEEEEEECCCCCC---HHHHHHHHHHH
T ss_pred EEEECCCChhHHHHHHHHHHHcCCeEEEeCCccccCCCCCCHHHHHHHHHhhCcEEEEeccccCCcchHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999999999999999999999996 36677888876
Q ss_pred --------CCCcEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEcC-------CCchHHHHHHHHhcCCcEEE
Q 024871 74 --------ATVPVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVGD-------GNNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 74 --------~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vGd-------~~~v~~S~~~~~~~~g~~~~ 135 (261)
+.+|||||+|+++||||+|+|+|||+|++|+ ++|+||+|||| .+||+|||+.+++++|++|+
T Consensus 147 ~~~~~v~~~~~PVINal~d~~HPtQaLaDl~TI~E~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 147 GYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 226 (399)
T ss_dssp HHHTTSCSSCCEEEEEECSSCCHHHHHHHHHHHHHHHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEE
T ss_pred hcccccccCCCcEEeCCCCCcCcHHHHHHHHHHHHHhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEE
Confidence 2468999999999999999999999999997 68999999965 35899999999999999999
Q ss_pred EeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hHHH------------------HH
Q 024871 136 CACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KEEA------------------AY 192 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~~~------------------~~ 192 (261)
+++|++|.|++++++.++ +.| ..+++++|+++|+++|||||||+|.||++ .|+. .+
T Consensus 227 ~~~P~~~~~~~~~~~~a~~~a~~~G-~~i~~~~d~~eav~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~ 305 (399)
T 3q98_A 227 LAHPEGYDLIPDVVEVAKNNAKASG-GSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLA 305 (399)
T ss_dssp EECCTTCCCCHHHHHHHHHHHHHHT-CEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EECCcccCCCHHHHHHHHHHHHHcC-CEEEEEcCHHHHhCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhH
Confidence 999999999999887654 456 58999999999999999999999999985 3321 12
Q ss_pred HHhhhcCCcccHHHHHhcC-CCcEEeeCCCCC------CCcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 193 RKQAFQGFQVDEFLMKLAG-PKAYFMHCLPAE------RGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 193 ~~~~~~~y~v~~~~~~~a~-~~~~~mH~lP~~------rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
+.+++.+||||.++|+.++ +|++||||||++ ||+||+++|+++|+|++|+||+||+|+|||||.+++
T Consensus 306 r~~~~~~yqVn~elm~~a~~~daifMHcLPa~~~~~~~rg~EVt~eV~d~p~S~vf~QAeNrl~vrmAll~~~~ 379 (399)
T 3q98_A 306 QNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRK 379 (399)
T ss_dssp HHHTTTTCCBCHHHHHTSGGGCCEECCCSSCCEETTTBSSCSEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHccCcEECHHHHhhcCCCCcEEECCCCCCCcccCCCCCEeChhhhCCccccHHHHHhccHHHHHHHHHHhh
Confidence 4568899999999999987 599999999998 799999999999999999999999999999999875
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-85 Score=616.18 Aligned_cols=257 Identities=28% Similarity=0.397 Sum_probs=223.6
Q ss_pred EeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC-----CcchHHHHhhhC--
Q 024871 2 SMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF-----GHQDILDLAKFA-- 74 (261)
Q Consensus 2 ~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~-----~~~~~~~~a~~~-- 74 (261)
++||||||||||+|||+||++|||+++++++++||++||||++||+||||+|+|+||+||+ .+..++++|+++
T Consensus 64 ~~lF~epSTRTR~SFE~A~~~LGg~vi~l~~~~ss~~kGEsl~DTarvLs~y~D~IviRh~~~~g~~~~~~~~lA~~~~~ 143 (418)
T 2yfk_A 64 ISLFRDNSTRTRFSFASACNLLGLEVQDLDEGKSQISHGETVRETANMISFMADIIGIRDDMYIGKGNAYMHEVSESVQE 143 (418)
T ss_dssp EEEEC---CHHHHHHHHHHHHHTCEEEEECC--------CHHHHHHHHTTTTEEEEEEEECSSTTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCccHHHHHHHHHHHCCCeEEecCCCcccCCCCcCHHHHHHHHHHhCcEEEEecccccCcchHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999998 466788898875
Q ss_pred ---------CCcEEeCCCCCCChhHHHHHHHHHHHHhCC---CCCcEEEEEc-------CCCchHHHHHHHHhcCCcEEE
Q 024871 75 ---------TVPVINGLTDYNHPCQIMADALTIIEHVGR---LEGTKVVYVG-------DGNNIVHSWLLMASVIPFHFV 135 (261)
Q Consensus 75 ---------~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~---l~~~~i~~vG-------d~~~v~~S~~~~~~~~g~~~~ 135 (261)
.+|||||+|+++||||+|+|+|||+|++|+ |+|+||+||| |++||+||++.+++++|++|+
T Consensus 144 ~~~~~~~~~~~PVINa~~~~~HPtQaLaDl~TI~E~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 144 GYKDGVLEQRPTLVNLQCDIDHPTQAMADALHLIHEFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp HHHTTSCSSCCEEEEEEESSCCHHHHHHHHHHHHHHTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred hhcccccCCCCeEEeCCCCccChHHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 467999999999999999999999999998 7899999995 456899999999999999999
Q ss_pred EeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch-hHHH------------------HH
Q 024871 136 CACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ-KEEA------------------AY 192 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~-~~~~------------------~~ 192 (261)
+++|++|.|++++++.++ +.| +++++++|+++|+++|||||||+|.||++ .||. .+
T Consensus 224 l~~P~~~~~~p~~~~~a~~~a~~~G-~~v~~~~d~~eav~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~ 302 (418)
T 2yfk_A 224 LAHPEGYEIMPEVEEVAKKNAAEFG-GNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLS 302 (418)
T ss_dssp EECCTTCCCCHHHHHHHHHHHHHHS-SEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred EECCccccCCHHHHHHHHHHHHHcC-CEEEEEcCHHHHhcCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhh
Confidence 999999999988887654 466 58999999999999999999999999964 3432 12
Q ss_pred HHhhhcCCcccHHHHHhcCC-CcEEeeCCCCCC------CcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 193 RKQAFQGFQVDEFLMKLAGP-KAYFMHCLPAER------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 193 ~~~~~~~y~v~~~~~~~a~~-~~~~mH~lP~~r------g~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
+.+++.+||||+++|+.+++ |++||||||++| |+||+++|+++|+|+||+||+||+|+|||||.++.
T Consensus 303 ~~~~~~~y~vt~elm~~ak~~dai~MHcLPa~r~~~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r~AlL~~~~ 376 (418)
T 2yfk_A 303 QNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFDRYRVELYKEASYKPYVIAAMIFLSK 376 (418)
T ss_dssp HHGGGTTCCBCHHHHHTSGGGCCEECCCSCCCEETTTBSSCSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCHHHHHhcCCCCeEEECCCCCCCccCCCCCCEEChHHhCCCcchHHhHHhcCHHHHHHHHHHhh
Confidence 35688999999999999976 999999999986 99999999999999999999999999999998764
|
| >3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-82 Score=590.86 Aligned_cols=257 Identities=37% Similarity=0.618 Sum_probs=230.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCC------------CcCCCCCCCHHHHHHHHhhhccEEEEeeC------
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD------------DIQMGKREETRDAARVLCRYNDIIMARVF------ 62 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~------------~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~------ 62 (261)
+++||||||||||+|||.||++|||++++++++ .++.+||||++||+++||+|+|+||+|++
T Consensus 61 va~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~ss~~~~~~~~s~~~~~k~Es~~DTarvls~y~D~iviR~~~~~~~~ 140 (359)
T 3kzn_A 61 IALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDW 140 (359)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECHHHHSCCEECSSSCCCCSSCCEEHHHHHHHHHHHCSEEEEECCCCSSCH
T ss_pred EEEEecCCCccHHHHHHHHHHHcCCCEEecCCCCccccccccccccccCcccchHHHHHHHHhccCcEEEEEccccccch
Confidence 589999999999999999999999999999753 24557899999999999999999999965
Q ss_pred ----CcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCC--CCCcEEEEEcC------CCchHHHHHHHHhcC
Q 024871 63 ----GHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR--LEGTKVVYVGD------GNNIVHSWLLMASVI 130 (261)
Q Consensus 63 ----~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~--l~~~~i~~vGd------~~~v~~S~~~~~~~~ 130 (261)
.++.++++|++++|||||+ |+++||||+|+|+|||+|+||. ++|+|++++|| .+||+||++.+++++
T Consensus 141 ~~~~~~~~~~~~a~~~~vPVIN~-g~~~HPtQaL~Dl~Ti~e~~G~~dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~ 219 (359)
T 3kzn_A 141 SKDREDQVLKSFAKYSPVPVINM-ETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM 219 (359)
T ss_dssp HHHTTCHHHHHHHHHCSSCEEES-SSSCCHHHHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT
T ss_pred hcchhhHHHHHHHHhCCCcccCc-ccccCchHHHHHHHHHHHHcCCccccCCeEEEEEeecCCccccchhhhhHHHHHhc
Confidence 5678999999999999996 6789999999999999999996 88999999876 267999999999999
Q ss_pred CcEEEEeCCC-CCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEecccCcch---hHHHHHHHhhhcCCcc
Q 024871 131 PFHFVCACPK-GFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSDVWASMGQ---KEEAAYRKQAFQGFQV 202 (261)
Q Consensus 131 g~~~~~~~P~-~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~---~~~~~~~~~~~~~y~v 202 (261)
|+++++++|+ +|.|+++++++++ +.| .++++++|+++|+++|||||||+|.+|++ .+....+++++.+|++
T Consensus 220 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~d~~eav~~aDvvyt~r~q~~r~~~~~~~~~~~~~~~~~y~v 298 (359)
T 3kzn_A 220 GMDVTLLCPTPDYILDERYMDWAAQNVAESG-GSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIV 298 (359)
T ss_dssp TCEEEEECSSGGGCCCHHHHHHHHHHHHHHS-CEEEEECCHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSB
T ss_pred cccEEEEecccccCCCHHHHHHHHHHHHhhC-CCcccccCHHHHhcCCeEEEEEEEEEeecccchhhhHHHHHHHhccCh
Confidence 9999999995 7899998887654 456 58999999999999999999999998853 2223345678899999
Q ss_pred cHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 203 DEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 203 ~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+++|+.+ +|++||||||+|||+||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 299 ~~~l~~~~-~~ai~MHplP~~Rg~EI~~eV~d~p~S~if~QaeNgl~vrmAlL~~llG 355 (359)
T 3kzn_A 299 DERKMALT-NNGVFSHCLPLRRNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALVG 355 (359)
T ss_dssp CHHHHHTS-SSCEEECCSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCC-CCCEEECCCCCCCCCCcCHHHHCCCcchHHHHHHhhHHHHHHHHHHHhC
Confidence 99999865 5899999999999999999999999999999999999999999999998
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=9.1e-07 Score=83.70 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=97.6
Q ss_pred hCCCcEEeC-CCCCCC-------hhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 73 FATVPVING-LTDYNH-------PCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 73 ~~~vPVINa-~~~~~H-------PtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
...+||||+ ++...| ..|.+.|.+ ++.....+.|++|+++| .+++..+.+..+..+|++++++.|.
T Consensus 170 ~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi-~ratg~~L~GktVgIiG-~G~IG~~vA~~Lka~Ga~Viv~D~~---- 243 (436)
T 3h9u_A 170 KLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI-KRATDVMIAGKTACVCG-YGDVGKGCAAALRGFGARVVVTEVD---- 243 (436)
T ss_dssp CCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH-HHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC----
T ss_pred CCCCceEeechhhhhhhhhccccchHHHHHHH-HHhcCCcccCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEECCC----
Confidence 478999997 454444 678998877 33333469999999999 5889999999999999999887663
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r 224 (261)
+.....+...|. + ..+++++++++|||++.. +. ..-|+.+.++..+++++|++..+ .
T Consensus 244 -p~~a~~A~~~G~---~-~~sL~eal~~ADVVilt~----gt------------~~iI~~e~l~~MK~gAIVINvgR--g 300 (436)
T 3h9u_A 244 -PINALQAAMEGY---Q-VLLVEDVVEEAHIFVTTT----GN------------DDIITSEHFPRMRDDAIVCNIGH--F 300 (436)
T ss_dssp -HHHHHHHHHTTC---E-ECCHHHHTTTCSEEEECS----SC------------SCSBCTTTGGGCCTTEEEEECSS--S
T ss_pred -hhhhHHHHHhCC---e-ecCHHHHHhhCCEEEECC----CC------------cCccCHHHHhhcCCCcEEEEeCC--C
Confidence 222233445552 2 348999999999999753 21 24478888999999999999875 3
Q ss_pred Ccccccccc
Q 024871 225 GVEVTEGVI 233 (261)
Q Consensus 225 g~Ev~~~v~ 233 (261)
+.||+.+.+
T Consensus 301 ~vEID~~~L 309 (436)
T 3h9u_A 301 DTEIQVAWL 309 (436)
T ss_dssp GGGBCHHHH
T ss_pred CCccCHHHH
Confidence 457776544
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=68.56 Aligned_cols=129 Identities=13% Similarity=0.120 Sum_probs=90.2
Q ss_pred HhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCH
Q 024871 70 LAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDK 146 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~ 146 (261)
.++..+|+|.|+-+...+++ .+++-++.+.+++| .+.|++|++|| .+++..+++..+..+|++++.+.|..
T Consensus 76 ~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~----- 149 (380)
T 2o4c_A 76 YFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVG-AGQVGGRLVEVLRGLGWKVLVCDPPR----- 149 (380)
T ss_dssp HHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECHHH-----
T ss_pred HHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCh-----
Confidence 34456899999866555565 78899999998888 59999999999 69999999999999999998876531
Q ss_pred HHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 147 ETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 147 ~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
. ....|. . ..++++.++++|+|..-. +.... . ++....-++++.++..+++++++.+.
T Consensus 150 ~----~~~~g~---~-~~~l~ell~~aDvV~l~~--Plt~~-g-----~~~T~~li~~~~l~~mk~gailIN~s 207 (380)
T 2o4c_A 150 Q----AREPDG---E-FVSLERLLAEADVISLHT--PLNRD-G-----EHPTRHLLDEPRLAALRPGTWLVNAS 207 (380)
T ss_dssp H----HHSTTS---C-CCCHHHHHHHCSEEEECC--CCCSS-S-----SSCCTTSBCHHHHHTSCTTEEEEECS
T ss_pred h----hhccCc---c-cCCHHHHHHhCCEEEEec--cCccc-c-----ccchhhhcCHHHHhhCCCCcEEEECC
Confidence 1 012231 1 358999999999999853 11111 0 01112335666777677777777653
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00071 Score=64.84 Aligned_cols=129 Identities=15% Similarity=0.055 Sum_probs=91.0
Q ss_pred hCCCcEEeC-CCCC------CC-hhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCC
Q 024871 73 FATVPVING-LTDY------NH-PCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFE 143 (261)
Q Consensus 73 ~~~vPVINa-~~~~------~H-PtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~ 143 (261)
...+||||. ++.. .| ..|.+.|- +.+..+ .+.|++++++|-+ .+..+.+..+..+|++++++.+.
T Consensus 224 ~L~iPvinvnDs~tK~~fDn~yGt~~sl~dg--i~r~tg~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~--- 297 (488)
T 3ond_A 224 TLLFPAINVNDSVTKSKFDNLYGCRHSLPDG--LMRATDVMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEID--- 297 (488)
T ss_dssp CCCSCEEECTTSHHHHTTHHHHHHHHHHHHH--HHHHHCCCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSC---
T ss_pred CCCCceecccchhhhhHhhhhccccHHHHHH--HHHHcCCcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCC---
Confidence 468999997 4322 23 44778884 445555 4999999999975 99999999999999999887553
Q ss_pred CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 144 PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 144 ~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
+.-.+.+...|. . ..+++++++.+|+++... +. ...++.+.++..+++++|......
T Consensus 298 --~~~a~~Aa~~g~---d-v~~lee~~~~aDvVi~at----G~------------~~vl~~e~l~~mk~gaiVvNaG~~- 354 (488)
T 3ond_A 298 --PICALQATMEGL---Q-VLTLEDVVSEADIFVTTT----GN------------KDIIMLDHMKKMKNNAIVCNIGHF- 354 (488)
T ss_dssp --HHHHHHHHHTTC---E-ECCGGGTTTTCSEEEECS----SC------------SCSBCHHHHTTSCTTEEEEESSST-
T ss_pred --HHHHHHHHHhCC---c-cCCHHHHHHhcCEEEeCC----CC------------hhhhhHHHHHhcCCCeEEEEcCCC-
Confidence 333334445552 2 357899999999998753 21 245777788888999999988753
Q ss_pred CCcccccc
Q 024871 224 RGVEVTEG 231 (261)
Q Consensus 224 rg~Ev~~~ 231 (261)
..|++.+
T Consensus 355 -~~Ei~~~ 361 (488)
T 3ond_A 355 -DNEIDML 361 (488)
T ss_dssp -TTTBTHH
T ss_pred -CcccchH
Confidence 2344433
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00095 Score=61.36 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|+-+....+. .+++=++.+.+++ + .+.|++|+++| .+++..+.+.
T Consensus 103 ~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG-~G~IG~~vA~ 181 (351)
T 3jtm_A 103 QAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVG-AGRIGKLLLQ 181 (351)
T ss_dssp HHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC-CSHHHHHHHH
T ss_pred HHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEE-eCHHHHHHHH
Confidence 445567899999755332222 2333344443221 2 48899999999 5889999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||++++...+... +. +.+++.|. +..+++++.++++|+|..-.
T Consensus 182 ~l~~~G~~V~~~dr~~~--~~---~~~~~~g~---~~~~~l~ell~~aDvV~l~~ 228 (351)
T 3jtm_A 182 RLKPFGCNLLYHDRLQM--AP---ELEKETGA---KFVEDLNEMLPKCDVIVINM 228 (351)
T ss_dssp HHGGGCCEEEEECSSCC--CH---HHHHHHCC---EECSCHHHHGGGCSEEEECS
T ss_pred HHHHCCCEEEEeCCCcc--CH---HHHHhCCC---eEcCCHHHHHhcCCEEEECC
Confidence 99999999887766431 22 22344552 44578999999999999854
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0017 Score=59.62 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=64.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|++|| .+++..+++..+..||+++....|... +.+. ..| ++..+++++.++++|+|..-. +
T Consensus 170 ~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~--~~~~-----~~g---~~~~~~l~ell~~sDvV~l~~--P 236 (345)
T 4g2n_A 170 GLTGRRLGIFG-MGRIGRAIATRARGFGLAIHYHNRTRL--SHAL-----EEG---AIYHDTLDSLLGASDIFLIAA--P 236 (345)
T ss_dssp CCTTCEEEEES-CSHHHHHHHHHHHTTTCEEEEECSSCC--CHHH-----HTT---CEECSSHHHHHHTCSEEEECS--C
T ss_pred ccCCCEEEEEE-eChhHHHHHHHHHHCCCEEEEECCCCc--chhh-----hcC---CeEeCCHHHHHhhCCEEEEec--C
Confidence 37889999999 589999999999999999998877532 1111 113 244579999999999999864 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+. ..-++.+.++..+++++|.-+
T Consensus 237 lt~~T----------~~li~~~~l~~mk~gailIN~ 262 (345)
T 4g2n_A 237 GRPEL----------KGFLDHDRIAKIPEGAVVINI 262 (345)
T ss_dssp CCGGG----------TTCBCHHHHHHSCTTEEEEEC
T ss_pred CCHHH----------HHHhCHHHHhhCCCCcEEEEC
Confidence 11111 122566666666666666655
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0059 Score=57.92 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCCcEEeC-CCC------CCChh-HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTD------YNHPC-QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~------~~HPt-Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++- +.|.| |.+.|-+ .+..+ .+.|++++++|- +++....+..+..||++++++-+
T Consensus 207 L~~PvinVnds~tK~~fDn~yG~~eslvdgI--~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~----- 278 (464)
T 3n58_A 207 LPFPAINVNDSVTKSKFDNKYGCKESLVDGI--RRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEV----- 278 (464)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHH--HHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----
T ss_pred CCCCEEeeccHhhhhhhhhhhcchHHHHHHH--HHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeC-----
Confidence 58999996 431 12444 6666643 34444 599999999995 67999999999999999887743
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r 224 (261)
++.....+...|. + ..+++++++++|||.+.. +. ..-|+.+.++..|+++++.-+.= -
T Consensus 279 dp~~a~~A~~~G~---~-vv~LeElL~~ADIVv~at----gt------------~~lI~~e~l~~MK~GAILINvGR--g 336 (464)
T 3n58_A 279 DPICALQAAMDGF---E-VVTLDDAASTADIVVTTT----GN------------KDVITIDHMRKMKDMCIVGNIGH--F 336 (464)
T ss_dssp SHHHHHHHHHTTC---E-ECCHHHHGGGCSEEEECC----SS------------SSSBCHHHHHHSCTTEEEEECSS--S
T ss_pred CcchhhHHHhcCc---e-eccHHHHHhhCCEEEECC----CC------------ccccCHHHHhcCCCCeEEEEcCC--C
Confidence 2222223334452 3 347999999999998753 21 24589999999999999988653 2
Q ss_pred Cccccccccc
Q 024871 225 GVEVTEGVIE 234 (261)
Q Consensus 225 g~Ev~~~v~~ 234 (261)
..||+.+-+.
T Consensus 337 dvEID~~aL~ 346 (464)
T 3n58_A 337 DNEIQVAALR 346 (464)
T ss_dssp TTTBTCGGGT
T ss_pred CcccCHHHHH
Confidence 3567766554
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0031 Score=60.32 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCH
Q 024871 88 PCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDP 166 (261)
Q Consensus 88 PtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~ 166 (261)
+.|.+.|- +.+..+ .+.|++|+++| .+++..+.+..+..+|+++++..|.. .....+...|. + ..++
T Consensus 239 ~~~~l~~g--w~r~~~~~l~GktVgIIG-~G~IG~~vA~~l~~~G~~Viv~d~~~-----~~~~~a~~~g~---~-~~~l 306 (479)
T 1v8b_A 239 CRHSLPDG--LMRATDFLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDP-----ICAIQAVMEGF---N-VVTL 306 (479)
T ss_dssp HHHHHHHH--HHHHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH-----HHHHHHHTTTC---E-ECCH
T ss_pred HHHHHhhh--hhhccccccCCCEEEEEe-eCHHHHHHHHHHHhCcCEEEEEeCCh-----hhHHHHHHcCC---E-ecCH
Confidence 44555554 333345 59999999999 58899999999999999999887642 11112334442 3 3589
Q ss_pred HHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 167 KEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 167 ~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+++++++|+|++-. . ...-|+.+.++..+++++++++..
T Consensus 307 ~ell~~aDiVi~~~----~------------t~~lI~~~~l~~MK~gailiNvgr 345 (479)
T 1v8b_A 307 DEIVDKGDFFITCT----G------------NVDVIKLEHLLKMKNNAVVGNIGH 345 (479)
T ss_dssp HHHTTTCSEEEECC----S------------SSSSBCHHHHTTCCTTCEEEECSS
T ss_pred HHHHhcCCEEEECC----C------------hhhhcCHHHHhhcCCCcEEEEeCC
Confidence 99999999999973 1 124478889998999999999876
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0033 Score=59.05 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=67.4
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHH-----------------h-C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEH-----------------V-G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~-----------------~-g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|+-+....+. .+++=++.+.++ + + .+.|++|+++| .+++..+++..+
T Consensus 97 ~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIG-lG~IG~~vA~~l 175 (416)
T 3k5p_A 97 KAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVG-YGNIGSQVGNLA 175 (416)
T ss_dssp HHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEEC-CSHHHHHHHHHH
T ss_pred HHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEe-eCHHHHHHHHHH
Confidence 444566899999755333332 233334444322 1 1 37899999999 689999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||++++...|..-... + ......++++.++++|+|..-.
T Consensus 176 ~~~G~~V~~yd~~~~~~~----------~--~~~~~~sl~ell~~aDvV~lhv 216 (416)
T 3k5p_A 176 ESLGMTVRYYDTSDKLQY----------G--NVKPAASLDELLKTSDVVSLHV 216 (416)
T ss_dssp HHTTCEEEEECTTCCCCB----------T--TBEECSSHHHHHHHCSEEEECC
T ss_pred HHCCCEEEEECCcchhcc----------c--CcEecCCHHHHHhhCCEEEEeC
Confidence 999999998887532111 1 1244678999999999998753
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=60.39 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=82.0
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD 145 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~ 145 (261)
+.++..+|+|.|+-+-...+. -+++=++.+.++.| .+.|++|++|| .+++..+++..+..+|+++....|..
T Consensus 78 ~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~---- 152 (381)
T 3oet_A 78 AWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVG-VGNVGSRLQTRLEALGIRTLLCDPPR---- 152 (381)
T ss_dssp HHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECHHH----
T ss_pred HHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCh----
Confidence 444567899999755333332 34444666666666 59999999999 58999999999999999998886521
Q ss_pred HHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 146 KETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 146 ~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
+ ...+. ....+++++++++|+|..-. +...+- ++-...-++.+.++..++++++.-+
T Consensus 153 -~-----~~~~~---~~~~sl~ell~~aDiV~l~~--Plt~~g------~~~T~~li~~~~l~~mk~gailIN~ 209 (381)
T 3oet_A 153 -A-----ARGDE---GDFRTLDELVQEADVLTFHT--PLYKDG------PYKTLHLADETLIRRLKPGAILINA 209 (381)
T ss_dssp -H-----HTTCC---SCBCCHHHHHHHCSEEEECC--CCCCSS------TTCCTTSBCHHHHHHSCTTEEEEEC
T ss_pred -H-----HhccC---cccCCHHHHHhhCCEEEEcC--cCCccc------cccchhhcCHHHHhcCCCCcEEEEC
Confidence 0 01111 12468999999999998853 111110 0001122456666666666666554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.004 Score=56.08 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=70.7
Q ss_pred HhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh----------------C-CCCCcEEEEEcCCCchHHHHHHHHhcC
Q 024871 70 LAKFATVPVINGLTDYNHPC--QIMADALTIIEHV----------------G-RLEGTKVVYVGDGNNIVHSWLLMASVI 130 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~----------------g-~l~~~~i~~vGd~~~v~~S~~~~~~~~ 130 (261)
.++..+|+|.|.-+....++ .+++=++.+.+++ + .+.|++|++|| .+++..+++..+..+
T Consensus 86 ~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG-~G~IG~~~A~~l~~~ 164 (313)
T 2ekl_A 86 EAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVG-FGRIGTKVGIIANAM 164 (313)
T ss_dssp HHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEES-CSHHHHHHHHHHHHT
T ss_pred HHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEe-eCHHHHHHHHHHHHC
Confidence 34556799999765444443 4455566665442 2 48899999999 589999999999999
Q ss_pred CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 131 PFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 131 g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|++++...|.. ... .+++.|. .. .++++.++++|+|..-.
T Consensus 165 G~~V~~~d~~~---~~~---~~~~~g~---~~-~~l~ell~~aDvVvl~~ 204 (313)
T 2ekl_A 165 GMKVLAYDILD---IRE---KAEKINA---KA-VSLEELLKNSDVISLHV 204 (313)
T ss_dssp TCEEEEECSSC---CHH---HHHHTTC---EE-CCHHHHHHHCSEEEECC
T ss_pred CCEEEEECCCc---chh---HHHhcCc---ee-cCHHHHHhhCCEEEEec
Confidence 99998887643 221 2445563 22 48999999999999853
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0055 Score=56.23 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=65.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++| .+++.++.+..+..||++++...|.. . .+.+.+.|. +..++++++++++|+|..-. +
T Consensus 157 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~---~---~~~~~~~g~---~~~~~l~ell~~aDiV~l~~--P 224 (352)
T 3gg9_A 157 VLKGQTLGIFG-YGKIGQLVAGYGRAFGMNVLVWGREN---S---KERARADGF---AVAESKDALFEQSDVLSVHL--R 224 (352)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSHH---H---HHHHHHTTC---EECSSHHHHHHHCSEEEECC--C
T ss_pred cCCCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEECCCC---C---HHHHHhcCc---eEeCCHHHHHhhCCEEEEec--c
Confidence 37899999999 58999999999999999998877631 1 123445552 45679999999999998853 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
...+. ..-++.+.++..+++++|..+.
T Consensus 225 lt~~t----------~~li~~~~l~~mk~gailIN~a 251 (352)
T 3gg9_A 225 LNDET----------RSIITVADLTRMKPTALFVNTS 251 (352)
T ss_dssp CSTTT----------TTCBCHHHHTTSCTTCEEEECS
T ss_pred CcHHH----------HHhhCHHHHhhCCCCcEEEECC
Confidence 11111 1224566666666666665543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0058 Score=55.70 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=68.2
Q ss_pred hhhCCCcEEeCCCCCCCh--hHHHHHHHHHHHHh-------------------CCCCCcEEEEEcCCCchHHHHHHHHhc
Q 024871 71 AKFATVPVINGLTDYNHP--CQIMADALTIIEHV-------------------GRLEGTKVVYVGDGNNIVHSWLLMASV 129 (261)
Q Consensus 71 a~~~~vPVINa~~~~~HP--tQ~L~Dl~Ti~e~~-------------------g~l~~~~i~~vGd~~~v~~S~~~~~~~ 129 (261)
++..+|+|.|+-+-...+ -.+++=++.+.+++ ..+.|++|++|| .+++..+++..+..
T Consensus 108 ~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIG-lG~IG~~vA~~l~~ 186 (335)
T 2g76_A 108 ATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILG-LGRIGREVATRMQS 186 (335)
T ss_dssp HHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEEC-CSHHHHHHHHHHHT
T ss_pred HHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEe-ECHHHHHHHHHHHH
Confidence 344578999975433333 22344455554331 248899999999 58999999999999
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 130 IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 130 ~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+|++++...|.. .++ .+.+.|. + ..+++++++++|+|..-.
T Consensus 187 ~G~~V~~~d~~~---~~~---~~~~~g~---~-~~~l~ell~~aDvV~l~~ 227 (335)
T 2g76_A 187 FGMKTIGYDPII---SPE---VSASFGV---Q-QLPLEEIWPLCDFITVHT 227 (335)
T ss_dssp TTCEEEEECSSS---CHH---HHHHTTC---E-ECCHHHHGGGCSEEEECC
T ss_pred CCCEEEEECCCc---chh---hhhhcCc---e-eCCHHHHHhcCCEEEEec
Confidence 999998887642 221 3445663 2 248999999999999853
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0072 Score=54.90 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=67.9
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHh--------------------C-CCCCcEEEEEcCCCchHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEHV--------------------G-RLEGTKVVYVGDGNNIVHSWLL 125 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~--------------------g-~l~~~~i~~vGd~~~v~~S~~~ 125 (261)
+.++..+|+|.|+-+-...+. .+|+=++.+.++. | .+.|++|+++| .+++.++++.
T Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG-~G~IG~~vA~ 162 (330)
T 4e5n_A 84 DACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLG-MGAIGLAMAD 162 (330)
T ss_dssp HHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEEC-CSHHHHHHHH
T ss_pred HHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEe-eCHHHHHHHH
Confidence 344556899999755332222 2333344333210 1 37899999999 5899999999
Q ss_pred HHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 126 MASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 126 ~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||++++...|..- .. +.+.+.| +. ..+++++++++|+|..-.
T Consensus 163 ~l~~~G~~V~~~d~~~~--~~---~~~~~~g---~~-~~~l~ell~~aDvV~l~~ 208 (330)
T 4e5n_A 163 RLQGWGATLQYHEAKAL--DT---QTEQRLG---LR-QVACSELFASSDFILLAL 208 (330)
T ss_dssp HTTTSCCEEEEECSSCC--CH---HHHHHHT---EE-ECCHHHHHHHCSEEEECC
T ss_pred HHHHCCCEEEEECCCCC--cH---hHHHhcC---ce-eCCHHHHHhhCCEEEEcC
Confidence 99999999988877531 22 2233455 23 348999999999998864
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0037 Score=56.51 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=62.6
Q ss_pred hhCCCcEEeCCCCCCChhHHHHH-----HHHHHHH---------hC--------CCCCcEEEEEcCCCchHHHHHHHHhc
Q 024871 72 KFATVPVINGLTDYNHPCQIMAD-----ALTIIEH---------VG--------RLEGTKVVYVGDGNNIVHSWLLMASV 129 (261)
Q Consensus 72 ~~~~vPVINa~~~~~HPtQ~L~D-----l~Ti~e~---------~g--------~l~~~~i~~vGd~~~v~~S~~~~~~~ 129 (261)
...++||.|.-+... +++.++ ++.+.++ .| .+.|++|+++| .+++..+++..+..
T Consensus 84 ~~~gi~v~~~~~~~~--~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG-~G~IG~~vA~~l~~ 160 (315)
T 3pp8_A 84 LDASIPLFRLEDTGM--GLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMG-AGVLGAKVAESLQA 160 (315)
T ss_dssp SCTTSCEEEC--CCC--HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEEC-CSHHHHHHHHHHHT
T ss_pred hcCCCEEEEcCCCCc--cHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEe-eCHHHHHHHHHHHH
Confidence 345899999643322 455665 3333221 12 37899999999 48999999999999
Q ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 130 IPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 130 ~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||++++...+..-... +.....-..+++++++++|+|..-.
T Consensus 161 ~G~~V~~~dr~~~~~~----------~~~~~~~~~~l~ell~~aDiV~l~~ 201 (315)
T 3pp8_A 161 WGFPLRCWSRSRKSWP----------GVESYVGREELRAFLNQTRVLINLL 201 (315)
T ss_dssp TTCCEEEEESSCCCCT----------TCEEEESHHHHHHHHHTCSEEEECC
T ss_pred CCCEEEEEcCCchhhh----------hhhhhcccCCHHHHHhhCCEEEEec
Confidence 9999988765432211 1111111257899999999998853
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.011 Score=53.99 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=78.2
Q ss_pred HHhhhCCCcEEeCCCCCCChhHHHHH-----HHHHHHH------------------h--C-CCCCcEEEEEcCCCchHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPCQIMAD-----ALTIIEH------------------V--G-RLEGTKVVYVGDGNNIVHS 122 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPtQ~L~D-----l~Ti~e~------------------~--g-~l~~~~i~~vGd~~~v~~S 122 (261)
+.++..+|+|.|+-+-. +++.+| ++.+.++ + | .+.|+||++|| .+++..+
T Consensus 110 ~~a~~~gI~V~n~pg~~---~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIG-lG~IG~~ 185 (340)
T 4dgs_A 110 ARARRRNIDVTTTPGVL---ADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLG-LGQIGRA 185 (340)
T ss_dssp HHHHHTTCEEECCCSSS---HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEEC-CSHHHHH
T ss_pred HHHHhCCEEEEECCCCC---cchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEEC-CCHHHHH
Confidence 34455689999975533 344444 3333221 1 1 48899999999 4899999
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcc
Q 024871 123 WLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQV 202 (261)
Q Consensus 123 ~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v 202 (261)
++..+..+|+++....|..-. ..+ .....+++++++++|+|..-. +...+. ..-+
T Consensus 186 vA~~l~~~G~~V~~~dr~~~~----------~~~---~~~~~sl~ell~~aDvVil~v--P~t~~t----------~~li 240 (340)
T 4dgs_A 186 LASRAEAFGMSVRYWNRSTLS----------GVD---WIAHQSPVDLARDSDVLAVCV--AASAAT----------QNIV 240 (340)
T ss_dssp HHHHHHTTTCEEEEECSSCCT----------TSC---CEECSSHHHHHHTCSEEEECC----------------------
T ss_pred HHHHHHHCCCEEEEEcCCccc----------ccC---ceecCCHHHHHhcCCEEEEeC--CCCHHH----------HHHh
Confidence 999999999999887764311 112 244678999999999999863 111111 1224
Q ss_pred cHHHHHhcCCCcEEeeCC
Q 024871 203 DEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 203 ~~~~~~~a~~~~~~mH~l 220 (261)
+++.++..+++++|.-+.
T Consensus 241 ~~~~l~~mk~gailIN~a 258 (340)
T 4dgs_A 241 DASLLQALGPEGIVVNVA 258 (340)
T ss_dssp CHHHHHHTTTTCEEEECS
T ss_pred hHHHHhcCCCCCEEEECC
Confidence 666667677777776653
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=55.20 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=66.5
Q ss_pred HHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHH-----------------h-C-CCCCcEEEEEcCCCchHHHHHHHH
Q 024871 69 DLAKFATVPVINGLTDYNHPC--QIMADALTIIEH-----------------V-G-RLEGTKVVYVGDGNNIVHSWLLMA 127 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~-----------------~-g-~l~~~~i~~vGd~~~v~~S~~~~~ 127 (261)
+.++..+|+|.|+-+....+. .+++=++.+.++ + | .+.|++++++| .+++..+++..+
T Consensus 86 ~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIG-lG~IG~~vA~~l 164 (404)
T 1sc6_A 86 DAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIG-YGHIGTQLGILA 164 (404)
T ss_dssp HHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEEC-CSHHHHHHHHHH
T ss_pred HHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEe-ECHHHHHHHHHH
Confidence 344566899999754332222 233334444322 1 2 48999999999 589999999999
Q ss_pred hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 128 SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 128 ~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..||++++...|..... .+ .+....++++.++++|+|..-
T Consensus 165 ~~~G~~V~~~d~~~~~~----------~~--~~~~~~~l~ell~~aDvV~l~ 204 (404)
T 1sc6_A 165 ESLGMYVYFYDIENKLP----------LG--NATQVQHLSDLLNMSDVVSLH 204 (404)
T ss_dssp HHTTCEEEEECSSCCCC----------CT--TCEECSCHHHHHHHCSEEEEC
T ss_pred HHCCCEEEEEcCCchhc----------cC--CceecCCHHHHHhcCCEEEEc
Confidence 99999999887743211 12 134566899999999999885
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.019 Score=55.09 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=71.6
Q ss_pred HhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 101 HVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 101 ~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
..| .+.|++|+++| .+++..+.+..+..+|+++++..|.. .-...+...|. + ..+++++++++|+|++.
T Consensus 270 ~~g~~L~GktVgIIG-~G~IG~~vA~~l~~~G~~V~v~d~~~-----~~~~~a~~~G~---~-~~~l~ell~~aDiVi~~ 339 (494)
T 3d64_A 270 ATDVMIAGKIAVVAG-YGDVGKGCAQSLRGLGATVWVTEIDP-----ICALQAAMEGY---R-VVTMEYAADKADIFVTA 339 (494)
T ss_dssp HHCCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSCH-----HHHHHHHTTTC---E-ECCHHHHTTTCSEEEEC
T ss_pred ccccccCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCh-----HhHHHHHHcCC---E-eCCHHHHHhcCCEEEEC
Confidence 345 59999999999 58899999999999999999887642 11112233442 2 34899999999999997
Q ss_pred cccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 180 VWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
. . ...-|+.+.++..|+++++..+..
T Consensus 340 ~----~------------t~~lI~~~~l~~MK~gAilINvgr 365 (494)
T 3d64_A 340 T----G------------NYHVINHDHMKAMRHNAIVCNIGH 365 (494)
T ss_dssp S----S------------SSCSBCHHHHHHCCTTEEEEECSS
T ss_pred C----C------------cccccCHHHHhhCCCCcEEEEcCC
Confidence 4 1 123478889999999999999876
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.014 Score=51.73 Aligned_cols=128 Identities=9% Similarity=0.120 Sum_probs=84.8
Q ss_pred HHhhhCCCcEEeCCCCCC---ChhHHHHHHH--HHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCC
Q 024871 69 DLAKFATVPVINGLTDYN---HPCQIMADAL--TIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGF 142 (261)
Q Consensus 69 ~~a~~~~vPVINa~~~~~---HPtQ~L~Dl~--Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~ 142 (261)
+.++..+++|.|...... .-+.+.++.. -+.+.++ .+.|++|+++| .+++....+..+..+|++++++.|..
T Consensus 111 ~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~- 188 (293)
T 3d4o_A 111 QCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARES- 188 (293)
T ss_dssp HHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSH-
T ss_pred HHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCH-
Confidence 456667889999642100 0123444422 2334455 69999999999 58899999999999999988876632
Q ss_pred CCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 143 EPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 143 ~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+-.+.+++.|. ...-.+++++.++++|+|+... . ...++++.++..+++++++.+.
T Consensus 189 ----~~~~~~~~~g~-~~~~~~~l~~~l~~aDvVi~~~----p-------------~~~i~~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 189 ----DLLARIAEMGM-EPFHISKAAQELRDVDVCINTI----P-------------ALVVTANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp ----HHHHHHHHTTS-EEEEGGGHHHHTTTCSEEEECC----S-------------SCCBCHHHHHHSCTTCEEEECS
T ss_pred ----HHHHHHHHCCC-eecChhhHHHHhcCCCEEEECC----C-------------hHHhCHHHHHhcCCCCEEEEec
Confidence 22233445563 2222357889999999999874 1 0235667777788888888874
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.011 Score=54.46 Aligned_cols=92 Identities=12% Similarity=0.127 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+.|++|++|| .+++..+.+..+..||++++...|.. .++ .+.+.|. . ..++++.++++|+|..-. +.
T Consensus 174 l~gktvGIIG-lG~IG~~vA~~l~~fG~~V~~~d~~~---~~~---~~~~~g~---~-~~~l~ell~~aDvV~l~~--Pl 240 (365)
T 4hy3_A 174 IAGSEIGIVG-FGDLGKALRRVLSGFRARIRVFDPWL---PRS---MLEENGV---E-PASLEDVLTKSDFIFVVA--AV 240 (365)
T ss_dssp SSSSEEEEEC-CSHHHHHHHHHHTTSCCEEEEECSSS---CHH---HHHHTTC---E-ECCHHHHHHSCSEEEECS--CS
T ss_pred cCCCEEEEec-CCcccHHHHHhhhhCCCEEEEECCCC---CHH---HHhhcCe---e-eCCHHHHHhcCCEEEEcC--cC
Confidence 6799999999 58999999999999999999887752 222 2344552 2 458999999999999853 11
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..+.+ .-++.+.++..+++++|.-+
T Consensus 241 t~~T~----------~li~~~~l~~mk~gailIN~ 265 (365)
T 4hy3_A 241 TSENK----------RFLGAEAFSSMRRGAAFILL 265 (365)
T ss_dssp SCC-------------CCCHHHHHTSCTTCEEEEC
T ss_pred CHHHH----------hhcCHHHHhcCCCCcEEEEC
Confidence 11111 22456666666666666544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0052 Score=55.84 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++..+.+..+..||++++...+..-.. + +........+++++++++|+|..-.
T Consensus 137 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~-~---------~~~~~~~~~~l~ell~~aDvV~l~l 202 (324)
T 3hg7_A 137 GLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRER-A---------GFDQVYQLPALNKMLAQADVIVSVL 202 (324)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCC-T---------TCSEEECGGGHHHHHHTCSEEEECC
T ss_pred ccccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHh-h---------hhhcccccCCHHHHHhhCCEEEEeC
Confidence 48899999999 58899999999999999998887644111 1 1112233568999999999999853
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.015 Score=54.19 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|++|| .+++..+++..+..||++++...|..-. . +.+++.|. ....++++.++++|+|..-
T Consensus 188 ~l~gktvGIIG-lG~IG~~vA~~l~a~G~~V~~~d~~~~~--~---~~~~~~G~---~~~~~l~ell~~aDvV~l~ 254 (393)
T 2nac_A 188 DLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLP--E---SVEKELNL---TWHATREDMYPVCDVVTLN 254 (393)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCC--H---HHHHHHTC---EECSSHHHHGGGCSEEEEC
T ss_pred cCCCCEEEEEe-ECHHHHHHHHHHHhCCCEEEEEcCCccc--h---hhHhhcCc---eecCCHHHHHhcCCEEEEe
Confidence 48899999999 5899999999999999999887764321 1 22345552 3346899999999999985
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.01 Score=54.61 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=51.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|++|| .+++.++++..+..+|++ ++...+.... . +.+++.| +....++++.++++|+|..-.
T Consensus 161 ~l~g~tvgIIG-~G~IG~~vA~~l~~~G~~~V~~~d~~~~~--~---~~~~~~g---~~~~~~l~ell~~aDvV~l~~ 229 (364)
T 2j6i_A 161 DIEGKTIATIG-AGRIGYRVLERLVPFNPKELLYYDYQALP--K---DAEEKVG---ARRVENIEELVAQADIVTVNA 229 (364)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHGGGCCSEEEEECSSCCC--H---HHHHHTT---EEECSSHHHHHHTCSEEEECC
T ss_pred cCCCCEEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCCccc--h---hHHHhcC---cEecCCHHHHHhcCCEEEECC
Confidence 48999999999 589999999999999996 8877654322 1 1234455 344568999999999999853
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.014 Score=53.46 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=51.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|++|| .+++..+++..+..+|++++...|..- +. .+++.|. ....++++.++++|+|..-
T Consensus 165 ~l~g~tvGIIG-~G~IG~~vA~~l~~~G~~V~~~d~~~~---~~---~~~~~g~---~~~~~l~ell~~aDvV~l~ 230 (347)
T 1mx3_A 165 RIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS---DG---VERALGL---QRVSTLQDLLFHSDCVTLH 230 (347)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC---TT---HHHHHTC---EECSSHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEECCCcc---hh---hHhhcCC---eecCCHHHHHhcCCEEEEc
Confidence 58899999999 589999999999999999988876431 11 1234552 3456899999999999885
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.071 Score=50.26 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=88.0
Q ss_pred CCCcEEeC-CCC------CCChh-HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCC
Q 024871 74 ATVPVING-LTD------YNHPC-QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEP 144 (261)
Q Consensus 74 ~~vPVINa-~~~------~~HPt-Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~ 144 (261)
..+||||. ++. +.|-| |.+.|- +.+..+ .+.|++++++|- +++....+..+..+|++++++-+.
T Consensus 180 L~~Pvi~vnds~tK~~fDn~yGt~~s~~~g--i~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~d---- 252 (435)
T 3gvp_A 180 LCVPAMNVNDSVTKQKFDNLYCCRESILDG--LKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEID---- 252 (435)
T ss_dssp CCSCEEECTTCHHHHHHHTHHHHHHHHHHH--HHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----
T ss_pred CCCCEEEecchhhhhhhhhhhhhHHHHHHH--HHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeCC----
Confidence 57999996 431 12322 445443 344445 589999999995 779999999999999998876542
Q ss_pred CHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC
Q 024871 145 DKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER 224 (261)
Q Consensus 145 ~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r 224 (261)
+.....+...|. + ..+++++++++|+|++.. +. .--++.+.++..++++++.-..= -
T Consensus 253 -p~ra~~A~~~G~---~-v~~Leeal~~ADIVi~at----gt------------~~lI~~e~l~~MK~gailINvgr--g 309 (435)
T 3gvp_A 253 -PICALQACMDGF---R-LVKLNEVIRQVDIVITCT----GN------------KNVVTREHLDRMKNSCIVCNMGH--S 309 (435)
T ss_dssp -HHHHHHHHHTTC---E-ECCHHHHTTTCSEEEECS----SC------------SCSBCHHHHHHSCTTEEEEECSS--T
T ss_pred -hhhhHHHHHcCC---E-eccHHHHHhcCCEEEECC----CC------------cccCCHHHHHhcCCCcEEEEecC--C
Confidence 222233444552 2 357999999999999942 21 23488888999999999887642 2
Q ss_pred Ccccccccc
Q 024871 225 GVEVTEGVI 233 (261)
Q Consensus 225 g~Ev~~~v~ 233 (261)
+.||+-+.+
T Consensus 310 ~~EId~~~L 318 (435)
T 3gvp_A 310 NTEIDVASL 318 (435)
T ss_dssp TTTBTGGGG
T ss_pred CccCCHHHH
Confidence 356665544
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.65 E-value=0.029 Score=51.11 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=52.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHh-cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMAS-VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~-~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|++|| .+++..+++..+. .+|++++...|..-. . +.+.+.|. ...++++++++++|+|..-.
T Consensus 160 ~l~g~~vgIIG-~G~IG~~vA~~l~~~~G~~V~~~d~~~~~--~---~~~~~~g~---~~~~~l~ell~~aDvVil~v 228 (348)
T 2w2k_A 160 NPRGHVLGAVG-LGAIQKEIARKAVHGLGMKLVYYDVAPAD--A---ETEKALGA---ERVDSLEELARRSDCVSVSV 228 (348)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSCCC--H---HHHHHHTC---EECSSHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEEE-ECHHHHHHHHHHHHhcCCEEEEECCCCcc--h---hhHhhcCc---EEeCCHHHHhccCCEEEEeC
Confidence 48999999999 5899999999998 999999888764321 1 22334452 34468999999999998853
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=52.84 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=64.6
Q ss_pred CCCcEEeCCCCCCChh--HHHHHHHHHHHHh-----------------C-CCCCcEEEEEcCCCchHHHHHHHHhcCCcE
Q 024871 74 ATVPVINGLTDYNHPC--QIMADALTIIEHV-----------------G-RLEGTKVVYVGDGNNIVHSWLLMASVIPFH 133 (261)
Q Consensus 74 ~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~-----------------g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~ 133 (261)
.+++|.|.-+....+. .+++=++.+.+++ + .+.|++|++|| .+++..+++..+..+|++
T Consensus 71 ~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG-~G~IG~~~A~~l~~~G~~ 149 (303)
T 1qp8_A 71 PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLG-LGEIGTRVGKILAALGAQ 149 (303)
T ss_dssp TTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEES-CSTHHHHHHHHHHHTTCE
T ss_pred cCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEc-cCHHHHHHHHHHHHCCCE
Confidence 5799999755333333 4455555553321 1 48899999999 589999999999999999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 134 FVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 134 ~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++...|..- .+ +. ....++++.++++|+|..-.
T Consensus 150 V~~~dr~~~--~~---------~~---~~~~~l~ell~~aDvV~l~~ 182 (303)
T 1qp8_A 150 VRGFSRTPK--EG---------PW---RFTNSLEEALREARAAVCAL 182 (303)
T ss_dssp EEEECSSCC--CS---------SS---CCBSCSHHHHTTCSEEEECC
T ss_pred EEEECCCcc--cc---------Cc---ccCCCHHHHHhhCCEEEEeC
Confidence 988876432 11 21 12457899999999998863
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.016 Score=52.72 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++++++| .+++....+..+..||+++....|.. .+. ..+.+. . ..++++.++++|+|..-. +
T Consensus 138 ~l~g~tvGIiG-~G~IG~~va~~~~~fg~~v~~~d~~~---~~~----~~~~~~---~-~~~l~ell~~sDivslh~--P 203 (334)
T 3kb6_A 138 ELNRLTLGVIG-TGRIGSRVAMYGLAFGMKVLCYDVVK---RED----LKEKGC---V-YTSLDELLKESDVISLHV--P 203 (334)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC---CHH----HHHTTC---E-ECCHHHHHHHCSEEEECC--C
T ss_pred eecCcEEEEEC-cchHHHHHHHhhcccCceeeecCCcc---chh----hhhcCc---e-ecCHHHHHhhCCEEEEcC--C
Confidence 36889999999 48899999999999999998887642 222 223442 2 458999999999998864 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVT 229 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~ 229 (261)
...+. ..-|+++.++..|+++++.-.. ||.=|+
T Consensus 204 lt~~T----------~~li~~~~l~~mk~~a~lIN~a---RG~iVd 236 (334)
T 3kb6_A 204 YTKET----------HHMINEERISLMKDGVYLINTA---RGKVVD 236 (334)
T ss_dssp CCTTT----------TTCBCHHHHHHSCTTEEEEECS---CGGGBC
T ss_pred CChhh----------ccCcCHHHHhhcCCCeEEEecC---cccccc
Confidence 22221 2458999999999999988753 554443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0073 Score=53.97 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|+||+++| .+++..+++..+..+|++++...|..-... .+...++++++++++|+|..-. +
T Consensus 119 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-------------~~~~~~~l~ell~~aDiV~l~~--P 182 (290)
T 3gvx_A 119 LLYGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-------------VDVISESPADLFRQSDFVLIAI--P 182 (290)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTT-------------CSEECSSHHHHHHHCSEEEECC--C
T ss_pred eeecchheeec-cCchhHHHHHHHHhhCcEEEEEeccccccc-------------cccccCChHHHhhccCeEEEEe--e
Confidence 37899999999 589999999999999999998877532211 1244668999999999999864 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..... ..-++.+.++..+++++|..+
T Consensus 183 ~t~~t----------~~li~~~~l~~mk~gailIN~ 208 (290)
T 3gvx_A 183 LTDKT----------RGMVNSRLLANARKNLTIVNV 208 (290)
T ss_dssp CCTTT----------TTCBSHHHHTTCCTTCEEEEC
T ss_pred ccccc----------hhhhhHHHHhhhhcCceEEEe
Confidence 11111 122455666666666666654
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.03 Score=50.48 Aligned_cols=67 Identities=6% Similarity=0.018 Sum_probs=51.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC-CCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP-KGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P-~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|++|| .+++.++++..+..+|++++...| .. ... .+++.|. ...++++++++++|+|..-.
T Consensus 143 ~l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~---~~~---~~~~~g~---~~~~~l~ell~~aDvVil~~ 210 (320)
T 1gdh_A 143 KLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRA---SSS---DEASYQA---TFHDSLDSLLSVSQFFSLNA 210 (320)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC---CHH---HHHHHTC---EECSSHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCc---Chh---hhhhcCc---EEcCCHHHHHhhCCEEEEec
Confidence 47889999999 589999999999999999988876 43 221 2445563 34558999999999998853
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=53.52 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=49.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++..+.+..+..||++++...|..-... +........++++.++++|+|..-.
T Consensus 134 ~l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------~~~~~~~~~~l~ell~~aDvV~l~l 199 (324)
T 3evt_A 134 TLTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPAD----------HFHETVAFTATADALATANFIVNAL 199 (324)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCT----------TCSEEEEGGGCHHHHHHCSEEEECC
T ss_pred cccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhH----------hHhhccccCCHHHHHhhCCEEEEcC
Confidence 47899999999 589999999999999999988766432211 1122233467899999999999853
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=53.43 Aligned_cols=182 Identities=12% Similarity=0.002 Sum_probs=104.3
Q ss_pred eccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeC---Ccc-hHHHHh--------
Q 024871 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVF---GHQ-DILDLA-------- 71 (261)
Q Consensus 4 lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~---~~~-~~~~~a-------- 71 (261)
+|+.......-.|+.-....|..+.+.+... . .|. +..+ .=+|++++|.. ..+ .+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~-~~~----~~~~-~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~ 75 (343)
T 2yq5_A 5 AMYNVSPIEVPYIEDWAKKNDVEIKTTDQAL---T-SAT----VDLA-EGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG 75 (343)
T ss_dssp EEESCCGGGHHHHHHHHHHHTCEEEEESSCC---S-TTG----GGGG-TTCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred EEEecCcccHHHHHHHHHhCCeEEEECCCCC---C-HHH----HHHh-cCCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence 4555555556667766667787777664321 1 122 1111 22688888742 233 333332
Q ss_pred --------------hhCCCcEEeCCCCCCChh--HHHHHHHHHHHH----------hC-----------CCCCcEEEEEc
Q 024871 72 --------------KFATVPVINGLTDYNHPC--QIMADALTIIEH----------VG-----------RLEGTKVVYVG 114 (261)
Q Consensus 72 --------------~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~----------~g-----------~l~~~~i~~vG 114 (261)
+..+|+|.|+-+-...+. .+++=++.+.++ .| .+.|++|++||
T Consensus 76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG 155 (343)
T 2yq5_A 76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG 155 (343)
T ss_dssp ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence 123678988754222222 223333433321 12 36789999999
Q ss_pred CCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHH
Q 024871 115 DGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRK 194 (261)
Q Consensus 115 d~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~ 194 (261)
.+++..+++..+..||++++...|..- +. .+.+ +.. .+++++++++|+|..-. +...+.
T Consensus 156 -lG~IG~~vA~~l~~~G~~V~~~d~~~~---~~-----~~~~---~~~-~~l~ell~~aDvV~l~~--Plt~~t------ 214 (343)
T 2yq5_A 156 -VGHIGSAVAEIFSAMGAKVIAYDVAYN---PE-----FEPF---LTY-TDFDTVLKEADIVSLHT--PLFPST------ 214 (343)
T ss_dssp -CSHHHHHHHHHHHHTTCEEEEECSSCC---GG-----GTTT---CEE-CCHHHHHHHCSEEEECC--CCCTTT------
T ss_pred -cCHHHHHHHHHHhhCCCEEEEECCChh---hh-----hhcc---ccc-cCHHHHHhcCCEEEEcC--CCCHHH------
Confidence 589999999999999999998877431 11 0112 232 38999999999999864 111111
Q ss_pred hhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 195 QAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 195 ~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..-++.+.++..+++++|.-+
T Consensus 215 ----~~li~~~~l~~mk~gailIN~ 235 (343)
T 2yq5_A 215 ----ENMIGEKQLKEMKKSAYLINC 235 (343)
T ss_dssp ----TTCBCHHHHHHSCTTCEEEEC
T ss_pred ----HHHhhHHHHhhCCCCcEEEEC
Confidence 123566666666667666655
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.079 Score=47.86 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++..+++..+..+|++++...|.. .. +.+++.|. . ..+++++++++|+|..-.
T Consensus 147 ~l~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~---~~---~~~~~~g~---~-~~~l~~~l~~aDvVil~v 212 (334)
T 2dbq_A 147 DVYGKTIGIIG-LGRIGQAIAKRAKGFNMRILYYSRTR---KE---EVERELNA---E-FKPLEDLLRESDFVVLAV 212 (334)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC---CH---HHHHHHCC---E-ECCHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEECCCc---ch---hhHhhcCc---c-cCCHHHHHhhCCEEEECC
Confidence 48899999999 58999999999999999998887643 12 22345553 3 258999999999998853
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.015 Score=52.15 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=51.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++.++++..+..+|++++...|.. .. +.+.+.|. .. .+++++++++|+|..-.
T Consensus 139 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~---~~---~~~~~~g~---~~-~~l~ell~~aDvV~l~~ 204 (307)
T 1wwk_A 139 ELEGKTIGIIG-FGRIGYQVAKIANALGMNILLYDPYP---NE---ERAKEVNG---KF-VDLETLLKESDVVTIHV 204 (307)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC---CH---HHHHHTTC---EE-CCHHHHHHHCSEEEECC
T ss_pred ccCCceEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCC---Ch---hhHhhcCc---cc-cCHHHHHhhCCEEEEec
Confidence 47899999999 58999999999999999998887743 22 23445563 22 38999999999998853
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.023 Score=51.33 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|- +++...++..+..+|++++...|..-. . +.+.+.| +... +++++++++|+|..-.
T Consensus 152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~--~---~~~~~~g---~~~~-~l~e~l~~aDvVi~~v 218 (330)
T 2gcg_A 152 GLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPR--P---EEAAEFQ---AEFV-STPELAAQSDFIVVAC 218 (330)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCC--H---HHHHTTT---CEEC-CHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc--h---hHHHhcC---ceeC-CHHHHHhhCCEEEEeC
Confidence 378899999994 899999999999999998877764221 1 2233444 2334 8899999999998854
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.04 Score=49.99 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|++|| .+++...++..+..+|++++...|..-.. .| +....+++++++++|+|..-.
T Consensus 161 ~l~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~dr~~~~~----------~g---~~~~~~l~ell~~aDvVil~v 223 (333)
T 3ba1_A 161 KFSGKRVGIIG-LGRIGLAVAERAEAFDCPISYFSRSKKPN----------TN---YTYYGSVVELASNSDILVVAC 223 (333)
T ss_dssp CCTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSSCCTT----------CC---SEEESCHHHHHHTCSEEEECS
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCchhc----------cC---ceecCCHHHHHhcCCEEEEec
Confidence 47899999999 58999999999999999988877643211 13 234678999999999998853
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.024 Score=50.88 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=47.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.+.|++|++|| .+++..+++..+..+|++++...|..-... +. ..++++.++++|+|..-
T Consensus 141 ~l~g~~vgIIG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--------------~~-~~~l~ell~~aDvV~l~ 200 (311)
T 2cuk_A 141 DLQGLTLGLVG-MGRIGQAVAKRALAFGMRVVYHARTPKPLP--------------YP-FLSLEELLKEADVVSLH 200 (311)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSS--------------SC-BCCHHHHHHHCSEEEEC
T ss_pred CCCCCEEEEEE-ECHHHHHHHHHHHHCCCEEEEECCCCcccc--------------cc-cCCHHHHHhhCCEEEEe
Confidence 47889999999 589999999999999999988876432111 11 35789999999999885
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.14 Score=45.13 Aligned_cols=130 Identities=12% Similarity=0.177 Sum_probs=84.7
Q ss_pred cchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHH--------HHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEE
Q 024871 64 HQDILDLAKFATVPVINGLTDYNHPCQIMADALT--------IIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHF 134 (261)
Q Consensus 64 ~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~T--------i~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~ 134 (261)
+..+.+.+...+++|.|..+. +.-+++--+. ..+..+ .+.|++|+++|- +++....+..+..+|+++
T Consensus 108 ~~d~~~~~~~~gi~v~~~~~~---~~v~~~r~~~~~~g~~~~~~~~~~~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V 183 (300)
T 2rir_A 108 NAYLENIAAQAKRKLVKLFER---DDIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGL-GRTGMTIARTFAALGANV 183 (300)
T ss_dssp CHHHHHHHHHTTCCEEEGGGS---HHHHHHHHHHHHHHHHHHHHHTCSSCSTTSEEEEECC-SHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHCCCEEEeecCC---CceEEEcCccHHHHHHHHHHHhcCCCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEE
Confidence 334356667788999997542 2212221010 112233 599999999994 889999999999999998
Q ss_pred EEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCc
Q 024871 135 VCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKA 214 (261)
Q Consensus 135 ~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~ 214 (261)
++..|.. +-.+.+.+.|. ......++++.++++|+|+... .. .-++++.++..++++
T Consensus 184 ~~~d~~~-----~~~~~~~~~g~-~~~~~~~l~~~l~~aDvVi~~~----p~-------------~~i~~~~~~~mk~g~ 240 (300)
T 2rir_A 184 KVGARSS-----AHLARITEMGL-VPFHTDELKEHVKDIDICINTI----PS-------------MILNQTVLSSMTPKT 240 (300)
T ss_dssp EEEESSH-----HHHHHHHHTTC-EEEEGGGHHHHSTTCSEEEECC----SS-------------CCBCHHHHTTSCTTC
T ss_pred EEEECCH-----HHHHHHHHCCC-eEEchhhHHHHhhCCCEEEECC----Ch-------------hhhCHHHHHhCCCCC
Confidence 8877632 22233344553 2222367899999999999974 11 235666777778888
Q ss_pred EEeeCC
Q 024871 215 YFMHCL 220 (261)
Q Consensus 215 ~~mH~l 220 (261)
++.-+.
T Consensus 241 ~lin~a 246 (300)
T 2rir_A 241 LILDLA 246 (300)
T ss_dssp EEEECS
T ss_pred EEEEEe
Confidence 888774
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.1 Score=50.12 Aligned_cols=100 Identities=22% Similarity=0.193 Sum_probs=67.6
Q ss_pred HhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHH-----------------h-C-CCCCcEEEEEcCCCchHHHHHHHHh
Q 024871 70 LAKFATVPVINGLTDYNHPC--QIMADALTIIEH-----------------V-G-RLEGTKVVYVGDGNNIVHSWLLMAS 128 (261)
Q Consensus 70 ~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~-----------------~-g-~l~~~~i~~vGd~~~v~~S~~~~~~ 128 (261)
.+...+|+|.|+-+....++ .+++=++.+.++ + | .+.|++|++|| .+++..+++..+.
T Consensus 84 ~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG-~G~IG~~vA~~l~ 162 (529)
T 1ygy_A 84 AATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVG-LGRIGQLVAQRIA 162 (529)
T ss_dssp HHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEEC-CSHHHHHHHHHHH
T ss_pred HHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEe-eCHHHHHHHHHHH
Confidence 34556789999754332222 233334443322 1 2 47889999999 5899999999999
Q ss_pred cCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 129 VIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 129 ~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+|++++...|.. .. +.+.+.|. ... +++++++++|+|..-.
T Consensus 163 ~~G~~V~~~d~~~---~~---~~a~~~g~---~~~-~l~e~~~~aDvV~l~~ 204 (529)
T 1ygy_A 163 AFGAYVVAYDPYV---SP---ARAAQLGI---ELL-SLDDLLARADFISVHL 204 (529)
T ss_dssp TTTCEEEEECTTS---CH---HHHHHHTC---EEC-CHHHHHHHCSEEEECC
T ss_pred hCCCEEEEECCCC---Ch---hHHHhcCc---EEc-CHHHHHhcCCEEEECC
Confidence 9999998887643 22 23555663 223 8999999999998853
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.045 Score=50.87 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=96.8
Q ss_pred HHHHHHHHhhhc---cEEEEeeCCc-ch---HHHHhhhCCCcEEeCCCCCCChh--HHHHHHHHHHHHhC-CCCCcEEEE
Q 024871 43 TRDAARVLCRYN---DIIMARVFGH-QD---ILDLAKFATVPVINGLTDYNHPC--QIMADALTIIEHVG-RLEGTKVVY 112 (261)
Q Consensus 43 ~~Dt~~~ls~~~---D~iv~R~~~~-~~---~~~~a~~~~vPVINa~~~~~HPt--Q~L~Dl~Ti~e~~g-~l~~~~i~~ 112 (261)
+++.+..+.... -.|=+-.+.. .. ++++-+..++||+| |..|=| =+++=++.-.+..| ++++.||++
T Consensus 121 ~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~~~Ipvf~---DDiqGTasV~lAal~~A~~i~g~~l~~~kVVv 197 (388)
T 1vl6_A 121 EEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEEMNIPVFH---DDQQGTAVVVSAAFLNALKLTEKKIEEVKVVV 197 (388)
T ss_dssp HHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEE---HHHHHHHHHHHHHHHHHHHHHTCCTTTCEEEE
T ss_pred HHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhhcCcceec---cccccHHHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 566655555432 3444433322 22 33444456899999 344533 34555666667777 799999999
Q ss_pred EcCCCchHHHHHHHHhcCCc-EEEEeCCCCCC--------CCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 113 VGDGNNIVHSWLLMASVIPF-HFVCACPKGFE--------PDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 113 vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~--------~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
+|-+ .+.-..+..+...|. +++++--+|+- +.+.-...+++.+. .....+++|+++++||++..+
T Consensus 198 ~GAG-aAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~--~~~~~~L~eav~~ADVlIG~S--- 271 (388)
T 1vl6_A 198 NGIG-AAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP--ERLSGDLETALEGADFFIGVS--- 271 (388)
T ss_dssp ECCS-HHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT--TCCCSCHHHHHTTCSEEEECS---
T ss_pred ECCC-HHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc--cCchhhHHHHHccCCEEEEeC---
Confidence 9975 222222233333476 77777655321 33323344554431 122567999999999999874
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC-CCCCCCccccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC-LPAERGVEVTEGV 232 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~-lP~~rg~Ev~~~v 232 (261)
.+.-+|+++++..+++.+|+-. =|. .|++.+.
T Consensus 272 --------------ap~l~t~emVk~Ma~~pIIfalSNPt---~E~~p~~ 304 (388)
T 1vl6_A 272 --------------RGNILKPEWIKKMSRKPVIFALANPV---PEIDPEL 304 (388)
T ss_dssp --------------CSSCSCHHHHTTSCSSCEEEECCSSS---CSSCHHH
T ss_pred --------------CCCccCHHHHHhcCCCCEEEEcCCCC---CCCCHHH
Confidence 1456899999888777776543 232 4666543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.087 Score=47.69 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++.++++..+..||++++...|..-... +.+ +. ..++++.++++|+|..-.
T Consensus 142 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--------~~~---~~-~~~l~ell~~aDvV~~~~ 205 (333)
T 1dxy_A 142 ELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGD--------HPD---FD-YVSLEDLFKQSDVIDLHV 205 (333)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSC--------CTT---CE-ECCHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCcchhh--------Hhc---cc-cCCHHHHHhcCCEEEEcC
Confidence 48899999999 589999999999999999998877432110 011 22 348999999999999864
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.12 Score=46.65 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=65.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+.|++|+++| .+++.++++..+..+|++++...|..-.. + +.+ +. ..++++.++++|+|..-. +.
T Consensus 144 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-------~-~~~---~~-~~~l~ell~~aDvV~~~~--p~ 208 (331)
T 1xdw_A 144 VRNCTVGVVG-LGRIGRVAAQIFHGMGATVIGEDVFEIKG-------I-EDY---CT-QVSLDEVLEKSDIITIHA--PY 208 (331)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCS-------C-TTT---CE-ECCHHHHHHHCSEEEECC--CC
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCccHH-------H-Hhc---cc-cCCHHHHHhhCCEEEEec--CC
Confidence 6789999999 58999999999999999998887643211 0 111 22 348999999999999853 11
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
..+. ..-++++.++..++++++..+.
T Consensus 209 t~~t----------~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 209 IKEN----------GAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp CTTT----------CCSBCHHHHHTSCTTEEEEECS
T ss_pred chHH----------HHHhCHHHHhhCCCCcEEEECC
Confidence 1111 1336788888888888888876
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.059 Score=48.41 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch----HHHHhhhC-------CCcEE
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD----ILDLAKFA-------TVPVI 79 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~----~~~~a~~~-------~vPVI 79 (261)
+=..++..+|...... +.+.+ .|.+.+.+.-|+.= +|.|.+-.+-... -..+-+.- +.=-+
T Consensus 55 ~k~k~~~~~Gi~~~~~~lp~~~s----~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~ 130 (301)
T 1a4i_A 55 VKLKAAEEIGIKATHIKLPRTTT----ESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSI 130 (301)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCC----HHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHH
T ss_pred HHHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChh
Confidence 3456899999987654 33322 44566666666653 5888888754322 22221111 11123
Q ss_pred eC----CC---CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH
Q 024871 80 NG----LT---DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 80 Na----~~---~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~ 151 (261)
|. .+ ...-||-+.+ ++.+.++.+ +++|++++++|-.+.|..-++.++...|.+++++.-
T Consensus 131 N~G~l~~g~~~~~~~PcTp~g-i~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs------------ 197 (301)
T 1a4i_A 131 NAGRLARGDLNDCFIPCTPKG-CLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS------------ 197 (301)
T ss_dssp HHHHHHTTCCSSCCCCHHHHH-HHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT------------
T ss_pred hHHHHhcCCCCCCccCchHHH-HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEEC------------
Confidence 31 12 4578999999 888888887 699999999998767888888888889999988841
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
. +.|+++.+++||+|++-. +.. .+ |+.+++ ++.+++.-..
T Consensus 198 ------~----t~~L~~~~~~ADIVI~Av----g~p-----------~~-I~~~~v---k~GavVIDVg 237 (301)
T 1a4i_A 198 ------K----TAHLDEEVNKGDILVVAT----GQP-----------EM-VKGEWI---KPGAIVIDCG 237 (301)
T ss_dssp ------T----CSSHHHHHTTCSEEEECC----CCT-----------TC-BCGGGS---CTTCEEEECC
T ss_pred ------C----cccHHHHhccCCEEEECC----CCc-----------cc-CCHHHc---CCCcEEEEcc
Confidence 1 468999999999999975 321 13 777775 4777877664
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.1 Score=46.43 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=108.0
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh------C-CCcEEe-C
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF------A-TVPVIN-G 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~------~-~vPVIN-a 81 (261)
=..++..+|..... ++.+.+ .|.+.+.+.-|+.= +|.|.+-.+-...+ ..+-+. . +.=-+| |
T Consensus 53 k~k~~~~~Gi~~~~~~lp~~~s----~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~KDVDG~~p~n~g 128 (281)
T 2c2x_A 53 KHADCAKVGITSIRRDLPADIS----TATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLG 128 (281)
T ss_dssp HHHHHHHHTCEEEEEEECTTCC----HHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGBTTSCCHHHHH
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCccCCccCCChhhHH
Confidence 45689999998765 433322 45566677766664 58888887643221 111111 0 111233 1
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcC--CcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~--g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
+....-||-+.+ ++.+.++.+ +++|++++++|-.+.|..-++..+... |.+++++.-.
T Consensus 129 ~l~~g~~~~~PcTp~g-i~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~-------------- 193 (281)
T 2c2x_A 129 RLVLGTPAPLPCTPRG-IVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG-------------- 193 (281)
T ss_dssp HHHHTCCCCCCHHHHH-HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT--------------
T ss_pred HHhCCCCCCCCChHHH-HHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc--------------
Confidence 124688999999 888888887 799999999997666788888888787 8999887411
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.|+.+.+++||+|++-. +.. .| |+.+++ ++.++++-..
T Consensus 194 --------t~~L~~~~~~ADIVI~Av----g~p-----------~~-I~~~~v---k~GavVIDVg 232 (281)
T 2c2x_A 194 --------TRDLPALTRQADIVVAAV----GVA-----------HL-LTADMV---RPGAAVIDVG 232 (281)
T ss_dssp --------CSCHHHHHTTCSEEEECS----CCT-----------TC-BCGGGS---CTTCEEEECC
T ss_pred --------hhHHHHHHhhCCEEEECC----CCC-----------cc-cCHHHc---CCCcEEEEcc
Confidence 368999999999999986 421 24 787775 5677777654
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.099 Score=47.27 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=49.1
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++.++++..+..+|++++...|.. .+. +++ +. ...+++++.++++|+|..-.
T Consensus 143 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~d~~~---~~~----~~~-~~---~~~~~l~ell~~aDvV~l~~ 207 (333)
T 1j4a_A 143 EVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFR---NPE----LEK-KG---YYVDSLDDLYKQADVISLHV 207 (333)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC---CHH----HHH-TT---CBCSCHHHHHHHCSEEEECS
T ss_pred cCCCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCc---chh----HHh-hC---eecCCHHHHHhhCCEEEEcC
Confidence 37789999999 58999999999999999998887643 222 122 21 22358999999999999853
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.07 Score=47.66 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=108.6
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEeC-
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVINa- 81 (261)
=..++..+|..... +..+.+ .|.+.+.+.-|+.= +|.|.+..+-...+ ..+-+.- +.=-+|.
T Consensus 54 k~k~~~~~Gi~~~~~~lp~~~s----~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~p~n~g 129 (288)
T 1b0a_A 54 KRKACEEVGFVSRSYDLPETTS----EAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVG 129 (288)
T ss_dssp HHHHHHHHTCEECCEEECTTCC----HHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCSHHHHH
T ss_pred HHHHHHHcCCEEEEEECCCCCC----HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCCccchh
Confidence 45688999998754 433322 35566666666654 58898887643322 2221111 1112331
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+....-||-+.+ ++.+.++++ +++|++++++|-.+.|...++.++...|.+++++.-.
T Consensus 130 ~l~~g~~~~~PcTp~g-i~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---------------- 192 (288)
T 1b0a_A 130 RLCQRAPRLRPCTPRG-IVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---------------- 192 (288)
T ss_dssp HHHTTCCSSCCHHHHH-HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS----------------
T ss_pred HHhCCCCCCCCCcHHH-HHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC----------------
Confidence 124678999999 888888877 6999999999986678899988888899999988411
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.|+++.+++||+|++.. +.. .+ |+.+++ ++.+++.-..
T Consensus 193 ------t~~L~~~~~~ADIVI~Av----g~p-----------~l-I~~~~v---k~GavVIDVg 231 (288)
T 1b0a_A 193 ------TKNLRHHVENADLLIVAV----GKP-----------GF-IPGDWI---KEGAIVIDVG 231 (288)
T ss_dssp ------CSCHHHHHHHCSEEEECS----CCT-----------TC-BCTTTS---CTTCEEEECC
T ss_pred ------chhHHHHhccCCEEEECC----CCc-----------Cc-CCHHHc---CCCcEEEEcc
Confidence 368899999999999986 321 13 777765 5777877654
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.1 Score=47.16 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++| .+++..+++..+..+|++++...|.. .. +.+.+.| +.. .+++++++++|+|..-.
T Consensus 143 ~l~g~~vgIIG-~G~iG~~vA~~l~~~G~~V~~~d~~~---~~---~~~~~~g---~~~-~~l~e~l~~aDiVil~v 208 (333)
T 2d0i_A 143 SLYGKKVGILG-MGAIGKAIARRLIPFGVKLYYWSRHR---KV---NVEKELK---ARY-MDIDELLEKSDIVILAL 208 (333)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSC---CH---HHHHHHT---EEE-CCHHHHHHHCSEEEECC
T ss_pred CCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEEEECCCc---ch---hhhhhcC---cee-cCHHHHHhhCCEEEEcC
Confidence 58899999999 58999999999999999998877643 11 2234455 233 38999999999998853
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.14 Score=45.60 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch--HHHHhhh------C-CCcEEe-
Q 024871 15 SFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD--ILDLAKF------A-TVPVIN- 80 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~--~~~~a~~------~-~vPVIN- 80 (261)
+=..++.++|...... +.+. ..|.+.+.++-|+.- .|.|.+-.+-... -..+-+. . +.=-+|
T Consensus 54 ~k~k~~~~~Gi~~~~~~lp~~~----s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~~~N~ 129 (285)
T 3l07_A 54 SKEKACAQVGIDSQVITLPEHT----TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNV 129 (285)
T ss_dssp HHHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCC----CHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhe
Confidence 3457899999987654 3332 245677777777765 6788887763321 1222111 1 122234
Q ss_pred C----CC-CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 81 G----LT-DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 81 a----~~-~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
| +. ....||-..+=+ .+.++.+ .++|++++++|-.+-|...++.++...|++++++.-.
T Consensus 130 G~l~~g~~~~~~PcTp~gv~-~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------- 194 (285)
T 3l07_A 130 GRLQLRDKKCLESCTPKGIM-TMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------- 194 (285)
T ss_dssp HHHHHTCTTCCCCHHHHHHH-HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------
T ss_pred eehhcCCCCCCCCCCHHHHH-HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------
Confidence 1 13 568999998855 5555554 7999999999976668888888888889999887421
Q ss_pred hCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 155 AGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 155 ~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.++++.+++||+|++.. +. ..+ |+.+++ +++++++-..
T Consensus 195 --------t~~L~~~~~~ADIVI~Av----g~-----------p~~-I~~~~v---k~GavVIDvg 233 (285)
T 3l07_A 195 --------TTDLKSHTTKADILIVAV----GK-----------PNF-ITADMV---KEGAVVIDVG 233 (285)
T ss_dssp --------CSSHHHHHTTCSEEEECC----CC-----------TTC-BCGGGS---CTTCEEEECC
T ss_pred --------chhHHHhcccCCEEEECC----CC-----------CCC-CCHHHc---CCCcEEEEec
Confidence 458899999999999985 32 123 777765 5777877654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.078 Score=49.14 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE----------------------
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI---------------------- 162 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~---------------------- 162 (261)
+.+.||+++|- +.+....+..+..+|++++.+.+. ++.++.+++.|. .+..
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~-----~~~l~~~~~lGa-~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVR-----PEVAEQVRSVGA-QWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSS-----GGGHHHHHHTTC-EECCCC-------------CHHHHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCC-eEEeccccccccccchhhhhHHHHhh
Confidence 48899999996 789999999999999998876543 233455566653 2210
Q ss_pred -EcCHHHHhCCCCEEEEec-ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 163 -TNDPKEVVQGADVVYSDV-WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 163 -~~d~~~a~~~aDviy~~~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..+++++++++|+|++.. ++ +. ..+.-|++++++..+++++|.-.
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iP--g~----------~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVP--GR----------PAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCT--TS----------CCCCCBCHHHHHTSCTTCEEEET
T ss_pred hHHHHHHHHhcCCEEEECCCCC--Cc----------ccceeecHHHHhcCCCCcEEEEE
Confidence 135678999999999864 22 11 13567899999999998887654
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.17 Score=45.11 Aligned_cols=159 Identities=15% Similarity=0.104 Sum_probs=107.2
Q ss_pred HHHHHHhcCCeEEEe--CCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcc-----hH-HHHh--hhC-CCcEEeC-
Q 024871 16 FETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQ-----DI-LDLA--KFA-TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l--~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~-----~~-~~~a--~~~-~vPVINa- 81 (261)
=..++.++|...... +.+. ..|.+.+.++-++.- .|.|.+-.+-.. .+ +.+. |-. +.=-+|.
T Consensus 54 k~k~~~~~Gi~~~~~~lp~~~----s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~~~N~g 129 (285)
T 3p2o_A 54 KAKACEECGIKSLVYHLNENI----TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVG 129 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHH
T ss_pred HHHHHHHcCCeEEEEECCCCC----CHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCCHhhhh
Confidence 456899999987654 3332 245677777777764 678888776332 22 2221 111 2223451
Q ss_pred ---CC-CC-CChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh
Q 024871 82 ---LT-DY-NHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 82 ---~~-~~-~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
.+ .. ..||-... ++.+.++.+ .++|++++++|-.+-|..-++.++...|++++++.-.
T Consensus 130 ~l~~g~~~g~~PcTp~g-v~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--------------- 193 (285)
T 3p2o_A 130 YLNLGLESGFLPCTPLG-VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------------- 193 (285)
T ss_dssp HHHTTCCSSCCCHHHHH-HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------
T ss_pred hhhcCCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---------------
Confidence 12 34 79999888 456666665 6999999999976668888888888889999888421
Q ss_pred CCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 156 GISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 156 g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.++++.+++||+|++.. +. ..+ |+.+++ +++++++-..
T Consensus 194 -------t~~L~~~~~~ADIVI~Av----g~-----------p~~-I~~~~v---k~GavVIDVg 232 (285)
T 3p2o_A 194 -------TKDLSLYTRQADLIIVAA----GC-----------VNL-LRSDMV---KEGVIVVDVG 232 (285)
T ss_dssp -------CSCHHHHHTTCSEEEECS----SC-----------TTC-BCGGGS---CTTEEEEECC
T ss_pred -------chhHHHHhhcCCEEEECC----CC-----------CCc-CCHHHc---CCCeEEEEec
Confidence 458899999999999985 32 123 777765 6778877654
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.096 Score=46.47 Aligned_cols=157 Identities=14% Similarity=0.086 Sum_probs=101.8
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhhC-------CCcEEe-C
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKFA-------TVPVIN-G 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~~-------~vPVIN-a 81 (261)
=..++.++|. ... ++.+.+ .|.+.+.++-|+.- +|.|.+-.+-...+ ..+-+.- +.--+| |
T Consensus 48 k~k~~~~~Gi-~~~~~lp~~~s----~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~KDVDG~~p~n~G 122 (276)
T 3ngx_A 48 KIRRGKKIGI-AVDLEKYDDIS----MKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQG 122 (276)
T ss_dssp HHHHHHHHTC-EEEEEEESSCC----HHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGGGBTTCCSHHHHH
T ss_pred HHHHHHHCCe-EEEEECCCCCC----HHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCCCcccCCCccchh
Confidence 4568899999 544 333322 34566666666654 67888877643322 2221111 111233 1
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
+.....||-..+=+ .+.|+++ ++|++++++|-.+.+...++..+...|++++++.-.
T Consensus 123 ~l~~g~~~~~PcTp~gv~-~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~----------------- 183 (276)
T 3ngx_A 123 LIALNREFLVPATPRAVI-DIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK----------------- 183 (276)
T ss_dssp HHHTTCCSSCCHHHHHHH-HHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-----------------
T ss_pred hhhcCCCCCCCCcHHHHH-HHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-----------------
Confidence 13456788666644 5556667 999999999986778888888888889999888421
Q ss_pred CeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 158 SKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.++++.+++||+|++.. +. +--|+.+++ ++++++.-..
T Consensus 184 -----t~~L~~~~~~ADIVI~Av----g~------------p~~I~~~~v---k~GavVIDvg 222 (276)
T 3ngx_A 184 -----TKDIGSMTRSSKIVVVAV----GR------------PGFLNREMV---TPGSVVIDVG 222 (276)
T ss_dssp -----CSCHHHHHHHSSEEEECS----SC------------TTCBCGGGC---CTTCEEEECC
T ss_pred -----cccHHHhhccCCEEEECC----CC------------CccccHhhc---cCCcEEEEec
Confidence 468899999999999975 32 112666654 6777777664
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.057 Score=50.46 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=68.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE--------------E-------
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE--------------I------- 162 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~--------------~------- 162 (261)
++.+.||+++|- +.+....+..+..+|++++.+.+.. ..++.+++.|...+. +
T Consensus 187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~-----~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~ 260 (405)
T 4dio_A 187 TVPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRP-----AAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGE 260 (405)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSST-----THHHHHHHTTCEECCCCC-----------------CH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHcCCceeecccccccccccccchhhhcchh
Confidence 367899999996 7889999999999999988765432 234455565531111 1
Q ss_pred -----EcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 163 -----TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 163 -----~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
..+++++++++|||++..-.. +. ..+.-+++++++..+++++|.=.
T Consensus 261 ~~~~~~~~l~e~l~~aDVVI~tvlip-g~----------~ap~Lvt~emv~~Mk~GsVIVDv 311 (405)
T 4dio_A 261 YQVKQAALVAEHIAKQDIVITTALIP-GR----------PAPRLVTREMLDSMKPGSVVVDL 311 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCS-SS----------CCCCCBCHHHHTTSCTTCEEEET
T ss_pred hhhhhHhHHHHHhcCCCEEEECCcCC-CC----------CCCEEecHHHHhcCCCCCEEEEE
Confidence 125788999999999874111 21 13566899999999998887754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.19 Score=44.77 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch--HHHHhhh------C-CCcEEeC-
Q 024871 15 SFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD--ILDLAKF------A-TVPVING- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~--~~~~a~~------~-~vPVINa- 81 (261)
+=..++..+|....... |.++ ..|.+.+.++-|+.- .|.|.+-.+-... -..+-+. . +.=-+|.
T Consensus 55 ~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~g 131 (286)
T 4a5o_A 55 HKRKDCEEVGFLSQAYDLPAET---SQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIG 131 (286)
T ss_dssp HHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCCSHHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccCChhhhH
Confidence 34678999999876543 2222 245677777777764 5788887764331 1122111 1 1222341
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+.....||-... ++.+.++++ .++|++++++|-.+.|..-++.++...|++++++.-.
T Consensus 132 ~l~~g~~~~~PcTp~g-v~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~---------------- 194 (286)
T 4a5o_A 132 RLAQRMPLLRPCTPKG-IMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF---------------- 194 (286)
T ss_dssp HHHTTCCSSCCHHHHH-HHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT----------------
T ss_pred HHhcCCCCCCCCCHHH-HHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC----------------
Confidence 235678998888 566677765 6999999999986778999988888899999988421
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.++++.+++||+|++.. +.. .+ |+.+++ +++++++-..
T Consensus 195 ------T~~L~~~~~~ADIVI~Av----g~p-----------~~-I~~~~v---k~GavVIDvg 233 (286)
T 4a5o_A 195 ------TRDLADHVSRADLVVVAA----GKP-----------GL-VKGEWI---KEGAIVIDVG 233 (286)
T ss_dssp ------CSCHHHHHHTCSEEEECC----CCT-----------TC-BCGGGS---CTTCEEEECC
T ss_pred ------CcCHHHHhccCCEEEECC----CCC-----------CC-CCHHHc---CCCeEEEEec
Confidence 358899999999999985 321 13 777765 6788887665
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.15 Score=45.51 Aligned_cols=81 Identities=21% Similarity=0.081 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 86 NHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 86 ~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
.|+++.+.++ ......||++|| .+++..|++..+...|. +++...+ +++.++.+++.|.. -..+
T Consensus 19 ~~~~~~~~~~-------~~~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr-----~~~~~~~a~~~G~~-~~~~ 84 (314)
T 3ggo_A 19 SHMKNIIKIL-------KSLSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDI-----NPESISKAVDLGII-DEGT 84 (314)
T ss_dssp -----------------CCCSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECS-----CHHHHHHHHHTTSC-SEEE
T ss_pred cCcCcCCchh-------hhcCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEEC-----CHHHHHHHHHCCCc-chhc
Confidence 4556555542 223457999999 69999999999988888 8776644 45566677777732 2457
Q ss_pred cCHHH-HhCCCCEEEEec
Q 024871 164 NDPKE-VVQGADVVYSDV 180 (261)
Q Consensus 164 ~d~~~-a~~~aDviy~~~ 180 (261)
.|+++ +++++|+|+.-.
T Consensus 85 ~~~~~~~~~~aDvVilav 102 (314)
T 3ggo_A 85 TSIAKVEDFSPDFVMLSS 102 (314)
T ss_dssp SCTTGGGGGCCSEEEECS
T ss_pred CCHHHHhhccCCEEEEeC
Confidence 88899 999999998864
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.42 Score=43.17 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=113.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchHHHHh--hhC-------CCcEEe-C-
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDILDLA--KFA-------TVPVIN-G- 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~~~~a--~~~-------~vPVIN-a- 81 (261)
+=..++..+|.......-. ..|.+.+.+.-++.= +|.|++-.+-...+.+-. +.- +.=-+| |
T Consensus 56 ~k~k~~~~~Gi~~~~~~l~-----~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~ 130 (320)
T 1edz_A 56 WTQKTSESMGFRYDLRVIE-----DKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQN 130 (320)
T ss_dssp HHHHHHHHHTCEEEEEECS-----SGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHH
T ss_pred HHHHHHHHcCCEEEEEECC-----ChHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHH
Confidence 3456889999987655321 126688888888875 689999886554443221 110 111122 0
Q ss_pred ------------CCCCCChhHHHHHHHHHHHH---------hC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCC
Q 024871 82 ------------LTDYNHPCQIMADALTIIEH---------VG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACP 139 (261)
Q Consensus 82 ------------~~~~~HPtQ~L~Dl~Ti~e~---------~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P 139 (261)
.....-||-+.+= +.+.++ +| +++|++++++|-++-|....+..+...|.+++++.
T Consensus 131 l~~~~~~l~~~~~~~~~~PcTp~a~-v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~n- 208 (320)
T 1edz_A 131 LYHNVRYLDKENRLKSILPCTPLAI-VKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD- 208 (320)
T ss_dssp HHTTCCBSSSSSCSBCCCCHHHHHH-HHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEEC-
T ss_pred HhcCCccccccccCCCcCCCcHHHH-HHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEe-
Confidence 0135789988776 555566 67 79999999999766678888888888899988663
Q ss_pred CC----CCCCHHHHHHHHHhCCCeEEE--E--cCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcC
Q 024871 140 KG----FEPDKETVEKARKAGISKIEI--T--NDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAG 211 (261)
Q Consensus 140 ~~----~~~~~~~~~~~~~~g~~~i~~--~--~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~ 211 (261)
.. +...+.+ +... .....+ + +++++++++||+|++-. +. ..+.|+.+++ +
T Consensus 209 R~~~~l~~ra~~l---a~~~-~~~t~~~~t~~~~L~e~l~~ADIVIsAt----g~-----------p~~vI~~e~v---k 266 (320)
T 1edz_A 209 VNNIQKFTRGESL---KLNK-HHVEDLGEYSEDLLKKCSLDSDVVITGV----PS-----------ENYKFPTEYI---K 266 (320)
T ss_dssp SSEEEEEESCCCS---SCCC-CEEEEEEECCHHHHHHHHHHCSEEEECC----CC-----------TTCCBCTTTS---C
T ss_pred CchHHHHhHHHHH---hhhc-ccccccccccHhHHHHHhccCCEEEECC----CC-----------CcceeCHHHc---C
Confidence 22 2111111 0000 011111 2 68999999999999976 32 1255777776 4
Q ss_pred CCcEEeeCCCCCCCccccccccc
Q 024871 212 PKAYFMHCLPAERGVEVTEGVIE 234 (261)
Q Consensus 212 ~~~~~mH~lP~~rg~Ev~~~v~~ 234 (261)
+.+++.-..- +| ++++++.+
T Consensus 267 ~GavVIDVgi-~r--D~d~~v~~ 286 (320)
T 1edz_A 267 EGAVCINFAC-TK--NFSDDVKE 286 (320)
T ss_dssp TTEEEEECSS-SC--CBCGGGGT
T ss_pred CCeEEEEcCC-Cc--ccchhHHh
Confidence 5666555432 24 44444443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.054 Score=51.98 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=49.4
Q ss_pred CCC-cEEEEEcCCCchHHHHHHHHhcC------CcEEEEeCCCCCCCCHHHHHHHHHhCCCe-EEEEcCHHHHhCCCCEE
Q 024871 105 LEG-TKVVYVGDGNNIVHSWLLMASVI------PFHFVCACPKGFEPDKETVEKARKAGISK-IEITNDPKEVVQGADVV 176 (261)
Q Consensus 105 l~~-~~i~~vGd~~~v~~S~~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~g~~~-i~~~~d~~~a~~~aDvi 176 (261)
|+| +||++|| .+++.+|++..+... |+++++..... +...+.+++.|... -....++++++++||+|
T Consensus 51 L~GiKkIgIIG-lGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~----sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVV 125 (525)
T 3fr7_A 51 FKGIKQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKG----SKSFDEARAAGFTEESGTLGDIWETVSGSDLV 125 (525)
T ss_dssp TTTCSEEEEEC-CTTHHHHHHHHHHHHHHHTTCCCEEEEEECTT----CSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEE
T ss_pred hcCCCEEEEEe-EhHHHHHHHHHHHhcccccCCCCEEEEEeCCc----hhhHHHHHHCCCEEecCCCCCHHHHHhcCCEE
Confidence 778 9999999 588999998887776 88877553322 12234566677321 00124789999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 126 ILaV 129 (525)
T 3fr7_A 126 LLLI 129 (525)
T ss_dssp EECS
T ss_pred EECC
Confidence 9964
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.24 Score=44.46 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCeEEEeC-CCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcch--HHHHhhh------C-CCcEEe-C
Q 024871 15 SFETGFSLLGGHAIYLG-PDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQD--ILDLAKF------A-TVPVIN-G 81 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~-~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~--~~~~a~~------~-~vPVIN-a 81 (261)
+=..|+..+|....... |.++ ..|.+.+.++-|+.- +|.|.+-.+-... -..+-+. . +.=-+| |
T Consensus 57 ~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~~~N~G 133 (300)
T 4a26_A 57 LKHKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVG 133 (300)
T ss_dssp HHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCSHHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCCcceEE
Confidence 44678999999876543 2222 245677777777664 6788887764322 1222221 1 122334 1
Q ss_pred -----C-CCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH
Q 024871 82 -----L-TDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 82 -----~-~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
. .....||-..+ ++.+.++.+ .++|++++++|-.+.+...++.++...|++++++.-.
T Consensus 134 ~l~~g~~~~~~~PcTp~g-v~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~-------------- 198 (300)
T 4a26_A 134 LLHYKGREPPFTPCTAKG-VIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG-------------- 198 (300)
T ss_dssp HHHCTTCCCSCCCHHHHH-HHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------
T ss_pred EeecCCCcCCCCCCCHHH-HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--------------
Confidence 1 24579999999 556666665 6999999999976778999988888889998887421
Q ss_pred hCCCeEEEEcCHH--HHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 155 AGISKIEITNDPK--EVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 155 ~g~~~i~~~~d~~--~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+.+++ +.+++||+|++.. +.. .+ |+.+++ +++++++-..
T Consensus 199 --------T~~l~l~~~~~~ADIVI~Av----g~p-----------~~-I~~~~v---k~GavVIDvg 239 (300)
T 4a26_A 199 --------TSTEDMIDYLRTADIVIAAM----GQP-----------GY-VKGEWI---KEGAAVVDVG 239 (300)
T ss_dssp --------SCHHHHHHHHHTCSEEEECS----CCT-----------TC-BCGGGS---CTTCEEEECC
T ss_pred --------CCCchhhhhhccCCEEEECC----CCC-----------CC-CcHHhc---CCCcEEEEEe
Confidence 22566 8999999999975 321 12 666664 6777777654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.17 Score=43.37 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=52.6
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-C-HHHHhCCCCEEEEe
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITN-D-PKEVVQGADVVYSD 179 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d-~~~a~~~aDviy~~ 179 (261)
|-+++|++|.+||. +.|+-+.+..+...|.++++++|. +.+++.+.+++.+ +++.. . .++-++++|+|+.-
T Consensus 26 fl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~---~~~~l~~l~~~~~---i~~i~~~~~~~dL~~adLVIaA 98 (223)
T 3dfz_A 26 MLDLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPT---VSAEINEWEAKGQ---LRVKRKKVGEEDLLNVFFIVVA 98 (223)
T ss_dssp EECCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSS---CCHHHHHHHHTTS---CEEECSCCCGGGSSSCSEEEEC
T ss_pred EEEcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHHcCC---cEEEECCCCHhHhCCCCEEEEC
Confidence 44799999999995 789999999999999999999995 4555544444332 23221 1 24568999999986
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
+
T Consensus 99 T 99 (223)
T 3dfz_A 99 T 99 (223)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.42 Score=45.18 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCc-hHHHHHHHHh----cCCcEEEEeCCCCCCCCHHHHHHHHHh------CCCeEEEEcCHHHHhCCCC
Q 024871 106 EGTKVVYVGDGNN-IVHSWLLMAS----VIPFHFVCACPKGFEPDKETVEKARKA------GISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 106 ~~~~i~~vGd~~~-v~~S~~~~~~----~~g~~~~~~~P~~~~~~~~~~~~~~~~------g~~~i~~~~d~~~a~~~aD 174 (261)
++.||+++|.++- -...++..+. ..| ++++... +++.++..... ...+++.+.|+++|+++||
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di-----~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dAD 77 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDL-----DFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAAD 77 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECS-----SHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCS
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeC-----CHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCC
Confidence 4679999997642 1333333322 235 7776653 44444333221 1136888999999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+...
T Consensus 78 fVI~ai 83 (450)
T 3fef_A 78 IVIISI 83 (450)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999975
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.88 Score=39.05 Aligned_cols=162 Identities=9% Similarity=0.008 Sum_probs=92.6
Q ss_pred eccCCC--hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcch-------HHHHhhh-
Q 024871 4 IFAKPS--MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQD-------ILDLAKF- 73 (261)
Q Consensus 4 lF~~~S--tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~-------~~~~a~~- 73 (261)
+|-+|- ++.-.-+..++..+|....+.... . ..|.+.+.++-+....+.+-+-.+-... +...++.
T Consensus 6 ~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~-~---~~~~l~~~i~~l~~~~~G~~vt~P~k~~i~~~~~~l~~~a~~~ 81 (263)
T 2d5c_A 6 VLGHPVAHSLSPAMHAFALESLGLEGSYEAWD-T---PLEALPGRLKEVRRAFRGVNLTLPLKEAALAHLDWVSPEAQRI 81 (263)
T ss_dssp EEESSCTTCSHHHHHHHHHHHTTCCEEEEEEE-C---CGGGHHHHHHHHHHHCSEEEECTTCTTGGGGGCSEECHHHHHH
T ss_pred EECCCcccccCHHHHHHHHHHcCCCCEEEEEe-C---CHHHHHHHHHhccccCceEEEcccCHHHHHHHHHHHhHHHHHh
Confidence 344552 334446788999999988775431 1 2456778777776655554443332222 1222332
Q ss_pred CC-CcEE-eCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH
Q 024871 74 AT-VPVI-NGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK 151 (261)
Q Consensus 74 ~~-vPVI-Na~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~ 151 (261)
.. =+|+ |.+.-..+-|-...=+..+.+....++| +++++|- +++..+.+..+...|.+++++.+.. +...+.
T Consensus 82 gavn~i~~~~g~~~g~ntd~~g~~~~l~~~~~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~----~~~~~l 155 (263)
T 2d5c_A 82 GAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTP----QRALAL 155 (263)
T ss_dssp TCCCEEEEETTEEEEECCHHHHHHHHHHHTTCCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSH----HHHHHH
T ss_pred CCCCcEEccCCeEEEeCCCHHHHHHHHHHhCCCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH----HHHHHH
Confidence 11 2444 3221122333332223333333236899 9999995 6688998888888888877776531 112223
Q ss_pred HHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 152 ARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 152 ~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++.|. . .++++++ +++|+|+...
T Consensus 156 ~~~~~~-~---~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 156 AEEFGL-R---AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp HHHHTC-E---ECCGGGG-GGCSEEEECS
T ss_pred HHHhcc-c---hhhHhhc-cCCCEEEEcc
Confidence 445553 2 4678888 9999999875
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.76 Score=43.88 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|++|+++|- +.+..+.+..+..+|++++.+.| ++.-.+.+++.|. . ..+++++++++|+|+...
T Consensus 271 ~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~-----~~~~~~~A~~~Ga-~---~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEI-----DPINALQAMMEGF-D---VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTTC-E---ECCHHHHGGGCSEEEECS
T ss_pred CCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCC-E---EecHHHHHhCCCEEEECC
Confidence 588999999995 88999999999999999887765 3344455667773 2 347889999999999864
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.15 Score=39.62 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHH-HHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETV-EKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~-~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|+++|- +++....+..+...|.+++++.+. ++-. +.+++.| ..+...++++++++++|+|+...
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~-----~~~~~~~a~~~~-~~~~~~~~~~~~~~~~Divi~at 88 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRN-----IDHVRAFAEKYE-YEYVLINDIDSLIKNNDVIITAT 88 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESC-----HHHHHHHHHHHT-CEEEECSCHHHHHHTCSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHHhC-CceEeecCHHHHhcCCCEEEEeC
Confidence 899999995 889998888888889886666542 2222 3355666 35566788999999999999875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.27 Score=45.59 Aligned_cols=97 Identities=8% Similarity=0.008 Sum_probs=66.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-E--------------------
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI-T-------------------- 163 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-~-------------------- 163 (261)
+.|.+|+++|- +++....+..+..+|++++.+.+.. +..+.+++.|. .+.. .
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~-----~~~~~~~~lGa-~~~~~~~~~~~~~~~g~~~~~~~~~~ 242 (401)
T 1x13_A 170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRP-----EVKEQVQSMGA-EFLELDFKEEAGSGDGYAKVMSDAFI 242 (401)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCG-----GGHHHHHHTTC-EECCC--------CCHHHHHHSHHHH
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHcCC-EEEEecccccccccccchhhccHHHH
Confidence 56899999995 7899999999999999887775532 23344556663 2211 0
Q ss_pred ----cCHHHHhCCCCEEEEec-ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 164 ----NDPKEVVQGADVVYSDV-WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 164 ----~d~~~a~~~aDviy~~~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
.++++.++++|+|+... |+. . ..+.-++++.++..+++.+|.-..
T Consensus 243 ~~~~~~l~e~~~~aDvVI~~~~~pg--~----------~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 243 KAEMELFAAQAKEVDIIVTTALIPG--K----------PAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHCSEEEECCCCTT--S----------CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHhCCCCEEEECCccCC--C----------CCCeeeCHHHHhcCCCCcEEEEEc
Confidence 03678888999999875 431 1 023457888888888877776553
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.85 Score=40.88 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=106.9
Q ss_pred HHHHHHhcCCeEEE--eCCCCcCCCCCCCHHHHHHHHhhh--ccEEEEeeCCcchH--HHHhhh------C-CCcEEeC-
Q 024871 16 FETGFSLLGGHAIY--LGPDDIQMGKREETRDAARVLCRY--NDIIMARVFGHQDI--LDLAKF------A-TVPVING- 81 (261)
Q Consensus 16 Fe~A~~~LGg~~~~--l~~~~s~~~kgEs~~Dt~~~ls~~--~D~iv~R~~~~~~~--~~~a~~------~-~vPVINa- 81 (261)
=..++.++|..... ++...+ .|.+.+.+.-|+.- +|.|++-.+-...+ ..+-+. . +.=-+|.
T Consensus 74 K~k~c~~vGi~s~~~~lp~~~s----e~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDG~hp~N~G 149 (303)
T 4b4u_A 74 KGNACRRVGMDSLKIELPQETT----TEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFG 149 (303)
T ss_dssp HHHHHHHTTCEEEEEEECTTCC----HHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGCTTCCCHHHHH
T ss_pred HHHHHHHcCCeEEEEecCccCC----HHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcccccCccCcchHH
Confidence 35689999998754 444332 34455555555553 57898887643322 111111 1 1112231
Q ss_pred ----CCCCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 82 ----LTDYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 82 ----~~~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+....-||-.++ ++.|.++++ .++|+++++||-.+-|..-+..++..-+.++++|..+
T Consensus 150 ~L~~g~~~~~PcTp~g-v~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------------- 212 (303)
T 4b4u_A 150 RMAMGEAAYGSATPAG-IMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------------- 212 (303)
T ss_dssp HHHTTCCCCCCHHHHH-HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----------------
T ss_pred HhcCCCCcccCccHHH-HHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC----------------
Confidence 234577887765 566667766 6999999999987778888888888889999988532
Q ss_pred CCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 157 ISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 157 ~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.|+++..++||+|++-. |. +.-|+.+++ ++++++.-.+-
T Consensus 213 ------T~dl~~~~~~ADIvV~A~----G~------------p~~i~~d~v---k~GavVIDVGi 252 (303)
T 4b4u_A 213 ------TQNLPELVKQADIIVGAV----GK------------AELIQKDWI---KQGAVVVDAGF 252 (303)
T ss_dssp ------CSSHHHHHHTCSEEEECS----CS------------TTCBCGGGS---CTTCEEEECCC
T ss_pred ------CCCHHHHhhcCCeEEecc----CC------------CCccccccc---cCCCEEEEece
Confidence 458899999999999975 53 233777764 57889888774
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.088 Score=49.05 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=94.5
Q ss_pred HHHHHHHHhhh---ccEEEEeeCCcc-h---HHHHhhhCCCcEEeCCCCCCChhHH--HHHHHHHHHHhC-CCCCcEEEE
Q 024871 43 TRDAARVLCRY---NDIIMARVFGHQ-D---ILDLAKFATVPVINGLTDYNHPCQI--MADALTIIEHVG-RLEGTKVVY 112 (261)
Q Consensus 43 ~~Dt~~~ls~~---~D~iv~R~~~~~-~---~~~~a~~~~vPVINa~~~~~HPtQ~--L~Dl~Ti~e~~g-~l~~~~i~~ 112 (261)
+++.+..+... +-.|=+-.++.. . ++++-+..++||+| |..|=|-+ |+=++.-.+.-| +++..||++
T Consensus 117 ~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~---DDiqGTa~V~lAall~al~l~g~~l~d~kVVi 193 (398)
T 2a9f_A 117 TEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFH---DDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVV 193 (398)
T ss_dssp HHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEE---HHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEE
T ss_pred HHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhcCCcceec---chhhhHHHHHHHHHHHHHHHhCCCCCccEEEE
Confidence 55554554443 245555554332 2 33444445799999 45555533 444554444444 589999999
Q ss_pred EcCCCchHHHHHHHHhcCCc-EEEEeCCCCC-------CCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 113 VGDGNNIVHSWLLMASVIPF-HFVCACPKGF-------EPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 113 vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~-------~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
+|-+ ...-..+.++..+|. +++++--+++ .+.+.-..++++... .....+++|++++|||++-.+
T Consensus 194 ~GAG-aAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~--~~~~~~L~eav~~ADV~IG~S---- 266 (398)
T 2a9f_A 194 NGGG-SAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR--EFKSGTLEDALEGADIFIGVS---- 266 (398)
T ss_dssp ECCS-HHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC--TTCCCSCSHHHHTTCSEEECC----
T ss_pred ECCC-HHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCc--ccchhhHHHHhccCCEEEecC----
Confidence 9975 222222333333477 8887765542 122222223443321 112457899999999998763
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccccc
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGV 232 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v 232 (261)
.+--+|+|+++..+++.+|+-.--. -.|++.+.
T Consensus 267 -------------apgl~T~EmVk~Ma~~pIIfalsNP--t~E~~pe~ 299 (398)
T 2a9f_A 267 -------------APGVLKAEWISKMAARPVIFAMANP--IPEIYPDE 299 (398)
T ss_dssp -------------STTCCCHHHHHTSCSSCEEEECCSS--SCSSCHHH
T ss_pred -------------CCCCCCHHHHHhhCCCCEEEECCCC--CccCCHHH
Confidence 1345899999988889898865321 24666553
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.35 Score=43.02 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=51.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+.+||+++|- +++...++..+...|.++++..+ +++..+.+.+.| +..+.+++++++++|+|+.-.
T Consensus 29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr-----~~~~~~~l~~~g---~~~~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNR-----TPARAASLAALG---ATIHEQARAAARDADIVVSML 95 (320)
T ss_dssp CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHTTT---CEEESSHHHHHTTCSEEEECC
T ss_pred cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcC-----CHHHHHHHHHCC---CEeeCCHHHHHhcCCEEEEEC
Confidence 46689999995 88888888888888998876643 445555555555 366889999999999999864
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1 Score=39.09 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchH-------HHHhhh--CCCcEE
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDI-------LDLAKF--ATVPVI 79 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~-------~~~a~~--~~vPVI 79 (261)
++...=+..++..+|....+..-. . ..|.+.+.++-+... ++.+-+-.+-...+ ...|+. +--+|+
T Consensus 25 s~sp~~h~~~~~~~g~~~~y~~~~-~---~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~l~~~A~~~gavnti~ 100 (275)
T 2hk9_A 25 SLSPVFQNALIRYAGLNAVYLAFE-I---NPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVK 100 (275)
T ss_dssp CSHHHHHHHHHHHHTCSEEEEEEE-C---CGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSEECHHHHHHTCCCEEE
T ss_pred ccCHHHHHHHHHHcCCCcEEEEEE-C---CHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHHhhHHHHHhCCcceEE
Confidence 344556778999999987765332 1 246788888777654 45666554432221 223322 222565
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-HHHhCC
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-ARKAGI 157 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-~~~~g~ 157 (261)
+-.| -..+-|-...=+..+.+.-..++|++|+++|- +++..+.+..+...|.+++++.+. ++-.+. +++.|
T Consensus 101 ~~~g~~~g~nTd~~G~~~~l~~~~~~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~-----~~~~~~l~~~~g- 173 (275)
T 2hk9_A 101 FENGKAYGYNTDWIGFLKSLKSLIPEVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRT-----KEKAIKLAQKFP- 173 (275)
T ss_dssp EETTEEEEECCHHHHHHHHHHHHCTTGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSS-----HHHHHHHTTTSC-
T ss_pred eeCCEEEeecCCHHHHHHHHHHhCCCcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHHHHHcC-
Confidence 4222 11222322222222333222588999999995 688888888887778888777543 222222 22233
Q ss_pred CeEEEEcCHHHHhCCCCEEEEec
Q 024871 158 SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+...++++++++++|+|+...
T Consensus 174 --~~~~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 174 --LEVVNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp --EEECSCGGGTGGGCSEEEECS
T ss_pred --CeeehhHHhhhcCCCEEEEeC
Confidence 455668889999999999875
|
| >3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.51 Score=40.49 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=57.1
Q ss_pred cEEEEE--cCCCchHHHHHHHHhc--CCcEEE-EeCCCCCCCCHHHHHHHHHhCCCeEEEEc-C----------HHHHh-
Q 024871 108 TKVVYV--GDGNNIVHSWLLMASV--IPFHFV-CACPKGFEPDKETVEKARKAGISKIEITN-D----------PKEVV- 170 (261)
Q Consensus 108 ~~i~~v--Gd~~~v~~S~~~~~~~--~g~~~~-~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d----------~~~a~- 170 (261)
+||+++ |.+.+ +..++..+.. ++.++. +++.+ ++....+.|++.|+..+.+.. + +.+.+
T Consensus 23 ~rI~~l~SG~g~~-~~~~l~~l~~~~~~~~I~~Vvt~~---~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~ 98 (229)
T 3auf_A 23 IRIGVLISGSGTN-LQAILDGCREGRIPGRVAVVISDR---ADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQ 98 (229)
T ss_dssp EEEEEEESSCCHH-HHHHHHHHHTTSSSEEEEEEEESS---TTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCcHH-HHHHHHHHHhCCCCCeEEEEEcCC---CchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHH
Confidence 689999 65444 3333333322 355543 22221 233456778888864332211 1 11222
Q ss_pred -CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 171 -QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 171 -~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.+.|+|..-.|. ..|.+++++..+..++=+|| ||.+||.
T Consensus 99 ~~~~Dliv~agy~-----------------~IL~~~~l~~~~~~~iNiHpSLLP~yrG~ 140 (229)
T 3auf_A 99 AYGVDLVCLAGYM-----------------RLVRGPMLTAFPNRILNIHPSLLPAFPGL 140 (229)
T ss_dssp HTTCSEEEESSCC-----------------SCCCHHHHHHSTTCEEEEESSCTTSSCSS
T ss_pred hcCCCEEEEcChh-----------------HhCCHHHHhhccCCEEEEccCcCcCCCCc
Confidence 266777776542 45788888888888999999 8998853
|
| >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.51 Score=42.63 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCCCCCCHHHHHHHHHhCCCeEEEE---------cCHHHHh--CC
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKGFEPDKETVEKARKAGISKIEIT---------NDPKEVV--QG 172 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~~~~~~~~~~~~~~~g~~~i~~~---------~d~~~a~--~~ 172 (261)
..+||+|+|..+--++++-.+.. -+.++ ++..|+.-.-+..+.+.|+++|+..+... .+..+.+ .+
T Consensus 21 ~~mrIvf~G~~~fa~~~L~~L~~-~~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~ 99 (329)
T 2bw0_A 21 QSMKIAVIGQSLFGQEVYCHLRK-EGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALG 99 (329)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHH-TTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHH-CCCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccccccccHHHHHHHHhcC
Confidence 44899999963222234433322 24443 44445421112345577888886433321 1111223 25
Q ss_pred CCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 173 ADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 173 aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.|+++.-.| ...|.+++++..+-.++-+|| ||++||
T Consensus 100 ~Dliv~a~y-----------------~~ilp~~il~~~~~g~iNiHpSLLP~yRG 137 (329)
T 2bw0_A 100 AELNVLPFC-----------------SQFIPMEIISAPRHGSIIYHPSLLPRHRG 137 (329)
T ss_dssp CSEEEESSC-----------------SSCCCHHHHTCSTTCEEEEESSCTTTTBS
T ss_pred CCEEEEeeh-----------------hhhCCHHHHhhCcCCEEEEcCCcCcCCCC
Confidence 677777643 234788888887778999999 799885
|
| >3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B | Back alignment and structure |
|---|
Probab=92.66 E-value=0.48 Score=45.45 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=84.7
Q ss_pred HHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHH
Q 024871 16 FETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADA 95 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl 95 (261)
...=...+|..++.+ +..|-|++|..+.-++-+.+++-+.......+.+.+.-++|.+... -.=+...-.=|
T Consensus 175 ikrlL~~~Gi~v~~~------~pgg~t~~ei~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~--PiG~~~T~~~L 246 (525)
T 3aek_B 175 VTKLLATMGIKVNVC------APLGASPDDLRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIV--PIGVGATRDFL 246 (525)
T ss_dssp HHHHHHTTTCEEEEE------EETTCCHHHHHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCC--CCSHHHHHHHH
T ss_pred HHHHHHHCCCeEEEE------eCCCCCHHHHHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecC--CcCHHHHHHHH
Confidence 444456788888764 1235677777765555555554332223345566666677777631 11111111111
Q ss_pred HHHHHH----------------------hCCCCCcEEEEEcCCCchHHHHHHHH-hcCCcEEEEeCCCCCCCCHHHHHHH
Q 024871 96 LTIIEH----------------------VGRLEGTKVVYVGDGNNIVHSWLLMA-SVIPFHFVCACPKGFEPDKETVEKA 152 (261)
Q Consensus 96 ~Ti~e~----------------------~g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~ 152 (261)
..|.+. ...+.|+|+++.||. -.+.|++..+ .-+|++++.++-..-...+.+.+.+
T Consensus 247 r~ia~~~g~~~~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~-~~~~~la~~L~~ElGm~vv~~gt~~~~~~~~~~~~~ 325 (525)
T 3aek_B 247 AEVSKITGLPVVTDESTLRQPWWSASVDSTYLTGKRVFIFGDG-THVIAAARIAAKEVGFEVVGMGCYNREMARPLRTAA 325 (525)
T ss_dssp HHHHHHHCCCCCCCCTTCCHHHHHHSGGGGGGTTCEEEECSSH-HHHHHHHHHHHHTTCCEEEEEEESCGGGHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCc-hHHHHHHHHHHHHcCCeeEEEecCchhHHHHHHHHH
Confidence 111111 134789999999984 3567777777 6899988765432211222222334
Q ss_pred HHhCCCeEEEEcCHHH---HhC--CCCEEEEec
Q 024871 153 RKAGISKIEITNDPKE---VVQ--GADVVYSDV 180 (261)
Q Consensus 153 ~~~g~~~i~~~~d~~~---a~~--~aDviy~~~ 180 (261)
++.+ ..+.+.+|..+ .++ +.|+++.+.
T Consensus 326 ~~~~-~~v~i~~D~~el~~~i~~~~pDL~ig~~ 357 (525)
T 3aek_B 326 AEYG-LEALITDDYLEVEKAIEAAAPELILGTQ 357 (525)
T ss_dssp HHTT-CCCEECSCHHHHHHHHHHHCCSEEEECH
T ss_pred HhcC-CcEEEeCCHHHHHHHHhhcCCCEEEecc
Confidence 4455 34566667654 343 689999754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.68 Score=40.28 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh-----------C--C---------CeEEEEcC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA-----------G--I---------SKIEITND 165 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~-----------g--~---------~~i~~~~d 165 (261)
+||+++|- +++..+++..++..|.++++..+. ++.++.+.+. | . ..+..+.|
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~-----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~ 78 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDIN-----TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD 78 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS-----HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCC-----HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence 68999995 789999999888889998877543 3333333221 1 0 13567899
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
+++++++||+|+.-.
T Consensus 79 ~~~~~~~aDlVi~av 93 (283)
T 4e12_A 79 LAQAVKDADLVIEAV 93 (283)
T ss_dssp HHHHTTTCSEEEECC
T ss_pred HHHHhccCCEEEEec
Confidence 999999999999865
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.17 Score=45.53 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=50.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++++|++|| .+++.++++..+...|.++++..+.. +...+.+++.|. ..+ +++++++++|+|+.-.
T Consensus 14 l~~~~I~IIG-~G~mG~alA~~L~~~G~~V~~~~~~~----~~~~~~a~~~G~---~~~-~~~e~~~~aDvVilav 80 (338)
T 1np3_A 14 IQGKKVAIIG-YGSQGHAHACNLKDSGVDVTVGLRSG----SATVAKAEAHGL---KVA-DVKTAVAAADVVMILT 80 (338)
T ss_dssp HHTSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECCTT----CHHHHHHHHTTC---EEE-CHHHHHHTCSEEEECS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHHCcCEEEEEECCh----HHHHHHHHHCCC---EEc-cHHHHHhcCCEEEEeC
Confidence 4578999999 58999999998888898887776542 222445666763 345 8889999999999864
|
| >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A | Back alignment and structure |
|---|
Probab=92.57 E-value=0.55 Score=42.15 Aligned_cols=100 Identities=16% Similarity=0.230 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCC-----CCC-CHHHHHHHHHhCCCeEEEEcCH-----HHHh--C
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKG-----FEP-DKETVEKARKAGISKIEITNDP-----KEVV--Q 171 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~-----~~~-~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~ 171 (261)
.+||+|+|...--+.++-.+.. -|.++ ++..|+. ..+ +..+.+.|+++|+.-++ .+++ .+.+ .
T Consensus 3 ~mrIvf~Gt~~fa~~~L~~L~~-~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~ 80 (314)
T 1fmt_A 3 SLRIIFAGTPDFAARHLDALLS-SGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQ-PVSLRPQENQQLVAEL 80 (314)
T ss_dssp CCEEEEEECSHHHHHHHHHHHH-TTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEEC-CSCSCSHHHHHHHHHT
T ss_pred CCEEEEEecCHHHHHHHHHHHH-CCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEe-cCCCCCHHHHHHHHhc
Confidence 5899999986544444433332 24554 3344421 111 23566788888864322 2221 1222 3
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+.|+|..-.| ...|.+++++..+-.++-+|| ||.+||
T Consensus 81 ~~Dliv~~~y-----------------~~ilp~~il~~~~~g~iNiHpSLLP~yRG 119 (314)
T 1fmt_A 81 QADVMVVVAY-----------------GLILPKAVLEMPRLGCINVHGSLLPRWRG 119 (314)
T ss_dssp TCSEEEEESC-----------------CSCCCHHHHHSSTTCEEEEESSSTTTTBS
T ss_pred CCCEEEEeec-----------------cccCCHHHHhhccCCEEEEcCCcCcCCCC
Confidence 6788887654 234788888887778999999 799885
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=1.8 Score=39.50 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=64.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE---E----------------Ec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE---I----------------TN 164 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~---~----------------~~ 164 (261)
.+.|.+|+++|- +++....+..+..+|++++.+.+..- ..+.+++.|. .+. . ++
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~-----~~~~~~~~Ga-~~~~i~~~~~~~~~~~~~~~~~~s~ 241 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA-----TKEQVESLGG-KFITVDDEAMKTAETAGGYAKEMGE 241 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST-----THHHHHHTTC-EECCC--------------------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCC-eEEeecccccccccccccchhhcCH
Confidence 468999999995 78999999999999999777655332 1233455553 221 1 01
Q ss_pred C--------HHHHhCCCCEEEEec-ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 165 D--------PKEVVQGADVVYSDV-WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 165 d--------~~~a~~~aDviy~~~-w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
+ +++.++++|+|+... |+. . -.+.-++++.++..++..++.-..
T Consensus 242 ~~~~~~~~~l~~~~~~aDvVi~~~~~pg--~----------~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 242 EFRKKQAEAVLKELVKTDIAITTALIPG--K----------PAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ---CCHHHHHHHHHTTCSEEEECCCCTT--S----------CCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHhhhHHHHHHHhCCCCEEEECCccCC--C----------CCCeeeCHHHHhcCCCCCEEEEEe
Confidence 1 678899999999764 321 1 012346788888888877766543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=2.6 Score=38.47 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHH
Q 024871 15 SFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMAD 94 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~D 94 (261)
.|..++..|.|..+ ..+ ..|=+-+|++.+...|. ..++.|+--+++...-|--+.-=
T Consensus 101 ~~~~~~~~l~g~~i-pa~-----D~gt~~~~m~~~~~~~~-----------------~~tGk~~~~GGs~~~~~aTg~Gv 157 (355)
T 1c1d_A 101 IHAENIDKLSGNYW-TGP-----DVNTNSADMDTLNDTTE-----------------FVFGRSLERGGAGSSAFTTAVGV 157 (355)
T ss_dssp HHHHHHHHTTTSEE-EEE-----CTTCCHHHHHHHHHHCS-----------------CBCCCCGGGTSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCcc-cCC-----CCCCCHHHHHHHHHhcC-----------------eeeccchhhCCCCCchhHHHHHH
Confidence 45556666655422 111 12333466666666653 14566754454433333444555
Q ss_pred HHHHH---HHhC--CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHH
Q 024871 95 ALTII---EHVG--RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEV 169 (261)
Q Consensus 95 l~Ti~---e~~g--~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a 169 (261)
++.++ ++.| +++|++|+++|- +||....+..+..+|+++++..+. ++-.+.+++.|. +.. +.++.
T Consensus 158 ~~~~~~~~~~~G~~~L~GktV~I~G~-GnVG~~~A~~l~~~GakVvvsD~~-----~~~~~~a~~~ga---~~v-~~~el 227 (355)
T 1c1d_A 158 FEAMKATVAHRGLGSLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTD-----TERVAHAVALGH---TAV-ALEDV 227 (355)
T ss_dssp HHHHHHHHHHTTCCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTTC---EEC-CGGGG
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCC-----ccHHHHHHhcCC---EEe-ChHHh
Confidence 55554 3446 499999999994 889999999999999999866543 222334555652 222 55677
Q ss_pred hC-CCCEEEEec
Q 024871 170 VQ-GADVVYSDV 180 (261)
Q Consensus 170 ~~-~aDviy~~~ 180 (261)
++ ++||+....
T Consensus 228 l~~~~DIliP~A 239 (355)
T 1c1d_A 228 LSTPCDVFAPCA 239 (355)
T ss_dssp GGCCCSEEEECS
T ss_pred hcCccceecHhH
Confidence 77 899998643
|
| >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.73 Score=39.01 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=56.3
Q ss_pred cEEEEE--cCCCchHHHHHHHHhc--CCcEE--EEeCCCCCCCCHHHHHHHHHhCCCeEEEEcC-----------HHHHh
Q 024871 108 TKVVYV--GDGNNIVHSWLLMASV--IPFHF--VCACPKGFEPDKETVEKARKAGISKIEITND-----------PKEVV 170 (261)
Q Consensus 108 ~~i~~v--Gd~~~v~~S~~~~~~~--~g~~~--~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d-----------~~~a~ 170 (261)
+||+++ |.+.+.. .++..+.. ++.++ +++.|+ +....+.|+++|+..+.+... +.+.+
T Consensus 2 ~rI~vl~SG~g~~~~-~~l~~l~~~~~~~~i~~Vvs~~~----~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l 76 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQ-AIIDAIESGKVNASIELVISDNP----KAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALEL 76 (216)
T ss_dssp EEEEEEECSCCHHHH-HHHHHHHTTSSCEEEEEEEESCT----TCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHH-HHHHHHHhCCCCCeEEEEEeCCC----ChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH
Confidence 588988 6554433 33333322 33354 333332 234567888998754332211 11222
Q ss_pred --CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 171 --QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 171 --~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
.+.|+|..-.| ...|.+++++..+..++=+|| ||.+||.
T Consensus 77 ~~~~~Dliv~a~y-----------------~~il~~~~l~~~~~~~iNiHpSLLP~yrG~ 119 (216)
T 2ywr_A 77 KKKGVELVVLAGF-----------------MRILSHNFLKYFPNKVINIHPSLIPAFQGL 119 (216)
T ss_dssp HHTTCCEEEESSC-----------------CSCCCHHHHTTSTTCEEEEESSCTTTTCST
T ss_pred HhcCCCEEEEeCc-----------------hhhCCHHHHhhccCCeEEEcCCcCcCCCCc
Confidence 26677777644 235788888887778999999 7998853
|
| >3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.59 Score=39.49 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=54.8
Q ss_pred cEEEEE--cCCCchHHHHHHHHhc--CCcEEE--EeCCCCCCCCHHHHHHHHHhCCCeEEEEcC-----------HHHHh
Q 024871 108 TKVVYV--GDGNNIVHSWLLMASV--IPFHFV--CACPKGFEPDKETVEKARKAGISKIEITND-----------PKEVV 170 (261)
Q Consensus 108 ~~i~~v--Gd~~~v~~S~~~~~~~--~g~~~~--~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d-----------~~~a~ 170 (261)
+||+++ |.+.+... ++..+.. ++.++. +.-| ++....+.|+++|+..+.+... ..+.+
T Consensus 4 ~ki~vl~sG~g~~~~~-~l~~l~~~~l~~~I~~Vit~~----~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l 78 (212)
T 3av3_A 4 KRLAVFASGSGTNFQA-IVDAAKRGDLPARVALLVCDR----PGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL 78 (212)
T ss_dssp EEEEEECCSSCHHHHH-HHHHHHTTCCCEEEEEEEESS----TTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred cEEEEEEECCcHHHHH-HHHHHHhCCCCCeEEEEEeCC----CCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH
Confidence 456555 55444333 3333222 355553 3332 2335677888998753322211 11222
Q ss_pred --CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 --QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 --~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.+.|+|..-.| ...+.+++++..+..++-+|| ||.+||
T Consensus 79 ~~~~~Dliv~a~y-----------------~~il~~~~l~~~~~~~iNiHpSLLP~yrG 120 (212)
T 3av3_A 79 KGRQIDWIALAGY-----------------MRLIGPTLLSAYEGKIVNIHPSLLPAFPG 120 (212)
T ss_dssp HHTTCCEEEESSC-----------------CSCCCHHHHHHTTTCEEEEESSCTTSSCS
T ss_pred HhcCCCEEEEchh-----------------hhhCCHHHHhhhcCCEEEEecCcCCCCCC
Confidence 25677776643 235788889888888999999 899886
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=92.01 E-value=0.57 Score=40.32 Aligned_cols=66 Identities=23% Similarity=0.132 Sum_probs=49.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
+||+++| .+++..+++..+...|. ++++..+ .++..+.+++.|. ....++|++++++ ++|+|+.-.
T Consensus 2 ~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~d~-----~~~~~~~~~~~g~-~~~~~~~~~~~~~~~aDvVilav 70 (281)
T 2g5c_A 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDI-----NPESISKAVDLGI-IDEGTTSIAKVEDFSPDFVMLSS 70 (281)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECS-----CHHHHHHHHHTTS-CSEEESCGGGGGGTCCSEEEECS
T ss_pred cEEEEEe-cCHHHHHHHHHHHhcCCCcEEEEEeC-----CHHHHHHHHHCCC-cccccCCHHHHhcCCCCEEEEcC
Confidence 4899999 68999999988888887 7776654 3455566667773 2234678889999 999999864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.83 E-value=1.1 Score=39.70 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=49.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCC--CCCHHHHHHHHHhCCCeEEEEc-CHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGF--EPDKETVEKARKAGISKIEITN-DPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~--~~~~~~~~~~~~~g~~~i~~~~-d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...| .++++..+..- +-.++..+.+.+.|. .. +++++++++|+|+.-.
T Consensus 25 m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-----~~~s~~e~~~~aDvVi~av 95 (317)
T 4ezb_A 25 TTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-----EPLDDVAGIACADVVLSLV 95 (317)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-----EEESSGGGGGGCSEEEECC
T ss_pred CeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-----CCCCHHHHHhcCCEEEEec
Confidence 6899999 5899999999888889 88887765321 111234455555663 55 7899999999999864
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.77 Score=39.17 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=47.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcE-EEEeCCCCCCCCHHHHHHHHHh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFH-FVCACPKGFEPDKETVEKARKA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~-~~~~~P~~~~~~~~~~~~~~~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++++||+++|- +++..+++..+...|.+ +.++.+ +++..+.+.+. | +..+.|++++++++|+|+.-.
T Consensus 8 ~~~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~-----~~~~~~~~~~~~g---~~~~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IEDTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSR-----TEESARELAQKVE---AEYTTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECS-----SHHHHHHHHHHTT---CEEESCGGGSCSCCSEEEECC
T ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeC-----CHHHHHHHHHHcC---CceeCCHHHHhcCCCEEEEec
Confidence 45679999995 88888888777777877 555543 34444444443 5 355788999999999999864
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.40 E-value=1.6 Score=38.13 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+||+++| .+++..+++..+...|.++++..+..- ..+.+.+.| +..++|++++++ +|+|+.-.
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~-----~~~~~~~~g---~~~~~~~~~~~~-aDvvi~~v 78 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIE-----AMTPLAEAG---ATLADSVADVAA-ADLIHITV 78 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTT-----TSHHHHHTT---CEECSSHHHHTT-SSEEEECC
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHH-----HHHHHHHCC---CEEcCCHHHHHh-CCEEEEEC
Confidence 36899999 588999999988888988887754322 223344555 356889999999 99999864
|
| >3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 | Back alignment and structure |
|---|
Probab=91.39 E-value=1.1 Score=37.97 Aligned_cols=99 Identities=13% Similarity=0.221 Sum_probs=54.5
Q ss_pred CcEEEEE--cCCCchHHHHHHHHhc-CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc----C-------HHHHh--
Q 024871 107 GTKVVYV--GDGNNIVHSWLLMASV-IPFHFVCACPKGFEPDKETVEKARKAGISKIEITN----D-------PKEVV-- 170 (261)
Q Consensus 107 ~~~i~~v--Gd~~~v~~S~~~~~~~-~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~----d-------~~~a~-- 170 (261)
.+||++. |.+.| ...++..+.. ++.++..+-.. .++..-++.|+++|+..+.+.. + +.+.+
T Consensus 5 ~~riavl~SG~Gsn-l~all~~~~~~~~~eI~~Vis~--~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~ 81 (215)
T 3tqr_A 5 PLPIVVLISGNGTN-LQAIIGAIQKGLAIEIRAVISN--RADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDH 81 (215)
T ss_dssp CEEEEEEESSCCHH-HHHHHHHHHTTCSEEEEEEEES--CTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEEeCCcHH-HHHHHHHHHcCCCCEEEEEEeC--CcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHh
Confidence 4677766 44333 3344443322 45554432211 1222335667777764333211 1 11233
Q ss_pred CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 ~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.+.|+|..-.|. ..+.++.++..+..++=+|| ||.+||
T Consensus 82 ~~~Dliv~agy~-----------------~il~~~~l~~~~~~~iNiHpSLLP~yrG 121 (215)
T 3tqr_A 82 YDPKLIVLAGFM-----------------RKLGKAFVSHYSGRMINIHPSLLPKYTG 121 (215)
T ss_dssp TCCSEEEESSCC-----------------SCCCHHHHHHTTTSEEEEESSSTTTTCS
T ss_pred cCCCEEEEccch-----------------hhCCHHHHhhccCCeEEeCcccCCCCCC
Confidence 356888776542 34788888888778999999 899885
|
| >3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.98 Score=40.61 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEE--EeCCC---C--CC-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFV--CACPK---G--FE-PDKETVEKARKAGISKIEITNDP-----KEVV-- 170 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~--~~~P~---~--~~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~-- 170 (261)
+.+||+|+|-..--++++-.+... +.+++ +..|+ + .. .+..+.+.|+++|+..++ ..++ .+.+
T Consensus 6 ~~mrivf~Gt~~fa~~~L~~L~~~-~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~ 83 (318)
T 3q0i_A 6 QSLRIVFAGTPDFAARHLAALLSS-EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ-PENFKSDESKQQLAA 83 (318)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTS-SSEEEEEECCCC---------CCCHHHHHHHHTTCCEEC-CSCSCSHHHHHHHHT
T ss_pred cCCEEEEEecCHHHHHHHHHHHHC-CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc-cCcCCCHHHHHHHHh
Confidence 358999999865556666554433 55543 33342 1 11 133566788888864322 2222 1223
Q ss_pred CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 ~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.+.|+|+.-.| ...|.+++++..+-.++-+|| ||.+||
T Consensus 84 ~~~Dliv~~~y-----------------~~ilp~~~l~~~~~g~iNiHpSlLP~yRG 123 (318)
T 3q0i_A 84 LNADLMVVVAY-----------------GLLLPKVVLDTPKLGCINVHGSILPRWRG 123 (318)
T ss_dssp TCCSEEEESSC-----------------CSCCCHHHHTSSTTCEEEEESSSTTTTBS
T ss_pred cCCCEEEEeCc-----------------cccCCHHHHhhCcCCEEEeCCccCcCCCC
Confidence 35788887654 245788888877778999999 899885
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.82 Score=42.90 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=49.4
Q ss_pred HHHHHHHHhCC-CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH---------------hCC
Q 024871 94 DALTIIEHVGR-LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK---------------AGI 157 (261)
Q Consensus 94 Dl~Ti~e~~g~-l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~---------------~g~ 157 (261)
-.+|.....++ .+-.||+++| .+++..+++..++. |.+++.... +++.++.+++ .+.
T Consensus 22 ~~~~~~~~~~r~~~~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~-----~~~~v~~l~~g~~~i~e~~l~~ll~~~~ 94 (432)
T 3pid_A 22 ASMTGGQQMGRGSEFMKITISG-TGYVGLSNGVLIAQ-NHEVVALDI-----VQAKVDMLNQKISPIVDKEIQEYLAEKP 94 (432)
T ss_dssp -------------CCCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECS-----CHHHHHHHHTTCCSSCCHHHHHHHHHSC
T ss_pred hhccCCcccccccCCCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEec-----CHHHhhHHhccCCccccccHHHHHhhcc
Confidence 34555555553 5567999999 58899999888887 988876543 3333333322 111
Q ss_pred CeEEEEcCHHHHhCCCCEEEEec
Q 024871 158 SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 158 ~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..+..+.|+++++++||+|+.-.
T Consensus 95 ~~l~~ttd~~ea~~~aDvViiaV 117 (432)
T 3pid_A 95 LNFRATTDKHDAYRNADYVIIAT 117 (432)
T ss_dssp CCEEEESCHHHHHTTCSEEEECC
T ss_pred CCeEEEcCHHHHHhCCCEEEEeC
Confidence 35888999999999999988753
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.85 Score=40.43 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=47.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+||| .+++...++.-+.+-|.++++. ...++-.+.+.+.|. ...+++.|+++++|+|++-.
T Consensus 4 ~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~-----dr~~~~~~~l~~~Ga---~~a~s~~e~~~~~dvv~~~l 67 (300)
T 3obb_A 4 KQIAFIG-LGHMGAPMATNLLKAGYLLNVF-----DLVQSAVDGLVAAGA---SAARSARDAVQGADVVISML 67 (300)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEE-----CSSHHHHHHHHHTTC---EECSSHHHHHTTCSEEEECC
T ss_pred CEEEEee-ehHHHHHHHHHHHhCCCeEEEE-----cCCHHHHHHHHHcCC---EEcCCHHHHHhcCCceeecC
Confidence 5899999 5677777766666678887754 455666666666763 56889999999999999853
|
| >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=1.5 Score=36.94 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=53.6
Q ss_pred cEEEEEcCCC-chHHHHHHHHhc--CCcEE--EEeCCCCCCCCHHHHHHHHHhCCCeEEEEc-C----------HHHHhC
Q 024871 108 TKVVYVGDGN-NIVHSWLLMASV--IPFHF--VCACPKGFEPDKETVEKARKAGISKIEITN-D----------PKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~-~v~~S~~~~~~~--~g~~~--~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-d----------~~~a~~ 171 (261)
+||++++-++ -...+++..+.. ++.++ +++.|+ +....+.|+++|+..+.+.. + +.+.++
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~----~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~ 76 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKA----DAFGLERARQAGIATHTLIASAFDSREAYDRELIHEID 76 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCT----TCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHG
T ss_pred CEEEEEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCC----chHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHHH
Confidence 3566665432 234455544332 24443 333322 22345667777754332211 1 112232
Q ss_pred --CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 172 --GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 172 --~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+.|+|..-.|. ..+.+++++..+..++-+|| ||.+||.
T Consensus 77 ~~~~Dliv~agy~-----------------~il~~~~l~~~~~~~iNiHpSlLP~yrG~ 118 (212)
T 1jkx_A 77 MYAPDVVVLAGFM-----------------RILSPAFVSHYAGRLLNIHPSLLPKYPGL 118 (212)
T ss_dssp GGCCSEEEESSCC-----------------SCCCHHHHHHTTTSEEEEESSCTTSCCSS
T ss_pred hcCCCEEEEeChh-----------------hhCCHHHHhhccCCEEEEccCcccCCCCc
Confidence 56777776542 34788888888878999999 7998853
|
| >2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.9 Score=37.77 Aligned_cols=135 Identities=10% Similarity=-0.000 Sum_probs=80.2
Q ss_pred eccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC
Q 024871 4 IFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT 83 (261)
Q Consensus 4 lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~ 83 (261)
+|.-|..+-+--|+..+..++..+...... -|.--..++-+..=+|+|+-|. +....+.++.++|||.-.-
T Consensus 8 ~~iapy~~l~~~~~~i~~e~~~~i~i~~~~------l~~~v~~a~~~~~~~dVIISRG---gta~~lr~~~~iPVV~I~~ 78 (196)
T 2q5c_A 8 ALISQNENLLNLFPKLALEKNFIPITKTAS------LTRASKIAFGLQDEVDAIISRG---ATSDYIKKSVSIPSISIKV 78 (196)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCEEEEEECC------HHHHHHHHHHHTTTCSEEEEEH---HHHHHHHTTCSSCEEEECC
T ss_pred EEEEccHHHHHHHHHHHhhhCCceEEEECC------HHHHHHHHHHhcCCCeEEEECC---hHHHHHHHhCCCCEEEEcC
Confidence 455566666667888888888765433221 1112233444433479999994 3455566778999999643
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 84 DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
+. -|++......... +.||++||- .|+....-..+..+|.++.+......+--+..++.+++.|
T Consensus 79 s~-------~Dil~al~~a~~~-~~kIavvg~-~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 79 TR-------FDTMRAVYNAKRF-GNELALIAY-KHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTEN 142 (196)
T ss_dssp CH-------HHHHHHHHHHGGG-CSEEEEEEE-SSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTT
T ss_pred CH-------hHHHHHHHHHHhh-CCcEEEEeC-cchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCC
Confidence 22 3555444433332 359999996 4444455556666787777665444332345566666666
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.45 Score=41.97 Aligned_cols=67 Identities=7% Similarity=-0.086 Sum_probs=51.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
....||++|| .+++..+++..+...|.++++.. .+++..+.+.+.|. ....+++++++++|+|+.-.
T Consensus 7 ~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~d-----r~~~~~~~~~~~g~---~~~~~~~e~~~~aDvVi~~v 73 (306)
T 3l6d_A 7 SFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWN-----RSPGKAAALVAAGA---HLCESVKAALSASPATIFVL 73 (306)
T ss_dssp CCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEC-----SSHHHHHHHHHHTC---EECSSHHHHHHHSSEEEECC
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHHHHCCC---eecCCHHHHHhcCCEEEEEe
Confidence 4568999999 58899999888888888877654 34555555666662 55789999999999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.31 Score=42.38 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=49.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .+++..+++..+...|.++++..+. ++..+.+.+.| +..+++++++++++|+|+.-.
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~-----~~~~~~~~~~g---~~~~~~~~~~~~~aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRS-----PEKAEELAALG---AERAATPCEVVESCPVTFAML 65 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS-----GGGGHHHHHTT---CEECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCC-----HHHHHHHHHCC---CeecCCHHHHHhcCCEEEEEc
Confidence 6899999 4889999998888889988876543 23334455555 356789999999999999864
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=90.62 E-value=1 Score=40.99 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhc---CC----cEEEEeC-CCCCCC-CHHHHHHHHHhC---CCeEEEEcCHHHHh
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASV---IP----FHFVCAC-PKGFEP-DKETVEKARKAG---ISKIEITNDPKEVV 170 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~---~g----~~~~~~~-P~~~~~-~~~~~~~~~~~g---~~~i~~~~d~~~a~ 170 (261)
+.....||+++|-.+++..+++.+++. +| .++.+.- |+.... .-..+| +.... ...+..+.|.++++
T Consensus 20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D-L~~~~~~~~~~~~~~~~~~~a~ 98 (345)
T 4h7p_A 20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE-LEDCAFPLLDKVVVTADPRVAF 98 (345)
T ss_dssp --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHHTTCTTEEEEEEESCHHHHT
T ss_pred CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh-hhhcCccCCCcEEEcCChHHHh
Confidence 346778999999889999998776543 44 3565543 111100 001111 22211 24577889999999
Q ss_pred CCCCEEEEec-ccCcchhHHHH---HHHhhhcCCcccHHHHHhcCCCcEEee-CCCC
Q 024871 171 QGADVVYSDV-WASMGQKEEAA---YRKQAFQGFQVDEFLMKLAGPKAYFMH-CLPA 222 (261)
Q Consensus 171 ~~aDviy~~~-w~~~~~~~~~~---~~~~~~~~y~v~~~~~~~a~~~~~~mH-~lP~ 222 (261)
+|||+|+... .++..-++|.+ ...+.+ -.+-+++.+.+.|+++++- .=|+
T Consensus 99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~--~~~~~~i~~~a~~~~~vlvvsNPv 153 (345)
T 4h7p_A 99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIF--KEQGEAIAAVAASDCRVVVVGNPA 153 (345)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHH--HHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHhHHHH--HHHHHHHHhhccCceEEEEeCCCc
Confidence 9999988863 22222223321 111111 1134455555678886543 3353
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.43 Score=42.30 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||++||- +++..+++..+...|. ++++..+.. .++..+.+++.| +..+++++++++++|+|+.-.
T Consensus 24 ~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~~~dr~~---~~~~~~~~~~~g---~~~~~~~~e~~~~aDvVi~~v 91 (312)
T 3qsg_A 24 AMKLGFIGF-GEAASAIASGLRQAGAIDMAAYDAAS---AESWRPRAEELG---VSCKASVAEVAGECDVIFSLV 91 (312)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHHSCCEEEEECSSC---HHHHHHHHHHTT---CEECSCHHHHHHHCSEEEECS
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCeEEEEcCCC---CHHHHHHHHHCC---CEEeCCHHHHHhcCCEEEEec
Confidence 479999994 8888888888777788 887765421 234455566666 356789999999999999864
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.75 Score=40.81 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- +++..+++..+..-|. ++++.....-......++.... .+ ..++..+.| .+++++||+|+...
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECC
Confidence 48999997 8888888777666565 7777654221111111121111 11 235776778 88999999988864
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.76 Score=41.36 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=47.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEE
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy 177 (261)
|+.+..||+++|- +++..+++..+..-|. ++++.....-......++.... .+ ..++..+.|. +++++||+|+
T Consensus 3 ~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVI 80 (324)
T 3gvi_A 3 GSMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVI 80 (324)
T ss_dssp ---CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEE
T ss_pred CCCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEE
Confidence 3456789999996 8888888877766666 8887765332221122222111 11 2456667786 8999999988
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
...
T Consensus 81 iaa 83 (324)
T 3gvi_A 81 VTA 83 (324)
T ss_dssp ECC
T ss_pred Ecc
Confidence 863
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=1.2 Score=40.62 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEE----EcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEI----TNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~----~~d~~~a~~~aDviy~ 178 (261)
.+.|++|+++|- +++....+..+..+|++++...+. ++-++.+++ .|. .+.. ..++++.++++|+|+.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~-----~~~l~~~~~~~g~-~~~~~~~~~~~l~~~l~~aDvVi~ 237 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDIN-----IDKLRQLDAEFCG-RIHTRYSSAYELEGAVKRADLVIG 237 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTTT-SSEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHhcCC-eeEeccCCHHHHHHHHcCCCEEEE
Confidence 378999999996 889999999999999988776543 344455555 452 2211 2356788899999998
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCL 220 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~l 220 (261)
..-.... -.+..++++.++..++..++.-..
T Consensus 238 ~~~~p~~-----------~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 238 AVLVPGA-----------KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCCTTS-----------CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCcCCC-----------CCcceecHHHHhcCCCCcEEEEEe
Confidence 6411111 123556888888888877776654
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.93 Score=39.50 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc---EEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF---HFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~---~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+||+++|- +++..+++..+..-|. +++++.+. ++..+.+.+ .| +..+.|..++++++|+|+.-.
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~-----~~~~~~l~~~~g---i~~~~~~~~~~~~aDvVilav 71 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRS-----LDKLDFFKEKCG---VHTTQDNRQGALNADVVVLAV 71 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSS-----SHHHHHHHHTTC---CEEESCHHHHHSSCSEEEECS
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCC-----HHHHHHHHHHcC---CEEeCChHHHHhcCCeEEEEe
Confidence 578999996 8899999888877776 67766553 233444444 35 356789999999999999865
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.78 E-value=1.2 Score=38.99 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++| .+++..+++..+...|.++++..+ +++..+.+.+.|.. ..+.+++++++++|+|+.-.
T Consensus 7 ~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr-----~~~~~~~~~~~g~~--~~~~~~~e~~~~aDvvi~~v 72 (303)
T 3g0o_A 7 DFHVGIVG-LGSMGMGAARSCLRAGLSTWGADL-----NPQACANLLAEGAC--GAAASAREFAGVVDALVILV 72 (303)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTTCS--EEESSSTTTTTTCSEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEEC-----CHHHHHHHHHcCCc--cccCCHHHHHhcCCEEEEEC
Confidence 46899999 588999999888888998886643 45555666666632 23778999999999999864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.64 E-value=1.5 Score=39.87 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCC---CEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGA---DVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~a---Dviy~~~ 180 (261)
++++||++|| .+++..+++..+...|.++++... .++..+.+.+.|. ..+.+++++++++ |+|++-.
T Consensus 20 m~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr-----~~~~~~~l~~~g~---~~~~s~~e~~~~a~~~DvVi~~v 89 (358)
T 4e21_A 20 FQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDL-----NVNAVQALEREGI---AGARSIEEFCAKLVKPRVVWLMV 89 (358)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHTTTC---BCCSSHHHHHHHSCSSCEEEECS
T ss_pred hcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeC-----CHHHHHHHHHCCC---EEeCCHHHHHhcCCCCCEEEEeC
Confidence 4678999999 588999999888888988876643 4455555555552 4578999999999 9998864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=89.57 E-value=9.5 Score=33.31 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCC--cCCCCCCCHHHHHHHHhhh-ccEEEEeeC-Ccch------HHHHhhhCC-C-c
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDD--IQMGKREETRDAARVLCRY-NDIIMARVF-GHQD------ILDLAKFAT-V-P 77 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~--s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~-~~~~------~~~~a~~~~-v-P 77 (261)
+++-.=+..++.++|....|..-.. ..+ ..|.+.+.++.+... ...+-+=.+ +... +.+.|+..+ | -
T Consensus 17 S~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v-~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~l~~~A~~iGAVNT 95 (283)
T 3jyo_A 17 SRTPAMHEAEGLAQGRATVYRRIDTLGSRA-SGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNT 95 (283)
T ss_dssp CSHHHHHHHHHHHTTCCEEEEEEETTSTTT-TTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSEECHHHHHHTCCCE
T ss_pred cccHHHHHHHHHHcCCCeEEEEEEccccCC-CHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhhCCHHHHHhCcceE
Confidence 3444557788899999877753211 111 357889888876543 344444443 2222 123333221 1 2
Q ss_pred EEeC-CC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH
Q 024871 78 VING-LT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK 154 (261)
Q Consensus 78 VINa-~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~ 154 (261)
|++- ++ -..|=|-...=+..+.+....++|++++++|- +.+..+.+..+...|. +++++.-.. .-.+++.+....
T Consensus 96 v~~~~~g~l~G~NTD~~G~~~~l~~~~~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~-~~a~~la~~~~~ 173 (283)
T 3jyo_A 96 VVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDT-SRAQALADVINN 173 (283)
T ss_dssp EEECTTSCEEEECHHHHHHHHHHHHHCTTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSH-HHHHHHHHHHHH
T ss_pred EEECCCCeEEEecCCHHHHHHHHHHhCcCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHHHHHHh
Confidence 4443 33 23455544444444555545799999999997 6788888888888898 788775421 111122222222
Q ss_pred h-CCCeEEEEc--CHHHHhCCCCEEEEec
Q 024871 155 A-GISKIEITN--DPKEVVQGADVVYSDV 180 (261)
Q Consensus 155 ~-g~~~i~~~~--d~~~a~~~aDviy~~~ 180 (261)
. ....+...+ +++++++++|+|+..+
T Consensus 174 ~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 174 AVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp HHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred hcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 2 112454544 7888999999999875
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.61 Score=41.15 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=50.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++| .+++..+++..+...|.++++..+. ++..+.+.+.| +..+.+++++++++|+|+.-.
T Consensus 19 ~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~-----~~~~~~l~~~g---~~~~~~~~~~~~~aDvvi~~v 85 (310)
T 3doj_A 19 SHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRT-----LSKCDELVEHG---ASVCESPAEVIKKCKYTIAML 85 (310)
T ss_dssp CCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS-----GGGGHHHHHTT---CEECSSHHHHHHHCSEEEECC
T ss_pred ccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHCC---CeEcCCHHHHHHhCCEEEEEc
Confidence 3457999999 4889999998888889988876543 23334455555 356789999999999999864
|
| >3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.44 E-value=2 Score=38.49 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=61.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCC-----CC-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--C
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKG-----FE-PDKETVEKARKAGISKIEITNDP-----KEVV--Q 171 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~-----~~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~ 171 (261)
.+||+|+|-..--+.++-.+... |.++ ++..|+. .. .+..+.+.|+++|+. +....++ .+.+ .
T Consensus 2 ~mrivf~Gtp~fa~~~L~~L~~~-~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp-v~~~~~~~~~~~~~~l~~~ 79 (314)
T 3tqq_A 2 SLKIVFAGTPQFAVPTLRALIDS-SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIP-IIQPFSLRDEVEQEKLIAM 79 (314)
T ss_dssp CCEEEEEECSGGGHHHHHHHHHS-SSEEEEEECCCC----------CCHHHHHHHHTTCC-EECCSCSSSHHHHHHHHTT
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCC-EECcccCCCHHHHHHHHhc
Confidence 47999999876666666444432 4443 3333432 11 133466788888864 3222222 1223 3
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+.|+|++-.| .+.|.+++++..+-.++-+|| ||.+||
T Consensus 80 ~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG 118 (314)
T 3tqq_A 80 NADVMVVVAY-----------------GLILPKKALNAFRLGCVNVHASLLPRWRG 118 (314)
T ss_dssp CCSEEEEESC-----------------CSCCCHHHHTSSTTCEEEEESSCTTTTBS
T ss_pred CCCEEEEcCc-----------------ccccCHHHHhhCcCCEEEecCccccCCCC
Confidence 6788888754 245788888877778999999 899885
|
| >3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.43 E-value=3.4 Score=34.94 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=29.3
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+.|+|..-.|. ..|.+++++..+..++-+|| ||.+||.
T Consensus 81 ~~Dliv~agy~-----------------~Il~~~~l~~~~~~~iNiHpSLLP~yrG~ 120 (211)
T 3p9x_A 81 QIDFVVLAGYM-----------------RLVGPTLLGAYEGRIVNIHPSLLPAFPGL 120 (211)
T ss_dssp TCCEEEESSCC-----------------SCCCHHHHHHHTTSEEEEESSCTTSSCSS
T ss_pred CCCEEEEeCch-----------------hhcCHHHHhhccCCeEEECCccCCCCCCc
Confidence 57888877542 45788888888878999999 8998853
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.38 E-value=0.95 Score=38.46 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=47.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.++++..+. -.++..+.+.+.|. . .+++++++++|+|+.-.
T Consensus 1 M~I~iIG-~G~mG~~la~~l~~~g~~V~~~~~~---~~~~~~~~~~~~g~---~--~~~~~~~~~aDvvi~~v 64 (264)
T 1i36_A 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEG---RSPSTIERARTVGV---T--ETSEEDVYSCPVVISAV 64 (264)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTT---CCHHHHHHHHHHTC---E--ECCHHHHHTSSEEEECS
T ss_pred CeEEEEe-chHHHHHHHHHHHHCCCeEEEeCCc---cCHHHHHHHHHCCC---c--CCHHHHHhcCCEEEEEC
Confidence 3799999 5889999988887888888875441 14455555666663 2 67788999999999864
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=89.34 E-value=1.7 Score=38.54 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++|- +++..+++..+..-|. ++++.-.+.- ......+... .....+..+.|. +++++||+|+...
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~-~~~~~i~~t~d~-~~l~~aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEI-FNLPNVEISKDL-SASAHSKVVIFTV 85 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHH-HTCTTEEEESCG-GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhh-hcCCCeEEeCCH-HHHCCCCEEEEcC
Confidence 479999995 6655555544444344 7777765331 2222233333 222467888887 8899999999874
|
| >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 | Back alignment and structure |
|---|
Probab=89.29 E-value=1.9 Score=36.77 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=81.1
Q ss_pred ccCCChhhHHHHHHHHHhcCCeE--EEeCCCCcCCCCCCCHHHHHHH----Hhhh-ccEEEEeeCCcchHHHHhhhCCCc
Q 024871 5 FAKPSMRTRVSFETGFSLLGGHA--IYLGPDDIQMGKREETRDAARV----LCRY-NDIIMARVFGHQDILDLAKFATVP 77 (261)
Q Consensus 5 F~~~StRTR~SFe~A~~~LGg~~--~~l~~~~s~~~kgEs~~Dt~~~----ls~~-~D~iv~R~~~~~~~~~~a~~~~vP 77 (261)
|-=|..|-+--|+..+..++... ..++. ++++.... +..- +|+|+-|. +....+.++.++|
T Consensus 17 ~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~---------~le~av~~a~~~~~~~~~dVIISRG---gta~~Lr~~~~iP 84 (225)
T 2pju_A 17 WTVSVTRLFELFRDISLEFDHLANITPIQL---------GFEKAVTYIRKKLANERCDAIIAAG---SNGAYLKSRLSVP 84 (225)
T ss_dssp EEECCHHHHHHHHHHHTTTTTTCEEEEECC---------CHHHHHHHHHHHTTTSCCSEEEEEH---HHHHHHHTTCSSC
T ss_pred EEEchHHHHHHHHHHHHhhCCCceEEEecC---------cHHHHHHHHHHHHhcCCCeEEEeCC---hHHHHHHhhCCCC
Confidence 44455666667787888877642 22221 23333332 3333 79999994 3455566778999
Q ss_pred EEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC
Q 024871 78 VINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI 157 (261)
Q Consensus 78 VINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~ 157 (261)
||.---+. -|++......... +.||++||- .|+...+-..+..+|+++.+......+--+..++.+++.|.
T Consensus 85 VV~I~vs~-------~Dil~aL~~a~~~-~~kIavVg~-~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~ 155 (225)
T 2pju_A 85 VILIKPSG-------YDVLQFLAKAGKL-TSSIGVVTY-QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGT 155 (225)
T ss_dssp EEEECCCH-------HHHHHHHHHTTCT-TSCEEEEEE-SSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEecCCH-------HHHHHHHHHHHhh-CCcEEEEeC-chhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCC
Confidence 99964322 4766666555543 459999996 45566666667777877666543332222344556666663
Q ss_pred CeEEEE
Q 024871 158 SKIEIT 163 (261)
Q Consensus 158 ~~i~~~ 163 (261)
.+.+-
T Consensus 156 -~vVVG 160 (225)
T 2pju_A 156 -EAVVG 160 (225)
T ss_dssp -CEEEE
T ss_pred -CEEEC
Confidence 34443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.24 E-value=1.5 Score=37.57 Aligned_cols=65 Identities=20% Similarity=0.075 Sum_probs=48.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.+++++.+ +++..+.+++.|.. ...+.|++++ +++|+|+.-.
T Consensus 1 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~-----~~~~~~~~~~~g~~-~~~~~~~~~~-~~~D~vi~av 65 (279)
T 2f1k_A 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSR-----QQSTCEKAVERQLV-DEAGQDLSLL-QTAKIIFLCT 65 (279)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTTSC-SEEESCGGGG-TTCSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHhCCCC-ccccCCHHHh-CCCCEEEEEC
Confidence 3799999 688999999888888888877654 34445556666632 2357788888 9999999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.48 Score=40.37 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=46.6
Q ss_pred hCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH--------------HHH-HHHhCCCeEEEEcCH
Q 024871 102 VGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET--------------VEK-ARKAGISKIEITNDP 166 (261)
Q Consensus 102 ~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~--------------~~~-~~~~g~~~i~~~~d~ 166 (261)
..++.++||+++| .+++..+++..+...|.++++.... ++. .+. +.+.|. + ...++
T Consensus 14 ~~~~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 84 (245)
T 3dtt_A 14 NLYFQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRD-----PKATLARAEPDAMGAPPFSQWLPEHPH--V-HLAAF 84 (245)
T ss_dssp -----CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESC-----HHHHHTCC-------CCHHHHGGGSTT--C-EEEEH
T ss_pred ccccCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC-----hhhhhhhhhhhhhcchhhhHHHhhcCc--e-eccCH
Confidence 3468899999999 5889999998888889888876542 221 111 222332 2 35678
Q ss_pred HHHhCCCCEEEEec
Q 024871 167 KEVVQGADVVYSDV 180 (261)
Q Consensus 167 ~~a~~~aDviy~~~ 180 (261)
+++++++|+|+.-.
T Consensus 85 ~e~~~~aDvVilav 98 (245)
T 3dtt_A 85 ADVAAGAELVVNAT 98 (245)
T ss_dssp HHHHHHCSEEEECS
T ss_pred HHHHhcCCEEEEcc
Confidence 99999999999864
|
| >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.98 E-value=2.6 Score=35.21 Aligned_cols=99 Identities=12% Similarity=0.230 Sum_probs=60.6
Q ss_pred hHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHH-H----HhCC----------CeEEEEcCHHHHhCCCC-------E
Q 024871 119 IVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKA-R----KAGI----------SKIEITNDPKEVVQGAD-------V 175 (261)
Q Consensus 119 v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~-~----~~g~----------~~i~~~~d~~~a~~~aD-------v 175 (261)
=+|+.+.++..||+ +++++.|...+ .+..... . ..|. ...++.++++||+++++ .
T Consensus 30 dihdiARamkt~Gl~~l~LV~P~~~~--~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~g~~p~ 107 (192)
T 3dcm_X 30 DVHDIARTARTYNLKGYYIVTNLRAQ--QDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPL 107 (192)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCHHH--HHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCCE
T ss_pred cHHHHHHHHHhcCCceEEEECCcccc--HHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhcCCccE
Confidence 38999999999996 89999997421 1111111 0 1121 46788999999999999 5
Q ss_pred EEEec----ccCcchhHHHHHHH-hh-------h-cCCcccHHHHHhcCCCcEEeeCCCCC
Q 024871 176 VYSDV----WASMGQKEEAAYRK-QA-------F-QGFQVDEFLMKLAGPKAYFMHCLPAE 223 (261)
Q Consensus 176 iy~~~----w~~~~~~~~~~~~~-~~-------~-~~y~v~~~~~~~a~~~~~~mH~lP~~ 223 (261)
++.++ |.... .++..++. +. | ..|+++.|.|+.+. .++-|.|.+
T Consensus 108 vvaTsAr~~~~~i~-~~el~~~i~~~~~pvalvFG~~~GLtneel~~cd---~~l~~Ip~~ 164 (192)
T 3dcm_X 108 IFFTSAKKRENDIS-FEEGRRIIIETEKPVLILLGTGWGLPDEILEISD---YVLEPIRAQ 164 (192)
T ss_dssp EEECCSSCCSSCBC-HHHHHHHHHHCCSCEEEEECCTTCCCHHHHTTCS---EEBCCTTTT
T ss_pred EEEeCCCcCCCCCC-HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHhcC---EEEccCCCC
Confidence 55543 22222 22221222 11 1 25889999988774 455577764
|
| >2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.62 Score=44.42 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHH-hcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH---HhC--CCCEE
Q 024871 103 GRLEGTKVVYVGDGNNIVHSWLLMA-SVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE---VVQ--GADVV 176 (261)
Q Consensus 103 g~l~~~~i~~vGd~~~v~~S~~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~---a~~--~aDvi 176 (261)
..+.|+|+++.||. --+.|++..+ .-+|++++.++-..-...+...+.+++.+ ..+.+.+|+.+ .++ +.|++
T Consensus 299 ~~l~Gkrv~i~gd~-~~~~~l~~~L~~elGm~vv~~gt~~~~~~~~~~~~l~~~~-~~v~~~~D~~el~~~i~~~~pDl~ 376 (511)
T 2xdq_B 299 QNLTGKKAVVFGDN-THAAAMTKILSREMGIHVVWAGTYCKYDADWFRAEVAGFC-DEVLITDDHTVVGDAIARVEPAAI 376 (511)
T ss_dssp HTTTTCEEEEEECH-HHHHHHHHHHHHHHCCEEEEEEESCGGGHHHHHHHHTTTS-SEEEECCCHHHHHHHHHHHCCSEE
T ss_pred HhccCCEEEEEcCC-hHHHHHHHHHHHhCCCEEEEeecCCCCchHHHHHHHHhcC-CcEEEeCCHHHHHHHHHhcCCCEE
Confidence 35899999999984 3467777777 67899987654332222233333344444 35667777643 333 67988
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 377 ig~~ 380 (511)
T 2xdq_B 377 FGTQ 380 (511)
T ss_dssp EECH
T ss_pred Eecc
Confidence 8864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=1.2 Score=40.01 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHH---HHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKA---RKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~---~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++|. +.+..+++..++.-|. ++++...+.-.......+.. ...+ ..++..+.|+++++++||+|+...
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 469999996 8888888877776675 77776543311111111111 1112 246778899999999999999864
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.4 Score=39.01 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=49.7
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhc-CCc-EEEEeCCCCCCCCHHHHHHH-HHhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASV-IPF-HFVCACPKGFEPDKETVEKA-RKAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~-~g~-~~~~~~P~~~~~~~~~~~~~-~~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
++...++++|+++|- +++..+++..+.. +|. ++.+..+ .++-.+.+ ++.+. .+...++++++++++|+|+
T Consensus 129 ~la~~~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr-----~~~~~~~l~~~~~~-~~~~~~~~~e~v~~aDiVi 201 (312)
T 2i99_A 129 FLKPPSSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNR-----TKENAEKFADTVQG-EVRVCSSVQEAVAGADVII 201 (312)
T ss_dssp HHSCTTCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECS-----SHHHHHHHHHHSSS-CCEECSSHHHHHTTCSEEE
T ss_pred HhCCCCCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcC-----CHHHHHHHHHHhhC-CeEEeCCHHHHHhcCCEEE
Confidence 456678899999995 7777777766544 476 6766644 33333333 33341 3566789999999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
+-.
T Consensus 202 ~at 204 (312)
T 2i99_A 202 TVT 204 (312)
T ss_dssp ECC
T ss_pred EEe
Confidence 864
|
| >1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 | Back alignment and structure |
|---|
Probab=88.80 E-value=2 Score=41.26 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC 138 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~ 138 (261)
.+.|+|+++.||.. -+++++..+.-+|++++.++
T Consensus 332 ~l~GKrv~i~~~~~-~~~~l~~~l~ElGm~vv~~~ 365 (533)
T 1mio_A 332 KLQGKTACLYVGGS-RSHTYMNMLKSFGVDSLVAG 365 (533)
T ss_dssp HHTTCEEEEEESSS-HHHHHHHHHHHHTCEEEEEE
T ss_pred HhCCCEEEEECCch-HHHHHHHHHHHCCCEEEEEE
Confidence 47899999999864 56777777778899988764
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.78 E-value=1.1 Score=38.78 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=48.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++...++..+...|.++++..+ +++..+.+++.| +..+.+++++++++|+|+.-.
T Consensus 6 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~-----~~~~~~~~~~~g---~~~~~~~~~~~~~~D~vi~~v 69 (299)
T 1vpd_A 6 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDR-----NPEAIADVIAAG---AETASTAKAIAEQCDVIITML 69 (299)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTT---CEECSSHHHHHHHCSEEEECC
T ss_pred ceEEEEC-chHHHHHHHHHHHhCCCEEEEEeC-----CHHHHHHHHHCC---CeecCCHHHHHhCCCEEEEEC
Confidence 5899999 588888888877777888876644 344445555555 356788999999999999864
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.43 Score=42.21 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=43.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+||| .+++...++.-+.+-|.++++.- ..++..+.+.+.| ....+++.|+++++|+|++-.
T Consensus 6 ~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~d-----r~~~~~~~l~~~G---~~~~~s~~e~~~~~dvvi~~l 69 (297)
T 4gbj_A 6 EKIAFLG-LGNLGTPIAEILLEAGYELVVWN-----RTASKAEPLTKLG---ATVVENAIDAITPGGIVFSVL 69 (297)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEC------------CTTTTTT---CEECSSGGGGCCTTCEEEECC
T ss_pred CcEEEEe-cHHHHHHHHHHHHHCCCeEEEEe-----CCHHHHHHHHHcC---CeEeCCHHHHHhcCCceeeec
Confidence 5899999 57777777777777788877543 2222222233445 356889999999999999864
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.44 E-value=1.4 Score=41.27 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=48.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh-----------------CCCeEEEEcCHHHHh
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA-----------------GISKIEITNDPKEVV 170 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~-----------------g~~~i~~~~d~~~a~ 170 (261)
.||+++|- +++..+++..++..|.++++... +++.++.+++. ..+.+..+.|+++++
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~-----~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~ 76 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGANVRCIDT-----DRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAV 76 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHG
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCCEEEEEEC-----CHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHH
Confidence 58999994 88998998888888988886653 33333333320 013578899999999
Q ss_pred CCCCEEEEec
Q 024871 171 QGADVVYSDV 180 (261)
Q Consensus 171 ~~aDviy~~~ 180 (261)
++||+|+.-.
T Consensus 77 ~~aDvViiaV 86 (450)
T 3gg2_A 77 PEADIIFIAV 86 (450)
T ss_dssp GGCSEEEECC
T ss_pred hcCCEEEEEc
Confidence 9999998754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=88.42 E-value=1.1 Score=38.82 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+||+++| .+++...++..+...|.+++++.+ +++..+.+.+.| +..+.+++++++++|+|+.-.
T Consensus 4 ~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~-----~~~~~~~~~~~g---~~~~~~~~~~~~~~D~vi~~v 68 (301)
T 3cky_A 4 SIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDL-----MEANVAAVVAQG---AQACENNQKVAAASDIIFTSL 68 (301)
T ss_dssp CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECS-----SHHHHHHHHTTT---CEECSSHHHHHHHCSEEEECC
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeC-----CHHHHHHHHHCC---CeecCCHHHHHhCCCEEEEEC
Confidence 36899999 578888888877777888876644 344444444444 356788999999999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.35 E-value=1.9 Score=39.09 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=64.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEE----EcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-AGISKIEI----TNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~----~~d~~~a~~~aDviy~ 178 (261)
.+.+++|+++|- +++....+..+..+|++++.+.+. ++-.+.+++ .| ..+.. .++++++++++|+|+.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~-----~~~~~~~~~~~g-~~~~~~~~~~~~l~~~~~~~DvVi~ 235 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVN-----HKRLQYLDDVFG-GRVITLTATEANIKKSVQHADLLIG 235 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTT-TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHhcC-ceEEEecCCHHHHHHHHhCCCEEEE
Confidence 378899999997 899999999999999998877543 333444544 44 33321 2346678899999988
Q ss_pred ecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 179 DVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 179 ~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
.. +.... ..++.++++.++..++..++.-.
T Consensus 236 ~~----g~~~~-------~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 236 AV----LVPGA-------KAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp CC----C--------------CCSCHHHHTTSCTTCEEEEC
T ss_pred CC----CCCcc-------ccchhHHHHHHHhhcCCCEEEEE
Confidence 64 21110 12355677887777776665543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=0.65 Score=41.85 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCC--CeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGI--SKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~--~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..||+++|- +++..+++..+...|. ++++.-...-......++....... ..+.++.+..+++++||+|+...
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA 81 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence 3579999994 8888888877766565 7777654210011111111111110 13344444467999999988864
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=88.25 E-value=1.6 Score=39.93 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=48.7
Q ss_pred hC--CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHH-HHHHHHhCCCeEEEEcCHHHHhC-CCCEEE
Q 024871 102 VG--RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKET-VEKARKAGISKIEITNDPKEVVQ-GADVVY 177 (261)
Q Consensus 102 ~g--~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~-~~~~~~~g~~~i~~~~d~~~a~~-~aDviy 177 (261)
+| +++|++|+++|- +||....+..+..+|++++++-+ +++- .+.+++.|. +.. +.++.+. ++||+.
T Consensus 166 ~G~~~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~-----~~~~l~~~a~~~ga---~~v-~~~~ll~~~~DIvi 235 (364)
T 1leh_A 166 FGSDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDV-----NKAAVSAAVAEEGA---DAV-APNAIYGVTCDIFA 235 (364)
T ss_dssp HSSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHHHCC---EEC-CGGGTTTCCCSEEE
T ss_pred ccccCCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcC-----CHHHHHHHHHHcCC---EEE-ChHHHhccCCcEee
Confidence 57 699999999995 88999999999999999886543 3332 234555562 222 4455554 899998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.-.
T Consensus 236 p~a 238 (364)
T 1leh_A 236 PCA 238 (364)
T ss_dssp ECS
T ss_pred ccc
Confidence 754
|
| >1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B* | Back alignment and structure |
|---|
Probab=88.24 E-value=4.3 Score=38.77 Aligned_cols=164 Identities=9% Similarity=0.029 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCeEEEeCC-CC----------cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC
Q 024871 15 SFETGFSLLGGHAIYLGP-DD----------IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT 83 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~~-~~----------s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~ 83 (261)
....=...+|..++.+.. +. +.+..|-+++|..+.-++-+.+++-+.......+.+.+.-++|.|.+..
T Consensus 235 eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~i~~~~ 314 (519)
T 1qgu_B 235 VLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAI 314 (519)
T ss_dssp HHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCCCCCCC
T ss_pred HHHHHHHHcCCeEEEecCccccccCcccCcccccCCCCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCeEecCC
Confidence 344456789999986532 11 3445678999998876666666665544455667888888999887532
Q ss_pred C-CCChh----HHHHHHHH------H-----------HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC
Q 024871 84 D-YNHPC----QIMADALT------I-----------IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG 141 (261)
Q Consensus 84 ~-~~HPt----Q~L~Dl~T------i-----------~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~ 141 (261)
. +-..| +.|+.++- + ......+.|+|+++.|| ...+.|++..+.-+|++++.++-..
T Consensus 315 PiG~~~T~~~L~~la~~~g~~~~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd-~~~~~~la~~L~ElGm~vv~v~~~~ 393 (519)
T 1qgu_B 315 PLGLAATDELLMTVSQLSGKPIADALTLERGRLVDMMLDSHTWLHGKKFGLYGD-PDFVMGLTRFLLELGCEPTVILSHN 393 (519)
T ss_dssp CBSHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESC-HHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECC-chHHHHHHHHHHHCCCEEEEEEeCC
Confidence 0 00101 11111110 0 01112368999999998 3456677777778999876443322
Q ss_pred CCCCHHHHH----HHHHh--C-CCeEEEEcCHHH---HhC--CCCEEEEecc
Q 024871 142 FEPDKETVE----KARKA--G-ISKIEITNDPKE---VVQ--GADVVYSDVW 181 (261)
Q Consensus 142 ~~~~~~~~~----~~~~~--g-~~~i~~~~d~~~---a~~--~aDviy~~~w 181 (261)
. +++..+ .+++. | ...+....|..+ .++ +.|+++...+
T Consensus 394 ~--~~~~~~~~~~ll~~~~~~~~~~v~~~~d~~~l~~~i~~~~pDLiig~~~ 443 (519)
T 1qgu_B 394 A--NKRWQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSY 443 (519)
T ss_dssp C--CHHHHHHHHHHHHHSTTCTTCEEEESCCHHHHHHHHHHHCCSEEEECGG
T ss_pred C--CHHHHHHHHHHHHhcCCCCCCEEEECCCHHHHHHHHhhcCCCEEEECcc
Confidence 2 332222 23333 2 134444446543 343 5899998753
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.4 Score=41.63 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=47.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .+++..+++..+...|.++++..+. ++..+.+.+.| +..+++++++++++|+|+.-.
T Consensus 2 ~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~-----~~~~~~~~~~g---~~~~~~~~~~~~~advvi~~v 65 (287)
T 3pdu_A 2 TTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRN-----PAKCAPLVALG---ARQASSPAEVCAACDITIAML 65 (287)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSS-----GGGGHHHHHHT---CEECSCHHHHHHHCSEEEECC
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCC-----HHHHHHHHHCC---CeecCCHHHHHHcCCEEEEEc
Confidence 4799999 5888888888877778888776543 23334455555 356789999999999999864
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.49 Score=44.61 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=53.1
Q ss_pred HHHhCCCCCcEEEEEcCC-----Cch----HHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHH
Q 024871 99 IEHVGRLEGTKVVYVGDG-----NNI----VHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKE 168 (261)
Q Consensus 99 ~e~~g~l~~~~i~~vGd~-----~~v----~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~ 168 (261)
.+.++.++|+||++.|=. ..+ +..++..+...|.++.+.-|.- .+.++ ..| ..+...+|+++
T Consensus 325 ~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~-------~~~~~~~~~-~~~~~~~~~~~ 396 (444)
T 3vtf_A 325 EERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMA-------MEKARAVLG-DSVTYVEDPQA 396 (444)
T ss_dssp HHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSST-------HHHHHHHHG-GGSEECSCHHH
T ss_pred HHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCC-------ChHHHHhcC-CCceecCCHHH
Confidence 455678999999999932 123 4446677778899999888843 12222 234 35778899999
Q ss_pred HhCCCCEEEE-eccc
Q 024871 169 VVQGADVVYS-DVWA 182 (261)
Q Consensus 169 a~~~aDviy~-~~w~ 182 (261)
++++||+|.. +.|.
T Consensus 397 a~~~aDavvi~t~h~ 411 (444)
T 3vtf_A 397 LLDQVEGVIIATAWP 411 (444)
T ss_dssp HHHHCSEEEECSCCG
T ss_pred HHhCCCEEEEccCCH
Confidence 9999997665 5574
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=0.69 Score=41.72 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHH-HHHH--hCC---CeEEEEcCHHHHhCCCCEE
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVE-KARK--AGI---SKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~-~~~~--~g~---~~i~~~~d~~~a~~~aDvi 176 (261)
-.+.||+++|- ++|..+++..+..-|. ++++.-. .++..+ .+.+ .+. ..+.++.+..+++++||+|
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~-----~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiV 80 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI-----FKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLV 80 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS-----CHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeC-----ChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEE
Confidence 45689999994 8899888877766554 7777654 222221 1111 110 2345556667899999998
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 81 vi~a 84 (326)
T 3vku_A 81 VITA 84 (326)
T ss_dssp EECC
T ss_pred EECC
Confidence 8864
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.13 E-value=1.1 Score=39.81 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh----CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA----GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~----g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.-+||+++|- +.+..+++..++ -|.++++.- ..++.++.+.+. ..+.+..++|+++ +++||+|+.-.
T Consensus 11 ~~~~V~vIG~-G~MG~~iA~~la-aG~~V~v~d-----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieav 81 (293)
T 1zej_A 11 HHMKVFVIGA-GLMGRGIAIAIA-SKHEVVLQD-----VSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAV 81 (293)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHH-TTSEEEEEC-----SCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECC
T ss_pred CCCeEEEEee-CHHHHHHHHHHH-cCCEEEEEE-----CCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcC
Confidence 3589999994 788999988888 899988664 345555655554 0014677888876 99999999964
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.04 E-value=1.7 Score=38.78 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH--hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK--AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~--~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++|- ++|..+++..+..-|. ++++.--+.-.......+.... .. ..++++.+..+++++||+|+...
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~-~~~~i~~~~~~a~~~aDvVii~~ 82 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFM-GQMSLYAGDYSDVKDCDVIVVTA 82 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCT-TCEEEC--CGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhc-CCeEEEECCHHHhCCCCEEEEcC
Confidence 479999996 8888888877766665 7887765432233223222111 11 23444434478899999999874
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=87.89 E-value=0.71 Score=39.15 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=48.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc----EEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF----HFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~----~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .+++..+++..+..-|. ++++..+ .++..+.+. +.| +..+.|.+++++++|+|+.-.
T Consensus 3 ~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r-----~~~~~~~~~~~~g---~~~~~~~~e~~~~aDvVilav 71 (247)
T 3gt0_A 3 KQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDL-----NTANLKNASEKYG---LTTTTDNNEVAKNADILILSI 71 (247)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECS-----CHHHHHHHHHHHC---CEECSCHHHHHHHCSEEEECS
T ss_pred CeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeC-----CHHHHHHHHHHhC---CEEeCChHHHHHhCCEEEEEe
Confidence 5899999 58899999888877776 7776654 344444443 456 356789999999999999865
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=87.85 E-value=0.83 Score=42.08 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=53.2
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.++.+.|++|+++|- +.+....+..+..+|+ +++++.+.. +...+.+++.|. ...-.+++++.++++|+|+..
T Consensus 161 ~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~----~ra~~la~~~g~-~~~~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 161 ELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY----ERAVELARDLGG-EAVRFDELVDHLARSDVVVSA 234 (404)
T ss_dssp HHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH----HHHHHHHHHHTC-EECCGGGHHHHHHTCSEEEEC
T ss_pred HhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHHcCC-ceecHHhHHHHhcCCCEEEEc
Confidence 356789999999996 8899998888888898 888876531 111234556663 221135778889999999987
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 235 t 235 (404)
T 1gpj_A 235 T 235 (404)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=1.7 Score=36.82 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=55.7
Q ss_pred CcEEEEE--cCCCchHHHHHHHHhc-CCcEEE--EeCCCCCCCCHHHHHHHHHhCCCeEEEEc-----------CHHHHh
Q 024871 107 GTKVVYV--GDGNNIVHSWLLMASV-IPFHFV--CACPKGFEPDKETVEKARKAGISKIEITN-----------DPKEVV 170 (261)
Q Consensus 107 ~~~i~~v--Gd~~~v~~S~~~~~~~-~g~~~~--~~~P~~~~~~~~~~~~~~~~g~~~i~~~~-----------d~~~a~ 170 (261)
.+||++. |-+. .+..++..... ++.+++ +.-|+ ...++.|+++|+..+.... .+.+.+
T Consensus 12 ~~ri~vl~SG~gs-nl~all~~~~~~~~~eI~~Vis~~~-----a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l 85 (215)
T 3da8_A 12 PARLVVLASGTGS-LLRSLLDAAVGDYPARVVAVGVDRE-----CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAAT 85 (215)
T ss_dssp SEEEEEEESSCCH-HHHHHHHHSSTTCSEEEEEEEESSC-----CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred CcEEEEEEeCChH-HHHHHHHHHhccCCCeEEEEEeCCc-----hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH
Confidence 3578877 4433 33444444322 444543 22232 2346678888865444311 011222
Q ss_pred --CCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 171 --QGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 171 --~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
.+.|+|..-.|. ..+.+++++..+..++=+|| ||.+||
T Consensus 86 ~~~~~Dlivlagy~-----------------~iL~~~~l~~~~~~~iNiHpSLLP~yrG 127 (215)
T 3da8_A 86 AAHEPDLVVSAGFM-----------------RILGPQFLSRFYGRTLNTHPALLPAFPG 127 (215)
T ss_dssp HTTCCSEEEEEECC-----------------SCCCHHHHHHHTTTEEEEESSCTTSSCS
T ss_pred HhhCCCEEEEcCch-----------------hhCCHHHHhhccCCeEEeCcccccCCCC
Confidence 356777776542 34788888888878999999 899886
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=1.9 Score=39.94 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=48.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-----------------CCeEEEEcCHHHHh
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-----------------ISKIEITNDPKEVV 170 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------------~~~i~~~~d~~~a~ 170 (261)
.||+++| .+++..+++..++..|.+++++.. +++.++.+++.+ .+.+..+.|+++++
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~-----~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~ 74 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDV-----SSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAV 74 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHh
Confidence 3799999 588999998888888988877643 233333333210 12578899999999
Q ss_pred CCCCEEEEec
Q 024871 171 QGADVVYSDV 180 (261)
Q Consensus 171 ~~aDviy~~~ 180 (261)
+++|+|+...
T Consensus 75 ~~aDvviiaV 84 (436)
T 1mv8_A 75 LDSDVSFICV 84 (436)
T ss_dssp HTCSEEEECC
T ss_pred ccCCEEEEEc
Confidence 9999998764
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=2.2 Score=39.95 Aligned_cols=72 Identities=6% Similarity=-0.025 Sum_probs=49.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. +.++.+.+..+...|.++++++|+ ..+++.+..++.+. .+....-.++-++++|.|+.-+
T Consensus 9 ~l~~~~vlVvGg-G~va~~k~~~L~~~ga~V~vi~~~---~~~~~~~l~~~~~i-~~~~~~~~~~~l~~~~lVi~at 80 (457)
T 1pjq_A 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALT---FIPQFTVWANEGML-TLVEGPFDETLLDSCWLAIAAT 80 (457)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESS---CCHHHHHHHTTTSC-EEEESSCCGGGGTTCSEEEECC
T ss_pred ECCCCEEEEECC-CHHHHHHHHHHHhCcCEEEEEcCC---CCHHHHHHHhcCCE-EEEECCCCccccCCccEEEEcC
Confidence 588999999995 789999999999999999999985 33444333222222 2222221244588999999864
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=87.73 E-value=1.2 Score=38.52 Aligned_cols=67 Identities=24% Similarity=0.109 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcC--CcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVI--PFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~--g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||++|| .+++..+++..+... |.++++..+ +++..+.+++.|.. ...+.|++++++++|+|+.-.
T Consensus 6 ~~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~d~-----~~~~~~~~~~~g~~-~~~~~~~~~~~~~aDvVilav 74 (290)
T 3b1f_A 6 EKTIYIAG-LGLIGASLALGIKRDHPHYKIVGYNR-----SDRSRDIALERGIV-DEATADFKVFAALADVIILAV 74 (290)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECS-----SHHHHHHHHHTTSC-SEEESCTTTTGGGCSEEEECS
T ss_pred cceEEEEe-eCHHHHHHHHHHHhCCCCcEEEEEcC-----CHHHHHHHHHcCCc-ccccCCHHHhhcCCCEEEEcC
Confidence 46899999 688888888776654 677776544 34555556666631 145678888999999999864
|
| >3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* | Back alignment and structure |
|---|
Probab=87.72 E-value=5.6 Score=38.07 Aligned_cols=163 Identities=11% Similarity=0.021 Sum_probs=90.5
Q ss_pred HHHHHHhcCCeEEEeC-CCC----------cCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCCC-
Q 024871 16 FETGFSLLGGHAIYLG-PDD----------IQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT- 83 (261)
Q Consensus 16 Fe~A~~~LGg~~~~l~-~~~----------s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~- 83 (261)
...=...+|..++.+. .+. ..+..|-|++|..+.=.+-+.+++-+.......+.+.+.-++|.+....
T Consensus 240 lkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~~P 319 (523)
T 3u7q_B 240 IKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEVPKLNIP 319 (523)
T ss_dssp HHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHHHHGGGSSEEEESSGGGCHHHHHHHHHTSCCCCCCCCCS
T ss_pred HHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHHHHhhcCcEEEEEccchHHHHHHHHHHHhCCCeeecCCc
Confidence 3445678999998763 221 1234678999988876666666554434455667777778889876321
Q ss_pred CCCChh----HHHHHHH------HHHH-----------HhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCC
Q 024871 84 DYNHPC----QIMADAL------TIIE-----------HVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGF 142 (261)
Q Consensus 84 ~~~HPt----Q~L~Dl~------Ti~e-----------~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~ 142 (261)
-+-.-| +.|+.++ .+.+ ....+.|+|+++.||. --+.|++..+.-+|++++.+.-...
T Consensus 320 iG~~~T~~~l~~la~~~g~~~~~~i~~er~r~~~~l~d~~~~l~GKrvaI~gd~-~~~~~la~fL~elGm~vv~v~~~~~ 398 (523)
T 3u7q_B 320 MGLDWTDEFLMKVSEISGQPIPASLTKERGRLVDMMTDSHTWLHGKRFALWGDP-DFVMGLVKFLLELGCEPVHILCHNG 398 (523)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSH-HHHHHHHHHHHHTTCEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCc-hHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 001111 2222222 0111 1123789999999983 3456677777779998776542221
Q ss_pred CCCHHHH----HHHHH--hCC-CeEEEEcCHHH---Hh--CCCCEEEEecc
Q 024871 143 EPDKETV----EKARK--AGI-SKIEITNDPKE---VV--QGADVVYSDVW 181 (261)
Q Consensus 143 ~~~~~~~----~~~~~--~g~-~~i~~~~d~~~---a~--~~aDviy~~~w 181 (261)
+++.. +.+++ .|. ..+....|..+ .+ .+.|+|+...|
T Consensus 399 --~~~~~~~~~~~l~~~~~~~~~~v~~~~D~~~l~~~i~~~~pDLlig~s~ 447 (523)
T 3u7q_B 399 --NKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSY 447 (523)
T ss_dssp --CHHHHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHTCCSEEEECTT
T ss_pred --CHHHHHHHHHHHhhccCCCCcEEEECCCHHHHHHHHHhcCCCEEEECcc
Confidence 22222 22222 121 23444445543 33 36899999764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.70 E-value=2.3 Score=38.54 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC-----------CeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----------SKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~-----------~~i~~~~d~~~a~~~aDv 175 (261)
..||+++|- +++..+++..++.-|.++++... +++..+.+++.+. ..+..+.|++++++++|+
T Consensus 29 ~mkI~VIGa-G~mG~alA~~La~~G~~V~l~~r-----~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 29 KHPIAILGA-GSWGTALALVLARKGQKVRLWSY-----ESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHTTTCCEEEECS-----CHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CCeEEEECc-cHHHHHHHHHHHHCCCeEEEEeC-----CHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 478999995 88888998888888888877654 3444555554431 136788999999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.-.
T Consensus 103 VilaV 107 (356)
T 3k96_A 103 ILIVV 107 (356)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99864
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=87.67 E-value=1.1 Score=38.12 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=47.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.++.++.+ +++..+.+. +.|. ..+.|++++++++|+|+.-.
T Consensus 4 m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~-----~~~~~~~~~~~~g~---~~~~~~~~~~~~~D~Vi~~v 68 (259)
T 2ahr_A 4 MKIGIIG-VGKMASAIIKGLKQTPHELIISGS-----SLERSKEIAEQLAL---PYAMSHQDLIDQVDLVILGI 68 (259)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECS-----SHHHHHHHHHHHTC---CBCSSHHHHHHTCSEEEECS
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCCeEEEECC-----CHHHHHHHHHHcCC---EeeCCHHHHHhcCCEEEEEe
Confidence 6899999 588999998888888877766654 334344333 3463 34678999999999999864
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.79 Score=39.61 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.++++..+. ++..+.+.+.| +..+.+++++++++|+|+.-.
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~~V~~~~~~-----~~~~~~~~~~g---~~~~~~~~~~~~~~Dvvi~~v 64 (296)
T 2gf2_A 1 MPVGFIG-LGNMGNPMAKNLMKHGYPLIIYDVF-----PDACKEFQDAG---EQVVSSPADVAEKADRIITML 64 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHHHTTCCEEEECSS-----THHHHHHHTTT---CEECSSHHHHHHHCSEEEECC
T ss_pred CeEEEEe-ccHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcC---CeecCCHHHHHhcCCEEEEeC
Confidence 3799999 5888888888877778888776542 33344444554 356788999999999999864
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=87.35 E-value=4.1 Score=38.66 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=42.5
Q ss_pred CcEEEEEcCCC-chHHHHHHHHhc---C-CcEEEEeCCCCCCCCHHHHHH----HH----HhC-CCeEEEEcCHHHHhCC
Q 024871 107 GTKVVYVGDGN-NIVHSWLLMASV---I-PFHFVCACPKGFEPDKETVEK----AR----KAG-ISKIEITNDPKEVVQG 172 (261)
Q Consensus 107 ~~~i~~vGd~~-~v~~S~~~~~~~---~-g~~~~~~~P~~~~~~~~~~~~----~~----~~g-~~~i~~~~d~~~a~~~ 172 (261)
..||+++|.++ .....++..++. + +-++++..-. ++.++. +. ..+ ..++..+.|+++++++
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~-----~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d 77 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDID-----EERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID 77 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSC-----HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCC-----HHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC
Confidence 47999999754 223433333332 2 6688877543 332221 11 111 2468888999999999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+...
T Consensus 78 AD~VIiaa 85 (480)
T 1obb_A 78 ADFVINTA 85 (480)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999874
|
| >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A | Back alignment and structure |
|---|
Probab=86.88 E-value=1.4 Score=39.23 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=56.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCCC--C-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKGF--E-PDKETVEKARKAGISKIEITNDP-----KEVV--QGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~~--~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDv 175 (261)
+||+|+|...--+.++-.+.. -+.++ ++..|+.- . .+..+.+.|+++|+. +...++. .+.+ .+.|+
T Consensus 1 mrivf~gt~~fa~~~L~~L~~-~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIp-v~~~~~~~~~~~~~~l~~~~~Dl 78 (305)
T 2bln_A 1 MKTVVFAYHDMGCLGIEALLA-AGYEISAIFTHTDNPGEKAFYGSVARLAAERGIP-VYAPDNVNHPLWVERIAQLSPDV 78 (305)
T ss_dssp CEEEEEECHHHHHHHHHHHHH-TTCEEEEEECCCC------CCCCHHHHHHHHTCC-EECCSCCCSHHHHHHHHHTCCSE
T ss_pred CEEEEEEcCHHHHHHHHHHHH-CCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCC-EECCCcCCcHHHHHHHHhcCCCE
Confidence 489999974323333332222 25444 34444321 0 112356778888864 3222221 1222 36788
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
|..-.| ...|.+++++..+-.++-+|| ||.+||
T Consensus 79 iv~~~y-----------------~~ilp~~il~~~~~g~iNiHpSLLP~yRG 113 (305)
T 2bln_A 79 IFSFYY-----------------RHLIYDEILQLAPAGAFNLHGSLLPKYRG 113 (305)
T ss_dssp EEEESC-----------------CSCCCHHHHTTCTTCEEEEESSCTTTTEE
T ss_pred EEEecc-----------------ccccCHHHHhcCcCCEEEecCCcCcCCCC
Confidence 887654 234788888887778999999 799874
|
| >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* | Back alignment and structure |
|---|
Probab=86.87 E-value=4.7 Score=33.82 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.8
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+.|+|..-.|. ..|.+++++..+..++-+|| ||.+||
T Consensus 79 ~~Dliv~a~y~-----------------~il~~~~l~~~~~~~iNiHpSLLP~yrG 117 (209)
T 1meo_A 79 SIDIVCLAGFM-----------------RILSGPFVQKWNGKMLNIHPSLLPSFKG 117 (209)
T ss_dssp TCCEEEEESCC-----------------SCCCHHHHHHTTTSEEEEESSSTTSSCS
T ss_pred CCCEEEEcchh-----------------hhCCHHHHhhhcCCEEEEccCcCcCCCC
Confidence 57888877542 35788888888778999999 799886
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=5.3 Score=37.75 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=41.4
Q ss_pred cEEEEEcCCC-chHHHHHHHHhc---C---CcEEEEeCCCCCCCCHHHHH--------HHHHhC-CCeEEEEcCHHHHhC
Q 024871 108 TKVVYVGDGN-NIVHSWLLMASV---I---PFHFVCACPKGFEPDKETVE--------KARKAG-ISKIEITNDPKEVVQ 171 (261)
Q Consensus 108 ~~i~~vGd~~-~v~~S~~~~~~~---~---g~~~~~~~P~~~~~~~~~~~--------~~~~~g-~~~i~~~~d~~~a~~ 171 (261)
.||++||.++ ...-.++..+.. + +.++++.-. +++.++ .++..| ..+++.+.|.++|++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di-----~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~ 75 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDV-----HERRLNASYILARKYVEELNSPVKVVKTESLDEAIE 75 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECS-----CHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHT
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECC-----CHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhC
Confidence 4899999764 233344433322 2 246776643 333222 122334 246888999999999
Q ss_pred CCCEEEEec
Q 024871 172 GADVVYSDV 180 (261)
Q Consensus 172 ~aDviy~~~ 180 (261)
+||+|++..
T Consensus 76 gAD~Vi~~~ 84 (477)
T 3u95_A 76 GADFIINTA 84 (477)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEECc
Confidence 999999873
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=86.53 E-value=3 Score=37.31 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHH---HhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKAR---KAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~---~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..||+++| .+++..+++..+..-|. ++++.-...-......++... -.+ ..++..+.| .+++++||+|+...
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~a 81 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTA 81 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcC
Confidence 457999999 58888888877766555 887775433111111112111 111 135555666 57999999988863
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=86.37 E-value=0.97 Score=37.66 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
++||+++| .+++..+++..+...|.+++++.+. ++..+.+.+.|. ..+ +.+++++++|+|+...
T Consensus 28 ~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~-----~~~~~~~~~~g~---~~~-~~~~~~~~~DvVi~av 91 (215)
T 2vns_A 28 APKVGILG-SGDFARSLATRLVGSGFKVVVGSRN-----PKRTARLFPSAA---QVT-FQEEAVSSPEVIFVAV 91 (215)
T ss_dssp -CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS-----HHHHHHHSBTTS---EEE-EHHHHTTSCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHcCC---cee-cHHHHHhCCCEEEECC
Confidence 47899999 6899999988888888887766542 333333333342 334 7888999999999864
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=1.6 Score=38.09 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=48.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHH-----------HHhCC---------------CeEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKA-----------RKAGI---------------SKIE 161 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~-----------~~~g~---------------~~i~ 161 (261)
+||+++|- +++..+++..++.-|.++++..+. ++.++.+ .+.|. ..+.
T Consensus 16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~-----~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQT-----EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 58999995 889999988888889998877653 2322221 11221 1477
Q ss_pred EEcCHHHHhCCCCEEEEec
Q 024871 162 ITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 162 ~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|+++++++||+|+.-.
T Consensus 90 ~~~~~~~~~~~aD~Vi~av 108 (302)
T 1f0y_A 90 TSTDAASVVHSTDLVVEAI 108 (302)
T ss_dssp EESCHHHHTTSCSEEEECC
T ss_pred EecCHHHhhcCCCEEEEcC
Confidence 8899999999999999865
|
| >4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=85.99 E-value=3.8 Score=34.49 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
+.|+|..-.|. ..+.+++++..+..++=+|| ||.+||
T Consensus 86 ~~Dliv~agy~-----------------~il~~~~l~~~~~~~iNiHpSLLP~yrG 124 (209)
T 4ds3_A 86 KPDIICLAGYM-----------------RLLSGRFIAPYEGRILNIHPSLLPLFPG 124 (209)
T ss_dssp CCSEEEESSCC-----------------SCCCHHHHGGGTTCEEEEESSCTTSSCS
T ss_pred CCCEEEEeccc-----------------cCcCHHHHhhccCCeEEECCccccCCCC
Confidence 57777776542 34788888888878999999 899885
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.98 E-value=1 Score=40.90 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHH-H---HHHh--CCCeEEEEcCHHHHhCCCCEE
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVE-K---ARKA--GISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~-~---~~~~--g~~~i~~~~d~~~a~~~aDvi 176 (261)
+.+.||+++|-.++|..+++..+...|. +++++-. .++.++ . +... ....+..+.|.++++++||+|
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi-----~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvV 80 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDP-----FAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYI 80 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECS-----CHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeC-----CchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEE
Confidence 5678999999878888888877766663 6766543 222211 1 1111 113577788999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 81 vita 84 (343)
T 3fi9_A 81 VSSG 84 (343)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9864
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=0.95 Score=40.66 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHH-HHHH--hC---CCeEEEEcCHHHHhCCCCEEE
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVE-KARK--AG---ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~-~~~~--~g---~~~i~~~~d~~~a~~~aDviy 177 (261)
+..||+++|- ++|..+++..+..-+. ++++.-- +++.++ .+.+ .+ ...+.++.+..+++++||+|+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di-----~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVi 81 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI-----FKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVV 81 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS-----CHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeC-----CchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEE
Confidence 4579999997 8888887766654443 6766643 222221 1111 11 023445556788999999998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
...
T Consensus 82 i~a 84 (326)
T 2zqz_A 82 ITA 84 (326)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
|
| >1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3 | Back alignment and structure |
|---|
Probab=85.79 E-value=4.7 Score=37.70 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCeEEEeC-CCC----------cCCC-CCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCC
Q 024871 15 SFETGFSLLGGHAIYLG-PDD----------IQMG-KREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGL 82 (261)
Q Consensus 15 SFe~A~~~LGg~~~~l~-~~~----------s~~~-kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~ 82 (261)
-...=...+|..++.+. .+. +.+. .|-+++|..+.-++-+.+++-+.......+.+.+.-++|.|...
T Consensus 186 eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~~~~~ 265 (458)
T 1mio_B 186 EIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSYASDLGAKTLEKKCKVPFKTLR 265 (458)
T ss_dssp HHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHHcCCcEEEeccccccccCcccCccceeCCCCCcHHHHHhhccCCEEEEEchhhHHHHHHHHHHHhCCCEEecC
Confidence 33444668999998753 221 2344 57788888886666666655332234566777778899988753
Q ss_pred CC-CCChh----HHHHHHH-----------------HHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC
Q 024871 83 TD-YNHPC----QIMADAL-----------------TIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK 140 (261)
Q Consensus 83 ~~-~~HPt----Q~L~Dl~-----------------Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~ 140 (261)
.. +-.-| +.|+.++ .+.+....+.|+|+++.||. -.+.|++..+.-+|++++.++-.
T Consensus 266 ~p~G~~~T~~~l~~la~~~g~~~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~-~~~~~l~~~L~elG~~vv~v~~~ 344 (458)
T 1mio_B 266 TPIGVSATDEFIMALSEATGKEVPASIEEERGQLIDLMIDAQQYLQGKKVALLGDP-DEIIALSKFIIELGAIPKYVVTG 344 (458)
T ss_dssp CCBHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECH-HHHHHHHHHHHTTTCEEEEEEES
T ss_pred CCcCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc-hHHHHHHHHHHHCCCEEEEEEeC
Confidence 10 00000 1111110 01111123689999999994 56777887777899987765432
Q ss_pred CCCCCHHHHHH----HHHhC-C-CeEEEEcCHH---HHhC--CCCEEEEec
Q 024871 141 GFEPDKETVEK----ARKAG-I-SKIEITNDPK---EVVQ--GADVVYSDV 180 (261)
Q Consensus 141 ~~~~~~~~~~~----~~~~g-~-~~i~~~~d~~---~a~~--~aDviy~~~ 180 (261)
.. +++..+. +++.+ . ..+....|+. +.++ +.|+++...
T Consensus 345 ~~--~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~pDl~ig~~ 393 (458)
T 1mio_B 345 TP--GMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLISNT 393 (458)
T ss_dssp SC--CHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEEESG
T ss_pred CC--CHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCCCEEEeCc
Confidence 22 3332222 22332 1 2454444654 3344 789888875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.72 E-value=2.9 Score=37.30 Aligned_cols=73 Identities=14% Similarity=0.018 Sum_probs=46.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCC--CCCCCHHHHHHHHH---h-CCCeEEEEcCHHHHhCCCCEEEE
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPK--GFEPDKETVEKARK---A-GISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~--~~~~~~~~~~~~~~---~-g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+..||+++|- +.+..+++..++..|. ++++.... .-......++.... . ....+..+.| .+++++||+|+.
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIi 84 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVI 84 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEE
Confidence 4679999995 8899998888777787 88877543 10011111111111 1 1245666666 578999999888
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
..
T Consensus 85 aa 86 (315)
T 3tl2_A 85 TA 86 (315)
T ss_dssp CC
T ss_pred eC
Confidence 64
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.59 E-value=0.83 Score=40.87 Aligned_cols=67 Identities=22% Similarity=0.205 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHH-HHH---H---hCCCeEEEEcCHHHHhCCCCEEE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVE-KAR---K---AGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~-~~~---~---~g~~~i~~~~d~~~a~~~aDviy 177 (261)
..||+++|- ++|..+++..+..-+. ++++.-- +++.++ .+. + .. ..++++.+..+++++||+|+
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di-----~~~~~~g~~~dl~~~~~~~-~~~~v~~~~~~a~~~aDvVi 77 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDV-----VKDRTKGDALDLEDAQAFT-APKKIYSGEYSDCKDADLVV 77 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS-----SHHHHHHHHHHHHGGGGGS-CCCEEEECCGGGGTTCSEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeC-----CchHHHHHHHHHHHHHHhc-CCeEEEECCHHHhCCCCEEE
Confidence 479999997 8888888776655453 6776643 222222 111 1 11 24445556788999999999
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
...
T Consensus 78 i~a 80 (318)
T 1ez4_A 78 ITA 80 (318)
T ss_dssp ECC
T ss_pred ECC
Confidence 874
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.55 E-value=1 Score=39.40 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=46.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...|.+++++.+. ++..+.+.+.| +..+.+++++++++|+|+.-.
T Consensus 31 ~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~-----~~~~~~~~~~g---~~~~~~~~~~~~~~DvVi~av 94 (316)
T 2uyy_A 31 KKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRT-----AEKCDLFIQEG---ARLGRTPAEVVSTCDITFACV 94 (316)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS-----GGGGHHHHHTT---CEECSCHHHHHHHCSEEEECC
T ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHcC---CEEcCCHHHHHhcCCEEEEeC
Confidence 6899999 5888888888877778888776543 22233344555 245778999999999998864
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=3.6 Score=36.74 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=49.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC-----------CeEEEEcCHHHHhCCCCEEE
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI-----------SKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~-----------~~i~~~~d~~~a~~~aDviy 177 (261)
||+++|- +++..+++..+..-|.++++.... ++.++.+++.+. ..+..++|++++++++|+|+
T Consensus 17 kI~iIG~-G~mG~~la~~L~~~G~~V~~~~r~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVi 90 (366)
T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKKCREVCVWHMN-----EEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL 90 (366)
T ss_dssp EEEEECC-SHHHHHHHHHHTTTEEEEEEECSC-----HHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEE
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEE
Confidence 8999995 889999998888888888877543 344444444320 13677889999999999988
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.-.
T Consensus 91 lav 93 (366)
T 1evy_A 91 FVI 93 (366)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=1.7 Score=38.61 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH--hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK--AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~--~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..||+++|- ++|..+++..+..-|. ++++.--+.-.......+.... .....++++.+..+++++||+|+...
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICA 82 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECC
Confidence 4579999997 8888888776655453 6776643210011111111111 11123344446688999999999875
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=84.65 E-value=3 Score=39.21 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeC-------------CCCCCCC-HHHHHHHHHhCCCeEEEEcCHHHHhCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCAC-------------PKGFEPD-KETVEKARKAGISKIEITNDPKEVVQG 172 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~-------------P~~~~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~ 172 (261)
-.+|++|| .+.|.-.++..++..|.+++.+- ++-++|. +++++.+.+.| ++.++.|.++++++
T Consensus 21 m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai~~ 97 (444)
T 3vtf_A 21 MASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAVAA 97 (444)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHHHT
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHHhc
Confidence 46899999 57888777777777788887553 1223443 33444333444 68899999999999
Q ss_pred CCEEEEe
Q 024871 173 ADVVYSD 179 (261)
Q Consensus 173 aDviy~~ 179 (261)
+|+++..
T Consensus 98 ad~~~I~ 104 (444)
T 3vtf_A 98 TDATFIA 104 (444)
T ss_dssp SSEEEEC
T ss_pred CCceEEE
Confidence 9998864
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=84.61 E-value=9.3 Score=36.23 Aligned_cols=177 Identities=18% Similarity=0.188 Sum_probs=101.8
Q ss_pred EEEeCCCCcCCCCCCCHHHHHHHHhhh---ccEEEEeeCCcch----HHHHhhhCCCcEEeCCCCCCChhH--HHHHHHH
Q 024871 27 AIYLGPDDIQMGKREETRDAARVLCRY---NDIIMARVFGHQD----ILDLAKFATVPVINGLTDYNHPCQ--IMADALT 97 (261)
Q Consensus 27 ~~~l~~~~s~~~kgEs~~Dt~~~ls~~---~D~iv~R~~~~~~----~~~~a~~~~vPVINa~~~~~HPtQ--~L~Dl~T 97 (261)
++.+|.++-. .-+..++.+..+... +-.|=.-.++... ++++-+...+||+| |..|=|- +|+=|+.
T Consensus 134 PI~LD~gt~~--~~~d~defve~v~~~~P~fG~InlEDf~ap~af~il~ryr~~~~ipvFn---DD~qGTA~V~lAglln 208 (487)
T 3nv9_A 134 PICIDSKNKE--GKNDPDAVIEFVQRIQHTFGAINLEDISQPNCYKILDVLRESCDIPVWH---DDQQGTASVTLAGLLN 208 (487)
T ss_dssp EEECCCBCTT--SCBCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEE---TTTHHHHHHHHHHHHH
T ss_pred eeEEeCCCcc--ccCCHHHHHHHHHHhCCCCCeecHhhcCCchHHHHHHHHHhhccCCccc---cccchHHHHHHHHHHH
Confidence 4567665322 123455555444443 3456666555432 34454556899999 3355554 4566666
Q ss_pred HHHHhC-CCCCcEEEEEcCCC-chHHHHHHHHhcCCc---EEEEeCCCCCCC--CHHH---------HHHHHHhCCCeEE
Q 024871 98 IIEHVG-RLEGTKVVYVGDGN-NIVHSWLLMASVIPF---HFVCACPKGFEP--DKET---------VEKARKAGISKIE 161 (261)
Q Consensus 98 i~e~~g-~l~~~~i~~vGd~~-~v~~S~~~~~~~~g~---~~~~~~P~~~~~--~~~~---------~~~~~~~g~~~i~ 161 (261)
-.+..| +++..||++.|-+. .+.-.-+ +...|+ +++++--+|+-- .+++ .+.++..+ ..
T Consensus 209 Alki~gk~l~d~riV~~GAGaAGigia~l--l~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n-~~-- 283 (487)
T 3nv9_A 209 ALKLVKKDIHECRMVFIGAGSSNTTCLRL--IVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTN-PS-- 283 (487)
T ss_dssp HHHHHTCCGGGCCEEEECCSHHHHHHHHH--HHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSC-TT--
T ss_pred HHHHhCCChhhcEEEEECCCHHHHHHHHH--HHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcc-cc--
Confidence 666655 59999999999752 3332222 223565 677765555321 1222 12233332 11
Q ss_pred EEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC-CCCCCCcccccc
Q 024871 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC-LPAERGVEVTEG 231 (261)
Q Consensus 162 ~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~-lP~~rg~Ev~~~ 231 (261)
...++.|+++++||++-.+- . .+=-+|+++++...++.||+-. =|. .|++.+
T Consensus 284 ~~~~L~eav~~adVlIG~S~----~-----------~pg~ft~e~V~~Ma~~PIIFaLSNPt---pEi~pe 336 (487)
T 3nv9_A 284 KFGSIAEACVGADVLISLST----P-----------GPGVVKAEWIKSMGEKPIVFCCANPV---PEIYPY 336 (487)
T ss_dssp CCCSHHHHHTTCSEEEECCC----S-----------SCCCCCHHHHHTSCSSCEEEECCSSS---CSSCHH
T ss_pred cCCCHHHHHhcCCEEEEecc----c-----------CCCCCCHHHHHhhcCCCEEEECCCCC---ccCCHH
Confidence 24589999999999988741 1 0124788888877788888764 342 377643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=84.60 E-value=2.4 Score=37.38 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++|- +.+..+++..++.-|. ++++.....-.......+.... .+ ...+..+.|. +++++||+|+...
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~av 80 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITA 80 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence 579999996 7888888877776676 8877765431111111111111 11 2467777887 7999999999864
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=3.1 Score=39.28 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-----------------CCeEEEEcCHHHH
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-----------------ISKIEITNDPKEV 169 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------------~~~i~~~~d~~~a 169 (261)
..||+++| .+.+..+++..++..|.++++... +++.++.+++.+ .+.+..++|++++
T Consensus 8 ~~~I~VIG-~G~vG~~lA~~la~~G~~V~~~d~-----~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a 81 (478)
T 2y0c_A 8 SMNLTIIG-SGSVGLVTGACLADIGHDVFCLDV-----DQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA 81 (478)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred CceEEEEC-cCHHHHHHHHHHHhCCCEEEEEEC-----CHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence 48999999 488999998888888988887643 233333333211 1257889999999
Q ss_pred hCCCCEEEEec
Q 024871 170 VQGADVVYSDV 180 (261)
Q Consensus 170 ~~~aDviy~~~ 180 (261)
+++||+|+.-.
T Consensus 82 ~~~aDvviiaV 92 (478)
T 2y0c_A 82 VAHGDVQFIAV 92 (478)
T ss_dssp HHHCSEEEECC
T ss_pred hhcCCEEEEEe
Confidence 99999998864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=84.28 E-value=4.6 Score=37.85 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC-------------CCCC-HHHHHHHHHhCCCeEEEEcCHHHHhCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG-------------FEPD-KETVEKARKAGISKIEITNDPKEVVQG 172 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~-------------~~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~ 172 (261)
..+|+++| .+++.-.++..++..|.++++..-.. |+|. +++++..... +.++.+.|+++++++
T Consensus 8 ~~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~--g~l~~ttd~~ea~~~ 84 (446)
T 4a7p_A 8 SVRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKA--GRLSFTTDLAEGVKD 84 (446)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHT--TCEEEESCHHHHHTT
T ss_pred ceEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhccc--CCEEEECCHHHHHhc
Confidence 37899999 57888888888888898888765321 1221 1111111112 358889999999999
Q ss_pred CCEEEEe
Q 024871 173 ADVVYSD 179 (261)
Q Consensus 173 aDviy~~ 179 (261)
||+|+.-
T Consensus 85 aDvvii~ 91 (446)
T 4a7p_A 85 ADAVFIA 91 (446)
T ss_dssp CSEEEEC
T ss_pred CCEEEEE
Confidence 9999885
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=4.2 Score=36.25 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=44.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhc---CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE----cCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASV---IPFHFVCACPKGFEPDKETVEKARKAGISKIEIT----NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~---~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~----~d~~~a~~~aDviy~~~ 180 (261)
.||+++|-.++|..+++.++.. +.-+++++-.+. ......++. +... ....++ ++..+++++||+|+...
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl-~~~~-~~~~v~~~~~~~~~~~~~~aDivii~a 77 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDL-SHIP-TAVKIKGFSGEDATPALEGADVVLISA 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHH-HTSC-SSEEEEEECSSCCHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHh-hCCC-CCceEEEecCCCcHHHhCCCCEEEEeC
Confidence 4899999778898888776643 456788776544 222333332 2222 223333 36688999999988763
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=84.20 E-value=4.1 Score=36.22 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=68.9
Q ss_pred HhCCCCCcEEEEEcCCCchHHHHHHHHhc-CCc-EEEEeCCCCCCCCHHHHHHHH-HhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 101 HVGRLEGTKVVYVGDGNNIVHSWLLMASV-IPF-HFVCACPKGFEPDKETVEKAR-KAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 101 ~~g~l~~~~i~~vGd~~~v~~S~~~~~~~-~g~-~~~~~~P~~~~~~~~~~~~~~-~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
++..-+.++++++|- +..+.+.+..+.. .+. ++.+.... -.+.+.+..+ +.| ..++.. |+++++++||+|+
T Consensus 115 ~La~~~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g-~~~~~~-~~~eav~~aDIVi 188 (313)
T 3hdj_A 115 ALARPRSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCG-VPARMA-APADIAAQADIVV 188 (313)
T ss_dssp HHSCTTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHT-SCEEEC-CHHHHHHHCSEEE
T ss_pred hhccCCCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcC-CeEEEe-CHHHHHhhCCEEE
Confidence 444456799999995 6677776665543 454 67777766 3344444333 346 356667 9999999999999
Q ss_pred EecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCC-CcccccccccC
Q 024871 178 SDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAER-GVEVTEGVIEA 235 (261)
Q Consensus 178 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~r-g~Ev~~~v~~~ 235 (261)
+-+-. .+ ++ +..+ ..+++..+.-.+.... -.|++++++..
T Consensus 189 ~aT~s--~~------------pv-l~~~---~l~~G~~V~~vGs~~p~~~El~~~~~~~ 229 (313)
T 3hdj_A 189 TATRS--TT------------PL-FAGQ---ALRAGAFVGAIGSSLPHTRELDDEALRR 229 (313)
T ss_dssp ECCCC--SS------------CS-SCGG---GCCTTCEEEECCCSSTTCCCCCHHHHHH
T ss_pred EccCC--CC------------cc-cCHH---HcCCCcEEEECCCCCCchhhcCHHHHhc
Confidence 87521 10 11 3333 3467778776654322 25888887753
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.74 E-value=2.9 Score=37.37 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHH---HHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEK---ARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~---~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
...||+++|- +.+..+++..++.-|. ++++...+.-.......+. ....+ ..++..+.|. +++++||+|+...
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~av 90 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITA 90 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcC
Confidence 3469999996 7888888887777776 8777655432121111111 11111 2468888898 8999999999864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=83.36 E-value=4 Score=35.88 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchH-------HHHhhh--CCCcEE
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDI-------LDLAKF--ATVPVI 79 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~-------~~~a~~--~~vPVI 79 (261)
.+...=+..++..+|....+..-. + ..|.+.+.++-+... ++.+-+=.+-...+ ...|+. +-=+|+
T Consensus 36 S~Sp~~hn~~~~~~Gl~~~Y~~~~---~-~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGavNti~ 111 (297)
T 2egg_A 36 SLSPLMHNDAFARLGIPARYHLFS---V-EPGQVGAAIAGVRALGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII 111 (297)
T ss_dssp CSHHHHHHHHHHHTTCCEEEEEEE---C-CTTCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECHHHHHHTCCCEEE
T ss_pred ccCHHHHHHHHHHcCcCcEEEEEE---c-CHHHHHHHHHHHhhCCCCeEEECCcCHHHHHHHHHHHhHHHHHhCCCCeEE
Confidence 345555678999999987765332 1 247889988877654 45555554432221 222222 112455
Q ss_pred e-CCCCCCChhHHHHHHHHHHHHhC--CCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHh
Q 024871 80 N-GLTDYNHPCQIMADALTIIEHVG--RLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKA 155 (261)
Q Consensus 80 N-a~~~~~HPtQ~L~Dl~Ti~e~~g--~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~ 155 (261)
| .+.-..+=|-...=+..+ +.++ .++|++++++|- +.+....+..+...|. +++++.... +...+.+++.
T Consensus 112 ~~~g~l~g~nTd~~G~~~~l-~~~~~~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~----~ka~~la~~~ 185 (297)
T 2egg_A 112 NNDGRLVGYNTDGLGYVQAL-EEEMNITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTV----EKAERLVREG 185 (297)
T ss_dssp EETTEEEEECCHHHHHHHHH-HHHTTCCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSH----HHHHHHHHHS
T ss_pred CcCCeEeeccCCHHHHHHHH-HHhCCCCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHHh
Confidence 4 221111222221112222 3444 689999999996 6789998888888997 888875421 1222233343
Q ss_pred CCC--eEEEEcCHHHHhCCCCEEEEec
Q 024871 156 GIS--KIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 156 g~~--~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+.. .+.-.+++.++++++|+|+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~aDivIn~t 212 (297)
T 2egg_A 186 DERRSAYFSLAEAETRLAEYDIIINTT 212 (297)
T ss_dssp CSSSCCEECHHHHHHTGGGCSEEEECS
T ss_pred hhccCceeeHHHHHhhhccCCEEEECC
Confidence 321 2211235677889999999975
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=83.24 E-value=2.9 Score=37.39 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=90.4
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeC-CcchH------HHHhhhCC-C-cEE
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVF-GHQDI------LDLAKFAT-V-PVI 79 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~-~~~~~------~~~a~~~~-v-PVI 79 (261)
++...=+..++.++|....|..-. + ..|.+.+..+.+... ...+-+=.+ +...+ .+.|+..+ | .|+
T Consensus 50 S~SP~ihn~~f~~~Gl~~~Y~~~~---v-~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~ls~~A~~iGAVNTi~ 125 (315)
T 3tnl_A 50 SLSPTMHNEAFAKLGLDYVYLAFE---V-GDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV 125 (315)
T ss_dssp CSHHHHHHHHHHHHTCCEEEEEEE---C-CHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEECHHHHHHTCCSEEE
T ss_pred cccHHHHHHHHHHcCCCcEEEEEe---c-CHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhcCHHHHHhCccceEE
Confidence 344555677888999887775321 1 135677777777654 445544443 22222 22333211 1 345
Q ss_pred eCCC-CCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCC--CCCCHHHHHHHHHh
Q 024871 80 NGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKG--FEPDKETVEKARKA 155 (261)
Q Consensus 80 Na~~-~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~--~~~~~~~~~~~~~~ 155 (261)
|-++ -..|=|-...=+..+.+...+++|++++++|- +.+..+.+..+...|. +++++.-.. ..-.+++.+...+.
T Consensus 126 ~~~g~l~G~NTD~~Gf~~~L~~~~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~ 204 (315)
T 3tnl_A 126 NDDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK 204 (315)
T ss_dssp EETTEEEEECCHHHHHHHHHHHTTCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCHHHHHHHHHHcCCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh
Confidence 5222 11222333222333344333689999999996 6888998888888998 888775431 11111222222222
Q ss_pred CCCeEEEE--c---CHHHHhCCCCEEEEec
Q 024871 156 GISKIEIT--N---DPKEVVQGADVVYSDV 180 (261)
Q Consensus 156 g~~~i~~~--~---d~~~a~~~aDviy~~~ 180 (261)
....+... + ++.++++++|+|+..+
T Consensus 205 ~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 205 TDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred cCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 11233332 2 2557788999999875
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=82.97 E-value=4.2 Score=35.46 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=47.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC--------CeEEEEc--CHHHHhCCCCEEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI--------SKIEITN--DPKEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~--------~~i~~~~--d~~~a~~~aDviy 177 (261)
.||+++|- +++..+++..+..-|.++++...+ .+++..+.+++.|. ..+..++ +++++++++|+|+
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi 76 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTE---FDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCG---GGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEEcc---CCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEE
Confidence 37999995 788888887777778888877541 02344455555442 1246676 8888999999998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
...
T Consensus 77 ~~v 79 (335)
T 1txg_A 77 LGV 79 (335)
T ss_dssp ECS
T ss_pred EcC
Confidence 864
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=3.3 Score=36.65 Aligned_cols=73 Identities=15% Similarity=0.020 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCC-------cEEEEeCCCCCCCCHHHHHHHHHhC-----------CCeEEEEcCHHH
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIP-------FHFVCACPKGFEPDKETVEKARKAG-----------ISKIEITNDPKE 168 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g-------~~~~~~~P~~~~~~~~~~~~~~~~g-----------~~~i~~~~d~~~ 168 (261)
..||+++|- +++..+++..+..-| .++++.....-.......+.+++.+ ...+..++|+++
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 468999994 788888877776666 7787776543211001223333321 023677889999
Q ss_pred HhCCCCEEEEec
Q 024871 169 VVQGADVVYSDV 180 (261)
Q Consensus 169 a~~~aDviy~~~ 180 (261)
+++++|+|+.-.
T Consensus 87 ~~~~aD~Vilav 98 (354)
T 1x0v_A 87 AAEDADILIFVV 98 (354)
T ss_dssp HHTTCSEEEECC
T ss_pred HHcCCCEEEEeC
Confidence 999999998864
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=4.7 Score=36.94 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=47.1
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC---------------CeEEEEcCHHHHhCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---------------SKIEITNDPKEVVQG 172 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~---------------~~i~~~~d~~~a~~~ 172 (261)
.||+++|- +++...++..++. |.+++++.. +++.++.+++.+. ..+..+.|+++++++
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~~V~~~d~-----~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~ 73 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QNEVTIVDI-----LPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE 73 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEEEECS-----CHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CCEEEEEEC-----CHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC
Confidence 37999995 8899999888888 988877643 2333333333221 246778899899999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
+|+|+...
T Consensus 74 aDvviiav 81 (402)
T 1dlj_A 74 AELVIIAT 81 (402)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 99998864
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=82.41 E-value=1.5 Score=39.72 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=49.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCC----CCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQG----ADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~----aDviy~~~ 180 (261)
.||++|| .+++..|++..+...|.+++... .+++..+.+++.|. ..+.|+++++++ +|+|+.-.
T Consensus 9 ~kIgIIG-~G~mG~slA~~L~~~G~~V~~~d-----r~~~~~~~a~~~G~---~~~~~~~e~~~~a~~~aDlVilav 76 (341)
T 3ktd_A 9 RPVCILG-LGLIGGSLLRDLHAANHSVFGYN-----RSRSGAKSAVDEGF---DVSADLEATLQRAAAEDALIVLAV 76 (341)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTTCCEEEEC-----SCHHHHHHHHHTTC---CEESCHHHHHHHHHHTTCEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEe-----CCHHHHHHHHHcCC---eeeCCHHHHHHhcccCCCEEEEeC
Confidence 6899999 68999999999988898877654 34566677777774 346788887764 79988864
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=82.35 E-value=8.7 Score=36.27 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=41.3
Q ss_pred CcEEEEEcCCCchHHHHHHHH--h--cC-CcEEEEeCCCCCCCCHHHHH----HHH----HhC-CCeEEEEcCHHHHhCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMA--S--VI-PFHFVCACPKGFEPDKETVE----KAR----KAG-ISKIEITNDPKEVVQG 172 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~--~--~~-g~~~~~~~P~~~~~~~~~~~----~~~----~~g-~~~i~~~~d~~~a~~~ 172 (261)
..||+++|.++-....++..+ . .+ +-++++..-. ++.++ ..+ ..+ ..++..+.|+++++++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~-----~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~ 102 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND-----KERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD 102 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC-----HHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCC-----HHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC
Confidence 569999998652133233222 2 34 4567776532 22221 111 222 2468888899999999
Q ss_pred CCEEEEec
Q 024871 173 ADVVYSDV 180 (261)
Q Consensus 173 aDviy~~~ 180 (261)
||+|+...
T Consensus 103 AD~VViaa 110 (472)
T 1u8x_X 103 VDFVMAHI 110 (472)
T ss_dssp CSEEEECC
T ss_pred CCEEEEcC
Confidence 99999874
|
| >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 | Back alignment and structure |
|---|
Probab=82.33 E-value=5.8 Score=33.51 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=55.1
Q ss_pred cEEEEE--cCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEc------CHHHHh--CCCCE
Q 024871 108 TKVVYV--GDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETVEKARKAGISKIEITN------DPKEVV--QGADV 175 (261)
Q Consensus 108 ~~i~~v--Gd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~------d~~~a~--~~aDv 175 (261)
+||+++ |.+. -+..++..+.. ++.+++.+-.+ .++...++.|+++|+..+.+.. .+.+.+ .+.|+
T Consensus 9 ~ri~vl~SG~gs-nl~all~~~~~~~~~~~I~~Vis~--~~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dl 85 (215)
T 3kcq_A 9 LRVGVLISGRGS-NLEALAKAFSTEESSVVISCVISN--NAEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDL 85 (215)
T ss_dssp EEEEEEESSCCH-HHHHHHHHTCCC-CSEEEEEEEES--CTTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCcH-HHHHHHHHHHcCCCCcEEEEEEeC--CcchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCE
Confidence 466554 3333 34455555432 34554432211 1112235678888865443221 122233 35788
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
|..-.|. ..+.+++++..+..++=+|| ||.+||
T Consensus 86 ivlagy~-----------------~IL~~~~l~~~~~~~iNiHpSLLP~yrG 120 (215)
T 3kcq_A 86 VCLAGFM-----------------SILPEKFVTDWHHKIINIHPSLLPSFKG 120 (215)
T ss_dssp EEESSCC-----------------SCCCHHHHHHTTTSEEEEESSCTTTTCS
T ss_pred EEEeCCc-----------------eEeCHHHHhhccCCeEEECcccccCCCC
Confidence 8887542 34788888888778999999 899885
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=82.31 E-value=1.7 Score=38.79 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-------EEEEeCCC----CCCCCHHHHHHHHH-hC-CCeEEEEcCHHHHhCCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-------HFVCACPK----GFEPDKETVEKARK-AG-ISKIEITNDPKEVVQGA 173 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-------~~~~~~P~----~~~~~~~~~~~~~~-~g-~~~i~~~~d~~~a~~~a 173 (261)
..||+++|-.+.|..+++..+..-|. ++++.-.+ .-.......+.... .. ...+..+.|..+++++|
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 47999999878898888877655553 67665321 00000111111111 01 13567778999999999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|+|+...
T Consensus 85 D~Vi~~a 91 (329)
T 1b8p_A 85 DVALLVG 91 (329)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=81.91 E-value=2.3 Score=38.01 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=42.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- +++..+++..+..-|. ++++.-.+.-......++.... .+ ..++.-+ +..+++++||+|+...
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~-~~~~a~~~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT-NDYGPTEDSDVCIITA 77 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE-SSSGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC-CCHHHhCCCCEEEECC
Confidence 48999994 8888888877665554 7777754331122222222111 11 1234334 5578999999988864
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=81.72 E-value=2.5 Score=35.63 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=44.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++..+++..+...| .+++++.+ +++..+.+.+ .| +..+.|+++++ ++|+|+.-.
T Consensus 1 m~i~iiG-~G~mG~~~a~~l~~~g~~~v~~~~r-----~~~~~~~~~~~~g---~~~~~~~~~~~-~~D~vi~~v 65 (263)
T 1yqg_A 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANR-----GAEKRERLEKELG---VETSATLPELH-SDDVLILAV 65 (263)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECS-----SHHHHHHHHHHTC---CEEESSCCCCC-TTSEEEECS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCeEEEECC-----CHHHHHHHHHhcC---CEEeCCHHHHh-cCCEEEEEe
Confidence 3799999 4888888887777778 78776654 3344444444 35 34577888888 999999864
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=81.42 E-value=3.8 Score=36.28 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHH---hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARK---AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~---~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+++|- ++|..+++..+..-+. ++++.-.+.-.......+.... .+ ..++..+.|. +++++||+|+...
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~a 75 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTA 75 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeC
Confidence 6899996 7888887766554454 5776654321121112222221 12 2357766786 7999999998864
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=81.35 E-value=6.7 Score=35.29 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=61.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEE-E---EcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE-I---TNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~-~---~~d~~~a~~~aDviy~~~ 180 (261)
+++.+|+++|- +.+.+..+..+..+|.+++.+... ++-.+.+++.+...+. . .+++.+.++++|+|+...
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~-----~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~ 238 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDIN-----VERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAV 238 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECC
Confidence 67789999997 889999999999999988776542 3344455544322221 1 124567788999998865
Q ss_pred ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEee
Q 024871 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218 (261)
Q Consensus 181 w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH 218 (261)
-.... ..+..++++.++..+++..+.-
T Consensus 239 ~~~~~-----------~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 239 LVPGR-----------RAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CCTTS-----------SCCCCBCHHHHTTSCTTCEEEE
T ss_pred CcCCC-----------CCCeecCHHHHhhCCCCCEEEE
Confidence 11110 1234456677776666655544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=81.30 E-value=5 Score=28.79 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE-----cCHHHHhCCCCEEEEe
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEIT-----NDPKEVVQGADVVYSD 179 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~-----~d~~~a~~~aDviy~~ 179 (261)
.+++|+++|- +.+...++..+...| .+++.+... ++-.+.+...+. .+... ++++++++++|+|+..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~-----~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~d~vi~~ 76 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHD-----LAALAVLNRMGV-ATKQVDAKDEAGLAKALGGFDAVISA 76 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESC-----HHHHHHHHTTTC-EEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCC-----HHHHHHHHhCCC-cEEEecCCCHHHHHHHHcCCCEEEEC
Confidence 4689999998 999999998888888 788776542 333333443342 22211 2345678899998876
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 77 ~ 77 (118)
T 3ic5_A 77 A 77 (118)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=5.1 Score=35.89 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHH-----------HHHhCC-----------CeEEEEcC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEK-----------ARKAGI-----------SKIEITND 165 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~-----------~~~~g~-----------~~i~~~~d 165 (261)
.||++||- +-+.++|+..++.-|.+|++.-|. ++.++. ..+.|. +.+..+.|
T Consensus 7 ~~VaViGa-G~MG~giA~~~a~~G~~V~l~D~~-----~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 7 GDVLIVGS-GLVGRSWAMLFASGGFRVKLYDIE-----PRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEECSC-----HHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCeEEEEECC-----HHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 58999996 778999999988889998887653 222221 112220 24778899
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
+++++++||+|+=-.
T Consensus 81 l~~a~~~ad~ViEav 95 (319)
T 3ado_A 81 LAEAVEGVVHIQECV 95 (319)
T ss_dssp HHHHTTTEEEEEECC
T ss_pred hHhHhccCcEEeecc
Confidence 999999999988654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=81.28 E-value=2.4 Score=36.43 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=44.6
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++...++..+...|.++++.. .. .-. +.+.+.| +..+.+++++++++|+|+.-.
T Consensus 4 m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~-~~-~~~----~~~~~~g---~~~~~~~~~~~~~~D~vi~~v 66 (295)
T 1yb4_A 4 MKLGFIG-LGIMGSPMAINLARAGHQLHVTT-IG-PVA----DELLSLG---AVNVETARQVTEFADIIFIMV 66 (295)
T ss_dssp CEEEECC-CSTTHHHHHHHHHHTTCEEEECC-SS-CCC----HHHHTTT---CBCCSSHHHHHHTCSEEEECC
T ss_pred CEEEEEc-cCHHHHHHHHHHHhCCCEEEEEc-CH-HHH----HHHHHcC---CcccCCHHHHHhcCCEEEEEC
Confidence 5899999 58888888887777788887664 22 111 2233344 244678999999999999864
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=81.26 E-value=11 Score=35.24 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHh----cC-CcEEEEeCCCC--CCCCHHHHHHHH----HhC-CCeEEEEcCHHHHhCCCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMAS----VI-PFHFVCACPKG--FEPDKETVEKAR----KAG-ISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~----~~-g~~~~~~~P~~--~~~~~~~~~~~~----~~g-~~~i~~~~d~~~a~~~aD 174 (261)
..||+++|.++-....++..+. .+ +-++++..-.. -.. +...+.++ ..+ ..++..+.|.++++++||
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~-~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD 85 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKL-EIVGALAKRMVEKAGVPIEIHLTLDRRRALDGAD 85 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHH-HHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHH-HHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence 4799999986533555543333 24 44677765422 110 01111111 222 246777889999999999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+...
T Consensus 86 ~VVita 91 (450)
T 1s6y_A 86 FVTTQF 91 (450)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999875
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=2.5 Score=37.31 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=48.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCC----cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIP----FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g----~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.+..||+++|- +++..+++..+..-| .++++..+.. ..+..+.+++.| +..+.+..++++++|+|+.-.
T Consensus 20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~---~~~~~~~l~~~G---~~~~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDM---DLATVSALRKMG---VKLTPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCT---TSHHHHHHHHHT---CEEESCHHHHHHHCSEEEECS
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCc---cHHHHHHHHHcC---CEEeCChHHHhccCCEEEEEe
Confidence 34568999994 889999988877777 5777665432 101334455666 345778899999999999864
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=80.94 E-value=4.3 Score=35.85 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=45.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHH---HhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKAR---KAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~---~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- ++|..+++..++..|. ++++.-.+.-.......+..+ ..+ ..++..+.|. +++++||+|+...
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~ 78 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTS 78 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcC
Confidence 58999997 8888888887777775 766664332111111111111 111 2457777887 8899999999874
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=2.7 Score=37.34 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=43.8
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEEE---cCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAG-ISKIEIT---NDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~~---~d~~~a~~~aDviy~~~ 180 (261)
.||+++|-.++|..+++..+..-| -++++.--+. ......+ +.+.. ...++.+ +|+++++++||+|+...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~d-L~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~a 76 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAAD-LSHIETRATVKGYLGPEQLPDCLKGCDVVVIPA 76 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHH-HTTSSSSCEEEEEESGGGHHHHHTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHH-HhccCcCceEEEecCCCCHHHHhCCCCEEEECC
Confidence 489999976888888877766656 4676664332 1111111 11111 1245553 57899999999999864
|
| >3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=80.35 E-value=5 Score=37.91 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=83.1
Q ss_pred HHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEeCC--C--CCCChhHHHHHH
Q 024871 20 FSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGL--T--DYNHPCQIMADA 95 (261)
Q Consensus 20 ~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVINa~--~--~~~HPtQ~L~Dl 95 (261)
...+|..++.. +..|-+++|..+.-.+-+.+++.+.......+.+.+.-++|.|.+. | ...-=.+.|+.+
T Consensus 225 L~~~Gi~v~~~------~~gg~~~~el~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~Gi~~T~~~L~~ia~~ 298 (483)
T 3pdi_A 225 LDELGLRVLCT------LAGDARYREVQTMHRAEVNMMVCSKAMLNVARKLQETYGTPWFEGSFYGITDTSQALRDFARL 298 (483)
T ss_dssp HHHHTEEEEEE------ETSSBCHHHHTTGGGCSEEEEESCCTTHHHHHHHHHHHCCCEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHCCCcEEEE------CCCcCCHHHHHhhhcCCEEEEEchhhHHHHHHHHHHHhCCCEeecCCCCHHHHHHHHHHHHHH
Confidence 45677776532 1245677887776555556655554445566677677788988742 1 000111222222
Q ss_pred HH-----------H-----------HHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH
Q 024871 96 LT-----------I-----------IEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 96 ~T-----------i-----------~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
+- | ......|.|+|+++.||... +.+++..+.-+|++++.++-.. ..++..+..+
T Consensus 299 ~g~~~i~~~~e~~i~~er~~~~~al~~~~~~l~GKrv~i~~~~~~-~~~l~~~L~ElGmevv~~gt~~--~~~~d~~~~~ 375 (483)
T 3pdi_A 299 LDDPDLTARTEALIAREEAKVRAALEPWRARLEGKRVLLYTGGVK-SWSVVSALQDLGMKVVATGTKK--STEEDKARIR 375 (483)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSSC-HHHHHHHHHHHTCEEEEECBSS--SCHHHHHHHH
T ss_pred hCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCch-HHHHHHHHHHCCCEEEEEecCC--CCHHHHHHHH
Confidence 20 1 00112378999999999654 4577777777899988775322 2333333333
Q ss_pred H-hCCCeEEEEc-CHH---HHh--CCCCEEEEec
Q 024871 154 K-AGISKIEITN-DPK---EVV--QGADVVYSDV 180 (261)
Q Consensus 154 ~-~g~~~i~~~~-d~~---~a~--~~aDviy~~~ 180 (261)
+ .+...+.+.+ |+. +.+ .+.|+++...
T Consensus 376 ~~l~~~~~i~~d~d~~el~~~i~~~~pDL~ig~~ 409 (483)
T 3pdi_A 376 ELMGDDVKMLDEGNARVLLKTVDEYQADILIAGG 409 (483)
T ss_dssp HHSCSSCCBCCSCSHHHHHHHHHHTTCSEEECCG
T ss_pred HhcCCCCEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 3 2321122222 343 334 4689998864
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.28 E-value=7.2 Score=36.83 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH-----------hCC----------CeEEEEcC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK-----------AGI----------SKIEITND 165 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~-----------~g~----------~~i~~~~d 165 (261)
-+||++||- +++..+++..++.-|.++++.. .+++.++.+.+ .|. ..+..+.|
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~l~D-----~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGHQVLLYD-----ISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTD 78 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEC-----SCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCeEEEEE-----CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCC
Confidence 368999995 8899999888888898887654 34444444332 221 14677888
Q ss_pred HHHHhCCCCEEEEec
Q 024871 166 PKEVVQGADVVYSDV 180 (261)
Q Consensus 166 ~~~a~~~aDviy~~~ 180 (261)
++ ++++||+|+.-.
T Consensus 79 ~~-~~~~aDlVIeAV 92 (483)
T 3mog_A 79 IH-ALAAADLVIEAA 92 (483)
T ss_dssp GG-GGGGCSEEEECC
T ss_pred HH-HhcCCCEEEEcC
Confidence 85 799999999865
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=80.21 E-value=5.1 Score=35.67 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHH---HHHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVE---KARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~---~~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
..||+++|- +.+..+++..++.-|. ++++.-.+.-.......+ .+...+ ..++..+.|. +++++||+|+...
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA 80 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence 369999996 8888888887777676 776665432111111111 111112 2467777888 8999999999874
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.10 E-value=12 Score=35.33 Aligned_cols=71 Identities=10% Similarity=0.144 Sum_probs=47.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCC---HHHHHHHHHhCC----------CeEEEEcCHHHHhCCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPD---KETVEKARKAGI----------SKIEITNDPKEVVQGAD 174 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~---~~~~~~~~~~g~----------~~i~~~~d~~~a~~~aD 174 (261)
.||++||- +.+..+++..++.-|.+|++.....-.-. ...++.+.+.|. ..+..+.|++ ++++||
T Consensus 55 ~kVaVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aD 132 (460)
T 3k6j_A 55 NSVAIIGG-GTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCD 132 (460)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCC
Confidence 68999995 77888998888888999887754321000 001222223331 2477888985 899999
Q ss_pred EEEEec
Q 024871 175 VVYSDV 180 (261)
Q Consensus 175 viy~~~ 180 (261)
+|+.-.
T Consensus 133 lVIeAV 138 (460)
T 3k6j_A 133 LIVESV 138 (460)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 261 | ||||
| d1tuga1 | 310 | c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltr | 2e-51 | |
| d1pvva2 | 163 | c.78.1.1 (A:151-313) Ornithine transcarbamoylase { | 2e-47 | |
| d1otha2 | 170 | c.78.1.1 (A:185-354) Ornithine transcarbamoylase { | 2e-39 | |
| d1dxha2 | 185 | c.78.1.1 (A:151-335) Ornithine transcarbamoylase { | 4e-36 | |
| d1pg5a2 | 153 | c.78.1.1 (A:147-299) Aspartate carbamoyltransferas | 4e-33 | |
| d1pvva1 | 150 | c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Ar | 1e-32 | |
| d1vlva2 | 161 | c.78.1.1 (A:153-313) Ornithine transcarbamoylase { | 2e-32 | |
| d1ml4a2 | 157 | c.78.1.1 (A:152-308) Aspartate carbamoyltransferas | 3e-32 | |
| d1duvg2 | 183 | c.78.1.1 (G:151-333) Ornithine transcarbamoylase { | 1e-31 | |
| d1ekxa2 | 160 | c.78.1.1 (A:151-310) Aspartate carbamoyltransferas | 6e-29 | |
| d1js1x1 | 163 | c.78.1.1 (X:1-163) Transcarbamylase-like protein { | 8e-29 | |
| d1js1x2 | 161 | c.78.1.1 (X:164-324) Transcarbamylase-like protein | 2e-28 | |
| d1otha1 | 151 | c.78.1.1 (A:34-184) Ornithine transcarbamoylase {H | 1e-27 | |
| d1dxha1 | 150 | c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Ps | 7e-25 | |
| d1duvg1 | 150 | c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Es | 1e-23 | |
| d1vlva1 | 152 | c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Th | 3e-22 | |
| d1pg5a1 | 146 | c.78.1.1 (A:1-146) Aspartate carbamoyltransferase | 8e-22 | |
| d1ekxa1 | 150 | c.78.1.1 (A:1-150) Aspartate carbamoyltransferase | 1e-17 | |
| d1ml4a1 | 150 | c.78.1.1 (A:2-151) Aspartate carbamoyltransferase | 3e-17 |
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Score = 168 bits (426), Expect = 2e-51
Identities = 64/267 (23%), Positives = 97/267 (36%), Gaps = 12/267 (4%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQM--GKREETRDAARVLCRYNDIIM 58
++ F S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFAASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQDILDLAKFAT-VPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG 116
R +F+ VPV+N N HP Q + D TI E GRL+ V VGD
Sbjct: 104 MRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDL 163
Query: 117 NNIVHSW---LLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGA 173
+A F P + ++ + GI + + +EV+
Sbjct: 164 KYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGI-AWSLHSSIEEVMAEV 222
Query: 174 DVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233
D++Y F + + A +H LP R E+ V
Sbjct: 223 DILYMTRVQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVD 278
Query: 234 EAPYSIVFPQAENRMHAQNAIMLHALG 260
+ P++ F QA N + A+ A++ L
Sbjct: 279 KTPHAWYFQQAGNGIFARQALLALVLN 305
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 153 bits (387), Expect = 2e-47
Identities = 75/159 (47%), Positives = 111/159 (69%), Gaps = 3/159 (1%)
Query: 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIE 161
++G KVVYVGDGNN+ HS ++ + + V A P+G+EPD++ ++ A + E
Sbjct: 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE 61
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+ +DP + V+ ADV+Y+DVWASMGQ+ EA R++ F+ FQV++ L+K A P FMHCLP
Sbjct: 62 LLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLP 121
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
A RG EVT+ VI++P S+V+ QAENR+HAQ A++ +G
Sbjct: 122 AHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMG 160
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Score = 132 bits (334), Expect = 2e-39
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI---SKIE 161
L+G + ++GDGNNI+HS ++ A+ H A PKG+EPD + A + +K+
Sbjct: 2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL 61
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+TNDP E G +V+ +D W SMG++EE R QAFQG+QV K+A F+HCLP
Sbjct: 62 LTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP 121
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
+ EV + V +P S+VFP+AENR A+M+ L
Sbjct: 122 -RKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLT 159
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 124 bits (313), Expect = 4e-36
Identities = 64/181 (35%), Positives = 86/181 (47%), Gaps = 25/181 (13%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KI 160
L Y+GD NN+ +S LL+ + + A PK P E V + +K K+
Sbjct: 3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL 62
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
+T DPKE V+G D V++DVW SMG+ K+ E + P+A FMH
Sbjct: 63 TLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMH 122
Query: 219 CLPAER-------------------GVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
CLPA G+EVTE V E+PY+I F QAENRMH AI++ L
Sbjct: 123 CLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTL 182
Query: 260 G 260
Sbjct: 183 A 183
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 116 bits (291), Expect = 4e-33
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 8/158 (5%)
Query: 105 LEGTKVVYVGDGNN--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI 162
++G +GD V+S L + + V ++ + ++
Sbjct: 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNY---PVKE 57
Query: 163 TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPA 222
+P EV+ DV+Y + + ++ + V L + +H LP
Sbjct: 58 VENPFEVINEVDVLYVTRI-QKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP- 115
Query: 223 ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + + F QA + + +I+ G
Sbjct: 116 -RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYG 152
|
| >d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 114 bits (286), Expect = 1e-32
Identities = 62/103 (60%), Positives = 78/103 (75%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF KPS RTRVSFE + LGGHA+YL D+Q+ + E D ARVL RY D IMAR
Sbjct: 48 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMAR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG 103
V+ H+D+ DLAK+ATVPVINGL+D++HPCQ +AD +TI E G
Sbjct: 108 VYDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWEKKG 150
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Score = 114 bits (285), Expect = 2e-32
Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGIS---KI 160
L+G KVV++GD NN+ S ++ + + +FV P+ +P + ++ ++ +
Sbjct: 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSV 60
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKL-AGPKAYFMHC 219
T++ +E + GADVVY+DVWASMG++++ R + +QV+E +M++ + FMHC
Sbjct: 61 SFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC 120
Query: 220 LPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259
LPA +G EVT VIE S V+ +AENR H A+M+ L
Sbjct: 121 LPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 160
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 114 bits (285), Expect = 3e-32
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 104 RLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161
R++G K+ +GD VHS + P+ + VE+ R+ G+ K+
Sbjct: 1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGM-KVV 59
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
T ++V+ DV+Y +E Y K +QV+ +++ A + MH LP
Sbjct: 60 ETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGS-YQVNLKVLEKAKDELRIMHPLP 118
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261
R E+ V ++I F Q N + + A++ LG+
Sbjct: 119 --RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV 156
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 1e-31
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR---KAGISKI 160
+VY GD NN+ +S L A++ P+ P+ V + R + I
Sbjct: 3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNI 62
Query: 161 EITNDPKEVVQGADVVYSDVWASMGQKE--EAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218
+T D + V+GAD +Y+DVW SMG+ + A + + + P+ F+H
Sbjct: 63 TLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLH 122
Query: 219 CLPA------------------ERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
CLPA G+EVT+ V E+ SIVF QAENRMH A+M+ L
Sbjct: 123 CLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLS 182
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 6e-29
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 6/159 (3%)
Query: 104 RLEGTKVVYVGDGNN--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIE 161
RL+ V VGD VHS + + + +
Sbjct: 1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWS 60
Query: 162 ITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221
+ + +EV+ D++Y F + + A +H LP
Sbjct: 61 LHSSIEEVMAEVDILYMTRVQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP 118
Query: 222 AERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260
R E+ V + P++ F QA N + A+ A++ L
Sbjct: 119 --RVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLN 155
|
| >d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Score = 105 bits (262), Expect = 8e-29
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 22/123 (17%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDD------------IQMGKREETRDAAR 48
+ MIF S+RTR+S + LG + I L + + K E +A
Sbjct: 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIP 98
Query: 49 VLCRYNDIIMARVFGHQD----------ILDLAKFATVPVINGLTDYNHPCQIMADALTI 98
V+ Y DII R F + I + + PV + HP Q AD +TI
Sbjct: 99 VMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITI 158
Query: 99 IEH 101
E+
Sbjct: 159 EEY 161
|
| >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Score = 104 bits (259), Expect = 2e-28
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 117 NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176
+ +S+ + + FV P+G+E D + V + D + +GAD +
Sbjct: 19 QAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGN--------ARVEYDQMKAFEGADFI 70
Query: 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAP 236
Y+ WA+ D + AYFMHCLP R + VT+ VIE+P
Sbjct: 71 YAKNWAAYTGDNYGQILSTDRNWTVGDRQMAV--TNNAYFMHCLPVRRNMIVTDDVIESP 128
Query: 237 YSIVFPQAENRMHAQNAIMLHALG 260
SIV P+A NR + ++ L
Sbjct: 129 QSIVIPEAANREISATVVLKRLLE 152
|
| >d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (253), Expect = 1e-27
Identities = 53/101 (52%), Positives = 68/101 (67%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+ MIF K S RTR+S ETGF+LLGGH +L DI +G E D ARVL D ++AR
Sbjct: 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLAR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
V+ D+ LAK A++P+INGL+D HP QI+AD LT+ EH
Sbjct: 109 VYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEH 149
|
| >d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 94.5 bits (234), Expect = 7e-25
Identities = 47/101 (46%), Positives = 63/101 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR +FE G + Y+ P+ Q+G +E +D ARVL R D I R
Sbjct: 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYR 107
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEH 101
F + + +LAKFA VPV NGLTD HP Q++AD LT+ EH
Sbjct: 108 GFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREH 148
|
| >d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Score = 91.4 bits (226), Expect = 1e-23
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
+++IF K S RTR SFE G YLGP Q+G +E +D ARVL R D I R
Sbjct: 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYR 106
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG 103
+G + + LA++A+VPV NGLT+ HP Q++AD LT+ EH+
Sbjct: 107 GYGQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLTMQEHLP 149
|
| >d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Score = 87.9 bits (217), Expect = 3e-22
Identities = 52/104 (50%), Positives = 70/104 (67%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMAR 60
++MIF K S RTR++FET F+ GGH I+L P+DI +G +E D ARVL R D IM R
Sbjct: 49 LAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFR 108
Query: 61 VFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR 104
+ + + LA+++ VPV NGLTD HP Q +AD +TI E+ GR
Sbjct: 109 GYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGR 152
|
| >d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 86.4 bits (213), Expect = 8e-22
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMA 59
+S+ F +PS RT +SF+ LGG I G + + K E D R+L Y+D I+
Sbjct: 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVM 100
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R ++ + +PVIN G + HP Q + D TI +H
Sbjct: 101 RHKYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFN 145
|
| >d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Score = 75.2 bits (184), Expect = 1e-17
Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDI--QMGKREETRDAARVLCRYNDIIM 58
++ F + S RTR+SFET LG + K E D V+ Y D I+
Sbjct: 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIV 103
Query: 59 ARVFGHQDILDLAKFAT-VPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R +F+ VPV+N G HP Q + D TI E G
Sbjct: 104 MRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQG 150
|
| >d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 74.1 bits (181), Expect = 3e-17
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIY-LGPDDIQMGKREETRDAARVLCRYNDIIMA 59
++ +F +PS RTR+SFE+ LGG I + K E RD + + +Y D+I+
Sbjct: 46 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVI 105
Query: 60 RVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVG 103
R A+ A VPVIN G HP Q + D TI + G
Sbjct: 106 RHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFG 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 261 | |||
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 100.0 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 100.0 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 100.0 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 100.0 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 100.0 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1duvg1 | 150 | Ornithine transcarbamoylase {Escherichia coli [Tax | 100.0 | |
| d1pvva1 | 150 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 100.0 | |
| d1vlva1 | 152 | Ornithine transcarbamoylase {Thermotoga maritima [ | 100.0 | |
| d1otha1 | 151 | Ornithine transcarbamoylase {Human (Homo sapiens) | 100.0 | |
| d1dxha1 | 150 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 100.0 | |
| d1ml4a1 | 150 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1ekxa1 | 150 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1js1x1 | 163 | Transcarbamylase-like protein {Bacteroides fragili | 100.0 | |
| d1js1x2 | 161 | Transcarbamylase-like protein {Bacteroides fragili | 100.0 | |
| d1pg5a1 | 146 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d2at2a1 | 144 | Aspartate carbamoyltransferase catalytic subunit { | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.34 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.25 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.96 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.72 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 96.68 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.53 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.44 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.39 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.38 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.16 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.15 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.51 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.47 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.29 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.07 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.88 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 93.85 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.83 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 93.48 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 93.3 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.19 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.91 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.9 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 92.13 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.01 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 91.76 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 91.64 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.49 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 91.49 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 91.4 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.4 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 90.99 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 90.9 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 90.76 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 90.27 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 90.05 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 90.04 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.88 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.65 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 89.38 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.84 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 88.8 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.76 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.62 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 88.49 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 87.89 | |
| d2pjua1 | 186 | Propionate catabolism operon regulatory protein Pr | 87.81 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 87.51 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.73 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 86.65 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 86.53 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.48 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 86.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 86.25 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.51 | |
| d1uc8a1 | 88 | Lysine biosynthesis enzyme LysX, N-terminal domain | 84.34 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 84.19 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 83.57 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 82.31 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 81.7 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 81.26 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 80.42 |
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-82 Score=574.99 Aligned_cols=255 Identities=25% Similarity=0.305 Sum_probs=233.8
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC--CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhC-CCc
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP--DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFA-TVP 77 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~--~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~-~vP 77 (261)
++++|+|||||||+|||.||++|||++++++. ..++..||||++||++|||+|+|+|++||+.++.++++++++ +||
T Consensus 44 iallF~kpSTRTR~SFe~A~~~LGg~~i~~~~~~~~~~~~kgEsi~Dt~~vls~~~d~iv~R~~~~~~~~~~~~~~~~vP 123 (310)
T d1tuga1 44 IASCFFAASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVP 123 (310)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEECCSSCHHHHTSCCHHHHHHHHTTTCSEEEEEESSBTHHHHHTTTCTTSC
T ss_pred EEEEecCCCcchhhhHHHHHHHhccccccccccccccccCCCccHHHhhhHhhhcchheeeechhhhhhHHHHHhccCcc
Confidence 58999999999999999999999999998753 344557999999999999999999999999999999998865 899
Q ss_pred EEeC-CCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC--CchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHH
Q 024871 78 VING-LTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKAR 153 (261)
Q Consensus 78 VINa-~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~--~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~ 153 (261)
|||| +|+.+||||+|+|++||+|++|+++|+||+|+||. +||+||++.+++++| +++++++|++|+|++++++.++
T Consensus 124 VINAg~~~~~HP~Q~LaD~~Ti~e~~g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 203 (310)
T d1tuga1 124 VLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLD 203 (310)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHSCSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHH
T ss_pred EEECCCCcccchHHHHHHHHHHHHHcCCcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccc
Confidence 9996 68899999999999999999999999999999995 789999999999985 7999999999999999999999
Q ss_pred HhCCCeEEEEcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccc
Q 024871 154 KAGISKIEITNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233 (261)
Q Consensus 154 ~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~ 233 (261)
+.| ..+.+++|+++++++|||||+++|.++..++. .+.+.+.+||+|.++|+.++++++|||||| ||+||+++|+
T Consensus 204 ~~~-~~~~~~~d~~~a~~~aDvvy~~~~~~e~~~~~--~~~~~~~~~~v~~~~l~~a~~~~i~MHcLP--Rg~EIt~eV~ 278 (310)
T d1tuga1 204 EKG-IAWSLHSSIEEVMAEVDILYMTRVQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVD 278 (310)
T ss_dssp TTT-CCEEEESCGGGTTTTCSEEEECCCCGGGSCHH--HHHTTTTSSCBCGGGGTTSCSSCEEECCSC--CSSSBCGGGG
T ss_pred ccc-ceeeeeechhhhccCCceeeecccchhhhccc--chhhhhhhhhhhHHHHhcCCCCcEEeeCCC--CCCEecHhhh
Confidence 888 57899999999999999999999976543322 335567889999999999999999999999 8999999999
Q ss_pred cCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 234 EAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 234 ~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++|+|++|+||+||+|+|||||.++||
T Consensus 279 d~p~s~v~~QAeNrl~~qkAlL~~lL~ 305 (310)
T d1tuga1 279 KTPHAWYFQQAGNGIFARQALLALVLN 305 (310)
T ss_dssp GSTTBCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCcchHHHHHHhhHHHHHHHHHHHhC
Confidence 999999999999999999999999997
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-49 Score=329.53 Aligned_cols=158 Identities=47% Similarity=0.816 Sum_probs=145.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC---CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG---ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g---~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+|+|+||+||||.+||+|||++++++||+++++++|++|.|++++++++++.+ ...+++++|+++|+++||||||++
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 48999999999999999999999999999999999999999999988776532 258999999999999999999999
Q ss_pred ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 181 w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|.++++.+..+.+.+++.+|++|.++|+.++++++||||||++||.||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~v~~~p~s~i~~Qa~Ngl~vrmAlL~~~lg 160 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMG 160 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchhhhcCCccHHHHHHHhhHHHHHHHHHHHhc
Confidence 99887554444456778899999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 024871 261 L 261 (261)
Q Consensus 261 ~ 261 (261)
.
T Consensus 161 ~ 161 (163)
T d1pvva2 161 G 161 (163)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.3e-47 Score=314.94 Aligned_cols=154 Identities=38% Similarity=0.682 Sum_probs=130.2
Q ss_pred CCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
|+|+||+||||+ +||+||+++++++||+++++++|++|.|++++.++++ +.+ +++.+++|+++|++++|||||+
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~-~~i~~~~d~~~ai~~aDviyt~ 79 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETD-GSVSFTSNLEEALAGADVVYTD 79 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC-CEEEEESCHHHHHTTCSEEEEC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC-CceEEEecHHHhhhhhhheecc
Confidence 689999999997 8899999999999999999999999999998876544 455 6899999999999999999999
Q ss_pred cccCcchhHHHHHHHhhhcCCcccHHHHH-hcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHH
Q 024871 180 VWASMGQKEEAAYRKQAFQGFQVDEFLMK-LAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHA 258 (261)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~~~y~v~~~~~~-~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~ 258 (261)
+|.++++++...+..+.+.+|+++.+.+. .+++|++||||||++||.||+++|+++|+|++|+||+||+|+|||||.++
T Consensus 80 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~v~d~~~s~v~~Qa~Nrl~~~~AiL~~l 159 (161)
T d1vlva2 80 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIAT 159 (161)
T ss_dssp CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchhhhcCCccHHHHHHHccHHHHHHHHHHH
Confidence 99998876654444455667776666655 57899999999999999999999999999999999999999999999998
Q ss_pred h
Q 024871 259 L 259 (261)
Q Consensus 259 l 259 (261)
|
T Consensus 160 L 160 (161)
T d1vlva2 160 L 160 (161)
T ss_dssp H
T ss_pred h
Confidence 7
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=2.2e-46 Score=308.47 Aligned_cols=154 Identities=24% Similarity=0.282 Sum_probs=143.7
Q ss_pred CCCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecc
Q 024871 104 RLEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVW 181 (261)
Q Consensus 104 ~l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w 181 (261)
+|+|+||+||||+ +||+|||+.++++||+++++++|+++.|+++..+.+++.+ .++++++|++++++++|||||++|
T Consensus 1 kl~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~-~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 1 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKG-MKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTT-CCEEEESCTHHHHTTCSEEEECCC
T ss_pred CcCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhc-ccceeecCHHHhhccCcEEEeecc
Confidence 4899999999997 7899999999999999999999999999999998888887 578999999999999999999999
Q ss_pred cCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 182 ASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
.++++++. .++.+++..|+++.++|+.++++++|||||| ||+||+++|+++|+|+||+||+||+|+|||||+++||+
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~mHplP--Rg~EI~~~V~d~p~S~v~~QaeNg~~vrmAvL~~lLG~ 156 (157)
T d1ml4a2 80 QKERFPDE-QEYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV 156 (157)
T ss_dssp CGGGSSSH-HHHHTTTTCCCBCTTGGGGSCTTCEEECCSC--CSSSBCGGGGGSTTBCHHHHHHTHHHHHHHHHHHHHTC
T ss_pred ccccccch-hhHHhhcchhccCHHHHhhcCCCeEEecCCC--cCceecccccCCcccHHHHHHHhCHHHHHHHHHHHhCc
Confidence 98876544 3456778899999999999999999999999 79999999999999999999999999999999999995
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2e-46 Score=317.32 Aligned_cols=156 Identities=44% Similarity=0.727 Sum_probs=139.6
Q ss_pred CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
.|+|+||+||||+ |||+|||+.++++||+++++++|++|+|++++++++++ .| .++++++|+++|++++|||||
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~eai~~aDvVyt 80 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG-AKLTLTEDPKEAVKGVDFVHT 80 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT-CEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC-CeEEEEeChhhccccccEEEe
Confidence 5899999999997 89999999999999999999999999999999887764 45 689999999999999999999
Q ss_pred ecccCcchhHHH-HHHHhhhcCCcccHHHHH-hcCCCcEEeeCCCCCCC-------------------cccccccccCCC
Q 024871 179 DVWASMGQKEEA-AYRKQAFQGFQVDEFLMK-LAGPKAYFMHCLPAERG-------------------VEVTEGVIEAPY 237 (261)
Q Consensus 179 ~~w~~~~~~~~~-~~~~~~~~~y~v~~~~~~-~a~~~~~~mH~lP~~rg-------------------~Ev~~~v~~~~~ 237 (261)
++|.++++.+.. ..+.+++..|+++.+.|. .++++++||||||++|| +||+++|+++|+
T Consensus 81 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~LPa~r~~~~~~~~~~~~~~~~~~rg~Ei~~~V~d~~~ 160 (185)
T d1dxha2 81 DVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPY 160 (185)
T ss_dssp CCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHHHHHHHHCGGGGGBSSBBHHHHTSTT
T ss_pred ehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCCchhcccchhhHHHHHHHhCcccCceEEchhhhcCCc
Confidence 999988765432 344566778888877765 57899999999999876 799999999999
Q ss_pred cchHhHHhccHHHHHHHHHHHhc
Q 024871 238 SIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 238 s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|+||+||+||+|+|||||.++||
T Consensus 161 s~vf~QAeNrl~v~~Ail~~~L~ 183 (185)
T d1dxha2 161 NIAFEQAENRMHTIKAILVSTLA 183 (185)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999998
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-46 Score=313.59 Aligned_cols=157 Identities=37% Similarity=0.598 Sum_probs=135.9
Q ss_pred CCCCcEEEEEcCC-CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHH----hCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDG-NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARK----AGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~-~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~----~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+|+|+||+||||+ +||+|||+.++++||+++++++|++|.|++++.+.+++ .| ..+.+++|++++++++|||||
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g-~~~~~~~d~~~a~~~aDvvyt 80 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNG-GNITLTEDVAKGVEGADFIYT 80 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT-CEEEEESCHHHHHTTCSEEEE
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcC-CceEEEechhhccccCCEEEE
Confidence 5899999999998 89999999999999999999999999999988776653 45 689999999999999999999
Q ss_pred ecccCcchhHHH-HHHHhhhcC-CcccHHHHHhcCCCcEEeeCCCCCC------------------CcccccccccCCCc
Q 024871 179 DVWASMGQKEEA-AYRKQAFQG-FQVDEFLMKLAGPKAYFMHCLPAER------------------GVEVTEGVIEAPYS 238 (261)
Q Consensus 179 ~~w~~~~~~~~~-~~~~~~~~~-y~v~~~~~~~a~~~~~~mH~lP~~r------------------g~Ev~~~v~~~~~s 238 (261)
++|.+++++... ..+...+.+ |+++..++..++++++||||||++| |+||+++|+++|+|
T Consensus 81 ~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~LPa~re~~~~~~~~~~~~~~~~~g~EI~~~V~d~~~s 160 (183)
T d1duvg2 81 DVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAAS 160 (183)
T ss_dssp CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHHHHHHHHTTCCSBSSBBHHHHTSTTB
T ss_pred EehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccCcccccccchhhHHHHHHhCCCCCcEEchhhhcCCcc
Confidence 999988754432 223344444 5556666666899999999999876 99999999999999
Q ss_pred chHhHHhccHHHHHHHHHHHhcC
Q 024871 239 IVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 239 ~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
+||+||+||+|+|||||+++||.
T Consensus 161 ~if~QAeNrl~~~~AlL~~ll~k 183 (183)
T d1duvg2 161 IVFDQAENRMHTIKAVMVATLSK 183 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHHHHHHHhCc
Confidence 99999999999999999999984
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-45 Score=303.86 Aligned_cols=155 Identities=43% Similarity=0.720 Sum_probs=142.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH----HhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR----KAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~----~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+|+|+||+||||++||+||+++++++||+++++++|+++.|++++.+.++ +.| .++++++|++++++++|+||++
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~-~~i~~~~d~~~~~~~advi~~~ 79 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENG-TKLLLTNDPLEAAHGGNVLITD 79 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT-CCEEEESCHHHHHTTCSEEEEC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccC-CEEEEEcCHHHHHhhhhheeee
Confidence 48999999999999999999999999999999999999999988877654 345 6899999999999999999999
Q ss_pred cccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHh
Q 024871 180 VWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHAL 259 (261)
Q Consensus 180 ~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l 259 (261)
+|.++.+.++..+..+++..|+++.++|+.++++++||||||+ +++|++++|+++|+|+||+||+||+|+|||||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~-~~~ei~~~v~~~~~s~i~~Qa~Ngl~~rmAiL~~ll 158 (170)
T d1otha2 80 TWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR-KPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLL 158 (170)
T ss_dssp CSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCC-CTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCc-cCcccchhhhcCCccHHHHHHHccHHHHHHHHHHHh
Confidence 9998887666556677788999999999999999999999997 458999999999999999999999999999999999
Q ss_pred c
Q 024871 260 G 260 (261)
Q Consensus 260 ~ 260 (261)
|
T Consensus 159 ~ 159 (170)
T d1otha2 159 T 159 (170)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.9e-45 Score=301.00 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=130.0
Q ss_pred CCCcEEEEEcCC--CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 105 LEGTKVVYVGDG--NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 105 l~~~~i~~vGd~--~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|+|+||+||||. +||+|||+.++++||+++++++|++|.|+++ .+++++|++++++++||||+++|.
T Consensus 1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~-----------~~~~~~~~~ea~~~aDviy~~r~q 69 (151)
T d2at2a2 1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEEN-----------TFGTYVSMDEAVESSDVVMLLRIQ 69 (151)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcccc-----------ceeEEEechhccccCceeeeeEEE
Confidence 689999999995 5799999999999999999999999988642 467788999999999999999998
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++...+.. ...+++..|+++.+.|+.++++++||||||+|||.||+++|+++|+|+||+||+||+|+|||||.++|+
T Consensus 70 ~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~MH~LP~~Rg~EI~~~V~~~~~s~vf~QaeNr~~~rmAlL~~lL~ 146 (151)
T d2at2a2 70 NERHQSAV-SQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQCALQ 146 (151)
T ss_pred Ecccccch-hhHHhhhhhcchhhhhhhcccCeEEecCCccccCCccchhhhcCcccHHHHHHHhCHHHHHHHHHHHHH
Confidence 87654432 234567789999999999999999999999999999999999999999999999999999999999986
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=100.00 E-value=1.8e-44 Score=296.53 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=129.7
Q ss_pred CCCcEEEEEcCCCc--hHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEeccc
Q 024871 105 LEGTKVVYVGDGNN--IVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWA 182 (261)
Q Consensus 105 l~~~~i~~vGd~~~--v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~ 182 (261)
|+|+||+||||++| |+|||+.++++||+++++++|+++.++++. ..++.| .++++++|+++++++|||||+++|.
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~--~~~~~~-~~~~~~~d~~eai~~aDvvy~~~~q 77 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKE--ILDELN-YPVKEVENPFEVINEVDVLYVTRIQ 77 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHH--HHTTCC-SCEEEESCGGGTGGGCSEEEEECCC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchh--hcccCC-CeEEEEeCHHHHhhcCCeEEEeeee
Confidence 68999999999865 999999999999999887778777655432 233455 5799999999999999999999986
Q ss_pred CcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhcC
Q 024871 183 SMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALGL 261 (261)
Q Consensus 183 ~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~~ 261 (261)
...+.+ ..++.+++..||+|.++|+.++++++|||||| ||.||+++|+++|+|+||+||+||+|+|||||+++||.
T Consensus 78 ~~~~~~-~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LP--R~~EI~~~v~~~~~s~v~~Qa~Nrl~~rmAlL~~llg~ 153 (153)
T d1pg5a2 78 KERFVD-EMEYEKIKGSYIVSLDLANKMKKDSIILHPLP--RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYGE 153 (153)
T ss_dssp STTSSC-HHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC--CSSSBCGGGGGSTTBCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ehhccc-hhHHHHHHHhhhhhHHHHhccCCCeEEecCCC--CcCCcchhhccCcccHHHHHHHcCHHHHHHHHHHHhCC
Confidence 543322 23345677889999999999999999999999 78999999999999999999999999999999999984
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-44 Score=297.25 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=137.0
Q ss_pred CCCCcEEEEEcCCCc--hHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNN--IVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~--v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+|+|+||+||||++| |+|||+++++++| ..+++++|+++.+++.+.+.+++.| .++.+++|+++|+++|||||+++
T Consensus 1 kl~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~-~~~~~~~d~~~a~~~aDvvy~~~ 79 (160)
T d1ekxa2 1 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKG-IAWSLHSSIEEVMAEVDILYMTR 79 (160)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTT-CCEEECSCSTTTGGGCSEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhc-cccccccCHHHHhCcCceEEeec
Confidence 489999999999866 9999999999996 7889999999999999999888888 57999999999999999999999
Q ss_pred ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 181 w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
|.+++..+. ...+....|++|+++|+.++++++|||||| ||.||+++|+++|+|+||+||+||+|+|||||+++||
T Consensus 80 ~~~e~~~~~--~~~~~~~~~~~~~~~~~~a~~~~i~mHcLP--Rg~EI~~~V~~~~~s~v~~QaeNrl~~rmAlL~~ll~ 155 (160)
T d1ekxa2 80 VQKERLDPS--EYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLN 155 (160)
T ss_dssp CCGGGCCGG--GGGGCSCSCCBCGGGGTTCCTTCEEECCSC--CSSSBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchH--HHHHHHHHhhccHHHHHhcCcceeeecCCC--cCCccchhhhcCcccHHHHHHHhCHHHHHHHHHHHhC
Confidence 976544322 223445679999999999999999999999 7999999999999999999999999999999999997
Q ss_pred C
Q 024871 261 L 261 (261)
Q Consensus 261 ~ 261 (261)
.
T Consensus 156 ~ 156 (160)
T d1ekxa2 156 R 156 (160)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-42 Score=283.40 Aligned_cols=104 Identities=45% Similarity=0.673 Sum_probs=101.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+++|||+++++++.+|+++||||++||+++|++|+|+||+|++.++.++++++++++||||
T Consensus 47 v~~lF~epSTRTR~SFe~A~~~LG~~~i~~~~~~ss~~kgEs~~Dt~~~ls~~~d~iv~R~~~~~~~~~~~~~~~~pviN 126 (150)
T d1duvg1 47 IALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYASVPVWN 126 (150)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHSSCEEE
T ss_pred EEEEecCCCchhhhhhhhhheecCcceeeccccccccccccchHHHHHHHHhcCceEEEecccccchhhcccccceeEEc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGR 104 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~ 104 (261)
|+++.+||||+|+|+|||+|+||+
T Consensus 127 g~~~~~HPtQ~L~Dl~Ti~e~~gg 150 (150)
T d1duvg1 127 GLTNEFHPTQLLADLLTMQEHLPG 150 (150)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCChhHHHHHHHHHHHHhCc
Confidence 999999999999999999999984
|
| >d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-42 Score=284.49 Aligned_cols=103 Identities=60% Similarity=1.002 Sum_probs=100.9
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+++|||+++++++++|+++||||++||+++|++|+|+||+||+.++.++++++++++||||
T Consensus 48 ~~~lF~epSTRTR~SFe~A~~~LG~~~i~~~~~~ss~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~~pvIN 127 (150)
T d1pvva1 48 LAMIFQKPSTRTRVSFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAKYATVPVIN 127 (150)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHCSSCEEE
T ss_pred eEEEeecCCcchHHHHHHHHHhcCCceEecCccccccccCCCHHHHHHHHHcCCCeeeeeccChhHHHHHHHhcCCCEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG 103 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g 103 (261)
|+|+.+||||+|+|++||+|+||
T Consensus 128 g~~~~~HPtQaL~D~~Ti~e~~G 150 (150)
T d1pvva1 128 GLSDFSHPCQALADYMTIWEKKG 150 (150)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999997
|
| >d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4e-42 Score=282.53 Aligned_cols=104 Identities=50% Similarity=0.798 Sum_probs=101.7
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+++|||+++++++.+++++||||++||+++||+|+|+||+|++.++.+.++++++++||||
T Consensus 49 v~llF~epSTRTR~SFe~A~~~LG~~~i~l~~~~s~~~~gEs~~Dt~~~ls~~~d~iv~R~~~~~~~~~~a~~~~~PviN 128 (152)
T d1vlva1 49 LAMIFEKRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYN 128 (152)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHCSCEEE
T ss_pred EEEEeecCcccchhheehhhhhcccccccccccccccccchhHHHHHHHHhhccccEEEEecCccceeeeccccceeEEe
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhCC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVGR 104 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g~ 104 (261)
|+|+.+||||+|+|+|||+|+||+
T Consensus 129 g~~~~~HPtQ~L~D~~Ti~e~~Gr 152 (152)
T d1vlva1 129 GLTDEFHPTQALADLMTIEENFGR 152 (152)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCchHHHHHHHHHHHHhCc
Confidence 999999999999999999999984
|
| >d1otha1 c.78.1.1 (A:34-184) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-42 Score=280.14 Aligned_cols=103 Identities=51% Similarity=0.811 Sum_probs=100.3
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+++|||+++.+++.+++++||||++||+++|++|+|+||+|++.++.++++++++++||||
T Consensus 49 v~llF~epStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dt~~~ls~~~D~ivir~~~~~~~~~~a~~~~~PvIN 128 (151)
T d1otha1 49 LGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIIN 128 (151)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHCSSCEEE
T ss_pred EEEEecCCchhhHHHHHHHHHhhccceeecCCcccccccccchhHHHHHHHhcCCeEEEEecccccccccccccCccEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhC
Q 024871 81 GLTDYNHPCQIMADALTIIEHVG 103 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~g 103 (261)
|+|+.+||||+|+|+|||+|+|.
T Consensus 129 ~~~~~~HPtQ~L~D~~Ti~e~F~ 151 (151)
T d1otha1 129 GLSDLYHPIQILADYLTLQEHYS 151 (151)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCcChHHHHHHHHHHHHHhC
Confidence 99999999999999999999983
|
| >d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.9e-42 Score=280.17 Aligned_cols=102 Identities=46% Similarity=0.696 Sum_probs=100.1
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEEe
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN 80 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVIN 80 (261)
++++|+|||||||+|||.|+++|||+++.++++.++++||||++||+++|++|+|+||+||+.++.++++++++++||||
T Consensus 48 v~~lF~epStRTR~SFe~A~~~LG~~~i~l~~~~s~~~kgEs~~Dt~~~ls~~~d~iviR~~~~~~~~~~~~~~~iPVIN 127 (150)
T d1dxha1 48 IALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFN 127 (150)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHHSSSCEEE
T ss_pred EEEEEcCCCCceeEEeeeehhhcccccccccccccccccCcchhhhhhhhhcccceEEEEecchhHHHHHHHhcCCcEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHh
Q 024871 81 GLTDYNHPCQIMADALTIIEHV 102 (261)
Q Consensus 81 a~~~~~HPtQ~L~Dl~Ti~e~~ 102 (261)
|+|+.+||||+|+|+|||+|+|
T Consensus 128 g~~~~~HPtQ~L~D~~Ti~eh~ 149 (150)
T d1dxha1 128 GLTDEYHPTQMLADVLTMREHS 149 (150)
T ss_dssp EECSSCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999987
|
| >d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=1.8e-41 Score=278.04 Aligned_cols=103 Identities=34% Similarity=0.475 Sum_probs=98.4
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEe-CCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l-~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|+|||||||+|||.|+++|||+++.+ +...++++||||++||++|||+|+|+||+|++.+..++++++++++|||
T Consensus 46 v~~lF~epStRTR~SFe~A~~~LGg~~~~~~~~~~ss~~kgEsi~Dta~vls~~~d~iv~R~~~~~~~~~~~~~~~~PvI 125 (150)
T d1ml4a1 46 LATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVPVI 125 (150)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTTHHHHHHHTCSSCEE
T ss_pred EEEeeccCCchHHHHHHHHHHhcCCccccccccchhcccccchHHHHHHHHHHHHHHHhhhcccchhhhhhcccCCeeEE
Confidence 589999999999999999999999999865 6778899999999999999999999999999999999999999999999
Q ss_pred eCC-CCCCChhHHHHHHHHHHHHhC
Q 024871 80 NGL-TDYNHPCQIMADALTIIEHVG 103 (261)
Q Consensus 80 Na~-~~~~HPtQ~L~Dl~Ti~e~~g 103 (261)
||+ |+.+||||+|+|++||+|+||
T Consensus 126 Nag~~~~~HPtQ~L~D~~Ti~e~~G 150 (150)
T d1ml4a1 126 NAGDGSNQHPTQTLLDLYTIKKEFG 150 (150)
T ss_dssp EEEETTSCCHHHHHHHHHHHHHHSS
T ss_pred ECCCCCCCChHHHHHHHHHHHHHcC
Confidence 975 899999999999999999997
|
| >d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=277.52 Aligned_cols=103 Identities=31% Similarity=0.397 Sum_probs=95.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCC--CCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhh-CCCc
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP--DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKF-ATVP 77 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~--~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~-~~vP 77 (261)
++++|+|||||||+|||.|+++|||+++.+.. ..++..||||++||+++|++|+|+||+||+.++.+++++++ +++|
T Consensus 44 v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~~~~~~s~~~kgEsl~Dt~~~l~~~~d~iv~R~~~~~~~~~~~~~~~~vp 123 (150)
T d1ekxa1 44 IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSGNVP 123 (150)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEESCSTTSHHHHSCCCHHHHHHHHTTTCSEEEEEESSTTHHHHHHTTSTTSC
T ss_pred EEEEEecCCccchhHHHHHHHhccCcEEEecccccccccCCCccHHHHHHHHhhccceEEEEecccchhhhhhhhccCcC
Confidence 58999999999999999999999999998753 35556799999999999999999999999999999999997 5799
Q ss_pred EEeC-CCCCCChhHHHHHHHHHHHHhC
Q 024871 78 VING-LTDYNHPCQIMADALTIIEHVG 103 (261)
Q Consensus 78 VINa-~~~~~HPtQ~L~Dl~Ti~e~~g 103 (261)
|||| +|+.+||||+|+|+|||+|+||
T Consensus 124 VINAg~~~~~HPtQaL~D~~Ti~e~~G 150 (150)
T d1ekxa1 124 VLNAGDGSNQHPTQTLLDLFTIQETQG 150 (150)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHS
T ss_pred EEECCCCCCCchHHHHHHHHHHHHhcC
Confidence 9997 5899999999999999999997
|
| >d1js1x1 c.78.1.1 (X:1-163) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Probab=100.00 E-value=4.2e-41 Score=279.01 Aligned_cols=103 Identities=32% Similarity=0.321 Sum_probs=96.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcC------------CCCCCCHHHHHHHHhhhccEEEEeeCCcc---
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQ------------MGKREETRDAARVLCRYNDIIMARVFGHQ--- 65 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~------------~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~--- 65 (261)
++++|+|||||||+|||.|+++|||+++++++++++ .+||||++||+++||+|+|+||+||+.++
T Consensus 39 v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~~~~~~~~~~~~~~kgEs~~Dt~~vls~~~D~iviR~~~~~~~~ 118 (163)
T d1js1x1 39 LLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFENR 118 (163)
T ss_dssp EEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEECCCCSSCH
T ss_pred EEEEecCCchhHHHHHHHHHHhcCCceEeeccccccccccccccceecCcCCCCHHHHHHHHHHhCcEEEEecccccchh
Confidence 589999999999999999999999999999988765 47999999999999999999999997774
Q ss_pred -------hHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhC
Q 024871 66 -------DILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVG 103 (261)
Q Consensus 66 -------~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g 103 (261)
.+.+++++++||||||+|+.+||||+|+|+|||+|+++
T Consensus 119 ~~~~~~~~~~~~a~~s~vPVINg~~~~~HPtQ~L~Dl~Ti~E~kk 163 (163)
T d1js1x1 119 EYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKK 163 (163)
T ss_dssp HHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHHHHHHCS
T ss_pred hhhhhhhHHHHHHHhCCCCEEcCCCCCCchHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999999863
|
| >d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Transcarbamylase-like protein species: Bacteroides fragilis [TaxId: 817]
Probab=100.00 E-value=7e-41 Score=277.47 Aligned_cols=142 Identities=28% Similarity=0.493 Sum_probs=122.7
Q ss_pred EEEEEcC----CCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccCc
Q 024871 109 KVVYVGD----GNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWASM 184 (261)
Q Consensus 109 ~i~~vGd----~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~~ 184 (261)
.+.|++. .++|+||++.+++++|+++.++||++|.|+++++ ..+.+++|+++|+++|||||||+|.+|
T Consensus 7 ~~~~~~h~~~~~~~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~--------~~~~~~~d~~eav~~aDvI~td~w~s~ 78 (161)
T d1js1x2 7 VMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFV--------GNARVEYDQMKAFEGADFIYAKNWAAY 78 (161)
T ss_dssp EEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHH--------TTCEEESCHHHHHTTCSEEEECCCCCC
T ss_pred EEEeccCCCCCccHHHHHHHHHHHHcCCEEEEECCcccCCCHHHh--------CCceEecCHHHHhCCCcceeeehhhhh
Confidence 3455543 2569999999999999999999999999988764 245789999999999999999999999
Q ss_pred chhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccCCCcchHhHHhccHHHHHHHHHHHhc
Q 024871 185 GQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEAPYSIVFPQAENRMHAQNAIMLHALG 260 (261)
Q Consensus 185 ~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~~~s~~~~Qa~N~l~~r~All~~~l~ 260 (261)
++++. .++..++..|++++++++ +++|++||||||++||+||+++|+++|+|++|+||+||+|+|||||.++|+
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~l~~-~~~dai~MHclPa~Rg~EIs~eV~d~~~S~i~~QaeNrl~vrmAiL~~ll~ 152 (161)
T d1js1x2 79 TGDNY-GQILSTDRNWTVGDRQMA-VTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLE 152 (161)
T ss_dssp STTCT-TCCCCCCTTSSBCHHHHT-TSSSCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhH-HHHHHHhhhhhhhHHHhh-cCCceEEcCCCccccchhcchhhhcCCccHHHHHHHhhHHHHHHHHHHHHh
Confidence 87654 223445667888888876 557999999999999999999999999999999999999999999999985
|
| >d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=100.00 E-value=8e-41 Score=273.00 Aligned_cols=104 Identities=32% Similarity=0.436 Sum_probs=92.6
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEe-CCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l-~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|+|||||||+|||.|+++|||+++.+ ++..++++||||++||++++++|+|+||+||+.+..++.+++++++|||
T Consensus 41 l~llF~epStRTR~SFe~A~~~LGg~~i~~~~~~~~~~~kgEs~~Dt~~~l~~~~d~iv~R~~~~~~~~~~~~~~~vpvI 120 (146)
T d1pg5a1 41 ISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIPVI 120 (146)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHHHHCSSCEE
T ss_pred EEEEeeccchHHHHHHHHHHHHccCcccccccchhhcccCcccHHHHHhHhhhcCCeEEEEecccccchhhhccCCccEE
Confidence 589999999999999999999999999977 4566889999999999999999999999999999999999999999999
Q ss_pred eC-CCCCCChhHHHHHHHHHHHHhCC
Q 024871 80 NG-LTDYNHPCQIMADALTIIEHVGR 104 (261)
Q Consensus 80 Na-~~~~~HPtQ~L~Dl~Ti~e~~g~ 104 (261)
|| +|+.+||||+|+|+|||+|+||+
T Consensus 121 Nag~~~~~HP~Q~L~D~~Ti~e~~gt 146 (146)
T d1pg5a1 121 NAGDGKHEHPTQAVIDIYTINKHFNT 146 (146)
T ss_dssp EEEETTTBCHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCCCCccHHHHHHHHHHHHhCc
Confidence 97 68999999999999999999984
|
| >d2at2a1 c.78.1.1 (A:1-144) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.8e-40 Score=266.53 Aligned_cols=104 Identities=28% Similarity=0.344 Sum_probs=99.2
Q ss_pred CEeeccCCChhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhh-ccEEEEeeCCcchHHHHhhhCCCcEE
Q 024871 1 MSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVI 79 (261)
Q Consensus 1 l~~lF~~~StRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~-~D~iv~R~~~~~~~~~~a~~~~vPVI 79 (261)
++++|+|||||||+|||.||++|||+++++++..++++||||++||++++++| +|++|+||+.++.++++++++++|||
T Consensus 39 ~~~lF~epStRTR~SFe~A~~~LGg~~~~l~~~~~~~~~gEs~~d~~~~l~~~~~d~iv~R~~~~~~~~~~a~~~~vPvI 118 (144)
T d2at2a1 39 AANLFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIPIL 118 (144)
T ss_pred eeEEEecCCcchhHHHHHHHHHhcchhhcccchhhccccchHHHHHHHHHhhcceeEEEeecccccccccccccCceeEE
Confidence 58999999999999999999999999999999999999999999999999775 89999999999999999999999999
Q ss_pred eC-CCCCCChhHHHHHHHHHHHHhCC
Q 024871 80 NG-LTDYNHPCQIMADALTIIEHVGR 104 (261)
Q Consensus 80 Na-~~~~~HPtQ~L~Dl~Ti~e~~g~ 104 (261)
|| +++.+||||+|+|++||+|+||+
T Consensus 119 Nag~~~~~HP~Q~LaD~~Ti~e~~gs 144 (144)
T d2at2a1 119 NAGDGCGQHPTQSLLDLMTIYEEFNT 144 (144)
T ss_pred ECCCCCCCchHHHHHHHHHHHHHhCc
Confidence 97 57889999999999999999984
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.34 E-value=0.00046 Score=55.63 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=72.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.++|++|+++|= +++...++..+..||+++....|..-+.+ .....++++.++++|+|+.-. +
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~--------------~~~~~~l~ell~~sDiv~~~~--p 101 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGP--------------WRFTNSLEEALREARAAVCAL--P 101 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSS--------------SCCBSCSHHHHTTCSEEEECC--C
T ss_pred cccCceEEEecc-ccccccceeeeeccccccccccccccccc--------------eeeeechhhhhhccchhhccc--c
Confidence 489999999994 78999999999999999999887542211 123568999999999999853 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
...+ ...-++++.++..+++++|.-+. ||.=|++
T Consensus 102 l~~~----------t~~li~~~~l~~mk~~ailIN~~---RG~ivd~ 135 (181)
T d1qp8a1 102 LNKH----------TRGLVKYQHLALMAEDAVFVNVG---RAEVLDR 135 (181)
T ss_dssp CSTT----------TTTCBCHHHHTTSCTTCEEEECS---CGGGBCH
T ss_pred cccc----------cccccccceeeeccccceEEecc---ccccccc
Confidence 2221 12458999999999999999865 4544443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.25 E-value=0.00054 Score=55.78 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++| .+++...++..+..||+++....|..-. .. ....+ +....++++.++.+|+|..-. +
T Consensus 46 eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~-~~-----~~~~~---~~~~~~l~~ll~~sD~i~~~~--p 113 (193)
T d1mx3a1 46 RIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSD-GV-----ERALG---LQRVSTLQDLLFHSDCVTLHC--G 113 (193)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCT-TH-----HHHHT---CEECSSHHHHHHHCSEEEECC--C
T ss_pred eeeCceEEEec-cccccccceeeeeccccceeeccCcccc-cc-----hhhhc---cccccchhhccccCCEEEEee--c
Confidence 48999999999 4899999999999999999988874322 11 12233 345678999999999998864 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC 219 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~ 219 (261)
...+ ...-++.+.++..++++++.-.
T Consensus 114 lt~~----------T~~li~~~~l~~mk~~a~lIN~ 139 (193)
T d1mx3a1 114 LNEH----------NHHLINDFTVKQMRQGAFLVNT 139 (193)
T ss_dssp CCTT----------CTTSBSHHHHTTSCTTEEEEEC
T ss_pred cccc----------chhhhhHHHHhccCCCCeEEec
Confidence 1111 1244788888888888887764
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.0018 Score=52.00 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++| .+++...++..+..||+++....|..-... .......++++.++.+|+|..-. +
T Consensus 41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------~~~~~~~~l~ell~~sDii~i~~--p 105 (188)
T d1sc6a1 41 EARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPL------------GNATQVQHLSDLLNMSDVVSLHV--P 105 (188)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCC------------TTCEECSCHHHHHHHCSEEEECC--C
T ss_pred cccceEEEEee-cccchhhhhhhcccccceEeeccccccchh------------hhhhhhhhHHHHHhhccceeecc--c
Confidence 38899999999 488999999999999999999987543221 11233568999999999998853 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
...+ ..+-|+++.++..++++++.-.- ||.=|+.
T Consensus 106 lt~~----------T~~li~~~~l~~mk~~a~lIN~a---RG~lvde 139 (188)
T d1sc6a1 106 ENPS----------TKNMMGAKEISLMKPGSLLINAS---RGTVVDI 139 (188)
T ss_dssp SSTT----------TTTCBCHHHHHHSCTTEEEEECS---CSSSBCH
T ss_pred CCcc----------hhhhccHHHHhhCCCCCEEEEcC---cHHhhhh
Confidence 1221 12568999999999999988754 4544443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.72 E-value=0.0021 Score=52.04 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++++++| .+++....+..+..||+++....|........ ...+ .....++++.++.+|+|..-. +
T Consensus 44 ~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-----~~~~---~~~~~~l~~ll~~sD~v~l~~--p 112 (191)
T d1gdha1 44 KLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-----ASYQ---ATFHDSLDSLLSVSQFFSLNA--P 112 (191)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-----HHHT---CEECSSHHHHHHHCSEEEECC--C
T ss_pred eecccceEEee-cccchHHHHHHHHhhccccccccccccccchh-----hccc---ccccCCHHHHHhhCCeEEecC--C
Confidence 47899999999 48899999999999999998887744322111 1222 234578999999999998753 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVT 229 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~ 229 (261)
...+. ..-|+++.++..+++++|.-+. ||.=|+
T Consensus 113 lt~~T----------~~li~~~~l~~mk~~a~lIN~s---RG~ivd 145 (191)
T d1gdha1 113 STPET----------RYFFNKATIKSLPQGAIVVNTA---RGDLVD 145 (191)
T ss_dssp CCTTT----------TTCBSHHHHTTSCTTEEEEECS---CGGGBC
T ss_pred CCchH----------hheecHHHhhCcCCccEEEecC---Cccchh
Confidence 22211 2458889998888898888754 454444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=96.68 E-value=0.0037 Score=50.12 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=73.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.++|++|+++|- +++....+..+..||+++....|... ++.. .+..+ +....++++.++++|+|..-. +
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~--~~~~---~~~~~---~~~~~~l~~~l~~sD~v~~~~--p 109 (188)
T d2naca1 41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRL--PESV---EKELN---LTWHATREDMYPVCDVVTLNC--P 109 (188)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCC--CHHH---HHHHT---CEECSSHHHHGGGCSEEEECS--C
T ss_pred eccccceeeccc-cccchhhhhhhhccCceEEEEeeccc--cccc---ccccc---ccccCCHHHHHHhccchhhcc--c
Confidence 489999999995 88999999999999999988877432 2221 22333 345778999999999998753 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
...+ ...-++.+.++..+++++|.-+. ||.=|++
T Consensus 110 lt~~----------T~~li~~~~l~~mk~ga~lIN~a---RG~ivd~ 143 (188)
T d2naca1 110 LHPE----------TEHMINDETLKLFKRGAYIVNTA---RGKLCDR 143 (188)
T ss_dssp CCTT----------TTTCBSHHHHTTSCTTEEEEECS---CGGGBCH
T ss_pred cccc----------chhhhHHHHHHhCCCCCEEEecC---chhhhhH
Confidence 1221 13558999999999998888754 4544443
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.04 Score=43.26 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 90 QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 90 Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.+.| ++.+..+ .|.|++++++|- +.+....+..+..+|++++++-+ ++.-.-++.-.| ++ ...+++
T Consensus 8 ~S~~~--~~~r~t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~-----dp~~al~A~~dG---~~-v~~~~~ 75 (163)
T d1li4a1 8 ESLID--GIKRATDVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEI-----DPINALQAAMEG---YE-VTTMDE 75 (163)
T ss_dssp HHHHH--HHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTT---CE-ECCHHH
T ss_pred hhHHH--HHHHHhCceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeec-----ccchhHHhhcCc---eE-eeehhh
Confidence 44443 3445555 489999999995 67999999999999999987744 221111122234 23 457899
Q ss_pred HhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccc
Q 024871 169 VVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVI 233 (261)
Q Consensus 169 a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~ 233 (261)
+++.+|++.|.+ |. .--|+.+.|+..|+++++.-.+= .+.||+-+-+
T Consensus 76 a~~~adivvtaT----Gn------------~~vI~~eh~~~MKdgaIL~N~Gh--fd~EId~~~L 122 (163)
T d1li4a1 76 ACQEGNIFVTTT----GC------------IDIILGRHFEQMKDDAIVCNIGH--FDVEIDVKWL 122 (163)
T ss_dssp HTTTCSEEEECS----SC------------SCSBCHHHHTTCCTTEEEEECSS--STTSBCHHHH
T ss_pred hhhhccEEEecC----CC------------ccchhHHHHHhccCCeEEEEecc--ccceecHHHH
Confidence 999999999985 42 23599999999999999998776 4577776544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.44 E-value=0.0059 Score=49.45 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++|= +++....+..+..||++++...|..-.... ..+. ..++++.++.+|+|..-. .
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~-~~~l~~l~~~~D~v~~~~--p 106 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDFD-YVSLEDLFKQSDVIDLHV--P 106 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTCE-ECCHHHHHHHCSEEEECC--C
T ss_pred cccceeeeeeec-ccccccccccccccceeeeccCCccchhhh-----------cchh-HHHHHHHHHhcccceeee--c
Confidence 488999999994 889999999999999999988884322111 1223 358999999999998864 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEG 231 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~ 231 (261)
...+. ..-|+++.++..++++++.-.. ||.=|+++
T Consensus 107 lt~~T----------~~li~~~~l~~mk~~a~lIN~a---RG~vvde~ 141 (199)
T d1dxya1 107 GIEQN----------THIINEAAFNLMKPGAIVINTA---RPNLIDTQ 141 (199)
T ss_dssp CCGGG----------TTSBCHHHHHHSCTTEEEEECS---CTTSBCHH
T ss_pred ccccc----------cccccHHHhhccCCceEEEecc---cHhhhhhH
Confidence 12211 2448999999999999998854 66555543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.0082 Score=47.94 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++++++| .+++..-.+..+..||+++....|.. .++ .....+ ++ ..+++|.++++|+|..-. +
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~---~~~---~~~~~~---~~-~~~l~ell~~sDiv~~~~--P 107 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYV---SPA---RAAQLG---IE-LLSLDDLLARADFISVHL--P 107 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTS---CHH---HHHHHT---CE-ECCHHHHHHHCSEEEECC--C
T ss_pred cccceeeeecc-ccchhHHHHHHhhhccceEEeecCCC---Chh---HHhhcC---ce-eccHHHHHhhCCEEEEcC--C
Confidence 38899999999 58899999999999999999887743 111 122333 23 458999999999998854 2
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
...+. ..-|+++.++..++++++.-.. ||.=|++
T Consensus 108 lt~~T----------~~lin~~~l~~mk~~a~lIN~s---RG~iVde 141 (184)
T d1ygya1 108 KTPET----------AGLIDKEALAKTKPGVIIVNAA---RGGLVDE 141 (184)
T ss_dssp CSTTT----------TTCBCHHHHTTSCTTEEEEECS---CTTSBCH
T ss_pred CCchh----------hhhhhHHHHhhhCCCceEEEec---chhhhhh
Confidence 22221 2458999999999999988754 4544443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.38 E-value=0.01 Score=46.28 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=76.3
Q ss_pred HHHHhCCCCCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEE
Q 024871 98 IIEHVGRLEGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 98 i~e~~g~l~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDvi 176 (261)
..+.+|++++++|+++|- +.++.+.+..+...|. +++++... .+...+.+++.|+ ...-.+++.++++++|+|
T Consensus 15 a~~~~~~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt----~~ka~~l~~~~~~-~~~~~~~~~~~l~~~Div 88 (159)
T d1gpja2 15 AERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRT----YERAVELARDLGG-EAVRFDELVDHLARSDVV 88 (159)
T ss_dssp HHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSS----HHHHHHHHHHHTC-EECCGGGHHHHHHTCSEE
T ss_pred HHHHhCCcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCc----HHHHHHHHHhhhc-ccccchhHHHHhccCCEE
Confidence 367789999999999997 7788888887777787 67777642 1233345666663 445567889999999999
Q ss_pred EEecccCcchhHHHHHHHhhhcCCcccHHHHHhc------CCCcEEee-CCCCCCCcccccccccCCCc
Q 024871 177 YSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLA------GPKAYFMH-CLPAERGVEVTEGVIEAPYS 238 (261)
Q Consensus 177 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a------~~~~~~mH-~lP~~rg~Ev~~~v~~~~~s 238 (261)
++.+ +. ..|-++.+.++.. +...+|+- ..|+ .|+.++-+-+..
T Consensus 89 i~at----ss-----------~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr----~vd~~v~~~~~v 138 (159)
T d1gpja2 89 VSAT----AA-----------PHPVIHVDDVREALRKRDRRSPILIIDIANPR----DVEEGVENIEDV 138 (159)
T ss_dssp EECC----SS-----------SSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC----SBCTTGGGSTTE
T ss_pred EEec----CC-----------CCccccHhhhHHHHHhcccCCCeEEEeecCCC----CcChhhhccCCe
Confidence 9975 21 1256777776532 12224444 5784 334555554443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.16 E-value=0.0023 Score=52.01 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEecccC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDVWAS 183 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~w~~ 183 (261)
.+.|++|+++| .+++..-.+..+..||+++....|.. .+. ....+ + ...++++.++++|+|..-. +
T Consensus 40 el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~---~~~----~~~~~---~-~~~~l~~~l~~sDii~~~~--p 105 (197)
T d1j4aa1 40 EVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFR---NPE----LEKKG---Y-YVDSLDDLYKQADVISLHV--P 105 (197)
T ss_dssp CGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC---CHH----HHHTT---C-BCSCHHHHHHHCSEEEECS--C
T ss_pred cccCCeEEEec-ccccchhHHHhHhhhcccccccCccc---ccc----cccce---e-eeccccccccccccccccC--C
Confidence 37899999999 48899999999999999999887742 111 11222 1 2468999999999998853 1
Q ss_pred cchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCccccc
Q 024871 184 MGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTE 230 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~ 230 (261)
...+ ...-++++.++..+++++|.-.. ||.=|++
T Consensus 106 lt~~----------T~~li~~~~l~~mk~~a~lIN~s---RG~ivde 139 (197)
T d1j4aa1 106 DVPA----------NVHMINDESIAKMKQDVVIVNVS---RGPLVDT 139 (197)
T ss_dssp CCGG----------GTTCBSHHHHHHSCTTEEEEECS---CGGGBCH
T ss_pred cccc----------ccccccHHHHhhhCCccEEEecC---chhhhhh
Confidence 1211 12568999999999998888753 4544433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.15 E-value=0.017 Score=42.02 Aligned_cols=72 Identities=6% Similarity=-0.031 Sum_probs=52.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|++|++||. ++++.+.+..+...|+++++++|.. .++..+.+++.+. .+....-.++-++++++++..+
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~---~~~~~~~~~~~~i-~~~~~~~~~~dl~~~~lv~~at 80 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTF---IPQFTVWANEGML-TLVEGPFDETLLDSCWLAIAAT 80 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSC---CHHHHHHHTTTSC-EEEESSCCGGGGTTCSEEEECC
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccC---ChHHHHHHhcCCc-eeeccCCCHHHhCCCcEEeecC
Confidence 689999999995 7899999999999999999998843 4555444443332 2222222245689999999875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.05 E-value=0.022 Score=44.79 Aligned_cols=116 Identities=10% Similarity=0.018 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHH
Q 024871 90 QIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKE 168 (261)
Q Consensus 90 Q~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~ 168 (261)
|.+.|- |.+..+ -|.|++++.+|- +.+....+..+..+|+.++++= .+| +.-++..- ..++ ..++++
T Consensus 7 ~S~~d~--i~r~t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E-----~DP--i~alqA~m-dGf~-v~~~~~ 74 (163)
T d1v8ba1 7 HSLPDG--LMRATDFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITE-----IDP--ICAIQAVM-EGFN-VVTLDE 74 (163)
T ss_dssp HHHHHH--HHHHHCCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-----SCH--HHHHHHHT-TTCE-ECCHHH
T ss_pred hhHHHH--HHHHhCceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEe-----cCc--hhhHHHHh-cCCc-cCchhH
Confidence 556653 344444 489999999995 6688888888888999988762 333 12233321 1234 368999
Q ss_pred HhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCCCCCCcccccccccC
Q 024871 169 VVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLPAERGVEVTEGVIEA 235 (261)
Q Consensus 169 a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP~~rg~Ev~~~v~~~ 235 (261)
+++.+|+++|.+ |.+ =-|+.+.|+..|+++|+...+=. ..||+-+-+..
T Consensus 75 a~~~aDi~vTaT----Gn~------------~vI~~~h~~~MKdgaIl~N~GHf--d~EIdv~~L~~ 123 (163)
T d1v8ba1 75 IVDKGDFFITCT----GNV------------DVIKLEHLLKMKNNAVVGNIGHF--DDEIQVNELFN 123 (163)
T ss_dssp HTTTCSEEEECC----SSS------------SSBCHHHHTTCCTTCEEEECSST--TTSBCHHHHHT
T ss_pred ccccCcEEEEcC----CCC------------ccccHHHHHHhhCCeEEEecccc--chhhhhHHHHh
Confidence 999999999986 531 24899999999999999988764 46887765543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.51 E-value=0.095 Score=40.93 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCc-hHHHHHHHH---hcCC-cEEEEeCCCCCCCC--HHHHHH-HHHhC-CCeEEEEcCHHHHhCCCCEE
Q 024871 106 EGTKVVYVGDGNN-IVHSWLLMA---SVIP-FHFVCACPKGFEPD--KETVEK-ARKAG-ISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 106 ~~~~i~~vGd~~~-v~~S~~~~~---~~~g-~~~~~~~P~~~~~~--~~~~~~-~~~~g-~~~i~~~~d~~~a~~~aDvi 176 (261)
+..||+++|.++- +......++ ..+. -++++.--.+-.+. ...++. ....+ ..+++.+.|.+|++++||+|
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 3579999998642 333332333 2232 36776643221111 111111 11223 24788899999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 82 vita 85 (167)
T d1u8xx1 82 MAHI 85 (167)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.47 E-value=0.046 Score=41.80 Aligned_cols=64 Identities=20% Similarity=0.126 Sum_probs=47.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
.||+++|- +++..|++..+..-|.+++... ++++.++.+++.|... ...++ .++++++|+|+.-
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d-----~~~~~~~~a~~~~~~~-~~~~~-~~~~~~~DiIila 64 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVS-----RQQSTCEKAVERQLVD-EAGQD-LSLLQTAKIIFLC 64 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHHHTTSCS-EEESC-GGGGTTCSEEEEC
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEE-----CCchHHHHHHHhhccc-eeeee-ccccccccccccc
Confidence 48999994 8899999988888899887554 4566777788877321 33444 5689999998875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.29 E-value=0.1 Score=39.82 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCC------------CeEEEEcCHHHHhCCCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGI------------SKIEITNDPKEVVQGAD 174 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~------------~~i~~~~d~~~a~~~aD 174 (261)
.+||+++|- +++.+.++..++.-|.++++... .++..+.+++.+. .....+.|++|+++++|
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDI-----DAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 479999995 89999999999999999887764 3445555555441 12235788999999999
Q ss_pred EEEEeccc
Q 024871 175 VVYSDVWA 182 (261)
Q Consensus 175 viy~~~w~ 182 (261)
+|+...+.
T Consensus 75 ~iii~v~~ 82 (184)
T d1bg6a2 75 VILIVVPA 82 (184)
T ss_dssp EEEECSCG
T ss_pred EEEEEEch
Confidence 99987653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.07 E-value=0.12 Score=40.58 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE-Ec---CHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI-TN---DPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~-~~---d~~~a~~~aDviy~~~ 180 (261)
.+..||+++|- +.+..+-+..+..+|..++..- ...+.+++.+......++. .. .+++.+++||+|++..
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D-----~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aa 103 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFD-----INVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAV 103 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE-----SCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEe-----CcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEee
Confidence 45689999996 7788888888999999988663 3455555555432122232 22 3578999999999986
Q ss_pred ccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEee
Q 024871 181 WASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218 (261)
Q Consensus 181 w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH 218 (261)
-.. + ...|.-|++++++..|+..++.-
T Consensus 104 lip-G----------~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 104 LVP-G----------RRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CCT-T----------SSCCCCBCHHHHTTSCTTCEEEE
T ss_pred ecC-C----------cccCeeecHHHHhhcCCCcEEEE
Confidence 221 2 23578899999999999888664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.88 E-value=0.18 Score=38.20 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=47.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCH-HHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAGISKIEITNDP-KEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~-~~a~~~aDviy~~~ 180 (261)
+||+++| .+++..|++..+...|. +++. |..+++.++.+++.|... ....+. +....++|+|+...
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~-----~D~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYG-----YDINPESISKAVDLGIID-EGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEE-----ECSCHHHHHHHHHTTSCS-EEESCGGGGGGTCCSEEEECS
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEE-----EECChHHHHHHHHhhcch-hhhhhhhhhhccccccccccC
Confidence 4799999 58999999999887774 5543 456678888888887432 334444 44557899998764
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.17 Score=40.19 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCcEE--EEeCCCCCC------CCHHHHHHHHHhCCCeEEEEcC----HHHHh--C
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPFHF--VCACPKGFE------PDKETVEKARKAGISKIEITND----PKEVV--Q 171 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~~~--~~~~P~~~~------~~~~~~~~~~~~g~~~i~~~~d----~~~a~--~ 171 (261)
+.+||+|+|........+-.+. .-|.++ ++..|+... -.......+.+.+......... ..+.+ .
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~-~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALL-SSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHH-HTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEECCCHHHHHHHHHHH-hCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 4589999997433222222222 234443 344443211 1123334455565432221111 12223 2
Q ss_pred CCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCCc
Q 024871 172 GADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERGV 226 (261)
Q Consensus 172 ~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg~ 226 (261)
+.|++..-.| ++.+.+++++..+..++=+|| ||.+||.
T Consensus 81 ~~d~~v~~~~-----------------~~ii~~~il~~~k~g~iN~Hps~LP~yRG~ 120 (206)
T d1fmta2 81 QADVMVVVAY-----------------GLILPKAVLEMPRLGCINVHGSLLPRWRGA 120 (206)
T ss_dssp TCSEEEEESC-----------------CSCCCHHHHHSSTTCEEEEESSSTTTTBSS
T ss_pred cceEEEeecc-----------------ccccchhhHhcCCCCeeecCchhhHhhhhh
Confidence 5677777765 356888999888888999999 7998863
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.12 Score=40.54 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE
Q 024871 84 DYNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI 162 (261)
Q Consensus 84 ~~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~ 162 (261)
+..=||-+++ ++.|.|+++ .++|++|++||...-|..-+..++..-|.+++.+.-.
T Consensus 14 ~~~~PcTp~a-I~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~---------------------- 70 (166)
T d1b0aa1 14 PRLRPCTPRG-IVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF---------------------- 70 (166)
T ss_dssp CSSCCHHHHH-HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS----------------------
T ss_pred CCCCCchHHH-HHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccc----------------------
Confidence 4567887766 445566666 6999999999998889999999988899999877321
Q ss_pred EcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 163 TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 163 ~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
+.++.+.+++||+|++-. |.. --++.+.+ ++++++.-++-
T Consensus 71 t~~l~~~~~~ADivI~a~----G~p------------~~i~~~~v---k~g~vvIDvGi 110 (166)
T d1b0aa1 71 TKNLRHHVENADLLIVAV----GKP------------GFIPGDWI---KEGAIVIDVGI 110 (166)
T ss_dssp CSCHHHHHHHCSEEEECS----CCT------------TCBCTTTS---CTTCEEEECCC
T ss_pred cchhHHHHhhhhHhhhhc----cCc------------cccccccc---CCCcEEEecCc
Confidence 347788889999999975 432 22555543 46777777654
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.25 Score=39.44 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=57.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEE--EeCCCCCCCCHHHHHHHHHhCCCeEEE----Ec-----CHHHHh--CCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFV--CACPKGFEPDKETVEKARKAGISKIEI----TN-----DPKEVV--QGAD 174 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~--~~~P~~~~~~~~~~~~~~~~g~~~i~~----~~-----d~~~a~--~~aD 174 (261)
+||+++|....-.. .+..+..-|.+++ +..|+.-.-...+...+++.+..-+.. .. +.-+.+ .+.|
T Consensus 1 MkI~~~G~~~~~~~-~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~D 79 (203)
T d2bw0a2 1 MKIAVIGQSLFGQE-VYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAE 79 (203)
T ss_dssp CEEEEECCHHHHHH-HHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCS
T ss_pred CEEEEEcCCHHHHH-HHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCC
Confidence 58999997432222 2222223355543 344544333445666777877532211 11 112222 3568
Q ss_pred EEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 175 VVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 175 viy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
++..-.| ++.+.+++++..+-.++=+|| ||.+||
T Consensus 80 liv~~~~-----------------~~ii~~~~l~~~~~g~iN~H~slLP~yrG 115 (203)
T d2bw0a2 80 LNVLPFC-----------------SQFIPMEIISAPRHGSIIYHPSLLPRHRG 115 (203)
T ss_dssp EEEESSC-----------------SSCCCHHHHTCSTTCEEEEESSCTTTTBS
T ss_pred ceEEeec-----------------chhhhhhhhhhhhhHhhhhhhcccccccc
Confidence 8877655 255888888877777888999 788875
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.30 E-value=0.59 Score=35.94 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=43.4
Q ss_pred cEEEEEcCCC-chHH---HHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHH-----HHhC-CCeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGN-NIVH---SWLLMASVIP-FHFVCACPKGFEPDKETVEKA-----RKAG-ISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~-~v~~---S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~-----~~~g-~~~i~~~~d~~~a~~~aDvi 176 (261)
.||+++|-++ .+.- +++.....++ .++++.-.++=....+.++.. .+.+ ..+++.+.|..+++++||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 6899999753 2333 2333334444 478777653311112222321 1222 24778899999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.+.
T Consensus 82 v~ta 85 (169)
T d1s6ya1 82 TTQF 85 (169)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.19 E-value=0.1 Score=39.76 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=49.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++...++.-+..-|.++++. ...++..+.+.+.+. ...++++|+++++|+|++-.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~-----d~~~~~~~~~~~~~~---~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVS-----DRNPEAIADVIAAGA---ETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEE-----CSCHHHHHHHHHTTC---EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEE-----eCCcchhHHHHHhhh---hhcccHHHHHhCCCeEEEEc
Confidence 4899999 5788888887777789887754 455666666666662 45789999999999999863
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.91 E-value=0.1 Score=39.63 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=47.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- +|+..+++..+..-|.++++..+. .+...+.++++|. ..+.|.+++++++|+|..-.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~----~~~~~~l~~~~g~---~~~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSS----LERSKEIAEQLAL---PYAMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSS----HHHHHHHHHHHTC---CBCSSHHHHHHTCSEEEECS
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcCh----HHhHHhhccccce---eeechhhhhhhccceeeeec
Confidence 48999995 889999988877778888776532 1222333455663 45678999999999999864
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.23 Score=38.84 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEE
Q 024871 85 YNHPCQIMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 85 ~~HPtQ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
..=||-.++=+ .|.|+++ .++|+++++||..+.|..=++.++..-|.+++.+.-. +
T Consensus 17 ~~~PcTp~aii-~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~----------------------t 73 (170)
T d1a4ia1 17 CFIPCTPKGCL-ELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK----------------------T 73 (170)
T ss_dssp CCCCHHHHHHH-HHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----------------------C
T ss_pred CCCCChHHHHH-HHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecc----------------------c
Confidence 45599888754 5555666 6999999999998889999988888889999987531 3
Q ss_pred cCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeCCC
Q 024871 164 NDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHCLP 221 (261)
Q Consensus 164 ~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~lP 221 (261)
.++.+-+++||+|++-. |..+ + ++.+. .++++++...+.
T Consensus 74 ~~l~~~~~~aDivi~a~----G~~~-----------~-i~~~~---vk~g~iviDvgi 112 (170)
T d1a4ia1 74 AHLDEEVNKGDILVVAT----GQPE-----------M-VKGEW---IKPGAIVIDCGI 112 (170)
T ss_dssp SSHHHHHTTCSEEEECC----CCTT-----------C-BCGGG---SCTTCEEEECCC
T ss_pred ccHHHHHhhccchhhcc----cccc-----------c-ccccc---ccCCCeEeccCc
Confidence 46677888999999865 4321 2 55544 357778888765
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=92.13 E-value=0.49 Score=36.83 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=59.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHh---cCC----cEEEEeC-CCCCCCCHHHHHHHHHh---CCCeEEEEcCHHHHhCCCC
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMAS---VIP----FHFVCAC-PKGFEPDKETVEKARKA---GISKIEITNDPKEVVQGAD 174 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~---~~g----~~~~~~~-P~~~~~~~~~~~~~~~~---g~~~i~~~~d~~~a~~~aD 174 (261)
+-+||+++|-.+++..|++..++ .|| ..+.+.- |+....-+.+.-..... ....+..+.+..++++++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 45799999988999999987654 355 2444442 11111001110011111 1245677899999999999
Q ss_pred EEEEec-ccCcchhHHHHH---HHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 175 VVYSDV-WASMGQKEEAAY---RKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 175 viy~~~-w~~~~~~~~~~~---~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
+|+... -++...++|.+- ....+.. +-+++.+.++++++++
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~--~~~~i~~~a~~~~~vl 147 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFAD--QGKALNAVASKNVKVL 147 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHH--HHHHHHHHSCTTCEEE
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHH--HHHHHHhhCCCCcEEE
Confidence 988864 222222223221 1112211 3445555577788664
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.01 E-value=0.087 Score=40.13 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=42.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHH--hCCCeEEEEcCHHHHhCCCCEEEEe
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARK--AGISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~--~g~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
-.+.||+++| .++|..+++..+...| -++++.-.++-....+.+|.... .....+.+..+..+++++||+|...
T Consensus 4 ~~~~KI~IiG-aG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvit 81 (148)
T d1ldna1 4 NGGARVVVIG-AGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVIC 81 (148)
T ss_dssp TTSCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEEC
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEe
Confidence 3578999999 4888887776665544 47776643211111111222111 1112334444446789999999875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.76 E-value=0.16 Score=38.15 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=38.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhc--CCcEEEEeCCCCCCCCHHHH-----HHHHHhC-CCeEEEEcCHHHHhCCCCEEEEe
Q 024871 108 TKVVYVGDGNNIVHSWLLMASV--IPFHFVCACPKGFEPDKETV-----EKARKAG-ISKIEITNDPKEVVQGADVVYSD 179 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~--~g~~~~~~~P~~~~~~~~~~-----~~~~~~g-~~~i~~~~d~~~a~~~aDviy~~ 179 (261)
+||+++|- ++|..+++..+.. +.-++++.- .+++.. +...... .....+..+..+++++||+|...
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D-----i~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLID-----VDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEEC-----SSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEe-----cccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 58999995 7787776655443 335777664 222221 1111111 11223344446789999999887
Q ss_pred c
Q 024871 180 V 180 (261)
Q Consensus 180 ~ 180 (261)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=91.64 E-value=0.24 Score=37.85 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCCc-EEEEeCCCCCCCCHHHHHHH--HH-hC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIPF-HFVCACPKGFEPDKETVEKA--RK-AG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g~-~~~~~~P~~~~~~~~~~~~~--~~-~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..||+++|- ++|..+++..+...++ ++++.-...-.......+.. .. .+ ...+..+.+.++++++||+|....
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita 84 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 84 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence 4589999996 8888887766655553 77776433211111222221 11 11 235666788889999999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.33 Score=38.24 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=49.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHH-----------HhCC---------------CeEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKAR-----------KAGI---------------SKIE 161 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-----------~~g~---------------~~i~ 161 (261)
+||+++|- +.+..+++..++..|.++++.-+. ++.++.++ +.+. ..+.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~-----~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~ 78 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQT-----EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 78 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECC-----hHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc
Confidence 69999996 779999999999999999887653 22222111 1111 2578
Q ss_pred EEcCHHHHhCCCCEEEEec
Q 024871 162 ITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 162 ~~~d~~~a~~~aDviy~~~ 180 (261)
.+.|..+++++||+|+=-.
T Consensus 79 ~~~d~~~a~~~ad~ViEav 97 (192)
T d1f0ya2 79 TSTDAASVVHSTDLVVEAI 97 (192)
T ss_dssp EESCHHHHTTSCSEEEECC
T ss_pred ccchhHhhhcccceehhhc
Confidence 8999999999999988764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.49 E-value=0.34 Score=36.28 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=45.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++| .+++.++++..+..-|.+++..... ........++..+ +..+++|+++++|+|++-.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~-----~~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEG---RSPSTIERARTVG-----VTETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTT---CCHHHHHHHHHHT-----CEECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCc---hhHHHHHhhhccc-----ccccHHHHHhhcCeEEEEe
Confidence 4899999 4899999999888889988766432 2222222233333 2457899999999999864
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.40 E-value=0.28 Score=38.72 Aligned_cols=67 Identities=27% Similarity=0.292 Sum_probs=46.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
|++++|+++|-+ .-.|..++=+.=-|+++++..- +.....+++++.|. + .-+++||++.||+|+...
T Consensus 14 ik~k~IaViGYG-sQG~AhAlNLrDSG~~V~VGLr----~gs~s~~~A~~~Gf---~-v~~~~eA~~~aDiim~L~ 80 (182)
T d1np3a2 14 IQGKKVAIIGYG-SQGHAHACNLKDSGVDVTVGLR----SGSATVAKAEAHGL---K-VADVKTAVAAADVVMILT 80 (182)
T ss_dssp HHTSCEEEECCS-HHHHHHHHHHHHTTCCEEEECC----TTCHHHHHHHHTTC---E-EECHHHHHHTCSEEEECS
T ss_pred HCCCEEEEEeeC-cHhHHHHhhhhhcCCCEEEEcC----CCCccHHHHhhhcc---c-cccHHHHhhhcCeeeeec
Confidence 679999999974 3444444444445788876543 33344567788874 3 347899999999999974
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.40 E-value=0.45 Score=35.47 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=42.7
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHH---HHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEK---ARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~---~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .++|..+++..+...| -++++.--.+-....+.++. ....+ ..++..+.| .++++++|+++...
T Consensus 1 mKI~IIG-aG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvita 77 (142)
T d1guza1 1 MKITVIG-AGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITA 77 (142)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEE
Confidence 5899999 5889988887776655 37777753321111111111 11111 234554555 67899999998874
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=90.99 E-value=0.21 Score=38.02 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHhc---CC----cEEEEeCCCCCCCCHHHHHH----HHHh---CCCeEEEEcCHHHHhCC
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASV---IP----FHFVCACPKGFEPDKETVEK----ARKA---GISKIEITNDPKEVVQG 172 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~---~g----~~~~~~~P~~~~~~~~~~~~----~~~~---g~~~i~~~~d~~~a~~~ 172 (261)
-.||+++|-.++|..+++..+.. ++ ..+.+.-.+. ..+..+. .... ....+..+.+.++++++
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ---AMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG---GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc---chhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 36999999878999998876654 33 2222221111 1111111 1111 12457778889999999
Q ss_pred CCEEEEec-ccCcchhHHHH---HHHhhhcCCcccHHHHHhcCCCcEEe
Q 024871 173 ADVVYSDV-WASMGQKEEAA---YRKQAFQGFQVDEFLMKLAGPKAYFM 217 (261)
Q Consensus 173 aDviy~~~-w~~~~~~~~~~---~~~~~~~~y~v~~~~~~~a~~~~~~m 217 (261)
+|||+.+. -.+....+|.+ ...+.+ -.+-+++.+.++++++++
T Consensus 81 advViitaG~~~~pg~~r~dl~~~N~~i~--~~~~~~i~k~a~~~~~vi 127 (154)
T d1y7ta1 81 ADYALLVGAAPRKAGMERRDLLQVNGKIF--TEQGRALAEVAKKDVKVL 127 (154)
T ss_dssp CSEEEECCCCCCCTTCCHHHHHHHHHHHH--HHHHHHHHHHSCTTCEEE
T ss_pred ccEEEeecCcCCCCCCcHHHHHHHHHHHH--HHHHHHHHHhCCCCcEEE
Confidence 99988864 11111112211 111111 124555555577788764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.90 E-value=0.55 Score=36.86 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=47.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC-------------CCCC-HHHHHHHHHhCCCeEEEEcCHHHHhCCC
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG-------------FEPD-KETVEKARKAGISKIEITNDPKEVVQGA 173 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~-------------~~~~-~~~~~~~~~~g~~~i~~~~d~~~a~~~a 173 (261)
.||+++| .+.|.-+++..++.-|.+|+..-... +++. .+.+...... .++..++|.+++++++
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~--~~~~~~~~~~~~i~~~ 77 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT--GRLSGTTDFKKAVLDS 77 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT--TCEEEESCHHHHHHTC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc--cccccCCCHHHHHhhC
Confidence 4799998 57888888888888898887654311 1111 1112222222 4678899999999999
Q ss_pred CEEEEec
Q 024871 174 DVVYSDV 180 (261)
Q Consensus 174 Dviy~~~ 180 (261)
|+++...
T Consensus 78 d~i~i~V 84 (202)
T d1mv8a2 78 DVSFICV 84 (202)
T ss_dssp SEEEECC
T ss_pred CEEEEec
Confidence 9998753
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=90.76 E-value=0.52 Score=36.01 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=40.7
Q ss_pred cEEEEEcCCC-chHHHHHHHH---hcC-CcEEEEeCCCCCCCCHHHHHHH----HH--hCCCeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGN-NIVHSWLLMA---SVI-PFHFVCACPKGFEPDKETVEKA----RK--AGISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~-~v~~S~~~~~---~~~-g~~~~~~~P~~~~~~~~~~~~~----~~--~g~~~i~~~~d~~~a~~~aDvi 176 (261)
.||+++|.++ .+......++ ..+ .-++++.-. +++..+.. +. .....+..+.+.+++++|||+|
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Di-----d~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvV 75 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDI-----DEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYV 75 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECS-----CHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEec-----CcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEE
Confidence 4899999864 2333332222 223 347777643 33322211 11 1225678889999999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
..+-
T Consensus 76 Vita 79 (162)
T d1up7a1 76 IFQF 79 (162)
T ss_dssp EECC
T ss_pred EEec
Confidence 9974
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=90.27 E-value=0.66 Score=36.30 Aligned_cols=68 Identities=18% Similarity=0.167 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC-----------CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG-----------ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g-----------~~~i~~~~d~~~a~~~aDv 175 (261)
-.||+++|. ++....++..++.-|-++.+.+. +++.++..++.+ ..++..++|++++++++|+
T Consensus 7 m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r-----~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ 80 (189)
T d1n1ea2 7 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHM-----NEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEI 80 (189)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHTTEEEEEEECS-----CHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSC
T ss_pred eceEEEECC-CHHHHHHHHHHHHcCCeEEEEEe-----cHHHHHHHhhcccccccccccccccccccchhhhhccCCCCE
Confidence 368999996 66777777777777778877653 455555554321 1468899999999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+.-.
T Consensus 81 iiiav 85 (189)
T d1n1ea2 81 ILFVI 85 (189)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 98853
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=90.05 E-value=0.88 Score=33.96 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=41.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
.||+++|- ++|..+++..+..-+ -+++++--..-....+.+|...... ..+..++..-.++++++|+|....
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvita 76 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTA 76 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence 58999995 888887776655544 3788776433233333333322111 123444444467899999988863
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.04 E-value=0.41 Score=35.95 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=41.3
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHH-----HHHHHH---hC-CCeEEEEcCHHHHhCCCCEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKET-----VEKARK---AG-ISKIEITNDPKEVVQGADVV 176 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~-----~~~~~~---~g-~~~i~~~~d~~~a~~~aDvi 176 (261)
.||+++|- ++|..+++..+..-| -+++++- ..++. +|.... .+ ..++..+.|. ++++++|+|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~D-----i~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVD-----IAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEII 73 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEEC-----SSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEe-----cccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEE
Confidence 48999994 888888777655444 3677663 23332 221111 11 2356667774 689999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+.+.
T Consensus 74 vita 77 (142)
T d1ojua1 74 VVTA 77 (142)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.88 E-value=0.41 Score=37.87 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEE----------------------
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEI---------------------- 162 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~---------------------- 162 (261)
...-+|+++|. +.+.-.-+..+..+|..++..-- .++.++++++.+...+..
T Consensus 27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~-----~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~ 100 (183)
T d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDV-----RAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEF 100 (183)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-----CSTTHHHHHHTTCEECCC----------------------
T ss_pred cCCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEec-----cHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHH
Confidence 45568999996 55666667778889998876632 222334455554222210
Q ss_pred ----EcCHHHHhCCCCEEEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEee
Q 024871 163 ----TNDPKEVVQGADVVYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMH 218 (261)
Q Consensus 163 ----~~d~~~a~~~aDviy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH 218 (261)
.+.+.+.++++|+|++..-.. | ...|.-|++++++..|+..+|.-
T Consensus 101 ~~~~~~~l~~~l~~aDlVI~talip-G----------~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 101 RKKQAEAVLKELVKTDIAITTALIP-G----------KPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp -CCHHHHHHHHHTTCSEEEECCCCT-T----------SCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHHHHhhhhheeeeecC-C----------cccceeehHHHHHhcCCCcEEEE
Confidence 011345689999999986322 2 23578899999999999888664
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.65 E-value=0.7 Score=35.83 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHh-CCCe--EEEE--c
Q 024871 91 IMADALTIIEHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKA-GISK--IEIT--N 164 (261)
Q Consensus 91 ~L~Dl~Ti~e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~-g~~~--i~~~--~ 164 (261)
+..=++-+.++.| +|+|+++.+.|-.+.+....+..+...|.++++++=.. +--++..+...+. .... ..++ +
T Consensus 6 ~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 84 (191)
T d1luaa1 6 AAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL-DKAQAAADSVNKRFKVNVTAAETADDA 84 (191)
T ss_dssp HHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH-HHHHHHHHHHHHHHTCCCEEEECCSHH
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch-HHHHHHHHHHHhccchhhhhhhcccHH
Confidence 3444566667765 79999999999888899999999999999998875321 1111222333322 2111 1112 3
Q ss_pred CHHHHhCCCCEEEEec
Q 024871 165 DPKEVVQGADVVYSDV 180 (261)
Q Consensus 165 d~~~a~~~aDviy~~~ 180 (261)
+++++++++|+|+...
T Consensus 85 ~~~~~~~~iDilin~A 100 (191)
T d1luaa1 85 SRAEAVKGAHFVFTAG 100 (191)
T ss_dssp HHHHHTTTCSEEEECC
T ss_pred HHHHHhcCcCeeeecC
Confidence 4567899999999753
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=89.38 E-value=0.74 Score=34.53 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=41.2
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHH-----HHHH---HhCCCeEEEEcCHHHHhCCCCEEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETV-----EKAR---KAGISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~-----~~~~---~~g~~~i~~~~d~~~a~~~aDviy 177 (261)
-||+++|- ++|..+.+..+..-| -+++++- ..++.. |... ..+...+..+.+ .++++++|+|+
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D-----~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~-~~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLED-----IAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVV 74 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEC-----SSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEE-----eccccchhHHHHHHhccccCCCceeecCCC-HHHhhCCcEEE
Confidence 48999995 888888776665555 3777764 223221 1111 112345555666 45799999988
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.+.
T Consensus 75 ita 77 (143)
T d1llda1 75 ITA 77 (143)
T ss_dssp ECC
T ss_pred Eec
Confidence 874
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.84 E-value=0.39 Score=36.35 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHh---cCC----cEEEEeCCCCCCCCHHHHHH-HHHhC---CCeEEEEcCHHHHhCCCCE
Q 024871 107 GTKVVYVGDGNNIVHSWLLMAS---VIP----FHFVCACPKGFEPDKETVEK-ARKAG---ISKIEITNDPKEVVQGADV 175 (261)
Q Consensus 107 ~~~i~~vGd~~~v~~S~~~~~~---~~g----~~~~~~~P~~~~~~~~~~~~-~~~~g---~~~i~~~~d~~~a~~~aDv 175 (261)
-.||+++|-.++|..+++..+. .++ .++++.--++-+-..+-++. ..... ...+..+.+.+++++++|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 4699999987889888877653 233 24444432111000000111 11111 2356778899999999999
Q ss_pred EEEec
Q 024871 176 VYSDV 180 (261)
Q Consensus 176 iy~~~ 180 (261)
|+...
T Consensus 83 VVita 87 (154)
T d5mdha1 83 AILVG 87 (154)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.80 E-value=1 Score=33.89 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=47.0
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||++|| .+++...++.-+.+-|.++.. |...++..+.+...+. ....++.++++++|+|.+-.
T Consensus 2 ~kIg~IG-lG~MG~~iA~~L~~~g~~v~~-----~d~~~~~~~~~~~~~~---~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 2 KQIAFIG-LGHMGAPMATNLLKAGYLLNV-----FDLVQSAVDGLVAAGA---SAARSARDAVQGADVVISML 65 (162)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEE-----ECSSHHHHHHHHHTTC---EECSSHHHHHTSCSEEEECC
T ss_pred CEEEEEE-EHHHHHHHHHHHHHCCCeEEE-----EECchhhhhhhhhhhc---cccchhhhhccccCeeeecc
Confidence 4899999 477777777766677888764 3455565666666652 45778999999999988853
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.76 E-value=0.083 Score=40.22 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHHHhC--C---CeEEEEcCHHHHhCCCCEEEEecc
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKARKAG--I---SKIEITNDPKEVVQGADVVYSDVW 181 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~g--~---~~i~~~~d~~~a~~~aDviy~~~w 181 (261)
||+++|-.++|..+++.++..-|. +++++-.+.- ..+.++. .+. . ..+....+..+++++||||..+..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl--~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag 77 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADL--SHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHH--TTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHH--hhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence 899999767899888888776664 6776643220 0111111 111 1 112224566789999999988754
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.62 E-value=1.2 Score=34.46 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCC---CCCCHHHHHHHHHhCCCeEE-EE-cCHHHHhCCCCEEEE
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKG---FEPDKETVEKARKAGISKIE-IT-NDPKEVVQGADVVYS 178 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~---~~~~~~~~~~~~~~g~~~i~-~~-~d~~~a~~~aDviy~ 178 (261)
+++|++++++|-.+.|..-++.++..-|..++.|.-.. +.....+. ....+...+. ++ +.+++....|||+++
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lk~~~~~aDIvIs 103 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLK--LNKHHVEDLGEYSEDLLKKCSLDSDVVIT 103 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSS--CCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccccccee--eeeeccccccccchhHHhhccccCCEEEE
Confidence 59999999999988899999888888899998775321 11100000 0000001111 11 236788889999999
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
..
T Consensus 104 av 105 (171)
T d1edza1 104 GV 105 (171)
T ss_dssp CC
T ss_pred cc
Confidence 75
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=88.49 E-value=0.9 Score=33.85 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=42.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHH---HHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKA---RKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~---~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++|- ++|..+++.++..-+ .++++.-+..-....+.++.. .-.+ ..++..+.|.+ .++++|+|+...
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvita 77 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTS 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEee
Confidence 69999994 888888766554444 377777553322222222221 0111 23566677755 689999998875
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.89 E-value=0.6 Score=36.96 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=56.4
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEE-EeC-CCC--CC-CCHHHHHHHHHhCCCeEEEEcCH-----HHHh--CCCCE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFV-CAC-PKG--FE-PDKETVEKARKAGISKIEITNDP-----KEVV--QGADV 175 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~-~~~-P~~--~~-~~~~~~~~~~~~g~~~i~~~~d~-----~~a~--~~aDv 175 (261)
.||+++|- ..+....+..+..-|.++. +++ |+. .. ...++.+.|+++|.. +....+. .+.+ .++|+
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~-~~~~~~~~~~~~~~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIP-VYAPDNVNHPLWVERIAQLSPDV 78 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCC-EECCSCCCSHHHHHHHHHTCCSE
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCc-ceecccccchhhhhhhhhhcccc
Confidence 47888886 3344444444444566654 333 432 11 123455677787753 3222221 1222 37788
Q ss_pred EEEecccCcchhHHHHHHHhhhcCCcccHHHHHhcCCCcEEeeC--CCCCCC
Q 024871 176 VYSDVWASMGQKEEAAYRKQAFQGFQVDEFLMKLAGPKAYFMHC--LPAERG 225 (261)
Q Consensus 176 iy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~~~~a~~~~~~mH~--lP~~rg 225 (261)
++.-.|. +.+.+++++..+..++=+|| ||.+||
T Consensus 79 ii~~g~~-----------------~ii~~~il~~~~~~~iN~H~slLP~yrG 113 (203)
T d2blna2 79 IFSFYYR-----------------HLIYDEILQLAPAGAFNLHGSLLPKYRG 113 (203)
T ss_dssp EEEESCC-----------------SCCCHHHHTTCTTCEEEEESSCTTTTEE
T ss_pred eeeeecc-----------------cchhcccchhhHHHHHHHhhhcchhhhh
Confidence 8887652 45788888877777888999 787764
|
| >d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: PrpR receptor domain-like family: PrpR receptor domain-like domain: Propionate catabolism operon regulatory protein PrpR species: Escherichia coli [TaxId: 562]
Probab=87.81 E-value=0.48 Score=37.42 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=61.7
Q ss_pred CHHHHHHHHhh-----hccEEEEeeCCcchHHHHhhhCCCcEEeCCCCCCChhHHHHHHHHHHHHhCCCCCcEEEEEcCC
Q 024871 42 ETRDAARVLCR-----YNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 116 (261)
Q Consensus 42 s~~Dt~~~ls~-----~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQ~L~Dl~Ti~e~~g~l~~~~i~~vGd~ 116 (261)
+++|.+..+.+ =+|+|+-|.. ...-+.++.++|||.-.-+. -|++-....... .+.||++||-
T Consensus 35 ~~e~av~~~~~~~~~~~~DviISRG~---ta~~ir~~~~iPVV~I~vs~-------~Dil~al~~a~~-~~~kiavV~~- 102 (186)
T d2pjua1 35 GFEKAVTYIRKKLANERCDAIIAAGS---NGAYLKSRLSVPVILIKPSG-------YDVLQFLAKAGK-LTSSIGVVTY- 102 (186)
T ss_dssp CHHHHHHHHHHHTTTSCCSEEEEEHH---HHHHHHTTCSSCEEEECCCH-------HHHHHHHHHTTC-TTSCEEEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCCEEEECch---HHHHHHHhCCCCEEEEcCCH-------hHHHHHHHHHHH-hCCCEEEEeC-
Confidence 45666665543 3699999944 45556678899999964322 355555555443 3679999996
Q ss_pred CchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC
Q 024871 117 NNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG 156 (261)
Q Consensus 117 ~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g 156 (261)
.|+...+-..+..+|+++.+..-....--+..++.+++.|
T Consensus 103 ~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~v~~l~~~G 142 (186)
T d2pjua1 103 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANG 142 (186)
T ss_dssp SSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CccchHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCC
Confidence 4455556666666677666654322111122344555565
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=87.51 E-value=2.1 Score=33.73 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=49.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhC-CCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQ-GADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~-~aDviy~~~ 180 (261)
+|+|+||++-| .+||...++..+...|.+++++.+ +.+.++.....|. . .. +.++.+. +|||+..-.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~-----d~~~~~~~~~~g~-~--~~-~~~~~~~~~~DI~iPcA 91 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT-----DTERVAHAVALGH-T--AV-ALEDVLSTPCDVFAPCA 91 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS-----CHHHHHHHHHTTC-E--EC-CGGGGGGCCCSEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc-----hHHHHHHHHhhcc-c--cc-Cccccccccceeeeccc
Confidence 59999999999 688999999999999999987754 4455555556663 2 22 4456554 889988743
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.73 E-value=1.3 Score=32.48 Aligned_cols=56 Identities=11% Similarity=0.120 Sum_probs=44.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC-CCCCCHHHHHHHHHhCCCeEEEE
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK-GFEPDKETVEKARKAGISKIEIT 163 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~-~~~~~~~~~~~~~~~g~~~i~~~ 163 (261)
++|++|++||. +|.+--|+.-++.+--+++++.+. .+..++...+.+++++ +|++.
T Consensus 32 frgk~V~VvGg-GdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~~--nI~v~ 88 (130)
T d1vdca2 32 FRNKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNP--KIDVI 88 (130)
T ss_dssp GTTSEEEEECC-SHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCT--TEEEE
T ss_pred hCCCEEEEEcC-chHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccCC--ceEEE
Confidence 68999999997 777777888788888899999875 4677888888888775 45543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.33 Score=33.45 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=47.7
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+++|+||+++| .+.+..|.+..+...|.++++.-........ +.+++ + ..+.+....++.+.++|.|+..+
T Consensus 2 ~~~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~---~~~~~-~-~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 2 DYQGKNVVIIG-LGLTGLSCVDFFLARGVTPRVMDTRMTPPGL---DKLPE-A-VERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp CCTTCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESSSSCTTG---GGSCT-T-SCEEESBCCHHHHHHCSEEEECT
T ss_pred CcCCCEEEEEe-ECHHHHHHHHHHHHCCCEEEEeeCCcCchhH---HHHhh-c-cceeecccchhhhccCCEEEECC
Confidence 58899999999 4678889999999999988876543222211 11222 2 23444444466788999999875
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.53 E-value=0.24 Score=37.10 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC
Q 024871 104 RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK 140 (261)
Q Consensus 104 ~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~ 140 (261)
.++|+++++||. ++++-..+..+...|+++++++|.
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 589999999997 779999999999999999999884
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.48 E-value=0.94 Score=34.41 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHhC-CCCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhCCCeEEEEcCHHHHhCCCCEEEE
Q 024871 100 EHVG-RLEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAGISKIEITNDPKEVVQGADVVYS 178 (261)
Q Consensus 100 e~~g-~l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~~i~~~~d~~~a~~~aDviy~ 178 (261)
+++| .++|++|+++|. +.+++|.+.++...|.+++++.- ..+-.+.+.+...+.+ .++..+..+....++|+|+.
T Consensus 10 ~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nR-t~~ka~~l~~~~~~~~--~~~~~~~~~~~~~~~dliIN 85 (170)
T d1nyta1 10 ERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNR-TVSRAEELAKLFAHTG--SIQALSMDELEGHEFDLIIN 85 (170)
T ss_dssp HHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS-SHHHHHHHHHHTGGGS--SEEECCSGGGTTCCCSEEEE
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccc-hHHHHHHHHHHHhhcc--cccccccccccccccceeec
Confidence 3445 699999999996 66888888888888988777642 2111112222222222 34444433334577899997
Q ss_pred ec
Q 024871 179 DV 180 (261)
Q Consensus 179 ~~ 180 (261)
.+
T Consensus 86 ~T 87 (170)
T d1nyta1 86 AT 87 (170)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=86.43 E-value=1.2 Score=32.41 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCC-CCCCCHHHHHHHHHhCCCeEEEEcC
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPFHFVCACPK-GFEPDKETVEKARKAGISKIEITND 165 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~-~~~~~~~~~~~~~~~g~~~i~~~~d 165 (261)
++|++|+.+|. ++.+--++..++.+.-+++++... .+..++...+.+++++ +|++..+
T Consensus 28 ~~gk~V~VvGg-G~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~--~I~v~~~ 86 (126)
T d1fl2a2 28 FKGKRVAVIGG-GNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLK--NVDIILN 86 (126)
T ss_dssp GBTCEEEEECC-SHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCT--TEEEESS
T ss_pred cCCceEEEEeC-CHHHHHHHHhhhccCCceEEEeccccccccccccccccccc--ceeEEcC
Confidence 78999999996 667767777777788888888764 5777888888777764 4555433
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=86.25 E-value=0.37 Score=36.42 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=39.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHHH---hCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKARK---AGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~~---~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+||+++| .++|..+++..+...| -+++++-...=....+.++.... .+......+.| .+++++||+|+...
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d-~~~l~~adiVVita 77 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND-WAALADADVVISTL 77 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC-GGGGTTCSEEEECC
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC-HHHhccccEEEEec
Confidence 7999999 5888887776655444 37777643211111111222211 12122233555 56799999998763
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=85.51 E-value=0.8 Score=34.40 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHhcCC--cEEEEeCCCCCCCCHHHHHHHH--HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 106 EGTKVVYVGDGNNIVHSWLLMASVIP--FHFVCACPKGFEPDKETVEKAR--KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 106 ~~~~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P~~~~~~~~~~~~~~--~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..||+++| .++|..+++..+...| -+++++-..+-....+.+|... .........+.|. +++++||+|....
T Consensus 4 ~~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvita 80 (146)
T d1ez4a1 4 NHQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITA 80 (146)
T ss_dssp TBCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEec
Confidence 467999999 5888888877766655 4788775322101011111110 1112344556665 4689999999874
|
| >d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: Lysine biosynthesis enzyme LysX, N-terminal domain domain: Lysine biosynthesis enzyme LysX, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=84.34 E-value=0.58 Score=32.29 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHhcCCeEEEeCCCCcCCCCCCCHHHHHHHHhhhccEEEEeeCCcchH---HHHhhhCCCcEEeC
Q 024871 10 MRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDI---LDLAKFATVPVING 81 (261)
Q Consensus 10 tRTR~SFe~A~~~LGg~~~~l~~~~s~~~kgEs~~Dt~~~ls~~~D~iv~R~~~~~~~---~~~a~~~~vPVINa 81 (261)
.=+|.=++ |+...|-.+..+++...++.-++.-.+ -.+.|+++.|.-++..- ...-+..++||+|-
T Consensus 11 ~eEk~L~~-a~~~rG~~~~~id~~~~~~~l~~~~~~-----~~~~D~Vi~R~~s~~~~~~v~~~lE~~Gv~v~Ns 79 (88)
T d1uc8a1 11 PDERMLFE-RAEALGLPYKKVYVPALPMVLGERPKE-----LEGVTVALERCVSQSRGLAAARYLTALGIPVVNR 79 (88)
T ss_dssp HHHHHHHH-HHHHHTCCEEEEEGGGCCEETTBCCGG-----GTTCCEEEECCSSHHHHHHHHHHHHHTTCCEESC
T ss_pred HHHHHHHH-HHHHCCCeEEEEehhhcEEEccCCCCc-----cCCCCEEEEeccccchHHHHHHHHHHCCCcEecc
Confidence 33455556 677779999999887655432211110 02489999998776542 33346789999993
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=84.19 E-value=1.1 Score=33.19 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=57.5
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCC-cEEEEeCCCCCCCCHHHHHHHHH-hCCCeEEEEcCHHHHhCCCCEEEEecccCcc
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIP-FHFVCACPKGFEPDKETVEKARK-AGISKIEITNDPKEVVQGADVVYSDVWASMG 185 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g-~~~~~~~P~~~~~~~~~~~~~~~-~g~~~i~~~~d~~~a~~~aDviy~~~w~~~~ 185 (261)
.||+|+|- +|+..+++..+..-| .+++++.+ .++..+.+++ .| +...++.+ +++++|+|+.-.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r-----~~~~~~~l~~~~~---~~~~~~~~-~v~~~Div~lav----- 65 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANR-----GAEKRERLEKELG---VETSATLP-ELHSDDVLILAV----- 65 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECS-----SHHHHHHHHHHTC---CEEESSCC-CCCTTSEEEECS-----
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeC-----ChhHHHHhhhhcc---cccccccc-cccccceEEEec-----
Confidence 48999996 888888877654444 67766544 3444454444 44 35566755 478899999753
Q ss_pred hhHHHHHHHhhhcC---------CcccHHHHHhc-CCCcEEeeCCCC
Q 024871 186 QKEEAAYRKQAFQG---------FQVDEFLMKLA-GPKAYFMHCLPA 222 (261)
Q Consensus 186 ~~~~~~~~~~~~~~---------y~v~~~~~~~a-~~~~~~mH~lP~ 222 (261)
.+....+..+.+.+ =+++.+.++.. ..+..+..++|-
T Consensus 66 kP~~~~~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn 112 (152)
T d1yqga2 66 KPQDMEAACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPN 112 (152)
T ss_dssp CHHHHHHHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECC
T ss_pred CHHHHHHhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeeccc
Confidence 11112222222211 23455666543 445556777774
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=83.57 E-value=1 Score=38.70 Aligned_cols=102 Identities=13% Similarity=0.248 Sum_probs=57.9
Q ss_pred CCcEEeC-----CCCCCChhHHHHHHHHH------------HHHhCCCCCcEEEEEcCCCc-hHHHHHHHHhcCCc-EEE
Q 024871 75 TVPVING-----LTDYNHPCQIMADALTI------------IEHVGRLEGTKVVYVGDGNN-IVHSWLLMASVIPF-HFV 135 (261)
Q Consensus 75 ~vPVINa-----~~~~~HPtQ~L~Dl~Ti------------~e~~g~l~~~~i~~vGd~~~-v~~S~~~~~~~~g~-~~~ 135 (261)
+.|-|+| +....+|. ++.|.-.+ .+++..-+-.+++++|-+.. ..|=.+ .+..+++ ++.
T Consensus 80 Glp~i~g~~~L~d~~TG~p~-al~d~~~LTa~RTaA~salaa~~LA~~da~~l~iiG~G~QA~~~~~a-~~~v~~i~~V~ 157 (340)
T d1x7da_ 80 NLHTVMAFGVLADVDSGYPV-LLSELTIATALRTAATSLMAAQALARPNARKMALIGNGAQSEFQALA-FHKHLGIEEIV 157 (340)
T ss_dssp TCCSEEEEEEEEETTTCCEE-EEEECHHHHHHHHHHHHHHHHHHHSCTTCCEEEEECCSTTHHHHHHH-HHHHSCCCEEE
T ss_pred CCCcceEEEEEEECCCCCEE-EEEcchhhhhhHHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHHH-HhhhcceeeeE
Confidence 4564443 34556774 55553222 13444445689999997532 333332 3356675 566
Q ss_pred EeCCCCCCCCHHHHHHHHHh-CCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 136 CACPKGFEPDKETVEKARKA-GISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 136 ~~~P~~~~~~~~~~~~~~~~-g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+..+..-. .+.+.+.+++. | -.++.++|+++++++||+|.+.+
T Consensus 158 v~~r~~~~-~~~~~~~l~~~~g-~~v~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 158 AYDTDPLA-TAKLIANLKEYSG-LTIRRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp EECSSHHH-HHHHHHHHTTCTT-CEEEECSSHHHHHTTCSEEEECC
T ss_pred EEecChHH-HHHHHHhhhhccC-CCceecCCHHHHHhcCCceeecc
Confidence 55542110 11222223332 4 46888999999999999999754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.31 E-value=1.2 Score=34.24 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=46.9
Q ss_pred cEEEEEcCCCchHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhC----------CCeEEEEcCHHHHhCCCCEEE
Q 024871 108 TKVVYVGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDKETVEKARKAG----------ISKIEITNDPKEVVQGADVVY 177 (261)
Q Consensus 108 ~~i~~vGd~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~g----------~~~i~~~~d~~~a~~~aDviy 177 (261)
.||+++|. ++..-+++..++.-|.++.+.+. ..+++..+..++.. ...+..++|++++++++|+|+
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r---~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii 76 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGT---EFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECC---GGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEe---cccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence 48999996 77777777777666778877643 12244444443321 134666889999999999998
Q ss_pred Eec
Q 024871 178 SDV 180 (261)
Q Consensus 178 ~~~ 180 (261)
.-.
T Consensus 77 ~av 79 (180)
T d1txga2 77 LGV 79 (180)
T ss_dssp ECS
T ss_pred ccc
Confidence 754
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=81.70 E-value=1.7 Score=35.23 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=43.8
Q ss_pred CCC-cEEEEEcCCCc-hHHHHHHHHh----cCCcEEEEeCCCCCCCCHHHHHHHHHhCCC--eEEEEcCHHHHhCCCCEE
Q 024871 105 LEG-TKVVYVGDGNN-IVHSWLLMAS----VIPFHFVCACPKGFEPDKETVEKARKAGIS--KIEITNDPKEVVQGADVV 176 (261)
Q Consensus 105 l~~-~~i~~vGd~~~-v~~S~~~~~~----~~g~~~~~~~P~~~~~~~~~~~~~~~~g~~--~i~~~~d~~~a~~~aDvi 176 (261)
|+| +||+++|-++. =+|++=+-=+ .-|+++++.--++ ....++|++.|.. ... .-+++||+++||+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~g----s~S~~kA~~dGf~v~~~~-v~~v~EAv~~ADiV 115 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKG----SNSFAEARAAGFSEENGT-LGDMWETISGSDLV 115 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTT----CSCHHHHHHTTCCGGGTC-EEEHHHHHHTCSEE
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCC----ChhHHHHHHcCCccCCCc-ccCHHHHHhhCCEE
Confidence 678 89999997543 4555433221 2577777653222 2234567777741 001 22578999999999
Q ss_pred EEec
Q 024871 177 YSDV 180 (261)
Q Consensus 177 y~~~ 180 (261)
+...
T Consensus 116 miLl 119 (226)
T d1qmga2 116 LLLI 119 (226)
T ss_dssp EECS
T ss_pred EEec
Confidence 9974
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=81.26 E-value=1.9 Score=32.11 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=38.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcCC--cEEEEeCC-CCCC-CCHHHHHHHHHhC-CCeEEEEcCHHHHhCCCCEEEEec
Q 024871 109 KVVYVGDGNNIVHSWLLMASVIP--FHFVCACP-KGFE-PDKETVEKARKAG-ISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 109 ~i~~vGd~~~v~~S~~~~~~~~g--~~~~~~~P-~~~~-~~~~~~~~~~~~g-~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
||+++|-.++|..+++..+..-+ -++++.-- .... ...+.++...... .....+...-.+.+++||+|..+.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvita 78 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITA 78 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEec
Confidence 89999976888888777665544 36776531 1110 0111222221111 112233333356789999998763
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| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=80.42 E-value=2 Score=32.71 Aligned_cols=75 Identities=8% Similarity=0.001 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHhcCCc--EEEEeCCCCCCCCHHHHHHHH--HhCCCeEEEEcCHHHHhCCCCEEEEec
Q 024871 105 LEGTKVVYVGDGNNIVHSWLLMASVIPF--HFVCACPKGFEPDKETVEKAR--KAGISKIEITNDPKEVVQGADVVYSDV 180 (261)
Q Consensus 105 l~~~~i~~vGd~~~v~~S~~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~--~~g~~~i~~~~d~~~a~~~aDviy~~~ 180 (261)
+...||+++| .++|..+.+..+...|. +++++--..-....+.+|... ...........+..+.++++|+|+.+.
T Consensus 18 ~~~~KV~IIG-aG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 18 VPNNKITVVG-VGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCSSEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 6678999999 58899999888877775 788774321001111122211 011122333444467899999888763
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