Citrus Sinensis ID: 025315
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 254 | ||||||
| 255551200 | 304 | Phytol kinase 1, chloroplast precursor, | 0.748 | 0.625 | 0.742 | 1e-80 | |
| 224103907 | 241 | predicted protein [Populus trichocarpa] | 0.771 | 0.813 | 0.698 | 7e-79 | |
| 224059822 | 244 | predicted protein [Populus trichocarpa] | 0.732 | 0.762 | 0.736 | 5e-78 | |
| 224103909 | 241 | predicted protein [Populus trichocarpa] | 0.771 | 0.813 | 0.695 | 1e-76 | |
| 449455009 | 322 | PREDICTED: probable phytol kinase 2, chl | 0.834 | 0.658 | 0.665 | 3e-76 | |
| 325516266 | 293 | phytol kinase [Solanum pennellii] | 0.862 | 0.747 | 0.609 | 6e-75 | |
| 359478755 | 309 | PREDICTED: probable phytol kinase 2, chl | 0.834 | 0.686 | 0.653 | 2e-74 | |
| 21593148 | 307 | unknown [Arabidopsis thaliana] | 0.909 | 0.752 | 0.584 | 3e-74 | |
| 51970322 | 307 | unknown protein [Arabidopsis thaliana] | 0.909 | 0.752 | 0.584 | 9e-74 | |
| 15237702 | 307 | putative phytol kinase 2 [Arabidopsis th | 0.909 | 0.752 | 0.579 | 1e-73 |
| >gi|255551200|ref|XP_002516647.1| Phytol kinase 1, chloroplast precursor, putative [Ricinus communis] gi|223544219|gb|EEF45742.1| Phytol kinase 1, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/190 (74%), Positives = 166/190 (87%)
Query: 42 LTSPSAAMLLPQNPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGL 101
L S A +L QNP++SD+CA+ +S A+A S LRLW+ETA R +FDQKLNRKLVHISIGL
Sbjct: 56 LRSAVRATMLHQNPIVSDLCATGLSGAIALSVLRLWKETAIRGIFDQKLNRKLVHISIGL 115
Query: 102 IFMLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGP 161
+FMLCWPLFSSG +GAILA+LTPGVNI RMLL+G G+WKDEATVKSMSR+GD RELL GP
Sbjct: 116 VFMLCWPLFSSGHQGAILAALTPGVNIFRMLLLGLGIWKDEATVKSMSRFGDHRELLKGP 175
Query: 162 LYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCA 221
LYYA+TITLAC IYWR SP IAAICNLCAGDG AD+VGRRFG++K+PYN++KSIAGS A
Sbjct: 176 LYYALTITLACAIYWRTSPIAIAAICNLCAGDGIADIVGRRFGRQKIPYNRDKSIAGSIA 235
Query: 222 MASAGFLSSI 231
MA AGF++S+
Sbjct: 236 MALAGFIASV 245
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103907|ref|XP_002313238.1| predicted protein [Populus trichocarpa] gi|222849646|gb|EEE87193.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224059822|ref|XP_002299996.1| predicted protein [Populus trichocarpa] gi|222847254|gb|EEE84801.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224103909|ref|XP_002313239.1| predicted protein [Populus trichocarpa] gi|224103911|ref|XP_002313240.1| predicted protein [Populus trichocarpa] gi|222849647|gb|EEE87194.1| predicted protein [Populus trichocarpa] gi|222849648|gb|EEE87195.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449455009|ref|XP_004145246.1| PREDICTED: probable phytol kinase 2, chloroplastic-like [Cucumis sativus] gi|449472865|ref|XP_004153718.1| PREDICTED: probable phytol kinase 2, chloroplastic-like [Cucumis sativus] gi|449530855|ref|XP_004172407.1| PREDICTED: probable phytol kinase 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|325516266|gb|ADZ24711.1| phytol kinase [Solanum pennellii] | Back alignment and taxonomy information |
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| >gi|359478755|ref|XP_002278580.2| PREDICTED: probable phytol kinase 2, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|21593148|gb|AAM65097.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|51970322|dbj|BAD43853.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15237702|ref|NP_200664.1| putative phytol kinase 2 [Arabidopsis thaliana] gi|92039771|sp|Q67ZM7.2|PHYK2_ARATH RecName: Full=Probable phytol kinase 2, chloroplastic; Flags: Precursor gi|51970576|dbj|BAD43980.1| unknown protein [Arabidopsis thaliana] gi|332009686|gb|AED97069.1| putative phytol kinase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 254 | ||||||
| TAIR|locus:2178768 | 307 | FOLK "AT5G58560" [Arabidopsis | 0.771 | 0.638 | 0.607 | 1.1e-62 | |
| TAIR|locus:2184447 | 304 | VTE5 "AT5G04490" [Arabidopsis | 0.732 | 0.611 | 0.376 | 4.1e-33 | |
| DICTYBASE|DDB_G0272380 | 223 | DDB_G0272380 [Dictyostelium di | 0.566 | 0.645 | 0.397 | 1.6e-22 |
| TAIR|locus:2178768 FOLK "AT5G58560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 119/196 (60%), Positives = 147/196 (75%)
Query: 44 SPSAAMLLPQNPVLSDXXXXXXXXXXXXXXLRLWEETARRDLFDQKLNRKLVHISIGLIF 103
S AA++ P+N VLSD L W E +R +FDQKL RKLVHI+IGL+F
Sbjct: 61 SSLAAVMFPENSVLSDVCAFGVTSIVAFSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVF 120
Query: 104 MLCWPLFSSGPRGAILASLTPGVNIIRMLLVGSGMWKDEATVKSMSRYGDRRELLTGPLY 163
MLCWPLFSSG +GA+ ASL PG+NI+RMLL+G G++ DE T+KSMSR+GDRRELL GPLY
Sbjct: 121 MLCWPLFSSGIQGALFASLVPGLNIVRMLLLGLGVYHDEGTIKSMSRHGDRRELLKGPLY 180
Query: 164 YAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQNKSIAGSCAMA 223
Y ++IT AC+ YW++SP IA ICNLCAGDG AD+VGRRFG KLPYN+NKS AGS MA
Sbjct: 181 YVLSITSACIYYWKSSPIAIAVICNLCAGDGMADIVGRRFGTEKLPYNKNKSFAGSIGMA 240
Query: 224 SAGFLSSIGSRHQVSS 239
+AGFL+S+ + +S
Sbjct: 241 TAGFLASVAYMYYFAS 256
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| TAIR|locus:2184447 VTE5 "AT5G04490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0272380 DDB_G0272380 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.I.2196.1 | hypothetical protein (244 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 254 | |||
| COG0170 | 216 | COG0170, SEC59, Dolichol kinase [Lipid metabolism] | 1e-12 | |
| pfam01148 | 259 | pfam01148, CTP_transf_1, Cytidylyltransferase fami | 1e-05 |
| >gnl|CDD|223248 COG0170, SEC59, Dolichol kinase [Lipid metabolism] | Back alignment and domain information |
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Score = 64.7 bits (158), Expect = 1e-12
Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 85 LFDQKLNRKLVHISIGLIFML--CWPLFS-SGPRGAILASLTPGVNIIRMLLVGSGMWKD 141
++ RKL+HIS GL+F+L F+ +L L + R+L+ G +
Sbjct: 14 DTRLEVRRKLLHISGGLLFLLYILRDKFAIILFLLILLIILLLEFELFRLLIPG----LE 69
Query: 142 EATVKSMSRYG-------DRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDG 194
+S ++ G + Y I L IA I L GDG
Sbjct: 70 GKVTLLLSELLSLIEREREKNGPGLGGIIYFIGGGLL-ASLLFPIEVAIAGILVLALGDG 128
Query: 195 FADVVGRRFGKRKLPYNQNKSIAGSCAMASAGFLSSI 231
A ++G+R+G+ K KS+ GS A A FL +
Sbjct: 129 LASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLL 165
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Length = 216 |
| >gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 254 | |||
| KOG4453 | 269 | consensus Predicted ER membrane protein [Function | 99.95 | |
| COG0170 | 216 | SEC59 Dolichol kinase [Lipid metabolism] | 99.81 | |
| PF01148 | 259 | CTP_transf_1: Cytidylyltransferase family; InterPr | 99.72 | |
| KOG2468 | 510 | consensus Dolichol kinase [Lipid transport and met | 99.66 | |
| PRK11624 | 285 | cdsA CDP-diglyceride synthase; Provisional | 99.31 | |
| COG0575 | 265 | CdsA CDP-diglyceride synthetase [Lipid metabolism] | 99.01 | |
| PLN02953 | 403 | phosphatidate cytidylyltransferase | 98.87 | |
| PLN02594 | 342 | phosphatidate cytidylyltransferase | 98.83 | |
| KOG1440 | 432 | consensus CDP-diacylglycerol synthase [Lipid trans | 97.9 | |
| COG4589 | 303 | Predicted CDP-diglyceride synthetase/phosphatidate | 97.82 | |
| PRK04032 | 159 | hypothetical protein; Provisional | 96.97 | |
| TIGR00297 | 237 | conserved hypothetical protein TIGR00297. | 93.26 | |
| PF01940 | 226 | DUF92: Integral membrane protein DUF92; InterPro: | 92.16 | |
| COG1836 | 247 | Predicted membrane protein [Function unknown] | 91.21 | |
| PF01864 | 175 | DUF46: Putative integral membrane protein DUF46; I | 87.31 |
| >KOG4453 consensus Predicted ER membrane protein [Function unknown] | Back alignment and domain information |
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Probab=99.95 E-value=9.8e-29 Score=215.53 Aligned_cols=164 Identities=32% Similarity=0.567 Sum_probs=143.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccchhHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q 025315 54 NPVLSDVCASAVSAAVAASCLRLWEETARRDLFDQKLNRKLVHISIGLIFMLCWPLFSSGPRGAILASLTPGVNIIRMLL 133 (254)
Q Consensus 54 ~~~~~d~~~~~~~~~~~~~~l~~~e~l~~r~~~~~e~~RKlvHi~~Glv~~l~~~~f~~~~~~~~la~l~~~l~~lr~~~ 133 (254)
+.+.||++..+....+.+.++.+++...++..+++.+.||++|+..|.++.+.||+|+ |+..
T Consensus 60 ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi~ifigdlirlnWP~Fs------------------rLy~ 121 (269)
T KOG4453|consen 60 NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFIHIFIGDLIRLNWPIFS------------------RLYI 121 (269)
T ss_pred hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhHHHHhccHHHH------------------HHHH
Confidence 6789999999999999999999999999999999999999999999999999999886 3333
Q ss_pred hhcccccchhhhhhcccccccccccchhHHHHHHHHHHHHHHhcCCchHHHHHHHHHhchhhhhhhccccCccccCCCCC
Q 025315 134 VGSGMWKDEATVKSMSRYGDRRELLTGPLYYAITITLACVIYWRNSPNGIAAICNLCAGDGFADVVGRRFGKRKLPYNQN 213 (254)
Q Consensus 134 ~gl~~~~~~~~i~~~~R~~e~~~~l~G~lyy~l~~~l~~~lfw~~~pi~i~aIl~L~~GDg~AalVG~~fGr~klp~~~~ 213 (254)
.+++...++ ++| +.++|++||.+++.....+||.+.|++.+.++.+| |+.|++||||||+.|.|++++
T Consensus 122 r~lg~lmre-----~er-----hl~nGvLfYvLgl~fs~~ff~kespi~s~~Llswc--Dt~AdtvGRKfG~~tpk~akn 189 (269)
T KOG4453|consen 122 RGLGILMRE-----VER-----HLLNGVLFYVLGLLFSAVFFWKESPIGSISLLSWC--DTIADTVGRKFGSTTPKYAKN 189 (269)
T ss_pred hcccccchH-----HHH-----HHhcchHHHHHHHHHHhhccccccHHHHHHHHHHh--hhHHHHHhhhccccCCCcCCC
Confidence 334433322 332 36799999999999999999999988877777766 999999999999999999999
Q ss_pred CceehhHHHHHHHHHHHHHHHHhhhccc--hhhhhh
Q 025315 214 KSIAGSCAMASAGFLSSIGSRHQVSSAM--GKQKKI 247 (254)
Q Consensus 214 KS~EGSla~fv~s~l~~~~~l~~f~~~g--~~~~~~ 247 (254)
|||+||++||.+++.+++.+++||.+.| ++|..+
T Consensus 190 KSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~ 225 (269)
T KOG4453|consen 190 KSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSW 225 (269)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhccCcchhcccc
Confidence 9999999999999999999999999999 888765
|
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| >COG0170 SEC59 Dolichol kinase [Lipid metabolism] | Back alignment and domain information |
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| >PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2 | Back alignment and domain information |
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| >KOG2468 consensus Dolichol kinase [Lipid transport and metabolism] | Back alignment and domain information |
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| >PRK11624 cdsA CDP-diglyceride synthase; Provisional | Back alignment and domain information |
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| >COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism] | Back alignment and domain information |
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| >PLN02953 phosphatidate cytidylyltransferase | Back alignment and domain information |
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| >PLN02594 phosphatidate cytidylyltransferase | Back alignment and domain information |
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| >KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism] | Back alignment and domain information |
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| >COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only] | Back alignment and domain information |
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| >PRK04032 hypothetical protein; Provisional | Back alignment and domain information |
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| >TIGR00297 conserved hypothetical protein TIGR00297 | Back alignment and domain information |
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| >PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins | Back alignment and domain information |
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| >COG1836 Predicted membrane protein [Function unknown] | Back alignment and domain information |
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| >PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 254 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 60/201 (29%)
Query: 18 RIRVRSPSPKFPPRFSQFSISRPNLTSPSAAMLLPQNPVLSDVCASAVSAAVAASCLRLW 77
I++R S + + S+P LL VL +V + A SC ++
Sbjct: 222 NIKLRIHSIQ--AELRRLLKSKPYENC-----LL----VLLNVQNAKAWNAFNLSC-KIL 269
Query: 78 EETARRDLFDQKLNRKLVHISI-----GL-------IFMLC-WPLFSSGPRGAILASLTP 124
T + + D HIS+ L + + PR + + P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--P 327
Query: 125 -GVNII-RMLLVGSGMWKD-------------EATVKSMSRYGDRRELLTGPLYYAITI- 168
++II + G W + E+++ + R+ ++ +++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK------MFDRLSVF 381
Query: 169 ---------TLACVIYWRNSP 180
L + W +
Sbjct: 382 PPSAHIPTILL--SLIWFDVI 400
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00