Citrus Sinensis ID: 025266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKKD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
maehapehessdkSLVEKITdkihghdssssdsdddkpssidAFKSKVFRlfgrekpihhvlgagkpadIFLWRnkkisagvLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWsnastfinksppeipvvtlpeKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRipkgalkkkd
Flexible Loop (DISEMBL)
maehapehessdksLVEKITDKIhghdssssdsdddkpssIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKkvlsripkgalkkkd
Low Complexity Region (SEG)
MAEHAPEHESSDKSLVEKITdkihghdssssdsdddkpssidAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKKD
Disordered region (IsUnstruct)
*******************************************FKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSR**********
Disordered Region (DISOPRED)
***************************************************************AGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLS****G******
Disordered Region (DISEMBL)
*************SLVEKITDKI***************SSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKKD
Disordered Region (DISPRO)
*********************************************SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPK*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9SH59	255	Reticulon-like protein B3	yes	no	0.980	0.980	0.666	2e-86
O82352	255	Reticulon-like protein B5	no	no	0.980	0.980	0.607	2e-84
Q9FFS0	257	Reticulon-like protein B4	no	no	0.972	0.964	0.624	3e-83
Q9SUR3	275	Reticulon-like protein B1	no	no	0.796	0.738	0.690	8e-80
Q9SUT9	271	Reticulon-like protein B2	no	no	0.933	0.878	0.602	7e-78
Q6DBN4	253	Reticulon-like protein B6	no	no	0.980	0.988	0.596	2e-77
Q9SS37	247	Reticulon-like protein B8	no	no	0.909	0.939	0.444	4e-56
Q9M145	244	Reticulon-like protein B7	no	no	0.8	0.836	0.512	3e-54
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.847	0.96	0.411	7e-44
Q6NPD8	201	Reticulon-like protein B1	no	no	0.764	0.970	0.366	2e-33

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  318 bits (815), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/255 (66%), Positives = 202/255 (79%), Gaps = 5/255 (1%)

Query: 5   APEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDA-FKSKVFRLFGREKPIHHVLG 63
           A EH+  ++S++EKI++KIHGHD SSS S D       A  K+K++RLFGRE+P+H + G
Sbjct: 2   AEEHKH-EESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFG 60

Query: 64  AGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNAST 123
            GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+AST
Sbjct: 61  GGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAST 120

Query: 124 FINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLS 183
           FI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS
Sbjct: 121 FIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLS 180

Query: 184 IVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVL 243
            VG+ CNF+TL YI  VLL T+PV+YEKYEDK+D FGEKA  EIKKQY  FD KVL KV+
Sbjct: 181 KVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVM 240

Query: 244 SRIPKGA---LKKKD 255
           S+IPKGA   +KKKD
Sbjct: 241 SKIPKGAFAFIKKKD 255

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  311 bits (798), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/255 (60%), Positives = 201/255 (78%), Gaps = 5/255 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDD-DKPSSIDAFKSKVFRLFGREKPIH 59
           MAE   +   +++SL+EKI++KIH HDSSSS   + +KP S  A K+K++R+FGREKP+H
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVH 60

Query: 60  HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
            VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWS
Sbjct: 61  KVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWS 120

Query: 120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
           NA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GL
Sbjct: 121 NAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGL 180

Query: 180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
           W++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDE   
Sbjct: 181 WIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDE--- 237

Query: 240 KKVLSRIPKGALKKK 254
            KVLS+IP  +LK K
Sbjct: 238 -KVLSKIPIASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/253 (62%), Positives = 193/253 (76%), Gaps = 5/253 (1%)

Query: 7   EHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSK-----VFRLFGREKPIHHV 61
           E    ++S++EKI +KIHGH  SSS SD D      +  S      ++RLFGREKP+H V
Sbjct: 3   EDHKHEESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKV 62

Query: 62  LGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNA 121
           LG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA
Sbjct: 63  LGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNA 122

Query: 122 STFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWL 181
            TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+
Sbjct: 123 CTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWV 182

Query: 182 LSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKK 241
           LSI+G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKVL+K
Sbjct: 183 LSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRK 242

Query: 242 VLSRIPKGALKKK 254
           V+S+IP+GAL KK
Sbjct: 243 VISKIPRGALNKK 255

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  296 bits (759), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 170/207 (82%), Gaps = 4/207 (1%)

Query: 48  VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHI 107
           V+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+
Sbjct: 70  VYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHV 129

Query: 108 SILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGR 167
            I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGR
Sbjct: 130 MIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGR 189

Query: 168 DLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEI 227
           DLKKFL  IAGLW+LSI+G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEKA IE+
Sbjct: 190 DLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIEL 249

Query: 228 KKQYAVFDEKVLKKVLSRIPKGALKKK 254
           KKQYAV DE    KVLS+IP G LK K
Sbjct: 250 KKQYAVLDE----KVLSKIPLGPLKNK 272

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  290 bits (742), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 191/249 (76%), Gaps = 11/249 (4%)

Query: 13  KSLVEKITDKIHGHDSSS-------SDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAG 65
           +SL+EK+++KIH    SS        +      SS  + KSKV+RLFGRE+P+H VLG G
Sbjct: 24  ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGG 83

Query: 66  KPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFI 125
           KPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI
Sbjct: 84  KPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFI 143

Query: 126 NKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIV 185
           +KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LSI+
Sbjct: 144 HKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSIL 203

Query: 186 GNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSR 245
           G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEKA  E+KKQYAV D     KV S+
Sbjct: 204 GGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLD----AKVFSK 259

Query: 246 IPKGALKKK 254
           IP+G LK K
Sbjct: 260 IPRGPLKDK 268

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  288 bits (738), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 152/255 (59%), Positives = 192/255 (75%), Gaps = 5/255 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDD-KPSSIDAFKSKVFRLFGREKPIH 59
           MAE   +    ++SL+EKI DKIH HDSSSS   +  KP S  A K+K++RLFGREKP+H
Sbjct: 1   MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVH 60

Query: 60  HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
            VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL S
Sbjct: 61  KVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLS 120

Query: 120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
           NA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GL
Sbjct: 121 NAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGL 180

Query: 180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
           W++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EK   E+KK Y VFDE   
Sbjct: 181 WIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDE--- 237

Query: 240 KKVLSRIPKGALKKK 254
            KVLS++P  +LK K
Sbjct: 238 -KVLSKLPVASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 156/243 (64%), Gaps = 11/243 (4%)

Query: 15  LVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWR 74
           LV+  T+ +  +   SS  + +     D+  S+  RLF R+KPIHHVLG GK AD+ LWR
Sbjct: 14  LVDNFTETVQKNKHGSSFFEQE-----DSVSSRFNRLFDRQKPIHHVLGGGKSADVLLWR 68

Query: 75  NKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPV 134
           NKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P 
Sbjct: 69  NKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPR 128

Query: 135 VTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTL 194
           + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+ CNF+T+
Sbjct: 129 LVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTV 188

Query: 195 FYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKG--ALK 252
            YI FV  HT+PV+YE+YED++D F +   ++    Y   D       LSRIP G   LK
Sbjct: 189 LYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLD----TGFLSRIPSGKFGLK 244

Query: 253 KKD 255
           K++
Sbjct: 245 KRE 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  211 bits (538), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/207 (51%), Positives = 147/207 (71%), Gaps = 3/207 (1%)

Query: 36  DKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFEL 95
           +KP S     + ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF  
Sbjct: 39  EKPDSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGF 98

Query: 96  LEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINR 155
               L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N 
Sbjct: 99  GGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNC 155

Query: 156 ALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDK 215
           A A LR IA  RD+K F+  + GLWL+S++GNW +F++L YI FVL+HTVP++YEKYED+
Sbjct: 156 AFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDE 215

Query: 216 IDSFGEKATIEIKKQYAVFDEKVLKKV 242
           ID   EKA IE+KK Y VF+ K L K+
Sbjct: 216 IDPIAEKAVIEMKKHYQVFEAKFLSKI 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 135/226 (59%), Gaps = 10/226 (4%)

Query: 29  SSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATA 88
           SSSDS+D++         K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + 
Sbjct: 7   SSSDSEDERTIH------KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSI 60

Query: 89  MWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASA 148
           +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +
Sbjct: 61  LWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARS 120

Query: 149 LRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVI 208
                N+ L  L ++A GRD   F      L+++SI+G + NFV L +I FV + T+PV+
Sbjct: 121 FHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVM 180

Query: 209 YEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 254
           YE YED +D+   K   ++KK Y    +KV   VLS+IP+G +K K
Sbjct: 181 YEMYEDDVDTAAGKLMRKMKKLY----KKVDTNVLSKIPRGTVKNK 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 120/202 (59%), Gaps = 7/202 (3%)

Query: 55  EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAV 114
           E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +
Sbjct: 2   EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query: 115 LFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG 174
           LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   
Sbjct: 62  LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query: 175 VIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIE---IKKQY 231
           V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID   EK ++    I+ QY
Sbjct: 122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID---EKLSLTHRVIQTQY 178

Query: 232 AVFDEKVLKKVLSRIPKGALKK 253
              DE++L+K++++ P   +KK
Sbjct: 179 RKIDERLLQKIIAK-PTNKIKK 199

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
359474299	256	PREDICTED: uncharacterized protein LOC10	0.976	0.972	0.724	1e-96
297742260	252	unnamed protein product [Vitis vinifera]	0.976	0.988	0.724	2e-96
358248944	254	uncharacterized protein LOC100811024 [Gl	0.980	0.984	0.745	3e-96
356513327	254	PREDICTED: reticulon-like protein B2-lik	0.980	0.984	0.745	3e-96
255645926	253	unknown [Glycine max]	0.980	0.988	0.740	9e-96
359489676	255	PREDICTED: reticulon-like protein B1 iso	0.980	0.980	0.742	1e-95
255541732	253	conserved hypothetical protein [Ricinus	0.968	0.976	0.697	4e-94
217072252	260	unknown [Medicago truncatula] gi|3884968	0.980	0.961	0.689	1e-93
192910708	254	24 kDa seed maturation protein [Elaeis g	0.980	0.984	0.695	2e-93
255537629	260	conserved hypothetical protein [Ricinus	0.980	0.961	0.712	8e-93

>gi|359474299|ref|XP_002277080.2| PREDICTED: uncharacterized protein LOC100267262 [Vitis vinifera]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 184/254 (72%), Positives = 218/254 (85%), Gaps = 5/254 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHH 60
           MA+H     S  +S++EKI++KIHGHDSSSSDSD++K S   AFK+KV+R+FGREKP+H 
Sbjct: 5   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEKSSP-SAFKAKVYRIFGREKPVHK 63

Query: 61  VLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN 120
           VLG GKPAD+ LWRNKKISAGVLGGATA+W+LFELLEYHL+TLVCH SIL+LA+LFLWSN
Sbjct: 64  VLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFLWSN 123

Query: 121 ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLW 180
           A+TFINK+PP IP V +PE  VL+FASALR EINR   +LR +ASG+DLKKFL VIAGLW
Sbjct: 124 ATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIAGLW 183

Query: 181 LLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLK 240
           ++SIVG+WCNF+TLFYIVFVLLHTVPV+YEKYED +DSF EKA +EIK+QYAVFD     
Sbjct: 184 VVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDA---- 239

Query: 241 KVLSRIPKGALKKK 254
           KVLSRIP+G LK K
Sbjct: 240 KVLSRIPRGPLKDK 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742260|emb|CBI34409.3| unnamed protein product [Vitis vinifera]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 184/254 (72%), Positives = 218/254 (85%), Gaps = 5/254 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHH 60
           MA+H     S  +S++EKI++KIHGHDSSSSDSD++K S   AFK+KV+R+FGREKP+H 
Sbjct: 1   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEKSSP-SAFKAKVYRIFGREKPVHK 59

Query: 61  VLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN 120
           VLG GKPAD+ LWRNKKISAGVLGGATA+W+LFELLEYHL+TLVCH SIL+LA+LFLWSN
Sbjct: 60  VLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILFLWSN 119

Query: 121 ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLW 180
           A+TFINK+PP IP V +PE  VL+FASALR EINR   +LR +ASG+DLKKFL VIAGLW
Sbjct: 120 ATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVIAGLW 179

Query: 181 LLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLK 240
           ++SIVG+WCNF+TLFYIVFVLLHTVPV+YEKYED +DSF EKA +EIK+QYAVFD     
Sbjct: 180 VVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDA---- 235

Query: 241 KVLSRIPKGALKKK 254
           KVLSRIP+G LK K
Sbjct: 236 KVLSRIPRGPLKDK 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248944|ref|NP_001239711.1| uncharacterized protein LOC100811024 [Glycine max] gi|255641581|gb|ACU21063.1| unknown [Glycine max]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 190/255 (74%), Positives = 212/255 (83%), Gaps = 5/255 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSD-DDKPSSIDAFKSKVFRLFGREKPIH 59
           MAEH    E   +SL+EKI+ KIH HDSSSS    ++K S+ D+ KSKVFRLFGREKPIH
Sbjct: 1   MAEHHEHEEVKGESLLEKISGKIHDHDSSSSSDSDNEKTSASDSLKSKVFRLFGREKPIH 60

Query: 60  HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
           HVLG GKPAD+FLWRNKKISA  LG ATA+WVLFELLEYHL+TLVCH  IL LAVLFLWS
Sbjct: 61  HVLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILGLAVLFLWS 120

Query: 120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
           NASTFINKSPP+IP V +PEK VLEFASALR EINRA A+LR+IASGRDLKKFL VIAGL
Sbjct: 121 NASTFINKSPPKIPQVHIPEKPVLEFASALRVEINRAFALLRDIASGRDLKKFLSVIAGL 180

Query: 180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
           W+ SI+G+W NF+TLFYI FVLLHTVPV+YEKYED +DSFG KA  EIKKQYAVFD    
Sbjct: 181 WVFSILGSWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGGKAIAEIKKQYAVFDA--- 237

Query: 240 KKVLSRIPKGALKKK 254
            KVLS+IP+G LK K
Sbjct: 238 -KVLSKIPRGPLKDK 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513327|ref|XP_003525365.1| PREDICTED: reticulon-like protein B2-like isoform 1 [Glycine max]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 190/255 (74%), Positives = 212/255 (83%), Gaps = 5/255 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSD-DDKPSSIDAFKSKVFRLFGREKPIH 59
           MAEH    E   +SL+EKI+ KIH HDSSSS    +DK S+ D+FKS VFRLFGREKPIH
Sbjct: 1   MAEHHEHEEVKGESLLEKISGKIHDHDSSSSSDSDNDKTSATDSFKSNVFRLFGREKPIH 60

Query: 60  HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
           HVLG GKPAD+FLWRNKKISA  LG ATA+WVLFELLEYHL+TLVCH  IL+LA LFLWS
Sbjct: 61  HVLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILALAGLFLWS 120

Query: 120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
           NASTFINKSPP+IP V +PE+ VL+FASALR EINRA AVLR+IASGRDLKKFL VIAGL
Sbjct: 121 NASTFINKSPPKIPQVHIPEEPVLKFASALRIEINRAFAVLRDIASGRDLKKFLSVIAGL 180

Query: 180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
           W+ SI+G W NF+TLFYI FVLLHTVPV+YEKYED +DSFGEKA  EIKKQYAVFD    
Sbjct: 181 WVFSILGCWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGEKAIAEIKKQYAVFDA--- 237

Query: 240 KKVLSRIPKGALKKK 254
            KVLS+IP+G LK K
Sbjct: 238 -KVLSKIPRGPLKDK 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645926|gb|ACU23452.1| unknown [Glycine max]

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 188/254 (74%), Positives = 209/254 (82%), Gaps = 4/254 (1%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKPIHH 60
           MAEH    E   +SL+EKI        SSSSDSD+DK S+ D+FKS VFRLFGREKPIHH
Sbjct: 1   MAEHHEHEEVKGESLLEKIGKIHDHDSSSSSDSDNDKTSATDSFKSNVFRLFGREKPIHH 60

Query: 61  VLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN 120
           VLG GKPAD+FLWRNKKISA  LG ATA+WVLFELLEYHL+TLVCH  IL+LA LFLWSN
Sbjct: 61  VLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILALAGLFLWSN 120

Query: 121 ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLW 180
           ASTFINKSPP+IP V +PE+ VL+FASALR EINRA AVLR+IASGRDLKKFL VIAGLW
Sbjct: 121 ASTFINKSPPKIPQVHIPEEPVLKFASALRIEINRAFAVLRDIASGRDLKKFLSVIAGLW 180

Query: 181 LLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLK 240
           + SI+G W NF+TLFYI FVLLHTVPV+YEKYED +DSFGEKA  EIKKQYAVFD     
Sbjct: 181 VFSILGCWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGEKAIAEIKKQYAVFDA---- 236

Query: 241 KVLSRIPKGALKKK 254
           KVLS+IP+G LK K
Sbjct: 237 KVLSKIPRGPLKDK 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489676|ref|XP_003633964.1| PREDICTED: reticulon-like protein B1 isoform 2 [Vitis vinifera] gi|359489678|ref|XP_003633965.1| PREDICTED: reticulon-like protein B1 isoform 3 [Vitis vinifera] gi|297745364|emb|CBI40444.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 213/256 (83%), Gaps = 6/256 (2%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDD--KPSSIDAFKSKVFRLFGREKPI 58
           MAEHA    ++ +SL+EKITDK+ GHDSSSS SD D  KP+S    K+KVFRLFGREKP+
Sbjct: 1   MAEHAEGSGAASESLLEKITDKLQGHDSSSSGSDSDSDKPASPSPIKAKVFRLFGREKPV 60

Query: 59  HHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLW 118
           H VLG GK AD+FLWRNKKISAGVLGGATAMWVLFELLEYHL+TLVCHI ILSLA+LFLW
Sbjct: 61  HTVLGGGKHADVFLWRNKKISAGVLGGATAMWVLFELLEYHLLTLVCHILILSLAILFLW 120

Query: 119 SNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAG 178
           SNA+TFINKSPP IP V +PE   L+  +ALR EIN   AVLR+IASGRDLKKFL +IAG
Sbjct: 121 SNATTFINKSPPRIPEVHIPEDPFLQAVNALRIEINCGFAVLRDIASGRDLKKFLIIIAG 180

Query: 179 LWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 238
           LW+LSI+G+ CNF+TLFYI FVLLHTVPVIYEKYED+ID F EKATIEIKKQYAVFD   
Sbjct: 181 LWVLSILGSCCNFLTLFYITFVLLHTVPVIYEKYEDRIDPFAEKATIEIKKQYAVFDA-- 238

Query: 239 LKKVLSRIPKGALKKK 254
             KVLS+IPK  LK K
Sbjct: 239 --KVLSKIPKVPLKYK 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541732|ref|XP_002511930.1| conserved hypothetical protein [Ricinus communis] gi|223549110|gb|EEF50599.1| conserved hypothetical protein [Ricinus communis]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 180/258 (69%), Positives = 209/258 (81%), Gaps = 11/258 (4%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDD----DKPSSIDAFKSKVFRLFGREK 56
           MAEH    ES  +S++EKI++KIH HDSSSS   +     KP+S  + K+K+FRLFGRE+
Sbjct: 1   MAEHP---ESPIESVMEKISEKIHAHDSSSSSDSESDSEKKPTSPSSVKAKIFRLFGRER 57

Query: 57  PIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLF 116
           P+HHVLG GKPAD+FLWRNKKISA VLG ATA+W+LFEL+EYHL+TLVCHISIL+LA+LF
Sbjct: 58  PVHHVLGGGKPADVFLWRNKKISASVLGTATAIWILFELIEYHLLTLVCHISILTLAILF 117

Query: 117 LWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVI 176
           LWSNA TFINK+PP IP V +PE+ VL+ ASAL  EIN   AVLR IASG+DLKKFL VI
Sbjct: 118 LWSNAHTFINKTPPRIPQVHIPEEPVLQVASALTMEINHGFAVLRSIASGKDLKKFLVVI 177

Query: 177 AGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDE 236
           A  W LSIVG WCNF+TLFYI FVLLHTVPV+YEKYEDK+D F EKA IEIKKQYA+FD 
Sbjct: 178 AAFWALSIVGCWCNFLTLFYITFVLLHTVPVLYEKYEDKVDPFAEKAMIEIKKQYAMFDA 237

Query: 237 KVLKKVLSRIPKGALKKK 254
               KVLS+IP GALK K
Sbjct: 238 ----KVLSKIPVGALKAK 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072252|gb|ACJ84486.1| unknown [Medicago truncatula] gi|388496820|gb|AFK36476.1| unknown [Medicago truncatula]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/261 (68%), Positives = 213/261 (81%), Gaps = 11/261 (4%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSS-------SDSDDDKPSSIDAFKSKVFRLFG 53
           MA+H    E   +SL++KI+ KIH H  SS       +D  + K SS  + K+KVFRLFG
Sbjct: 1   MADHNEHEEVKSESLLDKISGKIHDHHDSSSSSSDSDNDKKEKKVSSPTSLKNKVFRLFG 60

Query: 54  REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLA 113
           REKP+H+VLG GKPAD+FLWRNKKISA  LG ATA+WVLFELLEYHL+TL+ H++IL+LA
Sbjct: 61  REKPLHNVLGGGKPADVFLWRNKKISATTLGVATALWVLFELLEYHLLTLISHLAILALA 120

Query: 114 VLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 173
           VLFLWSNASTFINKSPP+IP V +PE+ VL+ ASA+R EINRA A+LR+IASGRDLK+FL
Sbjct: 121 VLFLWSNASTFINKSPPKIPQVHIPEEPVLQIASAIRIEINRAFAILRDIASGRDLKQFL 180

Query: 174 GVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAV 233
            VIAGLW+LSIVG+W NF+TLFYI FVLLHTVPV+YEKYED++DSFGEKA  E KKQYAV
Sbjct: 181 SVIAGLWVLSIVGSWTNFLTLFYIAFVLLHTVPVLYEKYEDRVDSFGEKALHEFKKQYAV 240

Query: 234 FDEKVLKKVLSRIPKGALKKK 254
           FDE    KVLS+IPKG LK K
Sbjct: 241 FDE----KVLSKIPKGPLKDK 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910708|gb|ACF06462.1| 24 kDa seed maturation protein [Elaeis guineensis]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 178/256 (69%), Positives = 211/256 (82%), Gaps = 6/256 (2%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDSDDDKPS--SIDAFKSKVFRLFGREKPI 58
           MAEH+ E  S  +SL+EKI +K+HG DSSSS   D++ S  S  + K+K++RLFGRE+P+
Sbjct: 1   MAEHSEEASSKPESLMEKIAEKLHGDDSSSSSDSDNEKSEPSASSVKAKIYRLFGREEPV 60

Query: 59  HHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLW 118
           H VLG GKPAD+FLWRNKKISAGVLGGATA+WVLFELL+YHL+TLV H  +LSLA+LFLW
Sbjct: 61  HKVLGGGKPADVFLWRNKKISAGVLGGATAVWVLFELLDYHLLTLVGHCLVLSLAILFLW 120

Query: 119 SNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAG 178
           SNASTFINK PP IP V++PE   +  A +LRYEINRA AVLR+IASGRDLKKFL VIAG
Sbjct: 121 SNASTFINKIPPHIPEVSIPEDVAINVALSLRYEINRAFAVLRDIASGRDLKKFLAVIAG 180

Query: 179 LWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKV 238
           LW+LSI+G+ CNF+TLFYI+FV LHTVPV+YEKYEDK+DSF EKA  EIKKQY VFD   
Sbjct: 181 LWVLSILGSCCNFLTLFYILFVTLHTVPVLYEKYEDKVDSFAEKAMAEIKKQYVVFD--- 237

Query: 239 LKKVLSRIPKGALKKK 254
             KVLS+IP+G LK K
Sbjct: 238 -AKVLSKIPRGPLKDK 252

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537629|ref|XP_002509881.1| conserved hypothetical protein [Ricinus communis] gi|223549780|gb|EEF51268.1| conserved hypothetical protein [Ricinus communis]

 Score =  345 bits (886), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/261 (71%), Positives = 218/261 (83%), Gaps = 11/261 (4%)

Query: 1   MAEHAPEHESSDKSLVEKITDKIHGHDSSSSDS--DDDK-----PSSIDAFKSKVFRLFG 53
           MA+     ES  +SL++KI++KIHGHDSSSS    +D+K     PSS  + KSK++RLFG
Sbjct: 1   MADEHHHEESKGESLMDKISEKIHGHDSSSSSDSDNDEKLKPKSPSSPSSIKSKIYRLFG 60

Query: 54  REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLA 113
           REKP+HHVLG GKPADIFLWRNKK+SAGVLG ATA+WVLFEL+EYHL+TL+CH  IL+LA
Sbjct: 61  REKPVHHVLGGGKPADIFLWRNKKVSAGVLGFATAVWVLFELIEYHLLTLICHGFILALA 120

Query: 114 VLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 173
           +LFLWSNASTFINKSPP IP V +PE+ VL+ A+ALR EIN A A+LR+IASGRDLKKFL
Sbjct: 121 ILFLWSNASTFINKSPPHIPEVHIPEEPVLQVAAALRMEINYAFAILRDIASGRDLKKFL 180

Query: 174 GVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAV 233
            VIAGLW+LSIVG+WCNF+TLFYI FVLLHTVPV YEKYEDK+D+F EKA IEIKKQYAV
Sbjct: 181 SVIAGLWVLSIVGSWCNFLTLFYIAFVLLHTVPVFYEKYEDKVDAFAEKAAIEIKKQYAV 240

Query: 234 FDEKVLKKVLSRIPKGALKKK 254
           FD     KVLS+IP+G LK K
Sbjct: 241 FD----AKVLSKIPRGPLKDK 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	1.0	0.992	0.603	4.2e-79
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.815	0.756	0.688	2.7e-75
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.819	0.771	0.655	1.4e-73
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.980	0.980	0.560	2.2e-73
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.972	0.939	0.440	2.4e-44
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.8	0.906	0.418	1.6e-40
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.764	0.970	0.366	1.2e-33
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.654	0.822	0.371	4.9e-30
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.721	0.738	0.291	2.6e-22
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.721	0.893	0.281	2.5e-19

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 155/257 (60%), Positives = 187/257 (72%)

Query:     1 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXX-XXXXXXXAFKSKVFRLFGREKPIH 59
             M E     ES  + +VEKI                        +FKSK++RLFGREKP+H
Sbjct:     1 MVEDHKHEESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVH 60

Query:    60 HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
              VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWS
Sbjct:    61 KVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWS 120

Query:   120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
             NA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGL
Sbjct:   121 NACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGL 180

Query:   180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
             W+LSI+G+  NF+TLFY   VLL T+PV+YEKYEDK+D++GEKA  EIKKQYAV DEKVL
Sbjct:   181 WVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVL 240

Query:   240 KKVLSRIPKGAL-KKKD 255
             +KV+S+IP+GAL KKKD
Sbjct:   241 RKVISKIPRGALNKKKD 257

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 146/212 (68%), Positives = 174/212 (82%)

Query:    43 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLIT 102
             + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+T
Sbjct:    65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLT 124

Query:   103 LVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162
             L+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LRE
Sbjct:   125 LLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLRE 184

Query:   163 IASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 222
             IASGRDLKKFL  IAGLW+LSI+G   NF+TL YI  VLL TVP+ Y+KYEDK+D  GEK
Sbjct:   185 IASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEK 244

Query:   223 ATIEIKKQYAVFDEKVLKKVLSRIPKGALKKK 254
             A IE+KKQYAV DEKVL    S+IP G LK K
Sbjct:   245 AMIELKKQYAVLDEKVL----SKIPLGPLKNK 272

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 141/215 (65%), Positives = 176/215 (81%)

Query:    43 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLIT 102
             + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+T
Sbjct:    61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLT 120

Query:   103 LVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162
             L+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LRE
Sbjct:   121 LLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180

Query:   163 IASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEK 222
             IASGRD+KKFL  IAGLW+LSI+G   +F+TL YI  VLL TVP+ Y+KYEDK+DS+GEK
Sbjct:   181 IASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240

Query:   223 ATIEIKKQYAVFDEKVLKKVLSRIPKGALK--KKD 255
             A  E+KKQYAV D KV     S+IP+G LK  KKD
Sbjct:   241 AMAELKKQYAVLDAKVF----SKIPRGPLKDKKKD 271

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 143/255 (56%), Positives = 186/255 (72%)

Query:     1 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXX-XAFKSKVFRLFGREKPIH 59
             MAE   +   +++SL+EKI+                       A K+K++R+FGREKP+H
Sbjct:     1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVH 60

Query:    60 HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
              VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWS
Sbjct:    61 KVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWS 120

Query:   120 NASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGL 179
             NA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GL
Sbjct:   121 NAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGL 180

Query:   180 WLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 239
             W++S+VGNW NF+TL YI FV+LHTVP++YEK+EDK+D   EKA  E++KQY VFDEKVL
Sbjct:   181 WIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVL 240

Query:   240 KKVLSRIPKGALKKK 254
                 S+IP  +LK K
Sbjct:   241 ----SKIPIASLKAK 251

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 118/268 (44%), Positives = 152/268 (56%)

Query:     1 MAEHAPEHESSDKSLVEKITXXXXXXXXXXXXXXXXXXXXX-XAFKSKVFRLFGREKPIH 59
             MAE   +    ++SL+EKI                        A K+K++RLFGREKP+H
Sbjct:     1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVH 60

Query:    60 HVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS 119
              VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL S
Sbjct:    61 KVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLS 120

Query:   120 NASTFINKSP-PEIPVVT--LPEKFVLEFAS-ALRY---EINRALAVLR-EIAS--GRDL 169
             NA  F+NK   P     T    E  +  F    LR    EI+  L     E  S  G   
Sbjct:   121 NAHAFMNKGTFPYDCFCTEKRAEPGLCYFKEHCLRKGLEEISHELIQSTYETFSIMGFVT 180

Query:   170 KK--FLGVIAGLWLLSIVGNWCN-FVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIE 226
             +   ++G+  G W +  +G  C   V L    FV+LHTVP++YEK+EDK+D   EK   E
Sbjct:   181 RTSIYIGISGGFWAVDNLG--CGKLVQLLDSCFVVLHTVPMLYEKHEDKVDPVAEKTLKE 238

Query:   227 IKKQYAVFDEKVLKKVLSRIPKGALKKK 254
             +KK Y VFDEKVL    S++P  +LK K
Sbjct:   239 LKKHYMVFDEKVL----SKLPVASLKAK 262

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 87/208 (41%), Positives = 126/208 (60%)

Query:    47 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCH 106
             K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH
Sbjct:    19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICH 78

Query:   107 ISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASG 166
              S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A G
Sbjct:    79 ASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACG 138

Query:   167 RDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIE 226
             RD   F      L+++SI+G + NFV L +I FV + T+PV+YE YED +D+   K   +
Sbjct:   139 RDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRK 198

Query:   227 IKKQYAVFDEKVLKKVLSRIPKGALKKK 254
             +KK Y    +KV   VLS+IP+G +K K
Sbjct:   199 MKKLY----KKVDTNVLSKIPRGTVKNK 222

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 74/202 (36%), Positives = 120/202 (59%)

Query:    55 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAV 114
             E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +
Sbjct:     2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query:   115 LFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG 174
             LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   
Sbjct:    62 LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query:   175 VIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIE---IKKQY 231
             V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID   EK ++    I+ QY
Sbjct:   122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID---EKLSLTHRVIQTQY 178

Query:   232 AVFDEKVLKKVLSRIPKGALKK 253
                DE++L+K++++ P   +KK
Sbjct:   179 RKIDERLLQKIIAK-PTNKIKK 199

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/167 (37%), Positives = 101/167 (60%)

Query:    50 RLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISI 109
             +LF R++ IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +
Sbjct:     7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66

Query:   110 LSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDL 169
             L L++LFLWS +++ +N+  P +P   + E    E +  LR  +N+ L V  +IA  RD 
Sbjct:    67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126

Query:   170 KKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 216
             + +  V   L+LLS++G+  +F TL +   +++ TVP  YE+YED I
Sbjct:   127 ELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 55/189 (29%), Positives = 98/189 (51%)

Query:    68 ADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINK 127
             AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:   128 SPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG-VIAGLWLLSIVG 186
                 +P + L E+ V   A++ R ++N  L +  ++  G D + F   V+  LWLLS +G
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   187 NWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRI 246
             ++ +  TL YI  +L  T+P +Y KY+ K+D         +   Y + DE V+    SR+
Sbjct:   184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVI----SRL 239

Query:   247 PKGALKKKD 255
                  K KD
Sbjct:   240 SWSLSKDKD 248

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/185 (28%), Positives = 97/185 (52%)

Query:    69 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKS 128
             DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    ++K 
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:   129 PPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNW 188
              PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN 
Sbjct:    78 EPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNL 137

Query:   189 CNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPK 248
              +F T  +I  V+  TVP ++E+Y D+I         + K  Y    EK+L+ + +++  
Sbjct:   138 LDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKILE-MKNKLHH 196

Query:   249 GALKK 253
             G  +K
Sbjct:   197 GTEEK 201

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SH59	RTNLC_ARATH	No assigned EC number	0.6666	0.9803	0.9803	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam02453	164	pfam02453, Reticulon, Reticulon	4e-66

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  202 bits (515), Expect = 4e-66
 Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 67  PADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFIN 126
            AD+ LWR+ K S  V G    +W+LF L  Y L++++ ++ +L LAV FLW  A   +N
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 127 KSP-PEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIV 185
             P P  P VTL E+ V E A +LR  IN+AL  LR +  G DL   L    GLWLLS +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 186 GNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKK 229
           G+  + +TL YI  +L  TVP++YEKY+D+ID++ EKA  ++KK
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	97.15
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	94.17
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	93.82
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	92.33
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	90.26

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-58  Score=406.03  Aligned_cols=220  Identities=60%  Similarity=0.970  Sum_probs=211.1

Q ss_pred             CCCCCCCCCCCccchhhccccccCCCCcchhhccCCCcccceecccccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 025266           29 SSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHIS  108 (255)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWRn~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~l  108 (255)
                      |++|+++++.++++ .+++.+|+|+|++|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.+|++|+++
T Consensus         6 s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~   84 (230)
T KOG1792|consen    6 SSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHIL   84 (230)
T ss_pred             cccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34488888877666 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc-CCC--CCC-ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHH
Q 025266          109 ILSLAVLFLWSNASTFINK-SPP--EIP-VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSI  184 (255)
Q Consensus       109 ll~l~~~Fl~s~~~~~i~k-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~  184 (255)
                      ++.+.+.|.|+++..+++| ++|  ..| ++++|||.+++.+++++.++|+.+..+|++++|||+++|++++++||++++
T Consensus        85 ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~  164 (230)
T KOG1792|consen   85 LLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSY  164 (230)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999888 666  678 999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcCC
Q 025266          185 VGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGALKK  253 (255)
Q Consensus       185 iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v~~~~~~i~~~y~~~~~kvl~~v~skIP~~~~k~  253 (255)
                      +|+|||++||+|+|++++||+|++||+|||+||+++++++++++++|+++|+|++    +|||+|+.++
T Consensus       165 vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l----~kip~~~~~~  229 (230)
T KOG1792|consen  165 VGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVL----SKIPAGPRKK  229 (230)
T ss_pred             HHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHh----hcCCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999    9999998765

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=1.4e-37  Score=260.33  Aligned_cols=163  Identities=39%  Similarity=0.627  Sum_probs=48.0

Q ss_pred             ccceecccccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecCHH
Q 025266           67 PADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSP------PEIPVVTLPEK  140 (255)
Q Consensus        67 ~aDlLlWRn~k~Sg~vf~~~t~~w~Lf~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k~~------~~~p~~~isee  140 (255)
                      |+|+|+||||+.||++|++++++|+++++.++|++|++|+++++.+++.+++....+++++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            589999999999999999999999999999999999999999999999999888877777654      33447899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 025266          141 FVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSFG  220 (255)
Q Consensus       141 ~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~v  220 (255)
                      .++++++.+.+.+|..+..+|+++.++|++.|++++++||+++++|+++|++||+|++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025266          221 EKATIEIKK  229 (255)
Q Consensus       221 ~~~~~~i~~  229 (255)
                      ++++++++|
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            998887764

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=97.15  E-value=0.0063  Score=61.71  Aligned_cols=134  Identities=18%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             cccceecccccchhHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCC--c
Q 025266           66 KPADIFLWRNKKISAGVLGGATAMWVLF-ELLEYHLITLVCHISILSLAVLFLWSNASTFINK--------SPPEIP--V  134 (255)
Q Consensus        66 k~aDlLlWRn~k~Sg~vf~~~t~~w~Lf-~l~~yslltlv~~~lll~l~~~Fl~s~~~~~i~k--------~~~~~p--~  134 (255)
                      .+.++..|+||.+|..+++..+.+  .+ .|.+|     +.-..++.+++..+|.....-.+|        .||+..  +
T Consensus       505 ~~~~l~~We~P~kt~~Fl~~~~~i--I~r~wl~Y-----~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvE  577 (683)
T PF04842_consen  505 WLQKLASWEEPLKTLVFLALFLYI--IYRGWLGY-----IFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVE  577 (683)
T ss_pred             HHHHHhhccCcchhHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHH
Confidence            456899999999999988887653  32 23333     222333334444456433211222        222211  1


Q ss_pred             eecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 025266          135 VTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVP  206 (255)
Q Consensus       135 ~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP  206 (255)
                      -.+.-..+..-+.......|-++-++|.|++...++.+-++++.|.+++.+-..+.+-.++...++-.||-.
T Consensus       578 qilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre  649 (683)
T PF04842_consen  578 QILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE  649 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            112222333445666778899999999999999999999999999999999999999999999998888854

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.17  E-value=0.17  Score=45.38  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             HHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 025266          159 VLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKY-----------------------EDK  215 (255)
Q Consensus       159 ~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYeky-----------------------qd~  215 (255)
                      ...|++.+||.+.++.+.++..++..+-..++..++..++.+++++++.+|.++                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            466899999999999988888888888888888888888888888888777665                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 025266          216 IDSFGEKATIEIKKQYAVFDEKVL  239 (255)
Q Consensus       216 ID~~v~~~~~~i~~~y~~~~~kvl  239 (255)
                      ++++...+..+++...+++++=.+
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~ia~  145 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDIAL  145 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            778888888888888887776544

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=93.82  E-value=0.018  Score=48.79  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=37.9

Q ss_pred             ccchhhccccccCCCCcchhhccC-----CCcccceecccccchhHHHHHHHHHHHHH
Q 025266           40 SIDAFKSKVFRLFGREKPIHHVLG-----AGKPADIFLWRNKKISAGVLGGATAMWVL   92 (255)
Q Consensus        40 ~~~~~~~~~~r~f~r~~~~h~~Lg-----ggk~aDlLlWRn~k~Sg~vf~~~t~~w~L   92 (255)
                      ++.+++.+..|+-.--.-+-.++|     |.++..++.||||..|++...+.+++-+.
T Consensus        53 ~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv  110 (156)
T PF08372_consen   53 PPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV  110 (156)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence            456777777777543334566666     67899999999999999888776654333

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=92.33  E-value=2.1  Score=40.19  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=17.3

Q ss_pred             ccceecccccchhHHHHHHHHH
Q 025266           67 PADIFLWRNKKISAGVLGGATA   88 (255)
Q Consensus        67 ~aDlLlWRn~k~Sg~vf~~~t~   88 (255)
                      +.++++|+||..+-.++...+.
T Consensus        32 vl~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   32 VLRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHeEEeCCCCcchHHHHHHHH
Confidence            4589999999998877666553

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=90.26  E-value=1.9  Score=36.57  Aligned_cols=66  Identities=14%  Similarity=0.043  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 025266          147 SALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKY  212 (255)
Q Consensus       147 ~~v~~~iN~~l~~lr~l~~g~d~~~~lkv~v~L~vls~iGs~~s~lTLl~i~~v~~FTvP~lYeky  212 (255)
                      +.+...+......++.++.++|+..+..+++++++.+++--+..+..++++..+-.++=|.+-.++
T Consensus        72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            344555566678899999999999999999999999888877788888777777777777776543

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 36/267 (13%), Positives = 72/267 (26%), Gaps = 66/267 (24%)

Query: 9   ESSDKSLVEKI----TDKIHGHDSSSSDSDDDKPSSIDAFKSKVFRLFGREKP-----IH 59
           E    S++ ++     D+++  +   +  +  +       +  +  L    +P     I 
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKNVLID 156

Query: 60  HVLGAGKP---ADIFLWRNKKISAGVLGGATAMWVLF-------ELLEYHLITLVCHISI 109
            VLG+GK     D+    + K+   +       W+          +LE  L  L  +   
Sbjct: 157 GVLGSGKTWVALDVC--LSYKVQCKMDFKI--FWLNLKNCNSPETVLE-MLQKL-LYQID 210

Query: 110 LSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVL-EFASALRYEINRALAVLREIASGRD 168
            +              +     I +     +  L     +  YE    L VL  + + + 
Sbjct: 211 PNWTSR----------SDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVLLNVQNAKA 258

Query: 169 LKKF-LGVIAGLWLLSIVGNWCN--FVTLFYIVFVLLHTVPVIYEKYEDKIDSFGEKATI 225
              F L               C     T F  V   L      +   +    +       
Sbjct: 259 WNAFNLS--------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 226 EIKKQYAVFDEKVLKKVLSRIPKGALK 252
            +         K L      +P+  L 
Sbjct: 305 SL------L-LKYLDCRPQDLPREVLT 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.23
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.55

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.23  E-value=1.4e-07  Score=69.90  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=54.7

Q ss_pred             HHHHHHhhhccCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHH
Q 025266          117 LWSNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG  174 (255)
Q Consensus       117 l~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d~~~~lk  174 (255)
                      +|..+.+.++|++..+|       |+.+|+|.++++++.+...+|.++..+|++++++|+.+|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            78899999999998888       88999999999999999999999999999999999998874

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.55  E-value=1.4e-06  Score=61.27  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=44.4

Q ss_pred             HHHHHhhhccCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 025266          118 WSNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRD  168 (255)
Q Consensus       118 ~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~l~~g~d  168 (255)
                      |..+.+.++|++..+|       |+.+|+|.+++.++.+..++|.++..+|++++++|
T Consensus         3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            3445566778877777       88999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00