Citrus Sinensis ID: 025385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MGAEAKATHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQLYGMH
Secondary Structure (PSIPRED)
cccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEccccccccccccccEEEHHHHHHHHccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccccHHHHHHHHHHcccccccccHHHcccccEEEEEcccccccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccEEEEEEEEccccccccccccccEEcccccccEEEcccccccccccccEcccccccccEEEEEEcccccccccccccEEEEHHHccHHHHHccccccccccccccEEEEEEEEEEEccccEEEEEEEEEcccHccccccccccccccccEEEEEEEcccccccccccccccccEEEEEcccccccHHHHHHHHEEccccccHHccHHHcccccEEEEccccccccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGAEAKATHLMMSKVFstcnlpisisksksfklvphhnskIYAASFkknidssqpqivkksskiprplitvspsdgrwhgnwnSEYVVSLKQLRLADLiedddhlhqhknkdAQVSINLSIQKhasfgfsvdgrIITSFsrkcsycsspyckkidtTFNVWVLLSSrenrnvqlpdiggdpsviyvkpgyqadLDSLVQDTIRLTTAVKDTcsetcenseptvqyIGAKNTASMAKRWGRLLELRntqlygmh
Flexible Loop (DISEMBL)
mgaeakatHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAAsfkknidssqpqivkksskiprplitvspsdgrwhgnWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENrnvqlpdiggDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDtcsetcenseptvqyigakntaSMAKRWGRLLElrntqlygmh
Low Complexity Region (SEG)
MGAEAKATHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQLYGMH
Disordered region (IsUnstruct)
***********MSKVFSTCNLPISISKSKSFKLVPHHNSKIYAA************************ITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNT******
Disordered Region (DISOPRED)
************SKVFSTCNLP*****************************************************GRWHGNWNSEYVVSLKQLRLAD*****************VSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLL***************DPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCEN**********************LLELRNT*LY***
Disordered Region (DISEMBL)
********HLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQLYGMH
Disordered Region (DISPRO)
*******THLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKK***SSQPQIV*KSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQLYG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAEAKATHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQLYGMH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
358249006	247	uncharacterized protein LOC100788798 [Gl	0.869	0.890	0.577	2e-70
359473495	235	PREDICTED: uncharacterized protein LOC10	0.731	0.787	0.680	4e-68
449526658	230	PREDICTED: uncharacterized protein LOC10	0.766	0.843	0.618	3e-66
449527769	231	PREDICTED: uncharacterized LOC101221885	0.762	0.835	0.603	2e-65
449461695	186	PREDICTED: uncharacterized protein LOC10	0.715	0.973	0.640	8e-65
297830644	226	hypothetical protein ARALYDRAFT_479497 [	0.703	0.787	0.623	3e-61
18402369	229	uncharacterized protein [Arabidopsis tha	0.703	0.777	0.618	1e-60
186510250	226	uncharacterized protein [Arabidopsis tha	0.703	0.787	0.618	1e-60
357473857	251	hypothetical protein MTR_4g074590 [Medic	0.944	0.952	0.488	5e-59
297738227	222	unnamed protein product [Vitis vinifera]	0.679	0.774	0.618	4e-56

>gi|358249006|ref|NP_001239977.1| uncharacterized protein LOC100788798 [Glycine max] gi|255647019|gb|ACU23978.1| unknown [Glycine max]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 165/227 (72%), Gaps = 7/227 (3%)

Query: 26  SKSKSFKLVPH---HNSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNW 82
           +K K+ +L+     +N+     + K+  D   P I K +S+ PR LIT+SP DG++HG+W
Sbjct: 25  TKLKTLRLLSRFHSYNNNATVTASKRKDDLQSPLIGKNTSRAPRRLITISPGDGKYHGDW 84

Query: 83  NSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRK 142
             +Y VSL  L L DLIEDD++      KDAQV INLSIQKHASFG SVDGR+ TSF+RK
Sbjct: 85  TCDYRVSLHDLELQDLIEDDNN----SRKDAQVFINLSIQKHASFGLSVDGRVTTSFTRK 140

Query: 143 CSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTI 202
           CS CSSPYC++ID  FNVWVL++ R++R + LPDIGGDP+VIYV+PGY+ DLDSLVQD I
Sbjct: 141 CSTCSSPYCRQIDAKFNVWVLIARRDDRKIPLPDIGGDPNVIYVRPGYEVDLDSLVQDAI 200

Query: 203 RLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGRLLELRNTQL 249
           RL + VKDTCSE CE SE T+QYI  +  AS+ KRW RLLEL+   L
Sbjct: 201 RLNSVVKDTCSELCEKSEGTIQYITGQGQASVDKRWSRLLELKKENL 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473495|ref|XP_002269529.2| PREDICTED: uncharacterized protein LOC100253004 [Vitis vinifera]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 156/194 (80%), Gaps = 9/194 (4%)

Query: 57  IVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVS 116
           I KKSS+ P+ LIT+S SDGRWHG WNS+YV S ++L      + +D + + + KDA+VS
Sbjct: 50  IAKKSSRSPKRLITISTSDGRWHGKWNSDYVFSFREL------QLEDLVEEDEEKDAEVS 103

Query: 117 INLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPD 176
           I+L I KHASFGFSVDGRIITSF+RKCS CSSPYCK++DT F VWVL +SREN    L +
Sbjct: 104 ISLCIHKHASFGFSVDGRIITSFTRKCSNCSSPYCKEVDTNFTVWVLPTSREN--CGLAE 161

Query: 177 IGGD-PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMA 235
           IGGD PSVIYVKPG +A+LDSL+QDTIRLTT+VKDTCSETCE SEPT+QYIGAKN AS+ 
Sbjct: 162 IGGDDPSVIYVKPGCEANLDSLIQDTIRLTTSVKDTCSETCEKSEPTLQYIGAKNAASID 221

Query: 236 KRWGRLLELRNTQL 249
            RW RLLELRN  L
Sbjct: 222 MRWSRLLELRNANL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526658|ref|XP_004170330.1| PREDICTED: uncharacterized protein LOC101223452 [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/202 (61%), Positives = 152/202 (75%), Gaps = 8/202 (3%)

Query: 45  SFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDH 104
           +FK    S +  I  +S+K  R LIT+S +  RW G W  +Y++SL+ L L DL+ED+  
Sbjct: 32  TFKIKASSKRNDISLRSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDE-- 89

Query: 105 LHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLL 164
                NK+A V INL I+KHASFGF+VDGRI TSF+RKC  CSSPYC++I+  FNV VL 
Sbjct: 90  -----NKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLS 144

Query: 165 SSRENRNVQLPDIGGD-PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTV 223
           S+R NR + LPDIGGD PSVIYVKPG +ADLDSLV+DTIRLTT+ KDTCSE CE S+PTV
Sbjct: 145 SNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTV 204

Query: 224 QYIGAKNTASMAKRWGRLLELR 245
           QYIGA+N AS+ KRW RLLELR
Sbjct: 205 QYIGAQNAASIDKRWSRLLELR 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527769|ref|XP_004170882.1| PREDICTED: uncharacterized LOC101221885 [Cucumis sativus]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 155/207 (74%), Gaps = 14/207 (6%)

Query: 40  KIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLI 99
           KI A+S + +I       +++S+K  R LIT+S +  RW G W  +Y++SL+ L L DL+
Sbjct: 34  KIKASSKRNDIS------LRRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLV 87

Query: 100 EDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFN 159
           ED+       N +A V INL I+KHASFGF+VDGRI TSF+RKC  CSSPYC++I+  FN
Sbjct: 88  EDE-------NNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFN 140

Query: 160 VWVLLSSRENRNVQLPDIGGD-PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCEN 218
           V VL S+R NR + LPDIGGD PSVIYVKPG +ADLDSLV+DTIRLTT+ KDTCSE CE 
Sbjct: 141 VLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEK 200

Query: 219 SEPTVQYIGAKNTASMAKRWGRLLELR 245
           S+PTVQYIGA+N AS+ KRW RLLELR
Sbjct: 201 SQPTVQYIGAQNAASIDKRWSRLLELR 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461695|ref|XP_004148577.1| PREDICTED: uncharacterized protein LOC101202864 [Cucumis sativus]

 Score =  253 bits (645), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 147/189 (77%), Gaps = 8/189 (4%)

Query: 58  VKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSI 117
           +K+S+K  R LIT+S +  RW G W  +Y++SL+ L L DL+ED+       N +A V I
Sbjct: 1   MKRSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDE-------NNNAHVFI 53

Query: 118 NLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDI 177
           NL I+KHASFGF+VDGRI TSF+RKC  CSSPYC++I+  FNV VL S+R NR + LPDI
Sbjct: 54  NLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDI 113

Query: 178 GGD-PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAK 236
           GGD PSVIYVKPG +ADLDSLV+DTIRLTT+ KDTCSE CE S+PTVQYIGA+N AS+ K
Sbjct: 114 GGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDK 173

Query: 237 RWGRLLELR 245
           RW RLLELR
Sbjct: 174 RWSRLLELR 182

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830644|ref|XP_002883204.1| hypothetical protein ARALYDRAFT_479497 [Arabidopsis lyrata subsp. lyrata] gi|297329044|gb|EFH59463.1| hypothetical protein ARALYDRAFT_479497 [Arabidopsis lyrata subsp. lyrata]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/186 (62%), Positives = 147/186 (79%), Gaps = 8/186 (4%)

Query: 61  SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
           SSK  + LIT+SPS+G+W+GNWN++Y VSL+ L L DL+ED          +++VS++LS
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWNTQYDVSLRDLHLQDLVEDGP-------PNSRVSVDLS 98

Query: 121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
           +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct: 99  VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 158

Query: 181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWG 239
            PSVIYV+PGY+A+LDSLVQDTIRLTT  KD CS++CE SEPT+ Y+G  NTAS+ KRW 
Sbjct: 159 DPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGETNTASVHKRWS 218

Query: 240 RLLELR 245
           RLLEL+
Sbjct: 219 RLLELK 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402369|ref|NP_566648.1| uncharacterized protein [Arabidopsis thaliana] gi|13430476|gb|AAK25860.1|AF360150_1 unknown protein [Arabidopsis thaliana] gi|15810535|gb|AAL07155.1| unknown protein [Arabidopsis thaliana] gi|21593667|gb|AAM65634.1| unknown [Arabidopsis thaliana] gi|332642769|gb|AEE76290.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 147/186 (79%), Gaps = 8/186 (4%)

Query: 61  SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
           SSK  + LIT+SPS+G+W+GNW ++Y VSL+ L+L DL+ED          +++VS++LS
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGP-------PNSRVSVDLS 101

Query: 121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
           +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct: 102 VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 161

Query: 181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWG 239
            PSVIYV+PGY+A+LDSLVQDTIRLTT  KD CS++CE SEPT+ Y+G  NTAS+ KRW 
Sbjct: 162 DPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWS 221

Query: 240 RLLELR 245
           RLLEL+
Sbjct: 222 RLLELK 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186510250|ref|NP_001118666.1| uncharacterized protein [Arabidopsis thaliana] gi|332642770|gb|AEE76291.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 147/186 (79%), Gaps = 8/186 (4%)

Query: 61  SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
           SSK  + LIT+SPS+G+W+GNW ++Y VSL+ L+L DL+ED          +++VS++LS
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGP-------PNSRVSVDLS 98

Query: 121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
           +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct: 99  VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 158

Query: 181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWG 239
            PSVIYV+PGY+A+LDSLVQDTIRLTT  KD CS++CE SEPT+ Y+G  NTAS+ KRW 
Sbjct: 159 DPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWS 218

Query: 240 RLLELR 245
           RLLEL+
Sbjct: 219 RLLELK 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473857|ref|XP_003607213.1| hypothetical protein MTR_4g074590 [Medicago truncatula] gi|217073908|gb|ACJ85314.1| unknown [Medicago truncatula] gi|355508268|gb|AES89410.1| hypothetical protein MTR_4g074590 [Medicago truncatula] gi|388504480|gb|AFK40306.1| unknown [Medicago truncatula]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 165/252 (65%), Gaps = 13/252 (5%)

Query: 5   AKATHLMMSKVFSTCNLPI-SISKSKSFKLVPHHN-------SKIYAASFKKNIDSSQPQ 56
           AK+ +L+  + FS+   P  + +K+K F  +   +       S    AS K+  +   P 
Sbjct: 2   AKSGNLVSQRSFSSIFNPCHTATKAKPFSFLSQFHTYNNTSGSVTITASTKRKDNLDSPL 61

Query: 57  IVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVS 116
           I K +++  R LIT+SP+DG+++G W S+Y+VSL+ L L DLIE +D       K+AQV 
Sbjct: 62  IGKNTNRATRRLITISPADGKYNGEWTSDYLVSLRDLHLQDLIEVEDD----PRKNAQVV 117

Query: 117 INLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVL-LSSRENRNVQLP 175
           INL +QKHASFG SVD RI TSF  KCS CSSPYC++ID  FNVWVL  ++R+ R   LP
Sbjct: 118 INLCVQKHASFGLSVDARITTSFPSKCSNCSSPYCRQIDAKFNVWVLRATNRDKRKTPLP 177

Query: 176 DIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMA 235
           +IG DP VIY +PGY+ DLDS+V+D IRL +AV DTCSE C+ SE T+Q    ++ AS  
Sbjct: 178 EIGDDPYVIYTRPGYEVDLDSIVKDAIRLNSAVNDTCSELCKKSEGTIQNTSGQSQASFD 237

Query: 236 KRWGRLLELRNT 247
           KRW RLLEL+ T
Sbjct: 238 KRWSRLLELKKT 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738227|emb|CBI27428.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/194 (61%), Positives = 143/194 (73%), Gaps = 22/194 (11%)

Query: 57  IVKKSSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVS 116
           I KKSS+ P+ LIT+S SDGRWHG WNS+YV S ++L      + +D + + + KDA+VS
Sbjct: 50  IAKKSSRSPKRLITISTSDGRWHGKWNSDYVFSFREL------QLEDLVEEDEEKDAEVS 103

Query: 117 INLSIQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPD 176
           I+L I KHASFGFSVDGRIITSF+RKCS CSSPYCK++DT F VWVL +SRE  N  L +
Sbjct: 104 ISLCIHKHASFGFSVDGRIITSFTRKCSNCSSPYCKEVDTNFTVWVLPTSRE--NCGLAE 161

Query: 177 IGG-DPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMA 235
           IGG DPS+        +DL      TIRLTT+VKDTCSETCE SEPT+QYIGAKN AS+ 
Sbjct: 162 IGGDDPSL--------SDL-----YTIRLTTSVKDTCSETCEKSEPTLQYIGAKNAASID 208

Query: 236 KRWGRLLELRNTQL 249
            RW RLLELRN  L
Sbjct: 209 MRWSRLLELRNANL 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2092256	229	AT3G19800 "AT3G19800" [Arabido	0.703	0.777	0.618	5.1e-58

TAIR|locus:2092256 AT3G19800 "AT3G19800" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 115/186 (61%), Positives = 147/186 (79%)

Query:    61 SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
             SSK  + LIT+SPS+G+W+GNW ++Y VSL+ L+L DL+ED          +++VS++LS
Sbjct:    49 SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGP-------PNSRVSVDLS 101

Query:   121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
             +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct:   102 VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 161

Query:   181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWG 239
              PSVIYV+PGY+A+LDSLVQDTIRLTT  KD CS++CE SEPT+ Y+G  NTAS+ KRW 
Sbjct:   162 DPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWS 221

Query:   240 RLLELR 245
             RLLEL+
Sbjct:   222 RLLELK 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       253   0.00083  114 3  11 22  0.47    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.07u 0.09s 23.16t   Elapsed:  00:00:02
  Total cpu time:  23.07u 0.09s 23.16t   Elapsed:  00:00:02
  Start:  Fri May 10 07:04:43 2013   End:  Fri May 10 07:04:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021185001 SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (243 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam02620	118	pfam02620, DUF177, Uncharacterized ACR, COG1399	5e-05

>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 131 VDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGY 190
           +DG +  + +  C  C  P    +D  F    +    E  + +L D   D  ++    G 
Sbjct: 1   LDGEVEATVTLPCDRCLEPVEYPLDVDFEELFVPEEEEAEDEELED--DDEEILV--EGD 56

Query: 191 QADLDSLVQDTIRLTTAVKDTCSETCENSEP 221
           + DL  LV++ + L   +K  CSE C+    
Sbjct: 57  EIDLGELVEEELLLALPMKPLCSEDCKGELL 87

Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF02620	119	DUF177: Uncharacterized ACR, COG1399; InterPro: IP	99.95
PRK11193	172	hypothetical protein; Provisional	99.9
COG1399	176	Predicted metal-binding, possibly nucleic acid-bin	99.9

>PF02620 DUF177: Uncharacterized ACR, COG1399; InterPro: IPR003772 This entry describes proteins of unknown function

Probab=99.95  E-value=1.4e-28  Score=193.03  Aligned_cols=112  Identities=23%  Similarity=0.399  Sum_probs=93.7

Q ss_pred             EEEEEEEEEeeccCccccccccccceeEEEEEEeccccccCCCCCCCCCCCceeeecCCceeeCcHHHHHhhhhcCCCcc
Q 025385          131 VDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKD  210 (253)
Q Consensus       131 V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~~~ed~~~el~El~~d~~~iy~~~GDeIDLdelI~EqIiLalPmK~  210 (253)
                      |+|+|++++..+|+|||++|.++++.+|.+.|.+.....   +..+..+++..++.+.++.|||.++|+|+|+|++||++
T Consensus         1 v~g~i~~~v~~~C~RCL~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~iDl~~~i~e~ilL~iP~~~   77 (119)
T PF02620_consen    1 VDGRIEGTVTLPCDRCLEPFDYPIDEDFEEVFVPEEEEE---EDEELDEEDEEVIPVEDDEIDLAELIEEEILLAIPMKP   77 (119)
T ss_pred             CEEEEEEEEEEEEcccCcccCceEEEEEEEEEEcCCccc---ccccCCCCCceEEecCCCEEeHHHHHHHHHHHcCCCcc
Confidence            689999999999999999999999999999998763321   11111113334444689999999999999999999999


Q ss_pred             cCCCCCcc--cCcccccc-----cCccCCCCCchHHHHHHHH
Q 025385          211 TCSETCEN--SEPTVQYI-----GAKNTASMAKRWGRLLELR  245 (253)
Q Consensus       211 LCSEDCKG--LCP~CG~~-----c~c~~e~IDPR~AkLkkL~  245 (253)
                      +|+++|+|  +|+.||..     |.|..+.+|||||+|++||
T Consensus        78 ~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~~dPrfa~L~~Lk  119 (119)
T PF02620_consen   78 LCSEDCKGEMLCPVCGANLNEEPCECEEEKIDPRFAALKKLK  119 (119)
T ss_pred             cCcccCcccccCCcccccccccccccccCCCCCCHHHHhccC
Confidence            99999999  99999992     6778899999999999985

>PRK11193 hypothetical protein; Provisional

Probab=99.90  E-value=9.4e-24  Score=179.48  Aligned_cols=140  Identities=19%  Similarity=0.267  Sum_probs=107.6

Q ss_pred             eccccc-cccccccCCcccccCCCcccceEEEEEEEEecC-CeEEEEEEEEEEEeeccCccccccccccceeEEEEEEec
Q 025385           88 VSLKQL-RLADLIEDDDHLHQHKNKDAQVSINLSIQKHAS-FGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLS  165 (253)
Q Consensus        88 ~sl~~l-~l~d~~~~~~~l~~~~~k~apV~V~l~V~k~~g-~~l~V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~  165 (253)
                      +.|.+| ||.++..+.         .+||+|++.+.+. + +++.|+|++++.+...|+|||++|.++++.+|...|+.+
T Consensus        26 ~~~~~l~Rl~~~l~~~---------~~~v~v~~~~~~~-~~~~~~v~g~v~~~v~l~C~RCL~~~~~~l~~~~~~~~~~~   95 (172)
T PRK11193         26 YPPEQLKRLAESVVSV---------DSDVEVSLSFGID-NQRLVVLKGKAVVEVTLECQRCNEPFTHQVEVEFCFSPVRN   95 (172)
T ss_pred             ecHHHhhHHHHHhcCc---------CCceEEEEEEEEc-CCCeEEEEEEEEEEEEEECCCCCccCceEEEEEEEEEEecC
Confidence            344444 565555543         4689999999999 6 589999999999999999999999999999999888643


Q ss_pred             cccccCCCCCCCCCCCceeeecCCceeeCcHHHHHhhhhcCCCcccCCCCCcccCccccc-----ccCccCCCCCchHHH
Q 025385          166 SRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQY-----IGAKNTASMAKRWGR  240 (253)
Q Consensus       166 ~~ed~~~el~El~~d~~~iy~~~GDeIDLdelI~EqIiLalPmK~LCSEDCKGLCP~CG~-----~c~c~~e~IDPR~Ak  240 (253)
                      .++  ..+++   ++...+++.+|+.|||+++|+|+|+|++||+++|+++   +||.||.     .|.|..+..+| ||+
T Consensus        96 e~~--~~~~~---~~~e~~~~~~~~~iDl~~lv~dellLaLP~~plc~~~---~C~~~~~~~~~~~~~~~~~~~~P-FAv  166 (172)
T PRK11193         96 DEQ--AEELP---EAYEPIEVNEFGEVDLLQLVEDELILALPIVPMHDSE---HCEVSEADMVFGELPEEAEKPNP-FAV  166 (172)
T ss_pred             hhh--hhhCc---ccccceeeCCcCcccHHHHHHHHHHHcCCCcCcCCcc---cCCCcccccccCCCchhccCCCh-HHH
Confidence            211  11111   2212233367899999999999999999999999998   8999996     25555556677 999


Q ss_pred             HHHHHH
Q 025385          241 LLELRN  246 (253)
Q Consensus       241 LkkL~k  246 (253)
                      |++||+
T Consensus       167 L~~Lk~  172 (172)
T PRK11193        167 LASLKR  172 (172)
T ss_pred             HHHhcC
Confidence            999974

>COG1399 Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]

Probab=99.90  E-value=1.4e-23  Score=180.95  Aligned_cols=129  Identities=16%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             cceEEEEEEEEecCC-eEEEEEEEEEEEeeccCccccccccccceeEEEEEEeccccccCCCCCCCCCCCceeeecCCce
Q 025385          113 AQVSINLSIQKHASF-GFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQ  191 (253)
Q Consensus       113 apV~V~l~V~k~~g~-~l~V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~~~ed~~~el~El~~d~~~iy~~~GDe  191 (253)
                      .++.+.+..... +. ++.++|++.+.+...|+|||++|.++++..+++.|+.+...  ..+++   .++..+.++++++
T Consensus        42 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~C~Rcl~~~~~~~~~~~~~~f~~~~~~--~~~~~---~~dd~v~v~~~~~  115 (176)
T COG1399          42 DPGVVVGVSAYA-EIDLVVLDGQVSAEVTLECQRCLEPVEYPLDVTVTELFVRPDEQ--ADEEP---LEDDEVEVIEDGE  115 (176)
T ss_pred             CcceeeEEEEee-ccceEEEEEEEEEEEEEcccccCCcceeeEEEEEEEEeecCccc--ccccc---CCCceeeeccCCc
Confidence            343444444443 34 59999999999999999999999999999999999866321  11111   1223333366779


Q ss_pred             eeCcHHHHHhhhhcCCCcccCCCCCcccCccccc-c----cCccCCCCCchHHHHHHHHHh
Q 025385          192 ADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQY-I----GAKNTASMAKRWGRLLELRNT  247 (253)
Q Consensus       192 IDLdelI~EqIiLalPmK~LCSEDCKGLCP~CG~-~----c~c~~e~IDPR~AkLkkL~k~  247 (253)
                      |||.+.|.|+|+|++||+++|.++|+|+|+.||. .    -+++.+.+|||||+|++||++
T Consensus       116 iDL~~~VeDeilLalP~~~l~~~~~~g~~~~~g~~~~~~ee~~~~~~vd~rfA~La~Lk~~  176 (176)
T COG1399         116 IDLLESVEDEILLALPLVPLCEPECCGLCPPCGVWGVLPEEGEKKEKVDPRFAVLADLKDK  176 (176)
T ss_pred             ccHHHHHHHHHHHhCCCccccCccccccCcccCCccccCchhhhhccCCChHHHHHHhhcC
Confidence            9999999999999999999999999999999986 1    222334799999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00