Citrus Sinensis ID: 025155

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFTN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEEEcccccccccEEEcccccccccccccccccccccccccccEEcEEEEEEEEEEEcccccccEEEEEEEEEEcccEEEEEEcEEEEcccEEEEEEcccEEEEEEEEEEEEEEEEEcEEEEEEEEEccccccHHHHHcccccccccccccHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccEEEEEEEEEccccccccEEEEEcccccccccccccccccccccccHHHHEcccccEEEEEEEcccccccEEEEEEEEEEccccEEEEcccEEEcccEEEEEEcccccEcccEEEEEEEEEEcccEEEEEEEEcccccccHHHccccccccccccccHHHHHcccccEEccccc
Coil and Loop (DISEMBL)
masasslkpisyslnlpnsrssssetQRLLgfkssfsshhrnlslstthqdvsrrssknnvttkafffnkpssqpdssrpannkVQELFVYEInerdrnspailklsqkpehltigdlvpftnklytgdlqkrigITAGLCVLikhepekkgdrFEAIYSFYfgdyghisvqgayLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKgvadlpqellvkpvepsptveaapaakatephaaisnftn
Flexible Loop (DISEMBL)
masasslkpisyslnlpnsrssSSETQRLLGFKSsfsshhrnlslstthqdvsrrssknnvtTKAFffnkpssqpdssrpannKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEaapaakatephaaisnftn
Low Complexity Region (SEG)
MASASSLKPIsyslnlpnsrssssETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVeaapaakatephaaISNFTN
Disordered region (IsUnstruct)
**************************************************************************************ELFVYEIN********ILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLV*****************************
Disordered Region (DISOPRED)
**************************************************************************************ELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEP******************IS****
Disordered Region (DISEMBL)
MASASSLKPISYSLNL************LLGFKSSFSSH*******************NNVTTKAFFFN************NNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEP**************PHAAISNFTN
Disordered Region (DISPRO)
*********************************************************************************NNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAAP****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9LS01	258	Allene oxide cyclase 3, c	yes	no	0.968	0.965	0.628	2e-81
Q93ZC5	254	Allene oxide cyclase 4, c	no	no	0.906	0.917	0.647	7e-80
Q9LS02	253	Allene oxide cyclase 2, c	no	no	0.949	0.964	0.585	1e-71
Q9LS03	254	Allene oxide cyclase 1, c	no	no	0.976	0.988	0.565	7e-70

>sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 192/261 (73%), Gaps = 12/261 (4%)

Query: 2   ASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---- 57
           ++A SL+ IS +     SR+  S    LLGF  SF    +NL +S+   D S RS     
Sbjct: 5   SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTS 60

Query: 58  KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGD 117
           KN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GD
Sbjct: 61  KNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117

Query: 118 LVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLT 177
           LVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLT
Sbjct: 118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177

Query: 178 YEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPT 236
           YEDT+LAVTGGSGIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL    V PS  
Sbjct: 178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237

Query: 237 VEAAPAAKATEPHAAISNFTN 257
           V+ AP AKA EP   ISNFTN
Sbjct: 238 VKPAPEAKAMEPSGVISNFTN 258

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 6

>sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1

 Score =  296 bits (759), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/241 (64%), Positives = 177/241 (73%), Gaps = 8/241 (3%)

Query: 19  SRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFN-KPSSQPDS 77
           SR+  S     LGF  SF     N  +S+    +S R+     +T  FF     SS  D 
Sbjct: 20  SRNHQSHQSTFLGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDY 75

Query: 78  SRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGIT 137
           SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGIT
Sbjct: 76  SRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGIT 133

Query: 138 AGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYG 197
           AGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YG
Sbjct: 134 AGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYG 193

Query: 198 QVKLHQIVFPYKLFYTFYLKGV-ADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFT 256
           QVKL Q+V+P KLFYTFYLKGV ADLP EL  K VEPS  V+ A  A+AT+P A I+NFT
Sbjct: 194 QVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFT 253

Query: 257 N 257
           N
Sbjct: 254 N 254

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

>sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/263 (58%), Positives = 184/263 (69%), Gaps = 19/263 (7%)

Query: 2   ASASSLKPISYSLNLPNSRSSSSETQR--LLGFKSSFSSHHRNLSLSTTHQDVSRRSS-- 57
           +SA SL+ IS  +   N+ S + +  R  LLG   SF    +NL +S+   D S  SS  
Sbjct: 3   SSAVSLQSIS--MTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFT 56

Query: 58  --KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTI 115
             KN   ++A   N     P   RP+  KVQEL VYEINE DR+SP ILK +       +
Sbjct: 57  AKKNLTASRALSQNGNIENP---RPS--KVQELSVYEINELDRHSPKILK-NAFSLMFGL 110

Query: 116 GDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAY 175
           GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG Y
Sbjct: 111 GDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPY 170

Query: 176 LTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPS 234
           LTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL   PV PS
Sbjct: 171 LTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPS 230

Query: 235 PTVEAAPAAKATEPHAAISNFTN 257
             +E AP AKA EP   ISN+TN
Sbjct: 231 KDIEPAPEAKALEPSGVISNYTN 253

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

>sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1

 Score =  263 bits (673), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/260 (56%), Positives = 180/260 (69%), Gaps = 9/260 (3%)

Query: 1   MASASSLKPISYSLNLPNSRSSSSETQR--LLGFKSSFSSHHRNLSLSTTHQDVSRRSSK 58
           MAS S++   S S+   N+ S S +  R  LLGF  SF +   + +   +    S    K
Sbjct: 1   MAS-STISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTSFTPKK 59

Query: 59  NNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDL 118
               T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDL
Sbjct: 60  KLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDL 114

Query: 119 VPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTY 178
           VPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTY
Sbjct: 115 VPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTY 174

Query: 179 EDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTV 237
           ED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+  PV PS  V
Sbjct: 175 EDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDV 234

Query: 238 EAAPAAKATEPHAAISNFTN 257
           E AP AKA +P   +SNFTN
Sbjct: 235 EPAPEAKALKPSGVVSNFTN 254

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
332739616	255	allene oxide cyclase 2 [Glycine max]	0.984	0.992	0.702	6e-93
356499711	255	PREDICTED: allene oxide cyclase 4, chlor	0.988	0.996	0.693	9e-93
359807209	255	allene oxide cyclase 4, chloroplastic-li	0.976	0.984	0.697	1e-92
255638772	255	unknown [Glycine max]	0.988	0.996	0.689	7e-92
224099329	258	predicted protein [Populus trichocarpa]	0.980	0.976	0.693	1e-89
225423899	254	PREDICTED: allene oxide cyclase 4, chlor	0.984	0.996	0.674	1e-89
357488341	252	Allene oxide cyclase [Medicago truncatul	0.980	1.0	0.673	2e-89
388506398	256	unknown [Lotus japonicus]	0.980	0.984	0.670	2e-89
255566857	259	Allene oxide cyclase 3, chloroplast prec	0.988	0.980	0.656	8e-86
76573437	252	allene oxide cyclase [Pisum sativum]	0.964	0.984	0.681	8e-86

>gi|332739616|gb|AEE99197.1| allene oxide cyclase 2 [Glycine max]

 Score =  346 bits (887), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 182/259 (70%), Positives = 204/259 (78%), Gaps = 6/259 (2%)

Query: 1   MASASSLKPISYSLNLPNSRSSSS--ETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSK 58
           MAS SSLK IS SL L +   S S   TQ+ +G     S   + L  S T Q  + R S 
Sbjct: 1   MASMSSLKMIS-SLKLSHLSCSISPLSTQKQVGSSLFQSFPTKTLKFSATPQVSTSRRST 59

Query: 59  NNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDL 118
           N  TT AFFFN      DSS+P   KVQELFVYEINERDR SPA LKLSQK  + ++GDL
Sbjct: 60  NKTTTTAFFFNNQKQHQDSSQP--TKVQELFVYEINERDRGSPAYLKLSQKQVN-SLGDL 116

Query: 119 VPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTY 178
           VPF+NK+Y+GDLQKR+GITAGLCVLI+HEPEKKGDR+EAIYSFYFGDYGHISVQGAYLTY
Sbjct: 117 VPFSNKIYSGDLQKRLGITAGLCVLIQHEPEKKGDRYEAIYSFYFGDYGHISVQGAYLTY 176

Query: 179 EDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVE 238
           +DTYLAV+GGSGIFEGVYGQVKLHQ+VFP+KLFYTFYLKGV DLP ELL KPVEPSP+VE
Sbjct: 177 QDTYLAVSGGSGIFEGVYGQVKLHQLVFPFKLFYTFYLKGVPDLPPELLGKPVEPSPSVE 236

Query: 239 AAPAAKATEPHAAISNFTN 257
            +PAA ATEPHA + NFTN
Sbjct: 237 PSPAAMATEPHACLPNFTN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499711|ref|XP_003518680.1| PREDICTED: allene oxide cyclase 4, chloroplastic-like [Glycine max]

 Score =  345 bits (885), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 179/258 (69%), Positives = 203/258 (78%), Gaps = 4/258 (1%)

Query: 1   MASASSLKPIS-YSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKN 59
           MAS SSLK IS + L+  +   S   TQ+ +G     S   + L  S T Q  + R S N
Sbjct: 1   MASMSSLKMISSFKLSHLSCSISPLSTQKQVGSSLFQSFPTKTLKFSATPQVSTSRRSTN 60

Query: 60  NVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLV 119
             TT AFFFN      DSS+P   KVQELFVYEINERDR SPA LKLSQK  + ++GDLV
Sbjct: 61  KTTTTAFFFNNQKQHQDSSQP--TKVQELFVYEINERDRGSPAYLKLSQKQVN-SLGDLV 117

Query: 120 PFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYE 179
           PF+NK+Y+GDLQKR+GITAGLCVLI+HEPEKKGDR+EAIYSFYFGDYGHISVQGAYLTY+
Sbjct: 118 PFSNKIYSGDLQKRLGITAGLCVLIQHEPEKKGDRYEAIYSFYFGDYGHISVQGAYLTYQ 177

Query: 180 DTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEA 239
           DTYLAV+GGSGIFEGVYGQVKLHQ+VFP+KLFYTFYLKGV DLP ELL KPVEPSP+VE 
Sbjct: 178 DTYLAVSGGSGIFEGVYGQVKLHQLVFPFKLFYTFYLKGVPDLPPELLGKPVEPSPSVEP 237

Query: 240 APAAKATEPHAAISNFTN 257
           +PAA ATEPHA + NFTN
Sbjct: 238 SPAAMATEPHACLPNFTN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807209|ref|NP_001241361.1| allene oxide cyclase 4, chloroplastic-like [Glycine max] gi|332739614|gb|AEE99196.1| allene oxide cyclase 1 [Glycine max]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 182/261 (69%), Positives = 206/261 (78%), Gaps = 10/261 (3%)

Query: 1   MASASSLKPISYSLNLPNSRSSSS----ETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS 56
           MAS  SLK IS SL L  SRSS S    +TQ+ +G     S   + L  S T Q  + R 
Sbjct: 1   MASMGSLKMIS-SLKL--SRSSCSISPLQTQKQVGSSLFQSFPTKTLKFSATPQVSTSRR 57

Query: 57  SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIG 116
           S N  TT AFFFN      DSS+PA  KVQELFVYEINERDR SPA L+LSQKP + ++G
Sbjct: 58  STNKTTTTAFFFNNQKQHQDSSQPA--KVQELFVYEINERDRGSPAYLRLSQKPVN-SLG 114

Query: 117 DLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYL 176
           DLVPF+NK+Y+GDLQKR+GITAGLCVLI+HEPEKKGDR+EAIYSFYFG+YGHISVQGAYL
Sbjct: 115 DLVPFSNKIYSGDLQKRLGITAGLCVLIQHEPEKKGDRYEAIYSFYFGNYGHISVQGAYL 174

Query: 177 TYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPT 236
           T++DTYLAVTGGSGIFEG  GQVKLHQ+VFP+KLFYTFYLKGV DLP ELL KPVEPSP+
Sbjct: 175 TFQDTYLAVTGGSGIFEGASGQVKLHQLVFPFKLFYTFYLKGVPDLPPELLGKPVEPSPS 234

Query: 237 VEAAPAAKATEPHAAISNFTN 257
           VE +PAA ATEPHA + NFTN
Sbjct: 235 VEPSPAAMATEPHACLPNFTN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638772|gb|ACU19690.1| unknown [Glycine max]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 178/258 (68%), Positives = 202/258 (78%), Gaps = 4/258 (1%)

Query: 1   MASASSLKPIS-YSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKN 59
           MAS SSLK IS + L+  +   S   TQ+ +G     S   + L  S T Q  + R S N
Sbjct: 1   MASMSSLKMISSFKLSHLSCSISPLSTQKQVGSSLFQSFPTKTLKFSATPQVSTSRRSTN 60

Query: 60  NVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLV 119
             TT AFFFN      DSS+P   KVQELFVYEINERDR SPA LKLSQK  + ++GDLV
Sbjct: 61  KTTTTAFFFNNQKQHQDSSQP--TKVQELFVYEINERDRGSPAYLKLSQKQVN-SLGDLV 117

Query: 120 PFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYE 179
           PF+NK+Y+GDLQKR+GITAGLCVLI+HEPEKKGDR+EAI SFYFGDYGHISVQGAYLTY+
Sbjct: 118 PFSNKIYSGDLQKRLGITAGLCVLIQHEPEKKGDRYEAICSFYFGDYGHISVQGAYLTYQ 177

Query: 180 DTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEA 239
           DTYLAV+GGSGIFEGVYGQVKLHQ+VFP+KLFYTFYLKGV DLP ELL KPVEPSP+VE 
Sbjct: 178 DTYLAVSGGSGIFEGVYGQVKLHQLVFPFKLFYTFYLKGVPDLPPELLGKPVEPSPSVEP 237

Query: 240 APAAKATEPHAAISNFTN 257
           +PAA ATEPHA + NFTN
Sbjct: 238 SPAAMATEPHACLPNFTN 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099329|ref|XP_002311440.1| predicted protein [Populus trichocarpa] gi|222851260|gb|EEE88807.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/261 (69%), Positives = 205/261 (78%), Gaps = 9/261 (3%)

Query: 1   MASASSLKPISYSLNLPNSRSSSSETQRLL-GFKSS--FSSHHRNLSLSTTHQD-VSRRS 56
           MAS SSLKP+S SL L N RS S    +   GF  S  F+  H  LS +   QD  S + 
Sbjct: 1   MASTSSLKPVS-SLKLSNPRSQSLFQSQQQLGFTHSQGFAIQHLKLSKANRDQDHFSTKR 59

Query: 57  SKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTI 115
           S  + TT+AFFFNK P S P S +P   KVQEL VYEINERDR SPA LKLSQKP++ ++
Sbjct: 60  SSGDFTTRAFFFNKKPRSPPVSPKP--TKVQELNVYEINERDRGSPAFLKLSQKPQN-SL 116

Query: 116 GDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAY 175
           GDLVPF+NKLY+GDLQKR+GIT+GLCVLI++ PEKKGDR+EA YSFYFGDYGHISVQGAY
Sbjct: 117 GDLVPFSNKLYSGDLQKRLGITSGLCVLIQNVPEKKGDRYEATYSFYFGDYGHISVQGAY 176

Query: 176 LTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSP 235
           LTYEDTYLAVTGGSGIFEGVYGQVKL Q+VFP+KLFYTFYLKG+ DLP ELL +PV PSP
Sbjct: 177 LTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIPDLPAELLGQPVTPSP 236

Query: 236 TVEAAPAAKATEPHAAISNFT 256
           +VE APAAKATEP   I NFT
Sbjct: 237 SVEPAPAAKATEPRGIIQNFT 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423899|ref|XP_002278768.1| PREDICTED: allene oxide cyclase 4, chloroplastic [Vitis vinifera] gi|297737859|emb|CBI27060.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 204/258 (79%), Gaps = 5/258 (1%)

Query: 1   MASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSR-RSSKN 59
           MAS S LKPIS SL LP+ RS   ++ +LLGF  S S   +NL  ST HQ +S  R   +
Sbjct: 1   MASTSFLKPIS-SLKLPHPRSPPFQSSKLLGFDLSNSFPTQNLKSSTAHQRLSSTRRHSS 59

Query: 60  NVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLV 119
             TT AFFFN   +      P   KVQEL+VYEINERDR+SPA LKLSQKP + ++GDLV
Sbjct: 60  ATTTTAFFFNHHKTT--PKPPTPTKVQELYVYEINERDRDSPAFLKLSQKPAN-SLGDLV 116

Query: 120 PFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYE 179
           PFTNK+YTGDL+KR+G+TAG+CVLI+H  E+KGDR+EAIYSFYFGDYGH+SVQG YLTYE
Sbjct: 117 PFTNKIYTGDLEKRLGVTAGICVLIQHVRERKGDRYEAIYSFYFGDYGHVSVQGPYLTYE 176

Query: 180 DTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEA 239
           DTYLAVTGGSGIFEGVYG+VKL QIVFP+KLFYTFYLKG+ DLP +L+ KPV PSPTVE 
Sbjct: 177 DTYLAVTGGSGIFEGVYGEVKLQQIVFPFKLFYTFYLKGIPDLPHDLMGKPVTPSPTVEP 236

Query: 240 APAAKATEPHAAISNFTN 257
           +PAAKAT PHA++ NFT 
Sbjct: 237 SPAAKATLPHASVKNFTT 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488341|ref|XP_003614458.1| Allene oxide cyclase [Medicago truncatula] gi|40644132|emb|CAC83767.1| allene oxide cyclase [Medicago truncatula] gi|217072286|gb|ACJ84503.1| unknown [Medicago truncatula] gi|355515793|gb|AES97416.1| Allene oxide cyclase [Medicago truncatula] gi|388495314|gb|AFK35723.1| unknown [Medicago truncatula]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 202/257 (78%), Gaps = 5/257 (1%)

Query: 1   MASASSLKPISYSLNLPNSRSSSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNN 60
           MAS SSLK IS SLNL  S   +       G   SF S  RN + STT Q  + + S  N
Sbjct: 1   MASMSSLKMIS-SLNLSTSPLQTQNQIVSSGLSLSFPSR-RNFNTSTTKQVSTTKRSSQN 58

Query: 61  VTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVP 120
             T A FFN      +SS+PA  KVQELFVYEINERDR SPA L+LSQK  + ++GDLVP
Sbjct: 59  TRTNALFFNNQKQHQESSKPA--KVQELFVYEINERDRGSPAYLRLSQKSVN-SLGDLVP 115

Query: 121 FTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYED 180
           F+NKLY+G+L+KR+GIT+GLC+LI++EPEKKGDR+EAIYSFYFGDYGHISVQG YLTY+D
Sbjct: 116 FSNKLYSGNLEKRLGITSGLCILIQNEPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYQD 175

Query: 181 TYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAA 240
           TYLA+TGGSGIFEGVYGQVKL Q+VFP+KLFYTFYLKGVADLP +LL KPV+PSP VE +
Sbjct: 176 TYLAITGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGVADLPADLLGKPVDPSPHVEPS 235

Query: 241 PAAKATEPHAAISNFTN 257
            AAKATEPHA++ NFTN
Sbjct: 236 TAAKATEPHASLPNFTN 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506398|gb|AFK41265.1| unknown [Lotus japonicus]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/261 (67%), Positives = 205/261 (78%), Gaps = 9/261 (3%)

Query: 1   MASASSLKPISYSLNLPNSRS---SSSETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS 57
           MAS  SLK IS SL L N  S   + ++ Q +     SF +  ++  +S + Q  S + S
Sbjct: 1   MASMGSLKMISSSLKLSNPSSIPPNQTQNQVVSSLSQSFPT--KSFKISASPQVPSTKRS 58

Query: 58  KNNVTTKAFFFNKPSSQP-DSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIG 116
             N TT AFFF+  S Q  DSSRPA  KVQEL VYEINERDR SPA L+LSQKP + ++G
Sbjct: 59  SKNTTTTAFFFSNNSKQDHDSSRPA--KVQELSVYEINERDRGSPAYLRLSQKPVN-SLG 115

Query: 117 DLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYL 176
           DLVPF+NKLY+G+L+KR+GIT GLCVLI++ PEKKGDR+EAIYSFYFGDYGHISVQGAYL
Sbjct: 116 DLVPFSNKLYSGNLEKRLGITTGLCVLIQNVPEKKGDRYEAIYSFYFGDYGHISVQGAYL 175

Query: 177 TYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPT 236
           TY+DTYLAVTGGSGIFEGVYGQVKL Q+VFP+KLFYTFYLKG+ DLP ELL KPV+PSP 
Sbjct: 176 TYQDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGIPDLPAELLGKPVDPSPD 235

Query: 237 VEAAPAAKATEPHAAISNFTN 257
           VE +PAAKATEPHA + NFTN
Sbjct: 236 VEPSPAAKATEPHATLPNFTN 256

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566857|ref|XP_002524412.1| Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis] gi|223536373|gb|EEF38023.1| Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]

 Score =  322 bits (826), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 172/262 (65%), Positives = 199/262 (75%), Gaps = 8/262 (3%)

Query: 1   MASASSLKPISYSLNLPNSRSSSS---ETQRLLGFKSSFSSHHRNLSLSTTHQDV--SRR 55
           MAS + LK +S SL   N  +S S    T++L  F S   S  +    ST+HQ+   +  
Sbjct: 1   MASTAFLKGMS-SLRFSNIVTSHSPFRSTKQLGFFHSKAFSSTQKFKNSTSHQEYFSTGT 59

Query: 56  SSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTI 115
           SS+ +  TKAFF  KP+S  +S RP   K+QEL VYEINERDR SPAILKLS+KP+ L +
Sbjct: 60  SSRKSFATKAFFSTKPASLQESPRP--TKIQELNVYEINERDRESPAILKLSKKPDQLAL 117

Query: 116 GDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAY 175
           GDLVPFTNKLY+GDL+KR+GITAGL VLIKH PEK GDR+EAIYSFYFGDYGHISVQGAY
Sbjct: 118 GDLVPFTNKLYSGDLKKRLGITAGLSVLIKHVPEKNGDRYEAIYSFYFGDYGHISVQGAY 177

Query: 176 LTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSP 235
           LTY+DTYLAVTGG+GIFEGVYGQVKLHQIVFPYKLFYTFYLKG+ DLP ELL  PV PS 
Sbjct: 178 LTYDDTYLAVTGGTGIFEGVYGQVKLHQIVFPYKLFYTFYLKGIPDLPDELLGTPVTPSL 237

Query: 236 TVEAAPAAKATEPHAAISNFTN 257
           TVE A  AKA +P   I +FT+
Sbjct: 238 TVEPASTAKAAQPSGTILHFTD 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573437|dbj|BAE45342.1| allene oxide cyclase [Pisum sativum]

 Score =  322 bits (825), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 207/261 (79%), Gaps = 13/261 (4%)

Query: 1   MASASSLKPISYSLNLPNSRSSSS-ETQRLLGFKSSFSSHH---RNLSLSTTHQDVSRRS 56
           MAS SSLK IS SL L +S S+S  +TQ+ L   SS  SH    +  ++STT Q     +
Sbjct: 1   MASMSSLKMIS-SLKLSHSTSTSPLQTQKQL--VSSSLSHSFLTKKFNISTTRQ---FST 54

Query: 57  SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIG 116
           S  N TT AFFFN       SS+P   KVQELFVYE+NER R SPA LKLSQK  + ++G
Sbjct: 55  SSKNTTTTAFFFNNQKEHQQSSKPG--KVQELFVYEMNERGRGSPAYLKLSQKSMN-SLG 111

Query: 117 DLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYL 176
           DLVPF+NKLY+G+L+KRIGITAGLC+LI+H PEKKGDR+EAIYSFYFGDYGHISVQGAYL
Sbjct: 112 DLVPFSNKLYSGNLEKRIGITAGLCILIQHVPEKKGDRYEAIYSFYFGDYGHISVQGAYL 171

Query: 177 TYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPT 236
           TY+DTYLAVTGGSGIFEGV+G+VKL QIVFP+KLFYTFYLKG+ DLP ELL  PVEPSP 
Sbjct: 172 TYQDTYLAVTGGSGIFEGVHGKVKLQQIVFPFKLFYTFYLKGIPDLPDELLGNPVEPSPN 231

Query: 237 VEAAPAAKATEPHAAISNFTN 257
           VE +PAAKAT+PHA++SNFTN
Sbjct: 232 VEPSPAAKATQPHASLSNFTN 252

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2085974	258	AOC3 "allene oxide cyclase 3"	0.968	0.965	0.590	2.9e-71
TAIR|locus:2205349	254	AOC4 "allene oxide cyclase 4"	0.863	0.874	0.643	7e-70
TAIR|locus:2086009	253	AOC2 "allene oxide cyclase 2"	0.957	0.972	0.547	4.8e-62
TAIR|locus:2085999	254	AOC1 "allene oxide cyclase 1"	0.964	0.976	0.536	1e-61

TAIR|locus:2085974 AOC3 "allene oxide cyclase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 154/261 (59%), Positives = 179/261 (68%)

Query:     2 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----S 57
             ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    S
Sbjct:     5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTS 60

Query:    58 KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGD 117
             KN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GD
Sbjct:    61 KNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGD 117

Query:   118 LVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLT 177
             LVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLT
Sbjct:   118 LVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLT 177

Query:   178 YEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPT 236
             YEDT+LAVTGGSGIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL    V PS  
Sbjct:   178 YEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKD 237

Query:   237 VXXXXXXXXXXXXXXISNFTN 257
             V              ISNFTN
Sbjct:   238 VKPAPEAKAMEPSGVISNFTN 258

GO:0009507 "chloroplast" evidence=ISM

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP;RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2205349 AOC4 "allene oxide cyclase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 148/230 (64%), Positives = 165/230 (71%)

Query:    30 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQEL 88
             LGF  SF  H  N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL
Sbjct:    31 LGFSRSF--H--NQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQEL 84

Query:    89 FVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEP 148
              VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H P
Sbjct:    85 NVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVP 144

Query:   149 EKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPY 208
             EKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL Q+V+P 
Sbjct:   145 EKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPT 204

Query:   209 KLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
             KLFYTFYLKGVA DLP EL  K VEPS  V              I+NFTN
Sbjct:   205 KLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0016853 "isomerase activity" evidence=IEA

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2086009 AOC2 "allene oxide cyclase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 143/261 (54%), Positives = 170/261 (65%)

Query:     2 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---K 58
             +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K
Sbjct:     3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAK 58

Query:    59 NNVT-TKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGD 117
              N+T ++A   N     P   RP+  KVQEL VYEINE DR+SP ILK +       +GD
Sbjct:    59 KNLTASRALSQNGNIENP---RPS--KVQELSVYEINELDRHSPKILK-NAFSLMFGLGD 112

Query:   118 LVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLT 177
             LVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLT
Sbjct:   113 LVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLT 172

Query:   178 YEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPT 236
             YED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL   PV PS  
Sbjct:   173 YEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKD 232

Query:   237 VXXXXXXXXXXXXXXISNFTN 257
             +              ISN+TN
Sbjct:   233 IEPAPEAKALEPSGVISNYTN 253

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2085999 AOC1 "allene oxide cyclase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 141/263 (53%), Positives = 173/263 (65%)

Query:     1 MASAS-SLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS-- 57
             MAS++ SL+ I                  LLGF  SF    +N  +S+     S  +S  
Sbjct:     1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSF----QNFGISSNGPGSSSPTSFT 56

Query:    58 -KNNVT-TKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTI 115
              K  +T T+A   N  +++  + RP+  KVQEL VYEIN+ DR+SP ILK +       +
Sbjct:    57 PKKKLTPTRALSQNLGNTE--NPRPS--KVQELSVYEINDLDRHSPKILK-NAFSFRFGL 111

Query:   116 GDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAY 175
             GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG Y
Sbjct:   112 GDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPY 171

Query:   176 LTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPS 234
             LTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+  PV PS
Sbjct:   172 LTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPS 231

Query:   235 PTVXXXXXXXXXXXXXXISNFTN 257
               V              +SNFTN
Sbjct:   232 KDVEPAPEAKALKPSGVVSNFTN 254


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      257       229   0.00082  113 3  11 22  0.42    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  559 (59 KB)
  Total size of DFA:  160 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.18u 0.10s 21.28t   Elapsed:  00:00:01
  Total cpu time:  21.18u 0.10s 21.28t   Elapsed:  00:00:01
  Start:  Thu May  9 18:25:41 2013   End:  Thu May  9 18:25:42 2013

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0016853 "isomerase activity" evidence=IEA

GO:0009695 "jasmonic acid biosynthetic process" evidence=TAS

GO:0046423 "allene-oxide cyclase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009269 "response to desiccation" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LS01	AOC3_ARATH	5, ., 3, ., 9, 9, ., 6	0.6283	0.9688	0.9651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.99.6	0.991
3rd Layer	5.3.99	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030294001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (250 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014710001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (520 aa)				•		•	•		0.908
	GSVIVG00021908001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (379 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PLN02343	229	PLN02343, PLN02343, allene oxide cyclase	1e-127
pfam06351	177	pfam06351, Allene_ox_cyc, Allene oxide cyclase	1e-122

>gnl|CDD|177977 PLN02343, PLN02343, allene oxide cyclase

 Score =  360 bits (926), Expect = e-127
 Identities = 152/232 (65%), Positives = 173/232 (74%), Gaps = 7/232 (3%)

Query: 27  QRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS-KNNVTTKAFFFNKPSSQPDSSRPANNKV 85
             LLGF  S S  +  +S +          +   N+T     F+  ++  ++ RP   KV
Sbjct: 4   SSLLGF--SRSFQNLGISSNGPDFSSRSSFTTSKNLTVTRALFSNKAN--ENPRPT--KV 57

Query: 86  QELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIK 145
           QEL VYEINERDR SPA LKLS+K     +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+
Sbjct: 58  QELSVYEINERDRGSPAFLKLSKKSVENALGDLVPFTNKLYTGDLKKRLGITAGLCVLIQ 117

Query: 146 HEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIV 205
           H PEKKGDR+EAIYSFYFGDYGHISVQG YLTYEDTYLA+TGGSGIFEG YGQVKLHQIV
Sbjct: 118 HVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIV 177

Query: 206 FPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFTN 257
           FP+KLFYTFYLKG+ DLP+EL   PV PSP VE AP AKA EP + I NFTN
Sbjct: 178 FPFKLFYTFYLKGIPDLPEELTGTPVPPSPDVEPAPEAKACEPSSVIPNFTN 229

Length = 229

>gnl|CDD|191500 pfam06351, Allene_ox_cyc, Allene oxide cyclase

 Score =  345 bits (888), Expect = e-122
 Identities = 146/180 (81%), Positives = 162/180 (90%), Gaps = 3/180 (1%)

Query: 76  DSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIG 135
           +SSRPA  KVQELFVYEINERDR SPA L+LSQK  + ++GDLVPF+NKLYTGDLQKR+G
Sbjct: 1   ESSRPA--KVQELFVYEINERDRGSPAYLRLSQKSVN-SLGDLVPFSNKLYTGDLQKRLG 57

Query: 136 ITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGV 195
           ITAG+C+LI+H PEKKGDR+EAIYSFYFGDYGHISVQG YLTYEDTYLAVTGGSGIFEG 
Sbjct: 58  ITAGICILIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAVTGGSGIFEGA 117

Query: 196 YGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNF 255
           YGQVKL QIVFP+KLFYTFYLKG+ DLP+ELL KPV PSP+VE +PAAKA EPHA I NF
Sbjct: 118 YGQVKLQQIVFPFKLFYTFYLKGIKDLPEELLGKPVPPSPSVEPSPAAKACEPHAVIPNF 177

This family consists of several plant specific allene oxide cyclase proteins (EC:5.3.99.6). The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
PLN02343	229	allene oxide cyclase	100.0
PF06351	176	Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR	100.0
PF03018	144	Dirigent: Dirigent-like protein; InterPro: IPR0042	98.77

>PLN02343 allene oxide cyclase

Probab=100.00  E-value=8.5e-112  Score=741.99  Aligned_cols=194  Identities=75%  Similarity=1.225  Sum_probs=190.1

Q ss_pred             CccceeEEeeCCCCCCCCCCccccceeEEEEEEecccCCCCcceEeeCCCcccccccCccccccccccccccceeceeee
Q 025155           60 NVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAG  139 (257)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~nslGDlVpFsNkLY~g~l~kRiGitaG  139 (257)
                      ..++++|+|++++.  ++++|+  |||||+|||||||||+|||||||++|+++|+|||||||+||||+|||+||||||||
T Consensus        36 ~~s~~~~~~~~~~~--~~~~p~--kvQel~VYEiNErDR~SPa~L~ls~k~~~~sLGDlVPFsNKlY~g~L~kRlGiTaG  111 (229)
T PLN02343         36 NLTVTRALFSNKAN--ENPRPT--KVQELSVYEINERDRGSPAFLKLSKKSVENALGDLVPFTNKLYTGDLKKRLGITAG  111 (229)
T ss_pred             cccceeeeeccccc--CCCCCc--eeEEEEEEEeccccCCCcceEEcccCcccccccceeccccccccchhhhhhcccce
Confidence            34578999999987  889999  99999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeccCCCCCEEEEEEEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccC
Q 025155          140 LCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV  219 (257)
Q Consensus       140 ~Cvliq~~pek~GdryEa~ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi  219 (257)
                      +|++|||+|||+||||||||||||||||||||||||+||||||||||||+||||||||||||||||||||||||||||||
T Consensus       112 ~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGpyltyeDt~LaiTGGsGiFega~GqvkL~qivfPfKlfYTFyLkGi  191 (229)
T PLN02343        112 LCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIVFPFKLFYTFYLKGI  191 (229)
T ss_pred             eEEEEEeccccCCceeEEEEEEEecCcceeEEeccccccccceEEeecCcceeecceeEEEEeeeeeeeeeEEEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCCCCCCCCccChhhhccCCccccCCCCC
Q 025155          220 ADLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFTN  257 (257)
Q Consensus       220 ~dlp~el~~~~v~ps~~vep~p~aka~~p~a~~~nft~  257 (257)
                      ||||+||+++||+|||+|||+|+|||||||++++||||
T Consensus       192 ~dLP~eL~~~~v~Ps~~Vep~p~Aka~~p~~~~~nfT~  229 (229)
T PLN02343        192 PDLPEELTGTPVPPSPDVEPAPEAKACEPSSVIPNFTN  229 (229)
T ss_pred             ccchHHHhCCCCCCCCCCCcChhHhhcCCCccccccCC
Confidence            99999999999999999999999999999999999997

>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5

Probab=100.00  E-value=1.2e-106  Score=688.87  Aligned_cols=176  Identities=83%  Similarity=1.345  Sum_probs=137.9

Q ss_pred             CCCccccceeEEEEEEecccCCCCcceEeeCCCcccccccCccccccccccccccceeceeeeeEEEEeeccCCCCCEEE
Q 025155           77 SSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFE  156 (257)
Q Consensus        77 ~~~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~pek~GdryE  156 (257)
                      +++|+  |||||+|||||||||+||||||||||++ |+|||||||+||||+||||+|||||+|+|++|||+|||+|||||
T Consensus         1 ~~~p~--kvqel~vyeiNErdR~SPa~L~ls~k~~-nslGDlvpFsNklY~g~l~~rlGitaG~Cvliq~~p~k~GdryE   77 (176)
T PF06351_consen    1 SSRPT--KVQELSVYEINERDRGSPAYLRLSQKSV-NSLGDLVPFSNKLYDGDLQKRLGITAGICVLIQHVPEKKGDRYE   77 (176)
T ss_dssp             ---------EEEEEEEE--S-S--S--B--SSSSS-S-TT-EEEEEEEEEETTSS-EEEEEEEEEEEEEEECCCTEEEEE
T ss_pred             CCCcc--ceEEEEEEEEcccccCCCcEEEcccccc-hhcccccccccccccchhhhhhcccceEEEEEEeccccCCceEE
Confidence            46788  9999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCCCChhhhhcCCCCCCCC
Q 025155          157 AIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPT  236 (257)
Q Consensus       157 a~ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~dlp~el~~~~v~ps~~  236 (257)
                      |+|||||||||||||||||+|||||||||||||||||||||||||||||||||||||||||||||||+||+++||+|||+
T Consensus        78 aiySfyfGdyGhISvqGpy~t~eDtyLAVTGGtGiF~g~~GqVkL~qivfPfKlfYTFylkGi~dLP~el~~~~v~Ps~~  157 (176)
T PF06351_consen   78 AIYSFYFGDYGHISVQGPYLTYEDTYLAVTGGTGIFEGVYGQVKLHQIVFPFKLFYTFYLKGIPDLPEELLGKPVEPSPA  157 (176)
T ss_dssp             EEEEEE-GGGEEEEEEEEEETTS-EEEEEEEEEETTTT-EEEEEEEEEETTTEEEEEEEEES-S---GGGHS-----STT
T ss_pred             EEEEEEecccceEEEecccccccceeEEEeccCceeecceEEEEEEEeecceEEEEEEEecccccccHHHhCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccChhhhccCCccccCCC
Q 025155          237 VEAAPAAKATEPHAAISNF  255 (257)
Q Consensus       237 vep~p~aka~~p~a~~~nf  255 (257)
                      |||+|+||||||||+++||
T Consensus       158 vep~p~Aka~~p~a~~~nf  176 (176)
T PF06351_consen  158 VEPSPAAKACEPHAVIPNF  176 (176)
T ss_dssp             ----HHHHCT-GGGB-TT-
T ss_pred             CCcChHHhhcCCcccccCC
Confidence            9999999999999999998

3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.

>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants

Probab=98.77  E-value=1.8e-07  Score=76.98  Aligned_cols=87  Identities=30%  Similarity=0.411  Sum_probs=76.2

Q ss_pred             cccCccccccccccccc--cceeceeeeeEEEEeeccCCCCCEEEEEEEEEeecC---c-eEEEeceec-cccccEEEEe
Q 025155          114 TIGDLVPFTNKLYTGDL--QKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDY---G-HISVQGAYL-TYEDTYLAVT  186 (257)
Q Consensus       114 slGDlVpFsNkLY~g~l--~kRiGitaG~Cvliq~~pek~GdryEa~ySfyFGDy---G-hISvqGpyl-t~eDtyLAVT  186 (257)
                      ..|+++-|.++|++|-.  -+.||--+|+.+.-    ...|..+-..+++.|-+.   | +|+|+|... .-+..-+||+
T Consensus        33 ~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~----s~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~e~~VV  108 (144)
T PF03018_consen   33 GFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSA----SLDGSSWFMSFTLVFEDGEYNGSTLSVMGRDPFFEPVRELAVV  108 (144)
T ss_pred             CCcEEEEEeeceEcCCCCCCccceEEEEEEEee----cccCccEEEEEEEEEEecccCCCeEEEeCCCcccCcccEEeEe
Confidence            78999999999998854  78999999999996    456788999999999772   6 899999985 4466799999


Q ss_pred             ccceeeeeeeeEEEEEEe
Q 025155          187 GGSGIFEGVYGQVKLHQI  204 (257)
Q Consensus       187 GGTGiFeGa~GqVkL~qi  204 (257)
                      ||||-|+.|+|.+++..+
T Consensus       109 GGTG~Fr~ArG~~~~~~~  126 (144)
T PF03018_consen  109 GGTGEFRMARGYAKLRTV  126 (144)
T ss_pred             cCCCeEcceEEEEEEEEE
Confidence            999999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
1zvc_A	189	X-Ray Structure Of Allene Oxide Cyclase From Arabid		6e-63
1z8k_A	193	X-ray Structure Of Allene Oxide Cyclase From Arabid		2e-62
2gin_A	188	X-Ray Structure Of The Wt Allene Oxide Cyclase 2 Fr		5e-62
2dio_A	188	Crystal Structure Of The Allene Oxide Cyclase 2 Wit		6e-62
2brj_A	188	X-Ray Structure Of The Allene Oxide Cyclase From Ar		6e-62
4h6b_A	195	Structural Basis For Allene Oxide Cyclization In Mo		3e-59
4h69_A	194	Crystal Structure Of The Allene Oxide Cyclase 2 Fro		1e-57

>pdb|1ZVC|A Chain A, X-Ray Structure Of Allene Oxide Cyclase From Arabidopsis Thaliana At3g25760 Length = 189

Iteration: 1
 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 119/183 (65%), Positives = 140/183 (76%), Gaps = 2/183 (1%)
Query: 76  DSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIG 135
           ++  P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+G
Sbjct: 8   NTENPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVG 66
Query: 136 ITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGV 195
           ITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG 
Sbjct: 67  ITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGA 126
Query: 196 YGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISN 254
           YGQVKL Q+V+P KLFYTFYLKG+A DLP EL+  PV PS  V              +SN
Sbjct: 127 YGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSN 186
Query: 255 FTN 257
           FTN
Sbjct: 187 FTN 189

>pdb|1Z8K|A Chain A, X-ray Structure Of Allene Oxide Cyclase From Arabidopsis Thaliana At3g25770 Length = 193

Iteration: 1
 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 138/179 (77%), Gaps = 2/179 (1%)
Query: 80  PANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAG 139
           P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAG
Sbjct: 16  PRPSKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAG 74
Query: 140 LCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQV 199
           LCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQV
Sbjct: 75  LCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQV 134
Query: 200 KLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
           KL Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +              ISN+TN
Sbjct: 135 KLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 193

>pdb|2GIN|A Chain A, X-Ray Structure Of The Wt Allene Oxide Cyclase 2 From Arabidopsis Thaliana Length = 188

Iteration: 1
 Score =  233 bits (595), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83  NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
           +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14  SKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
           +I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL 
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
           Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +              ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|2DIO|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 With Bound Inhibitor Vernolic Acid Length = 188

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83  NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
           +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14  SKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
           +I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL 
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
           Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +              ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|2BRJ|A Chain A, X-Ray Structure Of The Allene Oxide Cyclase From Arabidopsis Thaliana Length = 188

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 137/176 (77%), Gaps = 2/176 (1%)
Query: 83  NKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCV 142
           +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV
Sbjct: 14  SKVQELSVYEINELDRHSPKILK-NAFSLXFGLGDLVPFTNKLYTGDLKKRVGITAGLCV 72
Query: 143 LIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLH 202
           +I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL 
Sbjct: 73  VIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQ 132
Query: 203 QIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
           Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +              ISN+TN
Sbjct: 133 QLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 188

>pdb|4H6B|A Chain A, Structural Basis For Allene Oxide Cyclization In Moss Length = 195

Iteration: 1
 Score =  224 bits (572), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/178 (60%), Positives = 126/178 (70%), Gaps = 6/178 (3%)
Query: 85  VQELFVYEINERDRNSPAILKLSQKPEHLT------IGDLVPFTNKLYTGDLQKRIGITA 138
           VQELFVYEINERDR SP  L    K +  T      +GDLVPF+NK+Y G L+ R+GITA
Sbjct: 17  VQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITA 76
Query: 139 GLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQ 198
           GLC LI H  +K GDR+EA+YSFYFGDYGHISVQG Y+TYED+YLA+TGGSGIF G YGQ
Sbjct: 77  GLCTLISHSDQKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQ 136
Query: 199 VKLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFT 256
            KLHQI+FP+KLFYTFYL+G+  LP+ L    V PSP+V                NFT
Sbjct: 137 AKLHQIIFPFKLFYTFYLQGIKKLPEALCAPCVPPSPSVAPADEAKQCLPNHVAPNFT 194

>pdb|4H69|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From Physcomitrella Patens Complexed With Substrate Analog Length = 194

Iteration: 1
 Score =  219 bits (558), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/178 (60%), Positives = 124/178 (69%), Gaps = 5/178 (2%)
Query: 85  VQELFVYEINERDRNSPAILKLSQKPEHL-----TIGDLVPFTNKLYTGDLQKRIGITAG 139
           VQEL VYEINERDR SP IL    K +       ++GDLVPF+NK+Y G LQ+R+GITAG
Sbjct: 17  VQELSVYEINERDRGSPVILPFGGKKDENGAHANSLGDLVPFSNKVYDGSLQRRLGITAG 76
Query: 140 LCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQV 199
           +C LI H  EKKGDR+EA YSFYFGDYGHISVQG Y+TYEDT L VTGG+GIF G +G  
Sbjct: 77  ICTLISHNAEKKGDRYEAQYSFYFGDYGHISVQGPYITYEDTELVVTGGTGIFAGCHGVA 136
Query: 200 KLHQIVFPYKLFYTFYLKGVADLPQELLVKPVEPSPTVXXXXXXXXXXXXXXISNFTN 257
           KLHQI+FP KLFYTFYL+G+  LP+EL    V PSP+                 NFTN
Sbjct: 137 KLHQIIFPVKLFYTFYLQGIKKLPEELCASVVPPSPSAEPSEQAKKCHPSSVAPNFTN 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	2e-92

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A Length = 188

 Score =  269 bits (689), Expect = 2e-92
 Identities = 128/189 (67%), Positives = 148/189 (78%), Gaps = 3/189 (1%)

Query: 70  KPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGD 129
           + S      R  + KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGD
Sbjct: 2   RGSHHHHHHRSPS-KVQELSVYEINELDRHSPKILKNAFSLMF-GLGDLVPFTNKLYTGD 59

Query: 130 LQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGS 189
           L+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+
Sbjct: 60  LKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGA 119

Query: 190 GIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVEAAPAAKATEP 248
           GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP EL   PV PS  +E AP AKA EP
Sbjct: 120 GIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEP 179

Query: 249 HAAISNFTN 257
              ISN+TN
Sbjct: 180 SGVISNYTN 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4h6b_A	195	Allene oxide cyclase; B-barrel, oxylipins, fatty a	100.0
2brj_A	188	Arabidopsis thaliana genomic DNA, chromosome 3, TA	100.0

>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*

Probab=100.00  E-value=3.7e-101  Score=663.35  Aligned_cols=181  Identities=62%  Similarity=1.107  Sum_probs=171.6

Q ss_pred             CCCCCccccceeEEEEEEecccCCCCcceEeeCCCccc------ccccCccccccccccccccceeceeeeeEEEEeecc
Q 025155           75 PDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEH------LTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEP  148 (257)
Q Consensus        75 ~~~~~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~------nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~p  148 (257)
                      +++++|+  |||||+|||||||||+||||||||||..+      |+|||||||+|||||++|++|||||+|+|++|||+|
T Consensus         9 ~~~~~p~--~vqel~VyEiNE~dr~sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l~~RiGitaG~Cv~i~~~~   86 (195)
T 4h6b_A            9 ARGASPG--HVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKTRLGITAGLCTLISHSD   86 (195)
T ss_dssp             ---------CCEEEEEEEECCSCSCCCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTSCCEEEEEEEEEEEEEEET
T ss_pred             ccCCCCc--eeEEEEEEEecccccCCcceeecccccCccccccccccccccccccccccccccccccccccEEEEEeecC
Confidence            3688999  99999999999999999999999999832      899999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCCCChhhhhc
Q 025155          149 EKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVADLPQELLV  228 (257)
Q Consensus       149 ek~GdryEa~ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~dlp~el~~  228 (257)
                      ||+||||||+|||||||||||+|||||+||||+|||||||||||+||+|||||||||||||||||||||||||||+||++
T Consensus        87 ~k~GdryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~pfklfytfyl~gi~~lp~~l~~  166 (195)
T 4h6b_A           87 QKNGDRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIFPFKLFYTFYLQGIKKLPEALCA  166 (195)
T ss_dssp             TTTEEEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEETTTEEEEEEEEESSCCCCGGGCS
T ss_pred             CCCCceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeeeeeeEEEEEEecccccchHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccChhhhccCCccccCCCCC
Q 025155          229 KPVEPSPTVEAAPAAKATEPHAAISNFTN  257 (257)
Q Consensus       229 ~~v~ps~~vep~p~aka~~p~a~~~nft~  257 (257)
                      +||+|+|+|||+|+|||||||++++|||.
T Consensus       167 ~~v~p~~~vep~~~ak~~~p~~~~~nft~  195 (195)
T 4h6b_A          167 PCVPPSPSVAPADEAKQCLPNHVAPNFTK  195 (195)
T ss_dssp             CCCCCCTTCCCCHHHHTTCTTSBCTTCCC
T ss_pred             CCCCCCCCCCcChhHhhcCCccccccccC
Confidence            99999999999999999999999999995

>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A

Probab=100.00  E-value=2.1e-97  Score=637.60  Aligned_cols=176  Identities=72%  Similarity=1.185  Sum_probs=172.3

Q ss_pred             CccccceeEEEEEEecccCCCCcceEeeCCCcccccccCccccccccccccccceeceeeeeEEEEeeccCCCCCEEEEE
Q 025155           79 RPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAI  158 (257)
Q Consensus        79 ~p~~~kvqel~vyeiNE~dr~SPa~L~ls~k~~~nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~pek~GdryEa~  158 (257)
                      .|+  |||||+|||||||||+||||||||||++ |++||||||+|||||||+++|||||+|+|++|||+|+++||||||+
T Consensus        12 ~~~--~vq~l~vye~NE~dr~sPa~L~l~~k~~-~slGDlvpFsNkLydg~l~~rvG~taG~Cv~~~~~p~~~gdryE~t   88 (188)
T 2brj_A           12 SPS--KVQELSVYEINELDRHSPKILKNAFSLM-FGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEAT   88 (188)
T ss_dssp             -----CCEEEEEEEECCSCSCCCCCBCCCSSSS-SCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEE
T ss_pred             Ccc--ceEEEEEEEecccccCCCceEEcccccC-cCcccEEeecccccccccceeccccceEEEEEEecCCCCCcEEEEE
Confidence            467  9999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCC-CChhhhhcCCCCCCCCC
Q 025155          159 YSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTV  237 (257)
Q Consensus       159 ySfyFGDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~-dlp~el~~~~v~ps~~v  237 (257)
                      |||||||||||||||||+||||+|||||||||||+|||||||||||+||||+|||||||||| |||+||+++||+|||+|
T Consensus        89 yS~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P~k~~yTf~L~gi~~~lp~~l~~~~v~p~~~v  168 (188)
T 2brj_A           89 YSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDI  168 (188)
T ss_dssp             EEEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTC
T ss_pred             EEEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccCceEEEEEEEecCcccCcHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             ccChhhhccCCccccCCCCC
Q 025155          238 EAAPAAKATEPHAAISNFTN  257 (257)
Q Consensus       238 ep~p~aka~~p~a~~~nft~  257 (257)
                      ||+|+||||||+++++||||
T Consensus       169 ep~~~a~~~~p~~~~~n~t~  188 (188)
T 2brj_A          169 EPAPEAKALEPSGVISNYTN  188 (188)
T ss_dssp             CCCHHHHTTCGGGBCTTCCC
T ss_pred             CcChHHhhcCCcccccccCC
Confidence            99999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d2brja1	174	b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Th	1e-109

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]} Length = 174

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

 Score =  311 bits (797), Expect = e-109
 Identities = 126/175 (72%), Positives = 144/175 (82%), Gaps = 2/175 (1%)

Query: 84  KVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVL 143
           KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+
Sbjct: 1   KVQELSVYEINELDRHSPKILKNAFSLMF-GLGDLVPFTNKLYTGDLKKRVGITAGLCVV 59

Query: 144 IKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQ 203
           I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q
Sbjct: 60  IEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQ 119

Query: 204 IVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVEAAPAAKATEPHAAISNFTN 257
           +V+P KLFYTFYLKG+A DLP EL   PV PS  +E AP AKA EP   ISN+TN
Sbjct: 120 LVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d2brja1	174	Allene oxide cyclase, AOC {Thale cress (Arabidopsi	100.0

>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}

class: All beta proteins
fold: AOC barrel-like
superfamily: Allene oxide cyclase-like
family: Allene oxide cyclase-like
domain: Allene oxide cyclase, AOC
species: Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]

Probab=100.00  E-value=4.1e-106  Score=681.58  Aligned_cols=173  Identities=73%  Similarity=1.189  Sum_probs=172.0

Q ss_pred             ceeEEEEEEecccCCCCcceEeeCCCcccccccCccccccccccccccceeceeeeeEEEEeeccCCCCCEEEEEEEEEe
Q 025155           84 KVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYF  163 (257)
Q Consensus        84 kvqel~vyeiNE~dr~SPa~L~ls~k~~~nslGDlVpFsNkLY~g~l~kRiGitaG~Cvliq~~pek~GdryEa~ySfyF  163 (257)
                      |||||+|||||||||+||||||++++++ |+|||||||+||||+|||+||||||+|+|++|||+|||+||||||||||||
T Consensus         1 kvqel~VYEiNErdR~SPa~L~~s~~~~-n~lGDlVpFsNkly~g~l~kRlGitaG~C~liq~~pek~gdryEa~ySfyf   79 (174)
T d2brja1           1 KVQELSVYEINELDRHSPKILKNAFSLM-FGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYF   79 (174)
T ss_dssp             CCEEEEEEEECCSCSCCCCCBCCCSSSS-SCTTCEEEECCEEEETTSSCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEEC
T ss_pred             CceEEEEEEeccccCCCchheecccccc-ccccccccccchhcccchhhhccceeeEEEEEEecCCcCcceeEEEEEEEe
Confidence            7999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceEEEeceeccccccEEEEeccceeeeeeeeEEEEEEeeeceeEEEEEEeccCC-CChhhhhcCCCCCCCCCccChh
Q 025155          164 GDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLPQELLVKPVEPSPTVEAAPA  242 (257)
Q Consensus       164 GDyGhISvqGpylt~eDtyLAVTGGTGiFeGa~GqVkL~qivfPfklfYtFyLkgi~-dlp~el~~~~v~ps~~vep~p~  242 (257)
                      ||||||||||||+|||||||||||||||||||||||||||||||||||||||||||| |||+||+++||+|||+|||+|+
T Consensus        80 GDyGhISvqGpyltyeDtylaiTGGsGiFeGa~GqVkL~qivfPfKlfYTFyLkGip~dLP~~L~~~~v~Ps~~vep~~~  159 (174)
T d2brja1          80 GDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPE  159 (174)
T ss_dssp             GGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETTTEEEEEEEEECCSSCCCGGGCSCCCCCCTTCCCCHH
T ss_pred             cCcccEEEeccccccccceeeeecccceeecceeEEEEeeeeeeeeEEEEEEEccCcccChHHHhCCCCCCCCCCCcChH
Confidence            999999999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             hhccCCccccCCCCC
Q 025155          243 AKATEPHAAISNFTN  257 (257)
Q Consensus       243 aka~~p~a~~~nft~  257 (257)
                      |||||||++++||||
T Consensus       160 Aka~~p~~~~~nfT~  174 (174)
T d2brja1         160 AKALEPSGVISNYTN  174 (174)
T ss_dssp             HHTTCGGGBCTTCCC
T ss_pred             HhccCCcccccccCC
Confidence            999999999999997