Citrus Sinensis ID: 025410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAGRGGGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTPAGSAARRGRTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIPTAKKAEREKRVRTLMSIR
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHcccccccccHHHHHHHHHcccEEEEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpeardrlvrpVDVAVVFAQRRQGVLGilqdepesasnplgsplgraaaatprvqtrvagrggglgtprsgvvrgrrnafgsatvtrgpigrentpagsaarrgrtvlpswyprtplrdITAVVRAIERRRAHlgeveglqmespmshsqrgndsfvplsgappehnismmtptptlsvkacppsigkvpKILLDITNQagaelesltpqKKLLNSIDKVEKVVMEELNKLKRIPTAKKAEREKRVRTLMSIR
Flexible Loop (DISEMBL)
mpeardrlvrpvdvaVVFAQRRQGVLgilqdepesasnplgsplgraaaatprvqtrvagrggglgtprsgvvrgrrnafgsatvtrgpigrentpagsaarrgrtvlpswyprtplrdITAVVRAIERRRAHlgeveglqmespmshsqrgNDSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAelesltpqkkllNSIDKVEKVVMEelnklkriptakkaerekrvrtlmsir
Low Complexity Region (SEG)
MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTrvagrggglgtprsgvvRGRRNAFGSATVTRGPIGRENTPAGSAARRGRTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIPTAKKAEREKRVRTLMSIR
Disordered region (IsUnstruct)
*******LVRPVDVAVVFAQRRQGVLGIL****************************************************************************TVLPSWYPRTPLRDITAVVRAIERRRA*************************************************C*PSIGKVPKILLDITNQA**********************V******************************
Disordered Region (DISOPRED)
**********PVDVAVVFAQRRQGVL*********************************************VVRGRRNAF*************************TVLPSWYPRTPLRDITAVVRAI**************************************************************************************LNSIDKVEKVV**********************RTLMSI*
Disordered Region (DISEMBL)
********VRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAGRGGGLGTPRSGVVRGRRNAFGSATVTRGPIGRE**********GRTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGL*************DSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIPTAK***************
Disordered Region (DISPRO)
*********RPVDVAVVFAQRRQGVLGILQDEPESA*NPLG*PLGRAAAATPRVQTRVAGRGGGLGTPRSGVVR*******************************TVLPSWYPRTPLRDITAVVRAIERRRAHL*********************************************KACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKR********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAGRGGGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTPAGSAARRGRTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIPTAKKAEREKRVRTLMSIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
255583278	250	conserved hypothetical protein [Ricinus	0.960	0.972	0.580	5e-68
224120216	248	predicted protein [Populus trichocarpa]	0.936	0.955	0.556	1e-59
15227912	259	uv-b-insensitive 4 [Arabidopsis thaliana	0.960	0.938	0.524	2e-56
225441692	266	PREDICTED: uncharacterized protein LOC10	0.980	0.932	0.535	2e-55
297739721	244	unnamed protein product [Vitis vinifera]	0.936	0.971	0.55	3e-55
224139830	247	predicted protein [Populus trichocarpa]	0.952	0.975	0.555	3e-54
297827893	258	polychome, UV-B-insensitive 4 [Arabidops	0.972	0.953	0.528	8e-51
15230880	243	UV-B-insensitive 4-like protein [Arabido	0.916	0.954	0.526	2e-49
297817118	249	hypothetical protein ARALYDRAFT_324277 [	0.936	0.951	0.505	7e-49
449464890	249	PREDICTED: uncharacterized protein LOC10	0.920	0.935	0.513	3e-45

>gi|255583278|ref|XP_002532403.1| conserved hypothetical protein [Ricinus communis] gi|223527899|gb|EEF29988.1| conserved hypothetical protein [Ricinus communis]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/260 (58%), Positives = 181/260 (69%), Gaps = 17/260 (6%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGR---AAAATPRVQTR 57
           MPEARDRL RP+D+A VF++RR G++G+ QD+P+  +   GSP+      A  T  V   
Sbjct: 1   MPEARDRLSRPIDIATVFSRRRSGLIGVYQDQPDLETALFGSPITSRLDTATRTGTVGLS 60

Query: 58  VAGRG-GGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTPAGSAARRG---RTVLPSWYP 113
             GRG G  GTPR+  +RGR        VT   IGRENTP     RRG   R+VLPSWYP
Sbjct: 61  PRGRGRGSFGTPRNQTLRGRH-----PYVT---IGRENTPV--TGRRGNGNRSVLPSWYP 110

Query: 114 RTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTP 173
           RTPLRDITA+VRAIERRR  LGE    ++ESP+ H+    DS  P + A  EH+ SMM+P
Sbjct: 111 RTPLRDITAIVRAIERRRELLGEGRAQEIESPVPHAYEVPDSSEPSAVAHLEHSNSMMSP 170

Query: 174 TPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKR 233
            P+L VK CPP++GKV KILLDITN+A  + E LTPQKKLLNSID VEK VMEEL KLKR
Sbjct: 171 IPSLQVKRCPPTVGKVSKILLDITNKASDDSEFLTPQKKLLNSIDTVEKEVMEELRKLKR 230

Query: 234 IPTAKKAEREKRVRTLMSIR 253
             +AKKAEREK+VRTLMS+R
Sbjct: 231 TASAKKAEREKKVRTLMSLR 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120216|ref|XP_002330993.1| predicted protein [Populus trichocarpa] gi|118483996|gb|ABK93885.1| unknown [Populus trichocarpa] gi|222872923|gb|EEF10054.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 147/264 (55%), Positives = 173/264 (65%), Gaps = 27/264 (10%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQG-VLGILQDEPESASNPLGSPLGRAAAATPRVQTRVA 59
           MP +RDRL  PVD+A +FA RRQ  +LG+ QD+PE      GSP  R  AAT R QT  A
Sbjct: 1   MPVSRDRLSSPVDIAALFAARRQSRILGVYQDQPELDMALFGSP--RPNAAT-RTQTVGA 57

Query: 60  G----RG-GGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTP-----AGSAARRGRTVLP 109
           G    RG GGLGTPR    RG R            +GREN P          R   +VLP
Sbjct: 58  GTIAVRGRGGLGTPRG---RGGRTT----------LGRENIPPPGSARRGRGRGSNSVLP 104

Query: 110 SWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNIS 169
           +WYPRTPLRD+TAVVRAIERRR  LG  +GL++ SPM   +  +DS      A  EH+  
Sbjct: 105 AWYPRTPLRDVTAVVRAIERRRERLGGSDGLEIRSPMPQVRMNHDSSEATPVAHLEHSNR 164

Query: 170 MMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELN 229
           +M+P PT +VK C  +IGKVPKIL  ITNQA  + +SLTPQKKLLNSID VEKVVMEEL 
Sbjct: 165 IMSPKPTTAVKGCSSTIGKVPKILQHITNQASGDPDSLTPQKKLLNSIDTVEKVVMEELR 224

Query: 230 KLKRIPTAKKAEREKRVRTLMSIR 253
           K+KR P+A+KAEREKRVRTLMS+R
Sbjct: 225 KMKRTPSARKAEREKRVRTLMSMR 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227912|ref|NP_181755.1| uv-b-insensitive 4 [Arabidopsis thaliana] gi|2673916|gb|AAB88650.1| hypothetical protein [Arabidopsis thaliana] gi|28950705|gb|AAO63276.1| At2g42260 [Arabidopsis thaliana] gi|110735686|dbj|BAE99823.1| hypothetical protein [Arabidopsis thaliana] gi|330255003|gb|AEC10097.1| uv-b-insensitive 4 [Arabidopsis thaliana]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 167/269 (62%), Gaps = 26/269 (9%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG 60
           MPEARDR+ R VD    F  RR    GIL DEP +  N  GSP+        RV +   G
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSH--GILLDEPATQHNLFGSPV-------QRVPSEATG 51

Query: 61  RGGGLG----TPRSGVVRGRRNAFGSATVT------RGPIGRENTPAGSAARRGR----- 105
             G +G    T R G+VRG      +          R P GREN   G   RRGR     
Sbjct: 52  GLGSIGQGSMTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQGRENMSLG-VTRRGRARASN 110

Query: 106 TVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPE 165
           +VLPSWYPRTPLRDI+AVVRAIERRRA +GE  G  +E+P        DS VPLSGA  E
Sbjct: 111 SVLPSWYPRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLE 170

Query: 166 HNISMMTPTPTLSVK-ACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVV 224
           H+ SM+TP P++  K   PPS  KV +ILLDIT +   E ++LTP+KKLLNSIDKVEKVV
Sbjct: 171 HDYSMVTPGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVV 230

Query: 225 MEELNKLKRIPTAKKAEREKRVRTLMSIR 253
           MEE+ K+K  P+AK+AEREKRVRTLMS+R
Sbjct: 231 MEEIQKMKSTPSAKRAEREKRVRTLMSMR 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441692|ref|XP_002277253.1| PREDICTED: uncharacterized protein LOC100245175 [Vitis vinifera]

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/271 (53%), Positives = 174/271 (64%), Gaps = 23/271 (8%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSP-----------LGRAAA 49
           MPE+RDRL RP D+A +F +RR G+LGIL D  E +SN   SP           LG   A
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASPSRRETTTRTTTLGARGA 60

Query: 50  ATPRVQTRVAGRGGGLGTPRSGVVRGRRNAFGSATVTRGPI-GRENTPA-----GSAARR 103
                        GG GTPR G  RGR  A     V R P+ GRENTPA         R 
Sbjct: 61  TGILASRGGGVGRGGFGTPRIGTGRGRGRA-----VYRSPLFGRENTPATGSGRRGRGRS 115

Query: 104 GRTVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRG-NDSFVPLSGA 162
           G +VLPSWYPRTPLRDIT VVRAIERRRA L E++G Q++ P+       +D  +P S A
Sbjct: 116 GNSVLPSWYPRTPLRDITHVVRAIERRRARLREIDGQQIDIPIPQDISDVHDPILPPSSA 175

Query: 163 PPEHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEK 222
             E +ISM++P+PT  +K  P ++GKVPKILLDIT+Q G   + LTPQKKLLNSID VEK
Sbjct: 176 QLEQDISMISPSPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEK 235

Query: 223 VVMEELNKLKRIPTAKKAEREKRVRTLMSIR 253
            VM+EL KLKR P+AK+AE+EKRVRTLMS+R
Sbjct: 236 AVMDELGKLKRTPSAKRAEQEKRVRTLMSMR 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739721|emb|CBI29903.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 143/260 (55%), Positives = 172/260 (66%), Gaps = 23/260 (8%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG 60
           MPE+RDRL RP D+A +F +RR G+LGIL D  E +SN   SP             R   
Sbjct: 1   MPESRDRLSRPEDIAELFLRRRSGILGILADGSERSSNLFASP-----------SRRGGV 49

Query: 61  RGGGLGTPRSGVVRGRRNAFGSATVTRGPI-GRENTPA-----GSAARRGRTVLPSWYPR 114
             GG GTPR G  RGR  A     V R P+ GRENTPA         R G +VLPSWYPR
Sbjct: 50  GRGGFGTPRIGTGRGRGRA-----VYRSPLFGRENTPATGSGRRGRGRSGNSVLPSWYPR 104

Query: 115 TPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRG-NDSFVPLSGAPPEHNISMMTP 173
           TPLRDIT VVRAIERRRA L E++G Q++ P+       +D  +P S A  E +ISM++P
Sbjct: 105 TPLRDITHVVRAIERRRARLREIDGQQIDIPIPQDISDVHDPILPPSSAQLEQDISMISP 164

Query: 174 TPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKR 233
           +PT  +K  P ++GKVPKILLDIT+Q G   + LTPQKKLLNSID VEK VM+EL KLKR
Sbjct: 165 SPTSGMKLVPKAVGKVPKILLDITDQTGGGSDFLTPQKKLLNSIDTVEKAVMDELGKLKR 224

Query: 234 IPTAKKAEREKRVRTLMSIR 253
            P+AK+AE+EKRVRTLMS+R
Sbjct: 225 TPSAKRAEQEKRVRTLMSMR 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139830|ref|XP_002323297.1| predicted protein [Populus trichocarpa] gi|222867927|gb|EEF05058.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/259 (55%), Positives = 164/259 (63%), Gaps = 18/259 (6%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGV-LGILQDEPESASNPLGSPLGRAAAATPRVQTRVA 59
           M E+RDRL R VD+A +FA RRQ + LGI QD PE      GSP    A    R QT   
Sbjct: 1   MTESRDRLSRAVDIAAIFAARRQSMNLGIYQDRPELDMALFGSPRTNTAI---RNQTVGV 57

Query: 60  GRGGGLGTPRSGVVRGRRNAFGSATVTRGPIGRENTPA-GSAARR----GRTVLPSWYPR 114
           G   G G  R G  RGR    G  T    P+ REN P  GSA RR      ++LPSWYPR
Sbjct: 58  GTITGRGRGRLGTPRGR----GGWT----PLDRENMPPPGSARRRRGRGSNSLLPSWYPR 109

Query: 115 TPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMTPT 174
           TPLRDITAVVRAIERR   LG  +G ++ SPM   +   +       A PE +  +M+P 
Sbjct: 110 TPLRDITAVVRAIERR-GRLGGSDGREIGSPMPQGRMDPEFSEATPVAHPEPSNRIMSPK 168

Query: 175 PTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRI 234
           PT + K CP +IGKVPKIL  ITNQA  + E LTPQKKLLNSID VEKVVMEEL KLKR 
Sbjct: 169 PTPAFKGCPSTIGKVPKILQHITNQASGDPECLTPQKKLLNSIDTVEKVVMEELQKLKRT 228

Query: 235 PTAKKAEREKRVRTLMSIR 253
           P+AKKAEREKRVRTLMS+R
Sbjct: 229 PSAKKAEREKRVRTLMSMR 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827893|ref|XP_002881829.1| polychome, UV-B-insensitive 4 [Arabidopsis lyrata subsp. lyrata] gi|297327668|gb|EFH58088.1| polychome, UV-B-insensitive 4 [Arabidopsis lyrata subsp. lyrata]

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 140/265 (52%), Positives = 166/265 (62%), Gaps = 19/265 (7%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG 60
           MPEARDR+ RPVD    F  RR    GIL DEP +  N  GSP+ R     P   T +  
Sbjct: 1   MPEARDRIERPVDYPAAFLNRRSH--GILLDEPATHHNLFGSPVQRV----PSEATGLGS 54

Query: 61  RGGGLGTPRSGVVRGRRNAFGSATVT------RGPIGRENTPAGSAARRGR-----TVLP 109
            G G    R G+VRG      +          R P GREN   G   RRGR     +VLP
Sbjct: 55  VGQGSMMGRGGLVRGNFGIRRTGGGRRGQIQFRSPQGRENMSLG-VTRRGRARASNSVLP 113

Query: 110 SWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNIS 169
           SWYPRTPLRD++AVVRA+ERRRA +GE  G  +E+P        DS VPLSGA  EH+ S
Sbjct: 114 SWYPRTPLRDVSAVVRAVERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAQLEHDYS 173

Query: 170 MMTPTPTLSVK-ACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEEL 228
           M+TP P++  K   PPS  KV +ILLDIT +   E ++LTPQKKLLNSIDKVEKVVMEE+
Sbjct: 174 MVTPGPSVGFKRPWPPSTAKVHQILLDITRENTGEEDALTPQKKLLNSIDKVEKVVMEEI 233

Query: 229 NKLKRIPTAKKAEREKRVRTLMSIR 253
            K+K  P+AK+AEREKRVRTLMS+R
Sbjct: 234 QKMKSTPSAKRAEREKRVRTLMSMR 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230880|ref|NP_191345.1| UV-B-insensitive 4-like protein [Arabidopsis thaliana] gi|6729529|emb|CAB67614.1| putative protein [Arabidopsis thaliana] gi|28393730|gb|AAO42276.1| unknown protein [Arabidopsis thaliana] gi|28973331|gb|AAO63990.1| unknown protein [Arabidopsis thaliana] gi|332646189|gb|AEE79710.1| UV-B-insensitive 4-like protein [Arabidopsis thaliana]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/264 (52%), Positives = 168/264 (63%), Gaps = 32/264 (12%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG 60
           MPEARDR  RPVD + +FA RR+   GIL DEP+S  + + SP+       P +     G
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRH--GILLDEPDSRLSLIESPV------NPDI-----G 47

Query: 61  RGGGLGTPRSGVVRGRR------NAFGSATVTRGPIGRENTPAGSAAR-RGRTVLPSWYP 113
             GG G    G+VRG        N  G  T  R P GREN P  +A R RG  +LPSWYP
Sbjct: 48  SIGGTG----GLVRGNFTTWRPGNGRGGHTPFRLPQGRENMPIVTARRGRGGGLLPSWYP 103

Query: 114 RTPLRDITAVVRAIERRR-AHLGEVEGLQMESPMSHSQRGN-DSFVPLSGAPPEHNISMM 171
           RTPLRDIT +VRAIERRR A  G  +G  +E P +H Q G  +S VPLSG   EH  SM+
Sbjct: 104 RTPLRDITHIVRAIERRRGAGTGGDDGRVIEIP-THRQVGVLESPVPLSG---EHKCSMV 159

Query: 172 TPTPTLSVK-ACPPSIGKVPKILLDITNQ-AGAELESLTPQKKLLNSIDKVEKVVMEELN 229
           TP P++  K +CPPS  KV K+LLDIT + A  E   +TP+KKLLNSIDKVEK+VM E+ 
Sbjct: 160 TPGPSVGFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQ 219

Query: 230 KLKRIPTAKKAEREKRVRTLMSIR 253
           KLK  P AK+ EREKRVRTLM++R
Sbjct: 220 KLKSTPQAKREEREKRVRTLMTMR 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817118|ref|XP_002876442.1| hypothetical protein ARALYDRAFT_324277 [Arabidopsis lyrata subsp. lyrata] gi|297322280|gb|EFH52701.1| hypothetical protein ARALYDRAFT_324277 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 134/265 (50%), Positives = 168/265 (63%), Gaps = 28/265 (10%)

Query: 1   MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVAG 60
           MPEARDR+ RPVD   +F  RR    G+L DEP+S  + + SP+          +T   G
Sbjct: 1   MPEARDRIERPVDYPAIFVNRRSN--GVLLDEPDSRLSLIESPVN--------PETGSMG 50

Query: 61  RGGGLGTPRSGVVRGRR------NAFGSATVTRGPIGRENTPAGSAARRGR--TVLPSWY 112
           RG  +GT   G+VRG        N  G  +  R   GREN     +ARRGR  ++LPSWY
Sbjct: 51  RGSLVGT--GGLVRGNFSTWRPGNGRGGHSPFRLSQGRENNMPMVSARRGRGPSLLPSWY 108

Query: 113 PRTPLRDITAVVRAIERRR-AHLGEVEGLQMESPMSHSQRGN-DSFVPLSGAPPEHNISM 170
           PRTPLRDIT ++R IERRR A +G  +G  +E P +H Q G  +S VPLSG   EH  S+
Sbjct: 109 PRTPLRDITHIMRTIERRRGAGIGGDDGRDIEIP-THQQVGVLESPVPLSG---EHKCSI 164

Query: 171 MTPTPTLSVK-ACPPSIGKVPKILLDITNQ-AGAELESLTPQKKLLNSIDKVEKVVMEEL 228
           +TP P++  K +CPPS  KV K+LLDIT + A  E   +TP+KKLLNSIDKVEK+VM E+
Sbjct: 165 VTPGPSVGFKRSCPPSTAKVHKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEI 224

Query: 229 NKLKRIPTAKKAEREKRVRTLMSIR 253
            KLK  P AK+ EREKRVRTLMS+R
Sbjct: 225 QKLKSTPHAKREEREKRVRTLMSMR 249

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464890|ref|XP_004150162.1| PREDICTED: uncharacterized protein LOC101212180 [Cucumis sativus] gi|449476364|ref|XP_004154717.1| PREDICTED: uncharacterized protein LOC101224073 [Cucumis sativus]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/269 (51%), Positives = 161/269 (59%), Gaps = 36/269 (13%)

Query: 1   MPEARDRLVRPVDVAVVFAQRR-QGVLGILQDEPESASNPLGSPLGRAAAATPRVQTRVA 59
           M EARDRL R VD A VFA+RR +G+L    DE E  SN +G+P+ RA   T   Q R  
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGIL----DEQEMGSNLIGTPIARATT-TNTAQQRPT 55

Query: 60  GRGGG---------LGTPRSGVVRGRRNAFGSATVTRGPI-GREN----TPAGSAARRGR 105
             G G          G+P SG +   RN F    + R P+  REN    +   S +R   
Sbjct: 56  NPGPGGGGTNLRRTFGSPISGGIG--RNRF----LYRTPVLSRENPSAGSSRRSRSRGRN 109

Query: 106 TVLPSWYPRTPLRDITAVVRAIERRRAHLGEVEGLQMES-PMSHSQRGNDSFVPLSGAPP 164
           +VLP WYPRTPLRDITAVVRAIER RA L E EG   +S P    +R  +  V ++    
Sbjct: 110 SVLPIWYPRTPLRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQ 169

Query: 165 EHNISMMTPTPTLSVKACPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVV 224
           E  IS++TP PT         +GKVPKIL  I N+     E LTPQKKLLNSIDKVEKVV
Sbjct: 170 EPIISLLTPKPT---------VGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVV 220

Query: 225 MEELNKLKRIPTAKKAEREKRVRTLMSIR 253
           MEEL KLKR P+AKKAEREKRVRTLMS R
Sbjct: 221 MEELQKLKRTPSAKKAEREKRVRTLMSFR 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2060035	259	UVI4 "UV-B-INSENSITIVE 4" [Ara	0.988	0.965	0.519	1.6e-54
TAIR|locus:2095823	243	UVI4-LIKE "UV-B-insensitive 4-	0.940	0.979	0.511	1.2e-49

TAIR|locus:2060035 UVI4 "UV-B-INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 136/262 (51%), Positives = 161/262 (61%)

Query:     1 MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAA-ATPRVQTXXX 59
             MPEARDR+ R VD    F  RR    GIL DEP +  N  GSP+ R  + AT  + +   
Sbjct:     1 MPEARDRIERQVDYPAAFLNRRSH--GILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQ 58

Query:    60 XXXXXXXXXXXXXXRGRRNAFG--SATVTRGPIGRENTPAGSAARRGR-----TVLPSWY 112
                             RR   G       R P GREN   G   RRGR     +VLPSWY
Sbjct:    59 GSMTGRGGLVRGNFGIRRTGGGRRGQIQFRSPQGRENMSLG-VTRRGRARASNSVLPSWY 117

Query:   113 PRTPLRDITAVVRAIERRRAHLGEVEGLQMESPMSHSQRGNDSFVPLSGAPPEHNISMMT 172
             PRTPLRDI+AVVRAIERRRA +GE  G  +E+P        DS VPLSGA  EH+ SM+T
Sbjct:   118 PRTPLRDISAVVRAIERRRARMGEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 177

Query:   173 PTPTLSVKA-CPPSIGKVPKILLDITNQAGAELESLTPQKKLLNSIDKVEKVVMEELNKL 231
             P P++  K   PPS  KV +ILLDIT +   E ++LTP+KKLLNSIDKVEKVVMEE+ K+
Sbjct:   178 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 237

Query:   232 KRIPTAKKAEREKRVRTLMSIR 253
             K  P+AK+AEREKRVRTLMS+R
Sbjct:   238 KSTPSAKRAEREKRVRTLMSMR 259

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010091 "trichome branching" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2095823 UVI4-LIKE "UV-B-insensitive 4-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 132/258 (51%), Positives = 161/258 (62%)

Query:     1 MPEARDRLVRPVDVAVVFAQRRQGVLGILQDEPESASNPLGSPLGRAAAATPRVQTXXXX 60
             MPEARDR  RPVD + +FA RR+   GIL DEP+S  + + SP+       P + +    
Sbjct:     1 MPEARDRTERPVDYSTIFANRRRH--GILLDEPDSRLSLIESPVN------PDIGSIGGT 52

Query:    61 XXXXXXXXXXXXXRGRRNAFGSATVTRGPIGRENTPAGSAAR-RGRTVLPSWYPRTPLRD 119
                           G  N  G  T  R P GREN P  +A R RG  +LPSWYPRTPLRD
Sbjct:    53 GGLVRGNFTTWRP-G--NGRGGHTPFRLPQGRENMPIVTARRGRGGGLLPSWYPRTPLRD 109

Query:   120 ITAVVRAIERRR-AHLGEVEGLQMESPMSHSQRGN-DSFVPLSGAPPEHNISMMTPTPTL 177
             IT +VRAIERRR A  G  +G  +E P +H Q G  +S VPLSG   EH  SM+TP P++
Sbjct:   110 ITHIVRAIERRRGAGTGGDDGRVIEIP-THRQVGVLESPVPLSG---EHKCSMVTPGPSV 165

Query:   178 SVK-ACPPSIGKVPKILLDITNQ-AGAELESLTPQKKLLNSIDKVEKVVMEELNKLKRIP 235
               K +CPPS  KV K+LLDIT + A  E   +TP+KKLLNSIDKVEK+VM E+ KLK  P
Sbjct:   166 GFKRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTP 225

Query:   236 TAKKAEREKRVRTLMSIR 253
              AK+ EREKRVRTLM++R
Sbjct:   226 QAKREEREKRVRTLMTMR 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       236   0.00089  113 3  11 23  0.45    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.84u 0.13s 23.97t   Elapsed:  00:00:01
  Total cpu time:  23.84u 0.13s 23.97t   Elapsed:  00:00:01
  Start:  Fri May 10 08:01:36 2013   End:  Fri May 10 08:01:37 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007088 "regulation of mitosis" evidence=IMP

GO:0007113 "endomitotic cell cycle" evidence=IMP

GO:0007276 "gamete generation" evidence=RCA

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00